HHsearch alignment for GI: 254780282 and conserved domain: pfam09048

>pfam09048 Cro Cro. Members of this family are involved in the repression of transcription by binding as a homodimer to palindromic DNA operator sites in phage lambda: they repress genes expressed in early phage development and are necessary for the late stage of lytic growth. These proteins have a secondary structure consisting of three alpha-helices and three beta-sheets, and dimerize through interactions between the two antiparallel beta-strands.
Probab=96.31  E-value=0.0062  Score=36.35  Aligned_cols=45  Identities=31%  Similarity=0.425  Sum_probs=35.3

Q ss_pred             HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEE--ECCCCCCCCCCC
Q ss_conf             99827689999882899789999999999995882179769946850--013433222222
Q gi|254780282|r   14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT--EQGSKLHRVTSE   72 (299)
Q Consensus        14 v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT--~~G~~l~~~a~~   72 (299)
T Consensus         9 v~~~G-Q~kaA~~lGV~Q~AISKAlra-------------gR~I~v~~~~DG~v~AeEvrp   55 (58)
T pfam09048         9 VEEHG-QAKAAKDLGVNQSAISKALRA-------------GRNIEVTVYEDGSVEAEEVRP   55 (58)
T ss_pred             HHHHC-HHHHHHHCCCCHHHHHHHHHC-------------CCEEEEEECCCCCEEEEEEEC
T ss_conf             99976-598999829758999999964-------------881799986899688888615