HHsearch alignment for GI: 254780280 and conserved domain: COG1940
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].
Probab=100.00 E-value=3.4e-38 Score=254.02 Aligned_cols=290 Identities=22% Similarity=0.227 Sum_probs=194.8
Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCC---CHHHHH----HHHHHHCCCCCCCEEEEEEEEEE--E
Q ss_conf 76677379998575118999987799808899974388735---889999----99997223456554699973044--1
Q gi|254780280|r 9 FPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYE---NLEHAI----QEVIYRKISIRLRSAFLAIATPI--G 79 (348)
Q Consensus 9 ~~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~---~~~~~i----~~~l~~~~~~~~~~igi~v~Gpv--~ 79 (348)
T Consensus 2 ~~~~~~~lgidIggt~i~~~l~d~~-g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi~~pg~~~ 79 (314)
T COG1940 2 NPEAMTVLGIDIGGTKIKVALVDLD-GEILLRERIPTPTPDPEEAILEAILALVAELLKQAQ-GRVAIIGIGIPGPGDVD 79 (314)
T ss_pred CCCCEEEEEEEECCCEEEEEEEECC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEEEEEECC
T ss_conf 9876299999988978999999379-978988998778888456799999999999987527-67756999997646126
Q ss_pred CCC-EEEECCCCCC--CCHHH-HHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEE
Q ss_conf 685-5642135666--69889-9998289855882126543200001586553530243455766675279931762022
Q gi|254780280|r 80 DQK-SFTLTNYHWV--IDPEE-LISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLG 155 (348)
Q Consensus 80 ~~~-~~~~~~~~~~--~~~~~-l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g 155 (348)
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~Pv~veNDan~aAlaE~~~g~-------------~~~~~~~~~i~~gtGIG 145 (314)
T COG1940 80 NGTVIVPAPNLGWWNGVDLAEELEARLG-LPVFVENDANAAALAEAWFGA-------------GRGIDDVVYITLGTGIG 145 (314)
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHC-CCEEEECCHHHHHHHHHHHCC-------------CCCCCEEEEEEECCCEE
T ss_conf 8736742576654446779999999889-987992519999999987287-------------77887499999899748
Q ss_pred EEEEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHH-HHHHHHCCCCCC-CCCC
Q ss_conf 45431058--8630113567866667661023478999985318986487752222389999-999874088864-3698
Q gi|254780280|r 156 ISSVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIY-KALCIADGFESN-KVLS 231 (348)
Q Consensus 156 ~~~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y-~~l~~~~~~~~~-~~~~ 231 (348)
T Consensus 146 ~giv~~g~l~~G~~g~aGe~Gh~~v~~~g~----------c~cG~~GclE~~as~~al~~~~~~~~~----~~~~~~~~~ 211 (314)
T COG1940 146 GGIIVNGKLLRGANGNAGEIGHMVVDPDGE----------CGCGRRGCLETYASGRAILRRAAEALE----SEAGELTAK 211 (314)
T ss_pred EEEEECCEECCCCCCCCCCCCCCEECCCCC----------CCCCCCCCHHHHCCHHHHHHHHHHHCC----CCCCCCCHH
T ss_conf 999989975058998676058713168886----------668887707663077999986432014----444567899
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC-HHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCE
Q ss_conf 889988368957999999999999999999999748997389965-6776556772764899998837983788973887
Q gi|254780280|r 232 SKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISG-GIPYKIIDLLRNSSFRESFENKSPHKELMRQIPT 310 (348)
Q Consensus 232 ~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgG-Gi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv 310 (348)
T Consensus 212 ~i~~~a~~gd~~a~~~~~~~~~~la~~ianl~~~~~P~~-IvigG~~~~~~~~~~~~--~l~~~~~~~~-~~~~~~~~~~ 287 (314)
T COG1940 212 DIFELAAAGDPLAKEVIERAADYLARGLANLINLLDPEV-IVIGGGGVSALGDLLLP--RLRKLLAKYL-FPPVLRPRIV 287 (314)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECCCHHHHHHHHHH--HHHHHHHHHC-CCCCCCCCEE
T ss_conf 999998758988999999999999999999999739974-99979645666788999--9999987640-3210234201
Q ss_pred EEEEC-CCCHHHHHHHHHHCCCC
Q ss_conf 99957-87227759998738001
Q gi|254780280|r 311 YVITN-PYIAIAGMVSYIKMTDC 332 (348)
Q Consensus 311 ~~~~~-~~agl~GAa~~~r~~~~ 332 (348)
T Consensus 288 ~~~~~~~~a~~~ga~~~~~~~~~ 310 (314)
T COG1940 288 EAALGGNDAGLIGAALLALLLLL 310 (314)
T ss_pred EHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 00015643325648988754222