RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly
factor protein [Candidatus Liberibacter asiaticus str. psy62]
(201 letters)
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 96.5 bits (239), Expect = 4e-21
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 3/165 (1%)
Query: 31 GNRRFNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTG 90
G HL G +F+ +L K SI++FGF+NC +CP L +L L +
Sbjct: 16 GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY 75
Query: 91 TLLNA-YFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEK 149
+ FIT DP RD+P V+K+++ F I+G++G +V K +R+Y + K
Sbjct: 76 GITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVK 135
Query: 150 SGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
G + Y VDH+ L D G V + D + ++KI +
Sbjct: 136 PG--QDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV 178
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 81.1 bits (199), Expect = 2e-16
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTL-LNAY 96
D L G LS K ++FFGFT C VCPTTL L R +++ P +
Sbjct: 18 DFALEGPQGP-VRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVI 76
Query: 97 FITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKY 156
F++VDP+RD PEV ++ + F +G+SG P V A+ F ++ G +Y
Sbjct: 77 FVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPG---EY 133
Query: 157 FVDHTTALLLFDTAGSIVGVIP--YKDDSDSAIEKINRLI 194
VDHT + G +V + + +D + + L+
Sbjct: 134 LVDHTATTFVVKE-GRLVLLYSPDKAEATDRVVADLQALL 172
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 78.9 bits (193), Expect = 7e-16
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 5/159 (3%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTL--LNA 95
L G + + +++FGFT+C VCP L ++ +++ ++D TL L
Sbjct: 5 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTP 64
Query: 96 YFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEK 155
FI++DP+RDT E + +V+ FS +++G++G +V +VA+ +R+Y + +E
Sbjct: 65 LFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPG---PKDEDED 121
Query: 156 YFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
Y VDHT + L G + I +
Sbjct: 122 YIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 160
>3me7_A Putative uncharacterized protein; electron transfer protein,
structural genomics, PSI-2, protein structure
initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Length = 170
Score = 75.7 bits (185), Expect = 7e-15
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D+ LV G +F L +L KP I+ +T+C A CP L +++ ++ G
Sbjct: 10 DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVIT 69
Query: 98 ITVDPKRDTPEVM---KKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEE 154
T DPK ++ K++ + + D+ ++ +
Sbjct: 70 FTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRF---------MTA 120
Query: 155 KYFVDHTTALLLFDTAGSIVGVIP-YKDDSDSAIEKINRL 193
H +++ I I + + +
Sbjct: 121 GNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA 160
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 69.4 bits (168), Expect = 5e-13
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 36 NSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGT--LL 93
D HL+ G + + +++FGFT+C +CP L +L ++++Q++ +
Sbjct: 6 QGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPV 65
Query: 94 NAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVE 153
FITVDP+RD E M ++VQ F R++G++G V + + ++R+Y N +
Sbjct: 66 QPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAG---PKDED 122
Query: 154 EKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ Y VDH+ A+ L + G ++ + + R +
Sbjct: 123 QDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM 163
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural
genomics, montreal- kingston bacterial structural
genomics initiative; 1.70A {Bacillus subtilis} SCOP:
c.47.1.10 PDB: 1on4_A
Length = 174
Score = 60.0 bits (144), Expect = 4e-10
Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 7/161 (4%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
QDG + SL SL + + F FTNC +CP + + L K++ +
Sbjct: 15 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 74
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+VDP+ D P+ +KKF + + F + + +K E +
Sbjct: 75 FSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKP--EGEDQ 132
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSA-----IEKINRL 193
V H ++ L G ++ +++ ++ + L
Sbjct: 133 VIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTL 173
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 45.4 bits (107), Expect = 1e-05
Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 22/157 (14%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
V DG FS +SL K IV F T C C + + + ++ K +
Sbjct: 16 SFSGVTVDGKPFSSASLKGKAYIVNFFATWCP-PCRSEIPDMVQVQKTWAS-----RGFT 69
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+ +K +++ + P + + F Y+
Sbjct: 70 FVGIAVNEQLPNVKNYMKTQGIIYPVMMATP----ELIRAFNGYI------------DGG 113
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ + D +G++ GVI + +
Sbjct: 114 ITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMAL 150
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 43.6 bits (101), Expect = 3e-05
Identities = 19/157 (12%), Positives = 39/157 (24%), Gaps = 3/157 (1%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
+ + +G D SL ++ C A + G L
Sbjct: 13 EFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQE---MHTRLVGKGLRILA 69
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+ + +++F G+ D ++V + + L +
Sbjct: 70 FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ + L D G V I L+
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.4 bits (102), Expect = 3e-05
Identities = 30/201 (14%), Positives = 52/201 (25%), Gaps = 101/201 (50%)
Query: 11 ILLAVLGSIAYVSFSSKFVDGNRRFNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSA 70
+L L F + +++GN D+H +A + L
Sbjct: 83 VLNLCLTE-----FENCYLEGN-----DIHALA--------AKL---LQEN--------- 112
Query: 71 VCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPID 130
TTL + L+K Y ++ P D
Sbjct: 113 --DTTLVKTKELIK----------NYI----------------------TARIMAKRPFD 138
Query: 131 VMRV--------AKNFRIYV------NNVLAEKSGVEEKYFVDHTTALL--LFDTAGSIV 174
N ++ N + YF + L L+ T +V
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNT---------DDYFEE-----LRDLYQTYHVLV 184
Query: 175 G-VIPYKDDSDSAIEKINRLI 194
G +I + E ++ LI
Sbjct: 185 GDLI------KFSAETLSELI 199
Score = 26.4 bits (58), Expect = 4.9
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 35/89 (39%)
Query: 45 DGTDFSLSSLYIKPSIVFFGFTNCSAVC------------PTT---------LSRLDRLL 83
DG+D + S I IV + T S L L
Sbjct: 464 DGSDLRVLSGSISERIV-------DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 84 KQ-VDPTG--TLLNAYFITVDPKRDTPEV 109
+ D TG ++ T+D D +
Sbjct: 517 HRNKDGTGVRVIVAG---TLDINPD-DDY 541
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A
{Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Length = 170
Score = 43.6 bits (101), Expect = 3e-05
Identities = 21/157 (13%), Positives = 34/157 (21%), Gaps = 3/157 (1%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D + D LS K ++ + C K D +L
Sbjct: 14 DFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPC 73
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+ + D IDV + L
Sbjct: 74 NQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYR---FLKLGKWGIFGDD 130
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ A L + G +V S I +L+
Sbjct: 131 IQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL 167
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
TLPA-like family, PSI-2, protein structure initiative;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 42.0 bits (98), Expect = 9e-05
Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 23/155 (14%)
Query: 38 DVHLVAQDGTDFSLSSLYI--KPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNA 95
L G + SS K ++ F + ++ + R + + +
Sbjct: 13 FFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGM 72
Query: 96 YFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEK 155
I++D + K ++R + + VAK + IY +
Sbjct: 73 LGISLD---VDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIY---------KIPAN 120
Query: 156 YFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKI 190
+ G I+ ++ IE I
Sbjct: 121 ILLSSD---------GKILAKNLRGEELKKKIENI 146
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 42.0 bits (98), Expect = 1e-04
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 35 FNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLN 94
F+ + SLSS K ++FF + + VCPT + + K+ T
Sbjct: 15 FDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINT--E 72
Query: 95 AYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEE 154
+ D + + ++ + I +A+ + VL E SGV
Sbjct: 73 VISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAY-----GVLDEDSGVAY 127
Query: 155 KYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ + + D G + +I +E++ RL+
Sbjct: 128 R-------GVFIIDPNGKLRQIIINDMPIGRNVEEVIRLV 160
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, cytoplasm,
