HHsearch results for GI: 254780281 and protein with PDBid: 1zma_A

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=97.95  E-value=5.8e-05  Score=49.49  Aligned_cols=88  Identities=15%  Similarity=0.240  Sum_probs=60.3

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf             99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r   55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV  134 (201)
Q Consensus        55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l  134 (201)
                      .++..+++||.+||| .|....+.+.++.++.+     ..+.+|.+|-..|                      .+....+
T Consensus        28 ~~~~~~v~f~~~~C~-~C~~~~p~l~~~~~~~~-----~~i~~v~~~~~~~----------------------~~~~~~~   79 (118)
T 1zma_A           28 KKETATFFIGRKTCP-YCRKFAGTLSGVVAETK-----AHIYFINSEEPSQ----------------------LNDLQAF   79 (118)
T ss_dssp             TTCCEEEEEECTTCH-HHHHHHHHHHHHHHHHC-----CCCEEEETTCGGG----------------------HHHHHHH
T ss_pred             CCCCEEEEEECCCCH-HHHHHHHHHHHHHHHHC-----CEEEEEEEECCCC----------------------HHHCCCC
T ss_conf             699699999799796-67611588899999840-----4345666403321----------------------1111244


Q ss_pred             HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHH
Q ss_conf             8860908862256556777752587420699985898299985789888999999
Q gi|254780281|r  135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEK  189 (201)
Q Consensus       135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~  189 (201)
                      ++.|++..                  .++++++ .+|+....+.+..++++|.+-
T Consensus        80 ~~~~~i~~------------------vPtl~~~-k~G~~~~~~~g~~s~~~i~~F  115 (118)
T 1zma_A           80 RSRYGIPT------------------VPGFVHI-TDGQINVRCDSSMSAQEIKDF  115 (118)
T ss_dssp             HHHHTCCS------------------SCEEEEE-ETTEEEEECCTTCCHHHHHHH
T ss_pred             CCCCCCCC------------------CCEEEEE-ECCEEEEEECCCCCHHHHHHH
T ss_conf             52230437------------------8779999-899899988898999999998