HHsearch results for GI: 254780282 and protein with PDBid: 2q88_A
>2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=92.89 E-value=0.4 Score=24.58 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHCCCCCCC-C---CCCCCCCCCCCCCCCCC-CC-CCCCCCC
Q ss_conf 2222333211100000----------000013566754200012222-2---22222222222222234-56-5432111
Q gi|254780282|r 91 PSGKLRIATTIDLGQN----------LLQGNLKEFLLLYPDIQIQLI-L---DNKDIDISMDYADCAIR-LR-KPIQSSS 154 (299)
Q Consensus 91 ~~g~i~I~~~~~~~~~----------~l~~~l~~f~~~~P~i~i~i~-~---~~~~~~l~~~~~Di~i~-~~-~~~~~~~ 154 (299)
.+|.||||+....... +..+++..+.++- ++++... . ......|..|++|+++. +. .+.....
T Consensus 11 ~~g~lrV~~~~~pP~~~~~~~G~~~G~~~dl~~~ia~~l-g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~ 89 (257)
T 2q88_A 11 EQGFARIAIANEPPFTAVGADGKVSGAAPDVAREIFKRL-GVADVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAA 89 (257)
T ss_dssp HHTEEEEEECCCTTTCEECTTCCEESHHHHHHHHHHHHT-TCCEEEEEECCGGGHHHHHHTTSCSEECSCCBCCHHHHTT
T ss_pred CCCEEEEEECCCCCCEEECCCCCEEEHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECCHHHCCH
T ss_conf 299699998689994479999988878999999999993-9977998469999999999759988477643415432431
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
Q ss_conf 1-223455543321123443211122222211000112356643321100023566520223432121145324200135
Q gi|254780282|r 155 L-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 (299)
Q Consensus 155 l-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 233 (299)
+ ...+++.....+++.++.+.......++.++........ .......++.. ...+......+++...++.
T Consensus 90 ~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~-----~g~~~~~~~~~----~~~~~~~i~~~~~~~~~~~ 160 (257)
T 2q88_A 90 VAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAP-----GGGTEEKLALE----AGVPRDRVIVVPDGQSGLK 160 (257)
T ss_dssp SEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEEC-----TTSHHHHHHHH----TTCCGGGEEECSSHHHHHH
T ss_pred HHCCCCEECCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEE-----CCCHHHHHHHH----CCCCCCCEEEEHHHHHHHH
T ss_conf 00586611267314675364113331334541478569983-----58569999998----1898662232001678889
Q ss_pred HHHHHCCEE-EEEHHHH----C--CCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 678738423-3117776----0--1998466177666766008999348778888999999999999
Q gi|254780282|r 234 YCVLGSGIA-LLPDYIV----K--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 (299)
Q Consensus 234 ~v~~g~Gia-~lp~~~~----~--~~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~ 293 (299)
++..|..=+ +.+...+ + ....+..+.+....+...++++.+++ ++.....++.-+.+
T Consensus 161 ~l~~GrvD~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~---~~~L~~~in~~l~~ 224 (257)
T 2q88_A 161 MLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKG---DEALRDAFDVELAK 224 (257)
T ss_dssp HHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGG---GHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEECCC---CHHHHHHHHHHHHH
T ss_conf 98769647999659999999984799986996156677631168998899---99999999999999