HHsearch results for GI: 254780282 and protein with PDBid: 3jth_A
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.18 E-value=0.019 Score=32.30 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 99999999998-2768999988289978999999999999588217976994
Q gi|254780282|r 6 DKLRVFYVVAR-SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56 (299)
Q Consensus 6 ~~L~~f~~v~~-~gs~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~~~~ 56 (299)
..++.+..+.+ ..+++.=|+.+++|||+||+|++.|++ -|.--..|.|+.
T Consensus 24 ~Rl~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~-aglV~~~r~G~~ 74 (98)
T 3jth_A 24 RRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRR-DGLVTTRKEAQT 74 (98)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH-TTSEEEECCTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCEEEEEECCE
T ss_conf 999999999729937999999988595678899999998-894269987689