HHsearch alignment for GI: 254780282 and conserved domain: pfam01047
>pfam01047 MarR MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.
Probab=94.83 E-value=0.087 Score=29.71 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHCC--HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88899999999998276--8999988289978999999999999
Q gi|254780282|r 3 FDWDKLRVFYVVARSGS--FTHAAEQLHLSQSSISRQISGLETE 44 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs--~s~AA~~L~itq~avS~~i~~LE~~ 44 (299)
T Consensus 1 lT~~Q~~vL~~l~~~~~~s~~~la~~~~~~~~~vs~~i~~Le~~ 44 (59)
T pfam01047 1 LTLTQFHILRILYEHGPLTVSELAEKLGVDRSTVTRVLDRLEKK 44 (59)
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 98999999999994699299999999885865499999999889