HHsearch results for GI: 254780281 and protein with PDBid: 3gnj_A

>3gnj_A Thioredoxin domain protein; APC92103, structural genomics, PSI-2, protein structure initiative; 1.99A {Desulfitobacterium hafniense dcb-2}
Probab=98.33  E-value=3.6e-06  Score=56.80  Aligned_cols=91  Identities=20%  Similarity=0.366  Sum_probs=67.2

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf             99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r   55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV  134 (201)
Q Consensus        55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l  134 (201)
                      .|++++|+|+.+||+ .|....+.+.++.+.+..   ++.++.|.+|..   +                         .+
T Consensus        21 ~~~~~lv~F~a~wC~-~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~---~-------------------------~l   68 (111)
T 3gnj_A           21 EGKACLVMFSRKNCH-VCQKVTPVLEELRLNYEE---SFGFYYVDVEEE---K-------------------------TL   68 (111)
T ss_dssp             SCCCEEEEEECSSCH-HHHHHHHHHHHHHHHTTT---TSEEEEEETTTC---H-------------------------HH
T ss_pred             CCCEEEEEEECCCCH-HHHHHHHHHHHHHHHCCC---CEEEEECCCCCC---H-------------------------HH
T ss_conf             899899999989998-999886999999886177---168864355458---8-------------------------89


Q ss_pred             HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             88609088622565567777525874206999858982999857898889999999999851
Q gi|254780281|r  135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLITY  196 (201)
Q Consensus       135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~i~~ll~~  196 (201)
                      ++.|++..                  .++++++ ++|+.+..+.+..+.+++.+-|+++|++
T Consensus        69 ~~~~~I~~------------------~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~~  111 (111)
T 3gnj_A           69 FQRFSLKG------------------VPQILYF-KDGEYKGKMAGDVEDDEVEQMIADVLED  111 (111)
T ss_dssp             HHHTTCCS------------------SCEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHHC
T ss_pred             HHHCCCCC------------------CCEEEEE-ECCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf             99719962------------------6879999-7997999997899999999999998667