HHsearch alignment for GI: 254780282 and conserved domain: TIGR03418

>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=100.00  E-value=0  Score=396.52  Aligned_cols=287  Identities=25%  Similarity=0.391  Sum_probs=251.3

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r    3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI   82 (299)
Q Consensus         3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~   82 (299)
T Consensus         1 m~l~~L~~F~~Va~~gS~t~AA~~L~~sqsavS~~I~~LE~~lG~~Lf~R~~r~~~lT~aG~~l~~~a~~~l~~~~~~~~   80 (291)
T TIGR03418         1 LSLQALRVFESAARLASFTAAARELGSTQPAVSQQVKRLEEELGTPLFERGHRGIELTEDGQRLFEAVRAGLDTIDLATA   80 (291)
T ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97799999999998199999999988788899999999999969965897799546868899999999999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00122322222233321110000000001356675420001222222222222222222223456543211112234555
Q gi|254780282|r   83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT  162 (299)
Q Consensus        83 ~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l~~  162 (299)
T Consensus        81 ~l~~~--~~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~v~l~~~~~~~~~~~~~~Dlai~~~~~-~~~~~~~~~l~~  157 (291)
T TIGR03418        81 QLRAR--REHETLTLATDFAFATYWLMPRLHRFKRAMPDVDVSLVTSQDSLDPQRDDIDVAILFGDG-RWPGGEAHRLFS  157 (291)
T ss_pred             HHHCC--CCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCCCEEEEECCC-CCCCCEEEECCC
T ss_conf             98554--667824885143887777568767899868980799995474045432787389996478-898863899105


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCE
Q ss_conf             43321123443211122222211000112356643321100023-56652022343212114532420013567873842
Q gi|254780282|r  163 IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI  241 (299)
Q Consensus       163 ~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gi  241 (299)
T Consensus       158 ~~~~~v~sp~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~G~Gi  236 (291)
T TIGR03418       158 EEVTPVCSPALLAARATPLSAADLLRLPLLHLEPTQPARWFDWAGWFDAHGL-ERPPAPGGLTFNNYTLVIQAAIGGQGV  236 (291)
T ss_pred             CEEEEEECHHHHHHCCCCCCHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCC-CCCCCCCEEEECCHHHHHHHHHHCCCE
T ss_conf             6199998859998669999999993898799538988630123556651583-015778628999899999999978987


Q ss_pred             EEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             3311777601---998466177666766008999348778888999999999999
Q gi|254780282|r  242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK  293 (299)
Q Consensus       242 a~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~  293 (299)
T Consensus       237 a~lp~~~v~~~l~~G~Lv~ll~~~~~~~~~~~lv~~~~~~~~~~~r~Fid~l~~e  291 (291)
T TIGR03418       237 ALGWAPLVDELLEAGQLVRLIDEPVVTERGYYLVRPPRKRRGPAVRRFRDWLLDE  291 (291)
T ss_pred             EEEEHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf             9611999999987899799798556888639999839987899999999997339