BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] (299 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254039959|gb|ACT56755.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 299/299 (100%), Positives = 299/299 (100%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT Sbjct: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP Sbjct: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP Sbjct: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG Sbjct: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF Sbjct: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 >gi|315122842|ref|YP_004063331.1| putative transcription regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496244|gb|ADR52843.1| putative transcription regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 298 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/299 (82%), Positives = 267/299 (89%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MSFDWDKLRVFYVVA+ GSFT AAEQL+LSQS+ISRQISGLE E+G KLFYRHARGL LT Sbjct: 1 MSFDWDKLRVFYVVAKFGSFTSAAEQLNLSQSAISRQISGLEAEIGSKLFYRHARGLILT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQGSKLH V S+V KLE+ QIELQESS KPSGKLRIATTIDLGQNLLQ + KEFLLLYP Sbjct: 61 EQGSKLHNVASDVCQKLESIQIELQESSEKPSGKLRIATTIDLGQNLLQDSFKEFLLLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+IQ ILDNKDIDISM YADCAIRLRKP QSS LIQRKLVTI+MH YAAPHYLK EP Sbjct: 121 DIKIQFILDNKDIDISMCYADCAIRLRKPSQSS-LIQRKLVTINMHVYAAPHYLKRRGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LSIQ+LD H+L+TFGDLIPKCMEDFNWLATV R EPRIS LQ+NSYLSIMQYC+LGSG Sbjct: 180 LSIQDLDNHDLLTFGDLIPKCMEDFNWLATVGRAPHEPRISSLQINSYLSIMQYCILGSG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IALLPDYIVKDN N+VR+MEDV PSF VYFCYPEALKNTGKLKAFR+FI LKA++WKF Sbjct: 240 IALLPDYIVKDNSNIVRVMEDVSMPSFEVYFCYPEALKNTGKLKAFRDFIVLKAQNWKF 298 >gi|227822113|ref|YP_002826084.1| transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] gi|227341113|gb|ACP25331.1| transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 298 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/299 (57%), Positives = 221/299 (73%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT Sbjct: 1 MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGIKLFHRHARGLILT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R EV KLE+ + +L E++ KPSGKLRI TT+ LGQ L ++EF+ LYP Sbjct: 61 EQGEMLYRTAHEVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 121 DVQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHIYAAPSYINKNGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 SIQ+LD H +ITFG+ P + D NWL R PR+S LQ+NS SI + C+LG G Sbjct: 180 QSIQDLDNHRIITFGEPAPNYLLDVNWLEIAGRDPDNPRVSHLQINSQTSIKRACLLGIG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDYIV +P L+++ PSF YFCYP+ +KN KLK FR++I KAR+W F Sbjct: 240 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDEMKNAAKLKVFRDYIVAKARNWNF 298 >gi|15965319|ref|NP_385672.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307307945|ref|ZP_07587670.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307317176|ref|ZP_07596617.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|15074499|emb|CAC46145.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021] gi|306897264|gb|EFN28009.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306901561|gb|EFN32164.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 302 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 172/299 (57%), Positives = 220/299 (73%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT Sbjct: 5 MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSSLEQDVGIKLFHRHARGLILT 64 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLE+ + +L E++ KPSGKLRI TT+ LGQ L ++EF+ LYP Sbjct: 65 EQGEMLYRTAHDVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMSLYP 124 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 125 EIQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINKYGEP 183 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ +LD H +ITFG+ P + D NWL R PRIS LQ+NS SI + C+LG G Sbjct: 184 QSLDDLDNHRIITFGEPAPNYLLDVNWLEIAGRDSDNPRISHLQINSQTSIKRACLLGIG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDYIV +P L+++ PSF YFCYP+ LKN KLK FR++I KAR+W F Sbjct: 244 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDELKNAAKLKVFRDYIVAKARNWNF 302 >gi|150396465|ref|YP_001326932.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027980|gb|ABR60097.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 298 Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 172/299 (57%), Positives = 220/299 (73%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT Sbjct: 1 MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSSLEQDVGIKLFHRHARGLILT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLE+ + +L E++ KPSGKLRI TT+ LGQ L ++EF+ LYP Sbjct: 61 EQGEMLYRTAHDVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMSLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 121 EIQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINKFGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ +LD H +ITFG+ P + D NWL R PRIS LQ+NS SI + C+LG G Sbjct: 180 QSLDDLDNHRIITFGEPAPNYLLDVNWLEIAGRDSDNPRISHLQINSQTSIKRACLLGIG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDYIV +P L+++ PSF YFCYP+ LKN KLK FR++I KAR+W F Sbjct: 240 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDELKNAAKLKVFRDYIVSKARNWNF 298 >gi|222086562|ref|YP_002545096.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724010|gb|ACM27166.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 303 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 168/299 (56%), Positives = 219/299 (73%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT Sbjct: 6 MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGIKLFHRHARGLILT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ KPSGKLR+ TT+ LGQ L ++EFL LYP Sbjct: 66 EQGELLYRTAHDVLLKLETVKMQLTETTDKPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 126 DMQIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRYGEP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+++LD H +I+FG+ P + D NWL R R+ LQ+NS SI + C+LG G Sbjct: 185 QSVEDLDDHRIISFGEPAPNYLLDVNWLEIAGRSSDNKRLPHLQINSQTSIKRACLLGIG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDYIV +P L+++ + PSF YFCYP+ +KN KLK FR+F+ KAR W F Sbjct: 245 IAVLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEMKNAAKLKVFRDFVVAKARKWNF 303 >gi|86358578|ref|YP_470470.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|190892727|ref|YP_001979269.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|86282680|gb|ABC91743.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] gi|190698006|gb|ACE92091.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|327193729|gb|EGE60608.1| LysR family transcriptional regulator [Rhizobium etli CNPAF512] Length = 298 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 169/299 (56%), Positives = 217/299 (72%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT Sbjct: 1 MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ PSGKLR+ TT+ LGQ L ++EFL LYP Sbjct: 61 EQGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 121 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 I++LD H +ITFG+ P + D NWL R RI LQ+NS SI + C+LG G Sbjct: 180 QKIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +A LPDYIV +P L+++ + PSF YFCYP+ +KN KLKAFR+FI KAR+W F Sbjct: 240 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 298 >gi|116253171|ref|YP_769009.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257819|emb|CAK08917.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 303 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 168/299 (56%), Positives = 217/299 (72%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT Sbjct: 6 MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ KPSGKLR+ TT+ LGQ L ++EFL LYP Sbjct: 66 EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++LD H +ITFG+ P + D NWL R RI LQ+NS SI + +LG G Sbjct: 185 QKVEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +A LPDYIV +P L+++ + PSF YFCYP+ +KN KLKAFR+FI KAR+W F Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303 >gi|325293546|ref|YP_004279410.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gi|325061399|gb|ADY65090.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 300 Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 168/299 (56%), Positives = 218/299 (72%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT Sbjct: 3 MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ KPSGKLR+ TT+ LGQ L ++EFL LYP Sbjct: 63 EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 123 EMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 SI++LD H +I+FG+ P + D NWL R RI LQ+NS SI + C+LG G Sbjct: 182 QSIEDLDNHRIISFGEPAPNYLLDVNWLENAGRSSDNTRIPHLQINSQTSIKRACLLGIG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA LPDYIV +P L+++ PSF YFCYP+ +KN KLKAFR+F+ KAR+W F Sbjct: 242 IACLPDYIVGRDPGLIQLSLAADIPSFDTYFCYPDEMKNAAKLKAFRDFVVAKARNWNF 300 >gi|15889466|ref|NP_355147.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157334|gb|AAK87932.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 300 Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 168/299 (56%), Positives = 218/299 (72%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT Sbjct: 3 MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ KPSGKLR+ TT+ LGQ L ++EFL LYP Sbjct: 63 EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 123 EMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+++LD H +I+FG+ P + D NWL R RI LQ+NS SI + C+LG G Sbjct: 182 QSVEDLDNHRIISFGEPAPNYLLDVNWLENAGRSSDNTRIPHLQINSQTSIKRACLLGIG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA LPDYIV +P L+++ PSF YFCYP+ +KN KLKAFR+FI KAR+W F Sbjct: 242 IACLPDYIVGRDPGLIQLSLAADIPSFDTYFCYPDEMKNAAKLKAFRDFIVAKARNWNF 300 >gi|209550302|ref|YP_002282219.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536058|gb|ACI55993.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 303 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 168/299 (56%), Positives = 216/299 (72%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT Sbjct: 6 MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ PSGKLR+ TT+ LGQ L ++EFL LYP Sbjct: 66 EQGELLYRTAHDVLLKLETVKMQLTETNETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 I++LD H +ITFG+ P + D NWL R RI LQ+NS SI + +LG G Sbjct: 185 QKIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +A LPDYIV +P L+++ + PSF YFCYP+ +KN KLKAFR+FI KAR+W F Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303 >gi|241205685|ref|YP_002976781.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859575|gb|ACS57242.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 303 Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 167/299 (55%), Positives = 216/299 (72%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT Sbjct: 6 MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEHDVGTKLFHRHARGLILT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ PSGKLR+ TT+ LGQ L ++EFL LYP Sbjct: 66 EQGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++LD H +ITFG+ P + D NWL R RI LQ+NS SI + +LG G Sbjct: 185 QKVEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +A LPDYIV +P L+++ + PSF YFCYP+ +KN KLKAFR+FI KAR+W F Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303 >gi|222149305|ref|YP_002550262.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221736289|gb|ACM37252.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 304 Score = 355 bits (910), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 165/299 (55%), Positives = 218/299 (72%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT Sbjct: 7 IPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 66 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ KPSGKLR+ TT+ LGQ L ++EFL LYP Sbjct: 67 EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 126 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 127 DMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRYGEP 185 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +I++LD H +I+FG+ P + D NWL R RI LQ+NS SI + C+LG G Sbjct: 186 QTIEDLDNHRIISFGEPAPNYLLDVNWLEVAGRSSDNRRIPHLQINSQTSIKRACLLGIG 245 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +A +PDYIV +P L+++ + PSF YFCYP+ +KN KLK FR+FI KAR+W F Sbjct: 246 VACMPDYIVGRDPGLIQLPINAEVPSFDTYFCYPDEMKNAAKLKVFRDFIVSKARNWNF 304 >gi|319408891|emb|CBI82548.1| transcriptional regulator, LysR family [Bartonella schoenbuchensis R1] Length = 301 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 160/298 (53%), Positives = 212/298 (71%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ A +GSFTHAAE+LHLSQS+ISRQ++ LE +VG+ LF RHARGL LTEQ Sbjct: 5 LDWDKLRVFHAAAEAGSFTHAAEKLHLSQSAISRQVAALEQDVGVPLFQRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ESS KP+G+LR+ +T +G L EFL LYPD+ Sbjct: 65 GEILYRTAYDVLMKLENARSQLNESSKKPTGRLRVTSTFGMGAGWLAKRAHEFLSLYPDM 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QIQL+LD+K+ID+++ YADCA+RLR+P Q LIQRKL T+HMH YA+ +Y+ +P Sbjct: 125 QIQLLLDDKEIDLTIRYADCAVRLRQP-QQPGLIQRKLFTVHMHVYASVNYIATYGKPEK 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + ELD H +I+FG+ +P + NWL R G R+S LQ+N+ +SI + GIA Sbjct: 184 LSELDSHRIISFGEPVPSYLSGLNWLEKAGRSDGSLRVSALQINNIISIKNALMRDFGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDYIV +N LVR+ D++ PSF +FCYP+ALKN+ KL AFR++IFLKAR W F Sbjct: 244 VLPDYIVNNNEQLVRLFPDMVDIPSFDTFFCYPDALKNSAKLNAFRDYIFLKARKWSF 301 >gi|110634460|ref|YP_674668.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285444|gb|ABG63503.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1] Length = 296 Score = 337 bits (865), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 155/297 (52%), Positives = 208/297 (70%), Gaps = 1/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ A +GSFTHAAE LHLSQS+ISRQ+S LE E+G+ LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAAAAAGSFTHAAESLHLSQSAISRQVSALEQELGVSLFHRHARGLVLTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLET ++ L E+ +PSG LR++TT+ LG L L EF LYPDI Sbjct: 61 GEMLYRTAHDVLMKLETVKVRLSEAKDRPSGVLRVSTTVGLGNGWLTERLPEFGALYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+Q+ILDN+++D++M ADCA+R+R+P Q LIQRKL T+H H YA+P YL +P S Sbjct: 121 QLQVILDNEELDLTMRQADCALRMRQP-QQPDLIQRKLFTVHFHLYASPAYLNRYGKPNS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I ELD+H ++ FG+ +P + D NWL T RP G R + LQ+N+ LSI G+GIA Sbjct: 180 IDELDRHRIVIFGETVPPHLSDMNWLETAGRPEGSKRAAALQINNILSIKIAVQRGAGIA 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY V + LV+++ + PSF YFCYP+ +KN K++ FR+F+ K+R W + Sbjct: 240 ILPDYAVGSDSGLVQLLPETEVPSFDTYFCYPDTMKNQAKMQVFRDFLISKSRGWIY 296 >gi|163843752|ref|YP_001628156.1| hypothetical protein BSUIS_A1554 [Brucella suis ATCC 23445] gi|163674475|gb|ABY38586.1| Hypothetical protein BSUIS_A1554 [Brucella suis ATCC 23445] Length = 301 Score = 334 bits (857), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 156/298 (52%), Positives = 212/298 (71%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KPSG+LR+ TT+ LG L ++EF+ LYPD+ Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCA+RLR+P Q LIQR+L +HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+L P + NWL T RP G RI LQVN+ LS+ + G GIA Sbjct: 184 IDEIDQHRIVTFGELAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ KL AFR+F+F KAR+W + Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301 >gi|297248772|ref|ZP_06932490.1| LysR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|297175941|gb|EFH35288.1| LysR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 301 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 155/298 (52%), Positives = 211/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KPSG+LR+ TT+ LG L ++EF+ LYPD+ Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCA+RLR+P Q LIQR+L +HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLAMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL T RP G RI LQVN+ LS+ + G GIA Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ KL AFR+F+F KAR+W + Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301 >gi|17986796|ref|NP_539430.1| LysR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23502367|ref|NP_698494.1| LysR family transcriptional regulator [Brucella suis 1330] gi|62290387|ref|YP_222180.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82700309|ref|YP_414883.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus 2308] gi|148559572|ref|YP_001259377.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840] gi|161619445|ref|YP_001593332.1| hypothetical protein BCAN_A1535 [Brucella canis ATCC 23365] gi|189024613|ref|YP_001935381.1| LysR family transcriptional regulator [Brucella abortus S19] gi|225852977|ref|YP_002733210.1| hypothetical protein BMEA_A1549 [Brucella melitensis ATCC 23457] gi|237815892|ref|ZP_04594889.1| LysR family transcriptional regulator [Brucella abortus str. 2308 A] gi|254689685|ref|ZP_05152939.1| hypothetical protein Babob68_05829 [Brucella abortus bv. 6 str. 870] gi|254694175|ref|ZP_05156003.1| hypothetical protein Babob3T_05834 [Brucella abortus bv. 3 str. Tulya] gi|254697828|ref|ZP_05159656.1| hypothetical protein Babob28_08995 [Brucella abortus bv. 2 str. 86/8/59] gi|254704751|ref|ZP_05166579.1| hypothetical protein Bsuib36_12694 [Brucella suis bv. 3 str. 686] gi|254708163|ref|ZP_05169991.1| hypothetical protein BpinM_14724 [Brucella pinnipedialis M163/99/10] gi|254710536|ref|ZP_05172347.1| hypothetical protein BpinB_09771 [Brucella pinnipedialis B2/94] gi|254719535|ref|ZP_05181346.1| hypothetical protein Bru83_08328 [Brucella sp. 83/13] gi|254730717|ref|ZP_05189295.1| hypothetical protein Babob42_05849 [Brucella abortus bv. 4 str. 292] gi|256032029|ref|ZP_05445643.1| hypothetical protein BpinM2_15538 [Brucella pinnipedialis M292/94/1] gi|256045119|ref|ZP_05448020.1| hypothetical protein Bmelb1R_11564 [Brucella melitensis bv. 1 str. Rev.1] gi|256061551|ref|ZP_05451693.1| hypothetical protein Bneo5_14465 [Brucella neotomae 5K33] gi|256114056|ref|ZP_05454826.1| hypothetical protein Bmelb3E_14762 [Brucella melitensis bv. 3 str. Ether] gi|256257936|ref|ZP_05463472.1| hypothetical protein Babob9C_11436 [Brucella abortus bv. 9 str. C68] gi|256263543|ref|ZP_05466075.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str. 63/9] gi|256369914|ref|YP_003107425.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|260546925|ref|ZP_05822664.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038] gi|260565280|ref|ZP_05835764.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str. 16M] gi|260566004|ref|ZP_05836474.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40] gi|260755218|ref|ZP_05867566.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758438|ref|ZP_05870786.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762264|ref|ZP_05874607.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884232|ref|ZP_05895846.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261214481|ref|ZP_05928762.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261315671|ref|ZP_05954868.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261318109|ref|ZP_05957306.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261325559|ref|ZP_05964756.1| transcriptional regulator [Brucella neotomae 5K33] gi|261755448|ref|ZP_05999157.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265984543|ref|ZP_06097278.1| transcriptional regulator [Brucella sp. 83/13] gi|265989139|ref|ZP_06101696.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265991553|ref|ZP_06104110.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265995391|ref|ZP_06107948.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|306838474|ref|ZP_07471315.1| LysR family transcriptional regulator [Brucella sp. NF 2653] gi|306843154|ref|ZP_07475774.1| LysR family transcriptional regulator [Brucella sp. BO2] gi|306844500|ref|ZP_07477089.1| LysR family transcriptional regulator [Brucella sp. BO1] gi|17982427|gb|AAL51694.1| transcriptional regulatory protein, lysr family [Brucella melitensis bv. 1 str. 16M] gi|23348350|gb|AAN30409.1| transcriptional regulator, LysR family [Brucella suis 1330] gi|62196519|gb|AAX74819.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str. 9-941] gi|82616410|emb|CAJ11473.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Brucella melitensis biovar Abortus 2308] gi|148370829|gb|ABQ60808.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840] gi|161336256|gb|ABX62561.1| Hypothetical protein BCAN_A1535 [Brucella canis ATCC 23365] gi|189020185|gb|ACD72907.1| Bacterial regulatory protein LysR [Brucella abortus S19] gi|225641342|gb|ACO01256.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237789190|gb|EEP63401.1| LysR family transcriptional regulator [Brucella abortus str. 2308 A] gi|256000077|gb|ACU48476.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|260095975|gb|EEW79852.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038] gi|260151348|gb|EEW86442.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str. 16M] gi|260155522|gb|EEW90602.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40] gi|260668756|gb|EEX55696.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260672696|gb|EEX59517.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675326|gb|EEX62147.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260873760|gb|EEX80829.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916088|gb|EEX82949.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261297332|gb|EEY00829.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261301539|gb|EEY05036.1| transcriptional regulator [Brucella neotomae 5K33] gi|261304697|gb|EEY08194.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261745201|gb|EEY33127.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262766504|gb|EEZ12293.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263002337|gb|EEZ14912.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263093572|gb|EEZ17597.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str. 63/9] gi|264661336|gb|EEZ31597.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264663135|gb|EEZ33396.1| transcriptional regulator [Brucella sp. 83/13] gi|306275111|gb|EFM56867.1| LysR family transcriptional regulator [Brucella sp. BO1] gi|306286677|gb|EFM58235.1| LysR family transcriptional regulator [Brucella sp. BO2] gi|306406438|gb|EFM62676.1| LysR family transcriptional regulator [Brucella sp. NF 2653] gi|326409516|gb|ADZ66581.1| Bacterial regulatory protein LysR [Brucella melitensis M28] gi|326539224|gb|ADZ87439.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 301 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 155/298 (52%), Positives = 211/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KPSG+LR+ TT+ LG L ++EF+ LYPD+ Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCA+RLR+P Q LIQR+L +HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL T RP G RI LQVN+ LS+ + G GIA Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ KL AFR+F+F KAR+W + Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301 >gi|294852816|ref|ZP_06793489.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294821405|gb|EFG38404.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 306 Score = 331 bits (849), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 155/298 (52%), Positives = 211/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 10 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 69 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KPSG+LR+ TT+ LG L ++EF+ LYPD+ Sbjct: 70 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 129 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCA+RLR+P Q LIQR+L +HMH YA+ Y+ + S Sbjct: 130 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 188 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL T RP G RI LQVN+ LS+ + G GIA Sbjct: 189 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 248 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ KL AFR+F+F KAR+W + Sbjct: 249 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 306 >gi|49474486|ref|YP_032528.1| LysR family transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239990|emb|CAF26404.1| Transcription regulator (lysr family) [Bartonella quintana str. Toulouse] Length = 301 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 159/300 (53%), Positives = 214/300 (71%), Gaps = 2/300 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +S DWDKLRVF+ A +GSFTHAA++LHLSQS+ISRQ+S LE EVG+ LF RHARGL LT Sbjct: 3 LSLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQEVGVFLFQRHARGLILT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R T +V KLE+ +L ES KP+G LR+ +T +G L ++ EFL LYP Sbjct: 63 EQGEILYRTTHDVLMKLESAHSQLSESCEKPAGNLRVTSTCGMGAGWLVEHMPEFLSLYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+IQL+ D+K++D++M +ADCA+RL+KP Q LIQRKL TIHMH YA+ +Y+ N +P Sbjct: 123 DIRIQLLFDDKELDLTMRHADCAVRLQKP-QQPDLIQRKLFTIHMHVYASKNYIANYGKP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + ELD+H +I+FG+ +P + NWL + G R S L++N+ +SI + G Sbjct: 182 EKLSELDEHRIISFGESVPPYLSGLNWLEKAGKGDGSLRPSVLRINNVISIKNALMCDLG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDYIV ++ +LVR+ D++ PSF +FCYP ALKN KLKAFR++IF KAR W F Sbjct: 242 IAVLPDYIVDNDEHLVRLFPDMVDIPSFDTFFCYPYALKNLAKLKAFRDYIFSKARQWSF 301 >gi|254714718|ref|ZP_05176529.1| hypothetical protein BcetM6_15549 [Brucella ceti M644/93/1] gi|254717779|ref|ZP_05179590.1| hypothetical protein BcetM_15531 [Brucella ceti M13/05/1] gi|261219627|ref|ZP_05933908.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261322515|ref|ZP_05961712.1| transcriptional regulator [Brucella ceti M644/93/1] gi|260924716|gb|EEX91284.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261295205|gb|EEX98701.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 301 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 154/298 (51%), Positives = 210/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+ LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVGALEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KPSG+LR+ TT+ LG L ++EF+ LYPD+ Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCA+RLR+P Q LIQR+L +HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL T RP G RI LQVN+ LS+ + G GIA Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ KL AFR+F+F KAR+W + Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301 >gi|225627941|ref|ZP_03785977.1| LysR family transcriptional regulator [Brucella ceti str. Cudo] gi|260169165|ref|ZP_05755976.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99] gi|261758678|ref|ZP_06002387.1| bacterial regulatory protein LysR [Brucella sp. F5/99] gi|225617104|gb|EEH14150.1| LysR family transcriptional regulator [Brucella ceti str. Cudo] gi|261738662|gb|EEY26658.1| bacterial regulatory protein LysR [Brucella sp. F5/99] Length = 301 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 155/298 (52%), Positives = 211/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSVLEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KPSG+LR+ TT+ LG L ++EF+ LYPD+ Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCA+RLR+P Q LIQR+L +HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL T RP G RI LQVN+ LS+ + G GIA Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ KL AFR+F+F KAR+W + Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301 >gi|153008995|ref|YP_001370210.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560883|gb|ABS14381.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 301 Score = 328 bits (842), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 156/298 (52%), Positives = 210/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KP+G+LR+ TT+ LG L ++EF+ LYPDI Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESKEKPTGRLRVTTTVGLGSGWLIERIQEFVELYPDI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCAIRLR+P Q LIQR+L T+HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLTMRHADCAIRLRQP-QQPDLIQRRLFTVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL R G RI LQVN+ LSI + G GIA Sbjct: 184 IDEIDQHRVVTFGEPAPSYLTGLNWLEIAGRADGSTRIPALQVNNLLSIRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ KL AFR+F+F KAR+W + Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301 >gi|239832379|ref|ZP_04680708.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239824646|gb|EEQ96214.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 301 Score = 328 bits (842), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 156/298 (52%), Positives = 210/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KP+G+LR+ TT+ LG L ++EF+ LYPDI Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESKEKPTGRLRVTTTVGLGSGWLIERIQEFVELYPDI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCAIRLR+P Q LIQR+L T+HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLTMRHADCAIRLRQP-QQPDLIQRRLFTVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL R G RI LQVN+ LSI + G GIA Sbjct: 184 IDEIDQHRVVTFGEPAPSYLTGLNWLEIAGRTDGSSRIPALQVNNLLSIRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ KL AFR+F+F KAR+W + Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301 >gi|49475889|ref|YP_033930.1| LysR family transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238697|emb|CAF27948.1| Transcription regulator (lysr family) [Bartonella henselae str. Houston-1] Length = 301 Score = 327 bits (839), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 156/298 (52%), Positives = 210/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ A +GSFTHAA+ LHLSQS+ISRQ+S LE EVG+ LF RHARGL LTEQ Sbjct: 5 LDWDKLRVFHAAAEAGSFTHAAQMLHLSQSAISRQVSALEQEVGVSLFQRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R T +V KLE+ + +L ES KP+G LR+ +T +G L + EFL LYPD+ Sbjct: 65 GEILYRTTHDVLMKLESARSQLSESCEKPAGNLRVTSTFGMGAGWLVERMPEFLSLYPDM 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ D+K++D+ M YADCA+RL++P Q LIQ+KL TIHMH YA+ +Y+ N +P Sbjct: 125 RIQLLFDDKELDLMMRYADCAVRLQQP-QQPDLIQKKLFTIHMHVYASKNYIANYGKPEK 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + ELD H +I+FG+ +P + NWL + G R+S L++N+ +SI + GIA Sbjct: 184 LSELDNHRIISFGEPVPTYLSGLNWLEKAGKSDGALRLSILRINNIISIKNALMRDLGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDYIV ++ +LVR+ D++ PSF +FCYP ALKN KLKAFR++IF KAR W F Sbjct: 244 VLPDYIVDNDEHLVRLFPDMVDIPSFDTFFCYPYALKNLAKLKAFRDYIFSKARQWSF 301 >gi|319781967|ref|YP_004141443.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167855|gb|ADV11393.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 298 Score = 325 bits (833), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DWDKLRVF+ A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT Sbjct: 1 MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L R +V KLET + L E+ +PSG LR+ TT+ LG L ++EF+ LYP Sbjct: 61 EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I +QLIL N+++D++M ADCAIRLR+P Q LIQR+L T+H H YAAP Y+ P Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ EL H ++TFG +P + + NWL TV G R+ LQ+N LSI + G+G Sbjct: 180 SSVAELKAHRIVTFGVPVPSHLSELNWLETVGDFEGGQRVPTLQINDILSIKRAVQGGAG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDY++ + +LV+++ + PSF YF YP+A+KN KL FR+FI KAR W F Sbjct: 240 IAMLPDYVISKDSDLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298 >gi|13472303|ref|NP_103870.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023049|dbj|BAB49656.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 298 Score = 325 bits (832), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DWDKLRVF+ A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT Sbjct: 1 MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L R +V KLET + L E+ +PSG LR+ TT+ LG L ++EF+ LYP Sbjct: 61 EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I +QLIL N+++D++M ADCAIRLR+P Q LIQR+L T+H H YAAP Y+ +P Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ EL H ++TFG +P + + NWL TV G R+ LQ+N LSI + G+G Sbjct: 180 ASVSELRNHRIVTFGLPVPSHLSELNWLETVGDFEGGQRVPSLQINDILSIKRAVQGGAG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDY++ + LV+++ + PSF YF YP+A+KN KL FR+FI KAR W F Sbjct: 240 IAMLPDYVINKDSGLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298 >gi|260464011|ref|ZP_05812206.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259030182|gb|EEW31463.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 298 Score = 324 bits (831), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DWDKLRVF+ A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT Sbjct: 1 MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L R +V KLET + L E+ +PSG LR+ TT+ LG L ++EF+ LYP Sbjct: 61 EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I +QLIL N+++D++M ADCAIRLR+P Q LIQR+L T+H H YAAP Y+ +P Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ EL H ++TFG +P + + NWL TV G R+ LQ+N LSI + G+G Sbjct: 180 ASVAELRTHRIVTFGLPVPSHLSELNWLETVGDFEGGQRVPSLQINDILSIKRAVQGGAG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDY++ + LV+++ + PSF YF YP+A+KN KL FR+FI KAR W F Sbjct: 240 IAMLPDYVISKDSGLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298 >gi|319898516|ref|YP_004158609.1| transcriptional regulator, LysR family [Bartonella clarridgeiae 73] gi|319402480|emb|CBI76023.1| transcriptional regulator, LysR family [Bartonella clarridgeiae 73] Length = 301 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 153/300 (51%), Positives = 208/300 (69%), Gaps = 2/300 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + DWDKLRVF+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT Sbjct: 3 LPLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQDVGVPLFQRHARGLILT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+ ++ KLE +++L ES KP G LR+ +T +G L + EFL LYP Sbjct: 63 EQGEILYCTAHDILMKLENARLQLSESCQKPKGCLRVTSTFGMGAGWLAERMPEFLSLYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+QIQL+ D++++D++M YADCAIRLR+P Q LIQRKL T+HMH YA+ +Y+ N +P Sbjct: 123 DMQIQLLFDDEELDLTMRYADCAIRLRQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + ELD+H +I+FG+ +P + NWL R R+S LQ+N+ +SI + G Sbjct: 182 EKLSELDEHRIISFGEPVPPYLVGLNWLQKAGRSDDSVRVSMLQINNIISIKNALMRDLG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDYIV ++ L+R+ D+ PSF +FCY ALKN+ KL AFR++IFLKAR W F Sbjct: 242 IAVLPDYIVNNDEKLIRLFPDMSDIPSFDTFFCYSIALKNSAKLNAFRDYIFLKARKWSF 301 >gi|254503432|ref|ZP_05115583.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222439503|gb|EEE46182.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 302 Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 147/301 (48%), Positives = 206/301 (68%), Gaps = 3/301 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++ DWDKLR+F+ A++GSFTHA + LH+SQS++SRQ+S LE ++G+ LF+RHARGL LT Sbjct: 3 IAMDWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSALEHDLGVPLFHRHARGLLLT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLE Q L++S KPSG L++ TT+ LG L ++ F LYP Sbjct: 63 EQGELLYRTAGDVLMKLEAVQSRLKDSKDKPSGVLKVTTTVGLGSTWLASRIRSFTDLYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+++QLI DN ++D+SM AD AIRLR+P Q LIQRKL T+H H +A+P Y++ P Sbjct: 123 DVELQLIFDNDELDLSMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVFASPEYIQRFGSP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 SI+++D H +ITFG+ P + NWL T R G+PR S LQVN+ ++I + G+G Sbjct: 182 SSIEDIDDHRIITFGEQAPAYLRSMNWLVTAGRVDGKPRQSVLQVNNIIAIKRAVQTGAG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 IA+LPDYI+ + NLV ++ED PSF YF YP LKNT ++ AFR F+ A++W Sbjct: 242 IAMLPDYIIDNGRNLVPVLEDQEDKVPSFDTYFVYPSELKNTARVTAFREFLLKNAQNWV 301 Query: 299 F 299 + Sbjct: 302 Y 302 >gi|90418040|ref|ZP_01225952.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337712|gb|EAS51363.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 298 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 145/299 (48%), Positives = 205/299 (68%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DWDKLR+F+ A +GSFTHAA+ L+LSQS+ISRQ++ LE EVG LF+RHARGL L+ Sbjct: 1 MALDWDKLRIFHAAAEAGSFTHAADVLNLSQSAISRQVAALEQEVGTPLFHRHARGLVLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L S+V +LE +++L E+ KP+GKLR+ TT+ LG L KEFL LYP Sbjct: 61 EQGELLFHTASDVLKRLEQVRMQLTETREKPTGKLRVTTTVGLGSGWLTERAKEFLELYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++QL+ DN++ID++M AD AIRLR+P Q LIQR+L T+H+H YA+P YL P Sbjct: 121 ELELQLVFDNEEIDLTMRKADAAIRLRQP-QQPDLIQRRLFTVHLHVYASPAYLNRFGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++++LD H +ITFG+ P + + N L TV P G+ R LQ+N+ ++I G G Sbjct: 180 ETVEDLDNHRIITFGEPAPNYLRNLNTLETVGLPDGKSRSPILQINNLMAIRSAIESGIG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +ALLPDY++ LV+++ ++ P+F Y CYPE ++N KLK FR+F+ KAR W F Sbjct: 240 LALLPDYMIDKRVKLVQVLPEMEMPTFDTYLCYPEQMRNAAKLKVFRDFLISKARTWAF 298 >gi|114704991|ref|ZP_01437899.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Fulvimarina pelagi HTCC2506] gi|114539776|gb|EAU42896.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Fulvimarina pelagi HTCC2506] Length = 298 Score = 315 bits (806), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 146/299 (48%), Positives = 204/299 (68%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DWDKLR+F+ A +GSFT A+E L LSQS+ISRQ++ LE+EVG+ LF+RHARGL L+ Sbjct: 1 MALDWDKLRIFHAAAEAGSFTRASENLGLSQSAISRQVAALESEVGVPLFHRHARGLILS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L + ++V +LE +++L E+ +PSGKLR+ TT+ LG L KEFL LYP Sbjct: 61 EQGEMLFQTANDVLQRLEAVRMQLTETKERPSGKLRVTTTVGLGSGWLTERSKEFLELYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI++QL+ DN++ID++M AD AIRLR+P Q LIQR+L T+H+H YAAP Y+ P Sbjct: 121 DIELQLMFDNEEIDLTMRRADAAIRLRQP-QQPDLIQRRLFTVHLHVYAAPGYITRFGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +I +LD H +ITFG+ P + + N L TV G PR LQ+N+ ++I G G Sbjct: 180 ETIDDLDHHRIITFGEPAPPYLRNLNTLETVGIDNGHPRSPILQINNLIAIRSAIESGIG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + LLPDY++ LV+I+ ++ P+F Y CYPE L+N+ KL+ FR+F+ KAR W F Sbjct: 240 LGLLPDYMIDQRTKLVQILPEIEMPTFDTYLCYPEELRNSAKLRVFRDFLISKARTWTF 298 >gi|319405281|emb|CBI78895.1| transcriptional regulator, LysR family [Bartonella sp. AR 15-3] Length = 301 Score = 314 bits (805), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 150/300 (50%), Positives = 209/300 (69%), Gaps = 2/300 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + DW+KLRVF+ A +GSFTHAA++LHLSQS+ISRQ+S LE +V + LF RHARGL LT Sbjct: 3 LPLDWNKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSSLEQDVRVPLFQRHARGLILT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R ++ KLE T+++L ES KP+G LR+ +T +G L ++ EFL LY Sbjct: 63 EQGEILYRTAHDILMKLENTRLQLSESCEKPTGHLRVTSTFGIGAGWLVEHIPEFLSLYS 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+QIQL+ D++++D++M YADCAIRL +P Q LIQRKL T+HMH YA+ +Y+ N +P Sbjct: 123 DMQIQLLFDDEELDLTMRYADCAIRLHQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + ELD+H +I+FG+ +P + NWL + R+S LQ+N+ +SI + G Sbjct: 182 EKLSELDQHRIISFGEPVPPYLVGLNWLQRAGKSGDSVRVSILQINNIISIKNALMRDLG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDYIV ++ L+R+ D+ PSF +FCYP ALKN+ KL FR++IFLKAR W F Sbjct: 242 IAVLPDYIVNNDEKLMRLFPDMSDIPSFDTFFCYPIALKNSAKLNVFRDYIFLKARKWSF 301 >gi|304391324|ref|ZP_07373268.1| transcriptional regulator, LysR family [Ahrensia sp. R2A130] gi|303296680|gb|EFL91036.1| transcriptional regulator, LysR family [Ahrensia sp. R2A130] Length = 298 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 148/299 (49%), Positives = 203/299 (67%), Gaps = 1/299 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ VA +GSFT A+E L+LSQS+ISRQIS LE EVG+ LF RHARGL LT Sbjct: 1 MPMDWDKLRIFHKVANAGSFTRASEVLNLSQSAISRQISALEGEVGVPLFNRHARGLILT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L T + LE +EL + P G LR+ TT+ LG L + EFL YP Sbjct: 61 EQGEILFGATEGITGTLEKVHVELTDFKGTPQGPLRVTTTVGLGSAWLAIRMHEFLDSYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q++L+L+N ++D+ M ADCAIRL++P Q + +IQR+L T+H H YAAP+YL++ P Sbjct: 121 DMQVELMLENNELDLGMRQADCAIRLQQP-QQADIIQRRLFTVHFHVYAAPNYLESHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 I++LD H L+ +GD P + D NWL + P+G+ R L++NS L+I + V G+G Sbjct: 180 EKIEDLDNHRLVAWGDGTPAYLGDLNWLLSAGMPLGKLRTPALKINSILAIQRAAVRGAG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +ALLPDY V N LV++MEDV PSF YF Y L+ + +L+AFR+F+ KA++W+F Sbjct: 240 VALLPDYAVGVNSPLVKVMEDVEIPSFDTYFAYSSELRRSARLEAFRDFLLEKAKEWRF 298 >gi|240850166|ref|YP_002971559.1| transcription regulator, LysR family [Bartonella grahamii as4aup] gi|240267289|gb|ACS50877.1| transcription regulator, LysR family [Bartonella grahamii as4aup] Length = 301 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 151/298 (50%), Positives = 210/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ A +GSFTHAA++LHLSQS++SRQ+S LE EVG+ LF RHARGL LTEQ Sbjct: 5 LDWDKLRVFHAAAEAGSFTHAAQKLHLSQSAVSRQVSALEQEVGVSLFQRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE+ +++L ES KP+G LR+ +T +G + + EFL LYPD+ Sbjct: 65 GETLYRTAHDVLMKLESVRLQLSESYAKPTGHLRVTSTFGMGAGWIAERMPEFLSLYPDM 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QL+L ++++D++M +ADCA+RL +P Q LIQRKL TIHMH YA+ Y+ N +P Sbjct: 125 QVQLLLSDEELDLTMCHADCAVRLHQP-QQPDLIQRKLFTIHMHVYASEKYIANYGKPEK 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +LD+H +I+FG+ +P + NWL R G R+S LQ+N+ +SI + GIA Sbjct: 184 LSDLDEHRIISFGEPVPPYLSGLNWLEKAGRSDGSLRVSVLQINNIISIKNALMRDLGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDYIV ++ +LVR+ D++ PSF +FCYP LKN +L AFR++IFLKAR W F Sbjct: 244 VLPDYIVNNDEHLVRLFPDMVDIPSFDTFFCYPYNLKNLARLNAFRDYIFLKARQWSF 301 >gi|118591794|ref|ZP_01549189.