HHsearch alignment for GI: 254780281 and conserved domain: cd03023

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.91  E-value=0.54  Score=26.86  Aligned_cols=125  Identities=18%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEE---CCCCCCHHHHHHHHHHCCCC--EEC------
Q ss_conf             9967999960477765446888877655543024433305887651---43333305777775313686--422------
Q gi|254780281|r   55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITV---DPKRDTPEVMKKFVQRFSDR--IIG------  123 (201)
Q Consensus        55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~Isv---DP~rDt~e~l~~y~~~~~~~--~~~------  123 (201)
T Consensus         4 ~A~v~ivef~d~~Cp-~C~~~~~~l~~~~~~~~----~v~~~~~~~P~~~~~~~~aa~~~~~~~~~~~~~f~~~~~~l~~   78 (154)
T cd03023           4 NGDVTIVEFFDYNCG-YCKKLAPELEKLLKEDP----DVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMA   78 (154)
T ss_pred             CCCEEEEEEECCCCH-HHHHHHHHHHHHHHHCC----CCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf             999999998899986-37888899999998588----7048855064256463999999999998681259999999998


Q ss_pred             --CCCCHHHHHHHHHHCCEEEEECCCC------------CCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHH
Q ss_conf             --4589889898888609088622565------------56777752587420699985898299985789888999999
Q gi|254780281|r  124 --ISGDPIDVMRVAKNFRIYVNNVLAE------------KSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEK  189 (201)
Q Consensus       124 --ltg~~~~i~~l~~~~~v~~~~~~~~------------~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~  189 (201)
T Consensus        79 ~~~~~~~~~l~~~a~~~gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gI~gTPt~~I---ng~~---~~G~~~~~~l~~~  152 (154)
T cd03023          79 TRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFII---GDTV---IPGAVPADTLKEA  152 (154)
T ss_pred             HCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEE---CCEE---ECCCCCHHHHHHH
T ss_conf             364203899999999839988999988658889999999899999859978998989---9999---4388999999997


Q ss_pred             H
Q ss_conf             9
Q gi|254780281|r  190 I  190 (201)
Q Consensus       190 i  190 (201)
T Consensus       153 i  153 (154)
T cd03023         153 I  153 (154)
T ss_pred             H
T ss_conf             5