RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus
Liberibacter asiaticus str. psy62]
(348 letters)
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding,
transferase; HET: MSE BGC; 2.20A {Escherichia coli}
SCOP: c.55.1.7 PDB: 1q18_A*
Length = 332
Score = 144 bits (362), Expect = 3e-35
Identities = 93/318 (29%), Positives = 150/318 (47%), Gaps = 8/318 (2%)
Query: 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAI 74
L+ D+GGTN R A+ E T DY +LE I+ + + + ++ +AI
Sbjct: 16 ALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYL-EEHKVEVKDGCIAI 74
Query: 75 ATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQF 134
A PI +TN+ W E+ + F + +INDF A ++AI L + + G
Sbjct: 75 ACPI-TGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGA 133
Query: 135 VEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHLTE 194
+ G GTGLG++ ++ W+ + EGGH+D P+++ + I L
Sbjct: 134 EPVEGKPI---AVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEIL-R 189
Query: 195 RAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAINLFC-- 252
G +SAE +LSG GLVN+Y+A+ AD + D L
Sbjct: 190 AEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLFC 249
Query: 253 EYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYV 312
+GR G+LAL GGV+I+GGI + ++ + S FR +FE+K KE + IP Y+
Sbjct: 250 VIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYL 309
Query: 313 ITNPYIAIAGMVSYIKMT 330
I + + G ++++ T
Sbjct: 310 IVHDNPGLLGSGAHLRQT 327
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase;
HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Length = 373
Score = 128 bits (323), Expect = 1e-30
Identities = 52/353 (14%), Positives = 116/353 (32%), Gaps = 36/353 (10%)
Query: 5 SKKDFPIAFPVLLADIGGTNVRFAILRSMESEPEFCC----TVQTSDYENLEHAIQEVI- 59
K A + D+GGT+ R +R +++ C +++ D + E+I
Sbjct: 21 LKTPAWNAPLTFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKRKDITEIIEFFNEIIE 80
Query: 60 --YRKISIRLRSAFLAIATPI-GDQKSFTLTNYHWVIDPEE-LISRMQFEDVLLINDFEA 115
+ R+++ + + P+ G N + + + ++ND EA
Sbjct: 81 LMPASVMKRVKAGVINVPGPVTGGAVGGPFNNLKGIARLSDYPKALFPPGHSAILNDLEA 140
Query: 116 QALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVI--------------- 160
+ ++S ++ S V + + + G+ +G +
Sbjct: 141 GGFGVLAVSDAHVFSEYFGVMWEGTQWRTCEQEPAGSVIGRGRCLVLAPGTGLGSSLIYY 200
Query: 161 -RAKDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALC 219
+ I + E G + DY H + + EN++SG GL Y+ +
Sbjct: 201 NPPMNQHIVVPLELGSQTLPMRKDIDYIQTLHA--ELKLFPNYENMVSGAGLEFHYRQVV 258
Query: 220 IADGFESNKVLSSKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMAR-----GGVYI 274
+ ++ D A KA+ + EYL RV + ++ + G +
Sbjct: 259 RGSRPPCS--AGEIAKLASEGDANACKAMKKYHEYLMRVGSEASMALLPLTIVLVGDNIV 316
Query: 275 SGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPY-IAIAGMVSY 326
+ Y+ L+ E+ ++ ++ + + G
Sbjct: 317 NNAFFYRNPQNLK-EMHHEALNHEMERFGFQSRVSYLRQKKLLNLNLMGCYRC 368
>3mcp_A Glucokinase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
transferase; 3.00A {Parabacteroides distasonis}
Length = 366
Score = 75.4 bits (185), Expect = 2e-14
Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 30/276 (10%)
Query: 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVI--YRKISIRLRSAFL 72
V+ D GGTN F+ ++ + V + + L+ + ++ ++ I L A +
Sbjct: 11 VMTLDAGGTNFVFSAIQ--GGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPV 68
