RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus
Liberibacter asiaticus str. psy62]
         (348 letters)



>gnl|CDD|178964 PRK00292, glk, glucokinase; Provisional.
          Length = 316

 Score =  431 bits (1110), Expect = e-121
 Identities = 124/321 (38%), Positives = 184/321 (57%), Gaps = 9/321 (2%)

Query: 13  FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFL 72
            P L+ DIGGTN RFA+      E E   T  T+DY +LE AI+  +  +  +++RSA  
Sbjct: 2   KPALVGDIGGTNARFALCDWANGEIEQIKTYATADYPSLEDAIRAYLADEHGVQVRSACF 61

Query: 73  AIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIG 132
           AIA P+   +   +TN+HW      +   +  + +LLINDF AQALAI  L   + V IG
Sbjct: 62  AIAGPVDGDE-VRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIG 120

Query: 133 QFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHL 192
                     +   ++GPGTGLG++ ++     WI +  EGGH+D  P ++ + +I  +L
Sbjct: 121 GGEPVP---GAPIAVIGPGTGLGVAGLVPVDGRWIVLPGEGGHVDFAPRSEEEAQILQYL 177

Query: 193 TERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKS---EDPIALKAIN 249
                G +SAE +LSG GLVN+Y+A+C ADG E   +L+  DI  ++     P+  + ++
Sbjct: 178 -RAEFGHVSAERVLSGPGLVNLYRAICKADGREPE-LLTPADITERALAGSCPLCRRTLS 235

Query: 250 LFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIP 309
           LFC  LGRVAG+LAL   ARGGVYI+GGI  + ++  + S FR +FE+K      +  IP
Sbjct: 236 LFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIP 295

Query: 310 TYVITNPYIAIAGMVSYIKMT 330
            YVIT+P   + G  +Y++  
Sbjct: 296 VYVITHPQPGLLGAGAYLRQA 316


>gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family
           transcriptional regulator; Provisional.
          Length = 638

 Score =  206 bits (526), Expect = 6e-54
 Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 16/320 (5%)

Query: 14  PVLLADIGGTNVRFAILRSMESEPEFCCTVQT---SDYENLEHAIQEVIYRKISIRLRSA 70
           P LLAD+GGTN RFA    +E+ P     ++    +DY  L  AI++ +      R+  A
Sbjct: 19  PRLLADVGGTNARFA----LETGPGEITQIRVYPGADYPTLTDAIRKYLKDVKIGRVNHA 74

Query: 71  FLAIATPI-GDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYV 129
            +AIA P+ GDQ    +TN+ W    E     + F+ +L++NDF A A+A+  L+ +  V
Sbjct: 75  AIAIANPVDGDQ--VRMTNHDWSFSIEATRRALGFDTLLVVNDFTALAMALPGLTDAQRV 132

Query: 130 SIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIF 189
            +G       S+     ++GPGTGLG+S +I A D WI +  EGGH    P  +R+ ++ 
Sbjct: 133 QVGGGTRRQNSVIG---LLGPGTGLGVSGLIPADDRWIALGSEGGHASFAPQDERE-DLV 188

Query: 190 PHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSE--DPIALKA 247
                +    +S E + +G G+  IY+AL   D       + + +IV ++   D +AL+A
Sbjct: 189 LQYARKKYPHVSFERVCAGPGMEIIYRALAARDKKRVAANVDTAEIVERAHAGDALALEA 248

Query: 248 INLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQ 307
           +  FC  LG  AG+LAL   A GG+YI GG+  K+ +L   SSFR  FE K   +  +  
Sbjct: 249 VECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLAN 308

Query: 308 IPTYVITNPYIAIAGMVSYI 327
           IPTY+IT  Y A  G+ + +
Sbjct: 309 IPTYLITAEYPAFLGVSAIL 328


>gnl|CDD|129832 TIGR00749, glk, glucokinase, proteobacterial type.  This model
           represents glucokinase of E. coli and close homologs,
           mostly from other proteobacteria, presumed to have
           equivalent function. This glucokinase is more closely
           related to a number of uncharacterized paralogs than to
           the glucokinase glcK (fromerly yqgR) of Bacillus
           subtilis and its closest homologs, so the two sets are
           represented by separate models.
          Length = 316