oxidoreductase, peroxidase, redox-active center; 2.02A
{Saccharomyces cerevisiae}
Length = 171
Score = 41.9 bits (97), Expect = 1e-04
Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 3/157 (1%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
+ V + G F L K ++ + C + + +
Sbjct: 14 KLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTPQYKELEALYKRYKDEGFTIIGFPCN 73
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+ + E + +F Q I + N + ++KSG+
Sbjct: 74 QFGHQEPGSDEEIAQFCQLNYGVTFPI---MKKIDVNGGNEDPVYKFLKSQKSGMLGLRG 130
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ L D G + S E I L+
Sbjct: 131 IKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 40.1 bits (93), Expect = 4e-04
Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 23/159 (14%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D+ DG LS K +V T C L ++ + N
Sbjct: 42 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEM-----PALDELQGKLSGPNFEV 96
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+ ++ PE K F++ + +G D +V ++ +
Sbjct: 97 VAINIDTRDPEKPKTFLKEANLTRLGYFNDQK--AKVFQDLKAI--------------GR 140
Query: 158 VDHTTALLLFDTAGSIVGVI--PYKDDSDSAIEKINRLI 194
+L D G + I P + S+ A++ I
Sbjct: 141 ALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 179
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
structural genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis H37RV}
Length = 352
Score = 39.4 bits (91), Expect = 6e-04
Identities = 22/157 (14%), Positives = 40/157 (25%), Gaps = 22/157 (14%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
L L SL K ++ F +C C + + + +G +
Sbjct: 64 TGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCI-NCQRAIPHVVGWYQAYKDSGLAVIGVH 122
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
P + K A N I L Y
Sbjct: 123 TPEYAFEKVPGNVAKG---------------------AANLGISYPIALDNNYATWTNYR 161
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ A L D G++ + + D + + +L+
Sbjct: 162 NRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 198
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
MSE; 2.20A {Corynebacterium glutamicum}
Length = 160
Score = 39.5 bits (91), Expect = 6e-04
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 16/151 (10%)
Query: 45 DGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAY-FITVDPK 103
+ S L K +V C + + ++ + +D + + +
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHD 78
Query: 104 RDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTA 163
TPE +K F+ F + P + +KY ++ T +
Sbjct: 79 VMTPEALKVFIDEFGIKFPVAVDMPREG---------------QRIPSTMKKYRLEGTPS 123
Query: 164 LLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
++L D G I V + D + L+
Sbjct: 124 IILADRKGRIRQVQFGQVDDFVLGLLLGSLL 154
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 1.76A {Thermus thermophilus HB27}
Length = 154
Score = 38.6 bits (89), Expect = 0.001
Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 26/153 (16%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D L+ G + +++ KP+++ F + C VC L R+ ++ +++
Sbjct: 13 DFLLLDPKGQPVTPATVS-KPAVIVFWASWC-TVCKAEFPGLHRVAEETGVPFYVISREP 70
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
RDT EV+ ++++ + I ++ D VA F++
Sbjct: 71 ------RDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG--------------- 109
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKI 190
+ D G +V + + ++ ++ +
Sbjct: 110 ---QPWTFVVDREGKVVALFAGRAGREALLDAL 139
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein structure initiative; HET: MSE; 1.30A
{Bacteroides fragilis nctc 9343}
Length = 142
Score = 37.6 bits (86), Expect = 0.002
Identities = 18/153 (11%), Positives = 38/153 (24%), Gaps = 26/153 (16%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
+ G +L + +++F C A + L
Sbjct: 13 NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLS 72
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
I D + + KK F+ + + + Y
Sbjct: 73 IYPD---EELDEWKKHRNDFAKEWTNGYDKELVIK-------------------NKNLYD 110
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKI 190
+ L L D +++ KD + +E+
Sbjct: 111 LRAIPTLYLLDKNKTVL----LKDATLQKVEQY 139
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione,
oxidoreductase, dithiol-dependant peroxidase; 2.1A
{Trypanosoma brucei}
Length = 190
Score = 37.3 bits (85), Expect = 0.002
Identities = 17/157 (10%), Positives = 39/157 (24%), Gaps = 2/157 (1%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D ++ D ++L P +++ + C L + F
Sbjct: 30 DFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGY--ETATTLYNKYKSQGFTVLAF 87
