HHsearch results for GI: 254780281 and protein with PDBid: 1dby_A
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=98.18 E-value=1.1e-05 Score=53.84 Aligned_cols=90 Identities=17% Similarity=0.312 Sum_probs=65.2
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf 99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r 55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV 134 (201)
Q Consensus 55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l 134 (201)
.+|+++|+|+..||| .|....+.+.++.+++.. ++.++.|.+| +.++ +
T Consensus 18 ~~~pvlv~F~a~wC~-~C~~~~p~~~~l~~~~~~---~~~~~~vd~d---~~~~-------------------------l 65 (107)
T 1dby_A 18 SSVPVLVDFWAPWCG-PCRIIAPVVDEIAGEYKD---KLKCVKLNTD---ESPN-------------------------V 65 (107)
T ss_dssp CSSCEEEEEECTTCH-HHHHHHHHHHHHHHHTTT---TCEEEEEETT---TCHH-------------------------H
T ss_pred CCCCEEEEEECCCCC-CCCCCCHHHHHHHHHHCC---CEEEEEEECC---CCHH-------------------------H
T ss_conf 899299999899887-763437389999886248---6149999887---7641-------------------------4
Q ss_pred HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8860908862256556777752587420699985898299985789888999999999985
Q gi|254780281|r 135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLIT 195 (201)
Q Consensus 135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~i~~ll~ 195 (201)
++.|++.. .+++.++ ++|+.+..+.+..+.+++.+.|++.|+
T Consensus 66 ~~~~~V~~------------------~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~l~ 107 (107)
T 1dby_A 66 ASEYGIRS------------------IPTIMVF-KGGKKCETIIGAVPKATIVQTVEKYLN 107 (107)
T ss_dssp HHHHTCCS------------------SCEEEEE-SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred HHHCCCCC------------------CCEEEEE-ECCEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 75457063------------------7879999-899898898789999999999998609