HHsearch alignment for GI: 254780282 and conserved domain: PRK10094
>PRK10094 DNA-binding transcriptional activator AllS; Provisional.
Probab=100.00 E-value=0 Score=350.68 Aligned_cols=282 Identities=22% Similarity=0.276 Sum_probs=232.5
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 2 mDl~~Lr~F~aVae~gSfs~AA~~L~isqsavS~~I~~LE~~LGv~Lf~Rt~R~v~LT~aG~~l~~~a~~il~~~~~~~~ 81 (308)
T PRK10094 2 FDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPS 81 (308)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89899999999998199999999978987899999999999969963997799743988999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 001223222222333211100-000000013566754200012222222---22222222222223456-5432111122
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLR-KPIQSSSLIQ 157 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~-~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~-~~~~~~~l~~ 157 (299)
T Consensus 82 ~l~~~~~~~~g~l~i~~~~~~~~~~~l~~ll~~~~~~~P~v~i~i~~~~~~~~~~~l~~~~~dl~i~~~~~~~~~~~~~~ 161 (308)
T PRK10094 82 ELQQVNDGVERQVNIVINNLLYNPQAVASLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFSL 161 (308)
T ss_pred HHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCEEE
T ss_conf 99864158754499995220111667999999999978998899996023347999974997299993688778887699
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf 3455543321123443211-122222211000112356643321100023566520223432121145324200135678
Q gi|254780282|r 158 RKLVTIHMHAYAAPHYLKN-CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 (299)
Q Consensus 158 ~~l~~~~~~~v~~~~~~~~-~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~ 236 (299)
T Consensus 162 ~~l~~~~~~~v~~~~hpla~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~v~ 233 (308)
T PRK10094 162 DPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAW-----RL---PGQKEIIVPDMETKIAAHL 233 (308)
T ss_pred EECCCCHHHHHHCCCCHHHCCCCCCCHHHHHHCCEEEECCCCCCHHHHHEE-----EE---CCCCEEEECCHHHHHHHHH
T ss_conf 993130233210789844528999999999619656730651100020125-----50---7875499898999999999
Q ss_pred HHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 738423311777601---998466177666766008999348778888999999999999
Q gi|254780282|r 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 237 ~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
T Consensus 234 aGlGia~lP~~~v~~~l~~G~LV~~~l~~~~~~~~l~l~wr~~~-~~~~v~~~i~l~~~~ 292 (308)
T PRK10094 234 AGVGIGFLPKSLCQSMIDNQQLVSRVIPTMRPPSPLSLAWRKFG-SGKAVEDIVTLFTQR 292 (308)
T ss_pred HCCEEECCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCC-CCHHHHHHHHHHHHC
T ss_conf 79988923499999998789889996899999808999997799-987999999999871