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
P ++ + + + +N + K G+ +
Sbjct: 88 PCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKA 147
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ L D G V +K+ L+
Sbjct: 148 IKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 37.3 bits (86), Expect = 0.002
Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 21/155 (13%)
Query: 42 VAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGT--LLNAYFIT 99
+ ++GT +LS + I+ C A C + L + +++ G +
Sbjct: 45 LMEEGTQINLSDFENQVVILNAWGQWC-APCRSESDDLQIIHEELQAAGNGDTPGGTVLG 103
Query: 100 VDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVD 159
++ + + ++ + FV I P S + +D
Sbjct: 104 INVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPA---------SVIPTTIVLD 154
Query: 160 HTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
V + S ++ L+
Sbjct: 155 KQ---------HRPAAVFLREVTSKDVLDVALPLV 180
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 35.8 bits (82), Expect = 0.007
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
+ LV D D +L+ K ++ + + VC T++ + ++ ++ T L +
Sbjct: 25 NFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCIS-- 82
Query: 98 ITVDPKRDTPEVMKKFVQRF 117
D P +F
Sbjct: 83 ------ADLPFAQARFCGAE 96
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural
genomics, midwest center for structural genomics,
protein structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 35.2 bits (79), Expect = 0.010
Identities = 20/152 (13%), Positives = 48/152 (31%), Gaps = 13/152 (8%)
Query: 41 LVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITV 100
L DG SL+++ I++F C + K + ++ I
Sbjct: 22 LTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYRE-----ISVIAIDF 76
Query: 101 DPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDH 160
+ P + N+ ++ + + EK+ V
Sbjct: 77 WTAEALKALGLNKPGYPPPD------TPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRS 130
Query: 161 TTALLLFDTAGSIV--GVIPYKDDSDSAIEKI 190
+++ D + +++ G P + +S I+ +
Sbjct: 131 IDYIVIMDKSSNVLYAGTTPSLGELESVIKSV 162
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA)
sandwich, glutaredoxin fold, oxidoreductase; 1.41A
{Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Length = 187
Score = 33.4 bits (75), Expect = 0.033
Identities = 18/157 (11%), Positives = 39/157 (24%), Gaps = 2/157 (1%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D ++ D ++L P +++ + C L + F
Sbjct: 28 DFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGY--ETATTLYNKYKSQGFTVLAF 85
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+ P ++ + + + +N + K G+
Sbjct: 86 PSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKA 145
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ L D G V EK+ L+
Sbjct: 146 IKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLL 182
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase
(GPX4); human GPX4, selenoprotein, thioredoxin-fold,
anti-oxidatve defense system; 1.55A {Homo sapiens}
Length = 183
Score = 33.4 bits (75), Expect = 0.038
Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 2/153 (1%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
+ DG +L IV + C +D + + +L
Sbjct: 29 EFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPC 88
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+ K + + A ++ K +
Sbjct: 89 NQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG--NA 146
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKI 190
+ L D G +V ++ + +
Sbjct: 147 IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 179
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.80A {Chromobacterium
violaceum}
Length = 224
Score = 32.8 bits (74), Expect = 0.057
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 6/76 (7%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
LV D +L S P ++ + L + +
Sbjct: 30 SFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS----WPHLKL 85
Query: 98 ITVDPKRDTPEVMKKF 113
I + D+P + +
Sbjct: 86 IVITV--DSPSSLARA 99
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
protein structure initiative; 2.30A {Streptococcus
pneumoniae} SCOP: c.47.1.10
Length = 163
Score = 32.5 bits (73), Expect = 0.069
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQ 85
D L D + SL+ K ++ + + +C T R + L
Sbjct: 24 DFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAG 71
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreductase; HET: BIH; 1.47A {Xanthomonas campestris
