HHsearch alignment for GI: 254780282 and conserved domain: PRK09906
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional.
Probab=100.00 E-value=0 Score=371.65 Aligned_cols=289 Identities=20% Similarity=0.216 Sum_probs=243.8
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 1 M~l~~L~~F~~va~~gs~s~AA~~L~iSQpalS~~I~~LE~~lG~~Lf~R~~r~v~LT~aG~~l~~~a~~il~~~~~~~~ 80 (296)
T PRK09906 1 MELRHLRYFVAVAEELNFTKAAEKLHTAQPSLSQQIKDLENCVGVPLLVRDKRKVALTAAGEVFLQDARLILEQAEKAKL 80 (296)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95799999999998099999999988887899999999999859887998899512787089999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0012232222223332111000000000135667542000122222222---2222222222223456543211112234
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRK 159 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~ 159 (299)
T Consensus 81 ~~~~~~~-~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~v~l~~~~~~~~~~~l~~g~~D~~i~~-~~~~~~~l~~~~ 158 (296)
T PRK09906 81 MARKIVQ-EDRQLTIGFVPSAEVNLLPKVLPMFRLRHPDTLIELVSLINTQQEEKLRRGELDVGFMR-HPVYSDEIDYLE 158 (296)
T ss_pred HHHHHCC-CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEE-CCCCCCCEEEEE
T ss_conf 9986506-77138832122569999999999987408986348997580899999986997679873-688998818998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf 55543321123443211122222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~ 239 (299)
T Consensus 159 l~~~~~~~~~~~~hpla~~~~i~~~dl~~~~~i~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~v~~G~ 236 (296)
T PRK09906 159 LLDEPLVVVLPVDHPLAHEKEITAAQLDGVNFISPDPAQSGS--LAPIIKAWFAQHNSQPNIVQVATNILVTMNLVGMGL 236 (296)
T ss_pred EECCEEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCCC--HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 504607999828981005999899997599879636654760--999999999977999746999898999999999498
Q ss_pred CEEEEEHHHHCC-CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 423311777601-998466177666766008999348778888999999999999850
Q gi|254780282|r 240 GIALLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 240 Gia~lp~~~~~~-~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
T Consensus 237 Gi~~lP~~~~~~~~~~l~~~pl~~~~~~~~~~l~~r~~~-~spa~~~Fi~~l~e~~a~ 293 (296)
T PRK09906 237 GCTIIPGYMNNFNTGQVVFRPLAGNVPSIALLMAWKKGE-MKPALRDFIAIVQERLAS 293 (296)
T ss_pred EEEECHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHHCC
T ss_conf 999845877310689999998899987028999987999-999999999999998544