HHsearch alignment for GI: 254780282 and conserved domain: PRK11716

>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional.
Probab=100.00  E-value=0  Score=311.63  Aligned_cols=261  Identities=21%  Similarity=0.239  Sum_probs=213.6

Q ss_pred             HCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             28997899999999999958821797699468500134332222222222101221001223222222333211100000
Q gi|254780282|r   27 LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN  106 (299)
Q Consensus        27 L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~~~~~g~i~I~~~~~~~~~  106 (299)
T Consensus         1 LhvSQpavS~~I~~LE~~lG~~Lf~R~~r~v~LT~~G~~l~~~a~~il~~~~~~~~~~~~~~~~~~G~lri~~~~t~~~~   80 (269)
T PRK11716          1 MHVSPSTLSRQIQRLEEELGQPLFVRDNRSVTLTEAGEELRPFAQQTLLQWQQLKHTLDQQQPSLSGELSLFCSVTAAYS   80 (269)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHH
T ss_conf             90855899999999999969965998899875878999999999999999999999998405687662699851488777


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             0000135667542000122222222---222222222222345654321111223455543321123443211-122222
Q gi|254780282|r  107 LLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN-CREPLS  182 (299)
Q Consensus       107 ~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~-~~~~~~  182 (299)
T Consensus        81 ~lp~~l~~f~~~~P~v~~~l~~~~~~~~~~~l~~g~~D~ai~~~p~~~~~~l~~~~l~~~~l~~v~p~~~~~~~~~~~~~  160 (269)
T PRK11716         81 HLPPILDRFRAEHPLVEIKLTTGDAADAVEKVQSGEADLAIAAKPETLPSSLAFSPIDEIPLVLIAPALPCPVRQQVSQE  160 (269)
T ss_pred             HCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCHHHCCCCCC
T ss_conf             54678999999888944898428999999999869955899937878999769999656418999978841543635688


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHHHHCCC---CCEEEEC
Q ss_conf             2110001123566433211000235665202234321211453242001356787384233117776019---9846617
Q gi|254780282|r  183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIM  259 (299)
Q Consensus       183 ~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~~~~~~---~~lv~i~  259 (299)
T Consensus       161 ~~dl~~~p~il~~~~~~-r~~~~~~~~~----~~~~p~i~~e~~~~~~i~~~V~~G~GiailP~~~~~~~~~~~~l~~l~  235 (269)
T PRK11716        161 KPDWSRIPFILPEHGPA-RRRIDLWFRR----HKIKPNIYAQVSGHEAIVSMVALGCGVGILPEVVLDNSPVRDRVQRLE  235 (269)
T ss_pred             HHHHHCCCEEECCCCCH-HHHHHHHHHH----CCCCCCEEEEECCHHHHHHHHHHCCEEEEHHHHHHHCCCCCCCEEEEE
T ss_conf             44683386781589827-9999999997----699971799989799999999979941720599983275579889974


Q ss_pred             CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             766676600899934877888899999999999
Q gi|254780282|r  260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL  292 (299)
Q Consensus       260 ~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~  292 (299)
T Consensus       236 ~~~~~~~~~i~l~~~~~r~~sPa~~aF~~~l~~  268 (269)
T PRK11716        236 VPPELTPFELGVCCQKKRLHEPLIDAFWQLLEN  268 (269)
T ss_pred             CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             899887369999997998679999999999965