HHsearch alignment for GI: 254780282 and conserved domain: PRK11233

>PRK11233 nitrogen assimilation transcriptional regulator; Provisional.
Probab=100.00  E-value=0  Score=374.35  Aligned_cols=288  Identities=18%  Similarity=0.238  Sum_probs=242.3

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r    3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI   82 (299)
Q Consensus         3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~   82 (299)
T Consensus         1 M~lrqLr~F~aVae~gs~s~AA~~L~isQpavS~~I~~LE~~LG~~Lf~R~~r~v~lT~~G~~l~~~a~~il~~~~~~~~   80 (305)
T PRK11233          1 MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTEAGKILYTHARAILRQCEQAQL   80 (305)
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95799999999998099999999988987899999999999969977998499177988389999999999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0012232222223332111-000000000135667542000122222222---222222222222345654321111223
Q gi|254780282|r   83 ELQESSVKPSGKLRIATTI-DLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQR  158 (299)
Q Consensus        83 ~~~~~~~~~~g~i~I~~~~-~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~  158 (299)
T Consensus        81 ~~~~~~~~~~G~l~ig~~p~~~~~~l~~p~l~~f~~~~P~v~v~l~~~~~~~l~~~l~~g~~Dlai~~~~-~~~~~l~~~  159 (305)
T PRK11233         81 AVHNVGQALSGQVSIGLAPGTAASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINGQLDMAVIYEH-SPVAGVSSQ  159 (305)
T ss_pred             HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEEEECC-CCCCCCEEE
T ss_conf             9997507874049999962155665369999999997894299972388799999987698479998279-898882899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf             45554332112344321112222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r  159 KLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG  238 (299)
Q Consensus       159 ~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g  238 (299)
T Consensus       160 ~l~~~~l~lv~~~~~p---~~~i~l~~l~~~~~i~~~~~~~~r----~~~~~~~~~~~~~~~~~~e~~~~~~i~~~V~~G  232 (305)
T PRK11233        160 ALLKEDLFLVGTQDCP---GQSVDLNAIAQMNLFLPRDYSAVR----LRVDEAFSLRRLTAKVIGEIESIATLTAAIASG  232 (305)
T ss_pred             EEEECCEEEEECCCCC---CCCCCHHHHCCCCEEECCCCCHHH----HHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf             9985358999847788---787899998089989879998499----999999997799984799999699999999979


Q ss_pred             CCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-------HCCC
Q ss_conf             8423311777601---9984661776667660089993487788889999999999998-------5066
Q gi|254780282|r  239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-------RDWK  298 (299)
Q Consensus       239 ~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~-------r~~~  298 (299)
T Consensus       233 ~GiailP~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~r~lspaa~af~d~L~~~~~~p~~e~r~~~  302 (305)
T PRK11233        233 MGVTVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLSARANLSPQAQAVKEILLSLISSPVMEKRQWQ  302 (305)
T ss_pred             CEEEEEHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf             9789871999998753497699925999866599999989098899999999999997747162788661