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Stappia aggregata IAM 12614] gi|118435437|gb|EAV42083.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Stappia aggregata IAM 12614] Length = 298 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 148/299 (49%), Positives = 196/299 (65%), Gaps = 3/299 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A++GSFTHA + LH+SQS++SRQ+S LE ++G+ LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSALEHDLGVPLFHRHARGLLLTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R ++V KLE Q L +S KPSG LR+ TT+ LG L ++ F+ LYPD+ Sbjct: 61 GELLYRTANDVLMKLEAVQSSLTDSKEKPSGALRVTTTVGLGSTWLTSRIRSFIDLYPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + LI D+ ++D+ M AD AIRLR+P Q LIQRKL T+H H YAAP YL+ P++ Sbjct: 121 DLHLIFDDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVYAAPEYLQRFGTPVT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I +LDKH LITFG+ P + NWL T R PR S L+ N+ ++I + G GIA Sbjct: 180 IDDLDKHRLITFGEQAPAYLRSMNWLETAGRVATSPRRSVLKANNIVAIKRAVQSGVGIA 239 Query: 243 LLPDYIVKDNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDYI+ + NLV +M D PSF YF YP LKNT ++ AFR F+ A W F Sbjct: 240 ILPDYIIDKSSNLVPVMTDQEDKVPSFDTYFVYPSELKNTARVTAFREFLLANAEGWVF 298 >gi|163867959|ref|YP_001609163.1| LysR family transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161017610|emb|CAK01168.1| transcriptional regulator, LysR family [Bartonella tribocorum CIP 105476] Length = 301 Score = 311 bits (796), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 150/298 (50%), Positives = 210/298 (70%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ A +GSFTHAA++LHLSQS++SRQ+S LE EVG+ LF RHARGL LT+Q Sbjct: 5 LDWDKLRVFHAAAEAGSFTHAAQKLHLSQSAVSRQVSALEQEVGVSLFQRHARGLILTQQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE+ +++L ES KP+G LR+ +T +G + + EFL LYPD+ Sbjct: 65 GETLYRTAHDVLMKLESVRLQLSESYAKPTGHLRVTSTFGMGAGWIAERMPEFLSLYPDM 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QL+L ++++D++M +ADCA+RL +P Q LIQRKL TIHMH YA+ Y+ N +P Sbjct: 125 QVQLLLSDEELDLTMCHADCAVRLHQP-QQPDLIQRKLFTIHMHVYASEKYIANYGKPEK 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +LD+H +I+FG+ +P + NWL R G R+S LQ+N+ +SI + GIA Sbjct: 184 LSDLDEHRIISFGEPVPPYLSGLNWLEKAGRNDGSLRVSVLQINNIISIKNALMRDLGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDYIV ++ +LVR+ D++ PSF +FCYP LKN +L AFR++IFLKAR W F Sbjct: 244 VLPDYIVNNDEHLVRLFPDMVDIPSFDTFFCYPYNLKNLARLNAFRDYIFLKARQWSF 301 >gi|319403842|emb|CBI77428.1| transcriptional regulator, LysR family [Bartonella rochalimae ATCC BAA-1498] gi|319406853|emb|CBI80488.1| transcriptional regulator, LysR family [Bartonella sp. 1-1C] Length = 301 Score = 308 bits (789), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 153/300 (51%), Positives = 212/300 (70%), Gaps = 2/300 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + DW+KLRVF+ A +GSFTHAA++LHLSQS+ISRQ+S LE +V + LF RHARGL LT Sbjct: 3 LPLDWNKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQDVRVPLFQRHARGLILT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R ++ KLE T+++L ES KP+G LR+ +T +G L ++ EFL LYP Sbjct: 63 EQGEILYRTAHDILMKLENTRLQLSESREKPTGHLRVTSTFGMGTGWLAEHIPEFLNLYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+QIQL+LD++++D++M YADCAIRLR+P Q LIQRKL T+HMH YA+ +Y+ N +P Sbjct: 123 DMQIQLLLDDEELDLTMRYADCAIRLRQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + ELD+H +I+FG+ +P + NWL + R+S LQ+N+ +SI + G Sbjct: 182 EKLSELDEHRIISFGEPVPPYLVGLNWLQRAGKSDDSVRVSILQINNIVSIKNALMRDLG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IA+LPDYIV ++ L+R+ D+I PSF +FCY ALKN+ KL FR++IFLKAR W F Sbjct: 242 IAVLPDYIVNNDEKLIRLFPDMIDIPSFDTFFCYSAALKNSAKLNVFRDYIFLKARKWSF 301 >gi|121602215|ref|YP_989259.1| LysR family transcriptional regulator [Bartonella bacilliformis KC583] gi|120614392|gb|ABM44993.1| transcriptional regulator, LysR family [Bartonella bacilliformis KC583] Length = 301 Score = 308 bits (788), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 148/298 (49%), Positives = 201/298 (67%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ A +GSFTHAA++LHLSQS+ISRQ++ LE +VG LF RHARGL LTEQ Sbjct: 5 LDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVAALEQDVGAPLFQRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KP+G+LR+ +T +G + + EFL LYPD+ Sbjct: 65 GEILYRTAHDVLIKLENARSQLTESREKPAGRLRVTSTFGMGAKWIAECMPEFLNLYPDM 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQ++LD+K +D++M ADCAIRL +P Q LIQRKL T+HMH YA+ Y+ +P Sbjct: 125 RIQILLDDKALDLTMRDADCAIRLHQP-QQPDLIQRKLFTVHMHVYASEDYIARYGKPEE 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +LD H +I+FG+ +P + NWL R R LQ+N+ LSI + GIA Sbjct: 184 LSDLDGHRIISFGETVPPYLSGLNWLERAGRSNCSLRTPVLQINNILSIKNALMGNLGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDYIV ++ VR+ D+ PSF +FCYP+AL+N+ KL FR++IFLKAR W F Sbjct: 244 VLPDYIVNNDEKFVRLFPDMTDIPSFDTFFCYPDALRNSAKLNVFRDYIFLKARKWSF 301 >gi|328542874|ref|YP_004302983.1| LysR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326412620|gb|ADZ69683.1| LysR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 298 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 145/300 (48%), Positives = 205/300 (68%), Gaps = 5/300 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A++GSFTHA + L++SQS++SRQ+S LE ++G+ LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAAAQAGSFTHAGDSLNMSQSAVSRQVSALEQDLGVPLFHRHARGLLLTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R EV KLE + L ++ KPSG LR+ TT+ LG L + EF+ LYP++ Sbjct: 61 GELLYRTAREVLMKLEAVRTRLTDTREKPSGVLRVTTTVGLGSTWLTSRINEFIDLYPEM 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++LI D+ ++D+SM AD AIRLR+P Q LIQRKL T+H H YA+P YL+ P S Sbjct: 121 ELRLIFDDDELDLSMREADAAIRLRQPTQ-PDLIQRKLFTVHFHLYASPQYLQRYGTPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I++LD+H ++TFG+ P + D NWL T R +PR L+VN+ ++I + G GIA Sbjct: 180 IEDLDEHRIVTFGEHAPVYLRDMNWLETAGRSPADPRRCVLRVNNVVAIKRAVQRGVGIA 239 Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDYI++++ LV + +ED I PSF YF YP LKNT ++ AFR+F+ KA W + Sbjct: 240 ILPDYIIENDSALVPLLAELEDKI-PSFDTYFVYPSELKNTARITAFRDFLLAKAERWSY 298 >gi|254702216|ref|ZP_05164044.1| hypothetical protein Bsuib55_15351 [Brucella suis bv. 5 str. 513] gi|261752789|ref|ZP_05996498.1| LysR family transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261742542|gb|EEY30468.1| LysR family transcriptional regulator [Brucella suis bv. 5 str. 513] Length = 282 Score = 305 bits (780), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 144/279 (51%), Positives = 196/279 (70%), Gaps = 2/279 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KPSG+LR+ TT+ LG L ++EF+ LYPD+ Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCA+RLR+P Q LIQR+L +HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL T RP G RI LQVN+ LS+ + G GIA Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNT 280 +LPDY+ LV+++ ++ PSF +FCYPEALKN+ Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNS 282 >gi|256160226|ref|ZP_05457920.1| hypothetical protein BcetM4_14551 [Brucella ceti M490/95/1] gi|256255432|ref|ZP_05460968.1| hypothetical protein BcetB_14323 [Brucella ceti B1/94] gi|261222636|ref|ZP_05936917.1| LysR family transcriptional regulator [Brucella ceti B1/94] gi|265998601|ref|ZP_06111158.1| LysR family transcriptional regulator [Brucella ceti M490/95/1] gi|260921220|gb|EEX87873.1| LysR family transcriptional regulator [Brucella ceti B1/94] gi|262553225|gb|EEZ09059.1| LysR family transcriptional regulator [Brucella ceti M490/95/1] Length = 279 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 142/276 (51%), Positives = 193/276 (69%), Gaps = 2/276 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ Sbjct: 5 LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KLE + +L ES KPSG+LR+ TT+ LG L ++EF+ LYPD+ Sbjct: 65 GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+QLILDN+++D++M +ADCA+RLR+P Q LIQR+L +HMH YA+ Y+ + S Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I E+D+H ++TFG+ P + NWL T RP G RI LQVN+ LS+ + G GIA Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEAL 277 +LPDY+ LV+++ ++ PSF +FCYPEAL Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEAL 279 >gi|307944265|ref|ZP_07659606.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307772611|gb|EFO31831.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 298 Score = 298 bits (762), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 147/298 (49%), Positives = 199/298 (66%), Gaps = 3/298 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKLR+F+ A++GSFTHA + LH+SQS++SRQ+SGLE ++G+ LF+RHARGL LTEQG Sbjct: 2 DWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSGLEHDLGVPLFHRHARGLLLTEQG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L+R +V KLE Q L +S KPSG LR+ TT+ LG L + EF+ LYP+++ Sbjct: 62 ELLYRTARDVLMKLEAVQGRLTDSKEKPSGVLRVTTTVGLGSTWLTSRISEFVDLYPEVE 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+ D+ ++D+ M AD AIRLR+P Q LIQRKL T+H H +A+P YL P S Sbjct: 122 LQLLFDDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVFASPDYLSRFGAPEST 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++LD H LITFG+ P + NWL T R G+PR L++N+ L+I + G GIA+ Sbjct: 181 EDLDNHRLITFGEQAPSFLRGMNWLQTAGRAPGDPRSPILRINNLLAIRRAVQSGIGIAM 240 Query: 244 LPDYIVKDNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LPDYIV+ P L R++ D+ PSF YF YP LKNT ++ AFR F+ A W+F Sbjct: 241 LPDYIVERAPELKRVLSDIEEKVPSFDTYFVYPSELKNTARITAFREFLLSNAEKWEF 298 >gi|312114882|ref|YP_004012478.1| LysR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311220011|gb|ADP71379.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii ATCC 17100] Length = 296 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 137/296 (46%), Positives = 203/296 (68%), Gaps = 1/296 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKLR+F+ A++GSFTHA E L +SQS++SR I+ LE ++ + LF+RHARGL LTEQG Sbjct: 2 DWDKLRIFHAAAQAGSFTHAGETLAISQSAVSRHIASLERDLNVPLFHRHARGLVLTEQG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L+R EV+ KL TTQI L +S KP+G+L++ TT+ LG L L EF+ LYPDIQ Sbjct: 62 ELLYRTAQEVFSKLATTQILLADSRGKPNGQLKVTTTMALGTGWLTPRLNEFMKLYPDIQ 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QLILD++ ++++M AD AI P Q L++RKL T+H H YA+ Y+K P ++ Sbjct: 122 LQLILDDETLNLTMREADVAIWFGPPSQ-QDLVRRKLFTVHFHVYASVEYVKRNGRPRNL 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++LD+H ++T+G ++P ++ NWL T R + R +++NS L++ + + G GIA+ Sbjct: 181 EDLDRHRILTYGGVLPSPFKEMNWLETAGRDGRDLRDPSVRINSLLALREAVLQGVGIAV 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LPDY+ KD+P LV ++E+ P F YF YP LK+T ++ AFR+F+ K+R+W F Sbjct: 241 LPDYLAKDHPRLVNVLEEAEMPVFDTYFVYPADLKDTKRVNAFRDFLVEKSREWSF 296 >gi|158422773|ref|YP_001524065.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329662|dbj|BAF87147.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 296 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/297 (46%), Positives = 199/297 (67%), Gaps = 1/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 1 MDWDKLKVFHVAAEAGSFTHAGETLGLSQSAVSRQVSALEQELKVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R EV+ KLE+ + +L +S KP+G+LR+ TT+ LG + L + EF+ LYPDI Sbjct: 61 GELLYRTAHEVFLKLESARAQLTDSREKPNGELRVTTTVGLGTHWLTARVGEFVELYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQLIL ++++D++M AD AIR+R+P+Q L+QRKL T+H HAYA+ YLK +P + Sbjct: 121 RIQLILTDEELDLAMREADVAIRMRQPVQ-PDLVQRKLFTVHFHAYASVDYLKRHGQPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++ELDKH ++ G IP + NWL R PR+ +VNS L + + G GI Sbjct: 180 LEELDKHRILLLGGPIPSYFQGLNWLEHAGRDGSTPRVPAFEVNSVLGLKRAVERGVGIG 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LPDY+ D+ +LV++ D TP YF Y + +++ +++ FR+F+ KA+ W + Sbjct: 240 TLPDYLSDDSSSLVQLFTDRETPQLEAYFTYAQEMRSVARIQVFRDFLISKAQRWSY 296 >gi|154246693|ref|YP_001417651.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160778|gb|ABS67994.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 296 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 138/296 (46%), Positives = 197/296 (66%), Gaps = 1/296 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LETE+ + LF+RHARGL LTEQG Sbjct: 2 DWDKLKVFHVAAEAGSFTHAGETLGLSQSAVSRQVSALETELKVPLFHRHARGLILTEQG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L+R EV+ KLE+ + +L +S KP+G+LR+ TT+ LG + L + EF+ L+PDI+ Sbjct: 62 ELLYRTAHEVFLKLESARAQLTDSREKPNGELRVTTTVGLGTHWLTARVGEFVELFPDIR 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 IQLIL ++++D++M AD AIR+R+P+Q L+QR+L T+H HAYA+ YLK P SI Sbjct: 122 IQLILTDEELDLAMREADVAIRMRQPVQ-PDLVQRRLFTVHFHAYASADYLKRHGHPRSI 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ELDKH ++ G IP + NWL R PR+ +VNS L + + G GI Sbjct: 181 DELDKHRILLLGGPIPPYFQGLNWLEHAGRDGSTPRVPAFEVNSVLGLKRAVERGVGIGT 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LPDY+ D +LV++ D TP YF Y + +++ +++ FR+F+ KA+ W + Sbjct: 241 LPDYLSDDASSLVQLFTDRETPKLEAYFTYAQEMRSVARIQVFRDFLISKAQRWNY 296 >gi|298292339|ref|YP_003694278.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296928850|gb|ADH89659.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 307 Score = 295 bits (755), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 139/298 (46%), Positives = 200/298 (67%), Gaps = 2/298 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LE E+ I LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHVAAEAGSFTHAGEALGLSQSAVSRQVSALEQELNIPLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R EV+ KLE + +L +S KP+G+LR+ TT+ LG + L + EFL LYPDI Sbjct: 71 GDLLYRTAHEVFMKLEAARAKLTDSREKPNGELRVTTTMGLGTHWLTARIGEFLELYPDI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LIL + ++D++M AD AIRLR+P+Q LIQRKL T+H HA+A+ YLK P + Sbjct: 131 RITLILTDDELDLAMREADVAIRLRQPVQ-PDLIQRKLFTVHFHAFASAEYLKRNGHPRT 189 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGI 241 ++ELD+H +I G IP +D NWL G+ R+ L VN+ L + + G GI Sbjct: 190 LEELDQHRIILLGGPIPSYFQDLNWLERAGVEDGQDGRVPSLSVNNVLGLKRAVERGVGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 ++PDY+++D+ LV++ + TP+ YF YP+ +++ +++ FR+F+ KA+ W F Sbjct: 250 GIVPDYLLEDSATLVQLFPERTTPTLEAYFVYPQEMRSVARIQVFRDFLVAKAQRWSF 307 >gi|254470526|ref|ZP_05083930.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211960837|gb|EEA96033.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 303 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 144/300 (48%), Positives = 195/300 (65%), Gaps = 7/300 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DWDKLR+F+ A++GSFTHA E L++SQS++SRQ+S LE E+G+ LF+RHARGL TE Sbjct: 5 SLDWDKLRIFHAAAQAGSFTHAGEALNMSQSAVSRQVSALEAELGVPLFHRHARGLIPTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG L+R EV KLET Q L ++ KPSG LR+ TT+ LG L + EF+ LYPD Sbjct: 65 QGELLYRTAREVLLKLETVQSRLTDTKEKPSGTLRVTTTVGLGSTWLTARVNEFVDLYPD 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++++I + ++D+ M AD AIRLR+P Q LIQRKL T+H H YA+P Y++ P Sbjct: 125 MRLEIICMDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVYASPKYIERYGSPS 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +I +LD H LIT GD + + NWLAT P GE R L+VN+ I + G GI Sbjct: 184 TIDDLDHHRLITIGDNMASYLRAMNWLATAGLPNGERRDVSLRVNNLSGIKKAVQTGVGI 243 Query: 242 ALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A+LPDY+V+ + R+M E++ PSF YF YP LKNT ++ AFR+F+ A W Sbjct: 244 AILPDYMVEPGAGIKRVMSVTQEEL--PSFDTYFVYPSELKNTARVTAFRDFLVSYAERW 301 >gi|163761170|ref|ZP_02168247.1| putative LysR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162281721|gb|EDQ32015.1| putative LysR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 246 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 130/246 (52%), Positives = 177/246 (71%), Gaps = 1/246 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + DWDKLR+F+ A +GSFTHAAE+LHLSQS+ISRQ+S LE ++G KLF+RHARGL L+ Sbjct: 2 VPLDWDKLRIFHAAAEAGSFTHAAEKLHLSQSAISRQVSSLEMDIGAKLFHRHARGLILS 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L++ EV KLE + +L E+ +PSGKLR+ TT+ LGQ L ++EF LYP Sbjct: 62 EQGEILYQTAHEVLMKLEAVKNQLTETRERPSGKLRVTTTVGLGQAWLTEKVQEFQALYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+QL+LDN+++D++M ADCAIRLR+P Q LIQR++ T+H H YAAP YL EP Sbjct: 122 DVQVQLLLDNEELDVNMRQADCAIRLRQP-QQPDLIQRRMFTVHFHIYAAPSYLARHGEP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++++LD H +ITFG+ P + D NWL R PRI+ LQVN+ +I + + G+G Sbjct: 181 KTLEDLDNHRIITFGEPAPNYLRDVNWLEQAGRTPDNPRIAQLQVNNLPAIRRATINGAG 240 Query: 241 IALLPD 246 I+LLPD Sbjct: 241 ISLLPD 246 >gi|115525960|ref|YP_782871.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519907|gb|ABJ07891.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisA53] Length = 307 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 139/296 (46%), Positives = 194/296 (65%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L+I TT LG + L L EF LYP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL +I HAY +P Y+K+ P + Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPRT 189 Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ELD H LI GD IP +++ NWL R PR +VN+ L +++ C G GI Sbjct: 190 LEELDNHRLIVLGDTQIPPHLQNRNWLIDAGRNGAGPREPYFKVNNILGVIRACQQGLGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+V++N LV++ + + YF YPE LK+ +++ FR+FI KA+ W Sbjct: 250 AALPDYLVEENNKLVQLFGEADSIQLDTYFVYPEELKSVARVQVFRDFIVSKAQRW 305 >gi|90425322|ref|YP_533692.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107336|gb|ABD89373.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 307 Score = 278 bits (710), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 137/296 (46%), Positives = 194/296 (65%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L++ TT LG + L L EF LYP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL +I HAY AP Y+K+ P + Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCAPEYIKHFGTPRT 189 Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ELD H LI GD +P +++ NWL R PR +VN+ L +++ C G GI Sbjct: 190 LEELDNHRLIILGDTQVPPYLQNRNWLIDAGRNGAGPREPYFKVNNILGVIRACQQGLGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+V++N LV++ + + YF YPE LK+ +++ FR+F+ KA+ W Sbjct: 250 AALPDYLVEENNRLVQLFGEQDSIQLDTYFVYPEELKSVARVQVFRDFVVSKAQRW 305 >gi|220925657|ref|YP_002500959.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950264|gb|ACL60656.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 296 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 193/297 (64%), Gaps = 1/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDK+R+F VA +GSFT A + + LSQS++SRQIS LE E+ LF+RHARGL LTEQ Sbjct: 1 MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R ++ +LETT+ L E+S +PSG L++ TT+ LG L + EFL L+P++ Sbjct: 61 GDLLFRAARDMKMRLETTRARLVETSERPSGDLKVTTTVGLGTAWLSQRVSEFLDLHPEV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+LIL ++++D++M AD AIRLR+P Q LIQR+L T+H H +A+ Y+K EP S Sbjct: 121 RIELILTSEELDLAMREADVAIRLRRPAQ-PDLIQRRLFTVHYHVFASTEYIKRFGEPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I +LD+H +++FG P + +WL+T R EPR VN+ ++ G+GI Sbjct: 180 IDDLDRHRIVSFGGDQPSYLMATHWLSTAGREGREPRTVHFTVNNISALQVAVETGAGIG 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY NP LV+++ D+ P+ Y Y E +++ +++AFR+F+ KA+ W + Sbjct: 240 ILPDYAANGNPQLVQVLRDIEMPNLESYLVYAEEMRSVARVQAFRDFLVAKAQRWTY 296 >gi|170741949|ref|YP_001770604.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196223|gb|ACA18170.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 296 Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 130/297 (43%), Positives = 193/297 (64%), Gaps = 1/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDK+R+F VA +GSFT A + + LSQS++SRQIS LE E+ LF+RHARGL LTEQ Sbjct: 1 MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R ++ +LETT+ L E+S +PSG L++ TT+ LG L + EFL L+P++ Sbjct: 61 GDLLFRAARDMKMRLETTRARLVETSERPSGDLKVTTTVGLGTAWLSQRVSEFLDLHPEV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+LIL N+++D++M AD AIRLR+P Q LIQR+L T+H H +A+ Y+K EP S Sbjct: 121 RIELILTNEELDLAMREADVAIRLRRPAQ-PDLIQRRLFTVHYHVFASLEYIKRFGEPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I++LDKH +++FG P + +WL+T R EPR VN+ ++ G+GI Sbjct: 180 IEDLDKHRIVSFGGDQPSYLMATHWLSTAGREGREPRNVHFTVNNISALQVAVETGAGIG 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY NP L +++ D+ P+ Y Y E +++ +++AFR+F+ KA+ W + Sbjct: 240 ILPDYAANGNPLLQQVLRDIEMPNLESYLVYAEEMRSVARVQAFRDFLVAKAQRWTY 296 >gi|170746996|ref|YP_001753256.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653518|gb|ACB22573.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 296 Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 131/297 (44%), Positives = 193/297 (64%), Gaps = 1/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDK+R+F VA +GSFT A + + LSQS++SRQIS LE E+ LF+RHARGL LTEQ Sbjct: 1 MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLLLTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R ++ +LE T+ L E+S +P+G L++ TT+ LG + L + EFL LYPD+ Sbjct: 61 GDLLFRAARDMKLRLENTRARLVETSERPTGDLKVTTTVGLGTSWLSQRVGEFLDLYPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+LIL N+++D++M AD AIR+R+P Q LIQR+L T+H HA+A+P Y+K EP + Sbjct: 121 RIELILTNEELDLAMREADVAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I+ELD H L++FG P + +WLA R E R L VN+ ++ + G+GI Sbjct: 180 IEELDDHRLVSFGGNEPSYLLAAHWLADAGREGRERRQVHLTVNNIGALQRAMEAGAGIG 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY V LV+++ + PS Y Y E +++ +++AFR+F+ KA+ W + Sbjct: 240 ILPDYAVDGGQQLVQVLRETEMPSLESYLVYAEEMRSVARVQAFRDFLVSKAQRWTY 296 >gi|91975931|ref|YP_568590.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91682387|gb|ABE38689.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB5] Length = 297 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 135/296 (45%), Positives = 193/296 (65%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 1 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L+I TT LG + L L EF LYP+I Sbjct: 61 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL +I HAY +P Y+K+ P + Sbjct: 121 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPRT 179 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ELD H LI D +P+ +++ +WL R PR +VN+ L +++ C G GI Sbjct: 180 LEELDNHRLIMLSDSQVPQHLQNRSWLVDAGRNGSGPREPYFKVNNILGLVRACQQGLGI 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+V+D LV++ + + YF YPE LK+ +++ FR+F+ KA+ W Sbjct: 240 AALPDYLVEDPNRLVQLFGEEDSIQLDTYFVYPEELKSVARVQVFRDFVVNKAQRW 295 >gi|146338405|ref|YP_001203453.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191211|emb|CAL75216.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 307 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 133/296 (44%), Positives = 189/296 (63%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELAVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L+I TT +G N L L EF +YP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTAMYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL I HAY +P Y+K P + Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAISFHAYCSPEYVKRFGTPRT 189 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + ELD H +I D + +++ NWL R PR + +VN+ L +++ C G GI Sbjct: 190 LDELDDHRIIMLADGQVAPHLQNRNWLVDAGRNGSGPREAYFKVNNILGLVRACQQGLGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+V++N LV++ + + YF YPE LK +++ FR+F+ KA+ W Sbjct: 250 AALPDYLVEENSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 305 >gi|316935641|ref|YP_004110623.1| LysR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603355|gb|ADU45890.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris DX-1] Length = 307 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 134/296 (45%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L++ TT LG + L L EF LYP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL +I HAY +P Y+KN P + Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPRT 189 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ELD H LI D +P +++ +WL R PR +VN+ L +++ C G GI Sbjct: 190 LEELDDHRLIMLSDSQVPPHLQNRSWLIEAGRNGVGPREPYFKVNNILGLVRACQQGLGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+++D LV++ + + YF YPE LK +++ FR+F+ KA+ W Sbjct: 250 AALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305 >gi|86748636|ref|YP_485132.1| LysR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571664|gb|ABD06221.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris HaA2] Length = 307 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 135/296 (45%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L+I TT LG + L L EF LYP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL +I HAY +P Y+K+ P + Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPRT 189 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ELD H LI D +P +++ +WL R PR +VN+ L +++ C G GI Sbjct: 190 LEELDNHRLIMLSDSQVPPHLQNRSWLVDAGRNGSGPREPYFKVNNILGLVRACQQGLGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+V+D LV++ + + YF YPE LK +++ FR+F+ KA+ W Sbjct: 250 AALPDYLVEDPNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305 >gi|39937136|ref|NP_949412.1| LysR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39650994|emb|CAE29517.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris CGA009] Length = 307 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 133/296 (44%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L++ TT LG + L L EF LYP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL +I HAY +P Y+KN P + Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPRT 189 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++LD H LI D +P +++ +WL R PR +VN+ L +++ C G GI Sbjct: 190 LEDLDNHRLIMLSDSQVPPHLQNRSWLIEAGRSGMGPREPYFKVNNILGLVRACQQGLGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+++D LV++ + + YF YPE LK +++ FR+F+ KA+ W Sbjct: 250 AALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305 >gi|163850525|ref|YP_001638568.1| LysR substrate-binding [Methylobacterium extorquens PA1] gi|218529222|ref|YP_002420038.1| LysR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137590|ref|YP_002962061.1| putative transcriptional regulator, LysR family [Methylobacterium extorquens AM1] gi|254560062|ref|YP_003067157.1| LysR family transcriptional regulator [Methylobacterium extorquens DM4] gi|163662130|gb|ABY29497.1| LysR substrate-binding [Methylobacterium extorquens PA1] gi|218521525|gb|ACK82110.1| transcriptional regulator, LysR family [Methylobacterium chloromethanicum CM4] gi|240007558|gb|ACS38784.1| putative transcriptional regulator, LysR family [Methylobacterium extorquens AM1] gi|254267340|emb|CAX23172.1| putative transcriptional regulator, LysR family [Methylobacterium extorquens DM4] Length = 296 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 195/297 (65%), Gaps = 1/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDK+R+F VA +GSFT A + + LSQS++SRQIS LE E+ LF+RHARGL LTEQ Sbjct: 1 MDWDKIRIFLNVAEAGSFTRAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R ++ +LE T+ L E+S +PSG LR+ TT+ LG + L + EFL LYPD+ Sbjct: 61 GDLLFRAARDMKLRLENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L+L N+++D++M AD AIR+R+P Q LIQR+L T+H HA+A+P Y+K EP + Sbjct: 121 RIELVLTNEELDLAMREADIAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I +LD+H L++FG P + ++LA++ R E R VN+ ++ + G G+ Sbjct: 180 ISDLDEHRLVSFGGNEPSYLLATHYLASIGREGDERRPVHFTVNNITALHKAMEAGVGVG 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY V N +LV+++ + P+ Y Y E +++ +++AFR+F+ KA+ W + Sbjct: 240 ILPDYAVDGNESLVQVLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 296 >gi|192292971|ref|YP_001993576.1| LysR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192286720|gb|ACF03101.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris TIE-1] Length = 307 Score = 268 bits (686), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 133/296 (44%), Positives = 191/296 (64%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L++ TT LG + L L EF LYP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL +I HAY +P Y+KN P + Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPRT 189 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++LD H LI D +P +++ +WL R PR +VN+ L +++ C G GI Sbjct: 190 LEDLDNHRLIMLSDSQVPPHLQNRSWLIEAGRNGMGPREPYFKVNNILGLVRACQQGLGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+++D LV++ + + YF YPE LK +++ FR+F+ KA+ W Sbjct: 250 AALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305 >gi|27382492|ref|NP_774021.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355664|dbj|BAC52646.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 297 Score = 268 bits (685), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 132/295 (44%), Positives = 189/295 (64%), Gaps = 2/295 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQG Sbjct: 2 DWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L R +V+ +L+ + +L +S +PSG L+I TT +G N L L EF LYP+I+ Sbjct: 62 DLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTALYPEIR 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I LI+ ++++D+SM AD AIR RKP Q LIQRKL + HAY +P Y+K P ++ Sbjct: 122 ISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAMGFHAYCSPDYIKRFGTPRTL 180 Query: 184 QELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +ELD H +IT D +++ NWL R PR + +VN+ L +++ C G GIA Sbjct: 181 EELDSHRIITLSDGTFAPHLQNRNWLVEAGRNGSGPREAYFRVNNILGLVRACQQGLGIA 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LPDY++++ LV++ + + YF YPE LK +++ FR+F+ KA+ W Sbjct: 241 ALPDYLIEEQSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 295 >gi|148258015|ref|YP_001242600.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410188|gb|ABQ38694.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 307 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/296 (44%), Positives = 189/296 (63%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELAVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG L+I TT +G N L L EF LYP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTSLYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI+ ++++D+SM AD AIR RKP Q LIQRKL I HAY +P Y+K P + Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAISFHAYCSPEYVKRFGTPRT 189 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + ELD H +I D + +++ +WL R PR + +VN+ L +++ C G GI Sbjct: 190 LDELDDHRIIMLADGQVAPHLQNRSWLVDAGRNGSGPREAYFRVNNILGLVRACQQGLGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+V++N LV++ + + YF YPE LK +++ FR+F+ KA+ W Sbjct: 250 AALPDYLVEENSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 305 >gi|188580293|ref|YP_001923738.1| LysR family transcriptional regulator [Methylobacterium populi BJ001] gi|179343791|gb|ACB79203.1| transcriptional regulator, LysR family [Methylobacterium populi BJ001] Length = 296 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 195/297 (65%), Gaps = 1/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDK+R+F VA +GSFT A + + LSQS++SRQIS LE E+ LF+RHARGL LTEQ Sbjct: 1 MDWDKIRIFLNVAEAGSFTRAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R ++ +LE T+ L E+S +PSG LR+ TT+ LG + L + EFL LYPD+ Sbjct: 61 GDLLFRAARDMKLRLENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L+L N+++D++M AD AIR+R+P Q LIQR+L T+H HA+A+P Y+K EP + Sbjct: 121 RIELVLTNEELDLAMREADIAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I +LD+H L++FG P + ++LA++ R + R VN+ ++ + G G+ Sbjct: 180 IADLDEHRLVSFGGNEPSYLLATHYLASIGREGDDRRPVHFTVNNIAALHKAMEAGIGVG 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY V N +LV+++ + P+ Y Y E +++ +++AFR+F+ KA+ W + Sbjct: 240 ILPDYAVDGNESLVQVLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 296 >gi|218670472|ref|ZP_03520143.1| probable transcriptional regulator protein, LysR family [Rhizobium etli GR56] Length = 237 Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 126/238 (52%), Positives = 165/238 (69%), Gaps = 1/238 (0%) Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG L+R +V KLET +++L E++ PSGKLR+ TT+ LGQ L ++EFL LYPD Sbjct: 1 QGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYPD 60 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP Sbjct: 61 VQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEPQ 119 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I++LD H +ITFG+ P + D NWL R RI LQ+NS SI + C+LG G+ Sbjct: 120 KIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIGV 179 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 A LPDYIV +P L+++ + PSF YFCYP+ +KN KLKAFR+FI KAR+W F Sbjct: 180 ACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 237 >gi|92118380|ref|YP_578109.1| LysR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801274|gb|ABE63649.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis X14] Length = 307 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 133/295 (45%), Positives = 185/295 (62%), Gaps = 2/295 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+ LE E+ + LF+RHARGL LTEQG Sbjct: 12 DWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVALFHRHARGLILTEQG 71 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L R T EV+ +L+ + +L +S +PSG LR+ TT +G N L L EF LYP+I+ Sbjct: 72 DLLFRTTHEVFIQLQAARAKLTDSRERPSGDLRVTTTPGIGINWLIPRLGEFTALYPEIR 131 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LIL ++++D+SM AD AIR KP Q LIQRKL + HAY + Y+K+ P ++ Sbjct: 132 VSLILTDEELDLSMREADIAIRTHKPTQ-PDLIQRKLFAMGFHAYCSTEYVKHFGTPRAL 190 Query: 184 QELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +ELD H +I D +++ NWL R PR VN+ L + C G GIA Sbjct: 191 EELDGHRIILLTDTYASAHLQNRNWLIGAGRNGTGPREPYFTVNNILGLFSACKQGLGIA 250 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LPDY+V +N LV++ + + YF YPE LK+ +++AFR+F+ KA+ W Sbjct: 251 ALPDYLVGENNRLVQLFSESDSIQLDTYFVYPEELKSVARIQAFRDFVVSKAQRW 305 >gi|209884266|ref|YP_002288123.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] gi|209872462|gb|ACI92258.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] Length = 297 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 131/296 (44%), Positives = 188/296 (63%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 1 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG+L++ T+ LG N L L EF LYP+I Sbjct: 61 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGELKVTTSPGLGINWLVPRLTEFTSLYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++++D+SM AD A+R RKP Q LIQRKL +I HAY +P Y K P + Sbjct: 121 RLSLTLTDEELDLSMREADVALRTRKPTQ-PDLIQRKLFSIGFHAYCSPDYAKKFGTPRT 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++LD H LI ++P +++ NWL R PR +VN+ L +++ C G GI Sbjct: 180 LEDLDNHRLIVLNAQILPPHLQNRNWLIEAGRNGSGPREPFFKVNNVLGLVRACQQGIGI 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY+V + LV++ + + YF YPE LK +++ FR+FI KA+ W Sbjct: 240 AALPDYLVDETNRLVQLFGEDDSIQLDAYFVYPEELKAVARVQVFRDFIVSKAQRW 295 >gi|299132022|ref|ZP_07025217.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2] gi|298592159|gb|EFI52359.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2] Length = 307 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 130/296 (43%), Positives = 188/296 (63%), Gaps = 2/296 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ Sbjct: 11 MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R +V+ +L+ + +L +S +PSG+L++ T+ LG N L L EF LYP+I Sbjct: 71 GDLLFRTAHDVFMQLQAARAKLTDSRERPSGELKVTTSPGLGINWLVPRLTEFTSLYPEI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++++D+SM AD A+R RKP Q LIQRKL +I HAY +P Y K P + Sbjct: 131 RLALTLTDEELDLSMREADVALRTRKPTQ-PDLIQRKLFSIGFHAYCSPDYAKKFGTPRT 189 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ELD H LI +P +++ NWL R PR +VN+ L +++ C G GI Sbjct: 190 LEELDNHRLIVLNAQNLPPHLQNRNWLIEAGRNGAGPREPFFKVNNVLGLVRACQQGIGI 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LPDY++ + L+++ + + YF YPE LK+ +++ FR+FI KA+ W Sbjct: 250 AALPDYLIDEANRLLQLFGEDDSIQLDAYFVYPEELKSVARVQVFRDFIVSKAQRW 305 >gi|182677057|ref|YP_001831203.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182632940|gb|ACB93714.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 294 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 185/297 (62%), Gaps = 3/297 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A+ GSFTHA L LSQS++SRQ+ LE ++ + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAAAKVGSFTHAGSMLGLSQSAVSRQVGALEGDLQVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V KL+ + L ES +P+G LRI T + +G L L EFL LYPDI Sbjct: 61 GEVLYRTVQDVMAKLDQARTRLNESRERPNGDLRITTNVAIGTGWLTPRLGEFLDLYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ LIL ++++D+ M AD A+RLR+P+Q LI+R+L T+H H YA+ Y+K +P Sbjct: 121 RLHLILTDEELDLGMRAADVALRLREPVQ-PDLIRRRLFTVHYHLYASVDYVKYHGQPQR 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I++LD H LI++ ++D N + R PR+S L V + +++ + G GI Sbjct: 180 IEDLDDHRLISYDAAAASYLDDLNAPLHIGRNAKHPRLSALSVTNIIALQKAVEQGVGIG 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +LPDY+ +V+IM D +TP Y YPE LK+ +++ FR+F+ A+ W F Sbjct: 240 VLPDYL--KTSQVVQIMTDAVTPELECYLVYPEELKSVARIQVFRDFLVSSAQRWNF 294 >gi|163794423|ref|ZP_02188394.1| Transcriptional regulator [alpha proteobacterium BAL199] gi|159180147|gb|EDP64670.1| Transcriptional regulator [alpha proteobacterium BAL199] Length = 296 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 133/298 (44%), Positives = 185/298 (62%), Gaps = 3/298 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVAEAGSFTHAGDTLNLSQSAVSRQISHLEESLRVSLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + +V+ KL TT+ L E +P G LR+ TT+ LG N L + FL LYP+I Sbjct: 61 GEILFQTARDVFAKLATTEAILAEGKDRPKGPLRLTTTVALGSNWLAPRVGAFLELYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + LIL++ ++D+SM AD A+RL P Q LIQR L TI H YAAP YLK P + Sbjct: 121 SLTLILNDSELDLSMRQADVALRLTPPRQ-PDLIQRHLKTIKFHLYAAPSYLKAAGVPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H LI +G+ + NWL V P G P S L+VN+Y ++ + G GI Sbjct: 180 PADLAAHRLIIYGETAHPPFPNVNWLLDVASGPRGRPG-SVLRVNNYFAMYRAVQTGIGI 238 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 A LPDY+ +++ NL+R++ D+ P YF YPE L+++ ++ R+F+ + +F Sbjct: 239 AALPDYMAREDVNLIRVVPDLEGPQVPAYFVYPEELRHSKRITVLRDFLIQEVAKSQF 296 >gi|262276972|ref|ZP_06054765.1| transcriptional regulator [alpha proteobacterium HIMB114] gi|262224075|gb|EEY74534.1| transcriptional regulator [alpha proteobacterium HIMB114] Length = 294 Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL++F+ V ++GSFT A E L+LSQS+ISRQI LE E+ LF RHARGL+LTE Sbjct: 1 MDWDKLKIFHAVTQAGSFTKAGEVLNLSQSAISRQIQSLEYELKCSLFQRHARGLSLTEN 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++ +EV K++ + +L E KPSGKL + T + G L +KEF PDI Sbjct: 61 GETLYKTANEVISKIKEVETDLVERKDKPSGKLVVTTVVGFGGIWLTPRIKEFRDKNPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L++ N ++D+S+ AD AI +R P Q + IQRKLV I+ H Y + Y+ P + Sbjct: 121 EVELVVTNDELDLSLREADIAIWMRPPKQ-LNYIQRKLVDINYHIYGSSKYIAKKGTPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++LDKH+LIT+G P + + W+ + + R ++VN+ S+M G+G+A Sbjct: 180 AKDLDKHDLITYGKGTPSPLSEKEWILKLGSK--QKRKPVMKVNNIYSLMLAVDAGAGLA 237 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LPDY+V DN LVR++ + P + +F YP++LKN ++KAFR+FIF K +W F Sbjct: 238 ALPDYMVGDNKGLVRVLPETKGPKYEAHFVYPQSLKNVARVKAFRDFIFNKVAEWNF 294 >gi|144898697|emb|CAM75561.1| redox-sensitive transcriptional activator [Magnetospirillum gryphiswaldense MSR-1] Length = 297 Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 127/296 (42%), Positives = 184/296 (62%), Gaps = 3/296 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++ +++ KL T+ L ES +P G L+I TT+ G L +KEFL LYPDI Sbjct: 61 GELLYKTARDIFSKLAMTEALLTESRERPQGPLKITTTVAFGSLWLTPRIKEFLDLYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L + ++D++M AD AIR+ P Q LIQR L+T+H + YAAP YLK P S Sbjct: 121 AVTMVLYDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLTMHYNVYAAPEYLKKYGMPKS 179 Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++LD H+++ +GD + + + NWL R L+VN+ I + G G Sbjct: 180 AEDLDNHHIVIYGDDARVSPPVANVNWLLETGAQPSVQRKPVLEVNNIYGIYRAVKSGLG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +A LPDY+ + NLV I+ ++ P YF YPE L+++ ++ FR+F+ K ++ Sbjct: 240 VAALPDYMTTEADNLVHILPELKGPKLDAYFVYPEELRHSKRITVFRDFLLSKIQE 295 >gi|218662152|ref|ZP_03518082.1| probable transcriptional regulator protein, LysR family [Rhizobium etli IE4771] Length = 245 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 117/218 (53%), Positives = 153/218 (70%), Gaps = 1/218 (0%) Query: 82 IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYAD 141 ++L E++ PSGKLR+ TT+ LGQ L ++EFL LYPD+QIQLILDN+++D++M +AD Sbjct: 1 MQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYPDVQIQLILDNEEVDVNMRHAD 60 Query: 142 CAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKC 201 CAIRLR+P Q S LIQRKL T+HMH YAAP Y+ EP I++LD H +ITFG+ P Sbjct: 61 CAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEPQKIEDLDNHRIITFGEPAPSY 119 Query: 202 MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMED 261 + D NWL R RI LQ+NS SI + C+LG G+A LPDYIV +P L+++ + Sbjct: 120 LLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIGVACLPDYIVGRDPGLIQLAIN 179 Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 PSF YFCYP+ +KN KLKAFR+FI KAR+W F Sbjct: 180 ADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 217 >gi|209963967|ref|YP_002296882.1| transcriptional regulator, LysR family protein [Rhodospirillum centenum SW] gi|209957433|gb|ACI98069.1| transcriptional regulator, LysR family protein [Rhodospirillum centenum SW] Length = 303 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 133/294 (45%), Positives = 186/294 (63%), Gaps = 1/294 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVAEAGSFTHAGETLNLSQSAVSRQISALEESLHVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R EV+ KL T+ L ES P G L++ TT+ G L ++EFL LYPD+ Sbjct: 61 GELLYRTAREVFAKLSMTEAMLSESKEHPKGPLKVTTTMAFGSTWLTPRVREFLSLYPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L+LD+ ++D+SM AD AIR+ P Q LIQR L+T+ +H YA Y + P S Sbjct: 121 QLSLLLDDTELDLSMREADIAIRMSAPRQ-PDLIQRHLMTVRVHIYAHRAYAEKRGLPQS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + ELD H++I + + + NWL V P G R + L+VNS ++ + G GIA Sbjct: 180 LDELDHHDIIAYPGETRAPVSNINWLLHVGDPPGGERQTVLRVNSLYAMYRAVESGLGIA 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LPDY+V NP++VR++ DV P YF Y E L+++ ++ FR+F+ K ++ Sbjct: 240 SLPDYVVDGNPDIVRVLPDVSGPRIDAYFVYAEELRHSKRIAVFRDFLVRKVQE 293 >gi|300024873|ref|YP_003757484.