RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus
Liberibacter asiaticus str. psy62]
(348 letters)
>gnl|CDD|145702 pfam02685, Glucokinase, Glucokinase. This is a family of
glucokinases or glucose kinases EC:2.7.1.2. These
enzymes phosphorylate glucose using ATP as a donor to
give glucose-6-phosphate and ADP.
Length = 316
Score = 339 bits (871), Expect = 8e-94
Identities = 133/314 (42%), Positives = 183/314 (58%), Gaps = 13/314 (4%)
Query: 16 LLADIGGTNVRFAILRSMESEPEFCC--TVQTSDYENLEHAIQEVI--YRKISIRLRSAF 71
L DIGGTN RFA++ EP T ++DY +LE A+Q+ + R R A
Sbjct: 1 LAGDIGGTNARFALVDDAGGEPILLSIRTYASADYPSLEEALQDYLAEADAGVARPRHAC 60
Query: 72 LAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSI 131
A+A P+ LTN WVI EEL + + + V LINDFEAQA AI L + V +
Sbjct: 61 FAVAGPVDGD-EVRLTNLPWVISIEELRAALGLDAVHLINDFEAQAYAIPRLGADDLVQL 119
Query: 132 GQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPH 191
G D + ++GPGTGLG++ +I WI + EGGH+D P ++R+ E+ +
Sbjct: 120 GGGKPDP---GAPIAVLGPGTGLGVAGLIPTGGGWIVLPGEGGHVDFAPRSEREAELLQY 176
Query: 192 LTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKS---EDPIALKAI 248
L R G +SAE +LSG GLVN+Y+ALC DG ++L DI + + +DP+A +A+
Sbjct: 177 LRRR-FGHVSAERVLSGPGLVNLYRALCALDGLTP-ELLLPADITAAALAGDDPLAREAL 234
Query: 249 NLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQI 308
LFC LG VAG+LAL ARGGVYI+GGI +I++ L+ S FR FE+K L+R I
Sbjct: 235 ELFCAILGSVAGNLALTLGARGGVYIAGGIAPRILEFLKASGFRARFEDKGRFSALLRDI 294
Query: 309 PTYVITNPYIAIAG 322
P YVIT+P + G
Sbjct: 295 PVYVITHPQPGLLG 308
>gnl|CDD|31179 COG0837, Glk, Glucokinase [Carbohydrate transport and metabolism].
Length = 320
Score = 331 bits (851), Expect = 2e-91
Identities = 131/323 (40%), Positives = 188/323 (58%), Gaps = 11/323 (3%)
Query: 8 DFPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRL 67
+ +P L+ DIGGTN RFA++ +EP T +DY +LE A+Q+ + ++
Sbjct: 1 MKAMGYPRLVGDIGGTNARFALVEIAPAEPLQAETYACADYPSLEEAVQDYLSEHTAVAP 60
Query: 68 RSAFLAIATPI-GDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCS 126
RSA AIA PI GD+ LTN+ WV + + + + + LINDF AQALAI L
Sbjct: 61 RSACFAIAGPIDGDE--VRLTNHDWVFSIARMRAELGLDHLSLINDFAAQALAIPRLGAE 118
Query: 127 NYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDY 186
+ IG + R ++GPGTGLG++ ++ WIP+ EGGH+D P ++R++
Sbjct: 119 DLEQIG---GGKPEPNAPRAVLGPGTGLGVAGLVPNGGGWIPLPGEGGHVDFAPRSEREF 175
Query: 187 EIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKS---EDPI 243
+I +L R GR+SAE +LSG GLVN+Y+ALC ADG L+ I ++ D +
Sbjct: 176 QILEYLRAR-FGRVSAERVLSGPGLVNLYRALCAADGRLPED-LTPAAITERALAGGDAL 233
Query: 244 ALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKE 303
A + ++LFC LGRVAGDLAL ARGGVYI+GGI +I++ L+ S FR FE+K
Sbjct: 234 ARETLSLFCAILGRVAGDLALTLGARGGVYIAGGIVPRILEALKASGFRARFEDKGRMSA 293
Query: 304 LMRQIPTYVITNPYIAIAGMVSY 326
+ IP YVI +P + G +
Sbjct: 294 YLADIPVYVILHPQPGLLGAAAA 316
>gnl|CDD|32123 COG1940, NagC, Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 314
Score = 49.4 bits (117), Expect = 2e-06
Identities = 63/291 (21%), Positives = 97/291 (33%), Gaps = 40/291 (13%)
Query: 10 PIAFPVLLADIGGTNVRFAILRS---MESEPEFCCTVQTSDYENLEHAIQEVIYRKISIR 66
P A VL DIGGT ++ A++ + + LE + V +
Sbjct: 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQAQ 62
Query: 67 LRSAFLAIATPI-----GDQKSFTLTNYHWVIDP---EELISRMQFEDVLLINDFEAQAL 118
R A + I P N W EEL +R+ V + ND A AL
