HHsearch alignment for GI: 254780280 and conserved domain: PRK13928
>PRK13928 rod shape-determining protein Mbl; Provisional.
Probab=92.71 E-value=0.62 Score=23.86 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=48.6
Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEEEE-EE--E-----------------------------CC-----CCCCCHHH
Q ss_conf 677379998575118999987799808899-97--4-----------------------------38-----87358899
Q gi|254780280|r 11 IAFPVLLADIGGTNVRFAILRSMESEPEFC-CT--V-----------------------------QT-----SDYENLEH 53 (348)
Q Consensus 11 ~~~~vL~iDIGGT~ir~glv~~~~~~i~~~-~~--~-----------------------------~t-----~~~~~~~~ 53 (348)
T Consensus 1 ~~~~~iGIDLGTtn~~v~~-~-~~~iv~~ePSvVa~~~~~~~~l~vG~~Ak~~~~~~p~~~~~~~pl~~g~i~d~e~~~~ 78 (325)
T PRK13928 1 MFGRDIGIDLGTANVLVYV-K-GKGIVLNEPSVVAIDRNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEK 78 (325)
T ss_pred CCCCEEEEECCHHCEEEEE-C-CCCEECCCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCEEEEEECCCCEECCHHHHHH
T ss_conf 9877448998602589998-7-9987987884999988999799865999985447998789999568976636788899
Q ss_pred HHHHHHHHCC---CCCCCEEEEEEEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 9999997223---456554699973044168556421356666988999982898558821265432000
Q gi|254780280|r 54 AIQEVIYRKI---SIRLRSAFLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAI 120 (348)
Q Consensus 54 ~i~~~l~~~~---~~~~~~igi~v~Gpv~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~i~ND~~a~a~~~ 120 (348)
T Consensus 79 ~L~~l~~~~~~~~~~~~~~vVItVPa~f~~~q---------R~At~~Aa~~AGl~~v~li~EPtAAAl~~ 139 (325)
T PRK13928 79 MLKYFINKACGKRFFSKPRIMICIPSGITSVE---------KRAVRDAAEQAGAKKVYLIEEPLAAAIGA 139 (325)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH---------HHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 89999999730235799819999797999999---------99999999986998799965569999984