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526694|gb|ADJ25163.1| transcriptional regulator, LysR family [Hyphomicrobium denitrificans ATCC 51888] Length = 295 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/291 (41%), Positives = 182/291 (62%), Gaps = 1/291 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ A +GSFTHA EQLH+SQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAAAEAGSFTHAGEQLHMSQSAVSRQISALEANLKVTLFHRHARGLVLTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +EV+ KL+T + L +S+ KPSG LRI I G L L+EF LYP+I Sbjct: 61 GELLNRTVAEVFAKLQTAETLLSDSTSKPSGDLRITAPIGFGTIWLTPRLQEFGDLYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++LIL++ +DI M AD AI R+P Q + LI+R L + A+A+ YL+ P + Sbjct: 121 RVELILNDDQVDIGMRAADVAIWTREPEQ-ADLIRRSLFESRVRAFASAQYLRKHGTPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + ELD+H +I + + + ++ +W+ R PR + L+VNS ++I G GI Sbjct: 180 LAELDQHRIIAYTGIPAQHLDAMSWIEKAGREGAAPREAALRVNSVVAIKYAIQAGIGIG 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++PDY+ + +LV ++ + PS + F Y E LK + K++ R+F+ K Sbjct: 240 MIPDYMSDEQSDLVPVLAEFEQPSLNLIFAYAEELKASKKVQLLRDFLVSK 290 >gi|239787490|emb|CAX83960.1| Transcriptional regulator, LysR family [uncultured bacterium] Length = 296 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/291 (43%), Positives = 178/291 (61%), Gaps = 1/291 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GSFTHA E+L+LSQS+ISRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSFTHAGERLNLSQSAISRQISALEESLNVSLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V+ KL + L E+ +P G L I TT+ G L L++FL +YPDI Sbjct: 61 GDLLYRTVHDVFAKLSQVEARLGENKDRPEGPLTITTTVAFGSLWLTPRLRQFLEMYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L++ ++D+ M AD AIR P Q +LIQR L T+ YA+ YLK P S Sbjct: 121 EVSLLLNDSELDLGMREADVAIRFTPPRQ-PNLIQRPLYTLRYQVYASTEYLKKYGMPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H +IT+GD ++ NWL GE R L+VN+ I + G GIA Sbjct: 180 PDDLSNHRIITYGDDGKLPADNVNWLLRAMAKEGETRRPVLRVNNIYGIFRAVRSGLGIA 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LP+Y + PNLV+++ ++ P YF YPE L++T ++ FR+F+ K Sbjct: 240 ALPEYFDHEAPNLVQVLPELQGPLVEAYFVYPEELRHTKRIVVFRDFLIRK 290 >gi|75676638|ref|YP_319059.1| LysR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74421508|gb|ABA05707.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi Nb-255] Length = 297 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/295 (43%), Positives = 180/295 (61%), Gaps = 2/295 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+ LE E+ + LF+RHARGL LTEQG Sbjct: 2 DWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVPLFHRHARGLILTEQG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L R +V+ +L+ + +L +S +PSG L++ TT+ +G N L L EF LYPDI+ Sbjct: 62 DLLFRTAHQVFMQLQAARAKLADSRERPSGDLKVTTTLGVGINWLIPRLGEFTSLYPDIR 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L ++++D+SM AD AIR KP Q LIQRKL I HAY + Y+K P ++ Sbjct: 122 ISLALTDEELDLSMREADIAIRTYKPTQ-PDLIQRKLFAICFHAYCSTEYVKRFGTPRTL 180 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +EL H +I + +++ NWL R P VN+ + + C G GIA Sbjct: 181 EELSGHRIILLNETQASPHLQNRNWLIEAARNRSGPHEPYFTVNNIVGLFSACQQGLGIA 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LPDY+V +N LV++ + + YF YPE LK+ +++ FR+F+ KA+ W Sbjct: 241 ALPDYLVGENNLLVQLFGESDSIQLDTYFVYPEELKSVARVQVFRDFVVSKAQRW 295 >gi|114327383|ref|YP_744540.1| LysR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315557|gb|ABI61617.1| transcriptional regulators, LysR family [Granulibacter bethesdensis CGDNIH1] Length = 294 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 130/291 (44%), Positives = 181/291 (62%), Gaps = 2/291 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVAEAGSFTHAGDTLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R EV+ KL T+ L ES KP+G+L++ TT+ G + L L +FL YPD+ Sbjct: 61 GESLNRTVREVFAKLAMTEALLTESKEKPAGRLKVTTTVGFGASWLAPRLHQFLAAYPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+LD+ D+D++M AD AIR+ P Q L+QR L+TI H P Y + P S Sbjct: 121 SLSLLLDDADLDLAMREADVAIRMHPPKQ-PDLVQRHLMTIKWHVVGTPAYFEQHGRPQS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++LD H LI FGD + + NWLA R G PR L VNS ++ G GI Sbjct: 180 VEDLDNHRLILFGD-YHSPVNNINWLAEAGRKSGTPRRPLLDVNSLQAMALAIQSGLGIG 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LPDY+ + L R++ ++ +P VYF YPE L+++ ++ FR+F+ K Sbjct: 239 ALPDYMSNEMDGLERVLPEIESPKIDVYFVYPEELRSSKRVSVFRDFLLGK 289 >gi|329114634|ref|ZP_08243393.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter pomorum DM001] gi|326696114|gb|EGE47796.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter pomorum DM001] Length = 298 Score = 245 bits (625), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 127/288 (44%), Positives = 179/288 (62%), Gaps = 2/288 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE + + LF+RHARGL LTEQG Sbjct: 7 DWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEDVLQVPLFHRHARGLILTEQG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 LH+ EV+ KLE TQ L ES K +G+LR+ TT G L L F+ P+I Sbjct: 67 ETLHKTVREVFSKLEMTQTLLTESKEKAAGRLRVTTTTGFGNCWLMPRLHRFMADNPEID 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I LIL++ D+D+ M AD A+R+ P Q LIQR L + +AAP Y++ P S+ Sbjct: 127 ICLILEDNDLDLGMREADVAVRMHAPRQ-PDLIQRHLADFSLPIFAAPLYIEKYGMPKSL 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +E+ +H L+ FG+ P NWLA R G +I+ L+VNS ++ G GI Sbjct: 186 EEIKEHQLVLFGEHHPPVAH-VNWLAQACRNDGSTQIARLEVNSMAAMASAIAAGLGIGS 244 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P Y K+ P+LV+I+ ++ TP+ YF YPE L+++ ++ FR+F+ Sbjct: 245 IPTYAAKEFPDLVQILPEITTPTVDAYFVYPEELRSSKRVAVFRDFLM 292 >gi|258542767|ref|YP_003188200.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256633845|dbj|BAH99820.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-01] gi|256636904|dbj|BAI02873.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-03] gi|256639957|dbj|BAI05919.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-07] gi|256643013|dbj|BAI08968.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-22] gi|256646068|dbj|BAI12016.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-26] gi|256649121|dbj|BAI15062.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-32] gi|256652108|dbj|BAI18042.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655165|dbj|BAI21092.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-12] Length = 293 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 178/289 (61%), Gaps = 2/289 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEDVLQVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G LH+ EV+ KLE TQ L ES K +G+LR+ TT G L L F+ P+I Sbjct: 61 GETLHKTVREVFSKLEMTQTLLTESKEKAAGRLRVTTTTGFGNCWLMPRLHRFMADNPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I LIL++ D+D+ M AD A+R+ P Q LIQR L + +AAP Y++ P S Sbjct: 121 DICLILEDNDLDLGMREADVAVRMHAPRQ-PDLIQRHLADFSLPIFAAPLYIEKYGMPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++E+ +H L+ FG+ P NWLA R G + + L+VNS ++ G GI Sbjct: 180 LEEIKEHQLVLFGEHHPPVAH-VNWLAQACRTDGSTQTAQLEVNSMAAMASAIAAGLGIG 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P Y K+ P+LV+I+ ++ TP+ YF YPE L+++ ++ FR+F+ Sbjct: 239 SIPTYAAKEFPDLVQILPEITTPTVDAYFVYPEELRSSKRVAVFRDFLM 287 >gi|167042012|gb|ABZ06748.1| putative LysR substrate binding domain protein [uncultured marine microorganism HF4000_141F21] Length = 296 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 183/297 (61%), Gaps = 1/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL++F+ VA +G+FT A L+LSQS+ISRQI LE E+ +LF RHARGL+LTE Sbjct: 1 MDWDKLKIFHAVAEAGNFTKATYILNLSQSAISRQIQSLEQELKTQLFERHARGLSLTEN 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + EV KL+ + L + K SGKL + T + LG L ++EF+ L P+I Sbjct: 61 GEYLFKTAREVISKLKDVESTLMDKKNKLSGKLTVTTVVSLGTTWLTPRIQEFMKLNPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+LI D+K++D+S AD I +R+P Q + +Q+KL+ I+ H Y + YL+ P + Sbjct: 121 EIELIFDDKELDLSTRQADIGIWMRRPKQ-LNYVQKKLIDINYHIYGSTKYLEQNGHPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +QEL+KHN I++G P + + +W + + R ++VNS ++ G G+A Sbjct: 180 LQELNKHNFISYGKGAPSPVFNPDWALKLGVKDNKKRKPVMKVNSIYGLLLAVQSGVGLA 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LPDYI PN+V+++ + P YF YP++L+NT ++ AFRNF++ K W+F Sbjct: 240 ALPDYITISVPNIVKVLPQIEGPKTEAYFVYPQSLRNTARVIAFRNFLYSKVSKWEF 296 >gi|288957074|ref|YP_003447415.1| transcriptional regulator [Azospirillum sp. B510] gi|288909382|dbj|BAI70871.1| transcriptional regulator [Azospirillum sp. B510] Length = 296 Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 132/298 (44%), Positives = 184/298 (61%), Gaps = 3/298 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE +G+ LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVAEAGSFTHAGETLNLSQSAVSRQISALEESLGVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G LHR +V+ KL T+ L ES P G LR+ TT+ G L + EF+ +YPDI Sbjct: 61 GELLHRTARDVFAKLSMTEAMLTESREHPKGPLRVTTTVAFGSTWLTPRINEFMSIYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L++D+ ++D++M AD AIR+ P Q LIQR L++I H YA+ YLK P + Sbjct: 121 QLTLLIDDDELDLAMREADIAIRMNTPRQ-PDLIQRHLMSIRFHLYASQGYLKKKGTPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + ELD H+LIT+ + + + NW+ + P R LQVNS +I + G GI Sbjct: 180 LAELDSHDLITYPPDVRAPIPNVNWVMEMGDP-SPNRKPILQVNSVYAIYRAVESGLGIG 238 Query: 243 LLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LPD++V + ++ RIM DV P YF Y E L+++ ++ FR+F+ K + F Sbjct: 239 ALPDFLVDSFSKDVTRIMPDVEGPKVDAYFVYAEELRHSKRIAVFRDFLVKKVAETPF 296 >gi|162148926|ref|YP_001603387.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787503|emb|CAP57099.1| Transcriptional regulator LysR [Gluconacetobacter diazotrophicus PAl 5] Length = 294 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 123/289 (42%), Positives = 173/289 (59%), Gaps = 2/289 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++ EV+ KL TQ L ES K +G+LR+ TT G L L F+ PDI Sbjct: 61 GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFVDANPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I LIL++ D+D+ M AD A+R+ P Q L+QR L + YA+P YL+ P + Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLVQRHLADFPLPIYASPGYLEEFGTPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +L H L+ FG P + NWLA P E R + ++VNS ++ + G GI Sbjct: 180 LDDLSSHKLVLFGGYHPP-VPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIG 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P Y +P+LV+I+ DV P+ YF YPE L+ + ++ FR+F+ Sbjct: 239 SIPAYAAVLHPHLVKILSDVTVPTVDAYFVYPEELRTSKRVAVFRDFLL 287 >gi|148261425|ref|YP_001235552.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326404905|ref|YP_004284987.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146403106|gb|ABQ31633.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5] gi|325051767|dbj|BAJ82105.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 300 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 130/290 (44%), Positives = 183/290 (63%), Gaps = 4/290 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 6 MDWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALAVPLFHRHARGLILTEQ 65 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L+R +V+ KL T+ L ES +P+G+L++ TT G L L+ FL YPD+ Sbjct: 66 GEQLNRTVRDVFAKLAMTEALLAESKERPAGRLKVTTTHSFGVVWLAPRLRAFLKQYPDV 125 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-REPL 181 I L+LD+ D+D++M AD AIR+ P Q L+QR L I +A+ YL+ + P Sbjct: 126 SISLLLDDVDLDLAMREADVAIRMHPPRQ-PDLVQRSLGEIRWQIFASEDYLREVGKTPE 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240 ++LD H LI FGD P D NW+A++ RP G R L+VNS +++ G G Sbjct: 185 RPEDLDDHRLILFGDRKPPVA-DVNWIASIGRPDGAAQRAGALEVNSLQAMLVAIRSGIG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +PDY+ +D LVRI+ +V P +YF YPE L+N+ ++ FR+F+ Sbjct: 244 IGAVPDYLTEDTTGLVRILPEVKAPKIDMYFVYPEELRNSKRVSVFRDFL 293 >gi|254455811|ref|ZP_05069240.1| transcriptional Regulator, LysR family [Candidatus Pelagibacter sp. HTCC7211] gi|207082813|gb|EDZ60239.1| transcriptional Regulator, LysR family [Candidatus Pelagibacter sp. HTCC7211] Length = 295 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 120/295 (40%), Positives = 186/295 (63%), Gaps = 1/295 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL++F+ VA +GSFT+A L+LSQS+ISRQI LE ++ ++LF RHARGLTLTE G Sbjct: 2 DWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTENG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + EV KL+ + L + KP+GKL I T G + L ++EF+ L P+I+ Sbjct: 62 EYVFKTAHEVISKLKEVETSLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMRLNPEIE 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L+ D+K++D+S AD I +R+P Q + IQ+KLV I Y + YL+ P +I Sbjct: 122 IELVFDDKELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDIKYFIYGSNKYLEKFGMPKTI 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L+KH I+FG P + + +W + G+ R S ++VNS + ++ G G+A Sbjct: 181 GDLNKHKFISFGKGAPSPVYNPDWALKLGMHDGKKRKSIMKVNSVMGLLLAVESGVGLAA 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 LP+Y+V ++ N+++++ P +F YP++LKNT +++AFRNF+F K DWK Sbjct: 241 LPEYLVSNSNNVIKVLPKSEGPITEAHFVYPQSLKNTARVQAFRNFLFSKIGDWK 295 >gi|209545318|ref|YP_002277547.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532995|gb|ACI52932.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 294 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 122/289 (42%), Positives = 173/289 (59%), Gaps = 2/289 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++ EV+ KL TQ L ES K +G+LR+ TT G L L F+ PDI Sbjct: 61 GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFMDANPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I LIL++ D+D+ M AD A+R+ P Q L+QR L + YA+P YL+ P + Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLVQRHLADFPLPIYASPGYLEEFGTPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +L H L+ FG P + NWLA P E R + ++VNS ++ + G GI Sbjct: 180 LDDLSSHKLVLFGGYHPP-VPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIG 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P Y +P+LV+I+ +V P+ YF YPE L+ + ++ FR+F+ Sbjct: 239 SIPAYAAVLHPHLVKILPEVTVPTVDAYFVYPEELRTSKRVAVFRDFLL 287 >gi|91763001|ref|ZP_01264965.1| probable transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002] gi|91717414|gb|EAS84065.1| probable transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 296 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 185/295 (62%), Gaps = 1/295 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL++F+ VA +GSFT+A L+LSQS+ISRQI LE ++ ++LF RHARGLTLTE G Sbjct: 2 DWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTENG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + +V KL+ + L + KP+GKL I T G + L ++EF+ L P+I+ Sbjct: 62 EYLFKTAHDVISKLKEVESTLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMTLNPEIE 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+LI ++K++D+S AD I +R+P Q + IQ+KLV + + Y + YL+ P +I Sbjct: 122 IELIFEDKELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDLKYYIYGSNKYLEKHGMPKTI 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L+KH I+FG P + D +W + G+ R ++VNS + ++ G G+A Sbjct: 181 SDLNKHKFISFGKGAPSPVYDPDWALKLGIKDGKKRKPVMKVNSVMGLLLAVEAGVGLAA 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 LP+Y+V ++ N+++++ P +F YP++LKNT ++ AFRNF+F K DWK Sbjct: 241 LPEYLVSNSNNIIKVLPSSEGPITEAHFVYPQSLKNTARITAFRNFLFSKIGDWK 295 >gi|167042084|gb|ABZ06819.1| putative LysR substrate binding domain protein [uncultured marine microorganism HF4000_141I21] Length = 296 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 117/296 (39%), Positives = 181/296 (61%), Gaps = 1/296 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL++F+ VA +G+FT A L+LSQS+ISRQI LE E+ +LF RHARGL+LTE G Sbjct: 2 DWDKLKIFHAVAEAGNFTKATYILNLSQSAISRQIQSLEQELKTQLFERHARGLSLTENG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + EV KL+ + L + K SGKL + T + G L ++EF+ L P+I+ Sbjct: 62 EYLFKTAREVISKLKDVESTLMDKKNKLSGKLTVTTVVSFGTTWLTPRIQEFMKLNPEIE 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+LI D+K++D+S AD I +R+P Q + +Q+KL+ I+ H Y + YL+ P ++ Sbjct: 122 IELIFDDKELDLSTRQADIGIWMRRPKQ-LNYVQKKLIDINYHIYGSTKYLEQIGHPKTL 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 QEL+KHN I++G P + + +W + + R ++VNS ++ G G+A Sbjct: 181 QELNKHNFISYGKGAPSPVFNPDWALKLGVKDNKKRKPVMKVNSIYGLLLAVQSGVGLAA 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LPDYI PN+++++ + P YF YP++L+N ++ AFRNF++ K W+F Sbjct: 241 LPDYITISVPNIIKVLPQIEGPKTEAYFVYPQSLRNMARVIAFRNFLYSKVSKWEF 296 >gi|71083931|ref|YP_266651.1| transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062] gi|71063044|gb|AAZ22047.1| probable transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062] Length = 296 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/295 (40%), Positives = 185/295 (62%), Gaps = 1/295 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL++F+ VA +GSFT+A L+LSQS+ISRQI LE ++ ++LF RHARGLTLTE G Sbjct: 2 DWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTENG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + +V KL+ + L + KP+GKL I T G + L ++EF+ L P+I+ Sbjct: 62 EYLFKTAHDVISKLKEVESTLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMTLNPEIE 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+LI +++++D+S AD I +R+P Q + IQ+KLV + + Y + YL+ P +I Sbjct: 122 IELIFEDRELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDLKYYIYGSNKYLEKHGMPKTI 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L+KH I+FG P + D +W + G+ R ++VNS + ++ G G+A Sbjct: 181 SDLNKHKFISFGKGAPSPVYDPDWALKLGIKDGKKRKPVMKVNSVMGLLLAVEAGVGLAA 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 LP+Y+V ++ N+++++ P +F YP++LKNT ++ AFRNF+F K DWK Sbjct: 241 LPEYLVSNSNNIIKVLPSSEGPITEAHFVYPQSLKNTARITAFRNFLFSKIGDWK 295 >gi|85715967|ref|ZP_01046944.1| Transcriptional regulatory protein, LysR family protein [Nitrobacter sp. Nb-311A] gi|85697165|gb|EAQ35046.1| Transcriptional regulatory protein, LysR family protein [Nitrobacter sp. Nb-311A] Length = 297 Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 129/295 (43%), Positives = 181/295 (61%), Gaps = 2/295 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKL+VF+ A +GSFTHA EQL LSQS++SRQ+ LE E+ + LF+RHARGL LTEQG Sbjct: 2 DWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVPLFHRHARGLILTEQG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L R EV+ +L+ + +L +S +PSG L++ TT +G N L L EF LYP+I+ Sbjct: 62 DLLFRTAHEVFMQLKAARAQLADSRERPSGDLKVTTTPGVGINWLIPRLGEFTSLYPEIR 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L ++++D+SM AD AIR+ KP Q LIQRKL I HAY + Y+K P ++ Sbjct: 122 ISLLLTDEELDLSMREADIAIRIYKPTQ-PDLIQRKLFAICFHAYCSTEYVKRFGTPRTL 180 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +EL H +I + +++ NWL R P VN+ L + C G GIA Sbjct: 181 EELSGHRIILLNETQASPHLQNRNWLIEAARSRSGPHEPYFTVNNILGLFSACQQGLGIA 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LPDY+V N LV++ + + YF YPE LK+ +++AFR+F+ KA+ W Sbjct: 241 ALPDYLVGGNNLLVQLFSESDSIQLDTYFVYPEELKSVARVQAFRDFVVSKAQRW 295 >gi|330813815|ref|YP_004358054.1| transcriptional regulator, LysR family [Candidatus Pelagibacter sp. IMCC9063] gi|327486910|gb|AEA81315.1| transcriptional regulator, LysR family [Candidatus Pelagibacter sp. IMCC9063] Length = 294 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/297 (39%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL++F+ V ++ SFT AAE LHLSQS+ISRQI LE E+ LF RHARGL+LT+ Sbjct: 1 MDWDKLKIFHAVTQATSFTKAAEVLHLSQSAISRQIQSLEHELKCTLFERHARGLSLTDN 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++ +EV K++ + +L + KPSGK+ + T + G L ++EF+ PDI Sbjct: 61 GELLYKTANEVISKIKDVESDLMDEKHKPSGKIVVTTVVGFGGIWLTPRIQEFMEKNPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++LI+ ++++D+S+ AD AI +R+P Q + IQ+K++ I+ H Y++ YL+ P + Sbjct: 121 EVELIVTDQELDLSIREADVAIWMRQPKQ-LNYIQKKIININYHIYSSSKYLEKHGVPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +ELDKH LIT+G P + W+ V R + ++VN+ S++ G G+A Sbjct: 180 GKELDKHKLITYGRGTPSPLSQKEWILKVG--TKSKRKAVMKVNNIYSLLLAVESGVGLA 237 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 LP+Y+ P LV+++ ++ P++ +F YP++LKN ++KAFR+FIF K + +F Sbjct: 238 ALPNYMAVGKPGLVKVLPEITGPTYEAHFVYPQSLKNVARVKAFRDFIFSKIKQSEF 294 >gi|296532777|ref|ZP_06895456.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296266885|gb|EFH12831.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 297 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 123/290 (42%), Positives = 179/290 (61%), Gaps = 2/290 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQI LE + + LF+RHARGL LT Sbjct: 1 MPLDWDKLRVFHAVAEAGSFTHAGESLNLSQSAVSRQIQALEEALAVPLFHRHARGLILT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R EV+ KL T+ L ES + +G+L++ TT G L L++F+ L+ Sbjct: 61 EQGETLNRTVREVFAKLAMTEALLTESRERAAGRLKVTTTTGFGTAWLAPRLRKFMGLHS 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ + L+LD+ D+D++M AD AIR+ P Q LIQR + T +P YLK P Sbjct: 121 DVTVTLLLDDADLDLAMREADVAIRMHPPKQ-PDLIQRHVATFGWKIVGSPDYLKGAGIP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++LD H LI +GD P E NWL R G PR + ++VNS +++ G G Sbjct: 180 QRAEDLDAHRLIVYGDYRPPV-ESINWLLEAGRRPGSPRRAAVEVNSLPAMLHAVRSGLG 238 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A LPDY+ +D +L+ ++ D+ +P YF YPE ++++ ++ FR+F+ Sbjct: 239 LAALPDYMSEDLRDLIPVLTDLKSPRIDAYFVYPEEMRHSKRVGVFRDFL 288 >gi|83594231|ref|YP_427983.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577145|gb|ABC23696.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC 11170] Length = 322 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 117/289 (40%), Positives = 174/289 (60%), Gaps = 1/289 (0%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE + + LF+RHARGL LTE Sbjct: 25 NMDWDKLRVFHSVAEAGSFTHAGEALNLSQSAVSRQISALEESLKVALFHRHARGLILTE 84 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG L +V+ KL T + +L E+ +P G L I TT+ G L +K F+ YPD Sbjct: 85 QGELLFDTVHDVFGKLATVEAKLGETKERPEGPLTITTTLSFGAIWLTPRIKRFMDRYPD 144 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + L L++ ++D++M AD A+R P Q LIQR+L ++ H +A+P YLK P Sbjct: 145 IDVTLALNDTELDLAMRQADVALRFMPPRQ-PDLIQRQLFSMPYHVFASPDYLKKHGTPR 203 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++LD H L+ +G+ + + +WL T G R L+VN+ + + G GI Sbjct: 204 RVEDLDDHALVVYGEEFKPPVANMSWLLTAGTREGRARKPILKVNNIYGMFRAVESGLGI 263 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LPDY + LV+I+ + P ++F Y E L+++ ++ FR+F+ Sbjct: 264 AALPDYFSSEASTLVKILPEEHGPEMQIFFVYAEELRHSKRVAVFRDFL 312 >gi|83309761|ref|YP_420025.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944602|dbj|BAE49466.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 297 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 120/293 (40%), Positives = 177/293 (60%), Gaps = 3/293 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R +V+ KL T+ L ES + G L+I TT+ G L +K+FL YP+I Sbjct: 61 GELLYRTARDVFSKLAMTEALLTESRERAQGPLKITTTVAFGSLWLTPRIKDFLDAYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L + ++D++M AD AIR+ P Q LIQR L++++ +AAP Y++ P S Sbjct: 121 AVTMVLFDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLSMNYAVFAAPSYIEKYGMPKS 179 Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +LD H +I +GD + + + NWL PR L+VN+ I + G G Sbjct: 180 ADDLDNHRIIVYGDDTRVSAPVSNVNWLLEAGASPDRPRKPVLEVNNIYGIYRAVKSGLG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IA +P+Y+ + LV I+ ++ P YF YPE L+++ ++ FR+F+ K Sbjct: 240 IAAMPEYLRGEAEALVHILPELKGPKVETYFVYPEELRHSKRITVFRDFLLSK 292 >gi|114570697|ref|YP_757377.1| LysR family transcriptional regulator [Maricaulis maris MCS10] gi|114341159|gb|ABI66439.1| transcriptional regulator, LysR family [Maricaulis maris MCS10] Length = 297 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/297 (38%), Positives = 181/297 (60%), Gaps = 2/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+ F+ A++GS T AAE L LSQS++SRQI+ LE ++G+ LF+RHARGL TE Sbjct: 1 MDWDKLKTFHAAAQAGSLTKAAEMLGLSQSAVSRQIAALENDLGVTLFHRHARGLIPTEP 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L+ E+ K+ + +Q++ +PSG+L++ LG L L EF YP+I Sbjct: 61 GNLLYGAAHEIASKVAIAEAHVQDARDEPSGELKVTAPTALGAIWLAPRLAEFNTEYPNI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L+LD+ ++D++ A+ IR P + L+QRKL+++ H YA+ Y++ P + Sbjct: 121 RIRLMLDDHELDLAGLEAEVGIR-PWPSTQNDLVQRKLLSVRQHLYASHDYVERKGSPKA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241 ELD H +I +G + +W A R G PR + ++VN+ +M+ G GI Sbjct: 180 PSELDDHAIIYYGPPQLAPIPGLDWAAKAGRADGATPRPAVIEVNTIYGVMKAVEAGMGI 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 A LPDY+ ++N LVR++ D+ P F V+F YP L+ + ++ AFR+F+ +AR W+ Sbjct: 240 AALPDYVARENTKLVRVLPDLDGPDFEVFFVYPSELRGSRRIVAFRDFLIEQARRWQ 296 >gi|23014768|ref|ZP_00054568.1| COG0583: Transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 297 Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 118/293 (40%), Positives = 177/293 (60%), Gaps = 3/293 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++ +V+ KL T+ L ES + G L+I TT+ G L +K+FL YP+I Sbjct: 61 GELLYKTARDVFSKLAMTEALLTESRERAQGPLKITTTVAFGSLWLTPRIKDFLDAYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L + ++D++M AD AIR+ P Q LIQR L++++ +A+P Y++ P S Sbjct: 121 SVTMVLFDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLSMNYAVFASPAYIEKYGMPKS 179 Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +LD H +I +GD + + + NWL PR L+VN+ I + G G Sbjct: 180 ADDLDNHRIIVYGDDTRVSAPVSNVNWLLEAGASPDRPRKPVLEVNNIYGIYRAVKSGLG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IA +P+Y+ + LV I+ ++ P YF YPE L+++ ++ FR+F+ K Sbjct: 240 IAAMPEYLRGEAEALVHILPELKGPKVEAYFVYPEELRHSKRITVFRDFLLSK 292 >gi|330994451|ref|ZP_08318376.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter sp. SXCC-1] gi|329758451|gb|EGG74970.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter sp. SXCC-1] Length = 294 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 125/289 (43%), Positives = 172/289 (59%), Gaps = 2/289 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++ EV+ KL TQ L ES K +G+LR+ TT G L L F+ PDI Sbjct: 61 GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFMETNPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I LIL++ D+D+ M AD A+R+ P Q LIQR L + YA+ YL + P + Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLIQRHLADFPLPIYASQSYLNDYGTPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++EL+ H L+ FG P + NWLA P E R + L+VNS ++ G GI Sbjct: 180 LEELNAHKLVLFGGYHPP-VPHINWLAETGVPSDERRQARLEVNSLAAMAGAIAAGIGIG 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P Y PNLV+I+ +V P+ YF YPE L+ + ++ FR+F+ Sbjct: 239 SIPLYAASHYPNLVKILPEVPLPTVDAYFVYPEELRTSKRVAVFRDFLL 287 >gi|114768949|ref|ZP_01446575.1| transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] gi|114549866|gb|EAU52747.1| transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] Length = 299 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 115/290 (39%), Positives = 176/290 (60%), Gaps = 6/290 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA GS THA + LHLSQS++SRQI LE ++ + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHSVADVGSLTHAGDVLHLSQSAVSRQIRALEEKLNVTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ TS++ +LET + +++S + G+LR+ TT G L + YPD+ Sbjct: 61 GELLYEATSQMSKRLETAEARIRDSEDEVFGELRVTTTTGFGTLWLAPRINRLYEQYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I LIL+ + +D+ M AD AIR+++P Q + L++R+L+ + M YA YL P S Sbjct: 121 NIDLILEERVLDLPMREADVAIRMKEPSQ-ADLVRRRLMNVKMRLYATQKYLDKHGTPTS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGI 241 I ELD H L+T G + E W +PI E S L +N+Y ++Q + +GI Sbjct: 180 IDELDVHRLVTQGLEARQVNESIAWF----KPILEQNHGSNLTLNNYFGVLQAVLHDTGI 235 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +LPDY+ + P LVR++ + + V+ +PE L+++ +++AFR+F+ Sbjct: 236 GVLPDYVSDEVPELVRVLPEDQSKEIPVFLAFPEELRHSKRVQAFRDFVL 285 >gi|119386679|ref|YP_917734.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377274|gb|ABL72038.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 313 Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 169/289 (58%), Gaps = 4/289 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE +G LF+RHARGL LTEQ Sbjct: 8 MDWDKLRIFHAVADAGSLTHAGDVLHLSQSAVSRQIRALEDSLGTTLFHRHARGLILTEQ 67 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L TS + KL+TT +++S G+L++ TT G L L + YPD+ Sbjct: 68 GELLFEATSSMVRKLDTTAARIRDSEESVFGELKVTTTTGFGTMWLVPRLAKLYDRYPDL 127 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q LI+R+L+ I M YA P YL P + Sbjct: 128 KIDLMLEERVLDLPMREADVAIRMKEPNQ-QDLIRRRLLNIRMRLYATPEYLAKAGMPQT 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++L H LI P+ + +G S L VN+Y ++Q + GI Sbjct: 187 LEDLGPHRLICQNPQTPQVSSGAVLSQML---LGRNISSTLMVNNYFGVLQGVLNHVGIG 243 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +LPDY+ D P+L R++ D+ + V+ +PE L+ + ++ AFR+F+ Sbjct: 244 VLPDYLSADFPSLTRVLPDIQSGEVPVFLAFPEELRASRRVAAFRDFVL 292 >gi|294676107|ref|YP_003576722.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294474927|gb|ADE84315.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB 1003] Length = 302 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/288 (38%), Positives = 170/288 (59%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE +G LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRALEESLGTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L TS + KL+ +++S + G+L++ TT+ G L L + YPD+ Sbjct: 61 GELLFDATSTMAKKLDAAAARIRDSEEEVFGELKVTTTVGFGTMWLAPRLVKLYDRYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+ I M YA P Y+ P Sbjct: 121 KIDLLLEERVLDLPMREADVAIRMKEPAQ-ADLIRKRLINIRMRLYATPEYIARAGRPER 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I+++ KH LI P+ +V G P S L VN+Y ++Q + G+ Sbjct: 180 IEDMAKHRLICQNPATPQVQAGAQLTQSV-MAHGVP--STLMVNNYFGVLQGVLNHIGVG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ D P L R++ V + V+ YPE L+++ ++ AFR+F+ Sbjct: 237 VLPDYLTADFPYLERVLPAVESVEVPVFLAYPEELRSSRRVNAFRDFV 284 >gi|85703356|ref|ZP_01034460.1| transcriptional regulator, LysR family protein [Roseovarius sp. 217] gi|85672284|gb|EAQ27141.1| transcriptional regulator, LysR family protein [Roseovarius sp. 217] Length = 301 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/288 (38%), Positives = 173/288 (60%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA EQLHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGEQLHLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S + G LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATRAMMKRLDAATARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+++HM YA YL+ EP S Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMCLYATQSYLEVHGEPTS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +++ H LI P+ + V+ + S L VN+Y ++Q + GI Sbjct: 180 LDDMNAHRLICQN---PRSAQVGAGAMLVNELMTNDISSLLTVNNYFGVLQGVLHNLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P LVR++ +V + V+ YPE L+++ ++ AFR+F+ Sbjct: 237 VLPDYLTRDFPQLVRVLPEVQSVEVPVFLAYPEELRHSKRIAAFRDFV 284 >gi|83859432|ref|ZP_00952953.1| transcriptional regulatory protein [Oceanicaulis alexandrii HTCC2633] gi|83852879|gb|EAP90732.1| transcriptional regulatory protein [Oceanicaulis alexandrii HTCC2633] Length = 297 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 111/297 (37%), Positives = 174/297 (58%), Gaps = 2/297 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+ F+ A GS T AAE L LSQS++SRQIS LE E+G+KLF+RH RGL LTE Sbjct: 1 MDWDKLKTFHAAAEVGSLTGAAESLALSQSAVSRQISALEGELGVKLFHRHTRGLLLTEP 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + +V K+ + + + +PSG LR+ +G L L F L+P I Sbjct: 61 GRVLFEASKDVAGKIALAEANVLDCRDEPSGLLRVTAPTAMGATWLAPRLARFNALFPQI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+L + ++DIS AD A+R Q + LIQRKL+ + H YA+ YL+ P S Sbjct: 121 RVRLLLVDHELDISNLEADVALRPWAATQ-NDLIQRKLMVVDQHLYASDAYLERKGAPDS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241 ++LD+H+ + +G + + NW + R G+ PR + + ++ +M+ G G+ Sbjct: 180 FEDLDRHDFVGYGPRNLAPIPNLNWHLDLGREPGQKPREALAEASTIHGMMRLAEAGLGL 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 LPDY+ ++N L R+ +++ P F VY +PE L+ + ++KAFR+FI + + W+ Sbjct: 240 VGLPDYVARENDRLKRLFDEIEGPPFEVYLIFPEELRASRRVKAFRDFIMEEVKLWR 296 >gi|149204814|ref|ZP_01881777.1| transcriptional regulator, LysR family protein [Roseovarius sp. TM1035] gi|149141783|gb|EDM29836.1| transcriptional regulator, LysR family protein [Roseovarius sp. TM1035] Length = 301 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 173/288 (60%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA EQLHLSQS++SRQ+ LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGEQLHLSQSAVSRQVRALEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S + G LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATRAMMKRLDAATARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+++HM YA YL EP S Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMCLYATQSYLDAHGEPSS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++++ H LI P+ + V+ + S L VN+Y ++Q + GI Sbjct: 180 LEDMSAHRLICQN---PRSAQVGAGAMLVNELMTNDISSLLTVNNYFGVLQGVLNDLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+++D P LVR++ +V + V+ YPE L+++ ++ AFR+F+ Sbjct: 237 VLPDYLIRDFPQLVRVLPEVQSVEVPVFLAYPEELRHSKRIAAFRDFV 284 >gi|83951820|ref|ZP_00960552.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] gi|83836826|gb|EAP76123.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] Length = 298 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 171/288 (59%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI GLE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDLLHLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S + G+LR+ TT+ G L L + YPD+ Sbjct: 61 GELLFDATRAMMKRLDAATARIRDSEEEVFGELRVTTTVGFGTLWLAPRLPKLFERYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L+L+ +D+ M AD AIR+++P Q + LI+++L+++HM YA Y++ EP Sbjct: 121 NIDLMLEESVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMRLYATKAYIEKFGEPKE 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +L+ H LI P + V + + E S L VN+Y ++Q + G+ Sbjct: 180 MSDLEDHRLICQN---PSAAQVGAGATLVAQLMAEGVPSKLSVNNYFGVLQGVLHNVGLG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ D P LVR++ +V + V+ YPE L+++ ++ AFR+F+ Sbjct: 237 VLPDYLANDFPELVRVIPEVESSEVPVFLAYPEELRHSQRIAAFRDFV 284 >gi|254293470|ref|YP_003059493.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042001|gb|ACT58796.1| transcriptional regulator, LysR family [Hirschia baltica ATCC 49814] Length = 302 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 171/292 (58%), Gaps = 8/292 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DWDKL+ F+ A +GS T A E+L +SQS++SRQI+ LE + LF RHARGL LTE Sbjct: 4 SMDWDKLKSFHAAAETGSLTAAGERLGISQSAVSRQIASLEEALQNSLFQRHARGLILTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G LHR T+E+ T + L ++ P G+L + + G L + +F +YP Sbjct: 64 AGRILHRATAEMASSARTAESALNDTGDTPQGQLHVTAPVAFGSFWLAPRIHKFADMYPR 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++I+L LD+++ D+ A+CAIRL + LIQRKLVT+ YA+ YL N P Sbjct: 124 MRIKLSLDDREFDLLTLEAECAIRL-WAANKADLIQRKLVTVRTSLYASEEYLANNGTPE 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV---DRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++LD+H +I+FG+ + M+ NW V DRP EP LQ+N+ +M+ G Sbjct: 183 RAEDLDRHRIISFGEDAEQ-MKAMNWAQRVGRDDRPEREP---ALQINNVNGMMRAVRSG 238 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA LP+Y+V L +++ ++ P+F +YF YP LK + ++ FR+FI Sbjct: 239 LGIADLPEYMVSKEFGLKKVLPELTGPTFDLYFIYPADLKRSRRISIFRDFI 290 >gi|58038618|ref|YP_190582.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H] gi|58001032|gb|AAW59926.1| Transcriptional regulator, LysR family [Gluconobacter oxydans 621H] Length = 316 Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 174/292 (59%), Gaps = 6/292 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GSFTHA ++L LSQS++SRQIS LE + + LF+RHARGL LTEQ Sbjct: 18 MDWDKLRIFHAVAEAGSFTHAGDRLGLSQSAVSRQISALEDVLRVPLFHRHARGLILTEQ 77 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R EV+ KL TQ L ES + +GK++I TT G + L L FL L+PDI Sbjct: 78 GDVLNRTVREVFSKLALTQAFLSESKERAAGKIKITTTTGFGLSWLSPRLNRFLELHPDI 137 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L++ D+D+ M AD AIRL P Q L+QR L M YA+ YL+ P S Sbjct: 138 EVTLLLEDADLDLGMREADVAIRLHPPTQ-PDLVQRHLANFPMPIYASAEYLERNGTPHS 196 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGS 239 +++L H +I+F G +P + + NWL + R G R L +N+ ++ G+ Sbjct: 197 LEDLANHQIISFAGWHLP--LPNVNWLLDLLRQEGVARQGSRRLAINNISAVANAIAAGT 254 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI LP Y P LVRI+ + P YF YPE L+ + ++ FR+F+ Sbjct: 255 GIGSLPLYAATGYPELVRILPNQQVPLVEAYFVYPEELRTSKRIAVFRDFLL 306 >gi|84503072|ref|ZP_01001168.1| transcriptional regulator, LysR family protein [Oceanicola batsensis HTCC2597] gi|84388616|gb|EAQ01488.1| transcriptional regulator, LysR family protein [Oceanicola batsensis HTCC2597] Length = 307 Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 112/291 (38%), Positives = 172/291 (59%), Gaps = 10/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI GLE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRGLEESLNTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+T +++S + G+LR+ TT G L L + +PD+ Sbjct: 61 GELLFDATRAMAKRLDTATARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKFPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+++ M YA P YL P Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSLRMRMYALPDYLDRAGRPSR 179 Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 I+E+ +H LI T + + L + D S L VN+Y +Q + G Sbjct: 180 IEEISRHRLICQNTSAAQVAAGAQLVQELMSYDVS------SLLTVNNYFGALQAVLNGL 233 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LPDY+V+D P L R++ V + V+ +PE L+++ ++ AFR+F+ Sbjct: 234 GIGVLPDYLVEDFPTLERVLPGVESQEVPVFLAFPEELRHSKRIAAFRDFV 284 >gi|89054666|ref|YP_510117.1| LysR family transcriptional regulator [Jannaschia sp. CCS1] gi|88864215|gb|ABD55092.