HHsearch alignment for GI: 254780282 and conserved domain: PRK09906

>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional.
Probab=100.00  E-value=0  Score=371.65  Aligned_cols=289  Identities=20%  Similarity=0.216  Sum_probs=243.8

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r    3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI   82 (299)
Q Consensus         3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~   82 (299)
T Consensus         1 M~l~~L~~F~~va~~gs~s~AA~~L~iSQpalS~~I~~LE~~lG~~Lf~R~~r~v~LT~aG~~l~~~a~~il~~~~~~~~   80 (296)
T PRK09906          1 MELRHLRYFVAVAEELNFTKAAEKLHTAQPSLSQQIKDLENCVGVPLLVRDKRKVALTAAGEVFLQDARLILEQAEKAKL   80 (296)
T ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95799999999998099999999988887899999999999859887998899512787089999999999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0012232222223332111000000000135667542000122222222---2222222222223456543211112234
Q gi|254780282|r   83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRK  159 (299)
Q Consensus        83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~  159 (299)
T Consensus        81 ~~~~~~~-~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~v~l~~~~~~~~~~~l~~g~~D~~i~~-~~~~~~~l~~~~  158 (296)
T PRK09906         81 MARKIVQ-EDRQLTIGFVPSAEVNLLPKVLPMFRLRHPDTLIELVSLINTQQEEKLRRGELDVGFMR-HPVYSDEIDYLE  158 (296)
T ss_pred             HHHHHCC-CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEE-CCCCCCCEEEEE
T ss_conf             9986506-77138832122569999999999987408986348997580899999986997679873-688998818998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf             55543321123443211122222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r  160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS  239 (299)
Q Consensus       160 l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~  239 (299)
T Consensus       159 l~~~~~~~~~~~~hpla~~~~i~~~dl~~~~~i~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~v~~G~  236 (296)
T PRK09906        159 LLDEPLVVVLPVDHPLAHEKEITAAQLDGVNFISPDPAQSGS--LAPIIKAWFAQHNSQPNIVQVATNILVTMNLVGMGL  236 (296)
T ss_pred             EECCEEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCCC--HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf             504607999828981005999899997599879636654760--999999999977999746999898999999999498


Q ss_pred             CEEEEEHHHHCC-CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             423311777601-998466177666766008999348778888999999999999850
Q gi|254780282|r  240 GIALLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       240 Gia~lp~~~~~~-~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
T Consensus       237 Gi~~lP~~~~~~~~~~l~~~pl~~~~~~~~~~l~~r~~~-~spa~~~Fi~~l~e~~a~  293 (296)
T PRK09906        237 GCTIIPGYMNNFNTGQVVFRPLAGNVPSIALLMAWKKGE-MKPALRDFIAIVQERLAS  293 (296)
T ss_pred             EEEECHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHHCC
T ss_conf             999845877310689999998899987028999987999-999999999999998544