HHsearch alignment for GI: 254780282 and conserved domain: TIGR03418
>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=100.00 E-value=0 Score=396.52 Aligned_cols=287 Identities=25% Similarity=0.391 Sum_probs=251.3
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
T Consensus 1 m~l~~L~~F~~Va~~gS~t~AA~~L~~sqsavS~~I~~LE~~lG~~Lf~R~~r~~~lT~aG~~l~~~a~~~l~~~~~~~~ 80 (291)
T TIGR03418 1 LSLQALRVFESAARLASFTAAARELGSTQPAVSQQVKRLEEELGTPLFERGHRGIELTEDGQRLFEAVRAGLDTIDLATA 80 (291)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97799999999998199999999988788899999999999969965897799546868899999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00122322222233321110000000001356675420001222222222222222222223456543211112234555
Q gi|254780282|r 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT 162 (299)
Q Consensus 83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~ 162 (299)
T Consensus 81 ~l~~~--~~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~v~l~~~~~~~~~~~~~~Dlai~~~~~-~~~~~~~~~l~~ 157 (291)
T TIGR03418 81 QLRAR--REHETLTLATDFAFATYWLMPRLHRFKRAMPDVDVSLVTSQDSLDPQRDDIDVAILFGDG-RWPGGEAHRLFS 157 (291)
T ss_pred HHHCC--CCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCCCEEEEECCC-CCCCCEEEECCC
T ss_conf 98554--667824885143887777568767899868980799995474045432787389996478-898863899105
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCE
Q ss_conf 43321123443211122222211000112356643321100023-56652022343212114532420013567873842
Q gi|254780282|r 163 IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 (299)
Q Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gi 241 (299)
T Consensus 158 ~~~~~v~sp~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~G~Gi 236 (291)
T TIGR03418 158 EEVTPVCSPALLAARATPLSAADLLRLPLLHLEPTQPARWFDWAGWFDAHGL-ERPPAPGGLTFNNYTLVIQAAIGGQGV 236 (291)
T ss_pred CEEEEEECHHHHHHCCCCCCHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCC-CCCCCCCEEEECCHHHHHHHHHHCCCE
T ss_conf 6199998859998669999999993898799538988630123556651583-015778628999899999999978987
Q ss_pred EEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 3311777601---998466177666766008999348778888999999999999
Q gi|254780282|r 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 242 a~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
T Consensus 237 a~lp~~~v~~~l~~G~Lv~ll~~~~~~~~~~~lv~~~~~~~~~~~r~Fid~l~~e 291 (291)
T TIGR03418 237 ALGWAPLVDELLEAGQLVRLIDEPVVTERGYYLVRPPRKRRGPAVRRFRDWLLDE 291 (291)
T ss_pred EEEEHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 9611999999987899799798556888639999839987899999999997339