HHsearch results for GI: 254780281 and protein with PDBid: 3gnj_A
>3gnj_A Thioredoxin domain protein; APC92103, structural genomics, PSI-2, protein structure initiative; 1.99A {Desulfitobacterium hafniense dcb-2}
Probab=98.33 E-value=3.6e-06 Score=56.80 Aligned_cols=91 Identities=20% Similarity=0.366 Sum_probs=67.2
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf 99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r 55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV 134 (201)
Q Consensus 55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l 134 (201)
.|++++|+|+.+||+ .|....+.+.++.+.+.. ++.++.|.+|.. + .+
T Consensus 21 ~~~~~lv~F~a~wC~-~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~---~-------------------------~l 68 (111)
T 3gnj_A 21 EGKACLVMFSRKNCH-VCQKVTPVLEELRLNYEE---SFGFYYVDVEEE---K-------------------------TL 68 (111)
T ss_dssp SCCCEEEEEECSSCH-HHHHHHHHHHHHHHHTTT---TSEEEEEETTTC---H-------------------------HH
T ss_pred CCCEEEEEEECCCCH-HHHHHHHHHHHHHHHCCC---CEEEEECCCCCC---H-------------------------HH
T ss_conf 899899999989998-999886999999886177---168864355458---8-------------------------89
Q ss_pred HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 88609088622565567777525874206999858982999857898889999999999851
Q gi|254780281|r 135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLITY 196 (201)
Q Consensus 135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~i~~ll~~ 196 (201)
++.|++.. .++++++ ++|+.+..+.+..+.+++.+-|+++|++
T Consensus 69 ~~~~~I~~------------------~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~~ 111 (111)
T 3gnj_A 69 FQRFSLKG------------------VPQILYF-KDGEYKGKMAGDVEDDEVEQMIADVLED 111 (111)
T ss_dssp HHHTTCCS------------------SCEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHCCCCC------------------CCEEEEE-ECCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 99719962------------------6879999-7997999997899999999999998667