RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62] (348 letters) >gnl|CDD|178964 PRK00292, glk, glucokinase; Provisional. Length = 316 Score = 431 bits (1110), Expect = e-121 Identities = 124/321 (38%), Positives = 184/321 (57%), Gaps = 9/321 (2%) Query: 13 FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFL 72 P L+ DIGGTN RFA+ E E T T+DY +LE AI+ + + +++RSA Sbjct: 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATADYPSLEDAIRAYLADEHGVQVRSACF 61 Query: 73 AIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIG 132 AIA P+ + +TN+HW + + + +LLINDF AQALAI L + V IG Sbjct: 62 AIAGPVDGDE-VRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIG 120 Query: 133 QFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHL 192 + ++GPGTGLG++ ++ WI + EGGH+D P ++ + +I +L Sbjct: 121 GGEPVP---GAPIAVIGPGTGLGVAGLVPVDGRWIVLPGEGGHVDFAPRSEEEAQILQYL 177 Query: 193 TERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKS---EDPIALKAIN 249 G +SAE +LSG GLVN+Y+A+C ADG E +L+ DI ++ P+ + ++ Sbjct: 178 -RAEFGHVSAERVLSGPGLVNLYRAICKADGREPE-LLTPADITERALAGSCPLCRRTLS 235 Query: 250 LFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIP 309 LFC LGRVAG+LAL ARGGVYI+GGI + ++ + S FR +FE+K + IP Sbjct: 236 LFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIP 295 Query: 310 TYVITNPYIAIAGMVSYIKMT 330 YVIT+P + G +Y++ Sbjct: 296 VYVITHPQPGLLGAGAYLRQA 316 >gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family transcriptional regulator; Provisional. Length = 638 Score = 206 bits (526), Expect = 6e-54 Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 16/320 (5%) Query: 14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQT---SDYENLEHAIQEVIYRKISIRLRSA 70 P LLAD+GGTN RFA +E+ P ++ +DY L AI++ + R+ A Sbjct: 19 PRLLADVGGTNARFA----LETGPGEITQIRVYPGADYPTLTDAIRKYLKDVKIGRVNHA 74 Query: 71 FLAIATPI-GDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYV 129 +AIA P+ GDQ +TN+ W E + F+ +L++NDF A A+A+ L+ + V Sbjct: 75 AIAIANPVDGDQ--VRMTNHDWSFSIEATRRALGFDTLLVVNDFTALAMALPGLTDAQRV 132 Query: 130 SIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIF 189 +G S+ ++GPGTGLG+S +I A D WI + EGGH P +R+ ++ Sbjct: 133 QVGGGTRRQNSVIG---LLGPGTGLGVSGLIPADDRWIALGSEGGHASFAPQDERE-DLV 188 Query: 190 PHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSE--DPIALKA 247 + +S E + +G G+ IY+AL D + + +IV ++ D +AL+A Sbjct: 189 LQYARKKYPHVSFERVCAGPGMEIIYRALAARDKKRVAANVDTAEIVERAHAGDALALEA 248 Query: 248 INLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQ 307 + FC LG AG+LAL A GG+YI GG+ K+ +L SSFR FE K + + Sbjct: 249 VECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLAN 308 Query: 308 IPTYVITNPYIAIAGMVSYI 327 IPTY+IT Y A G+ + + Sbjct: 309 IPTYLITAEYPAFLGVSAIL 328 >gnl|CDD|129832 TIGR00749, glk, glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. Length = 316 Score = 203 bits (519), Expect = 4e-53 Identities = 112/323 (34%), Positives = 165/323 (51%), Gaps = 25/323 (7%) Query: 16 LLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYR---KISIRLRSAF- 71 L+ DIGGTN R A+ E T D+ +LE ++ +Y K+ ++ A Sbjct: 1 LVGDIGGTNARLALCEIAPGEISQAKTYSGLDFPSLEAVVR--VYLEEHKVELKDPIAKG 58 Query: 72 -LAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVS 130 AIA PI +TN+ W EL + F + +INDF A + AI L + + Sbjct: 59 CFAIACPITGD-WVAMTNHTWAFSIAELKQNLGFSHLEIINDFTAVSYAIPGLKKEDLIQ 117 Query: 131 IGQF-VEDNRSLFSSRVIVGPGTGLGISSVIRAKD-SWIPISCEGGHMDIGPSTQRDYEI 188 G + + + I+G GTGLG++ +I D W+ + EGGH+D P+++ + I Sbjct: 118 FGGAEPVEGKPI----AILGAGTGLGVAHLIHQVDGRWVVLPGEGGHVDFAPNSELEAII 173 Query: 189 FPHLTERAE-GRLSAENLLSGKGLVNIYKALCIADGFESNKVLSS-----KDIVSKS--- 239 +L RA+ G +SAE +LSG GLVNIY+AL AD L KDI ++ Sbjct: 174 LEYL--RAKIGHVSAERVLSGPGLVNIYEALVKADPERQFNKLPQENLKPKDISERALAG 231 Query: 240 EDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKS 299 +A++LFC GR AG+LAL RGGVYI+GGI + I+ + S FR +FE+K Sbjct: 232 SCTDCRRALSLFCVIYGRFAGNLALNLGTRGGVYIAGGIVPRFIEFFKASGFRAAFEDKG 291 Query: 300 PHKELMRQIPTYVITNPYIAIAG 322 KE + IP YV+ + + G Sbjct: 292 RMKEYVHDIPVYVVLHDNPGLLG 314 >gnl|CDD|183508 PRK12408, PRK12408, glucokinase; Provisional. Length = 336 Score = 171 bits (434), Expect = 3e-43 Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 19/329 (5%) Query: 8 DFPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSD---YENLEHA-IQEVI--YR 