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1] Length = 304 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 173/291 (59%), Gaps = 10/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVASAGSLTHAGDTLHLSQSAVSRQIRALEEGLDTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S + G+LR+ TTI G L L YPD+ Sbjct: 61 GELLFDATRHMTKRLDAASARIRDSEEEVFGELRVTTTIGFGSLWLAPRLPALYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+R+L+TI+M YA P Y++ P S Sbjct: 121 KIDLMLEERLLDLPMREADVAIRMKEPSQ-ADLIRRRLMTINMRLYATPSYIEKHGMPDS 179 Query: 183 IQELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 I L H LI+ + L + D +G S L VN+Y ++Q + Sbjct: 180 IHALGNHRLISQNAAAAQVSAGAILVRELLSYD--VG----STLAVNNYFGVLQAVIHDL 233 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LPDY+++D P+LVR++ +V + V+ YPE L+ + +++ FR+F+ Sbjct: 234 GIGVLPDYLIQDFPDLVRVLPEVESAEVPVFLAYPEELRQSRRIEVFRDFV 284 >gi|149914758|ref|ZP_01903288.1| phosphoribosylformylglycinamidine synthase subunit II [Roseobacter sp. AzwK-3b] gi|149811551|gb|EDM71386.1| phosphoribosylformylglycinamidine synthase subunit II [Roseobacter sp. AzwK-3b] Length = 301 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 172/288 (59%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQ+ LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDHLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S + G+LR+ TTI G L L + YPD+ Sbjct: 61 GELLFDATRAMLKRLDAATARIRDSEEEVFGELRVTTTIGFGTLWLAPRLPQLYAKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+++HM +A+ YL++ P S Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMCLFASTSYLESRGTPAS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H LI P+ + V+ + S L VN+Y ++Q + GI Sbjct: 180 PDDLKHHRLICQN---PRSAQVGAGATLVNELMTHDVPSLLTVNNYFGVLQGVLHNLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ D P+LVR++ DV + V+ YPE L+++ ++ AFR F+ Sbjct: 237 VLPDYLTHDFPDLVRVLPDVHSVEVPVFLAYPEELRHSKRIAAFREFV 284 >gi|163746586|ref|ZP_02153944.1| transcriptional regulator, LysR family, putative [Oceanibulbus indolifex HEL-45] gi|161380471|gb|EDQ04882.1| transcriptional regulator, LysR family, putative [Oceanibulbus indolifex HEL-45] Length = 303 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 108/291 (37%), Positives = 177/291 (60%), Gaps = 10/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++ LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L TS + +L+ +++S + G+LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATSAMAKRLDAAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEQYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + L++++L+T+ M YA P YL+ P Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLMTVRMGLYATPEYLEKHGTPKR 179 Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++++ H LI T D + ++ L D S L VN+Y ++Q V Sbjct: 180 MEDMADHRLICQNTDSDQVGAGLQLVKELMMYDLR------SLLTVNNYFGVLQGVVHHL 233 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +LP+Y+++D P++V++M D+ + VY YPE L+ + ++ AF++F+ Sbjct: 234 GLGVLPNYLIQDFPHIVQVMPDIESAEVPVYLAYPEELRQSKRVAAFKDFV 284 >gi|163732006|ref|ZP_02139452.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] gi|161394304|gb|EDQ18627.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] Length = 301 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 176/293 (60%), Gaps = 14/293 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T+ + +L+T +++S + G+LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATAAMTRRLDTASARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + LI++KL+ I M YA P YL + P + Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMMIRMCLYATPDYLADYAAPQT 179 Query: 183 IQELDKHNLITFGDLIPKCME-DFNWLAT----VDRPIGEPRISCLQVNSYLSIMQYCVL 237 I+E+ H LI C D + + V + + S L VN+Y ++Q + Sbjct: 180 IEEIKDHRLI--------CQNIDSDQVGAGRSLVQHLMTQNIRSMLTVNNYYGVLQGVLQ 231 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LPDY+ +D P+LVR++ D+ + V+ YPE L+ + ++ AF++F+ Sbjct: 232 NLGIGVLPDYVTEDFPDLVRVLPDLSSADVPVFLAYPEELRQSQRVSAFKDFV 284 >gi|255263589|ref|ZP_05342931.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] gi|255105924|gb|EET48598.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] Length = 303 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 169/288 (58%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA E LHLSQS++SRQ+ LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGETLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ T +++S + G+LR+ TTI G L L YPD+ Sbjct: 61 GELLFDATRSMNKRLDATAARIRDSEEEVFGELRVTTTIGFGSLWLAPRLSTLYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+++ M YA+ YL P Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVRMQLYASREYLVQNPAPAD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++ L +H LI P+ + V + + L VN+Y ++Q GI Sbjct: 180 LERLGEHRLICQN---PRSAQVSASSTLVQELLTHDVPNLLTVNNYYGVLQAVRSNLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY +D P+LVR++ DV + V+ YPE L+ + +++AFR+F+ Sbjct: 237 VLPDYTTEDFPDLVRVLPDVESSEVPVFLAYPEELRQSKRIQAFRDFV 284 >gi|126735636|ref|ZP_01751381.1| transcriptional regulator, LysR family protein [Roseobacter sp. CCS2] gi|126714823|gb|EBA11689.1| transcriptional regulator, LysR family protein [Roseobacter sp. CCS2] Length = 301 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 109/291 (37%), Positives = 170/291 (58%), Gaps = 10/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +LE +++S + G+LR+ TT G L L + LYPD+ Sbjct: 61 GELLFDATKSMNKRLEAASARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYELYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+++ M YA YL+ P Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVRMRLYATQSYLEENGTPAE 179 Query: 183 IQELDKHNLI--TFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ++ H LI + + + L T D P + VN+Y ++Q + Sbjct: 180 LSDMSNHRLIGQSLNSIQVAAGATLLQHLMTADIP------NTFTVNNYFGVLQGVLNNI 233 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LPDY+ +D P+LVR++ D+ + V+ YPE L+ + ++ AFR+F+ Sbjct: 234 GIGVLPDYVTEDFPDLVRVLPDLESGEVPVFLAYPEELRQSKRISAFRDFV 284 >gi|310816546|ref|YP_003964510.1| transcriptional regulator, LysR family protein [Ketogulonicigenium vulgare Y25] gi|308755281|gb|ADO43210.1| transcriptional regulator, LysR family protein [Ketogulonicigenium vulgare Y25] Length = 328 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 171/292 (58%), Gaps = 10/292 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + LF+RHARGL LTE Sbjct: 21 AMDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEEALDTTLFHRHARGLILTE 80 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG L T + +LE +++S G L++ TT G L L + YPD Sbjct: 81 QGELLFEATRSMNKRLEAAAARIRDSEDGVFGTLKVTTTTGFGTMWLAPRLGKLYDQYPD 140 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++I LIL+ + +D+ M AD AIRL++P Q + +I+++L+ + M YA P YL+N Sbjct: 141 LKIDLILEERILDLPMREADVAIRLKEPSQ-ADVIRKRLMAVRMRLYATPEYLQNSPPIN 199 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++++ +H LI+ P+ + N L T D S L VN+Y ++Q + G Sbjct: 200 RLEDIAQHRLISQSLNSPQPVAAINLSQRLMTFD------MASALTVNTYYGVLQGVLAG 253 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LPDY+ +D+PNL R++ + + V+ Y E L+ + ++ AFR+FI Sbjct: 254 IGIGILPDYVTEDSPNLCRVLPYLESSEIPVFIAYAEELRQSRRIAAFRDFI 305 >gi|260427825|ref|ZP_05781804.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260422317|gb|EEX15568.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 305 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 174/289 (60%), Gaps = 4/289 (1%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + LF+RHARGL LTE Sbjct: 4 GMDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRSLEESLNTTLFHRHARGLILTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG L T+ + +++ +++S + G+L++ TT G L L + +PD Sbjct: 64 QGELLFDATAAMVKRIDAATARIRDSEEEVFGELKVTTTHGFGVLWLAPRLTKLYEKFPD 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++I L+L+ + +D+ M AD AIR+++P Q + LI+++L++I M YA+P YL P Sbjct: 124 LKIDLMLEERVLDLPMREADIAIRMKEPSQ-ADLIRKRLMSIRMRMYASPDYLAEHGTPG 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++EL+ H LI P + V + + L VN+Y ++Q V GI Sbjct: 183 ALEELENHRLICQN---PASAQVAAGKLLVQELLTYGPQTALTVNNYFGVLQAVVANLGI 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDYI++D P+++R++ +V + V+ YPE L+++ ++ AFR+F+ Sbjct: 240 GVLPDYIIEDFPSVIRVLPEVESNEVPVFLAYPEELRHSKRVAAFRDFV 288 >gi|126726356|ref|ZP_01742197.1| Transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] gi|126704219|gb|EBA03311.1| Transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] Length = 300 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 110/296 (37%), Positives = 173/296 (58%), Gaps = 4/296 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLRVF+ VA +GS THA + LHLSQS++SRQ+ LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRVFHAVADAGSLTHAGDTLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T+ + +L++ +++S + G+LR+ TTI G L L YPD+ Sbjct: 61 GELLFDATTAMNKRLDSASARIRDSEEEVFGELRVTTTIGFGSLWLAPRLSRLYDQYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + L++++LV IHM +A YL P Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLVNIHMRLFATQEYLDKNGVPEK 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++L H LI P + V I E + L VN+Y ++Q + G+ Sbjct: 180 MEDLFSHRLICQN---PNSTQVQAGATLVQSLIAENIVPFLTVNNYFGVLQSVLNHLGVG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 +LP Y+ P+LVR++ DV + V+ YPE L+++ +++AFR+F+ + RD + Sbjct: 237 VLPGYVEASFPSLVRVLPDVESKEVPVFLAYPEELRHSKRVQAFRDFVQDEIRDER 292 >gi|114766195|ref|ZP_01445195.1| Transcriptional regulator, LysR family protein [Pelagibaca bermudensis HTCC2601] gi|114541566|gb|EAU44609.1| Transcriptional regulator, LysR family protein [Roseovarius sp. HTCC2601] Length = 301 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 174/288 (60%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRSLEESLNTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T+ + +++ +++S + G+L++ TT G L L + +PD+ Sbjct: 61 GELLFDATASMVKRIDAATARIRDSEEEVFGELKVTTTHGFGVLWLAPRLTKLYEKFPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L++I M YA+P YL + P S Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRMYASPEYLADRGVPGS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL +H LI P + V + + L VN+Y ++Q V GI Sbjct: 180 LDELSQHRLICQN---PASSQVAAGKLLVQELLTYDIQTALTVNNYFGVLQAVVANLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDYI++D P++VR++ ++ + V+ YPE L+++ ++ AFR+F+ Sbjct: 237 VLPDYIIEDFPSVVRVLPEIESNEVPVFLAYPEELRHSKRVAAFRDFV 284 >gi|84515576|ref|ZP_01002938.1| transcriptional regulator, LysR family [Loktanella vestfoldensis SKA53] gi|84510859|gb|EAQ07314.1| transcriptional regulator, LysR family [Loktanella vestfoldensis SKA53] Length = 301 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/297 (37%), Positives = 171/297 (57%), Gaps = 22/297 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEETLNTTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +LET +++S + G LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATKSMNKRLETASARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLFEAYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+++ M YA+P YL+ P S Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVRMRLYASPTYLETNGTPES 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---------QVNSYLSIMQ 233 + +L H L+ C L ++ G + L VN+Y ++Q Sbjct: 180 LLDLSDHRLV--------CQS----LNSIQVAAGATLVQHLLTSDIQHLFTVNNYFGVLQ 227 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + GI +LPDY+ +D P+LVR++ D+ + V+ YPE L+ + ++ AFR+F+ Sbjct: 228 GVLNNIGIGVLPDYVTEDFPDLVRVLPDLESGEVPVFLAYPEELRQSKRIAAFRDFV 284 >gi|254485721|ref|ZP_05098926.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] gi|214042590|gb|EEB83228.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] Length = 301 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/291 (37%), Positives = 175/291 (60%), Gaps = 10/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++ LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+T +++S + G+LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATVAMTKRLDTASARIRDSEEEIFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + L+++KL+ I M YA+P YL P Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMMIKMCLYASPTYLAEHGTPQR 179 Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++++ +H LI T D + ++ L D S L VN+Y ++Q + Sbjct: 180 LEDMSEHRLICQNTDSDQVNAGLQLIQQLMMYDVR------SMLTVNNYFGVLQGVIHNL 233 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LPDY+ +D P+LV+++ D + V+ YPE L+ + ++ AF++F+ Sbjct: 234 GIGVLPDYLTQDFPDLVQVLPDTESADVPVFLAYPEELRTSKRVAAFKDFV 284 >gi|110680412|ref|YP_683419.1| LysR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109456528|gb|ABG32733.1| transcriptional regulator, LysR family, putative [Roseobacter denitrificans OCh 114] Length = 301 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 110/291 (37%), Positives = 175/291 (60%), Gaps = 10/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T+ + +L+T +++S + G+LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATAAMTRRLDTAFARIRDSEEEVFGELRVTTTTGFGTLWLSPRLPKLYERYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + LI++KL+ + M YA P YL + P + Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMMVRMCLYATPDYLADHAAPRT 179 Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++E+ H LI T D + L T + S L VN+Y ++Q + Sbjct: 180 LEEIKDHRLICQNTDSDQVGAGRSLVQHLMT------QNIRSMLTVNNYYGVLQGVLQNL 233 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LPDY+ +D P+LV+++ D+ + V+ YPE L+ + ++ AF++F+ Sbjct: 234 GIGVLPDYVTEDFPDLVQVLPDLTSADVPVFLAYPEELRQSQRVSAFKDFV 284 >gi|159044312|ref|YP_001533106.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912072|gb|ABV93505.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 300 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 111/297 (37%), Positives = 172/297 (57%), Gaps = 22/297 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDSLHLSQSAVSRQIRALEESLNTILFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T+ + +L+ +++S + G+LR+ TTI G L L YPD+ Sbjct: 61 GELLFDATAAMTKRLDAASARIRDSEEEVFGQLRVTTTIGFGSLWLAPRLSRLYDRYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+L+ + +D+ M AD AIR+++P Q + LI++KL++I M YA+P YL+ P Sbjct: 121 NVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMSIRMRLYASPSYLERNGRPTR 179 Query: 183 IQELDKHNLI---------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++E+ H +I + G + + E FN T L VN+Y ++Q Sbjct: 180 MEEISSHRIICQNADSAQVSAGHTLVR--EIFNHDVT----------HSLMVNNYFGVLQ 227 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + GI +LPDY+V D P L +++ D + V+ YPE L+++ +++AFR+F+ Sbjct: 228 AVINDLGIGVLPDYLVTDFPQLEQVIPDFESSDVPVFLAYPEELRHSKRIEAFRDFV 284 >gi|254453550|ref|ZP_05066987.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198267956|gb|EDY92226.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 309 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 169/288 (58%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 7 MDWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEESLSTILFHRHARGLILTEQ 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S+ + G+L++ TT G L L YPD+ Sbjct: 67 GELLFDATKSMSRRLDVASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L+L+ + +D+ M AD AIR+++P Q + L+++KL+T+ M YA+ YL Sbjct: 127 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMTVRMRLYASQAYLDKVGGFDE 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I+++ +H LI P + V + + S L VN+Y ++Q + GI Sbjct: 186 IEDIGRHRLICQS---PSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGIG 242 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+++D P LVR++ +V + VYF YPE L+ + ++ AFR+F+ Sbjct: 243 VLPDYVIEDFPTLVRVLPEVESGEVPVYFAYPEELRQSKRIMAFRDFV 290 >gi|254475848|ref|ZP_05089234.1| transcriptional regulator, LysR family [Ruegeria sp. R11] gi|214030091|gb|EEB70926.1| transcriptional regulator, LysR family [Ruegeria sp. R11] Length = 304 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 173/289 (59%), Gaps = 4/289 (1%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI LE + LF+RHARGL LTE Sbjct: 3 GMDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNSTLFHRHARGLILTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG L T + +LE +++S + G+LR+ TT G L L + YPD Sbjct: 63 QGELLFDATKSMSKRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLYEQYPD 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++ L+L+ + +D+ M AD AIR+++P Q + LI+++L+++ M YA+ +Y++ P Sbjct: 123 LKVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVQMKLYASRNYVERNGMPE 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I+++ H LI P+ + + V + + S L VN+Y ++Q + GI Sbjct: 182 VIEDIGAHRLICQN---PRSAQVGSAAVLVQKLMTHNPSSLLTVNNYFGVLQGVIHDLGI 238 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P+LV ++ D T VY YPE L+++ ++ AFR+F+ Sbjct: 239 GVLPDYVTEDFPDLVPVLPDEDTSDVPVYLAYPEELRHSRRISAFRDFV 287 >gi|146276944|ref|YP_001167103.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555185|gb|ABP69798.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17025] Length = 297 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/289 (37%), Positives = 168/289 (58%), Gaps = 4/289 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L TS++ +LE +++S + G+LR+ TT G L L YP + Sbjct: 61 GELLFDATSQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYRKYPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L++I M YA+P Y+ P Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRLYASPDYVAEHGMPEK 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++ H LI +P + A V + S L VN+Y ++Q + G+ Sbjct: 180 MEDFSHHRLIC---QLPGAPQVAAGAALVQEILTNDIPSTLTVNNYFGVLQAVLNNLGVG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++PDY+ P LVR+M +V + V+ YPE L+++ ++ AFR F+ Sbjct: 237 VMPDYLAVAFPQLVRVMPEVESNDVPVFLAYPEELRHSKRVAAFREFVM 285 >gi|260433849|ref|ZP_05787820.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417677|gb|EEX10936.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] Length = 302 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/289 (38%), Positives = 174/289 (60%), Gaps = 5/289 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WDKLR+F+ VA +GS THA ++L+LSQS++SRQI LE +G LF+RHARGL LTEQ Sbjct: 1 MNWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEEALGATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T+ + +LET +++S + G LR+ TT G L L + YPD+ Sbjct: 61 GELLFEATTAMSKRLETAAARIRDSEEEVFGVLRVTTTFGFGTLWLAPRLPKLYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPL 181 I L+L+ + +D+ M AD AIR+++P Q L++++L+T+ M YA YL + P Sbjct: 121 NIDLMLEERVLDLPMREADVAIRMKEPSQ-VDLVRKRLMTVRMILYATKAYLDSHGGAPQ 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++++ KH LI P+ ++ + EP S L VN+Y ++Q + G+ Sbjct: 180 TLEDISKHRLICQNPAAPQVGVGARMVSHL--MAYEPS-SLLTVNNYFGVLQAVLNNLGL 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P+LV ++ D+ T VY YPE L+++ ++ AFR+F+ Sbjct: 237 GVLPDYVTEDFPDLVPVLSDIETADVPVYLAYPEELRHSKRVAAFRDFV 285 >gi|254440317|ref|ZP_05053811.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198255763|gb|EDY80077.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 309 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/288 (37%), Positives = 168/288 (58%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 7 MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLSTILFHRHARGLILTEQ 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S+ + G+L++ TT G L L YPD+ Sbjct: 67 GELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L+L+ + +D+ M AD AIR+++P Q + LI++KL+T+ M YA+ YL Sbjct: 127 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMTVRMRLYASQTYLDKVGGFAE 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I+++ +H LI P + V + + + L VN+Y ++Q + GI Sbjct: 186 IEDIGRHRLICQS---PNAFQVAAGATLVGHLLSYDKPNLLNVNNYFGVLQAVLSDLGIG 242 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P+LVR++ +V + V+ YPE L+ + ++ AFR+F+ Sbjct: 243 VLPDYVTEDFPDLVRVLPEVESGEVPVFLAYPEELRQSKRIMAFRDFV 290 >gi|83942615|ref|ZP_00955076.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. EE-36] gi|83846708|gb|EAP84584.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. EE-36] Length = 301 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 173/288 (60%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++ LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+T +++S + G+LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATVAMSKRLDTAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + L+++KL+ I M YA+P YL P Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMMIKMCMYASPAYLAANGTPQR 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++++ H LI + N + + + S L VN+Y ++Q + GI Sbjct: 180 LEDMSDHRLICQNTDSNQVHAGLNLIQQL---MMHDVRSMLTVNNYFGVLQAVINNLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+++D P+LV+++ + + V+ YPE L+ + ++ AF++F+ Sbjct: 237 VLPDYLIQDFPDLVQVLPETESADVPVFLAYPEELRASKRVAAFKDFV 284 >gi|99080960|ref|YP_613114.1| LysR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037240|gb|ABF63852.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040] Length = 301 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 109/288 (37%), Positives = 172/288 (59%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA E L+LSQS++SRQI GLE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGEHLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +LET +++S G+LR+ TT G L L + YP++ Sbjct: 61 GELLFDATKTMSKRLETASARIRDSEEGVFGELRVTTTTGFGTLWLAPRLIKLYEQYPNL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + LI+++L+T+ M YA+ Y+ P + Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMTVQMRLYASRGYIDKFGWPET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I+E+ H LI + + + V + + S L VN+Y ++Q + GI Sbjct: 180 IEEIRDHRLICQS---LRSAQVGSAAVMVQKLMTHNPKSMLTVNNYFGVLQGVLQDLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P+LV+++ + T VY YPE L+++ ++ AFR+F+ Sbjct: 237 VLPDYVTEDFPDLVQVLPNEDTNGVPVYLAYPEELRHSQRVSAFRDFV 284 >gi|77463507|ref|YP_353011.1| LysR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77387925|gb|ABA79110.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides 2.4.1] Length = 297 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 168/289 (58%), Gaps = 4/289 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T+++ +LE +++S + G+LR+ TT G L L YP + Sbjct: 61 GELLFEATNQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYKKYPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L++I M YA+P Y P Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRLYASPTYAAEHGMPEK 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++ +H LI +P + A V + S L VN+Y ++Q + GI Sbjct: 180 MEDFAQHRLIC---QLPGAPQVAAGAALVQELMSNDIPSMLTVNNYFGVLQAVLNNLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++PDY+ P L+R++ DV + V+ YPE L+++ ++ AFR F+ Sbjct: 237 VMPDYLAVAFPQLIRVLPDVESNDVPVFLAYPEELRHSKRVAAFREFVM 285 >gi|83953856|ref|ZP_00962577.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. NAS-14.1] gi|83841801|gb|EAP80970.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. NAS-14.1] Length = 301 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 173/288 (60%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++ LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+T +++S + G+LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATVAMSKRLDTAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + L+++KL+ I M YA+P YL P Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMMIKMCMYASPAYLAANGTPQR 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++++ H LI + N + + + S L VN+Y ++Q + GI Sbjct: 180 LEDMSDHRLICQNTDSNQVHAGLNLIQQL---MMHDVRSMLTVNNYFGVLQAVINNLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+++D P+LV+++ + + V+ YPE L+ + ++ AF++F+ Sbjct: 237 VLPDYLMQDFPDLVQVLPETESADVPVFLAYPEELRASKRVAAFKDFV 284 >gi|126462363|ref|YP_001043477.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221639368|ref|YP_002525630.1| LysR family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558387|ref|ZP_08412709.1| Transcriptional regulator, LysR family protein [Rhodobacter sphaeroides WS8N] gi|126104027|gb|ABN76705.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17029] gi|221160149|gb|ACM01129.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] gi|332276099|gb|EGJ21414.1| Transcriptional regulator, LysR family protein [Rhodobacter sphaeroides WS8N] Length = 297 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 106/289 (36%), Positives = 168/289 (58%), Gaps = 4/289 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T+++ +LE +++S + G+LR+ TT G L L YP + Sbjct: 61 GELLFEATNQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYKKYPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L++I M YA+P Y P Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRLYASPTYAAEHGMPEK 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++ +H LI +P + A V + S L VN+Y ++Q + GI Sbjct: 180 MEDFAQHRLIC---QLPGAPQVAAGAALVQELMSNDIPSMLTVNNYFGVLQAVLNNLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++PDY+ P L+R++ D+ + V+ YPE L+++ ++ AFR F+ Sbjct: 237 VMPDYLAVAFPQLIRVLPDIESNDVPVFLAYPEELRHSKRVAAFREFVM 285 >gi|260575248|ref|ZP_05843248.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2] gi|259022508|gb|EEW25804.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2] Length = 297 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 165/288 (57%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + LHLSQS++SRQI LE + + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDSLHLSQSAVSRQIRSLEESLSVTLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S + G+LR+ TT G L L YP + Sbjct: 61 GELLFEATKAMVKRLDAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLTALYKKYPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+ I M YA+ YL + P + Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMNIRMRLYASSEYLADHGTPQT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + +H LI + A V + S L VN Y ++Q + GI Sbjct: 180 MDDFTQHRLICQHAGTAQVAAG---AALVQELMSHDIPSTLTVNHYFGVLQAVLNHIGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D PNLVR++ D + V+ YPE L+++ ++ AFR F+ Sbjct: 237 VLPDYLAEDFPNLVRVLPDTESGDVPVFLAYPEELRHSKRVAAFREFV 284 >gi|254511011|ref|ZP_05123078.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] gi|221534722|gb|EEE37710.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] Length = 302 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 5/289 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLDATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L TS + +L+T +++S + G LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATSAMSKRLDTAAARIRDSEDEVFGVLRVTTTFGFGTLWLAPRLPKLYEQYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPL 181 I L+L+ + +D+ M AD AIR+++P Q + L++++L+T+ M YA +YL + P Sbjct: 121 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLMTVRMLLYATRNYLDSHGGAPE 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 S++++ +H LI P + + V + S L VN+Y ++Q + GI Sbjct: 180 SLEDIARHRLIC---QTPSAPQVGAGASMVKHLMAYNPGSLLTVNNYFGVLQGVLHDLGI 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P+LV ++ D+ + VY YPE L+++ ++ AFR+F+ Sbjct: 237 GMLPDYVTEDFPDLVPVLSDIESADVPVYLAYPEELRHSKRIAAFRDFV 285 >gi|254451563|ref|ZP_05065000.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198265969|gb|EDY90239.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 309 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 168/287 (58%), Gaps = 4/287 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI LE + LF+RHARGL LTEQG Sbjct: 8 DWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEEALSTILFHRHARGLILTEQG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L T + +L+ +++S+ + G+L++ TT G L L YPD+ Sbjct: 68 ELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDLN 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L+ + +D+ M AD AIR+++P Q + L+++KL+T+ M YA+ YL I Sbjct: 128 IDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMTVRMRLYASQAYLDKVGGFDEI 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +++ +H LI P + V + + S L VN+Y ++Q + GI + Sbjct: 187 EDIGRHRLICQS---PSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGIGV 243 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY+ +D P LVR++ +V + + VY YPE L+ + ++ AFR+F+ Sbjct: 244 LPDYLTEDFPTLVRVLPEVESGAVPVYLAYPEELRQSKRIMAFRDFV 290 >gi|254453047|ref|ZP_05066484.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198267453|gb|EDY91723.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 309 Score = 205 bits (521), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 106/288 (36%), Positives = 168/288 (58%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 7 MDWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEESLSTILFHRHARGLILTEQ 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S+ + G+L++ TT G L L YPD+ Sbjct: 67 GELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L+L+ + +D+ M AD AIR+++P Q + L+++KL+T+ M YA+ YL Sbjct: 127 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMTVRMRLYASQAYLDKVGGFDE 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I+++ +H LI P + V + + S L VN+Y ++Q + GI Sbjct: 186 IEDIGRHRLICQS---PSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGIG 242 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+++D P LVR++ +V + V+ YPE L+ + ++ AFR+F+ Sbjct: 243 VLPDYVIEDFPTLVRVLPEVESGEVPVFLAYPEELRQSKRIMAFRDFV 290 >gi|259418579|ref|ZP_05742496.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] gi|259344801|gb|EEW56655.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] Length = 301 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 109/288 (37%), Positives = 173/288 (60%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDRLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +LET +++S G+LR+ TT G L L + YP++ Sbjct: 61 GELLFDATKTMAKRLETASARIRDSEEGVFGELRVTTTTGFGTLWLAPRLIKLYEQYPNL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+T+ M YA+ Y+ P + Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMTVQMRLYASRGYIDKFGWPET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I+E+ H LI + + + V + + S L VN+Y ++Q + GI Sbjct: 180 IEEICDHRLICQS---LRSAQVGSAAVMVQKLMTHNPKSMLTVNNYFGVLQGVLQDLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P+LV+++ + T VY YPE L+++ ++ AFR+F+ Sbjct: 237 VLPDYVTEDFPDLVQVLPNEDTNGVPVYLAYPEELRHSQRVSAFRDFV 284 >gi|84684743|ref|ZP_01012643.1| transcriptional regulator, LysR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667078|gb|EAQ13548.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2654] Length = 301 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 110/289 (38%), Positives = 171/289 (59%), Gaps = 6/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA + L+LSQS++SRQI GLE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDALNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S + G+LR+ TT G L L + YPD+ Sbjct: 61 GELLFDATRAMVQRLDAAVARIRDSKEEVFGELRVTTTTGFGSLWLAPRLAKLYEQYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIRL++P Q + LI++KL+ ++M YA YL P Sbjct: 121 KIDLMLEERVLDLPMREADVAIRLKEPSQ-ADLIRKKLMGVNMRLYATHAYLDAHGRPER 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 +++L KH +I + AT + I + S L VN+Y ++Q + G GI Sbjct: 180 MEDLSKHRIICQNTNSAQVSAG----ATFTQEILTHNVDSLLTVNNYFGVLQAVLNGLGI 235 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDYI++D P + R++ + + V+ YPE L+++ ++ AFR+F+ Sbjct: 236 GILPDYILQDFPEIERVLPEEESREIPVFLAYPEELRHSKRIAAFRDFV 284 >gi|126737905|ref|ZP_01753635.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] gi|126721298|gb|EBA18002.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] Length = 301 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 104/288 (36%), Positives = 169/288 (58%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +LE +++S + G+LR+ TT+ G L L + YP++ Sbjct: 61 GELLFDATKSMSARLEAASARIRDSEEEVFGELRVTTTVGFGTLWLAPRLTKLYEQYPNL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + L++++L+T+ M YA+ YL P + Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLMTVQMRLYASRKYLDEHGTPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + ++DKH LI + + + V + S L VN+Y ++Q + GI Sbjct: 180 VDDIDKHRLICQNQ---RSAQVGSASVLVKSLLTRNPASLLTVNNYFGVLQGVLHDLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ ++ P LV ++ VY YPE L+++ ++ AFR+F+ Sbjct: 237 ILPDYVTEEFPELVEVLHSDENSGVPVYLAYPEELRHSQRVSAFRDFV 284 >gi|56696748|ref|YP_167109.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678485|gb|AAV95151.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3] Length = 311 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 166/288 (57%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 11 MDWDKLRIFHAVADAGSLTHAGDRLNLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S + G+LR+ TT G L L YPD+ Sbjct: 71 GELLFDATKSMAKRLDAAAARIRDSEEEVFGELRVTTTFGFGTLWLAPRLAALYQKYPDL 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L+ + +D+ M AD AIR+++P Q + LI+++L+T+ M YA YL + P Sbjct: 131 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMTVEMKLYATRAYLDSAGTPQD 189 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I ++ H LI + V + S L VN+Y ++Q + GI Sbjct: 190 ISDISAHRLICQN---ISAAQVGASAVLVQHLLAYNPSSLLTVNNYFGVLQGVLHNLGIG 246 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P+L+ ++ D+ + VY YPE L+++ ++ AFR+F+ Sbjct: 247 VLPDYVTQDFPDLIHVLPDIKSALVPVYLAYPEELRHSQRVAAFRDFV 294 >gi|254466139|ref|ZP_05079550.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] gi|206687047|gb|EDZ47529.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] Length = 301 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 104/288 (36%), Positives = 169/288 (58%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 1 MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +LE +++S + G+LR+ TT+ G L L + YP++ Sbjct: 61 GELLFDATQSMSARLEAASARIRDSEEEVFGELRVTTTVGFGTLWLAPRLTKLYEQYPNL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + L++++L+T+ M YA P YL+ + Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLMTVRMGLYATPAYLEKHGNLET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++ +H LI + + + + + E S L VN+Y ++Q + GI Sbjct: 180 SADISQHRLICQNQ---RSAQVGSAAVLGKKLMAEDPASLLTVNNYFGVLQGVLHNLGIG 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ ++ P LV ++ D VY YPE L+++ ++ AFR+F+ Sbjct: 237 ILPDYVTEEFPQLVEVLPDEDQNEVPVYLAYPEELRHSQRVGAFRDFV 284 >gi|254441903|ref|ZP_05055395.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198250680|gb|EDY74996.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 309 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 104/288 (36%), Positives = 165/288 (57%), Gaps = 4/288 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS T A + LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 7 MDWDKLRIFHAVADAGSLTAAGDTLHLSQSAVSRQIRALEESLSTILFHRHARGLILTEQ 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +L+ +++S+ + G+L++ TT G L L YPD+ Sbjct: 67 GELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L+L+ + +D+ M AD AIR+++P Q + LI++KL+T+ M YA YL Sbjct: 127 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMTVRMRLYATQTYLDKIGGFDE 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++++ +H LI P + V + + + L VN+Y ++Q + GI Sbjct: 186 MEDIGRHRLICQS---PSAFQVAAGATLVGHLLSYDKPNLLYVNNYFGVLQAVLSNLGIG 242 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPDY+ +D P LVR++ ++ + VY +PE L+ + ++ AFR+F+ Sbjct: 243 VLPDYVTEDFPTLVRVLPEIESGEVPVYLAFPEELRQSKRITAFRDFV 290 >gi|89071184|ref|ZP_01158375.1| transcriptional regulator, LysR family protein [Oceanicola granulosus HTCC2516] gi|89043280|gb|EAR49506.1| transcriptional regulator, LysR family protein [Oceanicola granulosus HTCC2516] Length = 302 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 173/289 (59%), Gaps = 6/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKLR+F+ VA +GS T A + LHLSQS++SRQI LE + LF+RHARGL LTEQ Sbjct: 2 MDWDKLRIFHAVADAGSLTAAGDTLHLSQSAVSRQIRALEESLNTTLFHRHARGLILTEQ 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T + +LE +++S + G+L++ TTI G L L + +PD+ Sbjct: 62 GELLFDATRSMNKRLEAAAARIRDSEEEVFGELKVTTTIGFGTLWLAPRLVKLYEKFPDL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+ + +D+ M AD AIR+++P Q + LI+++L+++HM YA+ YL+ R P++ Sbjct: 122 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMRLYASADYLEG-RAPIN 179 Query: 183 -IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L +H L+ P + + + S L VN+Y ++Q G+ Sbjct: 180 EMDDLREHRLVCQN---PGSAQVSASASLTQSLLSHDLHSLLTVNNYFGVLQAVNNHLGV 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP+Y+V+D PNLVR++ +V + V+ YPE L+ + ++ AFR+F+ Sbjct: 237 GVLPNYVVEDFPNLVRVLPEVESAEVPVFLAYPEELRQSKRIAAFRDFV 285 >gi|114799877|ref|YP_761650.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114740051|gb|ABI78176.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC 15444] Length = 303 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 168/289 (58%), Gaps = 3/289 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW KLR F+ A SGS T A E+L +SQS++SRQI+ LE ++G+ LF RHARGL LT+ Sbjct: 1 MDWGKLRSFHAAAESGSLTLAGERLGISQSAVSRQIAALEEQLGVSLFQRHARGLVLTDS 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+R T E+ ++ L++ P G+L +A + G + L F+ +PD+ Sbjct: 61 GHTLYRSTMEMSSAAQSANTALRDQQETPQGELIVAAPVAFGSIWMVPRLGNFVKRHPDL 120 Query: 123 QIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ L LD++ + D+ A+CA+RL P + LIQRKL T+ + YA+P YLK P Sbjct: 121 RLDLRLDDQFEYDLLKLEAECAVRL-WPADKADLIQRKLGTLGTNLYASPEYLKAHGVPK 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q+LD H +I +GD E + V R PR + L+VN+ ++++ G GI Sbjct: 180 EPQDLDNHRIIAYGDESTPLFE-MAFACRVGRDDAPPRPATLKVNNVFAMLRAVDAGLGI 238 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A +PDY+ P LVR++ +V P F +YF YP L+ + ++ AFR F+ Sbjct: 239 ADVPDYMAATLPRLVRVLPEVTGPVFDLYFIYPSDLRRSKRVAAFREFL 287 >gi|126728661|ref|ZP_01744476.1| Transcriptional regulator, LysR family protein [Sagittula stellata E-37] gi|126710591|gb|EBA09642.1| Transcriptional regulator, LysR family protein [Sagittula stellata E-37] Length = 290 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 166/277 (59%), Gaps = 4/277 (1%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 +A +GS THA + LHLSQS++SRQ+ LE + LF+RHARGL LTEQG L TS + Sbjct: 1 MADAGSLTHAGDALHLSQSAVSRQVRALEEALNTTLFHRHARGLILTEQGELLFDATSSM 60 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 ++++ +++S + G+L++ TT G L L + YPD++I L+L+ + + Sbjct: 61 VKRIDSATARIRDSEEEVFGELKVTTTHGFGALWLAPRLTKLYEKYPDLKIDLMLEERVL 120 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ M AD AIR+++P Q + LI+++L++I M YA+P YL EP ++E+ H LI Sbjct: 121 DLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRMYASPDYLAEHGEPTRLEEMVTHRLIC 179 Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNP 253 P+ + + ++ + + L VN+Y ++Q + GI +LPDYI++D P Sbjct: 180 QKPGAPQVLAGEQLVQSL---LANDVQTTLTVNNYFGVLQATISNLGIGVLPDYIIEDFP 236 Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +VR++ D+ + V+ YPE L+ + ++ AFR+F+ Sbjct: 237 TMVRVLPDIESVEVPVFLAYPEELRQSKRVSAFRDFV 273 >gi|254460174|ref|ZP_05073590.1| transcriptional regulator, LysR family [Rhodobacterales bacterium HTCC2083] gi|206676763|gb|EDZ41250.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium HTCC2083] Length = 283 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 102/271 (37%), Positives = 161/271 (59%), Gaps = 4/271 (1%) Query: 20 FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79 THA + LHLSQS++SRQ+ GLE + LF+RHARGL LTEQG L T+ + +L+ Sbjct: 1 MTHAGDTLHLSQSAVSRQVRGLEESLNTTLFHRHARGLILTEQGELLFDATTAMIKRLDA 60 Query: 80 TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139 + +++S + G+LR+ TT G L L YPD++I L+L+ K +D+ M Sbjct: 61 AEARIKDSEEEVFGELRVTTTTGFGSLWLAPRLPHLYDKYPDLKIDLMLEEKVLDLPMRE 120 Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199 AD AIR+++P Q + LI+++L+T+HM YA+P Y+ P SI+++ LI P Sbjct: 121 ADVAIRMKEPSQ-ADLIRKRLMTVHMQLYASPDYVAQNGMPESIEDIGNRRLICQN---P 176 Query: 200 KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIM 259 + ++ L V + S L VN+Y ++Q + G GI +LPDY+ +D P LVRI+ Sbjct: 177 RTVQVGAGLQLVQHLLAYDVPSMLTVNNYFGVLQSVLHGLGIGVLPDYVTQDFPELVRIL 236 Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+ + V+ YPE L+ + +++ FR+F+ Sbjct: 237 PDLSSNEVPVFLAYPEELRQSKRIQVFRDFV 267 >gi|296116408|ref|ZP_06835022.