HHsearch results for GI: 254780282 and protein with PDBid: 3nqo_A
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.39 E-value=0.00012 Score=44.93 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEEEECCCCCCCCC
Q ss_conf 88889999999999827----68999988289978999999999999588217976-------99468500134332222
Q gi|254780282|r 2 SFDWDKLRVFYVVARSG----SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-------ARGLTLTEQGSKLHRVT 70 (299)
Q Consensus 2 ~md~~~L~~f~~v~~~g----s~s~AA~~L~itq~avS~~i~~LE~~lg~~Lf~R~-------~~~~~lT~~G~~l~~~a 70 (299)
+++..+..++..+...+ +++.=|+.+++++|+||+.|++||+. -|+.|. ...+.||+.|+.+++.+
T Consensus 38 ~Lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~~Le~~---glI~r~~~~~D~R~~~l~LT~kG~~~~~~~ 114 (189)
T 3nqo_A 38 ILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN---GYVDVIPSPHDKRAINVKVTDLGKKVMVTC 114 (189)
T ss_dssp SSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT---TSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC---CCCEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 99999999999998478999099999999896886999999999987---986374326765401346788899999999
Q ss_pred CCCCCCCC
Q ss_conf 22222210
Q gi|254780282|r 71 SEVYHKLE 78 (299)
Q Consensus 71 ~~~l~~~~ 78 (299)
........
T Consensus 115 ~~~~~~~~ 122 (189)
T 3nqo_A 115 SRTGINFM 122 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999