Query: 73 AI--ATP-IGDQK------SFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSL 123
AI A P D + ++ + + + V + ND A
Sbjct: 69 AISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGEALT 128
Query: 124 SCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQ 183
++ + + + + V GTG G + V+ + + GG+ +
Sbjct: 129 GVLPEINRRLREAGSTKRYKNLLGVTLGTGFG-AGVVIDGELLRGDNAAGGY--VW---- 181
Query: 184 RDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNK-VLSSKDIVSKSEDP 242
L + E +S + ++ +Y G + K + + +
Sbjct: 182 -------CLRNKKYPEYIVEESVSIRAVMRVYAERSGDAGARTPKEIFEIAEGIRPGNRE 234
Query: 243 IALKAINLFCEYLGRVAGDLALIFMARGGVYISGGI 278
A+ A E G + + I GG+
Sbjct: 235 AAIAAFEELGEMAGDALASAITLIDGL--IVIGGGL 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 61.9 bits (150), Expect = 2e-10
Identities = 62/361 (17%), Positives = 107/361 (29%), Gaps = 148/361 (40%)
Query: 16 LLADIGG---TNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFL 72
L+A GG T+ F LR + Y+ + ++I + + L L
Sbjct: 156 LVAIFGGQGNTDDYFEELRDL--------------YQTYHVLVGDLI-KFSAETLSE--L 198
Query: 73 AIATPIGDQKSFT--LTNYHWVIDPEELISRMQFEDVLLINDFEAQA-----LAICSLSC 125
T + +K FT L W+ +P + D D+ L I +
Sbjct: 199 I-RTTLDAEKVFTQGLNILEWLENPS---NT---PDK----DYLLSIPISCPL-IGVIQL 246
Query: 126 SNY--------VSIGQFVEDNRSLFSSRVIVGPGT-----GLGISSVIRAKDSW------ 166
++Y + G+ RS G GL + I DSW
Sbjct: 247 AHYVVTAKLLGFTPGEL----RSYLK-------GATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 167 --------IPISCEG----GHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNI 214
I + + PS D E EG S +LS L
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL------ENNEGVPSP--MLSISNLT-- 345
Query: 215 YKAL-CIADGFESNKVL-SSKDIVSKSEDPIALKAINLFCEYLGR----VAGDLALIFMA 268
+ + + ++N L + K + I+L +N G V+G
Sbjct: 346 QEQVQDYVN--KTNSHLPAGKQVE------ISL--VN------GAKNLVVSG-------- 381
Query: 269 RGGVYISGGIPYKIIDLLR-NSSFRE------SFENKSPHKELMRQIPTYV-----ITNP 316
P + L N + R+ +++ P E R+ + + +P
Sbjct: 382 ----------PPQ--SLYGLNLTLRKAKAPSGLDQSRIPFSE--RK-LKFSNRFLPVASP 426
Query: 317 Y 317
+
Sbjct: 427 F 427
Score = 60.3 bits (146), Expect = 6e-10
Identities = 70/438 (15%), Positives = 118/438 (26%), Gaps = 207/438 (47%)
Query: 38 EFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHWVIDPE- 96
E V T+ + +L+ F I + F + +P
Sbjct: 17 EHVLLVPTASFFIAS-------------QLQEQFNKILPEPTE--GFAADD-----EPTT 56
Query: 97 --ELISRM--------------QFEDVL--LINDFEAQALA-------ICSLS------- 124
EL+ + QF+ VL + +FE L L
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 125 ------CSNY---------------------------VSI-----GQ-----FVEDNRSL 141
NY + GQ + E+ R L
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 142 FSS-RVIVGPGTGLGISSV-------IRAKDSWIPISCEGGHMDI-----GPSTQ--RDY 186
+ + V+VG L I IR + +G ++I PS +DY
Sbjct: 177 YQTYHVLVGD---L-IKFSAETLSELIRTTLDAEKVFTQG--LNILEWLENPSNTPDKDY 230
Query: 187 EI-----FP--------H--LTERAEGRLSAE--NLLSG-----KGLVNIYKALCIA--- 221
+ P H +T + G E + L G +GLV A+ IA
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT---AVAIAETD 287
Query: 222 --DGFESNKVLSSKDIVSKSEDPIALKAIN-LFCEYLG----RVAGDLAL---IF---MA 268
+ F + KAI LF ++G + +L I +
Sbjct: 288 SWESFFVS----------------VRKAITVLF--FIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 269 RG-GV-----YISGGIPY----KIIDLLRNSSFRESFENKSPHKELMRQI-------PT- 310
GV IS + ++ NS +Q+
Sbjct: 330 NNEGVPSPMLSISN-LTQEQVQDYVNKT-NSHLPAG-----------KQVEISLVNGAKN 376
