HHsearch results for GI: 254780282 and protein with PDBid: 1uth_A
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=100.00 E-value=0 Score=327.45 Aligned_cols=288 Identities=17% Similarity=0.147 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999998276899998828997899999999999958821797699468500134332222222222101221
Q gi|254780282|r 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 (299)
Q Consensus 3 md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~ 82 (299)
||+++|++|++|+++|||++||++|++||||||++|++||++||++||+|+++|++||++|+.++++++.++...++...
T Consensus 14 ~dl~~L~~F~~v~e~gs~t~AA~~L~isq~avS~~I~~LE~~lg~~LF~R~~~~~~lT~~g~~l~~~~~~~~~~~~~~~~ 93 (315)
T 1uth_A 14 IDLNLLVVFNQLLLDRSVSTAGEKLGLTQPAVSNSLKRLRTALNDDLFLRTSKGMEPTPYALHLAEPVIYALNTLQTALT 93 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998099999999988798999999999999959958999899744238999989999999986402267
Q ss_pred HCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0012232-222223332111000000000135667542000122222222---222222222222345654321111223
Q gi|254780282|r 83 ELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQR 158 (299)
Q Consensus 83 ~~~~~~~-~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~---~~~l~~~~~Di~i~~~~~~~~~~l~~~ 158 (299)
....... ...|.+++++++++...++++.+..|.+.||++++++...+. ...+..|++|++|.... ..++++...
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~p~~~i~i~~~~~~~~~~~l~~g~~D~~i~~~~-~~~~~l~~~ 172 (315)
T 1uth_A 94 TRNSFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLP-ELQTGFFQR 172 (315)
T ss_dssp CCSSCCTTTCCCEEEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCT-TCCTTEEEE
T ss_pred HHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCEEEEEECC-CCCCCCEEE
T ss_conf 7775420455423898400577898899999998874887632899704488999986799529998079-999982899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 45554332112344321112222221100011235664332110002356652022343212114532420013567873
Q gi|254780282|r 159 KLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 (299)
Q Consensus 159 ~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g 238 (299)
+|++++++++++++|+...+. ...+++.+++++.+............++ ...+......++++++.+++++|.+|
T Consensus 173 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~g 247 (315)
T 1uth_A 173 RLFRHRYVCMFRKDHPSAKSP-MSLKQFSELEHVGVVALNTGHGEVDGLL----ERAGIKRRMRLVVPHFIAIGPILHST 247 (315)
T ss_dssp EEEEECEEEEEETTCSSCCSS-CCHHHHHHSEEEEECCTTSGGGGHHHHH----HHTTCCCEEEEEESSSTTHHHHHHTS
T ss_pred EEEEEEEEEEECCCCHHHCCC-CCHHHHHHCCEEEEECCCCCHHHHHHHH----HHCCCCCCEEEECCCHHHHHHHHHCC
T ss_conf 976110699962875543289-8836774187179855986158999999----97699873379528578899999809
Q ss_pred CCEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8423311777601---998466177666766008999348778888999999999999850
Q gi|254780282|r 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 (299)
Q Consensus 239 ~Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~ 296 (299)
.|++++|.+++.. .++++.+..+.+.+.+++|++|+++...+|+.++|.+.+.+-++|
T Consensus 248 ~gi~~lP~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~lr~~i~~~~~e 308 (315)
T 1uth_A 248 DLIATVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELFSE 308 (315)
T ss_dssp SCBEEEEHHHHHHHTTTTTEEEEECSSCCCCEEEEEEEEGGGTTCHHHHHHHHHHHHHHCC
T ss_pred CEEEECCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999801999997744699799778988896689999868988998999999999999985