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977001|gb|EFG83765.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] Length = 271 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 111/265 (41%), Positives = 152/265 (57%), Gaps = 2/265 (0%) Query: 27 LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86 L+LSQS++SRQIS LE + + LF+RHARGL LTEQG L++ EV+ KL TQ L E Sbjct: 2 LNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQGETLNQTVREVFSKLAMTQSLLTE 61 Query: 87 SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146 S K +G+LR+ TT G L L F+ PDI I LIL++ D+D+ M AD A+R+ Sbjct: 62 SKEKAAGRLRVTTTTGFGTCWLTPRLHRFMDTNPDISITLILEDNDLDLGMREADVAVRM 121 Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206 P Q LIQR L + YAA YL P +++EL+ H L+ FG P + N Sbjct: 122 HPPRQ-PDLIQRHLADFPLPIYAAQSYLNEHGTPTTLEELNAHKLVLFGGYHPP-VPHIN 179 Query: 207 WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPS 266 WLA P E R + L+VNS ++ G GI +P Y PNLV+I+ +V P+ Sbjct: 180 WLAETGVPSDERRQARLEVNSLAAMAGAIAAGIGIGSIPLYAANQYPNLVKILPEVPLPT 239 Query: 267 FTVYFCYPEALKNTGKLKAFRNFIF 291 YF YPE L+ + ++ FR+F+ Sbjct: 240 VDAYFVYPEELRTSKRVAVFRDFLL 264 >gi|86138825|ref|ZP_01057397.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] gi|85824472|gb|EAQ44675.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] Length = 307 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 167/284 (58%), Gaps = 4/284 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 KLR+F+ VA +GS THA ++L+LSQS++SRQ+ LE + LF+RHARGL LTEQG L Sbjct: 11 KLRIFHAVADAGSLTHAGDKLNLSQSAVSRQVRALEESLNATLFHRHARGLILTEQGELL 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 T + +LE +++S + G+LR+ TT G L L + YP+++I L Sbjct: 71 FDATKSMSTRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLFEQYPNLKIDL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+ + +D+ M AD AIR+++P Q + LI+++L+T+ M YA+ YL + P + +++ Sbjct: 131 MLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMTVQMKLYASRKYLDHNGTPEAAEDI 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H LI + + + V R + S L VN+Y ++Q + GI +LPD Sbjct: 190 KYHRLICQNQ---RSAQVGSASVLVQRLLTHNPGSLLTVNNYFGVLQGVLHDLGIGILPD 246 Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ +D P+LV ++ + VY YPE L+++ ++ AFR+F+ Sbjct: 247 YVTEDFPDLVEVLPNEENSVVPVYLAYPEELRHSQRVSAFRDFV 290 >gi|88861493|ref|ZP_01136115.1| probable transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88816508|gb|EAR26341.1| probable transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 230 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 145/230 (63%), Gaps = 1/230 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL++F+ VA + SFT A+ L+LSQS+ISRQI LE+++ ++LF RHARGL LTE Sbjct: 1 MDWDKLKIFHTVAEASSFTKASTILNLSQSAISRQIQALESDLKVQLFERHARGLVLTEN 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++ E+ KL+ + L K +GKL + T + G L +KEF+ L+PDI Sbjct: 61 GEYLYKSAHEIISKLKDVESNLSGHKDKLNGKLTVTTVVSFGTTWLTPRIKEFMDLHPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+LI D+K++D+S AD AIR+R+P Q +LIQ+K V + H Y + YL+ P + Sbjct: 121 EIELIFDDKELDLSTREADVAIRMRRPKQ-LNLIQKKFVDFNYHIYGSNDYLQKNGYPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 +++LDKH IT+G P + + +W+ G+ R S ++VNS ++ Sbjct: 180 LKDLDKHKFITYGKGAPSPVYNPDWVLKHGVKDGKKRKSIMKVNSVYGLL 229 >gi|46203491|ref|ZP_00051433.2| COG0583: Transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 226 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 144/224 (64%), Gaps = 1/224 (0%) Query: 76 KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135 +LE T+ L E+S +PSG LR+ TT+ LG + L + EFL LYPD++I+L+L N+++D+ Sbjct: 4 RLENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDVRIELVLTNEELDL 63 Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195 +M AD AIR+R+P Q LIQR+L T+H HA+A+P Y+K EP +I +LD+H L++FG Sbjct: 64 AMREADIAIRMRRPAQPD-LIQRRLFTVHYHAFASPDYVKRFGEPKTIADLDEHRLVSFG 122 Query: 196 DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNL 255 P + ++LA++ R + R VN+ ++ + G G+ +LPDY V N +L Sbjct: 123 GNEPSYLLATHYLASIGREGDDRRPVHFTVNNIAALHKAMEAGIGVGILPDYAVDGNESL 182 Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 V+++ + P+ Y Y E +++ +++AFR+F+ KA+ W + Sbjct: 183 VQVLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 226 >gi|163736580|ref|ZP_02143999.1| indolepyruvate ferredoxin oxidoreductase [Phaeobacter gallaeciensis BS107] gi|163742773|ref|ZP_02150158.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161384028|gb|EDQ08412.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161390450|gb|EDQ14800.1| HTH-type transcriptional regulator, LysR family [Phaeobacter gallaeciensis BS107] Length = 290 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 163/277 (58%), Gaps = 4/277 (1%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 +A +GS THA ++L+LSQS++SRQI LE + LF+RHARGL LTEQG L T + Sbjct: 1 MADAGSLTHAGDKLNLSQSAVSRQIRALEESLSSTLFHRHARGLILTEQGELLFDATKSM 60 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 +LE +++S + G+LR+ TT G L L + YPD++I L+L+ + + Sbjct: 61 SKRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLYEQYPDLKIDLMLEERVL 120 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ M AD AIR+++P Q + LI+++L+T+ M YA+ Y++ P +++ H LI Sbjct: 121 DLPMREADVAIRMKEPSQ-ADLIRKRLMTVQMKLYASRAYVERNGTPEQAEDIVDHRLIC 179 Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNP 253 P+ + + V + + S L VN+Y ++Q + GI +LPDY+ +D P Sbjct: 180 QN---PRSAQVGSAAVLVQKLMTHNPSSLLTVNNYFGVLQGVIHDLGIGVLPDYVTEDFP 236 Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LV ++++ T VY YPE L+++ ++ AFR+F+ Sbjct: 237 DLVPVLQEEDTSDVPVYLAYPEELRHSRRISAFRDFV 273 >gi|218508997|ref|ZP_03506875.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Brasil 5] Length = 175 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 82/142 (57%), Positives = 106/142 (74%), Gaps = 2/142 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWDKLR+F+ A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT Sbjct: 1 MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG L+R +V KLET +++L E++ PSGKLR+ TT+ LGQ L N++EFL LYP Sbjct: 61 EQGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDNIQEFLQLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADC 142 D+QIQLIL + ++A C Sbjct: 121 DVQIQLILRQR--GSGCEHAPC 140 >gi|3493654|gb|AAC33477.1| transcription activator [Azospirillum brasilense] Length = 278 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 117/191 (61%), Gaps = 3/191 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 KLRVF+ VA +GSFTHA E L+LSQS++S QI+ LE +G+ LF+R GL LT++G L Sbjct: 18 KLRVFHAVAEAGSFTHAGETLNLSQSAVSGQIARLEESLGVPLFHRTQSGLILTDEGELL 77 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 HR +V+ KL T+ L ES G LR+ TT+ + L + EFL +YPDIQ+ L Sbjct: 78 HRTARDVFAKLSMTEAMLTESRGASEGPLRVTTTVAFARTWLTPRVNEFLSIYPDIQLTL 137 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D+ ++D++M AD A P Q LIQR L+++H H YA YLK P +L Sbjct: 138 LIDDNELDLAMREADIASAWNTPRQ-PDLIQRHLMSVHFHLYAHQEYLKKRGVPKIPADL 196 Query: 187 D--KHNLITFG 195 D +H ++ G Sbjct: 197 DGLRHRRLSAG 207 >gi|197121404|ref|YP_002133355.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171253|gb|ACG72226.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K] Length = 300 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 152/293 (51%), Gaps = 10/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D D LRVF VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R R ++L+ Sbjct: 1 MDLDLLRVFAAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L+ + + H LE+ EL E +PSG LR+ +D+G L + L YP + Sbjct: 61 GTGLYDRIAPLLHGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L L ++ +D+ + D A+R+ ++ S+L+ RK + + +A+P YL P + Sbjct: 121 SVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRT 180 Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL+ H+ +TFG K +E V RI C ++ L + + G+GI Sbjct: 181 EAELEAHDWVTFGTQARKLRLEGARGTVEV---TPRSRILCPEL---LFVREAMRAGAGI 234 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LLP ++ + + LVR++ ++ +Y P K+ AFR+ + Sbjct: 235 GLLPSFMAEQDLAAGTLVRVLPRLVRTGGNLYVVTPATRHVPRKVSAFRDLVL 287 >gi|86157358|ref|YP_464143.1| LysR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773869|gb|ABC80706.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 300 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 152/293 (51%), Gaps = 10/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D D LRVF VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R R ++L+ Sbjct: 1 MDLDLLRVFAAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L+ + + LE+ EL E +PSG LR+ +D+G L + L YP + Sbjct: 61 GTGLYDRVAPLLQGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTTRYTLRYPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L L N+ +D+ + D A+R+ ++ S+L+ RK + + +A+P YL P + Sbjct: 121 SVELDLSNRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRA 180 Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL+ H+ +TFG K +E V RI C ++ L + + G+GI Sbjct: 181 ETELEAHDWVTFGTQARKLRLEGPRGTVEV---TPRSRILCPEL---LFVREAMRAGAGI 234 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LLP ++ + + LVR++ ++ +Y P + K+ AFR+ + Sbjct: 235 GLLPSFMAEQDLAAGTLVRVLPRLVRTGGNLYVVSPASRHVPRKVTAFRDLVL 287 >gi|220916101|ref|YP_002491405.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953955|gb|ACL64339.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 300 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 151/293 (51%), Gaps = 10/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D D LRVF VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R R ++L+ Sbjct: 1 MDLDLLRVFTAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L+ + + LE+ EL E +PSG LR+ +D+G L + L YP + Sbjct: 61 GTGLYDRIAPLLQGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L L ++ +D+ + D A+R+ ++ S+L+ RK + + +A+P YL P + Sbjct: 121 SVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRT 180 Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL+ H+ +TFG K +E V RI C ++ L + + G+GI Sbjct: 181 EVELEAHDWVTFGTQARKLRLEGARGTVEV---TPRSRILCPEL---LFVREAMRAGAGI 234 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LLP ++ + + LVR++ ++ +Y P K+ AFR+ + Sbjct: 235 GLLPSFMAEQDLAAGTLVRVLPRLVRSGGNLYVVTPATRHVPRKVSAFRDLVL 287 >gi|313201786|ref|YP_004040444.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gi|312441102|gb|ADQ85208.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 305 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 22/308 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L +F V GSF+ AA++LH+ +S++SR+++ LET++G +L R R LT+T Sbjct: 1 MKLEANDLLLFARVVDEGSFSRAADRLHIPKSTLSRRMAALETQLGERLLLRTTRKLTVT 60 Query: 61 EQGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 + G+ + H+VT+EV L T Q V+PSG+LR++ D G N+LQ L EF Sbjct: 61 DFGNAVLAHAHQVTAEVEATLALT----QHRQVEPSGRLRLSMPGDFGINILQALLAEFA 116 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 + YP I +++ + + +D+ + D AIR+ +SL R++ T YAAP YLK Sbjct: 117 MRYPAISLEMDISPRRVDLIGENFDLAIRMGDLPDDTSLAARRIATFETGLYAAPAYLKK 176 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQY 234 P + L +H+ + L+ + E W D+ G P I + NS +++ Sbjct: 177 RGTPHEPEALMEHDAL---HLLTRRGEPMLWQLKRDQAQWQGTP-IGKVSANSPAILVRM 232 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + G GIA+L + + LVRI+ED PS T + +P +L R +F Sbjct: 233 AISGLGIAMLGEPFAEPYVKAGELVRILEDWHLPSVTAWAVFP-----GRRLMPARTRVF 287 Query: 292 LKARDWKF 299 L A +F Sbjct: 288 LDALMARF 295 >gi|115380150|ref|ZP_01467182.1| LysR family transcriptional regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|310818714|ref|YP_003951072.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115362839|gb|EAU62042.1| LysR family transcriptional regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|309391786|gb|ADO69245.1| Transcriptional regulator, LysR family protein [Stigmatella aurantiaca DW4/3-1] Length = 304 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 157/293 (53%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +++ F V GSF+ AA +LH+ S++SRQ++ LE +G++L R R L LTE G Sbjct: 8 DLNQMLTFARVVARGSFSVAARELHVPPSTLSRQVASLERRIGLRLLERTTRKLRLTEAG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + S++ +E ++ S+ P G LR++ LG+ L L E++ LY D++ Sbjct: 68 ALYYERCSQIARDVEDADSTVRALSLTPRGTLRLSAPPVLGEMFLGPPLAEYVKLYRDMK 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L+++ +D+ + D A+R+ + SSL+ R+L A+P Y+++ P S+ Sbjct: 128 VELSLNSRRVDLVQEGFDLAMRVAVALDDSSLMARRLGVSTRLLCASPQYVRDHGTPASL 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSG 240 EL H I+ G E + +L I EPR+ +VNS +++ C+ G+G Sbjct: 188 AELPAHPTISIGS----GHEPWRFLDAKGEVIEVKVEPRV---EVNSSALVLELCLAGAG 240 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +AL+P ++ +LV+++ ++ T V +P + + K++AF + + Sbjct: 241 LALIPSFLAATRVAEGSLVQVLPEIRTRPLEVLLLFPSSRQLAPKVRAFLDVV 293 >gi|239817889|ref|YP_002946799.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239804466|gb|ACS21533.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 301 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 151/288 (52%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F VA GSF+HAA++L +S++++S+ ++ LET G++L R R ++LT+ G Sbjct: 5 DLIRTFREVASHGSFSHAAKKLDMSKATVSKYVAELETRFGVRLLNRSTRSVSLTDAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++ V +E TQ ELQE + +P G+LRI+ +G G L +F+ YPD+ I Sbjct: 65 LLERSTPVLEMVELTQAELQERARQPGGRLRISAPHGMGNGEFPGLLADFMRYYPDVSIS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L N+ +D++ + D IR P+ ++LI RKL+ + M A+P Y K +P ++ Sbjct: 125 LQLTNRTVDLAEEGIDVDIR-SGPVADANLIVRKLMLMEMVVCASPVYWKKHGKPGHPRD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H +T L + + F+ P+ P S + +++ + G G+ LP Sbjct: 184 LAAHEALTHSLLGAQPVWRFD---DGGEPLDVPVKSRMDCTEGAPLIRVAMRGFGVIYLP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V+ D+ LV +++ + Y + N+ L+A +F+ Sbjct: 241 SILVQSHIDHGELVPVLQGYARKDMWLSAAYLQRRHNSAALRALLDFL 288 >gi|253999813|ref|YP_003051876.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986492|gb|ACT51349.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4] Length = 305 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 160/308 (51%), Gaps = 22/308 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L +F V GSF+ AA++LH+ +S++SR+++ LET++G +L R R LT+T Sbjct: 1 MKLEANDLLLFARVVDEGSFSRAADRLHIPKSTLSRRMAALETQLGERLLLRTTRKLTVT 60 Query: 61 EQGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 + G+ + H+VT+EV L T Q V+PSG+LR++ D G ++LQ L EF Sbjct: 61 DFGNAVLAHAHQVTAEVEATLALT----QHRQVEPSGRLRLSMPGDFGIDILQALLAEFA 116 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 + YP I +++ + + +D+ + D AIR+ +SL R++ T YAAP YLK Sbjct: 117 MRYPAISLEMDISPRRVDLIGENFDLAIRMGDLPDDTSLAARRIATFETGLYAAPAYLKK 176 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQY 234 P + L +H+ + L+ + E W ++ G P I + NS +++ Sbjct: 177 RGTPHEPEALMEHDAL---HLLTRRGEPMLWQLKRNQAQWQGTP-IGKVSANSPAILVRM 232 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + G GIA+L + + LVRI+ED PS T + +P +L R +F Sbjct: 233 AISGLGIAMLGEPFAEPYVKAGELVRILEDWHLPSVTAWAVFP-----GRRLMPARTRVF 287 Query: 292 LKARDWKF 299 L A +F Sbjct: 288 LDALMARF 295 >gi|304310080|ref|YP_003809678.1| Transcriptional regulator, LysR family [gamma proteobacterium HdN1] gi|301795813|emb|CBL44012.1| Transcriptional regulator, LysR family [gamma proteobacterium HdN1] Length = 300 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 152/292 (52%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D++++ +F V +GS+T AA++L L +S++SR+I+ LE +G++L +R R + TE Sbjct: 2 IDYNEMAIFAKVVDAGSYTRAADKLDLPKSTVSRKITQLEERLGVRLLHRTTRAIKPTEI 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +R +++ + E Q + + +PSG LRI I G + L +KE+L +YP + Sbjct: 62 GKTYYRHCAQMLAEAEEAQRSINQMQAEPSGLLRITAPISFGASFLAETIKEYLAMYPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ ++LDNK +D+ D D A R+ P+ SSL+ R L +I + A+P Y++ P + Sbjct: 122 RVDIMLDNKILDLIDDEIDVAFRV-GPMSDSSLVARTLGSIRLILCASPVYVQAHGAPRT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I +L HN + ++ +W L + P+ + L N + + G GI Sbjct: 181 ISDLAGHNCVAHNNI--------SWHLVGPNGPVDVELDARLFSNDMEMTKRMLLAGYGI 232 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP + D L++++ + P VY Y + K+ AF +F+ Sbjct: 233 GLLPITLAYDEIQQGQLLQVLPEYHFPDRDVYLVYHSRRQLPTKVAAFIDFV 284 >gi|182679730|ref|YP_001833876.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635613|gb|ACB96387.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 316 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 5/288 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F V S SFT AAE L + +SS+S + LET VG +L +R R + T+ G+ Sbjct: 5 DLLRIFVRVVESASFTKAAETLGMPRSSVSTAVHDLETRVGARLLHRTTRHVAPTQDGNA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E T+ ++SS +P GKLRI G+ ++ L F LYP+++I+ Sbjct: 65 FFARCQRLIADYEETEGLFRQSSPRPRGKLRINVPGRFGRLIIAPALPGFFALYPEVEIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ D DCAIR+ P+ SSL+ RK+ + + A+P YL P +I+E Sbjct: 125 LGVTDRTVDLVQDGVDCAIRV-GPLMDSSLVARKIGDLVLINCASPRYLAAHGTPRNIEE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + + ++++ W+ + P S + VN+ +++ C+ G G+ +P Sbjct: 184 LRRHLAVNYLSPASGRIDEWEWVEN-GKIHSLPLPSQVTVNNADAMIACCLAGLGLIQIP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V LV +M D P + YP + +L+ F ++ Sbjct: 243 AYDVAVHLATGELVEVMPDHCAPPLPMTILYPHRHHVSRRLQVFIEWV 290 >gi|328470902|gb|EGF41813.1| transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 337 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 15/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+++ V G+FT A QL S S+IS+ IS LE ++G++L R R + LTE G Sbjct: 28 LKLYVSVVEQGNFTAVANQLGQSPSTISKAISRLEQDLGVRLINRTTRKVQLTEAGFSYL 87 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V L++++ +L +S PSG LR++ + GQ+ + + EF LYPD+++ + Sbjct: 88 ETARNVITTLKSSEEQLAQSIASPSGTLRVSLPLSFGQHYIAPLIPEFCHLYPDVKLDMS 147 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ DI + D AIR K + S+LI R+L I M +A+P Y+K P ++ L Sbjct: 148 FSDEYTDILENGTDIAIRSGK-LNDSNLIARRLCPIDMGMFASPEYIKEFGTPDHVEVLC 206 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H I + G L+P M FN + RP + + V++ ++ LG+GIA Sbjct: 207 QHKWILYRFKQSGRLLPLSM-SFNGQSIEIRPKHQ-----VTVDNGYAMAVLASLGAGIA 260 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +P Y+ +D LV + E T VY YP K+K F +IF K ++ Sbjct: 261 YMPHYLARDLVYEGKLVLVSEPQRTEDQAVYLYYPSREFVPAKVKVFIEYIFQKLKE 317 >gi|332307314|ref|YP_004435165.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174643|gb|AEE23897.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 288 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 150/289 (51%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA + SFT A++ L +S + +SRQIS LET + +KLFYR R ++LTE+G Sbjct: 3 WEGINEFVYVAETESFTQASKNLAISTAQVSRQISALETRLNVKLFYRTTRKVSLTEEGR 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ V LE + + KP G +R+ + G+ + + +F+LLYPD+++ Sbjct: 63 LFYQHCRSVLDGLEAAERAITNLQSKPQGTIRLTAPVTYGEQQILPLVNDFMLLYPDVEV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ ID+ D AIRL K + SS++ +KL T A+P YL P S+ Sbjct: 123 SAYLSNQKIDLVEQGYDLAIRLGK-LSDSSMMAKKLATRTNSVCASPEYLAKYGFPHSLS 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL+KH+ + G L D N + R G L+ NS S++ + G GI L Sbjct: 182 ELNKHSCL-LGTLDYWHFRDENKERNI-RVKGR-----LRYNSGFSLVDAALKGLGIVQL 234 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ ++ LV ++++ ++ YP + K+++ +++ Sbjct: 235 PDYYVQEHIESGALVSLLDNYRESEEGIWAIYPRNRHLSPKIRSLVDYL 283 >gi|85703096|ref|ZP_01034200.1| regulatory protein, LysR:LysR, substrate-binding [Roseovarius sp. 217] gi|85672024|gb|EAQ26881.1| regulatory protein, LysR:LysR, substrate-binding [Roseovarius sp. 217] Length = 306 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 15/290 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF VA +GSF AA +L LS +++R ++ LE +G ++F R R +T+T+ G + Sbjct: 6 EIEVFIAVAEAGSFARAATRLRLSPPAVTRAVAALEDRLGARVFNRTTRSVTITDVGRRF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V LE+ + E + P G L + ++ G+ L + EFL LYP + + + Sbjct: 66 LESARRVVSDLESAEREALGEAATPQGHLTVTASVTFGRAALAPLVCEFLALYPRVTVSV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D A R+ P+ S L+ RK+ T+H A+P YL P++ +L Sbjct: 126 LLLDRVVNLVEEGVDVAARI-GPLPDSGLMARKVGTVHRILVASPAYLVARGVPMTPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242 H ++ F L+P + W IG PR ++N + ++ VLG GI Sbjct: 185 RDHAVVGFTGLMP----NREWRYVNGSKIGSVALHPR---FEINDAATAIEAAVLGHGIT 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + Y+V D LV +++ P V+ YPE K++AF +F Sbjct: 238 IALSYMVADLIHAGRLVPVLQAYTLPPQPVHLVYPETRLVAPKIRAFLDF 287 >gi|212636087|ref|YP_002312612.1| LysR family transcriptional regulator [Shewanella piezotolerans WP3] gi|212557571|gb|ACJ30025.1| Transcriptional regulator, LysR family [Shewanella piezotolerans WP3] Length = 295 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 10/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF V SGSFT AAE+ L +S+ISR+++ LE ++GIKL R R LTE G Sbjct: 3 DLNDMMVFATVVNSGSFTAAAEEFGLPKSNISRKVTRLEDKLGIKLLERSTRSQHLTEIG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +++ + ++ P G L+I +I +GQ LL +L F YP++ Sbjct: 63 QVYFEYCQRIMDEIQGAEESVEGLMSAPRGTLKICASITVGQCLLSPHLAPFKKAYPEVH 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS- 182 + + L N+ +D+ + D AIR+ ++ SSLI ++L + +A+P YL PL+ Sbjct: 123 LDIHLTNRRVDLIEEGFDAAIRV-GTLEDSSLIAKRLCKRELFLFASPDYLATSNIPLAE 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H+ + PK I P I C + + + Q + G+GI Sbjct: 182 PSDLKQHDCLFMSATNPKPQWHLKSGKESQTIIIAPTIRC---DDFTVLRQLAIDGAGIT 238 Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP YI VKD LVR+++ I+ S +Y YP T KL+ F +++ Sbjct: 239 KLPSYICEKAVKDG-KLVRVLDQWISESVDIYALYPSHKGATPKLRVFLDYL 289 >gi|153006479|ref|YP_001380804.1| LysR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030052|gb|ABS27820.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. Fw109-5] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L +F VAR+ SF+ AA++L + +SS SR ++ LE E+G +L +R R ++LT Sbjct: 1 MDLNLLTLFEAVARTSSFSAAAKELGIPKSSASRGVARLEGELGAQLLFRTTRQVSLTAT 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L+ + + ++ EL E PSG L++ +DLG L L + YP + Sbjct: 61 GTALYDRVTPLLRSVKAALGELPEREEAPSGTLKLTAPVDLGVLFLAEVLTRYTARYPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L + +D+ + D A+R ++ SSLI R+ + YA+P YL P + Sbjct: 121 SVDLHLTGRVVDLVAEGFDVALRAASKLEDSSLIVRRAAAVVFQLYASPLYLSRRGTPRT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240 ELD H+ I F K T RP+ PRI C + L + G+G Sbjct: 181 EDELDAHDWIVFRGGPQKLR------ITGPRPVPAHPPRIVC---DDLLFVRDAVRSGAG 231 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295 I LLP ++ + + LVRI+ + ++Y P A K+ AFR+ + LK R Sbjct: 232 IGLLPTFVAEPDVLAGTLVRIVPRFERSAGSMYIVTPSAKHVPRKVTAFRDLVLEMLKTR 291 >gi|294671297|ref|ZP_06736149.1| hypothetical protein NEIELOOT_03006 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307024|gb|EFE48267.1| hypothetical protein NEIELOOT_03006 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 297 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 147/297 (49%), Gaps = 19/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V R GSFT AA++L +S + S+ IS LE +G KL R++R L LTE G++ H Sbjct: 7 LKVFREVVRQGSFTRAADKLGISTAMASKHISHLENHIGAKLLQRNSRNLYLTEAGAEYH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R LET + KP G LR+ + + + L E+ LYP + + LI Sbjct: 67 RECGYALETLETAAERAAGGTEKPQGLLRVTMPMWFANHHVCSWLAEYCHLYPAVSLDLI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ ID+ + D A+R+ +LI R L I + YL+ P + QE+ Sbjct: 127 LDNRKIDLVAEGVDLALRVSSVDLPPTLIFRPLSEIAFYLIGETEYLQRHGTPATPQEIL 186 Query: 188 KHNLI--TFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 HN + ++ D+ + + E FN + S ++ ++ + + + G G+ Sbjct: 187 THNFVQASYVDMEHIKLSRDGEHFNLVPN----------STIRADNTPMVREMVLAGGGL 236 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP + VK D+ LVR++ + PS T+Y Y + + K+++F +F+ K R Sbjct: 237 GYLPAWTVKRDLDSGRLVRLLPEWRIPSATLYAAYADRAFLSAKIRSFIDFLVEKIR 293 >gi|148258402|ref|YP_001242987.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410575|gb|ABQ39081.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 297 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 13/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LR F V SGSF A QL LS+S+IS+ I LE +G++L R R + TE G Sbjct: 6 SLRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEASLGVQLIVRTTRHASPTEAGQLY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +L+ + +S P G LR+ + G L + EF+L YP++Q+Q+ Sbjct: 66 FERAVVILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVAEFMLRYPELQLQI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L + +D D D +R+ + ++SSSL+ RK++ + AAP YL P S ++L Sbjct: 126 VLSDDLLDPVQDGFDVTLRIAE-LESSSLVARKIMPVERVICAAPAYLAQHGTPASPEQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIAL 243 +H +T+G L + W T P G+ I L VN+ + + G GIAL Sbjct: 185 RRHTSLTYGFL----LTGNQWKLT--GPDGDHWIQPAWSLCVNNAEVLRDVAIKGQGIAL 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +I D + L I+ D P +Y YP + K++ F +F+ Sbjct: 239 IPRFIAADALESGALTAILADYTAPPLALYAIYPPTRHLSVKVRLFIDFL 288 >gi|119898891|ref|YP_934104.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119671304|emb|CAL95217.1| transcriptional regulator, LysR family,putative [Azoarcus sp. BH72] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 142/280 (50%), Gaps = 6/280 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F + GSF AA L LS S++++ ++ LE ++G++LF+R R + LT +G +L++ Sbjct: 9 AFVETVKRGSFAAAARSLGLSASTVAKSVARLEADLGLRLFHRSTRQVVLTTEGEELYQR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S + ++E E + +PSG LR++ + LG+ + L E +P + ++L L Sbjct: 69 CSRIADEIEALHDEAAGARARPSGTLRLSAPVVLGRQRVVPALAELRRRHPQLGVELELA 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D D A+R+ P+ S+L R++ H+ AAP YL P + +EL H Sbjct: 129 DRQVDVLADRLDGALRV-GPLADSALAARRVGEHHIVTVAAPAYLARRGTPGTPEELAPH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + F + + V +G+ + L +N +++ G G+A +PDY+V Sbjct: 188 DCLLFRSPSSGRTRPWAFAGGVTATLGD--AATLAINDGEALVAAACAGMGLAQVPDYMV 245 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + LV ++ D P + YP A + +L+AF Sbjct: 246 AEAIARGALVEVLADRRPPPLPISLVYPSARQPPPRLRAF 285 >gi|304320745|ref|YP_003854388.1| putative LysR family transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303299647|gb|ADM09246.1| putative transcriptional regulator, LysR family protein [Parvularcula bermudensis HTCC2503] Length = 295 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 22/292 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA +GSF A +L +++S++S++I LE ++G+KLF R R +TLTE G + Sbjct: 1 MFVAVAEAGSFAGAGRKLGVTKSAVSKRIGQLEAQLGVKLFTRSTRAMTLTEAGERYRAH 60 Query: 70 TS---EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E + E LQ+S P+G+L+I + G+ + + FLL +PDI+ L Sbjct: 61 AALALEAGKQAEDAATALQDS---PAGRLQILAPMSFGRLHIAPLMAGFLLEFPDIEADL 117 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ D A+R + + S +LI RKL +H A+P YL + P + +L Sbjct: 118 ALDDRHLDLVEQGFDVAVRAGQ-LHSPTLITRKLTDLHSVLCASPEYLASHAPPRAPADL 176 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSGI 241 DKHN + F + +W + +P GEP + SY ++M + G GI Sbjct: 177 DKHNCLHFA----HASDAHHW--SFRKP-GEPTVRVETRGSYQTSNSEALMDAVLGGLGI 229 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LP +I L ++ D PS + YPE K++AF +FI Sbjct: 230 ARLPTFIAGPAIAQGQLHHLLSDFEMPSQPLSVIYPERRYLPVKVRAFTDFI 281 >gi|87122530|ref|ZP_01078409.1| Putative transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86162172|gb|EAQ63458.1| Putative transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 298 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 147/286 (51%), Gaps = 17/286 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F V R GSF+ AAE+LH+S S ISR +S LE + L +R R + L+E GS Sbjct: 4 WDGIEAFVEVVRQGSFSAAAEKLHVSASHISRLVSQLEKRLDATLLFRTTRSIRLSEAGS 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ S++ +++ + + + P G LRI+ G+ + + +FL+ +P IQ+ Sbjct: 64 LYYQQCSQLLDSIDSAEEMVTSLNQSPVGHLRISCATTFGERFIAPRVNDFLINHPKIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L N+++D+ + D AIRL ++SSSL+ R+L + A+ HY+ P ++ Sbjct: 124 DLHLTNREVDLIDEGYDLAIRL-GTLKSSSLLARRLCDRVEYVCASAHYIARFGMPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 EL KH KC++ W D+ E +I + NS +++ + G GI Sbjct: 183 ELSKH----------KCLQGSKDVWTFMQDKQKREVKIHGNWRSNSGPALLDATLKGLGI 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 A LPDY V + L+ I+ P V+ YP+A + + KLK Sbjct: 233 AQLPDYYVAPYIASGELIPILSQYQYPYTGVWLVYPKARQQSPKLK 278 >gi|149190046|ref|ZP_01868323.1| putative transcriptional regulator [Vibrio shilonii AK1] gi|148836076|gb|EDL53036.1| putative transcriptional regulator [Vibrio shilonii AK1] Length = 294 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 154/293 (52%), Gaps = 17/293 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F V + SFT AA++L S ++ISR+++ LE ++G+KLF R R +++TE G Sbjct: 3 NWEGINEFVAVVETQSFTGAADRLATSVANISRRVNALEEKLGVKLFVRTTRKVSVTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + L ++ + + P GK+++ + G+ +L + EFLL++P I+ Sbjct: 63 ATYYQHCKPLVDGLALAELAITQLQSTPKGKIKMTAPVTFGEQVLAPLMHEFLLIHPQIE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LIL N+ +++ + D A+RL + ++ SS++ RKL+ HM A+P YL+N EP ++ Sbjct: 123 LDLILSNQKMNLVEEGFDLAVRLGR-LEDSSMMARKLLDRHMFVCASPTYLENHGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 EL +H+ C+ D E I +Q NS +++ + G G Sbjct: 182 SELKRHS----------CLRGSTKYWRFDEKGSERLIHVEGRVQCNSGYALVDAALKGLG 231 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LPDY V+ + LV ++ ++ YP+ T K++ +++ Sbjct: 232 IVQLPDYYVQPYLEAGELVEVLTPYRGDREGIWALYPQNRMLTSKVRTLIDYL 284 >gi|330445258|ref|ZP_08308910.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489449|dbj|GAA03407.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 296 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 150/291 (51%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F W+ + F VA + SFT A+++L +S + +SRQ+S LE + KLFYR R ++LTE+ Sbjct: 2 FQWEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS ++ +V LE + L P G +++ + G+ + + +F+L YP++ Sbjct: 62 GSVYYQHCRQVLDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L N+ +D+ D AIRL + + SSS++ ++L T M+ A+P YL P S Sbjct: 122 EVNIDLTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTTRTMYVCASPAYLAKFGVPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL HN + G+L ++ +V R G L NS + + G GIA Sbjct: 181 LSELRHHNCL-IGNLDHWRFQESGKEKSV-RVTGN-----LNCNSGYGLRDAVLKGIGIA 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY + D+ +V I+ + P ++ YP + K++ +F+ Sbjct: 234 QLPDYYIDKDLDSGEIVPILTNYQEPEEGIWALYPHNRHLSPKVRMLVDFL 284 >gi|317491434|ref|ZP_07949870.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920981|gb|EFV42304.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 299 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 7/289 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD LR F VAR+GS T +A +L +SQS++SR+IS LE ++ LF RHA G LT+ Sbjct: 3 NINWDDLRYFLSVARTGSLTGSAAELQVSQSTVSRRISALEQDLNTTLFARHATGYFLTD 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG + R S V + I L + G +R+AT L N++ +L EF+ YP Sbjct: 63 QGRDVLRKVSAVEDSITALHIGLADLDANTEGTIRLATPESLAVNMIIPSLPEFISRYPK 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++++I D+S AD AIRL +P QS +LI ++L T++ YA+ YL+ R P Sbjct: 123 LRLEIISGVGVADLSRYEADLAIRLVRP-QSGNLIMQRLGTMNSAIYASADYLQ--RHPA 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + D + +WLA I+ Y + G G+ Sbjct: 180 PSSDPTSGRAFIIWDRAYSHLPTASWLAKQGYDANPALITSSVAEQYAAAKS----GIGL 235 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ALLP ++V + +++ ++ + S ++ L+++ +++A F+ Sbjct: 236 ALLPSFLVAHDADMIEVIPNNQVFSEDLWLTTHADLRSSVRIRAISEFL 284 >gi|294139319|ref|YP_003555297.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293325788|dbj|BAJ00519.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 295 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V ++GSFT AAE L L +S+ISR+++ LET +G++L R R + LTE G Sbjct: 5 NDMLVFAEVIKAGSFTKAAEVLDLPKSNISRKLTRLETHLGVRLIERTTRSIHLTEVGQI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E+ ++ + P G+L+I ++ +GQ ++ NL F+ LYPDI + Sbjct: 65 YLQHCQRIQEEVESAELCVDHLVESPRGQLKICVSVTMGQQIISRNLCRFIALYPDIDVT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L N+ ID+ + D AIR+ K ++ SSLI + L I A+P P E Sbjct: 125 LELTNRRIDLIEEGFDLAIRIGK-LEDSSLIAKYLGQIERKLCASPALFNLYALPSIPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L + +PK WL + + + ++ +QVN +LS+ Q C+ G GI +L Sbjct: 184 LSLLPSLFMTSGMPK----NQWLLSREDLVESVHLAPKIQVNDFLSLSQLCISGCGITML 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y+ + +L+ I+ + VY YP T K++A NF+ Sbjct: 240 PAYLCDEAIIEGSLLHILPEWQCEQSNVYALYPSHKSVTPKVRAMLNFL 288 >gi|186472734|ref|YP_001860076.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195066|gb|ACC73030.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 296 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 152/299 (50%), Gaps = 19/299 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F + +FT AA +L LS+ +SR++ LE +G++L R+ R L +T+ G + Sbjct: 4 DDLKIFVTTVDARNFTAAANRLQLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGYE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ + + ++E + + P G LR++ + G L + FL PD+++ Sbjct: 64 LYQRATRILGEVEDAEQAMTSGRSDPRGLLRVSAPMSFGMIHLSPLVAAFLRANPDVRVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R+ + S+LI +KL I M A +P Y K R P + + Sbjct: 124 MELSDRVVDVVGEGFDMALRI-GTLADSTLIAQKLAEIRMVACCSPAYRKARRPPATPGD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241 L +H + +G W VD G R L+VN+ I + G GI Sbjct: 183 LARHACLLYGQ-----EGRSGWEYMVD---GASRTIEVHGPLRVNNGEVIRDAAIAGLGI 234 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 A LP++IV + + LV ++ D ++P T+Y YP+ + + ++AF F+ F+KA Sbjct: 235 ARLPEFIVAEALASGKLVEVLGDFVSPPLTLYAVYPQHRQASITIRAFTQFLRDRFVKA 293 >gi|149908568|ref|ZP_01897230.1| Putative transcriptional regulator, LysR family [Moritella sp. PE36] gi|149808402|gb|EDM68339.1| Putative transcriptional regulator, LysR family [Moritella sp. PE36] Length = 294 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 150/294 (51%), Gaps = 13/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW + F VA + SFT A ++L +S + +SRQIS LE + KLFYR R +++TE G Sbjct: 3 DWSGVSEFVAVAETESFTAAGKRLGISTAQVSRQISALEERLSAKLFYRTTRKVSVTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +V L + + P GKL+I I G+ + + +F+ YP+++ Sbjct: 63 GIYYQHCRQVMDGLADAERAITNLQSTPKGKLKITAPITYGERSVAPLVNDFVTQYPELE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L N+ ID+ + D AIRL + + S++I ++L T + AAP YL P ++ Sbjct: 123 VQLVLSNQQIDLIDEGFDLAIRLGQ-LGDSTMIGKRLATRKQYVCAAPEYLSAFGAPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 ELD+HN ++ G L D+ W R+ NS ++ + G GI Sbjct: 182 SELDRHNCLS-GTL------DY-WRFQEKGKARNIRVKGNFSCNSGPVLVDAALKGMGIV 233 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LPDY V+++ N L+ ++ + P V+ YP+ + K++ +++ K Sbjct: 234 QLPDYYVQEHINQGQLIELLPNYREPDDAVWALYPQNRHLSPKVRMLVDYLAKK 287 >gi|149376176|ref|ZP_01893941.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] gi|149359581|gb|EDM48040.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] Length = 296 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 151/291 (51%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + W+ + F VA +G+FT AA++L +S + +SRQIS LET + +LFYR R ++ TE Sbjct: 2 YHWEGVNEFVAVAETGNFTRAAKRLGISTAQVSRQISALETRLSTRLFYRTTRRVSATEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + + + P G+L++ + G+ + L +F++ YP++ Sbjct: 62 GEIYYQHCRQVLEALEEAERSITNMQLVPRGRLKLTAPVTYGEKSIAPLLNDFVMRYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ L N+ +D+ + D A+RL K ++ S+L+ R+L + ++ A+P YL P S Sbjct: 122 EVEVNLTNQTLDLVAEGYDLAVRLGK-LEDSTLMARRLASRTLYVCASPAYLSARGTPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL HN + G+L D+ +P ++ +S +++ + G GI Sbjct: 181 LSELAHHNCL-LGNL------DYWRFQEAGQPRNVRVSGNIRCDSGRALLDAALKGIGIV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY VK D+ LV ++ ++ YP + K++ +F Sbjct: 234 QLPDYYVKRALDSGALVPLLTHYQEDDDGIWAVYPHNRHLSPKVRMLLDFF 284 >gi|157960732|ref|YP_001500766.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845732|gb|ABV86231.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 302 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 149/286 (52%), Gaps = 4/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V ++GSF+ AA + +Q++IS++++ LE+ +G KL R +R L+LTE G+ Sbjct: 7 MKAFVRVVQTGSFSAAAREQSSTQATISKKVAALESLLGAKLLTRSSRELSLTEVGAVYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ Q +++ P G LR+A + G + L EFL+ YP+I++ L+ Sbjct: 67 ENCVAIIAELDEAQAQVRSQQASPKGILRVAAPVVFGCQFIAPILGEFLIRYPEIKVDLM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +K +D+ + D AIR ++ ++ SSL+ R L + A+P YLK +P QEL Sbjct: 127 LSDKHVDLVAEGVDLAIRAKQ-LEDSSLVARHLFDNPLITVASPEYLKRFTQPKEPQELR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN I + L + F I P + ++ +I+Q + G GIA LP + Sbjct: 186 AHNCIVYSMLKSVNIWHFEQAKGGGDKISVPVGGNCRCDNGEAILQLALDGVGIAQLPTW 245 Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V + N L R+M + ++ YP++ K++ F +++ Sbjct: 246 MVDKHINQGKLQRMMPNYLSHPLPFNAIYPQSRYVPLKVRCFIDYL 291 >gi|90577393|ref|ZP_01233204.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] gi|90440479|gb|EAS65659.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] Length = 299 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 154/302 (50%), Gaps = 21/302 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63 + + +F V GSF+ A+ +L +++S++S++IS LET +G KL R R L+LTE G Sbjct: 4 FSTIPIFTAVVELGSFSEASRKLGITKSAVSKRISTLETHLGAKLIQRTTRKLSLTEAGE 63 Query: 64 ---SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 S +HR S V ++ E LQ S P G L+++ + G+ + L EFL LYP Sbjct: 64 QYYSYIHRAKSLV-NEGEDAISSLQGS---PKGHLKVSVPMVFGELHIAPLLSEFLRLYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI++ L +D+K +D+ D D +R+ + S+L+ RKL H A+P YL+ P Sbjct: 120 DIKLNLSMDDKVVDLVKDGLDMTLRI-GALSDSNLVARKLSPCHSVLCASPGYLEKYGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +I +L +HN + + W T P G RI +QVN+ + Q + Sbjct: 179 TAINDLKQHNCLYYSYF----RSGIEW--TFYGPNGLERIKPEGNIQVNNSNVLKQLMLD 232 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GI +P ++V+ DN L+ I+E P +Y YPE KLK F +++ K Sbjct: 233 DIGICQMPLFLVEHEIDNGTLMPILEQYQLPEHGIYAVYPERAFMPAKLKVFLDYLEQKL 292 Query: 295 RD 296 D Sbjct: 293 SD 294 >gi|260574901|ref|ZP_05842903.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2] gi|259022906|gb|EEW26200.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2] Length = 301 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 143/297 (48%), Gaps = 14/297 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G NLL L +FLL YPDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNLLSPILGDFLLEYPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ ++ SSL RKL A+P Y + P+ I +L Sbjct: 126 VLNNRYVELISEGFDLAIRVGD-LEDSSLRARKLTETSKRMIASPSYFQRFGRPMKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R + L VN S++ V G GIA Sbjct: 185 NDHKLLHYSNQANGNV----WKITA--PSGEKRQVRSVGWLTVNDGQSLLNAAVSGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP ++ + ++ E + + +Y YP K++AF +F+ + D Sbjct: 239 YLPSFLCAEAMKAGQVEEAIPGLPVETLGIYAVYPPGRFTQPKVRAFIDFLARRYTD 295 >gi|260779006|ref|ZP_05887898.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260605170|gb|EEX31465.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 283 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 149/282 (52%), Gaps = 13/282 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V GSFT AAE L+ +S+ISR+I+ LE+++G++L R R L LTE G + ++ Sbjct: 2 VFATVVERGSFTQAAEALNTPKSNISRKITRLESQLGVRLLERSTRTLHLTEIGQRYYQY 61 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + E ++ KP G+LR+ T++ +GQ+LL +L E+ YPD+++ L L Sbjct: 62 CKRIKEEYEAAGSAVESMLEKPQGRLRVCTSLGVGQSLLGDHLAEYCRHYPDVELDLSLT 121 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +D+ + D A R+ + S LI +KL +I++ YAAP + K+ S +L KH Sbjct: 122 NRRVDLIEEGYDLAFRV-GDLPDSGLIAKKLCSINLRLYAAPSFAKHRINTPS--DLLKH 178 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 L+ + D++ V++ EP + C + + +M+ + G GI LP+Y Sbjct: 179 PLMLMS--AKERSPDWHLRCGVEKTALRFEPNVRC---DDFSMLMRMAIKGLGITELPEY 233 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + K L+ I+ D +Y YP +T K++A Sbjct: 234 MAKRELAEGTLINILPDWQFEPVDLYALYPSHRGSTPKVRAL 275 >gi|104783172|ref|YP_609670.