HHsearch alignment for GI: 254780281 and conserved domain: cd02951
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.91 E-value=0.00017 Score=47.97 Aligned_cols=106 Identities=13% Similarity=0.289 Sum_probs=69.0
Q ss_pred CC-CEEEEEEECCCCCCCCHHHHHHH---HHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHH
Q ss_conf 99-67999960477765446888877---655543024433305887651433333057777753136864224589889
Q gi|254780281|r 55 YI-KPSIVFFGFTNCSAVCPTTLSRL---DRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPID 130 (201)
Q Consensus 55 ~G-k~~li~F~~T~Cpd~Cp~~l~~l---~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~ 130 (201)
T Consensus 12 ~~~Kpvlv~f~~~~C~-~C~~m~~~~~~~~~v~~~l~~-----~f~~v~vd~~~~~~~--~~-----------f~g~~~~ 72 (125)
T cd02951 12 DGKKPLLLLFSQPGCP-YCDKLKRDYLNDPAVQAYIRA-----HFVVVYINIDGDKEV--TD-----------FDGEALS 72 (125)
T ss_pred CCCCEEEEEEECCCCH-HHHHHHHHHCCCHHHHHHHHC-----CCEEEEEECCCCCCC--CC-----------CCCCCCC
T ss_conf 3898499999789897-089999984399999999961-----814788761567530--03-----------4556443
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCC-CCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 8988886090886225655677775258742069998589-829998578988899999999998514
Q gi|254780281|r 131 VMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTA-GSIVGVIPYKDDSDSAIEKINRLITYG 197 (201)
Q Consensus 131 i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~-G~i~~~~~~~~~~~~i~~~i~~ll~~~ 197 (201)
T Consensus 73 ~~~la~~~~v~~------------------tPT~~fld~~gg~~i~~~~Gy~~~~~f~~~L~yv~~~~ 122 (125)
T cd02951 73 EKELARKYRVRF------------------TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred HHHHHHHCCCCC------------------CCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 999999869876------------------77799986999867777259789999999999997186