61 P + AD+GGT+VR A+ + + P+ V+ D Y ++ + ++ + Sbjct: 11 AVPRPESFVAADVGGTHVRVAL---VCASPDAAKPVELLDYRTYRCADYPSLAAILADFL 67 Query: 62 KISIRLRSAFLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAIC 121 +R +A A D N W + PE++ +++ + V L+NDFEA A A Sbjct: 68 AECAPVRRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYAAP 127 Query: 122 SLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPS 181 + + + Q ++ +++GPGTGLG + I + + E G + + Sbjct: 128 YMEGNQVL---QLSGPAQAAAGPALVLGPGTGLGAALWIPNGGRPVVLPTEAGQAALAAA 184 Query: 182 TQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVS---- 237 ++ + ++ HL R + E++LSG GL+N+Y+ALC G + V +S ++ Sbjct: 185 SELEMQLLQHL-LRTRTHVPIEHVLSGPGLLNLYRALCALRG--ATPVHASPAAITAAAL 241 Query: 238 KSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFEN 297 +D +A +A+ +FC +LG V GD+AL + ARGGVY++GGI +I D L S F E F N Sbjct: 242 AGDDALAHEALQVFCGFLGSVVGDMALAYGARGGVYLAGGILPQIADFLARSDFVERFLN 301 Query: 298 KSPHKELMRQIPTYVITNPYIAIAGMVSY 326 K P + + Q+P ++ + + + G S+ Sbjct: 302 KGPMRPALEQVPVKLVEHGQLGVLGAASW 330 >gnl|CDD|185540 PTZ00288, PTZ00288, glucokinase 1; Provisional. Length = 405 Score = 50.7 bits (121), Expect = 5e-07 Identities = 72/348 (20%), Positives = 124/348 (35%), Gaps = 83/348 (23%) Query: 19 DIGGTNVRFAILRSMESEPE------FCCTVQTSDY--------ENLEHAIQEVIYRKIS 64 D+GGTN R R ++ + V +D E L+ + +S Sbjct: 32 DVGGTNARVGFAREVQHDDSGVHIIYVRFNVTKTDIRELLEFFDEVLQKLKKN-----LS 86 Query: 65 IRLRSAFLAIATP------------IGDQKSFTLTNYHWVIDPEELISRMQFEDVLLIND 112 R A AI+ P + LT+Y P EL + L+ND Sbjct: 87 FIQRVAAGAISVPGPVTGGQLAGPFNNLKGIARLTDY-----PVELFPPGRSA---LLND 138 Query: 113 FEAQALAICSLSCSN--------------YVSIGQFVEDNRSLFSSR-VIVGPGTGLGIS 157 EA A + ++S + + ++ + + R +++ PGTGLG S Sbjct: 139 LEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSS 198 Query: 158 SVIRA--KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIY 215 + D +I I E GH+ I D + L + ++ + S + IY Sbjct: 199 LIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDS--TVYPIY 256 Query: 216 KALCIADGFESN---------------KVLSSKDIVSKSEDPIALKAINLFCEYLGRVAG 260 + + G E N + + D A+KA+ +YL R+A Sbjct: 257 EDIVSGRGLEFNYAYEKRGNKPSAPLKEAAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAA 316 Query: 261 DLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQI 308 ++++ F+ V + I + NS F F+N K+L +I Sbjct: 317 EISMQFLPLTVVLMGDNI-------VYNSFF---FDNPENVKQLQARI 354 >gnl|CDD|184386 PRK13906, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional. Length = 307 Score = 29.4 bits (66), Expect = 1.4 Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 46 SDYENLEHAIQEVIYRKISIRLRSAFLAIATP 77 +DYENL H +Q+ + K I L I Sbjct: 272 TDYENLIHYVQKTVKEKFGIELNREVRIIGEH 303 >gnl|CDD|162017 TIGR00744, ROK_glcA_fam, ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. Length = 318 Score = 27.2 bits (60), Expect = 6.0 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 22/109 (20%) Query: 203 ENLLSGKGLVNIYKALCIADGFESNKV-------LSSKDI--VSKSEDPIALKAINLFCE 253 E S GLV K + +S+K + ++ DP+A+ + Sbjct: 178 ETYASATGLVRYAKRANAKPERAEVLLALGDGDGISAKHVFVAARQGDPVAVDSYREVAR 237 Query: 254 YLGRVAGDLALI-----FMARGGVYISGGIPYKIIDLLRNSSFRESFEN 297 + G DLA + + GG+ +G DLL R+S++ Sbjct: 238 WAGAGLADLASLFNPSAIVLGGGLSDAG-------DLLL-DPIRKSYKR 278 >gnl|CDD|185617 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional. Length = 574 Score = 26.9 bits (59), Expect = 7.6 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Query: 190 PHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAIN 249 PH+ E + RL+ L K +N+ I GF+ ++L+ + + P AIN Sbjct: 272 PHVWEFS--RLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTP---AAIN 326 Query: 250 LFCEYLG 256 FCE +G Sbjct: 327 RFCELVG 333 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0607 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,732,672 Number of extensions: 368320 Number of successful extensions: 705 Number of sequences better than 10.0: 1 Number of HSP's gapped: 686 Number of HSP's successfully gapped: 10 Length of query: 348 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 254 Effective length of database: 3,963,321 Effective search space: 1006683534 Effective search space used: 1006683534 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.4 bits)