Query: 311 YVITNPYIAIAGMVSYIK 328
V++ P ++ G+ ++
Sbjct: 377 LVVSGPPQSLYGLNLTLR 394
Score = 60.3 bits (146), Expect = 7e-10
Identities = 55/346 (15%), Positives = 100/346 (28%), Gaps = 140/346 (40%)
Query: 8 DF----PIAFPVLLADIGGTN-VRFAIL-RSMESEP-EFC----------------CTVQ 44
D+ PI+ P+ IG + + + + P E +
Sbjct: 229 DYLLSIPISCPL----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 45 TSD-----YENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHWVIDP---- 95
+D + ++ AI V++ I +R +++ T+ + P
Sbjct: 285 ETDSWESFFVSVRKAI-TVLFF---IGVRC-----------YEAYPNTS----LPPSILE 325
Query: 96 ------EELISRMQFEDVLLINDFEAQALA--I----CSLSCSNYVSIGQFVEDNRSLFS 143
E + S M L I++ + + + L V I SL +
Sbjct: 326 DSLENNEGVPSPM-----LSISNLTQEQVQDYVNKTNSHLPAGKQVEI--------SLVN 372
Query: 144 SR---VIVGPGTGL-GISSVIRAKDSWIPISCEGGHMD---IGPSTQRDYEI-------- 188
V+ GP L G++ +R G +D I P ++R +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRK------AKAPSG-LDQSRI-PFSERKLKFSNRFLPVA 424
Query: 189 --F--PHL---TERAEGRLSAENL-LSGKGL-VNIYKALCIADGFESNKVLSSKDIVSKS 239
F L ++ L N+ + K + + +Y DG D+ S
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY---DTFDG---------SDLRVLS 472
Query: 240 ED--PIALKAINLFCEYLGRVAGDLALIFMA-------RGGVYISG 276
+ I V + F A GG SG
Sbjct: 473 GSISERIVDCI--IRL---PVKWETTTQFKATHILDFGPGG--ASG 511
Score = 48.0 bits (114), Expect = 3e-06
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 66/162 (40%)
Query: 61 RKISIRLRSAFLAIATPIGDQKSFTLTNYH--WVIDPEELI-SRMQFEDV------LLI- 110
RK+ R FL +A+P +H ++ +LI + +V + I
Sbjct: 412 RKLKFSNR--FLPVASP-----------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 111 -------NDFEAQ------AL--AICSLSCSNYVSIGQFVEDNRSLFSSRVIV-GPGTGL 154
+D + I L + + QF ++ ++ GPG G
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPV-KWETTTQFK-------ATHILDFGPG-GA 509
Query: 155 -GISSVI-RAKDSWIPISCEG--------GHMDIGPSTQRDY 186
G+ + R KD G G +DI P +
Sbjct: 510 SGLGVLTHRNKD--------GTGVRVIVAGTLDINPDDDYGF 543
Score = 27.6 bits (61), Expect = 4.4
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 27/114 (23%)
Query: 38 EFCCTVQTSDYENLEHAIQEVIYRKISIRL--------RSAFLAIATPIGD-QKSFTLTN 88
E+ +D ++E ++ V YR +++++ RS + IA G SF+
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 89 YHWVIDPEELISRMQFEDVLLIN-DFEAQALAICSLSCSNYVSIGQFVEDNRSL 141
+V+ E + + V ++N + E Q YV+ G D R+L
Sbjct: 1826 LQYVV---ERVGKRTGWLVEIVNYNVENQ----------QYVAAG----DLRAL 1862
>3eo3_A Bifunctional UDP-N-acetylglucosamine 2-
epimerase/N-acetylmannosamine kinase; non-protein
kinase, sialic acid biosynthesis; 2.84A {Homo sapiens}
Length = 333
Score = 49.7 bits (117), Expect = 8e-07
Identities = 41/289 (14%), Positives = 80/289 (27%), Gaps = 19/289 (6%)
Query: 9 FPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLR 68
F L D+GGTN+R AI+ + YE + I ++ + ++
Sbjct: 16 FQGTLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVK 75
Query: 69 SAFLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNY 128
+ I + + + + ++D + + +
Sbjct: 76 LNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDTLHLPVWVDNDGNCAA 135
Query: 129 VSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEI 188
++ +F + +I G G G GI + E GH+ +
Sbjct: 136 LAERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAELGHLVVSLDGPDCSCG 195
Query: 189 FPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSED------- 241
E SG L K L D + KD +
