HHsearch results for GI: 254780282 and protein with PDBid: 1al3_A

>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=100.00  E-value=0  Score=356.48  Aligned_cols=287  Identities=22%  Similarity=0.263  Sum_probs=249.0

Q ss_pred             CCHHHHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCE-EEEECCCCCCCCCCCCCCCCCHH
Q ss_conf             8889999999999827-689999882899789999999999995882179769946-85001343322222222221012
Q gi|254780282|r    3 FDWDKLRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL-TLTEQGSKLHRVTSEVYHKLETT   80 (299)
Q Consensus         3 md~~~L~~f~~v~~~g-s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~-~lT~~G~~l~~~a~~~l~~~~~~   80 (299)
                      ||+++|+||++|+++| |||+||++|++||||||++|++||++||++||+|++||+ .||++|+.|+++++.+++.++++
T Consensus         1 M~l~~L~~F~~v~~~~~S~s~AA~~L~isQ~avS~~I~~LE~~lg~~Lf~R~~r~~~~lT~~G~~l~~~a~~il~~~~~~   80 (324)
T 1al3_A            1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGQEIIRIAREVLSKVDAI   80 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf             94799999999998599899999998888889999999999996997499879988667886985201132233222333


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             210012232222223332111000000000135667542000122222222---22222222222234565432111122
Q gi|254780282|r   81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQ  157 (299)
Q Consensus        81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~  157 (299)
                      .+.+........|.++||++++++..++++.+.+|.++||+++|++...+.   ...+..|++|+++.......+.++..
T Consensus        81 ~~~~~~~~~~~~g~l~i~~~~~~~~~~l~~~l~~~~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~~~~~  160 (324)
T 1al3_A           81 KSVAGEHTWPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVM  160 (324)
T ss_dssp             -------CCCCEEEEEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCTTSCEEE
T ss_pred             CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCEEE
T ss_conf             33222323456675067533687887899999999975898289999798799986674798258863067677665058


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHH
Q ss_conf             34555433211234432111222222110001123566433211000235665202234321211453242001356787
Q gi|254780282|r  158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL  237 (299)
Q Consensus       158 ~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~  237 (299)
                      .+++.++++++++++|+...+.+++++||.++|||.+....+.......++...    +......+++++.++++++|.+
T Consensus       161 ~~l~~~~~~~~~~~~~~l~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~  236 (324)
T 1al3_A          161 LPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRA----GLTPRIVFTATDADVIKTYVRL  236 (324)
T ss_dssp             EEEEEECEEEEECTTSTTTTTSCCCHHHHHTSEEEEECTTSTTHHHHHHHHHHH----TCCCEEEEEESSHHHHHHHHHH
T ss_pred             EEEEEEEEEEEECCCCHHCCCCCCCHHHHHHCCCEECCCCCCHHHHHHHHHHHC----CCCCCEEEEECCHHHHHHHHHH
T ss_conf             986530057997465221039999999996287720489984899999999976----9987569999999999999993


Q ss_pred             HCCEEEEEHHHHCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             38423311777601--998466177666766008999348778888999999999999
Q gi|254780282|r  238 GSGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK  293 (299)
Q Consensus       238 g~Gia~lp~~~~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~  293 (299)
                      |.|++++|.+.+.+  +++++.+......+.+++|++||+++..++.++.|++++.++
T Consensus       237 g~gi~~lp~~~~~~~~~~~lv~~~~~~~~~~~~~~l~~r~~~~~s~~~~~fi~~~~~~  294 (324)
T 1al3_A          237 GLGVGVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPH  294 (324)
T ss_dssp             TSCEEEEEGGGCCTTTCTTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTT
T ss_pred             CCEEEECHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9979972598973874899899958788865579999969685699999999999987