HHsearch results for GI: 254780282 and protein with PDBid: 3isp_A

>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=100.00  E-value=0  Score=322.34  Aligned_cols=285  Identities=15%  Similarity=0.129  Sum_probs=234.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf             98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r    1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT   80 (299)
Q Consensus         1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~   80 (299)
                      |.||+++|++|++|+++|||++||++|||||||||++|++||++||++||+|+ |++.||++|+.|+++++.++...+++
T Consensus         4 ~~~d~~~L~~f~av~~~gS~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~-r~~~lT~~G~~ll~~~~~il~~~~~~   82 (303)
T 3isp_A            4 PQLDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-KPCRATTAGIPLLRLAAQTALLESEA   82 (303)
T ss_dssp             -CCCSHHHHHHHHHHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECS-SSCEECGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECC-CCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             98899999999999981999999999787989999999999998398029979-99575315021136688999999875


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21001223222222333211100000000013566754200012222222222222222222234565432111122345
Q gi|254780282|r   81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL  160 (299)
Q Consensus        81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l  160 (299)
                      ...++.......|.++|+++++++..++++.+.+|.+.+|++++.... .....+.+|.+|++|... +.+.+++...++
T Consensus        83 ~~~~~~~~~~~~~~l~i~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~-~~~~~l~~g~~d~~i~~~-~~~~~~~~~~~l  160 (303)
T 3isp_A           83 LAEMGGNASLKRTRITIAVNADSMATWFSAVFDGLGDVLLDVRIEDQD-HSARLLREGVAMGAVTTE-RNPVPGCRVHPL  160 (303)
T ss_dssp             TTTTC--CTTCCEEEEEEECHHHHHTTGGGGGTTCCSEEEEEEECCHH-HHHHHHHTTSCSEEEESC-CSCCTTEEEEEE
T ss_pred             HHCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCHHHHCCCCC-CHHHHHHCCEEEEEECCC-CCCCCCCEEEEE
T ss_conf             310112244553058997412134455455531354100111112100-056663047477764157-889877526881


Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf             55433211234432111-22222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r  161 VTIHMHAYAAPHYLKNC-REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS  239 (299)
Q Consensus       161 ~~~~~~~v~~~~~~~~~-~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~  239 (299)
                      ++++++++++++|+... ..+.+..++.+++++.+........   .+..........  ...+++++..+++++|.+|.
T Consensus       161 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~s~~~~~~~v~~G~  235 (303)
T 3isp_A          161 GEMRYLPVASRPFVQRHLSDGFTAAAAAKAPSLAWNRDDGLQD---MLVRKAFRRAIT--RPTHFVPTTEGFTAAARAGL  235 (303)
T ss_dssp             EEEEEEEEECHHHHHHHCTTCSCTTTTTTSCBCCSSTTCCHHH---HHHHHHHSSCCC--CCBCCCCSHHHHHHHHHTTS
T ss_pred             CCCEEEEEECCHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHH---HHHHHHHCCCCC--CCEEEECHHHHHHHHHHHCC
T ss_conf             1330899988279874368887720100274323477750778---999986213677--86066250899999999399


Q ss_pred             CEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             423311777601---9984661776667660089993487788889999999999998506
Q gi|254780282|r  240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW  297 (299)
Q Consensus       240 Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~  297 (299)
                      |||++|.+++++   +|.+|.+.+.    ..++.++|++.+..+|.+++|++++.+.++++
T Consensus       236 Gia~lP~~~~~~~l~~g~Lv~l~~~----~~~~~L~w~~~~~~~~~~~~~~~~~~~~a~~~  292 (303)
T 3isp_A          236 GWGMFPEKLAASPLADGSFVRVCDI----HLDVPLYWQCWKLDSPIIARITDTVRAAASGL  292 (303)
T ss_dssp             CBEEEEHHHHHHHHHHSSCEESSSC----CEEEEEEEEEESSCCHHHHHHHHHHHHHTTTS
T ss_pred             EEEECCHHHHHHHHHCCCEEECCCC----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7998749999999977985873698----86346787606768989999999999999998