HHsearch alignment for GI: 254780282 and conserved domain: pfam08279

>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.

Probab=93.02  E-value=0.31  Score=26.48  Aligned_cols=49  Identities=29%  Similarity=0.447  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHC---CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCE
Q ss_conf             99999999827---689999882899789999999999995882179769946
Q gi|254780282|r    8 LRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL   57 (299)
Q Consensus         8 L~~f~~v~~~g---s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~   57 (299)
T Consensus         3 ~~il~~L~~~~~~vt~~~La~~l~VSr~TV~rdi~~L~-~~G~~I~s~~g~GY   54 (55)
T pfam08279         3 LQILELLLQAREPISGQELAEKLGVSRRTIRRDIKALE-ALGVPIESEPGRGY   54 (55)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCCCEEECCCCCC
T ss_conf             99999999769991899999996988999999999999-88997884689999