PV} PDB: 3gkk_A 3gkm_A
Length = 163
Score = 32.1 bits (72), Expect = 0.079
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDR 81
D+ L GT +L + +++F + + T +
Sbjct: 17 DLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNA 60
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 31.7 bits (71), Expect = 0.10
Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 31/160 (19%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
G F +SL KP++++F C P+ + + A
Sbjct: 6 QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEA------------PSLSQVAAAN 53
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
V +Q F + + + N+ + +Y
Sbjct: 54 PAVTFVGIATRADVGAMQSFVSK-----------------YNLNFTNLNDADGVIWARYN 96
Query: 158 VDHTTALLLFDTAGSIVGVIPYKD--DSDSAIEKINRLIT 195
V A + + G+ V D ++ L +
Sbjct: 97 VPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS 136
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 31.3 bits (70), Expect = 0.17
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 35 FNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLN 94
FN + +L+S K ++FF + + VCPT + + +K+ G +
Sbjct: 15 FNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEV- 73
Query: 95 AYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGV 152
++D + +R + I + K++ VL E+ GV
Sbjct: 74 -LACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSY-----GVLKEEDGV 125
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 30.9 bits (69), Expect = 0.18
Identities = 11/104 (10%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
+ + + + + SL K +F + C +L + + F
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWC-PPARGFTPQLIEFYDKFHESKN-FEVVF 67
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIY 141
T D + + + + + + +++K+F +
Sbjct: 68 CTWD---EEEDGFAGYFAKMPWLAVPFAQSEAV-QKLSKHFNVE 107
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 30.7 bits (68), Expect = 0.25
Identities = 17/160 (10%), Positives = 37/160 (23%), Gaps = 26/160 (16%)
Query: 36 NSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNA 95
++ + D S+ KP+++ F + C
Sbjct: 18 HTMSTMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSE--------------------- 56
Query: 96 YFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEK 155
+D + S + D A + V + +
Sbjct: 57 LGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQN 116
Query: 156 YFVDHTTALLLFDTAGSIV----GVIPYKDDSDSAIEKIN 191
+ + L G + G I + + + I N
Sbjct: 117 LNISVYPSWALIGKDGDVQRIVKGSIN-EAQALALIRNPN 155
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 30.0 bits (67), Expect = 0.36
Identities = 9/58 (15%), Positives = 20/58 (34%)
Query: 34 RFNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGT 91
+ L+ T +LS + +++F + + T + LL Q +
Sbjct: 29 HSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINA 86
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics; 2.20A {Bacteroides fragilis nctc 9343}
Length = 148
Score = 29.4 bits (65), Expect = 0.54
Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 25/155 (16%)
Query: 38 DVHLVAQDGTDFSLSSLYI--KPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNA 95
L + G S S+ + ++ F + C P + L RL K+
Sbjct: 13 YFSLPNEKGEKLSRSAERFRNRYLLLNFWASWC-DPQPEANAELKRLNKEYKK-NKNFAM 70
Query: 96 YFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEK 155
I++D E + +++ + + AK + I
Sbjct: 71 LGISLD---IDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILT------------- 114
Query: 156 YFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKI 190
+L G I+ + ++++
Sbjct: 115 -----LPTNILLSPTGKILARDIQGEALTGKLKEL 144
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 29.6 bits (66), Expect = 0.55
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 30/111 (27%)
Query: 108 EVMKKFVQRFSDRIIGIS-GDPIDVM---------RVAKNFRIYVNNVLAEKS-----GV 152
+V + ++ + + GDP DV + ++ + E
Sbjct: 805 DVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPA 864
Query: 153 EEKYFVDHTTALLLFDTA----------GSIVGVIPYKDDS-DSAIEKINR 192
E FV +F+ G I+ V+ Y+ ++ + + I R
Sbjct: 865 PEGCFVAPH----IFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIER 911
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacteroides fragilis nctc 9343}
Length = 142
Score = 29.3 bits (64), Expect = 0.56
Identities = 19/152 (12%), Positives = 36/152 (23%), Gaps = 22/152 (14%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D V G + +S L + +++FF +CS + L
Sbjct: 9 DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLA 68
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
I D R+ I D+ + Y