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112159|emb|CAK16886.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 300 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 15/280 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS W+ + F VA SG FT AAE+L +S S ISRQI+ LE + +L YR R +TL+ Sbjct: 1 MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + E + + + +P G LR+ + G+ + + F+ LYP Sbjct: 61 EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++++ L N+ +D+ + D AIRL + +Q S L+ +L M+ A+P YL+ P Sbjct: 121 QLRVEVELSNRTLDLLHEGMDLAIRLGR-LQDSRLVATRLAPRRMYLCASPAYLERYGRP 179 Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238 S+ EL +HN L+ DL W D R I + + NS +++ + G Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPE 275 G+ LPDY V ++ N LV ++E P+ V+ YP+ Sbjct: 231 MGLCQLPDYYVLEHLNTGALVSLLEGHQPPNTAVWALYPQ 270 >gi|153006496|ref|YP_001380821.1| LysR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030069|gb|ABS27837.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. Fw109-5] Length = 342 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 144/293 (49%), Gaps = 7/293 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF VA +GSF A +L +S +++R ++ LE +G++LF R R L LTE G + Sbjct: 19 EMEVFVAVADAGSFAKAGARLRISPPAVTRAVASLERRLGVRLFNRTTRSLRLTEAGLRF 78 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE + E S PSG L + T++ G++ + + EFL +P + L Sbjct: 79 LESAKPLLGDLEEAEREAAGDSAAPSGHLTVTTSVTFGRSAMAPVVTEFLRNHPRVTASL 138 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D A+R+ + + SSL+ R++ + A+P YL P S EL Sbjct: 139 MLVDRVVNLVEEGIDVAVRIGQ-LPDSSLVARRIGEVQRVLVASPEYLAKHGAPASPAEL 197 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H++I F L+P F A R +PR +VN + ++ G GI + P Sbjct: 198 KRHSVIAFTGLMPNREWRFVDGAESSRIAVQPR---FEVNDAFAALEAAEAGDGITISPS 254 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +IV + L ++ P +V +P++ K++AF F + +D Sbjct: 255 FIVAERIAAGRLAPVLAAYTAPPVSVQLVHPQSRLVAPKVRAFVEFAGPRLKD 307 >gi|167622897|ref|YP_001673191.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352919|gb|ABZ75532.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 302 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 147/286 (51%), Gaps = 4/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +SGSF+ AA + + +Q++IS++++ LE+++G KL R +R ++TE G+ + Sbjct: 7 MRAFIRVVQSGSFSAAAREQNTTQATISKKVAALESQLGAKLLTRSSRENSMTEVGAVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + +++ P G LR+A I G + L FL YP+I++ L+ Sbjct: 67 ESCVAIIGELDEAEAQVRSQQASPKGVLRVAAPIVFGCQFIAPFLSHFLECYPEIKVDLM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +K +D+ + D AIR ++ ++ SSLI R L M A+P YLK EP QEL Sbjct: 127 LSDKHVDLIAEGVDVAIRAKQ-LEDSSLIARHLFDNPMVVVASPDYLKRFGEPKEPQELR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN I + L + F D I P + ++ +I+Q + G G+ LP + Sbjct: 186 SHNCIVYSMLKSVNIWHFEQAKESDDKISVPVSGNCRCDNGEAILQLALDGLGVVQLPIW 245 Query: 248 IVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V ++ + R ++ + I YP++ K + F +++ Sbjct: 246 MVDEHVKVGRLKVLLSNYIAKPLPFNAIYPQSRYVPLKARCFIDYL 291 >gi|269103262|ref|ZP_06155959.1| transcriptional regulator LysR family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163160|gb|EEZ41656.1| transcriptional regulator LysR family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 295 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 151/292 (51%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F W+ + F V+ + SFT AA+++ +S + +SRQIS LE + KLFYR R ++LTE+ Sbjct: 2 FLWEGVTEFVAVSETESFTAAAKKIGISTAQVSRQISALENRLNTKLFYRTTRKVSLTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS +R +V LE + + P G +++ + G+ + + +F+L YP+I Sbjct: 62 GSIYYRHCRQVMDGLEEAERAITSLRGVPQGLIKMTAPVTYGEKYIVPLVNDFMLQYPEI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L N+ +D+ D AIRL K + +SS++ ++L T M+ A+P YL+ P + Sbjct: 122 EVAMDLTNRQMDLVEGAFDLAIRLGK-LGNSSMMAKRLTTRTMYLCASPAYLEKYGMPHT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241 + EL HN + G+ D+ W RI+ L NS + + G GI Sbjct: 181 LSELRHHNCL-IGN------HDY-WRFQEKGKEKSIRIAGSLSCNSGYGLRDAVIKGIGI 232 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LP+Y V + N ++V I+E P ++ YP + K++ +F+ Sbjct: 233 AQLPEYYVDEDLANGSIVPILEKFQEPDEGIWALYPHNRHLSPKVRLLVDFL 284 >gi|319796234|ref|YP_004157874.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598697|gb|ADU39763.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 300 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 155/301 (51%), Gaps = 21/301 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F VA GSF+ AA++L +S++++S+ ++ LET G++L R R ++LT+ G Sbjct: 5 DLIRTFREVAAHGSFSQAAKKLDMSKATVSKYVAELETRFGVRLLNRSTRSVSLTDAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++ V +E TQ ELQ+ + +P+G+LRI+ +G L +F+ YPD+ I Sbjct: 65 LLDRSTPVLEMVELTQAELQDRASQPAGRLRISAPHGMGNGEFPNLLADFMRYYPDVSIS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L N+ +D++ + D IR P++ ++LI RKL + M A+P Y K +P ++ Sbjct: 125 LQLTNRTVDLAEEGIDVDIR-SGPVEDANLIVRKLRLMQMVVCASPVYWKKHGKPEHPRD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCVLG 238 L H +T L + + F+ GEP R+ C + +++ + G Sbjct: 184 LAGHEALTHSLLGAQPVWRFD-------DGGEPLDVHVKSRMDCTE---GAPLIRVAMRG 233 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+ LP +V+ ++ LV +++D + Y + N+ L+A +F+ + Sbjct: 234 FGVIYLPSILVQSHIEHGELVPVLQDYTRKDMWLSAAYLQRRHNSAALRALLDFLQTRVG 293 Query: 296 D 296 D Sbjct: 294 D 294 >gi|260429586|ref|ZP_05783563.1| LysR substrate binding domain protein [Citreicella sp. SE45] gi|260420209|gb|EEX13462.1| LysR substrate binding domain protein [Citreicella sp. SE45] Length = 307 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 141/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 12 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL +PDI + + Sbjct: 72 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAAFPDITVNM 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 132 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIASPAYFQKFGRPARIDDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + W T P GE R L VN S++ C+ G GIA Sbjct: 191 NEHKLLHYSNQSSGNV----WKVTA--PSGEKRQVRTAGWLSVNDGQSLLNACIAGLGIA 244 Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ D LV + D+ S +Y YP K++AF +F+ Sbjct: 245 YLPSYLYADAMKQGLVEDAIPDLPVESQGIYAVYPPGRFTQPKVRAFIDFL 295 >gi|146337973|ref|YP_001203021.1| transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190779|emb|CAL74784.1| putative transcriptional regulatory protein domain, LysR family [Bradyrhizobium sp. ORS278] Length = 297 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V SGSF A QL LS+S+IS+ I LE +G++L R R + TE G + Sbjct: 7 LRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEQSLGVQLIVRTTRHASPTETGQRYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + +S P G LR+ + G L + +F++ +P++Q+Q++ Sbjct: 67 ERAVAILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVADFMVRFPELQLQIV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D D D +R+ + ++SSSL+ R++ + AAP YL P S +EL Sbjct: 127 LSDDLLDPVQDGFDVTLRIAE-LESSSLVARRITPVDRVICAAPAYLARHGTPESPEELR 185 Query: 188 KHNLITFGDLIPK-----CMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +H+ +T+G L+ D N W+ +P S L VN+ + + G GI Sbjct: 186 RHSSLTYGFLLTGNQWKLTGRDGNHWI--------QPAWS-LCVNNAEVLRDVAIKGQGI 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL+P +I D + L I+ D P +Y YP + K++ F +F+ Sbjct: 237 ALIPRFIAADALASGALTAILSDYTAPPLALYAIYPPTRHLSVKVRLFIDFL 288 >gi|220934853|ref|YP_002513752.1| putative transcriptional regulator [Thioalkalivibrio sp. HL-EbGR7] gi|219996163|gb|ACL72765.1| putative transcriptional regulator [Thioalkalivibrio sp. HL-EbGR7] Length = 308 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 150/300 (50%), Gaps = 10/300 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F + +GS T AA +L +++S +S ++S LE VG +L R +R L+LTEQG Sbjct: 4 EGIRTFVAIVEAGSITAAARRLGVAKSVVSHRLSELEDSVGARLIQRSSRRLSLTEQGEM 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 HR ++ + +L+ + E + G LR+A + G L L FL +P IQ+ Sbjct: 64 FHRFSARMLGELDEAVSRIAEEGHELRGPLRVAAPMSFGLLHLGPALYPFLREHPGIQLD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +D+ + D AIR+ + + S+L+ R+LV+ A+P YL P ++ Sbjct: 124 LDLNDRMVDLVGEGYDMAIRIGQ-LPDSTLVARRLVSSCSLLVASPAYLAEHGRPKHVEA 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H I + ++ P F D + + LQVN+ ++ + G G+A++P Sbjct: 183 LSEHRGILYSNVHPNDQLRFR---RADGTVTGHFATALQVNNGDAMRDAAIAGLGLAVIP 239 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD---WKF 299 D+IV + LV + D P VY +P+ T K++A + D WKF Sbjct: 240 DFIVWQALADGRLVVVELDGSLPEVGVYAVFPQNRHLTAKVRALTEHLAASFGDPPYWKF 299 >gi|237809614|ref|YP_002894054.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237501875|gb|ACQ94468.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 292 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 147/293 (50%), Gaps = 13/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F V + SFT AA++L +S + ISR ++ LE +G KL YR R L LTE G Sbjct: 4 WDGINEFICVVETESFTAAAKRLDVSVAHISRHVNQLEDRLGAKLLYRTTRKLRLTEVGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ +V ++L+ + E KP+GKLRI + G+ L + +FLL YP + + Sbjct: 64 VYYQHARKVLNELQEADRAVMEMEGKPTGKLRITAPVYYGEYFLAPLVNDFLLQYPQLDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L N+ ID+ + D AIRL + SSSL+ RKL + A+P YL P ++ Sbjct: 124 ELKLTNETIDLVEEGYDLAIRL-GTLDSSSLMCRKLARRTQYLCASPAYLAAKGTPHTLT 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L H + G I +W + + RI S NS L++ + G GI Sbjct: 183 DLANHRCL--GGSID------HWRFLENGKLRNWRIGSAWSCNSGLALKDAALKGLGIVQ 234 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LPDY V++ LV ++E+ P ++ YP + K+K +F+ K Sbjct: 235 LPDYYVQEELKQGLLVSLLEEYRLPDDGIWVVYPHNRHLSPKVKLLVDFLVKK 287 >gi|71279467|ref|YP_270278.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71145207|gb|AAZ25680.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 302 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 12/298 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF V +GSFT AA++L + ++++SR++S LE + + L R R LT Sbjct: 1 MEHDLNDMMVFLAVVETGSFTLAADRLGMPKANVSRKVSRLEKNLAVTLLERSTRSQHLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + ++ +L+ + E +G+L+I ++ GQ +L+ L +F+ YP Sbjct: 61 EAGRRYLAHCKRIHEELDLATASVCELFHSYTGELKIGASVASGQQVLRPALGKFMRQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+++QL L N+ +D + D IR+ + + S LI +KL I+ +A+P YL P Sbjct: 121 DLKVQLNLVNRRVDFIEEGFDVVIRIGQ-LNDSMLIAKKLGAINRKIFASPSYLAKQGNP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPI----GEPRISCLQVNSYLSIMQYC 235 +++L +H L+ L +D L + D +PR L V+ + + Q Sbjct: 180 DKVEQLTEHQLLIMNPLNISGNKDLKLPLTSTDHETFTLDCQPR---LLVDDFSMLKQAI 236 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G GI +LPDY+ + + LV I+ D +Y YP+ K+KAF +F+ Sbjct: 237 VDGLGIGVLPDYMCRQEVASGQLVNILPDWGMAKVDIYALYPKHRAKIPKVKAFIDFV 294 >gi|89072266|ref|ZP_01158845.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] gi|89051798|gb|EAR57250.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] Length = 299 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 153/302 (50%), Gaps = 21/302 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63 + + +F V GSF+ A+ +L +++S++S++IS LET +G KL R R L+LTE G Sbjct: 4 FSTIPIFTAVVELGSFSEASRKLGITKSAVSKRISALETHLGAKLIQRTTRKLSLTEAGE 63 Query: 64 ---SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 S +HR S V ++ E LQ S P G L+++ + G+ + L EFL LYP Sbjct: 64 QYYSYIHRAKSLV-NEGEDAISSLQGS---PKGHLKVSVPMVFGELHIAPLLSEFLRLYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI++ L +D+K +D+ D D +R+ + S+L+ RKL H A+P YL+ P Sbjct: 120 DIKLNLSMDDKVVDLVKDGLDMTLRI-GALSDSNLVARKLSPCHSVLCASPEYLEKYGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 ++ +L +HN + + W T P G RI +QVN+ + Q + Sbjct: 179 TALNDLKQHNCLYYSYF----RSGIEW--TFYGPSGLERIRPEGNIQVNNSNVLKQLMLD 232 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GI +P ++V+ N L+ I+E P +Y YPE KLK F +++ K Sbjct: 233 DVGICQMPLFLVEHEIANGTLIPILEQYRLPEHGIYAVYPERAFMPAKLKVFLDYLEQKL 292 Query: 295 RD 296 D Sbjct: 293 SD 294 >gi|218463557|ref|ZP_03503648.1| transcriptional regulator, LysR family protein [Rhizobium etli Kim 5] Length = 304 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 140/280 (50%), Gaps = 14/280 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V +GSFT AA L + ++++SR+I+ LE E+G++L +R R L T+ Sbjct: 2 LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLHRTTRSLHPTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +S+ +E + L E+ +P+G +RI+ + G + LQ + + L YP Sbjct: 62 GRLYYEQSSQALRTIEGANLRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L + +++ + D A R ++ S+LI RKL + H A+P YL C P Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARCGAPDR 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 +L +H+ + G WL ++ P G+ ++ N ++M + G Sbjct: 181 PADLVRHDCVIAGQ-----STHAQWL--LESPHGQETVTVSGRFAANEMQAVMATAIAGY 233 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 GIA LP + + L R+++ TP+ +Y YP + Sbjct: 234 GIARLPHGVANGFIRDGRLCRVLDGYTTPAGGLYVVYPSS 273 >gi|310824992|ref|YP_003957350.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309398064|gb|ADO75523.1| Transcriptional regulator, LysR domain protein [Stigmatella aurantiaca DW4/3-1] Length = 313 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 149/292 (51%), Gaps = 10/292 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L VF V ++GSFT AA L + +S++SR++S LE VG +L R R L LTE Sbjct: 21 MDLNELLVFAKVVQAGSFTLAARGLRMPKSTVSRKVSELEERVGAQLLQRTTRKLRLTEV 80 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + E ++ + P G LR+ T L N + L FL YP++ Sbjct: 81 GQAYYEHCARIVAEAEQAELAVTRMQSAPHGLLRV--TAPLAFNFMGSILAAFLTRYPEV 138 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI+++ ++ +D+ + D A+R + SSSLI R+L +I A+P Y++ P S Sbjct: 139 QIEMVCTDRTVDLVEEGFDLAVRAGRLPDSSSLIARRLGSIERGVMASPRYIQERGAPKS 198 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL H+ + FG + W L + +R + L VN + + G GI Sbjct: 199 PKELAAHDCLLFGVGTGGNV----WSLVSGNRSAEVSIRARLTVNEPDMLRAVTLAGFGI 254 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ALLP+ + ++ + RI+ + +P +V+ YP ++ K+ AF +F+ Sbjct: 255 ALLPNSLYAEDIATGRMQRILPEWSSPGASVHALYPVTRHHSPKVMAFVDFL 306 >gi|117922232|ref|YP_871424.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614564|gb|ABK50018.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 298 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 13/301 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A ++L LS+S+IS++I+ LE +GI+L R R L+LT+ G+ Sbjct: 4 FSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + E P G LRI+ + G+ + + EFL YPDIQ+ Sbjct: 64 RYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RK+ A+P YL P++ Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPAYLAQHGSPMTPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 L +HN + + + W + P G R+ QVN+ +I Q C+ G GI Sbjct: 183 GLTQHNCLFYSYF----QDGVEW--SFHSPYGVQRVQPKGNYQVNNSDAIHQACLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 A LP +IV+ + R I+ D P +Y YP+ K+ F+ K K Sbjct: 237 ANLPRFIVESDLQAGRLQTILTDFPLPEHGIYAVYPQRKYLPTKVTVLIGFLMEKLASGK 296 Query: 299 F 299 F Sbjct: 297 F 297 >gi|260467216|ref|ZP_05813392.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259028991|gb|EEW30291.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 307 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 151/295 (51%), Gaps = 14/295 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + LRVF VA + SF+ A L L +S++SR I+ LE ++G +LF R R + LT Sbjct: 2 IDLNDLRVFERVAATSSFSAAGRALGLPKSTVSRNIARLEQQLGARLFQRTTRAVILTSA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L +++ +++ T ++ S +P G LR++ I G N+L +L EFL +P + Sbjct: 62 GEALQARCADLMARIDETVAYVEGLSGEPRGLLRVSAGIGFGINVLSRHLPEFLARFPHV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L ++D+D+ + D AIR+ P+ S+L+ +L ++ AAP YL +PL+ Sbjct: 122 DVSLDLTSRDLDLVAERVDVAIRM-GPLPDSALVATRLGSVRRCLAAAPDYLSRHGKPLT 180 Query: 183 IQELDKHNLITF--GDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L KH I GD + + +A VD R+S VN L+I Q G Sbjct: 181 PADLSKHECIEMPRGDGRMRTWHFYRGGEMAAVDV---HNRVS---VNDALTIHQLVRNG 234 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +G+ +L Y+ D+ LV ++ D V +P + + +++F +F+ Sbjct: 235 AGLGVLSTYLCVDDFAEGRLVPLLADWDIAPVEVNLLFPSKRELSQTVRSFVDFM 289 >gi|91226712|ref|ZP_01261401.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|91189009|gb|EAS75292.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] Length = 290 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 151/291 (51%), Gaps = 13/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + ISR++S LE + +KL +R R ++L+E G Sbjct: 3 NWEGVSEFVAVAETNSFTAAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + +P G LR+ + G+ L L +FL YP + Sbjct: 63 QLYYQQCKHLVEGLELAELAITQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+L N+ +D+ D AIRL + +Q SS+I ++L + + A+P YL+ EP ++ Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQNYVCASPMYLERFGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL +H + G + D+ W ++ R+S ++ NS ++M G G+ Sbjct: 182 SELARHQCLV-GSV------DY-WHFKENKRDKSLRVSGRIKCNSGFALMGAAKRGLGLV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ DN LV ++ D ++ YP++ + K++ +F+ Sbjct: 234 QLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFL 284 >gi|109897758|ref|YP_661013.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700039|gb|ABG39959.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica T6c] Length = 295 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 150/290 (51%), Gaps = 13/290 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA + SFT A++ L +S + +SRQIS LET + +KLFYR R ++LT++G Sbjct: 4 WEGINEFVYVAEAESFTQASKNLAISTAQVSRQISALETRLNVKLFYRTTRKVSLTDEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ V L+ + + KP GK+R+ + G+ + + +F+L Y ++++ Sbjct: 64 LFYQHCRSVLDGLDAAERAITNLQSKPQGKIRLTAPVTYGEQQILPLVNDFMLQYAEVEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ +D+ D AIRL K + SS++ RKL T A+P YL P S+ Sbjct: 124 TAYLSNQKVDLVEQGYDLAIRLGK-LSDSSMMARKLGTRTNSVCASPAYLAKFGFPHSLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL KH+ + G L D+ W VD R+ L+ NS S++ + G GI Sbjct: 183 ELSKHSCL-LGTL------DY-WHFRVDDKERNIRVKGRLRYNSGFSLVDAALKGLGIVQ 234 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ ++ LV ++++ ++ YP + K+++ +++ Sbjct: 235 LPDYYVQEHLESGALVSLLDNYRESEEGIWAIYPRNRHLSPKIRSLVDYL 284 >gi|158422198|ref|YP_001523490.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] gi|158329087|dbj|BAF86572.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] Length = 313 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 146/289 (50%), Gaps = 8/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W LR VARSGS T AA Q+ + S++SR+I+ LET +G KLF R GL LT Q Sbjct: 17 FEWSDLRYLLTVARSGSLTAAARQMGVEHSTVSRRITALETALGAKLFDRRTGGLLLTPQ 76 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + Q E+ + + SG +RI G L L F +P + Sbjct: 77 GERLMAAAEGMEALALSAQGEIAGADLGVSGTVRIGAPDGFGTVFLAPRLGAFSRQHPAL 136 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + I +S AD AI L +P + L RKL + YAA YL+ S Sbjct: 137 EIQLLAMPRLISLSKREADIAISLSRP-KEGRLHARKLTDYRLGLYAAVAYLETHGPIES 195 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H I + DLI + +++ V R + +PRI + ++ ++ M+ G+G+ Sbjct: 196 RAALGRHPFIGYIDDLI--YAPELDYVPLVAREL-KPRI---KSSNLVAQMEATRAGAGV 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ P+LV ++ ++ + T Y +++ +++A +FI Sbjct: 250 CVLPCFMGDAMPDLVPVLRGEVSLTRTFYLVTHTDMRDLARVRAAADFI 298 >gi|320159388|ref|YP_004191766.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O] gi|319934700|gb|ADV89563.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O] Length = 307 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 151/290 (52%), Gaps = 9/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 +R F +V ++GSF+ AA + +Q+++S++++ LE ++G+KL R +R L+LTE G Sbjct: 7 IRAFVLVVQTGSFSAAAREQGTTQATMSKKVAALEDDMGVKLLTRTSRELSLTEVGQDYF 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 HR S + +L+ + + +P+G LRI+ + G + L EFL YP++++ L Sbjct: 67 HRCVS-ILSELDEAESNARSQMGRPTGSLRISAPVVFGNRFIGPVLAEFLRSYPELKVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L +K +D+ + D AIR ++ ++ SSLI R L M AAP YL EP S ++L Sbjct: 126 HLSDKHVDLVAERIDLAIRAKQ-LEDSSLIARHLFDNPMVLVAAPSYLSTNIEPTSPEQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN I + L + F+ C +S I+Q + G GIA LP Sbjct: 185 ASHNCILYSMLKSIGVWHFSQKGKSQSVAVSGSCRC---DSGDVILQLAIDGVGIAQLPV 241 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++VK D+ LV ++ + + +P+ K+++F +FI LK Sbjct: 242 WMVKEFVDSGQLVILLREFEVNPLPFHAVFPQNRYVPLKVRSFLDFIKLK 291 >gi|59713214|ref|YP_205989.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|59481462|gb|AAW87101.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 294 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 149/286 (52%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSF+ ++++ SQ++IS++++ LE ++G+KL R +R +LT GS + Sbjct: 7 MRAFVRVVETGSFSATGKEMNTSQTTISKKVAALENQIGVKLLTRSSRDHSLTPAGSDYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L+ + +++ + P G +RI + G+ LL + EF YPDI+I L+ Sbjct: 67 QTCVNILSELDEVEAKVRSKATLPQGSIRITAPVAFGRFLLAPIVAEFFQHYPDIKIDLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++K +++ + D AIR K ++ SSL+ R L+ M+ +A+P YL+ EP EL Sbjct: 127 LNDKHVNLISEGIDVAIR-AKNLEDSSLVARHLLDNPMYLFASPDYLEQYGEPKHPNELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + L + +FN ++ P Q ++ ++ + G GI LP + Sbjct: 186 THNCLIYSGLQDAHIWNFNH---GEKEYSVPVKGNFQSDNGDVLLDVALTGVGIVSLPIW 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + K + +L +IM + YP+ K++ F +F+ Sbjct: 243 MAKAHLTSGHLRQIMTKYSGQQLPINAIYPQRRYTPLKVRCFIDFL 288 >gi|308049767|ref|YP_003913333.1| LysR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307631957|gb|ADN76259.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM 9799] Length = 297 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 147/293 (50%), Gaps = 27/293 (9%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA + SFT A ++L +S + +SRQIS LE +G +L YR R ++LTEQG Sbjct: 4 WEGINEFVAVAETESFTAAGQRLGISTAQVSRQISALEVRLGCQLLYRTTRRVSLTEQGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L++ + LE Q + + G+ R+ ++ G+ L L EF YP++Q Sbjct: 64 QLYQHCRPLLDGLEEAQRLVSDQQDVLRGRFRLTAPVNFGEQRLAPLLAEFCADYPEVQA 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +++L N+ +D+ + D AIR+ + + SSL R+L + + A+P YL+ P I Sbjct: 124 EMVLSNQRLDLIQEGLDLAIRIGE-LPDSSLKARRLGSRELVVCASPAYLQRAGTPQDIG 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRI----SCLQVNSYLSIMQYCV 236 ++ +H +C+ L T D R G+PR + NS +++++ Sbjct: 183 DIARH----------RCL-----LGTTDIWRFRVGGQPRTVKVNGAFRCNSGVAVLEAAQ 227 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+A LP + +++ + LV ++ ++ CYP T ++AF Sbjct: 228 QGLGLAQLPAHYLEEALSSGRLVTVLSAFTPEPEDIWACYPPNRHVTATVRAF 280 >gi|149909840|ref|ZP_01898491.1| transcriptional regulator, LysR family [Moritella sp. PE36] gi|149807172|gb|EDM67128.1| transcriptional regulator, LysR family [Moritella sp. PE36] Length = 295 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ V +GSFT A+E+L +S++ +S+ ++ +E ++G++LF R R L LTE G + Sbjct: 5 DGIKTVIAVVETGSFTAASERLAMSKALVSKYVAEVEAQLGVRLFNRSTRRLALTEAGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + P G LRI+T++ G +L L FL +PDI++ Sbjct: 65 YYDSALPLLGEFSELVDNVTGEQTSPRGNLRISTSVTFGDTMLSPKLAAFLARFPDIKVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ID+ + D IR+ + SSLI RK+ + A+P YL P Q+ Sbjct: 125 LQLTDRMIDMLEEAVDVVIRIGS-VDDSSLIARKIADFPLTLCASPQYLATHGHPRKPQD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRI----SCLQVNSYLSIMQYCVL 237 +++HN C+ D N+ P+ G+ I S + VNS ++ + Sbjct: 184 INQHN----------CIIDSNFRIGKQWPVIDSNGKTEIISVKSNVAVNSPRAVKAMAIS 233 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI----TPSFTVYFCYP 274 G GIAL+P +I+KD I+E+V+ T +F ++ YP Sbjct: 234 GGGIALIPHFIIKDALE-SGILEEVLPGYSTLTFGMFAIYP 273 >gi|94500932|ref|ZP_01307457.1| transcriptional regulator, LysR family protein [Oceanobacter sp. RED65] gi|94426872|gb|EAT11855.1| transcriptional regulator, LysR family protein [Oceanobacter sp. RED65] Length = 311 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 149/291 (51%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FD +++ +F V +GSFT AA+ L L +S++SR+I+ LE +G++L R R L+LT+ Sbjct: 4 FDLNEIAIFVKVVDAGSFTGAAKSLGLPKSTVSRKITQLEERLGVRLLQRTTRTLSLTDT 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + S + +E I + E KP G LRI + G +L + EFL P+I Sbjct: 64 GSAYYNQCSRIIGDVEEANIAVTEMQSKPKGLLRITAPMLFGSRVLSDMVSEFLQKNPEI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q++++L ++ +D+ + D A R+ + SSLI R L I A+P Y+K P Sbjct: 124 QVEMMLTDQQLDLIQEGIDVAFRVGH-LADSSLIARPLGEIKTIVCASPEYIKKHGSPNH 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H+ + + PK +F+ I PR+ +VN LS+ + G GIA Sbjct: 183 PSELINHSTLGWS---PKGNWEFDSPEQFSAEI-NPRV---RVNDILSMRMLAINGVGIA 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 LP ++ ++ N R+ + S++ ++ Y + K++ F +FI Sbjct: 236 RLPTFLCAEDINEGRLNPVLCDWSYSGVPIHALYASNRHLSVKVRTFVDFI 286 >gi|71282049|ref|YP_270171.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71147789|gb|AAZ28262.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 309 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 148/286 (51%), Gaps = 10/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V ++GSFT AAEQL+ S+S IS+ I+ LE +G+KL R R LTLTE G + Sbjct: 16 AFVCVVQTGSFTAAAEQLNTSKSVISKYITRLEKRLGVKLLARTTRRLTLTEIGRTFYEG 75 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++ + + KP G L+I + G + L+EF+ YP++QI L D Sbjct: 76 SRQGLEAIDNAEEAVSFLQGKPRGTLKINAPLSFGALHIAPALEEFIHRYPEMQIDLRFD 135 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 +K ID+ D D +R+ ++ +LI R++ H AAP+YL P ++L H Sbjct: 136 DKKIDMIKDGFDLTVRITHQLE-GNLIARRIAPCHHALVAAPNYLAKRGTPKRPEDLVAH 194 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N+IT+ + ++ + A +P +Q+N+ L+I + + G GI+ +P + V Sbjct: 195 NVITYQ--YQQSPWEWEFTAAKSKPKRVRVNGSVQMNNSLAIREAVLAGVGISRMPTFAV 252 Query: 250 KDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 ++ R+++ + P + ++Y +PE K +AF +++ Sbjct: 253 GEDIKSGRLIQ--LLPKYSLLEHSIYLVFPERNHMAPKTRAFIDYM 296 >gi|301166209|emb|CBW25784.1| putative LysR family transcriptional regulator [Bacteriovorax marinus SJ] Length = 286 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 149/291 (51%), Gaps = 12/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L+ F V+ GSFT AAE L +S +SR IS LE E+G++L R R +LT + Sbjct: 1 MDLNLLKTFSKVSELGSFTKAAEVLKQPKSRVSRAISRLEDEIGLELIRRTTRQTSLTTE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ H+L+ L +S + SG LRI DLGQ++L + ++ LYP++ Sbjct: 61 GEAFYNRIKDLIHQLDEEIDSLNDSKKEISGVLRITAPEDLGQSILLDIIAKYNDLYPNV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++Q +L + +D++ D D A R+ K ++ S+LIQR +H A A+ Y++ P S Sbjct: 121 EVQTLLTGEYLDLTKDNIDLAFRVGK-LEDSNLIQRSFKDVHFVAIASREYIQRYGLPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H L+TF DFN L + P E + +S ++ + G+GI+ Sbjct: 180 TKDLHQHKLLTFKGF------DFNNLNSASSP--EALKYQINTSSIPMLLNMALEGNGIS 231 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++P + ++ LV + P T+ Y + + +AF + + Sbjct: 232 IVPSFYCEEYIRTGELVHLFPKWRGPKHTIKILYTATSNLSKRTRAFLDLV 282 >gi|218708908|ref|YP_002416529.1| LysR family transcriptional regulator [Vibrio splendidus LGP32] gi|218321927|emb|CAV17921.1| transcriptional regulator, LysR family [Vibrio splendidus LGP32] Length = 295 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 144/289 (49%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE + ++L RHAR L+LTE G + Sbjct: 8 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S + +L +T EL + SGK+RI +L + ++ EF+ YPDI I+ Sbjct: 68 FFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSEFMTQYPDINIE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+++N+ + D R+ P + SSLI RK+ + A+P YL P +E Sbjct: 128 LMMNNQADQLDPTEWDVIFRV-GPQRDSSLIARKISEVKDILIASPDYLAKNPAPSHAEE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + N V+ G + L V + Q C G GI L+P Sbjct: 187 LANHSLLKGYPLIKWQLSNSNEETVVNSEKGRFNANALNV-----VRQACSEGLGITLMP 241 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ ++ +LV+++ED +Y Y K++ F +F+ Sbjct: 242 DVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 290 >gi|294678954|ref|YP_003579569.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477774|gb|ADE87162.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB 1003] Length = 301 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + V PSG LRI+ D G NLL L +FL YP++ + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQVAPSGLLRISVATDFGVNLLSPVLGDFLQEYPEVTVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAIRVGE-LEDSTLKARKLTETAKRMIASPRYFEKYGRPTKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 185 NDHKLLHYSNQSNGNV----WKITA--PSGERRQVRSAGWLTVNDGQSLLHAAIAGLGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D + M D+ + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYADAMKKGQVEEAMPDLPMETLGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|323499532|ref|ZP_08104502.1| LysR family transcriptional regulator, transcriptional activator AphB [Vibrio sinaloensis DSM 21326] gi|323315405|gb|EGA68446.1| LysR family transcriptional regulator, transcriptional activator AphB [Vibrio sinaloensis DSM 21326] Length = 291 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 142/289 (49%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE + ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L +T EL + +GK+RI +L + ++ F+ +PDI ++ Sbjct: 64 FYNECSPLLGRLTSTAQELSDECRGAAGKIRITAPSNLTKRMMMPMFNAFMKDFPDINLE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L N + D R+ P + SSLI RK+ ++ A+P YL C P +E Sbjct: 124 LTTSNHSEQLDPTEWDVIFRV-GPQRDSSLIARKINSVEDILVASPEYLSRCPAPKHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+L+ L+ + + N ++ G Q N+ + C G GI L+P Sbjct: 183 LHQHSLLKGAPLLKWQLSNQNGETVINNDKGR-----FQANALNVVRSACSDGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K D+ +LVR++ED +Y Y K++ F +F+ Sbjct: 238 DVMLKEFIDDGSLVRVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|84394302|ref|ZP_00993026.1| AphB/LysR family protein [Vibrio splendidus 12B01] gi|86148373|ref|ZP_01066666.1| AphB/LysR family protein [Vibrio sp. MED222] gi|84375070|gb|EAP91993.1| AphB/LysR family protein [Vibrio splendidus 12B01] gi|85833856|gb|EAQ52021.1| AphB/LysR family protein [Vibrio sp. MED222] Length = 291 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 144/289 (49%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE + ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S + +L +T EL + SGK+RI +L + ++ EF+ YPDI I+ Sbjct: 64 FFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSEFMTQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+++N+ + D R+ P + SSLI RK+ + A+P YL P +E Sbjct: 124 LMMNNQADQLDPTEWDVIFRV-GPQRDSSLIARKISEVKDILIASPDYLAKNPAPSHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + N V+ G + L V + Q C G GI L+P Sbjct: 183 LANHSLLKGYPLIKWQLSNSNEETVVNSEKGRFNANALNV-----VRQACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ ++ +LV+++ED +Y Y K++ F +F+ Sbjct: 238 DVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|170723221|ref|YP_001750909.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169761224|gb|ACA74540.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 298 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 147/291 (50%), Gaps = 15/291 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA SG FT AAE++ +S S ISRQI+ LE + +L YR R +TL+E G Sbjct: 5 WEGIDEFVAVAESGQFTAAAERMGVSSSHISRQIARLEERLQTRLLYRSTRRVTLSEAGQ 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 65 TFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYPQLRV 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L N+ +D+ + D AIRL + + S L+ +L M+ A+P YL+ P S+ Sbjct: 125 EVELSNRTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRPHSLS 183 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL +HN L+ DL W D R I + + NS +++ +LG G+ Sbjct: 184 ELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALLGMGLC 234 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V ++ N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 235 QLPDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285 >gi|254788428|ref|YP_003075857.1| HTH-type transcriptional regulator YhjC [Teredinibacter turnerae T7901] gi|237685588|gb|ACR12852.1| putative HTH-type transcriptional regulator YhjC [Teredinibacter turnerae T7901] Length = 303 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 148/289 (51%), Gaps = 7/289 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L++F VA GSFT AAE LH+++ +++ IS LE VG++L R R LT +G L Sbjct: 6 QLQIFVTVAEMGSFTRAAESLHMARPGVTKAISELEKNVGVRLLQRTTRRTNLTGEGEAL 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ ++ TQ S +PSG+LRI + L ++++ L F LYPDI + L Sbjct: 66 YTKATQLLRDVDVTQNLFGGSKERPSGRLRIDIPVALAKSMVIPALPGFRSLYPDISVIL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++++ ID+ DC +RL + + +SS+I R++ TI M A+P YL P SI+ L Sbjct: 126 GVNDQPIDLIAKSVDCVLRLGQ-LTASSMIGRQIATIKMVVCASPEYLARKGPPRSIEAL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 ++H +T + W ++ I E + S L N +++ + G+ +P Sbjct: 185 NEH--LTINYFAGQKHTPLAWFFKRNQKIEEILLPSSLMANDAEAVVACALNHMGLIQVP 242 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +V + LV+++E+ + YP +++ F N++ Sbjct: 243 GILVAEELHQGALVQVLEEFSGIELPLSIMYPNRQYLAPQVRTFINWVI 291 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151280913|gb|ABR89323.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 309 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 16/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A +GSFT AA ++ +++SR IS LE +G++LF R R + LT+ G Sbjct: 13 IELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E +L + ++ +KP+G LRI+ G L L EF YPD+Q+++ Sbjct: 73 EQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N++ID + + D AIR R P S+LI RKL + AAP YLK +P ++++L Sbjct: 133 ISNRNIDFAEEAYDLAIRGRAPT-DSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQ 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241 KH I F +P W+ + + + + Y L I+ G+G+ Sbjct: 192 KHECIQFE--LPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLARSGAGL 249 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLK 293 +IV+D+ R++E + P F YP A + +++AF +F+ K Sbjct: 250 VQTYRFIVEDDLREGRLVE--LLPQFGATSRPFILLYPHARHLSSRVRAFVDFLMEK 304 >gi|209965231|ref|YP_002298146.1| transcriptional regulator, LysR family protein [Rhodospirillum centenum SW] gi|209958697|gb|ACI99333.1| transcriptional regulator, LysR family protein [Rhodospirillum centenum SW] Length = 311 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 156/293 (53%), Gaps = 14/293 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F VA + SFT AAE++ LS+S+ SR+I+ LE +G +LF+R R ++LT+ G Sbjct: 5 DDLRLFTCVAETRSFTRAAERMGLSKSAASRRIAELEARLGARLFHRTTRSISLTQVGQG 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H S++ LE + + P G L++A + G L + F +P++Q+ Sbjct: 65 FHERVSQILADLEEAEGLVASQHAAPRGVLKLAAPMSFGLLHLGPAICAFQERFPEVQVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R+ + ++ SSLI R++ A A+P YL+ EP + Sbjct: 125 VDLSDRFVDLVDEGYDLAVRIGR-LKDSSLIARRICPARRVAVASPAYLQRRGEPATPDA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H+ + + + + +++ A RP P ++ ++ N+ + V G GI Sbjct: 184 LAEHDCLHYSNA--SVADHWSFRAAPGSEMLRP-ARPAVT-MRANNGDILRTAAVAGRGI 239 Query: 242 ALLPDYIVKDNPNLVR----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +IV D+ R +++ ++PS ++ YP + K++AF +FI Sbjct: 240 AVLPTFIVGDDLAAGRLRAVLLDWTVSPS-ALHAVYPANRHLSPKVRAFVDFI 291 >gi|294142254|ref|YP_003558232.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293328723|dbj|BAJ03454.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 300 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 141/285 (49%), Gaps = 5/285 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + VF V ++G F+ AAE + S S IS+++S LE +G++L R R + LT +G Sbjct: 7 FDGVMVFTQVVKTGGFSAAAELMGHSTSYISKEVSKLEERLGVRLLNRTTRSIGLTPEGK 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E L + V P G LR++T + G N LQ L E++ LYP++ + Sbjct: 67 AYYQECQQLVADAEQAVNMLTQHEVAPKGTLRLSTPVGFGNNYLQPILAEYMRLYPNVSL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+++ +D+ + D AIR ++ SSLI RK+ + + A+P YL P Q Sbjct: 127 DLDLNDRKVDVVAEGYDLAIRASLQLEESSLICRKVFSCKGYIVASPGYLSKHGHPHHPQ 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + + K + + +P L NS + + GI L Sbjct: 187 ELSRHNCFCYSN--HKSPNKWQFNDKEGKPYTVEVRQKLVCNSAEMELALVLDDLGICRL 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P + ++D + LV + E++ P V+ YP + K++AF Sbjct: 245 PMFYMEDKIKSGKLVILFEELPAPEIDVFVVYPSRKHQSPKVRAF 289 >gi|54303517|ref|YP_133510.1| transcriptional regulator [Photobacterium profundum SS9] gi|46916947|emb|CAG23710.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 306 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 151/298 (50%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FD + L +F V SFT AA +L +++S+ISR+I+ LE +G +L R R L LT Sbjct: 8 IGFDLNTLEMFARVVACHSFTQAAAELEITKSTISRKIAELEKHLGTRLLTRSTRTLVLT 67 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G ++ + + +E T++E+ S G L I +++G LL +KEF+ L+P Sbjct: 68 KEGKTFYQSCAHIIELIEQTELEVMASHDLIRGPLNIVMPVEVGNGLLGRCMKEFMKLHP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I L L N+ +D+ + D +++ + + SSLI R A+P YL P Sbjct: 128 HVTIHLELSNRKVDLIAEGIDLKVQVGE-LDESSLIARTFHYSTRILVASPEYLAEYGTP 186 Query: 181 LSIQELDKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 I GDL + +++ + + T D+ + VN+ S+++ C+ G Sbjct: 187 -----------IILGDLKAPHQQIKNSSSIRTADKNVLAGLPYRFNVNTINSLLEACLDG 235 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI +P++I K+ + LV ++ DV + V F YPE + +L+ F +F ++ Sbjct: 236 FGITFMPEFICKEHIVSGRLVHVLPDVYSAQIPVSFVYPERKLISKRLREFIDFTIMR 293 >gi|114045851|ref|YP_736401.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113887293|gb|ABI41344.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 298 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 13/301 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A ++L LS+S+IS++I+ LE +GI+L R R L+LT+ G+ Sbjct: 4 FSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + E P G LRI+ + G+ + + EFL YPDIQ+ Sbjct: 64 RYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RK+ A+P YL P+ Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCFSVICASPAYLAQHGSPMVPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L +HN + + + W + P G RI QVN+ +I + C+ G GI Sbjct: 183 KLTQHNCLFYSYF----QDGVEW--SFQSPDGMQRIQPKGNYQVNNSDAIHRACLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 A LP +IV+ + R I+ D P +Y YP+ K+ F+ K K Sbjct: 237 ANLPRFIVESDLQAGRLQTILTDFPLPEHGIYAVYPQRKYLPTKVTVLIEFLMEKLASGK 296 Query: 299 F 299 F Sbjct: 297 F 297 >gi|148652840|ref|YP_001279933.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571924|gb|ABQ93983.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1] Length = 298 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 19/278 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA SFT AA++L +S + +SRQ+S LE + IKL YR R ++LTE+G Sbjct: 7 WEGISEFVYVAEYESFTRAAKELGISIAQVSRQVSALEKRLNIKLLYRTTRKISLTEEGQ 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ V L+ + + KP GK+++ + G+ L + +F++ YPDI++ Sbjct: 67 VFYKHCRGVLDGLDAAEQAISSLQSKPQGKIKLTAPVTYGEQQLLPLINDFIVQYPDIKV 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ +D+ D A+R+ K + S+L+ +KL AAP YL P ++ Sbjct: 127 TAFLSNQKLDLVEGGYDLAVRIGK-LSDSTLMAKKLGHRTNFVCAAPDYLDRYGTPQTLA 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240 EL HN + G L D+ W A +R I R+S ++ NS S++ + G G Sbjct: 186 ELASHNCL-LGSL------DY-WHFKQAQSERNI---RVSGSVRYNSGYSLVDAALKGIG 234 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 + LPDY V+ D+ L+ +++D P ++ YP+ Sbjct: 235 MVQLPDYYVQKYLDSGKLISVLDDFREPEEGIWAVYPQ 272 >gi|157960095|ref|YP_001500129.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845095|gb|ABV85594.