HHsearch alignment for GI: 254780282 and conserved domain: PRK12681
>PRK12681 cysB transcriptional regulator CysB; Reviewed.
Probab=100.00 E-value=0 Score=368.87 Aligned_cols=286 Identities=23% Similarity=0.250 Sum_probs=250.6
Q ss_pred CCHHHHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCE-EEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 8889999999999827-689999882899789999999999995882179769946-85001343322222222221012
Q gi|254780282|r 3 FDWDKLRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL-TLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 3 md~~~L~~f~~v~~~g-s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
T Consensus 1 M~l~QLryf~~va~~~~n~t~AA~~L~iSQPavS~qIk~LE~eLGv~LF~R~gr~l~~LT~aG~~l~~~a~~iL~~~~~i 80 (324)
T PRK12681 1 MKLQQLRYIVEVVNHNLNVSATAESLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGEEIIRIAREILSKVESI 80 (324)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 94699999999997699999999997897779999999999984996189889988860988999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21001223222222333211100000000013566754200012222222--22-2222222222234565432111122
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--KD-IDISMDYADCAIRLRKPIQSSSLIQ 157 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~~-~~l~~~~~Di~i~~~~~~~~~~l~~ 157 (299)
T Consensus 81 ~~~~~~~~~~~~G~L~Ia~~~t~a~~~LP~~i~~F~~~~P~v~l~l~~~~~~~i~~~l~~g~~DlaI~~e~~~~~~dl~~ 160 (324)
T PRK12681 81 KSVAGEHTWPDKGSLYIATTHTQARYALPPVIKGFIKRYPRVSLHMHQGSPTQIAEAAAKGEADFAIATEALHLYDDLIM 160 (324)
T ss_pred HHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999752887634999853588887725999999987899844653178799999998799872312466666887468
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 34555433211234432111222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 (299)
Q Consensus 158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 237 (299)
T Consensus 161 ~P~~~~~~~vvvp~~HPLa~~~~itl~dL~~~plI~~~~g~~~R----~~id~~f~~~g~~P~iv~e~~~~~~I~~~V~~ 236 (324)
T PRK12681 161 LPCYHWNRSVVVPPDHPLAKKKKLTIEELAQYPLVTYVFGFTGR----SELDTAFNRAGLTPRIVFTATDADVIKTYVRL 236 (324)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHH----HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 64000322245799996557999999998699859614998299----99999999889976079998989999999995
Q ss_pred HCCEEEEEHHHHCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 38423311777601--99846617766676600899934877888899999999999
Q gi|254780282|r 238 GSGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 (299)
Q Consensus 238 g~Gia~lp~~~~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~ 292 (299)
T Consensus 237 GlGV~ilp~mA~~~~~d~~l~~~~~~~~f~~~~t~i~~r~g~~l~~~~~~Fi~~~~p 293 (324)
T PRK12681 237 GLGVGVIASMAVDPVADPDLVAIDASHLFAHSTTKIGFRRGTFLRSYMYDFIERFAP 293 (324)
T ss_pred CCEEEECHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 991397035551965578817843655677764799997997157999999998612