HHsearch results for GI: 254780282 and protein with PDBid: 3hv1_A
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=93.29 E-value=0.34 Score=24.99 Aligned_cols=184 Identities=10% Similarity=-0.026 Sum_probs=87.3
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 222333211100000-----------000013566754200012222222---222222222222234565--4321111
Q gi|254780282|r 92 SGKLRIATTIDLGQN-----------LLQGNLKEFLLLYPDIQIQLILDN---KDIDISMDYADCAIRLRK--PIQSSSL 155 (299)
Q Consensus 92 ~g~i~I~~~~~~~~~-----------~l~~~l~~f~~~~P~i~i~i~~~~---~~~~l~~~~~Di~i~~~~--~~~~~~l 155 (299)
++.|+||....+.+. +..+++..+.++- ++++++...+ ....+..|++|+++.... +.....+
T Consensus 20 ~~~l~vg~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~l-g~~v~~~~~~~~~~~~~l~~g~~Di~~~~~~~~~~r~~~~ 98 (268)
T 3hv1_A 20 EKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKLY-GIDVEWQAIDWDMKETELKNGTIDLIWNGYSVTDERKQSA 98 (268)
T ss_dssp HTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHTT-TCEEEEEECCGGGHHHHHHHTSCSEECSSCBCCHHHHTTC
T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHH-CCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCE
T ss_conf 997999987898895589999988872999999999996-9965751588899999998699760023266785444115
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf -2234555433211234432111222222110001123566433211000235665202234321211453242001356
Q gi|254780282|r 156 -IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 (299)
Q Consensus 156 -~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 234 (299)
...+++....++++.++. ...+++||.+....... +..... ........ .....+.....++++...++.+
T Consensus 99 ~~s~py~~~~~~~v~~~~~-----~~~~~~dl~~~~i~v~~-gs~~~~-~~~~~~~~-~~~~~~~~~i~~~~~~~~~l~~ 170 (268)
T 3hv1_A 99 DFTEPYMVNEQVLVTKKSS-----GIDSVAGMAGKTLGAQA-GSSGYD-AFNASPKI-LKDVVANQKVVQYSTFTQALID 170 (268)
T ss_dssp EECCCCEEECEEEEEEGGG-----CCCSSGGGTTCCEEEET-TCHHHH-HHHHCTTT-TTTTSGGGCEEEESSHHHHHHH
T ss_pred EECCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEEEC-CCHHHH-HHHHHHHH-HHHCCCCCEEEECCCHHHHHHH
T ss_conf 6321213564368986899-----99997895798238866-850999-99986655-5431667324403999999999
Q ss_pred HHHHCC-EEEEEHHH----HCCCC--CEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 787384-23311777----60199--84661776667660089993487788889999999
Q gi|254780282|r 235 CVLGSG-IALLPDYI----VKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 (299)
Q Consensus 235 v~~g~G-ia~lp~~~----~~~~~--~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d 288 (299)
+.+|.. ..+..... +++.+ ....+.+. ......+++..+++ ++.....++
T Consensus 171 L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~---~~~L~~~in 227 (268)
T 3hv1_A 171 LNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPA-GYEGESFAVGARKV---DKTLIKKIN 227 (268)
T ss_dssp HHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEEC-SSCCEEECCEECTT---CHHHHHHHH
T ss_pred HHCCCEEEEEECHHHHHHHHHHCCCCCCEEECCC-CCCCCEEEEEEECC---CHHHHHHHH
T ss_conf 9769757999438999999985898883033377-77774389998189---999999999