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 289 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 151/292 (51%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT A+++L +S + +SRQIS LET + KLF+R R +++TE Sbjct: 2 FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQISALETRLASKLFHRTTRKVSVTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + + P G L+I + G+ + + +F LYP++ Sbjct: 62 GRVYYQHCRQVLDGLEEAERAITNLQTTPRGLLKITAPVTYGEKTIAPLINDFASLYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIRL ++ SS++ +KL + + A+P+YL P S Sbjct: 122 EVKLNLSNQKLDLVDEGYDLAIRLGH-LEDSSMMAKKLSSRTQYVCASPNYLATYGLPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + ELD+HN + G + D+ W R+ L NS +++ + G GI Sbjct: 181 LSELDQHNCL-IGTM------DY-WRFQESGKTRNVRVKGSLSCNSGHALVDAAIKGIGI 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V ++ L ++E P ++ YP+ + K++ +F+ Sbjct: 233 VQLPDYYVLPFIESGELTPLLEQNRQPEEGIWALYPQNRHLSPKVRMLLDFL 284 >gi|170719969|ref|YP_001747657.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169757972|gb|ACA71288.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 301 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 151/297 (50%), Gaps = 9/297 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF+ AA Q LS +++SRQ++ LE +G +L R R L LTE G+ + Sbjct: 7 MQTFRRVVDLGSFSAAASQAGLSHTALSRQVTQLERHLGTQLLARTTRRLHLTEAGALFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++ +++ +EL E +PSG LR+ G+ L L EF+ YP +QI+L Sbjct: 67 RHCVQILEQMQAMTLELSEHQKQPSGTLRLGVATAFGELELGRWLPEFVERYPQLQIELH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ID+ + D +R+ + SSL+ R+L T + AAP YL+ P S +L Sbjct: 127 CSDRFIDLLEEEIDICLRVTDHLPDSSLVARRLATSEVLLVAAPRYLERHGTPASPDDLA 186 Query: 188 KHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H L+ + L+ P+ + N A R I PR + NS +++ + G GIA Sbjct: 187 SHPLLGYSQLLHPQRLLLANE-AGEQRQILMPRR--VSANSPMALRAAAIGGLGIASFDC 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298 +IV+D + LV ++ D + +Y YP++ K++A +F+ F W+ Sbjct: 244 FIVQDALADGRLVPVLADWRLAARGLYAVYPQSRYLAPKVRALLDFVQAFYTRPPWR 300 >gi|87118407|ref|ZP_01074306.1| putative transcription regulator protein [Marinomonas sp. MED121] gi|86166041|gb|EAQ67307.1| putative transcription regulator protein [Marinomonas sp. MED121] Length = 312 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 14/297 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ L +F + +GSF+ A E L+ S+S++S++I+ LE E+G +L R R LTLTE G Sbjct: 4 FNALPIFVALVETGSFSKAGEHLNSSKSAVSKRITQLENELGAQLLNRTTRSLTLTEAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + S+ + + + KP GKL+++ + G+ + + F+ LYPDIQI Sbjct: 64 AYYDYASQALALAQEAENAVSLMQAKPKGKLKLSVPMTFGRLYIAPIIPAFMALYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++I+D+K D D IR+ + ++ SSL+ +KL + AAP YL P + Sbjct: 124 EMIMDDKRQDFIKQGFDIGIRIGQ-LEDSSLVAKKLADCQSYLCAAPAYLDKQGTPKKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP--------IGEPRISCLQVNSYLSIMQYCV 236 +L +HN + + + +D+ +L R I +VN+ ++ + + Sbjct: 183 DLTRHNCLYYSYF--RAGQDWQFLKKSVRHRNYQDSDFIRVAAKGNYRVNNSEALYEAAL 240 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI +P +IV L+ ++ D P +Y +PE T K++ F +F+ Sbjct: 241 AGLGIVNMPTFIVGPAIRETQLIPLLTDYPQPLHGIYAIFPERKHLTAKVRVFIDFL 297 >gi|149202558|ref|ZP_01879530.1| transcriptional regulator, LysR family protein [Roseovarius sp. TM1035] gi|149143840|gb|EDM31874.1| transcriptional regulator, LysR family protein [Roseovarius sp. TM1035] Length = 309 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 19/292 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF VA +GSF AA +LHLS +++R I+ LE +G ++F R R LT+T+ G + Sbjct: 6 EIEVFIAVAEAGSFAGAARRLHLSPPAVTRAIAALEDRLGARVFQRTTRSLTITDVGERF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V L+T + E + P G L + ++ G++ L + FL+ +P + + + Sbjct: 66 LGAARRVLGDLDTAEREAMGETTAPQGHLTVTASVTFGRSALGPMVGSFLVAHPRVSVSV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D AIR+ + + S LI ++L T+H A+P YL P + +L Sbjct: 126 LLLDRVVNLVEEGVDLAIRIGE-LPESRLIAKRLGTVHRILVASPEYLAQHGTPAAPADL 184 Query: 187 DKHNLITFGDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 H +I F L+P + + +A R L++N ++ + +LG G Sbjct: 185 RHHAVIAFTGLMPNREWRHRSGQRSASVALAPR---------LEINDAVAAIDAAILGQG 235 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 I Y+V + LV +++ P V YPEA KL+AF +F Sbjct: 236 ITPTLSYMVAGHIRAGRLVPVLQAHTLPPQPVNLVYPEARLMAPKLRAFLDF 287 >gi|149188267|ref|ZP_01866561.1| hypothetical transcriptional regulator [Vibrio shilonii AK1] gi|148837856|gb|EDL54799.1| hypothetical transcriptional regulator [Vibrio shilonii AK1] Length = 310 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 21/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D VF V SGSFT AAE+ S S IS++++ LE +G++L R R L LT +G Sbjct: 8 DGYVVFVEVVDSGSFTFAAERTQHSTSYISKEVTKLEERLGVRLLQRTTRTLKLTPEGEN 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V + + L S ++PSG L+I + LG + + ++ YP + + Sbjct: 68 FYQHARDVVDAAQAAEESLSGSQIEPSGLLKITCPVALGLSTMSAIFTQYAQRYPKVTLD 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L +K +DI D AIR ++ SSLI RKL T A+P YL+ P + E Sbjct: 128 IDLSDKKVDIIEQGIDIAIRASDRLEDSSLISRKLFTDRGITVASPAYLQQYGTPRAPSE 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWL--------ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L HN+I++ + W+ A+VD S + VNS ++ C Sbjct: 188 LAHHNIISYS----YAKNNKRWVYEDLDGNEASVD------ITSRITVNSAKMELEMCKA 237 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP + + + L+ + +D VY YP + K++AF++ + Sbjct: 238 GLGITRLPRFYLGNELETGELIELFDDYPKHQLGVYMVYPSRKHMSAKVRAFKDIV 293 >gi|120555165|ref|YP_959516.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325014|gb|ABM19329.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8] Length = 302 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 19/295 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + W+ + F VA + SFT AA++L +S + +SRQ+S LE + +LFYR R +++TE Sbjct: 2 YRWEGINEFVAVAETESFTRAAKRLDVSTAQVSRQVSALEARLSTRLFYRTTRRVSVTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + + + P G+LR+ + G+ + + +F+L YP++ Sbjct: 62 GQIFYQHCRQVLDALEQAERSITNMQLVPRGRLRLTAPVTYGEKSIAPLVNDFVLRYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + L N+ +D+ + D A+R+ K ++ S+L+ R+L + ++ A+P YL P S Sbjct: 122 DVDMKLTNQTLDLVAEGYDLAVRMGK-LEDSTLMARRLASRTLYVCASPDYLATHGTPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL HN + G+L D+ +P ++ +S +++ + G GI Sbjct: 181 LTELANHNCL-LGNL------DYWRFQEAGQPRNVRVTGNIRCDSGRALLDAALKGIGIV 233 Query: 243 LLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ P L R ED ++ YP + K++ +F+ Sbjct: 234 QLPDYYVQSALDSRLLIPVLTRYQED----DDGIWAVYPHNRHLSPKIRLLLDFL 284 >gi|113971935|ref|YP_735728.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|113886619|gb|ABI40671.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] Length = 296 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 145/292 (49%), Gaps = 13/292 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A ++L LS+S+IS++I+ LE +GI+L R R L+LT+ G+ Sbjct: 4 FSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + E P G LRI+ + G+ + + EFL YPDIQ+ Sbjct: 64 RYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RK+ A+P YL P+ + Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLITRKIAPCLSVICASPAYLAQHGSPMVPR 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 EL +HN + + + W + P G RI QVN+ +I + C+ G GI Sbjct: 183 ELTQHNCLFYSYF----QDGVEW--SFQSPNGMQRIQPKGNYQVNNSDAIHRACLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LP +IV+ + R I+ + + P +Y YP+ K+K +F+ Sbjct: 237 ANLPLFIVESDLQAGRLQTILTNFLLPEHGIYAVYPQRKYLPTKVKVLIDFL 288 >gi|148977682|ref|ZP_01814243.1| AphB/LysR family protein [Vibrionales bacterium SWAT-3] gi|145963050|gb|EDK28319.1| AphB/LysR family protein [Vibrionales bacterium SWAT-3] Length = 291 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE + ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S + +L +T EL + SGK+RI +L + ++ +F+ YPDI I+ Sbjct: 64 FFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSDFMTQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+++N+ + D R+ P + SSLI RK+ + A+P YL P +E Sbjct: 124 LMMNNQADQLDPTEWDVIFRV-GPQRDSSLIARKISEVKDILIASPEYLAKNAAPSHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + N V+ G + L V + Q C G GI L+P Sbjct: 183 LANHSLLKGYPLIKWQLSNSNDETVVNSEKGRFNANALNV-----VRQACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ ++ +LV+++ED +Y Y K++ F +F+ Sbjct: 238 DVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|145297998|ref|YP_001140839.1| LysR family transcriptional activator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850770|gb|ABO89091.1| LysR-family transcriptional activator [Aeromonas salmonicida subsp. salmonicida A449] Length = 290 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 14/292 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D + + +F V GSFT AAE L + +SS+S++IS LET++G++L R R L+LT Sbjct: 3 NVDLELMGLFATVVEQGSFTGAAEALGMPKSSVSQKISRLETQLGVRLLQRTTRRLSLTP 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG + + + + P+G++RI G LL L EF LYP+ Sbjct: 63 QGEIYVEQCQALLALARSANLAMARLRAAPAGRVRITAPEATGTLLLGRILAEFRALYPE 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L + +D+ + D A+R P++ SSLI R++ + H AAP YL P Sbjct: 123 VVLELTLCDDQLDLVGEGYDLALR-AAPLKDSSLICRRIGQVPRHLVAAPGYLAAHGAPQ 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + EL H + L +++ W RP G +C+ NS L++ + + GI Sbjct: 182 QLSELGLHPCLVHSALPVWPLQEGGW-----RPQG----ACIS-NSLLALRELALHEGGI 231 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ALLP ++ +++ L +++ D P Y YP L++ +F+ Sbjct: 232 ALLPHHVCQEDLATGRLQKLLPDHPIPPNPFYLIYPSREHLAPALRSLMDFV 283 >gi|152984664|ref|YP_001345633.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959822|gb|ABR81847.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 355 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSFT AA+ L LS + +SR IS LE + +L +R R L LTE G + Sbjct: 50 MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 109 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E + ++P G+LR+ + + LGQ+ L + + L+PD+ I+L Sbjct: 110 ERCRAILADIEVAEAEASGAHIRPCGRLRVQSLMGLGQHHLVPMIARYGALFPDVVIELT 169 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I + + S + ++L +IH A+P YL+ P S+ EL+ Sbjct: 170 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQRGVPRSVDELE 229 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + D P E WL ++ GE +S VN + Q G GIALL Sbjct: 230 QHVCLRLQD--PAYPE--GWLFVDEQ--GERTVSPQNTFMVNVAEVMAQAARAGLGIALL 283 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y+ N L R+M T+Y YP R ++ K R W Sbjct: 284 PSYVAAPALRNGELRRVMPGHTMHERTIYALYPS-----------RRYLDAKIRTW 328 >gi|34496196|ref|NP_900411.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34102050|gb|AAQ58417.1| probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472] Length = 300 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 142/290 (48%), Gaps = 13/290 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ ++ F VA GSFT AA +L +S + +SRQ+ LE +G +L YR R L+LTE G Sbjct: 4 WEGMQEFTAVADCGSFTRAARRLGISIAQVSRQVGQLEERLGARLLYRTTRQLSLTEAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ L + + + P G+L++ + G + + + +F+ YP +++ Sbjct: 64 LYLAHCRQLLESLADAEQAVSQLQAAPQGQLKLTAPLAYGHSHISPLVLDFMQRYPLLEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L N+ D+ + D AIR+ + + SSL+ RKL H A+P YL C EP Q Sbjct: 124 SLDLSNQVKDLVHEGYDLAIRIGR-LTDSSLMARKLAQRRHHVCASPDYLARCGEPRRPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L +H + G + W V+ R+ ++ ++ + + V G G+A Sbjct: 183 DLQRHQCLQIG--------NEGWHLQVNGRRQSVRVQGRMRCSTAAPLAEAAVRGMGLAQ 234 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V ++ LV ++ D P ++ YP + + K++ +F+ Sbjct: 235 LPDYYVSAYLESGALVEVLADYAEPEEGIWALYPHNRQLSPKVRLLVDFL 284 >gi|269104162|ref|ZP_06156858.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268160802|gb|EEZ39299.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/285 (31%), Positives = 136/285 (47%), Gaps = 8/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY + GSF+ AAEQ +++S IS++IS LE ++G++L YR R LT TE G Sbjct: 5 DDLILFYHLIEHGSFSKAAEQAGITKSVISKRISKLEADLGVQLIYRTTRKLTPTEAGII 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +VYH ++ + SG ++I G+ +L + EF YPDI+I+ Sbjct: 65 FYSHARDVYHSVQNAMNAMSGLGESISGTIKITVPTISGEMILPQAISEFSQQYPDIKIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI D AIR R + SSLI RKL+ H +P YL+ P E Sbjct: 125 MDLDNRFVDIIDKGFDLAIRTR-ALPDSSLIARKLINAHWIICVSPAYLRKYGLPQHTSE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + + E WL ++ I + N+ ++ Q +LG GI + Sbjct: 184 LTSHNCLGYSYQETGASE---WLINDNQGIHTMTVKGNFTTNNASALRQAALLGQGIIYV 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V N +L I +Y YP + K+K F Sbjct: 241 PKILVSADLANGDLQEIFSGQAAKHLGIYAVYPYTKQQAIKIKLF 285 >gi|258621809|ref|ZP_05716840.1| transcriptional regulator, LysR family [Vibrio mimicus VM573] gi|258586040|gb|EEW10758.1| transcriptional regulator, LysR family [Vibrio mimicus VM573] Length = 326 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T +++ + ++I+R+I LE + ++L RHAR LTLTE G + Sbjct: 39 DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 98 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ S + +L + E+ + SG++RI+ +L + ++ F+ YPDI I+ Sbjct: 99 FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 158 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++ N+ D+ D R+ P + SSLI RK+ + A+P YL N +P +E Sbjct: 159 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPTYLANHPQPTHAEE 217 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H L+ L+ + + V+ G + S L V + C G GI L+P Sbjct: 218 LHQHQLLKGYPLLKWQLTNSQGETVVNTDRGRFQASALNV-----VRSACSEGLGITLMP 272 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ D+ +LV+++ D + +Y Y K++ F +F+ Sbjct: 273 DVMLREYLDDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321 >gi|329118191|ref|ZP_08246901.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327465612|gb|EGF11887.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 299 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF V R GSFT AA++L +S + S+ +S LE +V KL R++R L LTE G + H Sbjct: 7 LRVFREVVRQGSFTRAADKLGISTAMASKHVSHLEKQVCAKLLQRNSRSLHLTEAGEQYH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++ L+T + P G+LRI + + G L E+ +P + + LI Sbjct: 67 RCCAQALETLDTAAERAAGGADTPQGRLRITMPMWFANPVFSGWLAEYRRRHPQVALDLI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ D+ + D A+R+ SLI R L I + AAP YL P + Q+ Sbjct: 127 LDNRKADLIAEGIDLALRVSTDDLPPSLIVRPLSDIRFYLAAAPDYLAAHGTPATPQQAA 186 Query: 188 KHNLI--TFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + + + ++ D+ I + + F LA + ++ ++ L + Q + G GI Sbjct: 187 RLDFVLPSYVDMDSVRITRGSDSFT-LAPA---------APVRADNTLMVRQMVLAGCGI 236 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++ V+ N L RI+ D + T+Y Y + + K+++F +F+ Sbjct: 237 GYLPEWTVRRDFANGRLARILPDWHILTATLYAAYADRAFLSAKVRSFIDFL 288 >gi|209520272|ref|ZP_03269040.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209499301|gb|EDZ99388.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 14/300 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + +FT AA +L LS+ +SR++ LE +G++L R+ R L +T+ G + Sbjct: 4 DDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEEALGVQLLIRNTRKLAVTDLGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + + P G LR++ + G L + FL + D++ Sbjct: 64 FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVAAFLREHRDVRFD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D AIR+ + SSLI +KL+ + M A +P YL+ P + Sbjct: 124 MELSDRAVDVIGEGFDMAIRI-GTLADSSLIAQKLIDVKMLACCSPGYLRRRGTPAVPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L KH+ + +G +W +VD + + L+ N+ I V G GI L Sbjct: 183 LAKHDCLLYGH-----GGAVSWEFSVDGALKSVEVRGPLRANNGDLIRDAAVAGLGIVRL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR--DW 297 PD+IV D N LV ++E + + VY YP+ +++ ++AF F+ LK R DW Sbjct: 238 PDFIVADALANGQLVPVLEAFLPAATGVYAVYPQHRQSSVTIRAFVEFLRKHLKKRLADW 297 >gi|90409751|ref|ZP_01217768.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90329104|gb|EAS45361.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 24/305 (7%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+F+ +D + VF V SGSFT AA S S IS++I+ LE +GI+L +R R L Sbjct: 1 MAFNAALFDGMVVFTEVVNSGSFTQAALNSGHSTSYISKEINKLEARLGIRLLHRTTRTL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT +G + ++ + + + KP G+L+++ + G + L+ L +F Sbjct: 61 SLTPEGELYFQQCQQLIEDAQVAENAITGQQEKPQGRLKVSCPVSFGLSNLRPILSQFTA 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP I ++L L+++ IDI + D AIR K + SSLI R++ + A+P+YLK Sbjct: 121 QYPKIVLELDLNDRKIDIVAEGYDVAIRASKQLDDSSLISRRIRRSYAVVIASPNYLKKH 180 Query: 178 REPLSIQELDKHNLITFG--------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229 P EL +H I++ DLI K + T+ PI + + NSY+ Sbjct: 181 GTPKHPSELSQHKTISYSYIRQGNSWDLIDKDGQ------TIHIPI---KSQVVTNNSYM 231 Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + C+ G GI +LP + + D LV + D ++ YP + K++ F Sbjct: 232 E-LALCMAGQGITILPHFHLHDEIEQGKLVALFSDFPRLPIDIFMVYPSRKHMSAKVRCF 290 Query: 287 RNFIF 291 +FI Sbjct: 291 LDFIM 295 >gi|83309323|ref|YP_419587.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944164|dbj|BAE49028.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 309 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 7/289 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ +D + F VA +GSF+ AA +L LS+S ISRQ+S LE ++G++L +R R L+ T Sbjct: 1 MTPRFDTIIAFVRVAETGSFSEAARRLGLSKSMISRQVSALEADLGVRLLHRTTRSLSPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + L+ + + P G+LR++ + G L L FL YP Sbjct: 61 EAGRAYLERCQRILADLDEANLLVSHLQAVPRGRLRVSAPLSFGIGHLSACLPGFLERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++++ ++ +D+ + D A+R+ + + SSLI R+L + A A+P YL+ P Sbjct: 121 EIELEMGFTDRHVDLVEEGWDLAVRIGR-LADSSLIVRRLAPVRRMAAASPAYLERRGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +EL H+ +T G + ++ + +P+ ++ + + G G Sbjct: 180 RRPEELSAHDCLTHGG---RVQSEWRFTGDDGKPVQVEVRGRFHADNGDVLRDMALAGLG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + LLP + + D+ LV ++E + ++ YP + K++AF Sbjct: 237 VVLLPSFFLGDDIRAGRLVPLLEAYVPLDSSLNAVYPHGRHLSPKVRAF 285 >gi|126730859|ref|ZP_01746668.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] gi|126708575|gb|EBA07632.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] Length = 301 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 141/293 (48%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAEFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPSYFQKYGRPSRIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + W T P GE R L VN S++ C+ G GIA Sbjct: 185 NEHKLLHYSNQASGNV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNACIAGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ D ++ED I P VY YP K++AF +F+ Sbjct: 239 YLPSYLYHDAMEQ-GLVEDAI-PDLPMEMQGVYAVYPPGRFTQPKVRAFIDFL 289 >gi|23016520|ref|ZP_00056275.1| COG0583: Transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 309 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 143/289 (49%), Gaps = 7/289 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ +D + F VA +GSF+ AA +L+LS+S ISRQ+S LE ++G++L +R R L+ T Sbjct: 1 MNPRFDTIIAFVRVAETGSFSEAARRLNLSKSMISRQVSALEADLGVRLLHRTTRSLSPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + L+ + + P G+LR++ + G L +L FL YP Sbjct: 61 EAGRAYLERCQRILADLDEANLLVSHLQAVPRGRLRVSAPLSFGIGHLAESLPGFLARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++++ ++ +D+ + D A+R+ + + SSLI R+L I A A+P Y+ P Sbjct: 121 EIELEMGFTDRHVDLVEEGWDLAVRIGR-LADSSLIVRRLAPIRRLAAASPDYVARRGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + EL H+ +T G + ++ + +PI ++ + + G G Sbjct: 180 VHPSELSGHDCLTHGG---RVHSEWRFTGEDGKPIQVEVKGRFDSDNGDVLRDMAMAGLG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I LLP + + D LV ++E + ++ YP + K++AF Sbjct: 237 IVLLPSFFLGDGIRAGRLVPLLEKYVPLDSSLNVVYPHGRHLSPKVRAF 285 >gi|114800444|ref|YP_759844.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114740618|gb|ABI78743.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC 15444] Length = 326 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 22/296 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LRVF VVA S + AA +L S +ISR+I LET +G +LF R RG+ LTE Sbjct: 6 LDWDTLRVFRVVAELSSMSGAAARLGESPPTISRKIDDLETTIGAQLFVRSTRGVELTEA 65 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + R ++ T + E G++ I+T +G L L EF + P I Sbjct: 66 GKVVLRYAHQMAEAANTLRDEAGAQRAPVEGRITISTGDGIGPYWLAPRLHEFQDMNPRI 125 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI++I+++ D++ AD AI +P +S L+ +L H +A+ Y + + P S Sbjct: 126 QIRMIVNDDPADVTNGDADIAIHFSEP-KSHELLTHRLGVQHYIGFASKDYFRERKPPES 184 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--------VNSYLSIMQY 234 + E K+ +C+ +++ V+R P++S L+ NS +++Q Sbjct: 185 LFEYYKY----------RCLMHSSYVNQVER--WAPKVSELRRMIDYAFVSNSGTALIQS 232 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 C G G+A+LP +I + L+ + I P + Y E + + + F ++I Sbjct: 233 CAAGGGVAILPSFIAAMDNRLIPLDLPEIAP-IQFWVAYTERFRRRPEGQPFVDWI 287 >gi|84500460|ref|ZP_00998709.1| transcriptional regulator, LysR family protein [Oceanicola batsensis HTCC2597] gi|84391413|gb|EAQ03745.1| transcriptional regulator, LysR family protein [Oceanicola batsensis HTCC2597] Length = 301 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAEFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ S+L RKL AAP Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSKRMIAAPTYFEKYGRPTKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSSQASGNV----WKLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAIAGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ + ++M+ ++ T + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYAEALETGQVMDAMPELPTETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|13476459|ref|NP_108029.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14027220|dbj|BAB54174.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 306 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 144/290 (49%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA SF AA L LS +++SR +S LE +G +LF R +R L LT+ G Sbjct: 6 DFEGLAMFAKVAEERSFAAAARVLGLSVATVSRGVSRLEERLGARLFNRTSRRLALTDFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L S +Y E + +E S P G +R+A + G + L +F LYPD+ Sbjct: 66 HRLAERASRLYRDAEDAENAARELSASPRGLVRLAVPMSFGLRWVAPLLPDFFKLYPDVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + L + +D+ + D A+R+ + SSL+ R+L +I AAP YL P + Sbjct: 126 IDMHLSDAVVDLIGEGFDAALRIAV-LPDSSLVARRLCSIAPFIVAAPSYLARHGRPSTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++LD H+ + + + + F+ A D + P L+V + +++ + G IA Sbjct: 185 RDLDAHHCLGYAYRPRQDVWHFS-NAAGDEEVVTPS-GPLRVTNSDALVPTVLAGIAIAE 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++I + + L I+ D P +YF P A K++A F+ Sbjct: 243 LPEFIASEYLADGRLQAILTDWTLPRGALYFVTPSARARPAKVEAVAGFM 292 >gi|148549368|ref|YP_001269470.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148513426|gb|ABQ80286.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 298 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 147/295 (49%), Gaps = 15/295 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS W+ + F VA SG FT AAE+L +S S ISRQI+ LE + +L YR R +TL+ Sbjct: 1 MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + E + + + +P G LR+ + G+ + + F+ LYP Sbjct: 61 EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + L N +D+ + D AIRL + + S L+ +L M+ A+P YL++ P Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLEHYGRP 179 Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238 S+ EL +HN L+ DL W D R I + + NS +++ + G Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LPDY V ++ N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 231 IGLCQLPDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285 >gi|90579813|ref|ZP_01235621.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] gi|90438698|gb|EAS63881.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] Length = 296 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 15/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F W+ + F VA + SFT A+++L +S + +SRQ+S LE + KLFYR R ++LTE+ Sbjct: 2 FLWEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ ++ +V LE + L P G +++ + G+ + + +F+L YP++ Sbjct: 62 GNVYYQHCRQVMDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + + N+ +D+ D AIRL + + SSS++ ++L + M+ A+P YL P S Sbjct: 122 EVVIDMTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTSRTMYVCASPDYLAKFGVPHS 180 Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 + EL HN LI D +W R+S L NS + + G G Sbjct: 181 LSELRHHNCLIGNYD---------HWRFQESGKEKSVRVSGNLNCNSGYGLRDAVLKGIG 231 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IA LPDY + D+ +V I+ + P ++ YP + K++ +F+ K Sbjct: 232 IAQLPDYYIDKDLDSGAIVPILTNYQEPDEGIWALYPHNRHLSPKIRMLVDFLAEK 287 >gi|258626245|ref|ZP_05721092.1| transcriptional regulator, LysR family [Vibrio mimicus VM603] gi|258581297|gb|EEW06199.1| transcriptional regulator, LysR family [Vibrio mimicus VM603] Length = 326 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 147/289 (50%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T +++ + ++I+R+I LE + ++L RHAR LTLTE G + Sbjct: 39 DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 98 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ S + +L + E+ + SG++RI+ +L + ++ F+ YPDI I+ Sbjct: 99 FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 158 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++ N+ D+ D R+ P + SSLI RK+ + A+P YL N +P +E Sbjct: 159 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPTYLANHPQPTHAEE 217 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H L+ L+ + + V+ G + S L V + C G GI L+P Sbjct: 218 LHQHQLLKGYPLLKWQLTNSQGETVVNTDRGRFQASALNV-----VRSACSEGLGITLMP 272 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ D+ +L++++ D + +Y Y K++ F +F+ Sbjct: 273 DVMLREYLDDGSLIQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321 >gi|116695242|ref|YP_840818.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113529741|emb|CAJ96088.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 310 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 8/287 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + + F V +GS + AA +L+LS+S +S +++ LE +G L R R L+LTE Sbjct: 2 FKLEGVASFVAVVEAGSISEAARRLNLSKSVVSERLAELEKAMGANLLRRTTRRLSLTED 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + H++E ++ E +G LRI+ + G+ L + FL +P++ Sbjct: 62 GAAFLERATRILHEVEAAATDVAERRGTLAGSLRISAPVTFGRMHLGPAIYPFLARHPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L LD++ +D + D D +R P++SS L+ +L H A+P YL P + Sbjct: 122 ELSLDLDDRRVDAATDSYDAVVR-HGPLESSRLVAWQLAPSHRLLVASPDYLAQMGAPAT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL +H I + + + D+ I + L+VN+ + + G GIA Sbjct: 181 LAELQQHRGIFYAN---RGAADWRLHGPDGTEIARAAV-ALRVNNGDMMRDAAIAGVGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LLP +I D L I + ++Y +PE + + +L+AF Sbjct: 237 LLPTFIAGDAIRQGALAVIEVGLRAEPESIYIAHPEGRRVSARLRAF 283 >gi|28899928|ref|NP_799583.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153838937|ref|ZP_01991604.1| transcriptional regulator [Vibrio parahaemolyticus AQ3810] gi|260363222|ref|ZP_05776091.1| transcriptional regulator [Vibrio parahaemolyticus K5030] gi|260880509|ref|ZP_05892864.1| transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|260898538|ref|ZP_05907034.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466] gi|260902235|ref|ZP_05910630.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|28808211|dbj|BAC61416.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149747608|gb|EDM58536.1| transcriptional regulator [Vibrio parahaemolyticus AQ3810] gi|308084979|gb|EFO34674.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466] gi|308092319|gb|EFO42014.1| transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|308110467|gb|EFO48007.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|308112030|gb|EFO49570.1| transcriptional regulator [Vibrio parahaemolyticus K5030] gi|328469915|gb|EGF40826.1| putative transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 289 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 151/291 (51%), Gaps = 13/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + ISR++S LE + +KL +R R ++L+E G Sbjct: 3 NWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + +P G LR+ + G+ L L +FL YP + Sbjct: 63 QLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+L N+ +D+ D AIRL + +Q SS+I ++L + + A+P YL+ EP ++ Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQTYVCASPMYLERFGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL +H + G + D+ W ++ R+S ++ NS +++ G G+ Sbjct: 182 SELGRHQCLV-GSV------DY-WHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ D+ LV ++ D ++ YP++ + K++ +F+ Sbjct: 234 QLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFL 284 >gi|170742041|ref|YP_001770696.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196315|gb|ACA18262.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 301 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 135/258 (52%), Gaps = 8/258 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR+G T AA+++ + S++SR++S LE+ +G +LF R G LT Sbjct: 4 FDWNDLRAFLAVARAGRLTVAAQRMGIDHSTLSRRLSALESALGTRLFGRRPSGFVLTSD 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + T + L E+S + SG +R+ T G L L + P + Sbjct: 64 GERLLGDAERIESVAITLRARLDEASHQVSGTVRVGTPEAFGTTFLAPRLAQLFAAQPAL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L+ + + +S AD A+ L +P ++ L RKLV + YAA Y + + Sbjct: 124 EIELVANPRSFSLSKREADLAVTLTRP-ETGRLFARKLVDYALGLYAARSYAEAAEAIRT 182 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L +H + + DL+ + N+L V I P+ ++++ ++ M+ G+G+ Sbjct: 183 VDDLHRHRWVGYVEDLL--WTSELNYLPQVSSAI-HPQA---RISNVITQMEAVRGGAGL 236 Query: 242 ALLPDYIVKDNPNLVRIM 259 +LP ++ + +P+L+ ++ Sbjct: 237 GILPHFLARGHPDLIAVL 254 >gi|167032182|ref|YP_001667413.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166858670|gb|ABY97077.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 298 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 15/295 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS W+ + F VA SG FT AAE+L +S S ISRQI+ LE + +L YR R +TL+ Sbjct: 1 MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + E + + + +P G LR+ + G+ + + F+ LYP Sbjct: 61 EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + L N +D+ + D AIRL + + S L+ +L M+ A+P YL+ P Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179 Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238 S+ EL +HN L+ DL W D R I + + NS +++ + G Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LPDY V + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 231 IGLCQLPDYYVLEHLNNGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285 >gi|89073120|ref|ZP_01159659.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] gi|89051073|gb|EAR56530.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] Length = 296 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 148/296 (50%), Gaps = 15/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F W+ + F VA + SFT A+++L +S + +SRQ+S LE + KLFYR R ++LTE+ Sbjct: 2 FLWEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + L P G +++ + G+ + + +F+L YP++ Sbjct: 62 GGVYYQHCRQVMDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + + N+ +D+ D AIRL + + SSS++ ++L + M+ A+P YL P S Sbjct: 122 EVVIDMTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTSRTMYVCASPDYLARFGVPHS 180 Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 + EL HN LI D +W R+S L NS + + G G Sbjct: 181 LSELRHHNCLIGNYD---------HWRFQESGKEKSVRVSGNLNCNSGYGLRDAVLKGIG 231 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IA LPDY + D+ +V I+ + P ++ YP + K++ +F+ K Sbjct: 232 IAQLPDYYIDKDLDSGAIVPILTNYQEPDEGIWALYPHNRHLSPKIRMLVDFLAEK 287 >gi|312882079|ref|ZP_07741829.1| LysR family transcriptional regulator, transcriptional activator AphB [Vibrio caribbenthicus ATCC BAA-2122] gi|309370215|gb|EFP97717.1| LysR family transcriptional regulator, transcriptional activator AphB [Vibrio caribbenthicus ATCC BAA-2122] Length = 291 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 142/287 (49%), Gaps = 9/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE + ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ S + ++L + EL + +GK+RI +L + LL F+ YPDI I+ Sbjct: 64 FYQECSPLLNRLTSATEELTDECRGAAGKIRIIAPSNLTKRLLMPIFNGFMAQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L N + D R+ P + SSLI RK+ ++ A+P YL C P +E Sbjct: 124 LTTSNHAEQLDPTEWDVIFRV-GPQRDSSLIARKIGSVADILVASPEYLSRCPAPKHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+L+ L+ + + + V+ G + L V + C G GI L+P Sbjct: 183 LHQHSLLKGSPLLKWQLSNKTGESIVNNDKGRIQADTLDV-----VRLACSAGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 D ++K D+ +LVR++ED VY Y K++ F +F Sbjct: 238 DVMLKEYTDDGSLVRVLEDWSANPREVYMLYNHKDHLPEKVRLFIDF 284 >gi|163801538|ref|ZP_02195437.1| putative transcriptional regulator [Vibrio sp. AND4] gi|159175027|gb|EDP59827.1| putative transcriptional regulator [Vibrio sp. AND4] Length = 289 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 147/292 (50%), Gaps = 15/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + ISR++S LE + +KL +R R ++LTE G Sbjct: 3 NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + +P G L++ + G+ L L +F+ YP + Sbjct: 63 QLYYQQCKHLVEGLELAELAVTQMQAEPKGILKVTAPVTYGEINLSPLLHQFIEKYPQVN 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L N+ +D+ D AIRL + +Q SSLI ++L + ++ A+P YL+ EP ++ Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLERSGEPHTL 181 Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 EL H L+ D W + R+S ++ NS +++ G G+ Sbjct: 182 SELSHHQCLVGTADY---------WHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGL 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ DN +LV ++ D ++ YP+ + K++ +F+ Sbjct: 233 VQLPDYYVQEALDNGDLVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFL 284 >gi|254227712|ref|ZP_04921143.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|151939754|gb|EDN58581.1| LysR substrate binding domain protein [Vibrio sp. Ex25] Length = 309 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V G+FT A QL S S++S+ I+ LE ++G++L +R R L LTE G Sbjct: 7 IKLFVSVVDLGNFTAVANQLGQSPSTVSKAIARLEQDLGVRLVHRTTRQLQLTEAGFNYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV + L++++ +L +S P G LR++ + GQN + + EF YP++++ L Sbjct: 67 ETAREVINLLKSSEEQLHQSIASPFGTLRVSLPLSFGQNYITPLIPEFCERYPEVKLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ I D AIR + + S+LI R+L I M +A+P Y+K P S++ L+ Sbjct: 127 FSDEYTSILESGMDVAIRSGR-LNDSNLIARRLCPIDMGMFASPEYIKKFGRPQSVEALN 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 +H I + + L T+ P+ + + V++ ++ LG+GIA Sbjct: 186 QHKWIMY------RYKQSGRLLTLTMPLDGQLVEFSPTHQVTVDNGYAMASLASLGAGIA 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 L+P Y+ +D L+ + E T VY YP K+K F ++I K Sbjct: 240 LMPQYLARDLVQQGKLMLVSEPQRTDGQGVYIYYPSRKFVPAKVKVFIDYIIHK 293 >gi|262395758|ref|YP_003287611.1| transcriptional regulator [Vibrio sp. Ex25] gi|262339352|gb|ACY53146.1| transcriptional regulator [Vibrio sp. Ex25] Length = 330 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V G+FT A QL S S++S+ I+ LE ++G++L +R R L LTE G Sbjct: 28 IKLFVSVVDLGNFTAVANQLGQSPSTVSKAIARLEQDLGVRLVHRTTRQLQLTEAGFNYL 87 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV + L++++ +L +S P G LR++ + GQN + + EF YP++++ L Sbjct: 88 ETAREVINLLKSSEEQLHQSIASPFGTLRVSLPLSFGQNYITPLIPEFCERYPEVKLDLS 147 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ I D AIR + + S+LI R+L I M +A+P Y+K P S++ L+ Sbjct: 148 FSDEYTSILESGMDVAIRSGR-LNDSNLIARRLCPIDMGMFASPEYIKKFGRPQSVEALN 206 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 +H I + + L T+ P+ + + V++ ++ LG+GIA Sbjct: 207 QHKWIMYR------YKQSGRLLTLTMPLDGQLVEFSPTHQVTVDNGYAMASLASLGAGIA 260 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 L+P Y+ +D L+ + E T VY YP K+K F ++I K Sbjct: 261 LMPQYLARDLVQQGKLMLVSEPQRTDGQGVYIYYPSRKFVPAKVKVFIDYIIHK 314 >gi|167625942|ref|YP_001676236.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167355964|gb|ABZ78577.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 291 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 146/277 (52%), Gaps = 13/277 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT A+++L +S + +SRQIS LET + KLF+R R +++TE Sbjct: 2 FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQISALETRLASKLFHRTTRKVSVTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + + P G L+I + G+ + + +F++ YP++ Sbjct: 62 GRIYYQHCRQVLDGLEEAERAITNLQTTPRGLLKITAPVTYGEKTIAPLINDFVVQYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIRL ++ SS++ +KL + + A+P Y+ P S Sbjct: 122 EVKLNLSNQKVDLIDEGYDLAIRLGH-LEDSSMMAKKLSSRTQYVCASPSYISTYGIPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + EL++HN + G + D+ W + R+ L NS +++ + G GI Sbjct: 181 LSELEQHNCL-MGTM------DY-WRFQENGKTRNVRVRGTLSCNSGHALVDAAIKGIGI 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 LPDY V ++ LV ++E P ++ YP+ Sbjct: 233 VQLPDYYVDPFIEDGQLVTLLEQNRQPEEGIWALYPQ 269 >gi|323497510|ref|ZP_08102528.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323317593|gb|EGA70586.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 292 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 19/298 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++ D + L VF V GSFT AAE + +S++SR+I+ LET +G++L R R L LT Sbjct: 2 LNCDLNDLMVFATVVEKGSFTAAAEAYNTPKSNVSRKITRLETHLGVRLLERSTRSLRLT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + +L ++ KP G+LRI T++ +GQ+LL +L F L +P Sbjct: 62 EVGQRYYEYCRRIKDELNAADSAVESMLEKPQGRLRICTSLGVGQSLLSEHLANFCLQHP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI++ L L N+ +D+ + D A R+ + SSL+ ++L I++ YAAP E Sbjct: 122 DIELDLALTNRRVDLIEEGFDLAFRM-GDLADSSLVAKRLCEINLKLYAAP---DRGFEA 177 Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRP----IGEPRISCLQVNSYLSIMQYC 235 LS NL+ ++ E +W T +P + C + + + + Sbjct: 178 LS----HPSNLLDQPLMLMSAKERSADWQLTSKHEEYHVSFKPSVRC---DDFSMLKRMA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G GI LPDY+ K+ N L+ ++ D +Y YP T K+++ ++ Sbjct: 231 VQGLGITELPDYMAKEFEINGKLINVLPDWSFKPVALYALYPSHRGATPKVRSLLEYL 288 >gi|299138082|ref|ZP_07031262.1| transcriptional regulator, LysR family [Acidobacterium sp. MP5ACTX8] gi|298600012|gb|EFI56170.1| transcriptional regulator, LysR family [Acidobacterium sp. MP5ACTX8] Length = 311 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 12/299 (4%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MSFD + + V RSG F AA L++SQ ISR ++ LE +VGI+L R R + Sbjct: 1 MSFDDRLLNGVSALAAVVRSGGFAAAARSLNVSQPGISRAVARLEAQVGIRLLERTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT++G + + + LE L E V G+LR+ Q +L L FL Sbjct: 61 SLTDEGRRFYETIGPIVSALEDATSALAEGKVTVRGRLRVNMDPYFSQLILGPQLSGFLK 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP++++ L+ D+ D D IR +P + S+L+ R+L+ + A+P YLK Sbjct: 121 AYPELKVDLVTREGLGDLISDGYDLGIRFGEP-RPSTLVARRLLDTRVLTVASPGYLKKH 179 Query: 178 REPLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQY 234 P Q+L ++H +I F D P+ F W+ R I S L ++ ++ Sbjct: 180 GHPTDPQQLVAERHRMIDFRD--PETGRSFEWVFRKGRKEIKVETESQLMLSDVATMHAV 237 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 CV G GIA + + V + LV + D F +Y YP K +AF F+ Sbjct: 238 CVAGYGIAQVLELGVDAHLSSGRLVNLFPDWEDERFPLYAYYPSRQYLAPKTRAFLEFL 296 >gi|221640399|ref|YP_002526661.1| LysR family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221161180|gb|ACM02160.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] Length = 301 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F +V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + PSG LR++ D G LL L EFLL YPDI + + Sbjct: 66 YDRARRVLTDAGEADALVTSMQTAPSGHLRLSVATDFGVALLTPILAEFLLDYPDITVTM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ ++ SSL RKL A+P YL+ P+ I +L Sbjct: 126 VLNNRSVELISEGFDMAIRV-GDLEDSSLRARKLTETTRRMIASPGYLQRHGRPMKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 H L+ + + + P GEPR L VN S+++ V G GIA Sbjct: 185 TDHRLLY------HSTQAHGNVWRLLSPSGEPRQVRAPGFLTVNDGQSLLKAAVSGLGIA 238 Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+++ + LV ++ D+ + ++ YP K++AF +F+ Sbjct: 239 HLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFL 289 >gi|59711256|ref|YP_204032.1| LysR family DNA-binding transcriptional regulator [Vibrio fischeri ES114] gi|59479357|gb|AAW85144.1| predicted DNA-binding transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 290 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ + F VA + SFT AA L S + ISR+++ LE + IKL R R +++TE Sbjct: 2 IDWEGVTEFVAVAEAQSFTGAARALDTSVAQISRKVAALEDRLSIKLLIRTTRKVSVTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + L+ + E + P G+L+I +++ G+ L+ L +F+L+YP + Sbjct: 62 GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+L N+ +D+ D AIRL + + S+++ ++L + + A+P Y++ EP + Sbjct: 122 ELELVLSNQTLDLVEQDFDLAIRLGR-LTDSTMMAKRLSSRQVRVCASPSYIEKHGEPHT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL +HN + I + +E+ + R G + C NS ++ + G GI Sbjct: 181 LSELSQHNCLVGSLPIWRFIENKKEKSV--RVKGS--VHC---NSGAALTNAALKGLGIV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+ V+ D LV I+ P ++ YP + K++ F+ Sbjct: 234 QLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFL 284 >gi|313500217|gb|ADR61583.