Sbjct: 196 SHG---------CIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHLIQAAKL 246
Query: 242 --PIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRN 288
A + LG ++ V +SG + I ++++
Sbjct: 247 GNAKAQSILRTAGTALGLGVVNILHTMNP-SLVILSGVLASHYIHIVKD 294
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.02A {Enterococcus faecalis V583}
Length = 326
Score = 45.5 bits (106), Expect = 2e-05
Identities = 49/286 (17%), Positives = 98/286 (34%), Gaps = 24/286 (8%)
Query: 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAI 74
++ D+GGT ++FAIL + + + +++T+ E+ +H + +I
Sbjct: 8 IIGIDLGGTTIKFAIL-TTDGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNMKKE 66
Query: 75 ATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQF 134
+ + + A + + +N ++G+
Sbjct: 67 DFVGIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAALGER 126
Query: 135 VEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIP--ISCEGGHMDIGPSTQRDYEIFPHL 192
+ + + GTG+G V K + E GH+ + P+
Sbjct: 127 WKGAGENNPDVIFITLGTGVGGGIVAAGKLLHGVAGCAGEVGHVTVDPNGFDCTCGKRGC 186
Query: 193 TERAEGRLSAENLLSGKGLVNIYKALC--------IADGFESNKVLSSKDIVSKSED--P 242
E + S G+V + + L + + + +SSKD+ +E
Sbjct: 187 L---------ETVSSATGVVRVARHLSEEFAGDSELKQAIDDGQDVSSKDVFEFAEKGDH 237
Query: 243 IALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRN 288
AL ++ C YLG G+L V I GG+ + LR+
Sbjct: 238 FALMVVDRVCFYLGLATGNLGNTLNPD-SVVIGGGVS-AAGEFLRS 281
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI,
protein structure initiative; 2.00A {Vibrio cholerae o1
biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Length = 429
Score = 44.5 bits (104), Expect = 3e-05
Identities = 36/277 (12%), Positives = 79/277 (28%), Gaps = 20/277 (7%)
Query: 10 PIAFPVLLADIGGTNVRFAIL-RSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLR 68
+ + L +G + A+ E + + D +++ + I
Sbjct: 105 NLGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAA 164
Query: 69 SAFLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNY 128
+ I + P + + + +A + + +
Sbjct: 165 QLDRVTSIAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKATGLPVFVANDTRAWALA 224
Query: 129 VSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEI 188
+ +D + + G G G D + G ++G +I
Sbjct: 225 EKLFGHSQDVDNSVLISIHHGLGAG-------IVLDGRVLQGRHGNIGELGH-----IQI 272
Query: 189 FPHLTERAEGRLSAEN-LLSGKGLVNIYKALCIA---DGFESNKVLSSKDIVSKSED--P 242
P G + S + + + A A + + +S +DI + + D P
Sbjct: 273 DPQGKRCHCGNYGCLETVASSQAIRDQVTARIQAGEPSCLATVEEISIEDICAAAADGDP 332
Query: 243 IALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIP 279
+A+ I YLG + +F + I G I
Sbjct: 333 LAVDVIQQLGRYLGAAIAIVINLFNPE-KILIGGVIN 368
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar
kinase, ribonuclease H fold, sugar kinase/HSP70/actin
superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo
sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Length = 347
Score = 41.9 bits (97), Expect = 2e-04
Identities = 32/316 (10%), Positives = 70/316 (22%), Gaps = 35/316 (11%)
Query: 19 DIGGTNVRFA-------ILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKIS-IRLRSA 70
+ GGT IL + + I E++ R +
Sbjct: 12 EGGGTRSEVLLVSEDGKILAEADGLS---TNHWLIGTDKCVERINEMVNRAKRKAGVDPL 68
Query: 71 FLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVS 130
+ + +I+ E L+ D +S
Sbjct: 69 VPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLIS 128
