HHsearch results for GI: 254780282 and protein with PDBid: 2nyx_A
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=97.26 E-value=0.00023 Score=43.41 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHCCH--HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 8888999999999982768--9999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSGSF--THAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~gs~--s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
++++.+++++..+.+.|.. +.-|+.+++++|+||+.|++||+. |.---.++. ..+.+|+.|+.++..+....
T Consensus 42 ~LT~~q~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~-GlV~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~ 120 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGA-ELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHR 120 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 989999999999996799699999999896988999999998164-4278653377885478877887999999999999
Q ss_pred CCC
Q ss_conf 221
Q gi|254780282|r 75 HKL 77 (299)
Q Consensus 75 ~~~ 77 (299)
...
T Consensus 121 ~~~ 123 (168)
T 2nyx_A 121 RTE 123 (168)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999