HHsearch results for GI: 254780282 and protein with PDBid: 3isp_A
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=322.34 Aligned_cols=285 Identities=15% Similarity=0.129 Sum_probs=234.5
Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 98888999999999982768999988289978999999999999588217976994685001343322222222221012
Q gi|254780282|r 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETT 80 (299)
Q Consensus 1 m~md~~~L~~f~~v~~~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~~ 80 (299)
|.||+++|++|++|+++|||++||++|||||||||++|++||++||++||+|+ |++.||++|+.|+++++.++...+++
T Consensus 4 ~~~d~~~L~~f~av~~~gS~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~-r~~~lT~~G~~ll~~~~~il~~~~~~ 82 (303)
T 3isp_A 4 PQLDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-KPCRATTAGIPLLRLAAQTALLESEA 82 (303)
T ss_dssp -CCCSHHHHHHHHHHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECS-SSCEECGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEECC-CCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999981999999999787989999999999998398029979-99575315021136688999999875
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21001223222222333211100000000013566754200012222222222222222222234565432111122345
Q gi|254780282|r 81 QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160 (299)
Q Consensus 81 ~~~~~~~~~~~~g~i~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~l~~~~~Di~i~~~~~~~~~~l~~~~l 160 (299)
...++.......|.++|+++++++..++++.+.+|.+.+|++++.... .....+.+|.+|++|... +.+.+++...++
T Consensus 83 ~~~~~~~~~~~~~~l~i~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~-~~~~~l~~g~~d~~i~~~-~~~~~~~~~~~l 160 (303)
T 3isp_A 83 LAEMGGNASLKRTRITIAVNADSMATWFSAVFDGLGDVLLDVRIEDQD-HSARLLREGVAMGAVTTE-RNPVPGCRVHPL 160 (303)
T ss_dssp TTTTC--CTTCCEEEEEEECHHHHHTTGGGGGTTCCSEEEEEEECCHH-HHHHHHHTTSCSEEEESC-CSCCTTEEEEEE
T ss_pred HHCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCHHHHCCCCC-CHHHHHHCCEEEEEECCC-CCCCCCCEEEEE
T ss_conf 310112244553058997412134455455531354100111112100-056663047477764157-889877526881
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHC
Q ss_conf 55433211234432111-22222211000112356643321100023566520223432121145324200135678738
Q gi|254780282|r 161 VTIHMHAYAAPHYLKNC-REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 (299)
Q Consensus 161 ~~~~~~~v~~~~~~~~~-~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~ 239 (299)
++++++++++++|+... ..+.+..++.+++++.+........ .+.......... ...+++++..+++++|.+|.
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~s~~~~~~~v~~G~ 235 (303)
T 3isp_A 161 GEMRYLPVASRPFVQRHLSDGFTAAAAAKAPSLAWNRDDGLQD---MLVRKAFRRAIT--RPTHFVPTTEGFTAAARAGL 235 (303)
T ss_dssp EEEEEEEEECHHHHHHHCTTCSCTTTTTTSCBCCSSTTCCHHH---HHHHHHHSSCCC--CCBCCCCSHHHHHHHHHTTS
T ss_pred CCCEEEEEECCHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHH---HHHHHHHCCCCC--CCEEEECHHHHHHHHHHHCC
T ss_conf 1330899988279874368887720100274323477750778---999986213677--86066250899999999399
Q ss_pred CEEEEEHHHHCC---CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 423311777601---9984661776667660089993487788889999999999998506
Q gi|254780282|r 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 (299)
Q Consensus 240 Gia~lp~~~~~~---~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~~~~r~~ 297 (299)
|||++|.+++++ +|.+|.+.+. ..++.++|++.+..+|.+++|++++.+.++++
T Consensus 236 Gia~lP~~~~~~~l~~g~Lv~l~~~----~~~~~L~w~~~~~~~~~~~~~~~~~~~~a~~~ 292 (303)
T 3isp_A 236 GWGMFPEKLAASPLADGSFVRVCDI----HLDVPLYWQCWKLDSPIIARITDTVRAAASGL 292 (303)
T ss_dssp CBEEEEHHHHHHHHHHSSCEESSSC----CEEEEEEEEEESSCCHHHHHHHHHHHHHTTTS
T ss_pred EEEECCHHHHHHHHHCCCEEECCCC----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7998749999999977985873698----86346787606768989999999999999998