HHsearch alignment for GI: 254780281 and conserved domain: cd02967
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.67 E-value=4.4e-16 Score=117.92 Aligned_cols=109 Identities=16% Similarity=0.339 Sum_probs=85.3
Q ss_pred CCEEEECCCCCEECHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8707982999796778849-967999960477765446888877655543024433305887651433333057777753
Q gi|254780281|r 37 SDVHLVAQDGTDFSLSSLY-IKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQ 115 (201)
Q Consensus 37 ~~f~L~d~~G~~~~~~~~~-Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~ 115 (201)
T Consensus 1 P~f~l~~ldG~~v~L~~~~~gk~vll~FwatwCP-~Ck~emP~l~~~~~~~---~~~~~vv~~sd----g~~~~~~~f~~ 72 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCP-VCKKLLPVIRSIARAE---ADWLDVVLASD----GEKAEHQRFLK 72 (114)
T ss_pred CCCEEECCCCCEEEECCCCCCCEEEEEEECCCCH-HHHHHHHHHHHHHHHH---CCCEEEEEEEC----CCHHHHHHHHH
T ss_conf 9537453899869805536998499999789886-7877777899999971---78679999978----99799999999
Q ss_pred HCCC-CEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 1368-642245898898988886090886225655677775258742069998589829998
Q gi|254780281|r 116 RFSD-RIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGV 176 (201)
Q Consensus 116 ~~~~-~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~ 176 (201)
T Consensus 73 ~~~l~~~p~~~~~-----e~~~ay~V------------------~~lP~~~liD~~G~I~~k 111 (114)
T cd02967 73 KHGLEAFPYVLSA-----ELGMAYQV------------------SKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred HCCCCCCCEEECH-----HHHHHCCC------------------CCEEEEEEECCCCEEEEC
T ss_conf 7598778798137-----78754445------------------514359999899839955