HHsearch results for GI: 254780282 and protein with PDBid: 3bpv_A
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.32 E-value=0.00032 Score=42.56 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----CCEEEEECCCCCCCCCCCCC
Q ss_conf 88889999999999827--689999882899789999999999995882179769-----94685001343322222222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG--SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-----RGLTLTEQGSKLHRVTSEVY 74 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g--s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~-----~~~~lT~~G~~l~~~a~~~l 74 (299)
+++..++.++..+.+++ +.+.-|+.+++++|+||+.|++||+. |.---.+++ ..+.+|+.|+.+++......
T Consensus 26 ~lt~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~-glv~r~~~~~DrR~~~l~lT~~G~~l~~~~~~~~ 104 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEES-GFIEREQDPENRRRYILEVTRRGEEIIPLILKVE 104 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 989999999999985899799999999897987999999999968-9878602899887568788989999999999999
Q ss_pred CCCCHH
Q ss_conf 221012
Q gi|254780282|r 75 HKLETT 80 (299)
Q Consensus 75 ~~~~~~ 80 (299)
....+.
T Consensus 105 ~~~~~~ 110 (138)
T 3bpv_A 105 ERWEDL 110 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999