Query: 131 IGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFP 190
L + G G WI D + +
Sbjct: 129 GTGSN---CRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIG 185
Query: 191 HLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVS---KSEDPIALKA 247
++ + + L + F+ + ++ + DP++
Sbjct: 186 YVKQAMFHYFQVPDRLGILTHL--------YRDFDKCRFAGFCRKIAEGAQQGDPLSRYI 237
Query: 248 INLFCEYLGRVAGDLALIF-------MARGGVYISGGIPYKIIDLLRNSSFRESFENKSP 300
E LGR + + G + +K +LL+ F +
Sbjct: 238 FRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSV-WKSWELLKE-GFLLALTQGRE 295
Query: 301 HKELMRQIPTYVITNP 316
+ ++ +
Sbjct: 296 -IQAQNFFSSFTLMKL 310
>3lm2_A Putative kinase; structural genomics, joint center for structural
genomics, JCSG, protein structure initiative, PSI-2,
transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 41.0 bits (96), Expect = 4e-04
Identities = 29/207 (14%), Positives = 63/207 (30%), Gaps = 36/207 (17%)
Query: 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAI 74
VL DIGG++V+ + + E + +T + A+ + + +A+
Sbjct: 8 VLAIDIGGSHVKIGLS--TDGEERKVESGKTMTGPEMVAAVTAMA-----KDMTYDVIAM 60
Query: 75 ATP---IGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSI 131
P + ++ N + V ++ND QA+
Sbjct: 61 GYPGPVVHNKPLREPVNLGEGWVGYDYEGAFGRP-VRIVNDALMQAIG------------ 107
Query: 132 GQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPH 191
+ +G GTGLG + ++ E H+ ++ +
Sbjct: 108 -------SYNGGRMLFLGLGTGLGAAMIVENV----AQPMEIAHLPYRKGKTYEHYVSEA 156
Query: 192 LTERAEGRLSAENLLSGKGLVNIYKAL 218
E+ + + + + AL
Sbjct: 157 YREKKGNAKWQKRV--QDVVERLSAAL 181
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23,
structural genomics, PSI, protein structure initiative;
2.20A {Chromobacterium violaceum atcc 12472} SCOP:
c.55.1.5 c.55.1.5
Length = 305
Score = 40.5 bits (93), Expect = 6e-04
Identities = 36/270 (13%), Positives = 61/270 (22%), Gaps = 18/270 (6%)
Query: 19 DIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPI 78
D GGT R + + + P S + + + + A L A
Sbjct: 17 DGGGTGTRIRLH-ASDGTPLAMAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPAS 75
Query: 79 GDQKSFTLTNYHWVIDPEELISR-MQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVED 137
L+ H E S+ F + L D L V++G
Sbjct: 76 ACAIGLGLSGVHNRQWAGEFESQAPGFARLSLATDGYTTLLGAHGGQPGIIVALGTGSIG 135
Query: 138 NRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAE 197
G G + LT
Sbjct: 136 EALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMA------LDGRHSHSPLTRAVL 189
Query: 198 GRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAINLFCEYLGR 257
+ ++ A ++ + + DP A + E
Sbjct: 190 ----DFVGGDWQAMMAWNGRATPAQFARLAPLV----LSAARVDPEADALLRQAGEDAWA 241
Query: 258 VAGDLALIFMARGGVYISGGIPYKIIDLLR 287
+A L V + GG+ + D L
Sbjct: 242 IARALDPQDELP--VALCGGLGQALRDWLP 269
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural
genomics, protein structure initiative, midwest center
for structural genomics; HET: MLY MSE MLZ ADP; 1.66A
{Bacillus subtilis} PDB: 1xc3_A
Length = 302
Score = 39.5 bits (91), Expect = 0.001
Identities = 42/316 (13%), Positives = 85/316 (26%), Gaps = 53/316 (16%)
Query: 19 DIGGTNVRFAILRSMESEPEFCCTVQTSDYEN----LEHAIQEVIYRKISIRLRSAFLAI 74
+ GGT A+ + T + + + + I I +F +
Sbjct: 9 EAGGTXFVCAVG-REDGTIIDRIEFPTXMPDETIEXVIQYFSQFSLQAIGI---GSFGPV 64
Query: 75 ATPIGDQKSFTLTN---YHWV-IDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVS 130
