RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62] (348 letters) >gnl|CDD|145702 pfam02685, Glucokinase, Glucokinase. This is a family of glucokinases or glucose kinases EC:2.7.1.2. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP. Length = 316 Score = 339 bits (871), Expect = 8e-94 Identities = 133/314 (42%), Positives = 183/314 (58%), Gaps = 13/314 (4%) Query: 16 LLADIGGTNVRFAILRSMESEPEFCC--TVQTSDYENLEHAIQEVI--YRKISIRLRSAF 71 L DIGGTN RFA++ EP T ++DY +LE A+Q+ + R R A Sbjct: 1 LAGDIGGTNARFALVDDAGGEPILLSIRTYASADYPSLEEALQDYLAEADAGVARPRHAC 60 Query: 72 LAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSI 131 A+A P+ LTN WVI EEL + + + V LINDFEAQA AI L + V + Sbjct: 61 FAVAGPVDGD-EVRLTNLPWVISIEELRAALGLDAVHLINDFEAQAYAIPRLGADDLVQL 119 Query: 132 GQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPH 191 G D + ++GPGTGLG++ +I WI + EGGH+D P ++R+ E+ + Sbjct: 120 GGGKPDP---GAPIAVLGPGTGLGVAGLIPTGGGWIVLPGEGGHVDFAPRSEREAELLQY 176 Query: 192 LTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKS---EDPIALKAI 248 L R G +SAE +LSG GLVN+Y+ALC DG ++L DI + + +DP+A +A+ Sbjct: 177 LRRR-FGHVSAERVLSGPGLVNLYRALCALDGLTP-ELLLPADITAAALAGDDPLAREAL 234 Query: 249 NLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQI 308 LFC LG VAG+LAL ARGGVYI+GGI +I++ L+ S FR FE+K L+R I Sbjct: 235 ELFCAILGSVAGNLALTLGARGGVYIAGGIAPRILEFLKASGFRARFEDKGRFSALLRDI 294 Query: 309 PTYVITNPYIAIAG 322 P YVIT+P + G Sbjct: 295 PVYVITHPQPGLLG 308 >gnl|CDD|31179 COG0837, Glk, Glucokinase [Carbohydrate transport and metabolism]. Length = 320 Score = 331 bits (851), Expect = 2e-91 Identities = 131/323 (40%), Positives = 188/323 (58%), Gaps = 11/323 (3%) Query: 8 DFPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRL 67 + +P L+ DIGGTN RFA++ +EP T +DY +LE A+Q+ + ++ Sbjct: 1 MKAMGYPRLVGDIGGTNARFALVEIAPAEPLQAETYACADYPSLEEAVQDYLSEHTAVAP 60 Query: 68 RSAFLAIATPI-GDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCS 126 RSA AIA PI GD+ LTN+ WV + + + + + LINDF AQALAI L Sbjct: 61 RSACFAIAGPIDGDE--VRLTNHDWVFSIARMRAELGLDHLSLINDFAAQALAIPRLGAE 118 Query: 127 NYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDY 186 + IG + R ++GPGTGLG++ ++ WIP+ EGGH+D P ++R++ Sbjct: 119 DLEQIG---GGKPEPNAPRAVLGPGTGLGVAGLVPNGGGWIPLPGEGGHVDFAPRSEREF 175 Query: 187 EIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKS---EDPI 243 +I +L R GR+SAE +LSG GLVN+Y+ALC ADG L+ I ++ D + Sbjct: 176 QILEYLRAR-FGRVSAERVLSGPGLVNLYRALCAADGRLPED-LTPAAITERALAGGDAL 233 Query: 244 ALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKE 303 A + ++LFC LGRVAGDLAL ARGGVYI+GGI +I++ L+ S FR FE+K Sbjct: 234 ARETLSLFCAILGRVAGDLALTLGARGGVYIAGGIVPRILEALKASGFRARFEDKGRMSA 293 Query: 304 LMRQIPTYVITNPYIAIAGMVSY 326 + IP YVI +P + G + Sbjct: 294 YLADIPVYVILHPQPGLLGAAAA 316 >gnl|CDD|32123 COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]. Length = 314 Score = 49.4 bits (117), Expect = 2e-06 Identities = 63/291 (21%), Positives = 97/291 (33%), Gaps = 40/291 (13%) Query: 10 PIAFPVLLADIGGTNVRFAILRS---MESEPEFCCTVQTSDYENLEHAIQEVIYRKISIR 