Sbjct: 69 IYPDENREE---WATKAVYMPQGWIVGWNKAGDIR-------------------TRQLYD 106
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEK 189
+ T + L D ++ + +
Sbjct: 107 IRATPTIYLLDGRKRVILKDTSMEQLIDYLAT 138
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 29.4 bits (65), Expect = 0.62
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 41 LVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGT 91
++ + + L+ K + FF + + VCPT + L++ T
Sbjct: 33 VIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINT 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.75
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 33 RRFNSDVHLVAQDGTDFSLSSLYIKPSI 60
++ + + L A D S +L IK ++
Sbjct: 23 KKLQASLKLYADD----SAPALAIKATM 46
Score = 26.9 bits (58), Expect = 3.1
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 179 YKDDSDSAI 187
Y DDS A+
Sbjct: 32 YADDSAPAL 40
>3id5_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, methyltransferase, RNA-binding, rRNA
processing, transferase; HET: SAM; 4.01A {Sulfolobus
solfataricus}
Length = 388
Score = 29.1 bits (65), Expect = 0.78
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 156 YFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRL 193
Y ++H + +D G+IV I D E++
Sbjct: 5 YLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNN 42
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 28.8 bits (64), Expect = 0.83
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 38 DVHLVAQDGTDFSLSSLY-IKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAY 96
+ G I+F + + VC T L R +L +
Sbjct: 13 NFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV--KLI 69
Query: 97 FITVDPKRDTPEVMKKFVQRFSDRIIGISGDPI--DVMR-VAKNFRIYVNNVLAEKSGVE 153
+++D D K S+ PI D R +A +L E
Sbjct: 70 ALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILL-----GMLDPAEKDE 124
Query: 154 EKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
+ V + +F + I Y + ++I R++
Sbjct: 125 KGMPVTA-RVVFVFGPDKKLKLSILYPATTGRNFDEILRVV 164
>3hvv_A Thiol peroxidase, scavengase P20; oxidoreductase, TPX,
peroxiredoxin, antioxidant; 1.75A {Escherichia coli
k-12} PDB: 3hvs_A* 1qxh_A* 3i43_A* 3hvx_A
Length = 167
Score = 29.0 bits (64), Expect = 0.83
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
LVA+D +D +L K ++ + + V ++ + ++L ++D T
Sbjct: 26 TFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVSAASVRKFNQLATEIDNT----VVLC 81
Query: 98 ITVDPKRDTPEVMKKFVQRF 117
I+ D
Sbjct: 82 ISADLPFAQSRFCGAEGLNN 101
>2j2j_A Fiber protein; CAR, KNOB, head, fiber fibre, coxsackievirus,
adenovirus receptor, viral protein; 1.5A {Canine
adenovirus 2} SCOP: b.21.1.1 PDB: 2j1k_C 2w9l_C*
2wbv_A*
Length = 197
Score = 28.7 bits (64), Expect = 0.85
Identities = 5/54 (9%), Positives = 15/54 (27%)
Query: 2 KALGIILGTILLAVLGSIAYVSFSSKFVDGNRRFNSDVHLVAQDGTDFSLSSLY 55
+ ++ G VS + F+ L++ + + +
Sbjct: 46 RDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGE 99
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 28.9 bits (64), Expect = 0.88
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 2/104 (1%)
Query: 41 LVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITV 100
+V + LS K ++FF + + V PT + + G ++V
Sbjct: 19 VVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGC--EVLGVSV 76
Query: 101 DPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNN 144
D + + + + I R+++++ + +
Sbjct: 77 DSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTD 120
>3cyn_A Probable glutathione peroxidase 8; thioredoxin fold, membrane,
oxidoreductase, transmembrane, structural genomics,
structural genomics consortium; 2.00A {Homo sapiens}
Length = 189
Score = 28.8 bits (63), Expect = 0.89
Identities = 15/157 (9%), Positives = 35/157 (22%), Gaps = 7/157 (4%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
+ G SL K S+V ++C L + ++F
Sbjct: 29 AFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNY-------LGLKELHKEFGPSHF 81
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
+ + + + + + + K
Sbjct: 82 SVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKE 141
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
L + G +V ++ + I L+
Sbjct: 142 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 178
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, structural
genomics, PSI-2, protein structure initiative; 1.88A
{Cytophaga hutchinsonii atcc 33406}
Length = 148
Score = 28.8 bits (63), Expect = 0.91
Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 24/157 (15%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
