HHsearch alignment for GI: 254780281 and conserved domain: TIGR02738
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; InterPro: IPR014109 This entry includes thiol-disulphide isomerase (TrbB), a protein that is involved in conjugative transfer of plasmid DNA, specifically in the F-type system. TrbB has been predicted to contain a thioredoxin fold, it also contains a conserved pair of cysteines and has been shown to function as a thiol disulphide isomerase by complementation of Escherichia coli DsbA mutants . TtbB is believed to be involved in pilin assembly . TrbB is closely related to TraF (IPR014110 from INTERPRO) though somewhat longer lacking the cysteine motif and is apparently not functional as a disulphide bond isomerase..
Probab=96.57 E-value=0.066 Score=32.35 Aligned_cols=107 Identities=21% Similarity=0.342 Sum_probs=68.6
Q ss_pred HCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHH
Q ss_conf 49967999960477765446888877655543024433305887651433333057777753136864224589889898
Q gi|254780281|r 54 LYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMR 133 (201)
Q Consensus 54 ~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~ 133 (201)
T Consensus 69 ~~~~~~~vfF~~S~CP-yCh~FAP~LK~f~~~~~-----~~V~a~SlDG~g~---------~~FP~~---~P~tpE~~~~ 130 (176)
T TIGR02738 69 LLDDYALVFFYQSTCP-YCHQFAPVLKRFSQQFG-----LSVYAFSLDGQGL---------AEFPDA---LPATPEVMQT 130 (176)
T ss_pred HHHCCEEEEEECCCCC-CCCCCCHHHHHHHHHCC-----CCEEEEEECCCCC---------CCCCCC---CCCCHHHHHH
T ss_conf 4443507888628896-40022657787887628-----7537887338978---------778876---5787657876
Q ss_pred HHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEE-EEECCCCCHHHHHHHHHHHH
Q ss_conf 88860908862256556777752587420699985898299-98578988899999999998
Q gi|254780281|r 134 VAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIV-GVIPYKDDSDSAIEKINRLI 194 (201)
Q Consensus 134 l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~-~~~~~~~~~~~i~~~i~~ll 194 (201)
T Consensus 131 ~---F~-------------~~ey~~~~~PalFLvNvnt~~~~~v~~G~~~~~~L~~r~~~~~ 176 (176)
T TIGR02738 131 F---FP-------------NGEYRPVVTPALFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 176 (176)
T ss_pred H---CC-------------CCCCCEECCCEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 3---38-------------8970301023223331537888764338767899999998729