HHsearch alignment for GI: 254780282 and conserved domain: PRK11716
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional.
Probab=100.00 E-value=0 Score=311.63 Aligned_cols=261 Identities=21% Similarity=0.239 Sum_probs=213.6
Q ss_pred HCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 28997899999999999958821797699468500134332222222222101221001223222222333211100000
Q gi|254780282|r 27 LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN 106 (299)
Q Consensus 27 L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~~~~~g~i~I~~~~~~~~~ 106 (299)
T Consensus 1 LhvSQpavS~~I~~LE~~lG~~Lf~R~~r~v~LT~~G~~l~~~a~~il~~~~~~~~~~~~~~~~~~G~lri~~~~t~~~~ 80 (269)
T PRK11716 1 MHVSPSTLSRQIQRLEEELGQPLFVRDNRSVTLTEAGEELRPFAQQTLLQWQQLKHTLDQQQPSLSGELSLFCSVTAAYS 80 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHH
T ss_conf 90855899999999999969965998899875878999999999999999999999998405687662699851488777
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 0000135667542000122222222---222222222222345654321111223455543321123443211-122222
Q gi|254780282|r 107 LLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN-CREPLS 182 (299)
Q Consensus 107 ~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~-~~~~~~ 182 (299)
T Consensus 81 ~lp~~l~~f~~~~P~v~~~l~~~~~~~~~~~l~~g~~D~ai~~~p~~~~~~l~~~~l~~~~l~~v~p~~~~~~~~~~~~~ 160 (269)
T PRK11716 81 HLPPILDRFRAEHPLVEIKLTTGDAADAVEKVQSGEADLAIAAKPETLPSSLAFSPIDEIPLVLIAPALPCPVRQQVSQE 160 (269)
T ss_pred HCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCHHHCCCCCC
T ss_conf 54678999999888944898428999999999869955899937878999769999656418999978841543635688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHHHHCCC---CCEEEEC
Q ss_conf 2110001123566433211000235665202234321211453242001356787384233117776019---9846617
Q gi|254780282|r 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIM 259 (299)
Q Consensus 183 ~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~~~~~~---~~lv~i~ 259 (299)
T Consensus 161 ~~dl~~~p~il~~~~~~-r~~~~~~~~~----~~~~p~i~~e~~~~~~i~~~V~~G~GiailP~~~~~~~~~~~~l~~l~ 235 (269)
T PRK11716 161 KPDWSRIPFILPEHGPA-RRRIDLWFRR----HKIKPNIYAQVSGHEAIVSMVALGCGVGILPEVVLDNSPVRDRVQRLE 235 (269)
T ss_pred HHHHHCCCEEECCCCCH-HHHHHHHHHH----CCCCCCEEEEECCHHHHHHHHHHCCEEEEHHHHHHHCCCCCCCEEEEE
T ss_conf 44683386781589827-9999999997----699971799989799999999979941720599983275579889974
Q ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 766676600899934877888899999999999
Q gi|254780282|r 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 (299)
Q Consensus 260 ~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~ 292 (299)
T Consensus 236 ~~~~~~~~~i~l~~~~~r~~sPa~~aF~~~l~~ 268 (269)
T PRK11716 236 VPPELTPFELGVCCQKKRLHEPLIDAFWQLLEN 268 (269)
T ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899887369999997998679999999999965