Sbjct: 63 GRVAIIGIGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLP-VFVENDANAAAL 121
Query: 119 AICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDI 178
A G + ++ + +G G G GI + + E GHM +
Sbjct: 122 A--------EAWFGAGRGIDDVVY---ITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVV 170
Query: 179 GPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVS- 237
P + L E SG+ ++ L++KDI
Sbjct: 171 DPDGECGCGRRGCL----------ETYASGRAILRRAA----EALESEAGELTAKDIFEL 216
Query: 238 -KSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLR 287
+ DP+A + I +YL R +L + + I GG + DLL
Sbjct: 217 AAAGDPLAKEVIERAADYLARGLANLINLL-DPEVIVIGGGGVSALGDLLL 266
>gnl|CDD|35965 KOG0746, KOG0746, KOG0746, 60S ribosomal protein L3 and related
proteins [Translation, ribosomal structure and
biogenesis].
Length = 384
Score = 30.0 bits (67), Expect = 0.98
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 297 NKSPHKELMRQIPTYVITNPYIAIAGMVSYIK-------MTDCFNLFISEGIKRRWFKD 348
+K KE++ + ++ P + + G+V Y++ + + +S+ KRR++K+
Sbjct: 52 SKVNKKEVVEAVT--IVETPPMVVVGIVGYVETPRGLRTLKTVWAEHLSDECKRRFYKN 108
>gnl|CDD|29368 cd01946, ribokinase_group_C, Ribokinase-like subgroup C. Found
only in bacteria, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time..
Length = 277
Score = 27.6 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 91 WV-IDPEELISRMQFEDVLLINDFEAQALA 119
W+ I PE+L + DV++IND EA+ L
Sbjct: 149 WISIKPEKLKKVLAKVDVVIINDGEARQLT 178
>gnl|CDD|144094 pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.
Length = 504
Score = 27.5 bits (61), Expect = 6.4
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 97 ELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGI 156
E + + DVL I F L LS N +S G+F +D+ S + G +
Sbjct: 210 EFVENVYLPDVLAIGGFYKDWLYGGGLSGKNVLSYGEFPKDDYDKKSFLLPGGVIINGDL 269
Query: 157 SSVIR---------AKDSWIPISCEGGHMDIGPSTQRDYEIFP 190
+ V K SW E G T Y + P
Sbjct: 270 TEVHPVDEDLIEEFVKHSWYDYGDEKGLHPWDGVTDPKYTLGP 312
>gnl|CDD|176319 cd01243, PH_MRCK, MRCK (myotonic dystrophy-related Cdc42-binding
kinase) pleckstrin homology (PH) domain. MRCK
(myotonic dystrophy-related Cdc42-binding kinase)
pleckstrin homology (PH) domain. MRCK consists of a
serine/threonine kinase domain, a cysteine rich (C1)
region, a PH domain and a p21 binding motif. It has been
shown to promote cytoskeletal reorganization, which
affects many biological processes. The MRCK PH domain
is responsible for its targeting to cell to cell
junctions. PH domains share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. PH domains also have
diverse functions. They are often involved in targeting
proteins to the plasma membrane, but few display strong
specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains.
Length = 122
Score = 26.8 bits (59), Expect = 8.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 5 SKKDFPIAFPVLLADIGGTNVRFAILRSMESEPE 38
SKKD P F V + I ++ + + L ++E E
Sbjct: 74 SKKDIPCIFRVTTSQISASSSKCSTLMLADTEEE 107
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.139 0.409
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,244,695
Number of extensions: 224179
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 11
Length of query: 348
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 253
Effective length of database: 4,210,882
Effective search space: 1065353146
Effective search space used: 1065353146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)