HHsearch alignment for GI: 254780282 and conserved domain: PRK10216

>PRK10216 DNA-binding transcriptional regulator YidZ; Provisional.
Probab=100.00  E-value=8.5e-33  Score=209.39  Aligned_cols=264  Identities=13%  Similarity=0.052  Sum_probs=194.6

Q ss_pred             HCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             28997899999999999958821797699468500134332222222222101221001223222222333211100000
Q gi|254780282|r   27 LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN  106 (299)
Q Consensus        27 L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~~~~~g~i~I~~~~~~~~~  106 (299)
T Consensus         1 L~lSQpAvS~aL~RLR~~f~DpLFvR~g~gm~PT~~A~~L~~~l~~~L~~~~~~~~~~~~~~p-~~~~F~ia~~d~~~~~   79 (288)
T PRK10216          1 MNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLSPTPLMVSMEQNLADWMQMGNQLLDKPHHQTP-RGLKFELAAESPLMMI   79 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEECCHHHHH
T ss_conf             998778999999999998799448960992315668999999999999999997378878985-5707999963678999


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00001356675420001222222--2222222222222234565432---------111122345554332112344321
Q gi|254780282|r  107 LLQGNLKEFLLLYPDIQIQLILD--NKDIDISMDYADCAIRLRKPIQ---------SSSLIQRKLVTIHMHAYAAPHYLK  175 (299)
Q Consensus       107 ~l~~~l~~f~~~~P~i~i~i~~~--~~~~~l~~~~~Di~i~~~~~~~---------~~~l~~~~l~~~~~~~v~~~~~~~  175 (299)
T Consensus        80 llp~l~~~i~~~AP~v~l~~~~~~~~~~~~L~~g~iDl~i~~~~~~p~~~~~~~~~p~~~~~~~l~~d~~~v~~r~~HP~  159 (288)
T PRK10216         80 MLNALSQQIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFTGRESHPRSRELLSLLPLAIDFEVLFSDLPCVWLRKDHPA  159 (288)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCEEEECCCCCCCCHHHHHCCCCCCCEEEEEEEEEEEEECCCCCC
T ss_conf             99999999997699977996248935599997599768983565686304555127643431799960069998089943


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC--CEEEEEHHHHC---
Q ss_conf             1122222211000112356643321100023566520223432121145324200135678738--42331177760---
Q gi|254780282|r  176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS--GIALLPDYIVK---  250 (299)
Q Consensus       176 ~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~--Gia~lp~~~~~---  250 (299)
T Consensus       160 ~~-~~ltle~y~~~~Hv~v~~~~~~~~~----~d~~L~~~g~~R~i~~~~~~f~~~~~~~~~~~~~li~t~p~~a~~~~~  234 (288)
T PRK10216        160 LH-EEWNLDTFLRYPHISICWEQSDTWA----LDDVLQELGRERTIALSLPGFEQSLFMAAQPDHLLLATAPRYCQHYNQ  234 (288)
T ss_pred             CC-CCCCHHHHHHCCCEEEECCCCCCCH----HHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCEEEECHHHHHHHHH
T ss_conf             46-8989999975898698448888762----799999739865179994988988999956898499810999999987


Q ss_pred             C-CCCEEEECCCCCC-----CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             1-9984661776667-----66008999348778888999999999999850
Q gi|254780282|r  251 D-NPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD  296 (299)
Q Consensus       251 ~-~~~lv~i~~~~~~-----~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~  296 (299)
T Consensus       235 ~~~~~l~~~plP~~~~~~~~~~~~~~l~WH~r~~~dp~h~WLRe~I~~l~a~  286 (288)
T PRK10216        235 LHQLPLVARPLPFDESQQEKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYAS  286 (288)
T ss_pred             HCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             6489957608998874444566338997699887998999999999999985