HHsearch alignment for GI: 254780282 and conserved domain: PRK11233
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional.
Probab=100.00 E-value=0 Score=374.35 Aligned_cols=288 Identities=18% Similarity=0.238 Sum_probs=242.3
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 1 M~lrqLr~F~aVae~gs~s~AA~~L~isQpavS~~I~~LE~~LG~~Lf~R~~r~v~lT~~G~~l~~~a~~il~~~~~~~~ 80 (305)
T PRK11233 1 MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTEAGKILYTHARAILRQCEQAQL 80 (305)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95799999999998099999999988987899999999999969977998499177988389999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0012232222223332111-000000000135667542000122222222---222222222222345654321111223
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTI-DLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQR 158 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~-~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~ 158 (299)
T Consensus 81 ~~~~~~~~~~G~l~ig~~p~~~~~~l~~p~l~~f~~~~P~v~v~l~~~~~~~l~~~l~~g~~Dlai~~~~-~~~~~l~~~ 159 (305)
T PRK11233 81 AVHNVGQALSGQVSIGLAPGTAASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINGQLDMAVIYEH-SPVAGVSSQ 159 (305)
T ss_pred HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEEEECC-CCCCCCEEE
T ss_conf 9997507874049999962155665369999999997894299972388799999987698479998279-898882899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 45554332112344321112222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 159 KLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 159 ~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
T Consensus 160 ~l~~~~l~lv~~~~~p---~~~i~l~~l~~~~~i~~~~~~~~r----~~~~~~~~~~~~~~~~~~e~~~~~~i~~~V~~G 232 (305)
T PRK11233 160 ALLKEDLFLVGTQDCP---GQSVDLNAIAQMNLFLPRDYSAVR----LRVDEAFSLRRLTAKVIGEIESIATLTAAIASG 232 (305)
T ss_pred EEEECCEEEEECCCCC---CCCCCHHHHCCCCEEECCCCCHHH----HHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf 9985358999847788---787899998089989879998499----999999997799984799999699999999979
Q ss_pred CCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-------HCCC
Q ss_conf 8423311777601---9984661776667660089993487788889999999999998-------5066
Q gi|254780282|r 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-------RDWK 298 (299)
Q Consensus 239 ~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~-------r~~~ 298 (299)
T Consensus 233 ~GiailP~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~r~lspaa~af~d~L~~~~~~p~~e~r~~~ 302 (305)
T PRK11233 233 MGVTVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLSARANLSPQAQAVKEILLSLISSPVMEKRQWQ 302 (305)
T ss_pred CEEEEEHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 9789871999998753497699925999866599999989098899999999999997747162788661