Q T+T W + + V D A AL + +
Sbjct: 65 DNDXTSQTYGTITATPXAGWRHYPFLQTVXNEMXIPVGFSTDVNAAALGEFLFGEAXGLD 124
Query: 131 IGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFP 190
++ GTG+G +++ + E GH+ I Y+
Sbjct: 125 SCLYITI-------------GTGIGAGAIVEGRLLQGLSHPEMGHIYIRRHPDDVYQGXC 171
Query: 191 HLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAINL 250
E L SG + + ++ + L
Sbjct: 172 PYHGDC-----FEGLASGPAIEARW-------------------GXKAADLSDIAQVWEL 207
Query: 251 FCEYLGRVAGDLALIFMARGGVYISGGIP--YKIIDLLRNSSFRESFENKSPHKELMRQI 308
Y+ + LI + + GG+ ++ + + + EL I
Sbjct: 208 EGYYIAQALAQYILILAP-XXIILGGGVMQQXQVFSYIYQ-YVPKIMNSYLDFSELSDDI 265
Query: 309 PTYVITNPYIAIAGMV 324
Y++ + AG++
Sbjct: 266 SDYIVPPRLGSNAGII 281
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 1.95A {Escherichia coli
k-12}
Length = 310
Score = 38.4 bits (88), Expect = 0.002
Identities = 47/289 (16%), Positives = 84/289 (29%), Gaps = 31/289 (10%)
Query: 19 DIGGTNVRFAILRSMESEPEFCCTVQT--SDYENLEHAIQEVIYRKI-SIRLRSAFLAIA 75
D+G T++RF + + E E C +T L I E+I ++ R L +
Sbjct: 13 DMGATHIRFCLR-TAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMG 71
Query: 76 TPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFV 135
P K + P ++ D+ + S + +S
Sbjct: 72 FPALVSKD----KRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSWDVVE 127
Query: 136 EDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHLTER 195
+G G G + ++ E GH+ +G TQ
Sbjct: 128 NRLTQQLVLAAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCA--------- 178
Query: 196 AEGRLSAENLLSGKGLVNIYKAL----CIADGFESNKVLSSKDIVSKSEDPIALKAINLF 251
E SG L Y+ + D F + + ++ +INLF
Sbjct: 179 CGNPGCLETNCSGMALRRWYEQQPRNYPLRDLFVHAENAPFVQSLLENAARAIATSINLF 238
Query: 252 CEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSP 300
D + + GGV P + + + R ++
Sbjct: 239 ---------DPDAVILG-GGVMDMPAFPRETLVAMTQKYLRRPLPHQVV 277
>2ap1_A Putative regulator protein; zinc binding protein, structural
genomics, PSI, protein structure initiative; 1.90A
{Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Length = 327
Score = 36.6 bits (83), Expect = 0.009
Identities = 39/280 (13%), Positives = 72/280 (25%), Gaps = 18/280 (6%)
Query: 19 DIGGTNVRFAILRSMESEPEFCCTVQT--SDYENLEHAIQEVIYRKISIRLRSAFLAIAT 76
DIGGT + + ++ V T + Y A+ E++ + I
Sbjct: 30 DIGGTKIALGVF-DSTRRLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGI 88
Query: 77 PIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVE 136
P + V R L D A C +
Sbjct: 89 PGMPETEDGTLYAANVPAASGKPLRADLSAR-LDRDVRLDNDANCFALSEAWDDEFTQYP 147
Query: 137 DNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERA 196
+I+G G G G+ + I+ E GHM + L
Sbjct: 148 LVM-----GLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCG 202
Query: 197 EGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAINLFCEYLG 256
G++ ++ + + + D A + + + L
Sbjct: 203 CGQMGCIENYLSGRGFAWLYQHY----YDQSLQAPEIIALWEQGDEQAHAHVERYLDLLA 258
Query: 257 RVAGDLALIFMAR-----GGVYISGGIPYKIIDLLRNSSF 291
G++ I GG+ I ++ + L
Sbjct: 259 VCLGNILTIVDPDLLVIGGGLSNFTAITTQLAERLPRHLL 298
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 35.6 bits (81), Expect = 0.018
Identities = 29/178 (16%), Positives = 51/178 (28%), Gaps = 13/178 (7%)
Query: 14 PVLLADIGGTNVRFAILRS----MESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRS 69
P++ DIGGT ++ I+ + E T Q + E++ A+ V+ + R
