HHsearch alignment for GI: 254780282 and conserved domain: PRK10094

>PRK10094 DNA-binding transcriptional activator AllS; Provisional.
Probab=100.00  E-value=0  Score=350.68  Aligned_cols=282  Identities=22%  Similarity=0.276  Sum_probs=232.5

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r    3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI   82 (299)
Q Consensus         3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~   82 (299)
T Consensus         2 mDl~~Lr~F~aVae~gSfs~AA~~L~isqsavS~~I~~LE~~LGv~Lf~Rt~R~v~LT~aG~~l~~~a~~il~~~~~~~~   81 (308)
T PRK10094          2 FDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPS   81 (308)
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89899999999998199999999978987899999999999969963997799743988999999999999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf             001223222222333211100-000000013566754200012222222---22222222222223456-5432111122
Q gi|254780282|r   83 ELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLR-KPIQSSSLIQ  157 (299)
Q Consensus        83 ~~~~~~~~~~g~i~I~~~~~~-~~~~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~-~~~~~~~l~~  157 (299)
T Consensus        82 ~l~~~~~~~~g~l~i~~~~~~~~~~~l~~ll~~~~~~~P~v~i~i~~~~~~~~~~~l~~~~~dl~i~~~~~~~~~~~~~~  161 (308)
T PRK10094         82 ELQQVNDGVERQVNIVINNLLYNPQAVASLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFSL  161 (308)
T ss_pred             HHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCEEE
T ss_conf             99864158754499995220111667999999999978998899996023347999974997299993688778887699


Q ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf             3455543321123443211-122222211000112356643321100023566520223432121145324200135678
Q gi|254780282|r  158 RKLVTIHMHAYAAPHYLKN-CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV  236 (299)
Q Consensus       158 ~~l~~~~~~~v~~~~~~~~-~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~  236 (299)
T Consensus       162 ~~l~~~~~~~v~~~~hpla~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~v~  233 (308)
T PRK10094        162 DPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAW-----RL---PGQKEIIVPDMETKIAAHL  233 (308)
T ss_pred             EECCCCHHHHHHCCCCHHHCCCCCCCHHHHHHCCEEEECCCCCCHHHHHEE-----EE---CCCCEEEECCHHHHHHHHH
T ss_conf             993130233210789844528999999999619656730651100020125-----50---7875499898999999999


Q ss_pred             HHCCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             738423311777601---998466177666766008999348778888999999999999
Q gi|254780282|r  237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK  293 (299)
Q Consensus       237 ~g~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~  293 (299)
T Consensus       234 aGlGia~lP~~~v~~~l~~G~LV~~~l~~~~~~~~l~l~wr~~~-~~~~v~~~i~l~~~~  292 (308)
T PRK10094        234 AGVGIGFLPKSLCQSMIDNQQLVSRVIPTMRPPSPLSLAWRKFG-SGKAVEDIVTLFTQR  292 (308)
T ss_pred             HCCEEECCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCC-CCHHHHHHHHHHHHC
T ss_conf             79988923499999998789889996899999808999997799-987999999999871