HHsearch results for GI: 254780282 and protein with PDBid: 3fd3_A
>3fd3_A Chromosome replication initiation inhibitor protein; structural genomics, LYSR, PSI-2, protein structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=5.4e-27 Score=174.51 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=154.5
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222333211100000000013566754200012222222--222-22222222223456543211112234555433211
Q gi|254780282|r 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN--KDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~--~~~-~l~~~~~Di~i~~~~~~~~~~l~~~~l~~~~~~~v 168 (299)
++++||+++......|++|.|.+|.+.|| +++++..++ ... .+.+|++|++|... +..++++..++|+++++++|
T Consensus 1 r~tlria~~~~sl~~wl~P~L~~f~~~~p-i~l~l~~~~~~~~~~~l~~g~~D~aI~~~-~~~~~~l~~~~L~~~~~~~v 78 (208)
T 3fd3_A 1 RVTLNIATNADSLGTWFLDAVSKFTGGSD-YLVNIAVDDQDHTVEWLRGGRVLAAVTAH-DKPVQGCRVTPLGVLRYHAT 78 (208)
T ss_dssp CCEEEEEECHHHHTTTHHHHHHHHHHTSS-CEEEEEECCSSCHHHHHHTTSCSEEEESC-CSCCTTCEEEEEEEEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCHHHHHHHHCCCEEEEEECC-CCCCCCEEEEEEEEEEEEEE
T ss_conf 95789987738789889999999999797-97999994566278887579759999838-99999869999460279999
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCEEEEEHH
Q ss_conf 234432111-2222221100011235664332110002356652022343212114532420013567873842331177
Q gi|254780282|r 169 AAPHYLKNC-REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 (299)
Q Consensus 169 ~~~~~~~~~-~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~Gia~lp~~ 247 (299)
|+|+|+.+. +.+.+++||.++|+|.+....... ..+........... ....+++..+++++|.+|+||+++|.+
T Consensus 79 asp~~~~~~~~~~~~~~dL~~~p~i~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~G~Gia~lP~~ 153 (208)
T 3fd3_A 79 ASPDFMARHFADGVTPAALARAPGLTFNQKDRLQ---ASWIRTALGEDVSY--PTHWLPSTDGFVKASLAGMGWGLNPVQ 153 (208)
T ss_dssp ECHHHHHHHCTTCSCHHHHTTSCEEESSTTCCHH---HHHHHHHHSSCCCC--CEEECCCHHHHHHHHHTTSCBEEEEHH
T ss_pred ECHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCH---HHHHHHCCCCCCCC--CEEEECCHHHHHHHHHHCCCEEECCHH
T ss_conf 8349998637999999999508633225666411---35566414766544--337888899999999939947748599
Q ss_pred HHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 7601---998466177666766008999348778888999999999999850669
Q gi|254780282|r 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 (299)
Q Consensus 248 ~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~~~ 299 (299)
++++ +|+|+++.++. ..++.++|++.+..++++++|.++|.+.+|+|-+
T Consensus 154 ~v~~~l~~g~Lv~l~p~~---~~~v~ly~~~~r~~s~~~~~~~~~l~~~ar~~l~ 205 (208)
T 3fd3_A 154 LVAEHLAAGRLVELMPGT---PLDIPLYWQVNRLAAERLAGLTANMVGTARVVLM 205 (208)
T ss_dssp HHHHHHHHTSSEESSTTC---CEEEEEEEEECTTTTTTTHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHCCCEEEECCCC---CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999998789868979998---6615479764776898999999999999877546