 Score =  203 bits (519), Expect = 4e-53
 Identities = 112/323 (34%), Positives = 165/323 (51%), Gaps = 25/323 (7%)

Query: 16  LLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYR---KISIRLRSAF- 71
           L+ DIGGTN R A+      E     T    D+ +LE  ++  +Y    K+ ++   A  
Sbjct: 1   LVGDIGGTNARLALCEIAPGEISQAKTYSGLDFPSLEAVVR--VYLEEHKVELKDPIAKG 58

Query: 72  -LAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVS 130
             AIA PI       +TN+ W     EL   + F  + +INDF A + AI  L   + + 
Sbjct: 59  CFAIACPITGD-WVAMTNHTWAFSIAELKQNLGFSHLEIINDFTAVSYAIPGLKKEDLIQ 117

Query: 131 IGQF-VEDNRSLFSSRVIVGPGTGLGISSVIRAKD-SWIPISCEGGHMDIGPSTQRDYEI 188
            G     + + +     I+G GTGLG++ +I   D  W+ +  EGGH+D  P+++ +  I
Sbjct: 118 FGGAEPVEGKPI----AILGAGTGLGVAHLIHQVDGRWVVLPGEGGHVDFAPNSELEAII 173

Query: 189 FPHLTERAE-GRLSAENLLSGKGLVNIYKALCIADGFESNKVLSS-----KDIVSKS--- 239
             +L  RA+ G +SAE +LSG GLVNIY+AL  AD       L       KDI  ++   
Sbjct: 174 LEYL--RAKIGHVSAERVLSGPGLVNIYEALVKADPERQFNKLPQENLKPKDISERALAG 231

Query: 240 EDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKS 299
                 +A++LFC   GR AG+LAL    RGGVYI+GGI  + I+  + S FR +FE+K 
Sbjct: 232 SCTDCRRALSLFCVIYGRFAGNLALNLGTRGGVYIAGGIVPRFIEFFKASGFRAAFEDKG 291

Query: 300 PHKELMRQIPTYVITNPYIAIAG 322
             KE +  IP YV+ +    + G
Sbjct: 292 RMKEYVHDIPVYVVLHDNPGLLG 314


>gnl|CDD|183508 PRK12408, PRK12408, glucokinase; Provisional.
          Length = 336

 Score =  171 bits (434), Expect = 3e-43
 Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 19/329 (5%)

Query: 8   DFPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSD---YENLEHA-IQEVI--YR 61
             P     + AD+GGT+VR A+   + + P+    V+  D   Y   ++  +  ++  + 
Sbjct: 11  AVPRPESFVAADVGGTHVRVAL---VCASPDAAKPVELLDYRTYRCADYPSLAAILADFL 67

Query: 62  KISIRLRSAFLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAIC 121
                +R   +A A    D       N  W + PE++ +++  + V L+NDFEA A A  
Sbjct: 68  AECAPVRRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYAAP 127

Query: 122 SLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPS 181
            +  +  +   Q     ++     +++GPGTGLG +  I      + +  E G   +  +
Sbjct: 128 YMEGNQVL---QLSGPAQAAAGPALVLGPGTGLGAALWIPNGGRPVVLPTEAGQAALAAA 184

Query: 182 TQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVS---- 237
           ++ + ++  HL  R    +  E++LSG GL+N+Y+ALC   G  +  V +S   ++    
Sbjct: 185 SELEMQLLQHL-LRTRTHVPIEHVLSGPGLLNLYRALCALRG--ATPVHASPAAITAAAL 241

Query: 238 KSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFEN 297
             +D +A +A+ +FC +LG V GD+AL + ARGGVY++GGI  +I D L  S F E F N
Sbjct: 242 AGDDALAHEALQVFCGFLGSVVGDMALAYGARGGVYLAGGILPQIADFLARSDFVERFLN 301

Query: 298 KSPHKELMRQIPTYVITNPYIAIAGMVSY 326
           K P +  + Q+P  ++ +  + + G  S+
Sbjct: 302 KGPMRPALEQVPVKLVEHGQLGVLGAASW 330


>gnl|CDD|185540 PTZ00288, PTZ00288, glucokinase 1; Provisional.
          Length = 405