++++ GT L + K + F + + C +L + G Y
Sbjct: 13 NLYMTDTTGTYRYLYDVQAKY-TILFFWDSQCGHCQQETPKLYDWWLKNRAKGI--QVYA 69
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYF 157
++ E KF++ D + + IY
Sbjct: 70 ANIE---RKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY---------------- 110
Query: 158 VDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
T L + D I+ ++ D + + + +
Sbjct: 111 --ATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL 145
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 28.8 bits (64), Expect = 0.94
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 41 LVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITV 100
+ + + + S+ FF + + V PT L + +++ G + Y ++
Sbjct: 15 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGV--DVYSVS- 71
Query: 101 DPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMR-VAKNFRIYVNNVLAEKSGVEEKYFV 158
DT K + D + +NF + + E G+ ++
Sbjct: 72 ---TDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF-----DNMREDEGLADRATF 122
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense
system, oxidoreductase, structural proteomics in
europe, spine; 2.4A {Mycobacterium tuberculosis} SCOP:
c.47.1.10
Length = 195
Score = 28.8 bits (63), Expect = 0.99
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 23 SFSSKFVDGNRRFNSDVHLVAQDGTDFSLSSLYIKPSIVFF 63
++ + G D T + K +VFF
Sbjct: 12 AYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFF 52
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, structural genomics,
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 181
Score = 28.4 bits (62), Expect = 1.1
Identities = 22/159 (13%), Positives = 37/159 (23%), Gaps = 11/159 (6%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D V G SL S+V + C + +L
Sbjct: 31 DFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPC 90
Query: 98 ITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKN--FRIYVNNVLAEKSGVEEK 155
+ + R + + I V + F+ E + K
Sbjct: 91 NQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWK 150
Query: 156 YFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
Y L G +VG + +I L+
Sbjct: 151 Y---------LVAPDGKVVGAWDPTVSVEEVRPQITALV 180
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 28.1 bits (62), Expect = 1.5
Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 30/151 (19%)
Query: 44 QDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPK 103
+ + L KP++V T C + C L RL +Q ++ K
Sbjct: 46 DPARRLTEADLKGKPALVNVWGTWCPS-CRVEHPELTRLAEQ--------GVVIYGINYK 96
Query: 104 RDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTA 163
D +K + + ++ IS + + T
Sbjct: 97 DDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA-------------------PET- 136
Query: 164 LLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
L D G I I D E++ L
Sbjct: 137 -YLIDKQGIIRHKIVGVVDQKVWREQLAPLY 166
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken structural
genomics/proteomics initiative; 1.80A {Thermus
thermophilus HB8} SCOP: c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 27.6 bits (60), Expect = 1.9
Identities = 14/80 (17%), Positives = 22/80 (27%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYF 97
D L G + LS + V F +C V + + + +
Sbjct: 15 DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINAN 74
Query: 98 ITVDPKRDTPEVMKKFVQRF 117
D PE M F +
Sbjct: 75 DYEKYPEDAPEKMAAFAEEH 94
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 27.5 bits (60), Expect = 1.9
Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 6/107 (5%)
Query: 35 FNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLN 94
F +++ D +L SL K +F + C +L K
Sbjct: 7 FPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPP-SRAFTPQLIDFYKAHAEKKNFEV 65
Query: 95 AYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIY 141
++ E K + + + D + + F +
Sbjct: 66 MLISW----DESAEDFKDYYAKMPWLALPFE-DRKGMEFLTTGFDVK 107
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program
for RICE genome research, unknown function; NMR {Oryza
sativa} SCOP: d.52.8.1
Length = 74
Score = 27.0 bits (60), Expect = 2.9
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 41 LVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDP 88
L G IK IV T +AV T + + L++ P
Sbjct: 20 LAGTGGGGLQFLM--IKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIP 65
>3drn_A Peroxiredoxin, bacterioferritin comigratory protein homolog;
oxidoreductase; HET: CIT; 2.15A {Sulfolobus
solfataricus}
Length = 161
Score = 26.9 bits (58), Expect = 3.2
