HHsearch alignment for GI: 254780282 and conserved domain: smart00062
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=95.18 E-value=0.22 Score=27.33 Aligned_cols=170 Identities=9% Similarity=0.011 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCC-CC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000013566754200012222222---2222222222222345-65-4321111-2234555433211234432111222
Q gi|254780282|r 107 LLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRL-RK-PIQSSSL-IQRKLVTIHMHAYAAPHYLKNCREP 180 (299)
Q Consensus 107 ~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~-~~-~~~~~~l-~~~~l~~~~~~~v~~~~~~~~~~~~ 180 (299)
T Consensus 25 ~~~Dil~~~~~~l-g~~i~~~~~~~~r~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-----~~ 98 (219)
T smart00062 25 FDVDLAKAIAKEL-GLKVEFVEVSFDNLLTALKSGKIDVVAAGMTITPERAKQVDFSDPYYKSGQVILVRKDS-----PI 98 (219)
T ss_pred EHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCEECCCEEEEEECCC-----CC
T ss_conf 2999999999997-99679998478999999975897705311357867750022245500244479996589-----97
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCC-EEEEEHHHH----CCCCC-
Q ss_conf 222110001123566433211000235665202234321211453242001356787384-233117776----01998-
Q gi|254780282|r 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG-IALLPDYIV----KDNPN- 254 (299)
Q Consensus 181 ~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~G-ia~lp~~~~----~~~~~- 254 (299)
T Consensus 99 ~~~~dL~g~~i~~~~-g~~----~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~~~ 168 (219)
T smart00062 99 KSLEDLKGKKVAVVA-GTT----GEELLKKLYP-----EAKIVSYDSQAEALAALKAGRADAAVADAPALAALVKQHGLP 168 (219)
T ss_pred CCHHHHCCCEEEEEC-CCH----HHHHHHHHCC-----CCEEEEECCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
T ss_conf 997996797799957-987----9999997287-----852898599999999998398799997799999999848999
Q ss_pred EEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 46617766676600899934877888899999999999985
Q gi|254780282|r 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 (299)
Q Consensus 255 lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r 295 (299)
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~n~~l~~l~ 206 (219)
T smart00062 169 ELKIVGDPLDTPEGYAFAVRKG---DPELLDKINKALKELK 206 (219)
T ss_pred CEEEECCCCCCCCEEEEEEECC---CHHHHHHHHHHHHHHH
T ss_conf 8378346777764199999599---9999999999999999