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 72/348 (20%), Positives = 124/348 (35%), Gaps = 83/348 (23%)

Query: 19  DIGGTNVRFAILRSMESEPE------FCCTVQTSDY--------ENLEHAIQEVIYRKIS 64
           D+GGTN R    R ++ +            V  +D         E L+   +      +S
Sbjct: 32  DVGGTNARVGFAREVQHDDSGVHIIYVRFNVTKTDIRELLEFFDEVLQKLKKN-----LS 86

Query: 65  IRLRSAFLAIATP------------IGDQKSFTLTNYHWVIDPEELISRMQFEDVLLIND 112
              R A  AI+ P               +    LT+Y     P EL    +     L+ND
Sbjct: 87  FIQRVAAGAISVPGPVTGGQLAGPFNNLKGIARLTDY-----PVELFPPGRSA---LLND 138

Query: 113 FEAQALAICSLSCSN--------------YVSIGQFVEDNRSLFSSR-VIVGPGTGLGIS 157
            EA A  + ++S +               + ++ +       +   R +++ PGTGLG S
Sbjct: 139 LEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSS 198

Query: 158 SVIRA--KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIY 215
            +      D +I I  E GH+ I      D +    L      +  ++ + S   +  IY
Sbjct: 199 LIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDS--TVYPIY 256

Query: 216 KALCIADGFESN---------------KVLSSKDIVSKSEDPIALKAINLFCEYLGRVAG 260
           + +    G E N               +      +     D  A+KA+    +YL R+A 
Sbjct: 257 EDIVSGRGLEFNYAYEKRGNKPSAPLKEAAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAA 316

Query: 261 DLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQI 308
           ++++ F+    V +   I       + NS F   F+N    K+L  +I
Sbjct: 317 EISMQFLPLTVVLMGDNI-------VYNSFF---FDNPENVKQLQARI 354


>gnl|CDD|184386 PRK13906, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
           Provisional.
          Length = 307

 Score = 29.4 bits (66), Expect = 1.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 46  SDYENLEHAIQEVIYRKISIRLRSAFLAIATP 77
           +DYENL H +Q+ +  K  I L      I   
Sbjct: 272 TDYENLIHYVQKTVKEKFGIELNREVRIIGEH 303


>gnl|CDD|162017 TIGR00744, ROK_glcA_fam, ROK family protein (putative glucokinase).
            This alignment models one branch of the ROK superfamily
           of proteins. The three members of the seed alignment for
           this model all have experimental evidence for activity
           as glucokinase, but the set of related proteins is
           crowded with paralogs of different or unknown function.
           Proteins scoring above the trusted_cutoff will show
           strong similarity to at least one known glucokinase and
           may be designated as putative glucokinases. However,
           definitive identification of glucokinases should be done
           only with extreme caution.
          Length = 318

 Score = 27.2 bits (60), Expect = 6.0
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 22/109 (20%)

Query: 203 ENLLSGKGLVNIYKALCIADGFESNKV-------LSSKDI--VSKSEDPIALKAINLFCE 253
           E   S  GLV   K            +       +S+K +   ++  DP+A+ +      
Sbjct: 178 ETYASATGLVRYAKRANAKPERAEVLLALGDGDGISAKHVFVAARQGDPVAVDSYREVAR 237

Query: 254 YLGRVAGDLALI-----FMARGGVYISGGIPYKIIDLLRNSSFRESFEN 297
           + G    DLA +      +  GG+  +G       DLL     R+S++ 
Sbjct: 238 WAGAGLADLASLFNPSAIVLGGGLSDAG-------DLLL-DPIRKSYKR 278


>gnl|CDD|185617 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
          Length = 574

 Score = 26.9 bits (59), Expect = 7.6
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 190 PHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAIN 249
           PH+ E +  RL+    L  K  +N+     I  GF+  ++L+   +  +   P    AIN
Sbjct: 272 PHVWEFS--RLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTP---AAIN 326

Query: 250 LFCEYLG 256
            FCE +G
Sbjct: 327 RFCELVG 333


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,732,672
Number of extensions: 368320
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 10
Length of query: 348
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 254
Effective length of database: 3,963,321
Effective search space: 1006683534
Effective search space used: 1006683534
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)