HHsearch alignment for GI: 254780282 and conserved domain: pfam09048
>pfam09048 Cro Cro. Members of this family are involved in the repression of transcription by binding as a homodimer to palindromic DNA operator sites in phage lambda: they repress genes expressed in early phage development and are necessary for the late stage of lytic growth. These proteins have a secondary structure consisting of three alpha-helices and three beta-sheets, and dimerize through interactions between the two antiparallel beta-strands.
Probab=96.31 E-value=0.0062 Score=36.35 Aligned_cols=45 Identities=31% Similarity=0.425 Sum_probs=35.3
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEE--ECCCCCCCCCCC
Q ss_conf 99827689999882899789999999999995882179769946850--013433222222
Q gi|254780282|r 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT--EQGSKLHRVTSE 72 (299)
Q Consensus 14 v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT--~~G~~l~~~a~~ 72 (299)
T Consensus 9 v~~~G-Q~kaA~~lGV~Q~AISKAlra-------------gR~I~v~~~~DG~v~AeEvrp 55 (58)
T pfam09048 9 VEEHG-QAKAAKDLGVNQSAISKALRA-------------GRNIEVTVYEDGSVEAEEVRP 55 (58)
T ss_pred HHHHC-HHHHHHHCCCCHHHHHHHHHC-------------CCEEEEEECCCCCEEEEEEEC
T ss_conf 99976-598999829758999999964-------------881799986899688888615