HHsearch alignment for GI: 254780282 and conserved domain: PRK10216
>PRK10216 DNA-binding transcriptional regulator YidZ; Provisional.
Probab=100.00 E-value=8.5e-33 Score=209.39 Aligned_cols=264 Identities=13% Similarity=0.052 Sum_probs=194.6
Q ss_pred HCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28997899999999999958821797699468500134332222222222101221001223222222333211100000
Q gi|254780282|r 27 LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN 106 (299)
Q Consensus 27 L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~~~~~g~i~I~~~~~~~~~ 106 (299)
T Consensus 1 L~lSQpAvS~aL~RLR~~f~DpLFvR~g~gm~PT~~A~~L~~~l~~~L~~~~~~~~~~~~~~p-~~~~F~ia~~d~~~~~ 79 (288)
T PRK10216 1 MNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLSPTPLMVSMEQNLADWMQMGNQLLDKPHHQTP-RGLKFELAAESPLMMI 79 (288)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEECCHHHHH
T ss_conf 998778999999999998799448960992315668999999999999999997378878985-5707999963678999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00001356675420001222222--2222222222222234565432---------111122345554332112344321
Q gi|254780282|r 107 LLQGNLKEFLLLYPDIQIQLILD--NKDIDISMDYADCAIRLRKPIQ---------SSSLIQRKLVTIHMHAYAAPHYLK 175 (299)
Q Consensus 107 ~l~~~l~~f~~~~P~i~i~i~~~--~~~~~l~~~~~Di~i~~~~~~~---------~~~l~~~~l~~~~~~~v~~~~~~~ 175 (299)
T Consensus 80 llp~l~~~i~~~AP~v~l~~~~~~~~~~~~L~~g~iDl~i~~~~~~p~~~~~~~~~p~~~~~~~l~~d~~~v~~r~~HP~ 159 (288)
T PRK10216 80 MLNALSQQIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFTGRESHPRSRELLSLLPLAIDFEVLFSDLPCVWLRKDHPA 159 (288)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCEEEECCCCCCCCHHHHHCCCCCCCEEEEEEEEEEEEECCCCCC
T ss_conf 99999999997699977996248935599997599768983565686304555127643431799960069998089943
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC--CEEEEEHHHHC---
Q ss_conf 1122222211000112356643321100023566520223432121145324200135678738--42331177760---
Q gi|254780282|r 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS--GIALLPDYIVK--- 250 (299)
Q Consensus 176 ~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~--Gia~lp~~~~~--- 250 (299)
T Consensus 160 ~~-~~ltle~y~~~~Hv~v~~~~~~~~~----~d~~L~~~g~~R~i~~~~~~f~~~~~~~~~~~~~li~t~p~~a~~~~~ 234 (288)
T PRK10216 160 LH-EEWNLDTFLRYPHISICWEQSDTWA----LDDVLQELGRERTIALSLPGFEQSLFMAAQPDHLLLATAPRYCQHYNQ 234 (288)
T ss_pred CC-CCCCHHHHHHCCCEEEECCCCCCCH----HHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCEEEECHHHHHHHHH
T ss_conf 46-8989999975898698448888762----799999739865179994988988999956898499810999999987
Q ss_pred C-CCCEEEECCCCCC-----CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 1-9984661776667-----66008999348778888999999999999850
Q gi|254780282|r 251 D-NPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 251 ~-~~~lv~i~~~~~~-----~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
T Consensus 235 ~~~~~l~~~plP~~~~~~~~~~~~~~l~WH~r~~~dp~h~WLRe~I~~l~a~ 286 (288)
T PRK10216 235 LHQLPLVARPLPFDESQQEKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYAS 286 (288)
T ss_pred HCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6489957608998874444566338997699887998999999999999985