HHsearch results for GI: 254780282 and protein with PDBid: 3mpk_A
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=93.03 E-value=0.34 Score=24.99 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=90.1
Q ss_pred CCCCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCC-CCC---CCCCCCCCCCCCCCCCCC-CCCCCCC-
Q ss_conf 22333211100000-----------000013566754200012222-222---222222222222234565-4321111-
Q gi|254780282|r 93 GKLRIATTIDLGQN-----------LLQGNLKEFLLLYPDIQIQLI-LDN---KDIDISMDYADCAIRLRK-PIQSSSL- 155 (299)
Q Consensus 93 g~i~I~~~~~~~~~-----------~l~~~l~~f~~~~P~i~i~i~-~~~---~~~~l~~~~~Di~i~~~~-~~~~~~l- 155 (299)
+.|+||+.+...+. +..+++..+.+.. ++++++. ..+ ...++..|++|++..+.. +.....+
T Consensus 32 ~~l~v~~~~~~~P~~~~~~~g~~~G~~~dll~~i~~~l-g~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~t~~r~~~~~ 110 (267)
T 3mpk_A 32 PVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRT-GLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSARESFLS 110 (267)
T ss_dssp SEEEEEEETEETTTEECCTTCCCBSHHHHHHHHHHHHH-CCEEEEEEESSHHHHHHHHHHTSCSEEEEEECCGGGTTTEE
T ss_pred CEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCCEEEEECCCCCHHHHHCCC
T ss_conf 93999984898995699899988778999999999984-99579998289999999863696659964789988984077
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf 22345554332112344321112222221100011235664332110002356652022343212114532420013567
Q gi|254780282|r 156 IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 (299)
Q Consensus 156 ~~~~l~~~~~~~v~~~~~~~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v 235 (299)
...+++....+++..++. ....++++|.+..+.... +.. ....+... .+......+++...++.++
T Consensus 111 ~s~p~~~~~~~~v~~~~~----~~~~~~~~l~g~~i~~~~-g~~----~~~~l~~~-----~~~~~i~~~~~~~~~l~~L 176 (267)
T 3mpk_A 111 FSRPYVRNGMVIVTRQDP----DAPVDADHLDGRTVALVR-NSA----AIPLLQRR-----YPQAKVVTADNPSEAMLMV 176 (267)
T ss_dssp ECSCSEEECEEEEEESST----TSCSSGGGCTTCEEEEET-TCT----HHHHHHHH-----CTTSEEEEESSHHHHHHHH
T ss_pred CCCCEECCCEEEEEECCC----CCCCCHHHHCCCCEEEEC-CCH----HHHHHHHH-----CCCCEEEEECCHHHHHHHH
T ss_conf 676213044045420144----345798896587305541-540----56999972-----8874179980689877898
Q ss_pred HHHCCEEEE-EHHH----HCC--CCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 873842331-1777----601--9984661776667660089993487788889999999999
Q gi|254780282|r 236 VLGSGIALL-PDYI----VKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 (299)
Q Consensus 236 ~~g~Gia~l-p~~~----~~~--~~~lv~i~~~~~~~~~~~~lv~~~~~~~~~~~~~f~d~l~ 291 (299)
..|..=+++ +... +++ .+.+ .+.......+..+++..+++ ++.+...++-.+
T Consensus 177 ~~GrvDa~i~~~~~~~~~l~~~~~~~~-~v~~~~~~~~~~~~~~~~k~---~~~L~~~in~~L 235 (267)
T 3mpk_A 177 ANGQADAVVQTQISASYYVNRYFAGKL-RIASALDLPPAEIALATTRG---QTELMSILNKAL 235 (267)
T ss_dssp HHTSCSEEEEEHHHHHHHHHHHCTTTE-EEEEECSSCCEEEEEEEETT---CHHHHHHHHHHH
T ss_pred HCCCCCEEECCHHHHHHHHHHCCCCCE-EEEECCCCCCEEEEEEEECC---CHHHHHHHHHHH
T ss_conf 879867684279999999983899976-99504677752699999489---999999999999