RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly
factor protein [Candidatus Liberibacter asiaticus str. psy62]
(201 letters)
>gnl|CDD|162773 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type. A
related model finds a simlar protein in many archaea and
a few bacteria, as well as a microsomal (endoplasmic
reticulum) protein in eukaryotes.
Length = 163
Score = 27.6 bits (62), Expect = 2.5
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 120 RIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
R+IG+ GD ++ ++ ++Y+N ++E Y
Sbjct: 73 RVIGLPGDKVEF----RDGKLYINGKK-----IDEPYL 101
>gnl|CDD|150775 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members
of this family of prokaryotic proteins include various
putative virulence factor effector proteins. Their exact
function is, as yet, unknown.
Length = 852
Score = 26.6 bits (59), Expect = 4.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 65 FTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEV 109
FT +A P RLL + D L N++F D ++ T +
Sbjct: 100 FTRTAAPNPAGFPVELRLLSEADLAKILANSFFNDFDQEKVTYPL 144
>gnl|CDD|149044 pfam07760, DUF1616, Protein of unknown function (DUF1616). This is
a family of sequences from hypothetical archaeal
proteins. The region in question is approximately 330
amino acid residues long.
Length = 278
Score = 26.9 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 2 KALGIILGTILLAVLGSIAYVSFSSK 27
KAL +IL LLA +G++AYV + K
Sbjct: 141 KALSVILIISLLASVGTLAYVILTPK 166
>gnl|CDD|150726 pfam10084, DUF2322, Uncharacterized protein conserved in bacteria
(DUF2322). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 100
Score = 26.1 bits (58), Expect = 5.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 158 VDHTTALLLFDTAGSIVGVIPYK 180
+DH AL L D G +V I K
Sbjct: 11 IDHLAALDLLDAEGEVVHHIENK 33
>gnl|CDD|183179 PRK11528, PRK11528, hypothetical protein; Provisional.
Length = 254
Score = 25.8 bits (57), Expect = 6.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 26 SKFVDGNRRFNSDVHLVAQDGTDFSLSSLYIKPSIVFFGF 65
+ NRR D + + G +F+ + KP FF
Sbjct: 117 GTYGSPNRRNFHDDNTLYGIGYNFTGDGWWFKP---FFAK 153
>gnl|CDD|179671 PRK03906, PRK03906, mannonate dehydratase; Provisional.
Length = 385
Score = 25.9 bits (58), Expect = 7.2
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 18/56 (32%)
Query: 74 TTLSRLDRLLKQVD-P-------TGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRI 121
+T L RLL VD P TG+L P D P +++ F DRI
Sbjct: 249 STEEDLQRLLDAVDSPANGLTLCTGSL------GARPDNDLPAMIR----EFGDRI 294
>gnl|CDD|151065 pfam10508, Proteasom_PSMB, Proteasome non-ATPase 26S subunit. The
26S proteasome, a eukaryotic ATP-dependent, dumb-bell
shaped, protease complex with a molecular mass of approx
20kDa consists of a central 20S proteasome,functioning
as a catalytic machine, and two large V-shaped terminal
modules, having possible regulatory roles,composed of
multiple subunits of 25- 110 kDa attached to the central
portion in opposite orientations. It is responsible for
degradation of abnormal intracellular proteins,
including oxidatively damaged proteins, and may play a
role as a component of a cellular anti-oxidative system.
Expression of catalytic core subunits including PSMB5
and peptidase activities of the proteasome were elevated
following incubation with 3-methylcholanthrene. The 20S
proteasome comprises a cylindrical stack of four rings,
two outer rings formed by seven alpha-subunits
(alpha1-alpha7) and two inner rings of seven
beta-subunits (beta1-beta7). Two outer rings of alpha
subunits maintain structure, while the central beta
rings contain the proteolytic active core subunits beta1
(PSMB6), beta2 (PSMB7), and beta5 (PSMB5). Expression of
PSMB5 can be altered by chemical reactants, such as
3-methylcholanthrene.
Length = 503
Score = 25.4 bits (56), Expect = 8.8
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 13 LAVLGSIAYVSFSSKFVDGNRRFNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFT---NCS 69
L +L +A + ++++ N + +L+ D L ++Y+ + FFG +
Sbjct: 224 LELLTDLAEGNHGAEYLIQNGVVDKLSNLIQGVEEDPDLGAMYLPGIMKFFGNLATMSPP 283
Query: 70 AVC---PTTLSRLDRLLKQVDPT 89
V P L RL +L DPT
Sbjct: 284 QVIQTYPDFLGRLFSMLDSEDPT 306
>gnl|CDD|178360 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 25.5 bits (56), Expect = 9.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 103 KRDTPEVMKKFVQRFSDRIIGISGDPI 129
+R+ PE + K RF D I SG PI
Sbjct: 386 ERNIPEHVNKIAPRFQDGIKAFSGSPI 412
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.140 0.398
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,335,397
Number of extensions: 213651
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 21
Length of query: 201
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,071,361
Effective search space: 455992432
Effective search space used: 455992432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)