HHsearch results for GI: 254780282 and protein with PDBid: 1al3_A
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=100.00 E-value=0 Score=356.48 Aligned_cols=287 Identities=22% Similarity=0.263 Sum_probs=249.0
Q ss_pred CCHHHHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCE-EEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 8889999999999827-689999882899789999999999995882179769946-85001343322222222221012
Q gi|254780282|r 3 FDWDKLRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL-TLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 3 md~~~L~~f~~v~~~g-s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
||+++|+||++|+++| |||+||++|++||||||++|++||++||++||+|++||+ .||++|+.|+++++.+++.++++
T Consensus 1 M~l~~L~~F~~v~~~~~S~s~AA~~L~isQ~avS~~I~~LE~~lg~~Lf~R~~r~~~~lT~~G~~l~~~a~~il~~~~~~ 80 (324)
T 1al3_A 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGQEIIRIAREVLSKVDAI 80 (324)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 94799999999998599899999998888889999999999996997499879988667886985201132233222333
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 210012232222223332111000000000135667542000122222222---22222222222234565432111122
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQ 157 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~ 157 (299)
.+.+........|.++||++++++..++++.+.+|.++||+++|++...+. ...+..|++|+++.......+.++..
T Consensus 81 ~~~~~~~~~~~~g~l~i~~~~~~~~~~l~~~l~~~~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~~~~~ 160 (324)
T 1al3_A 81 KSVAGEHTWPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVM 160 (324)
T ss_dssp -------CCCCEEEEEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCTTSCEEE
T ss_pred CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCEEE
T ss_conf 33222323456675067533687887899999999975898289999798799986674798258863067677665058
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf 34555433211234432111222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 (299)
Q Consensus 158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~ 237 (299)
.+++.++++++++++|+...+.+++++||.++|||.+....+.......++... +......+++++.++++++|.+
T Consensus 161 ~~l~~~~~~~~~~~~~~l~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~ 236 (324)
T 1al3_A 161 LPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRA----GLTPRIVFTATDADVIKTYVRL 236 (324)
T ss_dssp EEEEEECEEEEECTTSTTTTTSCCCHHHHHTSEEEEECTTSTTHHHHHHHHHHH----TCCCEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEEEEEEECCCCHHCCCCCCCHHHHHHCCCEECCCCCCHHHHHHHHHHHC----CCCCCEEEEECCHHHHHHHHHH
T ss_conf 986530057997465221039999999996287720489984899999999976----9987569999999999999993
Q ss_pred HCCEEEEEHHHHCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 38423311777601--998466177666766008999348778888999999999999
Q gi|254780282|r 238 GSGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 238 g~Gia~lp~~~~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
|.|++++|.+.+.+ +++++.+......+.+++|++||+++..++.++.|++++.++
T Consensus 237 g~gi~~lp~~~~~~~~~~~lv~~~~~~~~~~~~~~l~~r~~~~~s~~~~~fi~~~~~~ 294 (324)
T 1al3_A 237 GLGVGVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPH 294 (324)
T ss_dssp TSCEEEEEGGGCCTTTCTTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTT
T ss_pred CCEEEECHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9979972598973874899899958788865579999969685699999999999987