HHsearch alignment for GI: 254780281 and conserved domain: cd03013

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.93  E-value=0.00021  Score=47.43  Aligned_cols=124  Identities=17%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             CCCEEE---ECCCCCEECHHH-HCCCEEEEEEECCC-CCCCCHHH-HHHHHHHHHHHCCCCCCE-EEEEEEECCCCCCHH
Q ss_conf             787079---829997967788-49967999960477-76544688-887765554302443330-588765143333305
Q gi|254780281|r   36 NSDVHL---VAQDGTDFSLSS-LYIKPSIVFFGFTN-CSAVCPTT-LSRLDRLLKQVDPTGTLL-NAYFITVDPKRDTPE  108 (201)
Q Consensus        36 ~~~f~L---~d~~G~~~~~~~-~~Gk~~li~F~~T~-Cpd~Cp~~-l~~l~~~~~~l~~~~~~v-~~v~IsvDP~rDt~e  108 (201)
T Consensus         5 iP~~~l~~~~~~~~~~~~l~d~f~~kkvvl~~vPgAFTp-~Cs~~HlP~~i~~~~~~~~kG--vd~I~~isv----nD~f   77 (155)
T cd03013           5 LPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTP-TCSAQHLPGYVENADELKAKG--VDEVICVSV----NDPF   77 (155)
T ss_pred             CCCCEEEEECCCCCEEEEHHHHHCCCEEEEEECCCCCCC-CCCHHHCCHHHHHHHHHHHCC--CCEEEEEEE----CCHH
T ss_conf             887189976299976887899849981999982466788-653465854777699999769--968999980----9999


Q ss_pred             HHHHHHHHCCC--CEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf             77777531368--6422458988989888860908862256556777752587420699985898299985
Q gi|254780281|r  109 VMKKFVQRFSD--RIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVI  177 (201)
Q Consensus       109 ~l~~y~~~~~~--~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~  177 (201)
T Consensus        78 v~~AW~~~~~~~~~i~~lsD---~~~~f~~~lGl~~d~~~~g~g~-------Rs~R~a~iv~-dg~I~~~~  137 (155)
T cd03013          78 VMKAWGKALGAKDKIRFLAD---GNGEFTKALGLTLDLSAAGGGI-------RSKRYALIVD-DGKVKYLF  137 (155)
T ss_pred             HHHHHHHHHCCCCCEEEEEC---CCHHHHHHHCCEECCCCCCCCC-------CCEEEEEEEE-CCEEEEEE
T ss_conf             99999996098773599546---7479999729806256787800-------2100899999-99899999