HHsearch alignment for GI: 254780281 and conserved domain: cd03013
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.93 E-value=0.00021 Score=47.43 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=80.6
Q ss_pred CCCEEE---ECCCCCEECHHH-HCCCEEEEEEECCC-CCCCCHHH-HHHHHHHHHHHCCCCCCE-EEEEEEECCCCCCHH
Q ss_conf 787079---829997967788-49967999960477-76544688-887765554302443330-588765143333305
Q gi|254780281|r 36 NSDVHL---VAQDGTDFSLSS-LYIKPSIVFFGFTN-CSAVCPTT-LSRLDRLLKQVDPTGTLL-NAYFITVDPKRDTPE 108 (201)
Q Consensus 36 ~~~f~L---~d~~G~~~~~~~-~~Gk~~li~F~~T~-Cpd~Cp~~-l~~l~~~~~~l~~~~~~v-~~v~IsvDP~rDt~e 108 (201)
T Consensus 5 iP~~~l~~~~~~~~~~~~l~d~f~~kkvvl~~vPgAFTp-~Cs~~HlP~~i~~~~~~~~kG--vd~I~~isv----nD~f 77 (155)
T cd03013 5 LPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTP-TCSAQHLPGYVENADELKAKG--VDEVICVSV----NDPF 77 (155)
T ss_pred CCCCEEEEECCCCCEEEEHHHHHCCCEEEEEECCCCCCC-CCCHHHCCHHHHHHHHHHHCC--CCEEEEEEE----CCHH
T ss_conf 887189976299976887899849981999982466788-653465854777699999769--968999980----9999
Q ss_pred HHHHHHHHCCC--CEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf 77777531368--6422458988989888860908862256556777752587420699985898299985
Q gi|254780281|r 109 VMKKFVQRFSD--RIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVI 177 (201)
Q Consensus 109 ~l~~y~~~~~~--~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~ 177 (201)
T Consensus 78 v~~AW~~~~~~~~~i~~lsD---~~~~f~~~lGl~~d~~~~g~g~-------Rs~R~a~iv~-dg~I~~~~ 137 (155)
T cd03013 78 VMKAWGKALGAKDKIRFLAD---GNGEFTKALGLTLDLSAAGGGI-------RSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred HHHHHHHHHCCCCCEEEEEC---CCHHHHHHHCCEECCCCCCCCC-------CCEEEEEEEE-CCEEEEEE
T ss_conf 99999996098773599546---7479999729806256787800-------2100899999-99899999