HHsearch alignment for GI: 254780282 and conserved domain: PRK10341
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional.
Probab=100.00 E-value=0 Score=365.67 Aligned_cols=286 Identities=16% Similarity=0.186 Sum_probs=246.4
Q ss_pred CHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 88999999999982768999988289978999999999999588217976994685001343322222222221012210
Q gi|254780282|r 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIE 83 (299)
Q Consensus 4 d~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~ 83 (299)
T Consensus 8 ~~rqL~~F~aVa~~gS~t~AA~~L~iSQpavS~~I~~LE~eLG~~LF~R~~r~v~LT~~G~~l~~~a~~il~~~~~~~~~ 87 (312)
T PRK10341 8 KTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELIVRKNTGVTLTPAGQVLLSRSESITREMKNMVNE 87 (312)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67799999999981999999999888878999999999998498528988998616788999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 01223222222333211100000000013566754200012222222--2-222222222222345-6543211112234
Q gi|254780282|r 84 LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRL-RKPIQSSSLIQRK 159 (299)
Q Consensus 84 ~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~-~~~~~~~~l~~~~ 159 (299)
T Consensus 88 ~~~~~~~~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~D~~i~~~~~~~~~~~~~~~~ 167 (312)
T PRK10341 88 INGMSSEAVVDVSFGFPSLIGFTFMSDMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSNEMKLQDLHVEP 167 (312)
T ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEE
T ss_conf 98722687325743540688999999999999998889779999899999999996698619997436877778749999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf 55543321123443211122222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~ 239 (299)
T Consensus 168 l~~~~~~lv~~~~~p~~~--~~~l~~L~~~~~il~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~s~~~i~~lv~~g~ 241 (312)
T PRK10341 168 LFESEFVLVASKSRTCTG--TTTLESLKNEQWVLPQTNMGYYSELLTTL----QRNGISIENIVKTDSVVTIYNLVLNAD 241 (312)
T ss_pred EECCCEEEEECCCCCCCC--CCCHHHHCCCCEEEECCCCCHHHHHHHHH----HHCCCCCCCEEEECHHHHHHHHHHHCC
T ss_conf 512428999767542348--97989980798686069985899999999----976999881699890999999999799
Q ss_pred CEEEEEHHHHCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 423311777601--99846617766676600899934877888899999999999985
Q gi|254780282|r 240 GIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 (299)
Q Consensus 240 Gia~lp~~~~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r 295 (299)
T Consensus 242 gi~~lP~~~~~~~~~~~L~~lpl~~~~~~~~~~lv~~k~~~ls~a~~~fie~~ke~~s 299 (312)
T PRK10341 242 FLTVIPCDMTSPFGSNQFITIPIKETLPVARYAAVWSKNYRIKKAASVLVELAKEYSS 299 (312)
T ss_pred EEEEEHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 5897269999663189899998999885118999998939889999999999998706