66 P A VL DIGGT ++ A++ + + LE + V + Sbjct: 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQAQ 62 Query: 67 LRSAFLAIATPI-----GDQKSFTLTNYHWVIDP---EELISRMQFEDVLLINDFEAQAL 118 R A + I P N W EEL +R+ V + ND A AL Sbjct: 63 GRVAIIGIGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLP-VFVENDANAAAL 121 Query: 119 AICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDI 178 A G + ++ + +G G G GI + + E GHM + Sbjct: 122 A--------EAWFGAGRGIDDVVY---ITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVV 170 Query: 179 GPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVS- 237 P + L E SG+ ++ L++KDI Sbjct: 171 DPDGECGCGRRGCL----------ETYASGRAILRRAA----EALESEAGELTAKDIFEL 216 Query: 238 -KSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLR 287 + DP+A + I +YL R +L + + I GG + DLL Sbjct: 217 AAAGDPLAKEVIERAADYLARGLANLINLL-DPEVIVIGGGGVSALGDLLL 266 >gnl|CDD|35965 KOG0746, KOG0746, KOG0746, 60S ribosomal protein L3 and related proteins [Translation, ribosomal structure and biogenesis]. Length = 384 Score = 30.0 bits (67), Expect = 0.98 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 9/59 (15%) Query: 297 NKSPHKELMRQIPTYVITNPYIAIAGMVSYIK-------MTDCFNLFISEGIKRRWFKD 348 +K KE++ + ++ P + + G+V Y++ + + +S+ KRR++K+ Sbjct: 52 SKVNKKEVVEAVT--IVETPPMVVVGIVGYVETPRGLRTLKTVWAEHLSDECKRRFYKN 108 >gnl|CDD|29368 cd01946, ribokinase_group_C, Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.. Length = 277 Score = 27.6 bits (61), Expect = 5.1 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 91 WV-IDPEELISRMQFEDVLLINDFEAQALA 119 W+ I PE+L + DV++IND EA+ L Sbjct: 149 WISIKPEKLKKVLAKVDVVIINDGEARQLT 178 >gnl|CDD|144094 pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase. Length = 504 Score = 27.5 bits (61), Expect = 6.4 Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 9/103 (8%) Query: 97 ELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGI 156 E + + DVL I F L LS N +S G+F +D+ S + G + Sbjct: 210 EFVENVYLPDVLAIGGFYKDWLYGGGLSGKNVLSYGEFPKDDYDKKSFLLPGGVIINGDL 269 Query: 157 SSVIR---------AKDSWIPISCEGGHMDIGPSTQRDYEIFP 190 + V K SW E G T Y + P Sbjct: 270 TEVHPVDEDLIEEFVKHSWYDYGDEKGLHPWDGVTDPKYTLGP 312 >gnl|CDD|176319 cd01243, PH_MRCK, MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. Length = 122 Score = 26.8 bits (59), Expect = 8.9 Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 5 SKKDFPIAFPVLLADIGGTNVRFAILRSMESEPE 38 SKKD P F V + I ++ + + L ++E E Sbjct: 74 SKKDIPCIFRVTTSQISASSSKCSTLMLADTEEE 107 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0762 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,244,695 Number of extensions: 224179 Number of successful extensions: 535 Number of sequences better than 10.0: 1 Number of HSP's gapped: 525 Number of HSP's successfully gapped: 11 Length of query: 348 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 253 Effective length of database: 4,210,882 Effective search space: 1065353146 Effective search space used: 1065353146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.1 bits)