HHsearch results for GI: 254780281 and protein with PDBid: 3fkf_A
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.77 E-value=8.8e-18 Score=126.84 Aligned_cols=139 Identities=16% Similarity=0.138 Sum_probs=108.5
Q ss_pred CCCCCCCEEEECCCCCEECHH--HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHH
Q ss_conf 666678707982999796778--849967999960477765446888877655543024433305887651433333057
Q gi|254780281|r 32 NRRFNSDVHLVAQDGTDFSLS--SLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEV 109 (201)
Q Consensus 32 ~~~~~~~f~L~d~~G~~~~~~--~~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~ 109 (201)
.+..+|+|+|.|.+|+.++++ +++||+++++||.+||| .|..+++.+.++++++..+ .++.++.++.|+ +.+.
T Consensus 7 iG~~aPdf~l~~~~G~~~~ls~~~~~gk~vvl~f~a~wC~-~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~~~---~~~~ 81 (148)
T 3fkf_A 7 VGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCD-PQPEANAELKRLNKEYKKN-KNFAMLGISLDI---DREA 81 (148)
T ss_dssp TTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGC-CCHHHHHHHHHHHHHTTTC-TTEEEEEEECCS---CHHH
T ss_pred CCCCCCCEEEECCCCCEEECCHHHHCCCEEEEEEECCCCC-CCCCCCHHHHHHHHHHHHC-CEEEEEEEECCC---CHHH
T ss_conf 9799988488889989885467991999899999999999-8422255489999986116-516899852588---9899
Q ss_pred HHHHHHHCCCCEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHH
Q ss_conf 77775313686422458988989888860908862256556777752587420699985898299985789888999999
Q gi|254780281|r 110 MKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEK 189 (201)
Q Consensus 110 l~~y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~ 189 (201)
.+.+.+....+|.-+.........+++.||+. ..+.+||||++|+++... ...+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~------------------~~P~~~liDk~G~Iv~~~---~~g~~~~~~ 140 (148)
T 3fkf_A 82 WETAIKKDTLSWDQVCDFTGLSSETAKQYAIL------------------TLPTNILLSPTGKILARD---IQGEALTGK 140 (148)
T ss_dssp HHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC------------------SSSEEEEECTTSBEEEES---CCHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECCCHHHHHHHHCCCC------------------CCCEEEEECCCCEEEEEE---CCHHHHHHH
T ss_conf 99999980999868874576167899986988------------------046899998999899997---881785999
Q ss_pred HHHHHHH
Q ss_conf 9999851
Q gi|254780281|r 190 INRLITY 196 (201)
Q Consensus 190 i~~ll~~ 196 (201)
|++||..
T Consensus 141 l~~ll~~ 147 (148)
T 3fkf_A 141 LKELLKT 147 (148)
T ss_dssp HHHHC--
T ss_pred HHHHHCC
T ss_conf 9999746