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 38 DVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVC 72
+A +G SLS K +IV + +
Sbjct: 10 LFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPG 44
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.7 bits (58), Expect = 3.4
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 73 PTTLSRLDRLLKQVDPTGTLLNAYFIT------VDPKRDTPEVMKKFVQRFSDRIIGISG 126
P L R DRL+ PTG Y I+ VDP T V+ V+ F GI+
Sbjct: 977 PKAL-RFDRLVAGQIPTGWNAKTYGISDDIISQVDPI--TLFVLVSVVEAFIAS--GIT- 1030
Query: 127 DPIDVMR 133
DP ++ +
Sbjct: 1031 DPYEMYK 1037
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin,
flavoprotein, oxidoreductase; HET: FAD; 1.1A
{Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A*
2vfv_A*
Length = 422
Score = 26.5 bits (57), Expect = 3.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 76 LSRLDRLLKQVDPTGTLLNAYF 97
L+ L +DP G NA+
Sbjct: 395 LADFGALAGALDPAGKFTNAFV 416
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid
biosynthesis, cytoplasm, isomerase, lysine biosynthesis;
2.60A {Mycobacterium tuberculosis}
Length = 290
Score = 26.7 bits (58), Expect = 3.7
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 97 FITVDPKRDTPEVMKKFVQRFSDRIIGISGD 127
F+ + + V DR G+ D
Sbjct: 14 FVLLPDVDAELVLTAARVAALCDRRKGLGAD 44
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A*
Length = 517
Score = 26.6 bits (58), Expect = 3.9
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 171 GSIVGVIPYKDDS-DSAIEKIN 191
G I+ + + D D+ + + N
Sbjct: 422 GPIMIISRFADGDVDAVLSRAN 443
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 26.3 bits (57), Expect = 4.6
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 41 LVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGT 91
+V+ + + SL K ++FF + + VCPT + +
Sbjct: 41 VVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNC 91
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 25.9 bits (56), Expect = 6.7
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 38 DVHLVAQDGTDFSLSSLY-IKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGT 91
+ + G ++F + + V T L R+ +L G
Sbjct: 11 NFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGV 64
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1,
membrane protein, potassium channel, MINK, auxilliary
subunit, micelles, ION transport; NMR {Homo sapiens}
Length = 138
Score = 25.7 bits (56), Expect = 7.3
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 46 GTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDP 88
D L +LY+ + FFGF + S+ +L DP
Sbjct: 46 SGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSK--KLEHSNDP 86
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 25.6 bits (55), Expect = 7.8
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 6/101 (5%)
Query: 41 LVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITV 100
+ + SL SL K ++F + C C L ++ I+
Sbjct: 13 NLLSKSGEVSLGSLVGKTVFLYFSASWC-PPCRGFTPVLAEFYEKHHVAKN-FEVVLISW 70
Query: 101 DPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRVAKNFRIY 141
D + + + + + K F +
Sbjct: 71 D---ENESDFHDYYGKMPWLALPFDQRSTV-SELGKTFGVE 107
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel
beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif,
tetramere, structural genomics; 1.30A {Escherichia coli}
SCOP: c.33.1.3
Length = 199
Score = 25.5 bits (55), Expect = 8.2
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 161 TTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLI 194
TTAL++ D I+ +D + + +L
Sbjct: 19 TTALVVIDLQEGILPFAGGPHTADEVVNRAGKLA 52
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann
like fold, oxidoreductase; HET: FMN; 2.50A
{Staphylococcus epidermidis} SCOP: c.34.1.1 PDB:
1g5q_A*
Length = 181
Score = 25.7 bits (56), Expect = 8.4
Identities = 6/49 (12%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 8 LGTILLAVLGSIAYVSFSSKFVDGNRRFNSDVHLVAQDGTDFSLSSLYI 56
G +L+ SI V + ++ ++ +V+++ + +++ +
Sbjct: 2 YGKLLICATASIN-VININHYIVELKQHFDEVNILFSPSSKNFINTDVL 49
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.140 0.398
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,722,787
Number of extensions: 79095
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 72
Length of query: 201
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 113
Effective length of database: 3,559,758
Effective search space: 402252654
Effective search space used: 402252654
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)