HHsearch alignment for GI: 254780281 and conserved domain: cd03003
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.21 E-value=0.046 Score=33.29 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=56.5
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf 99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r 55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV 134 (201)
Q Consensus 55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l 134 (201)
T Consensus 17 ~~~~~~V~FyApWC~-hCk~l~P~~~~~a~~~~~---~v~ia~vdc~---~~~-------------------------~l 64 (101)
T cd03003 17 SGEIWFVNFYSPRCS-HCHDLAPTWREFAKEMDG---VIRIGAVNCG---DDR-------------------------ML 64 (101)
T ss_pred CCCEEEEEEECCCCH-HHHHHCHHHHHHHHHHCC---CEEEEEEECC---CCH-------------------------HH
T ss_conf 698299999688588-888646899999998369---6699998525---693-------------------------34
Q ss_pred HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHH
Q ss_conf 886090886225655677775258742069998589829998578988899999
Q gi|254780281|r 135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIE 188 (201)
Q Consensus 135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~ 188 (201)
T Consensus 65 c~~~~V------------------~~yPTl~~f-~~G~~~~~Y~G~Rt~~~l~~ 99 (101)
T cd03003 65 CRSQGV------------------NSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred HCCCEE------------------EECCEEEEE-CCCCEEEEEECCCCHHHHHH
T ss_conf 013456------------------762489998-09970145508899999995