HHsearch alignment for GI: 254780282 and conserved domain: PRK11242
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional.
Probab=100.00 E-value=0 Score=391.00 Aligned_cols=286 Identities=23% Similarity=0.335 Sum_probs=252.1
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 1 M~L~~L~~F~~v~~~gs~t~AA~~L~isQ~avS~~i~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~il~~~~~~~~ 80 (292)
T PRK11242 1 MLLRHIRYFLAVAEHGNFTRAAEALHVSQPTLSQQIRQLEESLGVQLFDRSGRTVRLTDAGEVYLRYARRALQDLEAGRR 80 (292)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93489999999998099999999988798999999999999969873898899854773699999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001223222222333211100000000013566754200012222222--2-2222222222223456543211112234
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--K-DIDISMDYADCAIRLRKPIQSSSLIQRK 159 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~-~~~l~~~~~Di~i~~~~~~~~~~l~~~~ 159 (299)
T Consensus 81 ~l~~~~~~~~G~l~ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~-~~~~~l~~~~ 159 (292)
T PRK11242 81 AIHDVADLSRGSLRLAMTPTFTAYLIGPLIDAFHARYPGITLTIREMPQERIEALLADDELDVGIAFAP-VHSPEIEAQP 159 (292)
T ss_pred HHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEEECC-CCCCCCEEEE
T ss_conf 998753577765863024577888738998888864889734899768899999986798557998368-8887725654
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 555433211234432111-2222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 160 LVTIHMHAYAAPHYLKNC-REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 160 l~~~~~~~v~~~~~~~~~-~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
T Consensus 160 l~~~~~~~v~~~~h~la~~~~~is~~~L~~~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~V~~g 235 (292)
T PRK11242 160 LFTETLALVVGRTHPLAARRKPLTLDELADEPLVLLSAEFATREQIDRYF----RRHGITPRVAIEANSISAVLEIVRRG 235 (292)
T ss_pred ECCCEEEEEEECCCHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHH----HHCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf 20450799990898042279999999981899899679985799999999----97699985367538899999999979
Q ss_pred CCEEEEEHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8423311777601998466177666766008999348778888999999999999
Q gi|254780282|r 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 239 ~Gia~lp~~~~~~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
T Consensus 236 ~Gi~ilP~~~~~~~~~l~~i~l~~~~~~r~i~lv~~k~~~~s~~~~~Fid~l~e~ 290 (292)
T PRK11242 236 RLATLLPAAIAREHDDLCAVALDPPLPQRTAALLRRKGAYRSAAARAFIELALER 290 (292)
T ss_pred CEEEEEHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9699702898600899899989899870399999989398899999999999863