Sbjct: 13 PLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAE---LSARP 69
Query: 70 AFLAIATPIG-DQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNY 128
A +P+G + D LL I +
Sbjct: 70 EAPAAGSPVGVTFPGIIQHGVVHSAANVDKSWLNTDIDALLTARLGRPVEVINDADAAGL 129
Query: 129 VSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDY 186
+ +G G G D + + E GH++I
Sbjct: 130 AEARYGAGAGVKGTVLVITLGTGIGSAFIF-----DGKLVPNAELGHLEIDGHDAETK 182
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein structure
initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10
c.55.1.10
Length = 289
Score = 31.7 bits (70), Expect = 0.26
Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 19/168 (11%)
Query: 19 DIGGTNVRFAI------LRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFL 72
DIGGT + A+ +R P T + E L A+ ++ S
Sbjct: 7 DIGGTKLAAALIGADGQIRDRRELP----TPASQTPEALRDALSALV---------SPLQ 53
Query: 73 AIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIG 132
A A + + + + + + + ++ + I
Sbjct: 54 AHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWAE 113
Query: 133 QFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGP 180
D + V G G G+ S + ++ GH P
Sbjct: 114 FQALDGDITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLADP 161
>2gti_A Replicase polyprotein 1AB; MHV, NSP15, F307L, viral protein; 2.15A
{Murine hepatitis virus strain A59} SCOP: c.66.1.48
d.294.1.2 PDB: 2gth_A
Length = 370
Score = 30.3 bits (68), Expect = 0.66
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 189 FPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDI-VSKSEDPIALKA 247
+R+ L + + + D + + V S V K D +++
Sbjct: 56 VELFAKRSIRPHPELKLFRNLNIDVCWS-HVLWD-YAKDSVFCSSTYKVCKYTDLQCIES 113
Query: 248 INLFCEYLGRVAGDLALIFMARGGVYIS 275
+N+ + GR G L R GVYI+
Sbjct: 114 LNVLFD--GRDNGALEAFKKCRNGVYIN 139
>2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural
genomics, PSI, protein structure initiative; HET: SUC;
2.01A {Streptococcus pneumoniae TIGR4} SCOP: c.55.1.10
c.55.1.10
Length = 292
Score = 29.8 bits (65), Expect = 1.0
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAF 71
A + DIGGT ++FA L + + S ENLE + + R
Sbjct: 3 AMTIATIDIGGTGIKFASL---TPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIA 59
Query: 72 LAIATPIGDQKSFTLTNYHW 91
+++ + +
Sbjct: 60 MSVPGAVNQETGVIDGFSAV 79
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily,
ribonuclease-H fold, sugar kinase, glucose,
conformational change; HET: BGC; 1.65A {Sulfolobus
tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Length = 299
Score = 29.4 bits (64), Expect = 1.3
Identities = 22/189 (11%), Positives = 47/189 (24%), Gaps = 17/189 (8%)
Query: 19 DIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPI 78
D GGT + E + N + I ++ A A +
Sbjct: 8 DAGGTKTKAVAY-DCEGNFIGEGSSGPG---NYHNVGLTRAIENIKEAVKIAAKGEADVV 63
Query: 79 GDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDN 138
G + + + W ++ + V++ +D A V G
Sbjct: 64 GMGVAGLDSKFDWEN--FTPLASLIAPKVIIQHDGVIALFAETLGEPGVVVIAGTGSVVE 121
Query: 139 RSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFP--HLTERA 196
+ VG L + G + + + L +
Sbjct: 122 GYNGKEFLRVGGRGWLLS---------DDGSAYWVGRKALRKVLKMMDGLENKTILYNKV 172
Query: 197 EGRLSAENL 205
++ ++L
Sbjct: 173 LKTINVKDL 181
>1e4f_T Cell division protein FTSA; bacterial cell division, actin family;
1.9A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB:
1e4g_T*
Length = 419
Score = 29.0 bits (64), Expect = 1.5
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 18/115 (15%)
Query: 1 MNNISKKDFPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQT----------SDYEN 50
M ++SK F + DIG ++ +L + E E D
Sbjct: 1 MIDLSKTVFYTSI-----DIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIA 55
Query: 51 LEHAIQEVI---YRKISIRLRSAFLAIATPIGDQKSFTLTNYHWVIDPEELISRM 102
+ ++ ++ ++ LRS F+ + + ++ T+ + + + +
Sbjct: 56 FKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDI 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.7
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 96 EELISRMQFEDVLLINDFEAQALAI 120
++ + ++Q + L D A ALAI
Sbjct: 19 KQALKKLQ-ASLKLYADDSAPALAI 42
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor,
actin-binding, ATP-binding, cytoplasm, cytoskeleton,
nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 174
Score = 27.0 bits (60), Expect = 7.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 257 RVAGDLALIFM---ARGGVYISGGIPYKIID----LLRNSSFRESFENKSP 300
G++A++ + RG Y + IID L R + F +FE K P
Sbjct: 15 PTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGP 65
>3bon_A Neurotoxin A; metalloprotease; 1.20A {Clostridium botulinum} SCOP:
d.92.1.7 PDB: 3bok_A 3boo_A 2ilp_A* 2ima_A* 2imb_A*
2imc_A 2w2d_A 3c8b_A 3bwi_A 3c88_A 3c89_A 3c8a_A 3dda_A
3ddb_A 2isg_A 2ise_A 2ish_A 1xtg_A 1xtf_A 3ds9_A* ...
Length = 425
Score = 26.7 bits (59), Expect = 8.8
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 273 YISGGIPYKIIDLLRNSSFRESFENKSP-----HKELMRQIPTYVITNPY 317
GG K ID L+ + FR + NK + + T
Sbjct: 264 RTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYM 313
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2,
protein structure initiative, joint center for
structural genomics, JCSG; 2.46A {Thermotoga maritima}
SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Length = 380
Score = 26.5 bits (57), Expect = 8.8
Identities = 33/271 (12%), Positives = 75/271 (27%), Gaps = 32/271 (11%)
Query: 10 PIAFPVLLADIGGTNVRFAI--LRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRL 67
P VL ++ + + E SD E + + +I R +
Sbjct: 84 PNCAYVLGIEVTRDEIAACLIDASMNILAHEAHPLPSQSDREETLNVMYRIIDRAKD-MM 142
Query: 68 RSAFLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSN 127
++ T +IDP LL + + + + ++
Sbjct: 143 EKLGSKLSALTVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKEKYGIE---VWVENDAD 199
Query: 128 YVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYE 187
++G+ R + ++ G G G GI + E G+ + + +
Sbjct: 200 MGAVGEKWYTKRDDSFAWILTGKGIGAGIIIDGELYRGENGYAGEIGYTRVFNGNEYVFL 259
Query: 188 IFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKA 247
E++ + ++ ++ + E+ S D +
Sbjct: 260 ---------------EDVCNENVVLKHVLSMGFSSLAEAR----------DSGDVRVKEY 294
Query: 248 INLFCEYLGRVAGDLALIFMARGGVYISGGI 278
+ Y +L +F + I G
Sbjct: 295 FDDIARYFSIGLLNLIHLFGIS-KIVIGGFF 324
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.139 0.409
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,044,556
Number of extensions: 140159
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 35
Length of query: 348
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 255
Effective length of database: 3,438,538
Effective search space: 876827190
Effective search space used: 876827190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)