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 298 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 146/295 (49%), Gaps = 15/295 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS W+ + F VA SG FT AAE+L +S S ISRQI+ LE + +L YR R +TL+ Sbjct: 1 MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + E + + + +P G LR+ + G+ + + F+ LYP Sbjct: 61 EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + L N +D+ + D AIRL + + S L+ +L M+ A+P YL+ P Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179 Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238 S+ EL +HN L+ DL W D R I + + NS +++ + G Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LPDY V ++ N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 231 IGLCQLPDYYVLEHLNSGSLVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285 >gi|293392721|ref|ZP_06637040.1| contact-regulated protein A [Serratia odorifera DSM 4582] gi|291424838|gb|EFE98048.1| contact-regulated protein A [Serratia odorifera DSM 4582] Length = 298 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 21/300 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V SGSF+ AAE+L + S +SR + LE ++G+ L R R ++LT Sbjct: 1 MKANSDELITFVTVVESGSFSRAAERLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R +V + + + L ES +P G LR+ ++L EF LYP Sbjct: 61 QEGENYFRQVQKVLNDMAAAENALMESRQRPQGLLRVDAATPFVLHVLAPMAAEFRALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR+ + + SSL RKL+T + A+P YL+ P Sbjct: 121 EMSLSLVSSETFINLIERKVDIAIRIGE-LTDSSLKARKLMTSYRQVLASPAYLRQYGTP 179 Query: 181 LSIQELDKHNLITFGDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +++EL +H I F DL C + W AT L NS + Sbjct: 180 QTVEELAQHCCIGFNDLPALNRWPLACADGRQWEAT----------PALTSNSGETHRHL 229 Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 C+ G+GIA L D+++ ++ +LV I++ P + + Y + +L++F +F+ Sbjct: 230 CLHGNGIACLSDFMIGEDVKRGDLVPILQQHTLPLAMPINAVYYSDSAVSNRLRSFIDFV 289 >gi|162455419|ref|YP_001617786.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161166001|emb|CAN97306.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 327 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 148/309 (47%), Gaps = 21/309 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D + L VF VA + SFT AA +L + +S++SR ++ LE +G++L R R + LT Sbjct: 24 TMDLNHLSVFAAVAETASFTEAARRLGVPKSTVSRGVASLEASLGVRLLQRTTRSVALTT 83 Query: 62 QGSKL-HRVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G L R+ S + K T IE L E +PSG LR+ T D +L L F Y Sbjct: 84 AGHALVDRLGSRL--KALTEAIEGLPELEDEPSGTLRLTATADFATEVLAEILAAFCRRY 141 Query: 120 PDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 P I +++ L + +D+ + D A R L K + S+L+ RK+ +H+ YA+P YL Sbjct: 142 PRITVEMHLSTQPVDLVKEGYDAAFRFLTKQPRDSTLVARKVGELHLQFYASPAYLAARG 201 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++++L H+ + P ++ V R RI L VN + G Sbjct: 202 TPRTLEDLAGHDGVALIKTSPFGRDE------VSRAGARLRIRWL-VNDGFFAREVVRNG 254 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF---- 291 GI LLP ++V+ + LVR++ P+ V+ +P K A R+ + Sbjct: 255 GGIGLLPTFLVQQDVLAGGLVRVLPRWTAPTGGVFLVFPSGQHLPRKTVALRDHVVEALR 314 Query: 292 --LKARDWK 298 LKAR + Sbjct: 315 MQLKARAGR 323 >gi|260777406|ref|ZP_05886300.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260607072|gb|EEX33346.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 308 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 13/292 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V SGSF+ AAE+LH+++S++S++I+ LE E+GI+L R R L+LTE G Sbjct: 4 YSSIPVFVAVVESGSFSTAAEKLHITKSAVSKRINQLEDELGIRLLNRTTRKLSLTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + + E KP+GKL+I + G + + EFL LYPD++I Sbjct: 64 RYYDYVAQSLSLAQQGIDAVTELQGKPTGKLKITAPMSFGVLHVAPLVAEFLALYPDLEI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+++ +D+ D D IR+ + S+L+ ++L T A+ YL EP Sbjct: 124 DLQLEDQMVDLVQDGFDLGIRIGH-LPLSNLVAKRLATCRSILCASQSYLDEHGEPEKPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L HN + + W T + P G + L VN+ +I + + G GI Sbjct: 183 DLSLHNCLRYAYF----RGGSEW--TFESPTGPVSVVPKGKLVVNNSEAIRRALLEGLGI 236 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV + L IM P +VY +PE K++ F +FI Sbjct: 237 GQLPTFIVAKDIAAGKLKPIMTAYTLPPHSVYAVFPERKHLPLKVRVFVDFI 288 >gi|90578240|ref|ZP_01234051.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] gi|90441326|gb|EAS66506.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] Length = 289 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 141/289 (48%), Gaps = 13/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F VA SF AAE + S++SR+IS LE +G++L +R R + LTE G Sbjct: 5 DDMALFVEVANVMSFRQAAEITGVPNSTLSRRISALEKAIGLRLLHRTTRKIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + +L + + PSG +R++ ID + + L EF YP+I+++ Sbjct: 65 YYERCRRIVEEAKLAHQQLSDIAENPSGTVRVSAPIDFATHFIAPLLPEFSKQYPEIELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D++ +Y D AIR + +SSSLI RKL H + Y +P YL EP E Sbjct: 125 FDLSSRRMDMTSEYFDVAIRAGES-ESSSLIARKLANFHHYVYGSPAYLAQYGEPQLPDE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H + ++ +W + + ++ S L VNS I Q VL G+ LL Sbjct: 184 LTQHQCFSI-------VKSAHWAMHSEDKSADIKVNSKLFVNSIGMIKQLIVLNMGLGLL 236 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ D L RI+ D + +Y E K + F NFI Sbjct: 237 PQEMITDELAQGTLQRILPDWQSSPVPIY-AITETRLLPAKTRCFINFI 284 >gi|77464506|ref|YP_354010.1| LysR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77388924|gb|ABA80109.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides 2.4.1] Length = 313 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F +V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 18 EMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 77 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + PSG LR++ D G LL L EFLL YPDI + + Sbjct: 78 YDRARRVLTDAGEADALVTSMQTAPSGHLRLSVATDFGVALLAPILAEFLLDYPDITVTM 137 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ ++ SSL RKL A+P YL+ P+ I +L Sbjct: 138 VLNNRSVELISEGFDMAIRV-GDLEDSSLRARKLTETTRRMIASPGYLQRHGRPMKIDDL 196 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 H L+ + + + P GEPR L VN S+++ V G GIA Sbjct: 197 TDHRLLY------HSTQAHGNVWRLLSPSGEPRQVRAPGFLTVNDGHSLLKAAVSGLGIA 250 Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+++ + LV ++ D+ + ++ YP K++AF +F+ Sbjct: 251 HLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFL 301 >gi|88800479|ref|ZP_01116043.1| transcriptional regulator, LysR family protein [Reinekea sp. MED297] gi|88776809|gb|EAR08020.1| transcriptional regulator, LysR family protein [Reinekea sp. MED297] Length = 301 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 145/292 (49%), Gaps = 14/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V ++ +FT+AA QL L+ S++S+QIS LE +G++L R R ++ TE G Sbjct: 5 DSLIIFTTVVKANNFTNAAHQLGLTPSAVSKQISLLEDRLGVRLLNRTTRSVSPTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S + LE + +++ P G L+I+ T G+ +L +FL YPD+ Sbjct: 65 FFNRCSRLLEDLEEAEHMVKDLETSPRGTLKISATPTFGRAMLMKIFAQFLEQYPDVNFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L +K +D+ + D AI L +Q S L+ R + + + YL +P ++ E Sbjct: 125 LTLADKGLDLVREGIDLAIHL-GSLQDSRLVARPVARQKVILVGSKEYLAEHGQPEALNE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGI 241 L H ++ + DF + R I E +S VN ++ + + G G+ Sbjct: 184 LVNHFILMVSGI------DFAEPRWIKRFIKEAGLSNKDRRFTVNDLDTLCEAALNGMGL 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LP Y+++ D+ LV I+ D+ P T++ YPE + K +AF +F+ Sbjct: 238 AALPVYMIREHLDSGKLVHILPDIHFPVRTIHVVYPENRYLSAKSRAFVDFM 289 >gi|197335382|ref|YP_002155407.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197316872|gb|ACH66319.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 290 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ + F VA + SFT AA L S + ISR+++ LE + IKL R R +++TE Sbjct: 2 IDWEGVTEFVAVAEAQSFTGAARALDTSVAQISRKVAALEDRLSIKLLIRTTRKVSVTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + L+ + E + P G+L+I +++ G+ L+ L +F+L+YP + Sbjct: 62 GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+L N+ +D+ D AIRL + + S+++ ++L + + A+P Y++ EP + Sbjct: 122 ELELVLSNQTLDLVEQDFDLAIRLGR-LTDSTMMAKRLSSRQVRVCASPGYIEKHGEPHT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL +HN + I + +E+ + R G + C NS ++ + G GI Sbjct: 181 LSELSQHNCLVGSLPIWRFIENKKEKSV--RVKGS--VHC---NSGAALTNAALKGLGIV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+ V+ D LV I+ P ++ YP + K++ F+ Sbjct: 234 QLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFL 284 >gi|229523164|ref|ZP_04412571.1| transcriptional regulator [Vibrio cholerae TM 11079-80] gi|229339527|gb|EEO04542.1| transcriptional regulator [Vibrio cholerae TM 11079-80] Length = 291 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 148/289 (51%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T +++ + ++I+R+I LE + ++L RHAR LTLTE G + Sbjct: 4 DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ S + +L + E+ + SG++RI+ +L + ++ F+ YPDI I+ Sbjct: 64 FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++ N+ D+ D R+ P + SSLI RK+ + A+P YL + ++P +E Sbjct: 124 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPQYLSSHQQPTHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H L+ L+ + + V+ G + S L V + C G GI L+P Sbjct: 183 LHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNV-----VRSACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ ++ +LV+++ D + +Y Y K++ F +F+ Sbjct: 238 DVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286 >gi|126463346|ref|YP_001044460.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126105010|gb|ABN77688.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17029] Length = 301 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F +V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + PSG LR++ D G LL L EFLL YPDI + + Sbjct: 66 YDRARRVLTDAGEADALVTSMQTAPSGHLRLSVAADFGVALLTPILAEFLLDYPDITVTM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ ++ SSL RKL A+P YL+ P+ I +L Sbjct: 126 VLNNRSVELISEGFDMAIRV-GDLEDSSLRARKLTETTRRMIASPGYLQRHGRPMKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 H L+ + + + P GEPR L VN S+++ V G GIA Sbjct: 185 TDHRLLY------HSTQAHGNVWRLLSPSGEPRQVRAPGFLTVNDGHSLLKAAVSGLGIA 238 Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+++ + LV ++ D+ + ++ YP K++AF +F+ Sbjct: 239 HLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFL 289 >gi|163858793|ref|YP_001633091.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163262521|emb|CAP44824.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 304 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 139/289 (48%), Gaps = 12/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF V + GSF AA QL LS +++S+ I LE +G +L R R ++LTE GS + Sbjct: 7 LRVFRNVVQLGSFAQAARQLRLSPAAVSKNIGELEAHLGARLLQRTTRRMSLTEAGSLYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + L+ L PSG LR++ + L + L + FL YPD+ + L Sbjct: 67 EQISRILDDLDEAGRSLAPLQTGPSGVLRVSAPMSLTLSRLSAAIPAFLQAYPDLSLDLH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +DI + D AIR ++ SSL+ R L + AP Y + EP + Q L Sbjct: 127 LEDRRVDIIQEGYDLAIRGTDQLEDSSLVARPLTVLPHVLCGAPAYFQRHGEPDTPQALR 186 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 HN + F + +++ + TV P+ QVNS L++ G G++L+ Sbjct: 187 GHNCLRF--TLSGHADEWTFRRHGQTVRVPVR----GRYQVNSSLAVRDALRAGFGLSLV 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P V+D+ L ++ D +Y YP K++AF +F+ Sbjct: 241 PRTYVEDDLAQGRLRAVLNDWAMVDTYLYAVYPSRRHVAAKVRAFADFV 289 >gi|89094200|ref|ZP_01167142.1| putative transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] gi|89081455|gb|EAR60685.1| putative transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] Length = 301 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 143/287 (49%), Gaps = 8/287 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D + +F V + SF AEQ ++ S +S+ IS LE +G++L R R L LTE G Sbjct: 3 NLDDMLLFAQVVKLKSFRAVAEQRGVASSVVSKHISRLEKHLGVQLLIRTTRKLNLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + R ++ + + + + + +P G LRIA + GQ L + E+L LYPD++ Sbjct: 63 REFFRHCQQLESSVALAERAVSQHAEQPQGLLRIAAPMISGQYFLPAVIDEYLRLYPDMR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I+ + D+ D AIR + SSL R+LV +AYA+P YL+ P +I Sbjct: 123 VEMIIKDSFQDLVSSGFDLAIRT-GTLSDSSLRARRLVESRWYAYASPDYLQTHGTPSAI 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L HN + F E W T G+ ++ + +S +++ + V G GIA Sbjct: 182 DDLALHNCLQFSYQETGPHE---WPVTTGGKPGKVKVQGRFEASSLVTLREASVSGMGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P Y+V++ LV +++D I +Y YP K+ AF Sbjct: 239 FMPVYLVREQVKQGQLVAVLQDHIYRDVGIYAIYPNIRYVPRKISAF 285 >gi|254426809|ref|ZP_05040516.1| LysR substrate binding domain protein [Alcanivorax sp. DG881] gi|196192978|gb|EDX87937.1| LysR substrate binding domain protein [Alcanivorax sp. DG881] Length = 290 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 142/295 (48%), Gaps = 23/295 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD++ F V R GSF AA L +S S +SR ++ LET++G +L YR R LTLT+ G+ Sbjct: 4 WDRIEAFVEVVRLGSFARAARDLGVSSSHVSRLVARLETQLGTQLLYRTTRRLTLTDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +++ + + + +P+G LR+ G+ + + +FL +P + + Sbjct: 64 VYFDHCCQLFDGFQEALNAISDFQQQPTGVLRLTCATTFGERFIAPLVNDFLACHPQLSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL N+ +DI + D AIR + SSLI R+L + +P Y + P ++ Sbjct: 124 QLDFTNRRVDIVDEGFDVAIRT-GALPDSSLIARRLCPRREYVVGSPAYFERHARPHTLG 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 EL HN C++ + W VD G+ R S +Q NS ++++ G Sbjct: 183 ELGGHN----------CLQGSSEQWAFDVD---GQHRHSKVQGNWKGNSGVALLDAARKG 229 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LPDY V D+ +LV +++ V+ YP + K++ F +F+ Sbjct: 230 IGLVQLPDYYVADDLARGDLVSVLDQYACTHTAVWVVYPRHRHLSPKVRQFVDFL 284 >gi|156978116|ref|YP_001449022.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116] gi|156529710|gb|ABU74795.1| hypothetical protein VIBHAR_06921 [Vibrio harveyi ATCC BAA-1116] Length = 289 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 15/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + ISR++S LE + +KL +R R ++LTE G Sbjct: 3 NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + +P G L++ + G+ L L +F+ YP + Sbjct: 63 QLYYQQCKNLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHQFIEKYPQVN 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L N+ +D+ D AIRL + +Q SSLI ++L + ++ A+P YL EP ++ Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181 Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 EL H L+ D W + R+S ++ NS +++ G G+ Sbjct: 182 SELSHHQCLVGTADY---------WHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGL 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ DN LV ++ D ++ YP+ + K++ +F+ Sbjct: 233 VQLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFL 284 >gi|153832732|ref|ZP_01985399.1| transcriptional regulator [Vibrio harveyi HY01] gi|148871077|gb|EDL69961.1| transcriptional regulator [Vibrio harveyi HY01] Length = 289 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 15/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + ISR++S LE + +KL +R R ++LTE G Sbjct: 3 NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + +P G L++ + G+ L L F+ YP + Sbjct: 63 QLYYQQCKHLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHRFIEKYPQVN 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L N+ +D+ D AIRL + +Q SSLI ++L + ++ A+P YL EP ++ Sbjct: 123 LELNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181 Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 EL H L+ D W + R+S ++ NS +++ G G+ Sbjct: 182 SELSHHQCLVGTADY---------WHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGL 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ DN LV ++ D ++ YP+ + K++ +F+ Sbjct: 233 VQLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFL 284 >gi|58039186|ref|YP_191150.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H] gi|58001600|gb|AAW60494.1| Transcriptional regluator LysR family [Gluconobacter oxydans 621H] Length = 305 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 137/288 (47%), Gaps = 5/288 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F VA SGSFTHAA+ L + +S++S + LE +G +L R R + LT+ G Sbjct: 5 DLLRIFIRVAESGSFTHAADTLQMPRSTVSTAVQELENRLGTRLLARTTRSVRLTDDGRM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E + + S + G +++ +G+ ++ L EFL YP + ++ Sbjct: 65 FQQTALRLLGDFEDAENRFRLHSSQTRGHVKVNLPSRIGRLIVAPALPEFLDRYPGLDVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ I+++ D DC +R+ P+Q SSLI RKL + + A+P YL P + + Sbjct: 125 LGMTDRSINLAEDGTDCVLRV-GPLQDSSLIGRKLGLLPVFNVASPSYLAQHGTPQNPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + + +ED+ W R P + VNS + C+ G G+A LP Sbjct: 184 LSAHQAVLYASPTTGRIEDWEW-EHDGREDSRPVRGRVTVNSAEGAVACCLAGLGVAQLP 242 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V + LV I+ + YP + +L+ F ++ Sbjct: 243 AYDVLPHIRRGELVDILPQWRAAPLPMTLLYPHRTHLSRRLEVFTEWL 290 >gi|259417823|ref|ZP_05741742.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] gi|259346729|gb|EEW58543.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] Length = 301 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 142/292 (48%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQTAPSGLLRISVATDFGVNHLSPVLSEFLRDFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ SSL RKL A+P YL+ P I +L Sbjct: 126 VLNNRFVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMVASPEYLEKYGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSNQSSGNV----WKLTA--PSGEKRQVRSTGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ + ++EDV+ + +Y YP K++AF +F+ Sbjct: 239 YLPSYLYAE-AKAEGLVEDVMPQLPVETLGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|24371967|ref|NP_716009.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24345816|gb|AAN53454.1|AE015485_3 transcriptional regulator, LysR family [Shewanella oneidensis MR-1] Length = 295 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 144/295 (48%), Gaps = 13/295 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A ++L LS+S+IS++IS LE +GI+L R R L+LT+ G+ Sbjct: 4 FSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + E P G LRI+ + G+ + + EFL YPDIQ+ Sbjct: 64 RYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RK+ A+P YL P++ Sbjct: 124 QMQMDDKITDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPAYLTQHGLPMTPC 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 EL +HN + + + W + P G R+ QVN+ +I Q C+ G GI Sbjct: 183 ELTQHNCLFYSYF----QDGVEW--SFHSPDGMQRVQPKGNYQVNNSDAINQACLDGLGI 236 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 A LP +IV+ + +L ++ D P +Y YP+ K+ F+ K Sbjct: 237 ANLPRFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFLMAK 291 >gi|92113336|ref|YP_573264.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796426|gb|ABE58565.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 298 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 132/246 (53%), Gaps = 6/246 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V R+GSFT AA +L +S+S S++++ LE E+ + L R R L LTE G Sbjct: 5 DALRVFVEVVRAGSFTAAARRLSISKSLASKRVAALEDELSVNLLNRSTRSLRLTEAGQI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V +L++ + ++Q + +P G+L+++ + G L F+ YPD+ ++ Sbjct: 65 YYEHGLRVIEELQSAEAQVQSVTSQPRGQLKVSAQVSFGFMYLAAPTTAFMRRYPDVSVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ + D D AIR+ P+ SSL+ R L + YAAP YL PL ++ Sbjct: 125 ILLEDQRFEPIDDSVDLAIRM-GPLPPSSLVSRPLCKVVYGLYAAPDYLARAGRPLHPRD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + ++ + +G+ +W +++ +P+ S L +N+ L +++ G G+A L Sbjct: 184 IADYDTVFYGNYDLGA----HWRFSLNGQPLDIEPNSRLVINNLLGVVEAAKSGFGLAYL 239 Query: 245 PDYIVK 250 P + + Sbjct: 240 PTFAAR 245 >gi|163855507|ref|YP_001629805.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163259235|emb|CAP41535.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 300 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 123/248 (49%), Gaps = 8/248 (3%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+ D D+LR +F VAR G+F A+E L + S++SR+IS E + +KLF+R R Sbjct: 1 MNRDIDRLRDMALFAEVAREGTFVKASETLGVPVSTLSRRISEFEKGINVKLFHRSTRKT 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLTE G++ ++ ++ ++ EL + P G+LR++ D G L + E Sbjct: 61 TLTEVGARYYQQIDDILQQVRHVNDELDSETSTPGGQLRVSMPADFGAYLADVHFDELRA 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP I + L + ++D+ + D +I + P +S LI R++ T+H H Y+AP YL+ Sbjct: 121 AYPSITYEFFLTSDEVDLMVGRYDVSILIGDPPSASRLIARRIGTVHRHLYSAPEYLERH 180 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCV 236 R P ++L+ H + P WL + S L +NS I Q + Sbjct: 181 RVPAKPEQLNSHTCL----FPPPVESGGGWLMRNGPEVIHVNPSPLLMINSQAVIRQLVM 236 Query: 237 LGSGIALL 244 G GI L Sbjct: 237 HGIGIGQL 244 >gi|114327592|ref|YP_744748.1| LysR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315766|gb|ABI61826.1| transcriptional regulators, LysR family [Granulibacter bethesdensis CGDNIH1] Length = 331 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 144/290 (49%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D R+F V SFT AA+ L + +SS+S + LE VG +L +R R + T+ G+ Sbjct: 35 DLFRIFSRVVECASFTRAADTLGMPRSSVSAAVQELEGRVGARLLHRTTRKVAPTQDGAA 94 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ V +E T+ ++ + +PSG+LRI +G+ ++ L EFL LYP I I Sbjct: 95 FYQRCQRVIADVEDTENLFRQMAAQPSGRLRIDVPGRIGRLIIAPALPEFLDLYPQINID 154 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D DC +R+ P+ S LI R + + + A+P YL P ++ + Sbjct: 155 LGVTDRAVNLVEDSLDCVLRV-GPLSDSGLIARPIGRLALINVASPAYLARHGMPQALDD 213 Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H + + +ED+ W+ T+ R++ VNS + + C+ G G+ Sbjct: 214 LGQHWAVNYASPSSGRVEDWEWMEDGTLHTLPMRGRVT---VNSAEAYIACCLAGLGLIQ 270 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V+ D L+ IM + + YP + +L+ F +++ Sbjct: 271 IPAYDVRSHLDTGELIEIMPEYRADPMPMTLLYPHRQHLSRRLQIFADWL 320 >gi|262165288|ref|ZP_06033025.1| transcriptional regulator LysR family [Vibrio mimicus VM223] gi|262025004|gb|EEY43672.1| transcriptional regulator LysR family [Vibrio mimicus VM223] Length = 326 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 147/289 (50%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T +++ + ++I+R+I LE + ++L RHAR LTLTE G + Sbjct: 39 DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 98 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ S + +L + E+ + SG++RI+ +L + ++ F+ YPDI I+ Sbjct: 99 FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 158 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++ N+ D+ D R+ P + SSLI RK+ + A+P YL N +P +E Sbjct: 159 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPTYLANHPQPTHAEE 217 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H L+ L+ + + V+ G + S L V + C G GI L+P Sbjct: 218 LHQHQLLKGYPLLKWQLTNSQGETVVNTDRGRFQASALNV-----VRSACSEGLGITLMP 272 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++++ + +LV+++ D + +Y Y K++ F +F+ Sbjct: 273 DVMLREYLGDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321 >gi|163737129|ref|ZP_02144547.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis BS107] gi|163740458|ref|ZP_02147852.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161386316|gb|EDQ10691.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161389733|gb|EDQ14084.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis BS107] Length = 308 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 13 EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +PDI + + Sbjct: 73 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNM 132 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ SSL RKL A+P YL+ P I +L Sbjct: 133 VLNNRYVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRPQKIDDL 191 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + M W T P GE R L VN S++ + G GIA Sbjct: 192 NMHKLLHYSNQSSGSM----WKITA--PSGEKRQVRTSGWLSVNDGQSLLNAAISGLGIA 245 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ D ++EDV+ PS +Y YP K++AF +F+ Sbjct: 246 YLPSYLYSD-AMAEGLVEDVM-PSLPMETQGIYAVYPPGRFTQPKVRAFIDFL 296 >gi|217973116|ref|YP_002357867.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217498251|gb|ACK46444.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 292 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 152/296 (51%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + SFT AA++L++S + +SRQ+S LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ +P ++ Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL++HN + + + N+ V+ G R L NS ++ + G G Sbjct: 183 ELNQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++D+ N L+ +++ ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEDDINAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287 >gi|269959553|ref|ZP_06173935.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835740|gb|EEZ89817.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 289 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 15/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + ISR++S LE + +KL +R R ++LTE G Sbjct: 3 NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + +P G L++ + G+ L L +F+ YP + Sbjct: 63 QLYYQQCKHLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHQFIEKYPQVN 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L N+ +D+ D AIRL + +Q SSLI ++L + ++ A+P YL EP ++ Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181 Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 EL H L+ D W + R+S ++ NS +++ G G+ Sbjct: 182 SELSHHQCLVGTADY---------WHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGL 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ DN LV ++ D ++ YP+ + K++ +F+ Sbjct: 233 VQLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFL 284 >gi|158340507|ref|YP_001521501.1| LysR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310748|gb|ABW32362.1| transcriptional regulator, LysR family [Acaryochloris marina MBIC11017] Length = 311 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 147/288 (51%), Gaps = 6/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA SF A+ L LS S++S+ ++ LE ++G+KLF+R R ++LT G + Sbjct: 6 NIKTFVRVAEVESFARASNILGLSTSAVSKAVARLEADLGVKLFHRTTRSVSLTPDGKQF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + E+Q S P G+L I+ G+ L L+ F+ YP+I + + Sbjct: 66 YEGCQQLLLEFDALTAEVQGSRATPRGQLTISAPAAFGRLCLVPLLQSFMQSYPEITLNI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +D+ ID++ D IR + S++LI +LVT + A+PHYL EP ++L Sbjct: 126 SIDDHAIDLAAQGIDIVIRTGQLADSANLIASRLVTYRLVVCASPHYLAEHGEPQHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H+ + F + P F W+ +D + +S L ++ ++++ + G++ +P Sbjct: 186 QRHSCLNFRN--PDTGRFFPWVLEIDGAVESYTVSGPLVFDNADAVVRSSISSLGLSQMP 243 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ K+ LV ++ P V+ CY + + +++AF F+ Sbjct: 244 SFLAKEAVSRGQLVEVLNSYQPPETPVWICYLDRNFVSPRIRAFVEFM 291 >gi|332559395|ref|ZP_08413717.1| Transcriptional regulator, LysR family protein [Rhodobacter sphaeroides WS8N] gi|332277107|gb|EGJ22422.1| Transcriptional regulator, LysR family protein [Rhodobacter sphaeroides WS8N] Length = 301 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 140/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F +V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + PSG LR++ D G LL L EFLL YPDI + + Sbjct: 66 YDRARRVLTDAREADALVTSMQTAPSGHLRLSVATDFGVALLTPILAEFLLDYPDITVTM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ ++ + D AIR+ ++ SSL RKL A+P YL+ P+ I +L Sbjct: 126 VLNNRSAELISEGFDMAIRV-GDLEDSSLRARKLTETTRRMIASPGYLQRHGRPMKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 H L+ + + + P GEPR L VN S+++ V G GIA Sbjct: 185 TDHRLLY------HSTQAHGNVWRLLSPSGEPRQVRAPGFLTVNDGQSLLKAAVSGLGIA 238 Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+++ + LV ++ D+ + ++ YP K++AF +F+ Sbjct: 239 HLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFL 289 >gi|330820755|ref|YP_004349617.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327372750|gb|AEA64105.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 310 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 147/301 (48%), Gaps = 27/301 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++++++ + LE + +KL R R L +T G+ Sbjct: 4 FDAMQAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVKLLNRTTRRLNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++S P G+LR+ L + +L L F YPDIQ+ Sbjct: 64 AFYERALRLLADMDDAETSLSDASALPRGRLRVDVPSPLARLILVPALPAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + + SL+ R++ + + YAAP YL+ P + Sbjct: 124 DMGVSDRRVDLIGENVDCVVRGGE-LSDQSLMARRVGDLQLGVYAAPAYLERMGRPAHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIM 232 EL+ H ++ F G + P M+ G+ RIS L V+ + + Sbjct: 183 ELENTGHRIVGFRWARTGRVFPYAMQR-----------GDERISVQGRHVLAVDDGNAYL 231 Query: 233 QYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G G+ LPDY+ + N L+ + ED + +Y +P + KL+ F ++ Sbjct: 232 AAGLAGLGVLWLPDYMARAPRANGELLPLFEDWRLDTMPLYVAFPPNRHVSAKLRVFIDW 291 Query: 290 I 290 I Sbjct: 292 I 292 >gi|99082300|ref|YP_614454.1| LysR family transcriptional regulator [Ruegeria sp. TM1040] gi|99038580|gb|ABF65192.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040] Length = 301 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 143/293 (48%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ SSL RKL AAP YL+ P I +L Sbjct: 126 VLNNRFVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMVAAPEYLEKYGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSNQSSGNV----WKLTA--PSGEKRQVRSTGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290 LP Y+ + ++EDV+ PS V Y YP K++AF +F+ Sbjct: 239 YLPSYLYAE-AKAEGLVEDVM-PSLPVETLGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|254509622|ref|ZP_05121689.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] gi|221533333|gb|EEE36321.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] Length = 301 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFSNVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +YPDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSDPSGLLRISVATDFGVNHLSPVLSDFLSVYPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL AAP Y++ P I +L Sbjct: 126 VLNNRYVELISEGFDVAVRIGE-LEDSTLRARKLTETVKRMVAAPSYIEQFGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSSQSSGSV----WKLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ D + +V M + +Y YP K++AF +F+ Sbjct: 239 HLPSYLYADALKSGEVVDAMPSLPDEVQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|28900071|ref|NP_799726.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260880646|ref|ZP_05893001.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|28808354|dbj|BAC61559.1| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|308091857|gb|EFO41552.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] Length = 307 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V GSF+ AA+QL+L++S+IS++I+ LE ++GI+L R R L+LTE G + Sbjct: 7 LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ + + + E P G+L+I + G + + EFL YP I++ L Sbjct: 67 EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++K +D+ D D IR+ + + SS+LI ++L A+P YL P +L Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LSSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + + ++ ++ P+ + + VN+ +I Q + GSGIA LP + Sbjct: 186 SHNCLRYSYF--RGGVEWMFINNGSEYKVLPKGNFI-VNNSEAIRQLLLRGSGIAQLPTF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + NL +ME+ P +Y +PE K++AF +FI Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFI 288 >gi|114763753|ref|ZP_01443147.1| transcriptional regulator, LysR family protein [Pelagibaca bermudensis HTCC2601] gi|114543754|gb|EAU46767.1| transcriptional regulator, LysR family protein [Roseovarius sp. HTCC2601] Length = 301 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +P+I + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLAEFPEITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPAYFEKFGRPSRIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + W T P GE R L VN S++ C+ G GIA Sbjct: 185 NEHKLLHYSNQSSGNV----WKVTA--PSGEKRQVRTAGWLSVNDGQSLLNACIAGLGIA 238 Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ D LV + D+ + +Y YP K++AF +F+ Sbjct: 239 YLPSYLYADAMKQGLVEDAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|319427941|gb|ADV56015.1| transcriptional regulator, LysR family [Shewanella putrefaciens 200] Length = 294 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 138/277 (49%), Gaps = 13/277 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V SGSF+ A ++L LS+S++S++I+ LE +GI+L +R R L+LTE G+ Sbjct: 4 FSALPIFVTVVESGSFSAAGQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E P G LRI+ + G+ + + EFL YPDIQ+ Sbjct: 64 RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RKL AA YL P + Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 L +HN + + + W + P G R+ QVN+ +I Q C+ G GI Sbjct: 183 ALTQHNCLFYSYF----QDGVEW--SFQSPNGVQRVQPKGNYQVNNSDAIHQACLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275 A LP +IV+ + R ++ D P +Y YP+ Sbjct: 237 ANLPRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQ 273 >gi|170691786|ref|ZP_02882950.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170143070|gb|EDT11234.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 301 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AAE LH+S+++++ + LE + ++L R R + +T G Sbjct: 4 FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTHLVQQLEARLRVRLLNRTTRRINVTPDGI 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + L +S P G+LR+ L + +L L FL YPDIQ+ Sbjct: 64 AYYERVTRLLADMDDAETSLSSASAAPRGRLRVDVPSPLARLILIPALPAFLARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R +P S++ R++ + + +A+P YL P Sbjct: 124 DMGVSDRTVDMIGENVDCVVRGGEP-NDQSIVARRVADLALGVFASPGYLALAGVPSHPA 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G+L P M A V G ++ N+YL+ V Sbjct: 183 ELENSHHRIVGFSWGRAGNLYPAVMRRAGETAKVQ---GRYALAVDDGNAYLAA---GVA 236 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ K + LV + ED +Y YP + KL+ F +++ Sbjct: 237 GLGIMWLPRYMSKAHLKRRELVALFEDWQLDPMPLYIAYPPNRHVSAKLRVFIDWV 292 >gi|254475739|ref|ZP_05089125.1| transcriptional regulator, LysR family [Ruegeria sp. R11] gi|214029982|gb|EEB70817.1| transcriptional regulator, LysR family [Ruegeria sp. R11] Length = 301 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL YP+I + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDYPEITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ SSL RKL A+P YL+ P I +L Sbjct: 126 VLNNRYVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + M W T P GE R L VN S++ + G GIA Sbjct: 185 NTHKLLHYSNQSSGSM----WKITA--PSGEKRQVRTSGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ D ++EDV+ PS +Y YP K++AF +F+ Sbjct: 239 YLPSYLYSD-AMAEGLVEDVM-PSLPRETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|146279021|ref|YP_001169180.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145557262|gb|ABP71875.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17025] Length = 301 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + + PSG LRI+ D G +LL L EFL YP I + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQIAPSGLLRISVATDFGVSLLSPILGEFLQEYPGITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ SSL RKL AAP Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAIRVGE-LEDSSLRARKLTETTRRMIAAPRYFERHGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + W + P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSNQANGNV----W--KITSPTGEKRQVRTAGWLTVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D LV + + + +Y YP K++AF +F+ Sbjct: 239 YLPSFLFADAMRDGLVEEAIPGLPVETLGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|283783992|ref|YP_003363857.1| LysR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282947446|emb|CBG86993.1| LysR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 305 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSVLQEMAAAETEIMETRTTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI + L+ I++ D AIR K + SSL R L T + A+P Y+ P Sbjct: 121 DITLSLVSSETFINLIERKVDVAIRAGK-LTDSSLRARPLFTSYRKIIASPEYIARFGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 ++++L +H + F + P + W +A D + E I C + NS ++ Q C+ G Sbjct: 180 ETVEDLKQHLCLGFSE--PVSLN--TWPVACCDGQLHE--IECGISSNSGETLKQLCLTG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV +M D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDREIARGELVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|197336325|ref|YP_002156510.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197317815|gb|ACH67262.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 291 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 9/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V +GS+T A+ + + ++I+R+I LE + I+L RHAR L+LTE G K Sbjct: 4 DDLNLFRQVVENGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTEAGQK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + L T L E +GKL+IA +L + ++Q L +F+LLYPDI I Sbjct: 64 FYDECAPILATLVNTSEYLGEECRGAAGKLKIAAPSNLTKRMIQPILNKFMLLYPDISIN 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + N+ + D R+ K + SSLI R++ ++ A+P YL+ EP QE Sbjct: 124 LTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPTYLEKNSEPTHAQE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L KH+L+ L+ + + + + G S L V I C G GI L+P Sbjct: 183 LHKHSLLKGNPLMRWRLTNRDGESVTITDAGRFEASELNV-----IRMACSNGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D ++ + +L+R++ D +Y Y K++ F +F+ Sbjct: 238 DIMISQYLEEGSLIRVLSDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285 >gi|59712297|ref|YP_205073.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|59480398|gb|AAW86185.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 291 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 9/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V +GS+T A+ + + ++I+R+I LE + I+L RHAR L+LTE G K Sbjct: 4 DDLNLFRQVVENGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTEAGQK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + L T L E +GKL+IA +L + ++Q L +F+LLYPDI I Sbjct: 64 FYDECAPILATLVNTSEYLGEECRGAAGKLKIAAPSNLTKRMIQPILNKFMLLYPDISIN 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + N+ + D R+ K + SSLI R++ ++ A+P YL+ EP QE Sbjct: 124 LTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPSYLEKNSEPTHAQE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L KH+L+ L+ + + + + G S L V I C G GI L+P Sbjct: 183 LHKHSLLKGNPLMRWRLTNKDGESVTITDAGRFEASELNV-----IRMACSNGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D ++ + +L+R++ D +Y Y K++ F +F+ Sbjct: 238 DIMISQYLEEGSLIRVLSDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285 >gi|15641062|ref|NP_230694.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587378|ref|ZP_01677148.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|121728178|ref|ZP_01681213.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|147674833|ref|YP_001216517.1| LysR family transcriptional regulator [Vibrio cholerae O395] gi|153800951|ref|ZP_01955537.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] gi|153819385|ref|ZP_01972052.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|153822372|ref|ZP_01975039.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|153824937|ref|ZP_01977604.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] gi|153828117|ref|ZP_01980784.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] gi|227081222|ref|YP_002809773.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|254226381|ref|ZP_04919969.1| transcriptional regulator, LysR family [Vibrio cholerae V51] gi|254291730|ref|ZP_04962516.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|254848178|ref|ZP_05237528.1| transcriptional regulator [Vibrio cholerae MO10] gi|297578653|ref|ZP_06940581.1| transcriptional regulator [Vibrio cholerae RC385] gi|298498842|ref|ZP_07008649.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9655514|gb|AAF94208.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548381|gb|EAX58443.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|121629575|gb|EAX61998.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|124123542|gb|EAY42285.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] gi|125621070|gb|EAZ49416.1| transcriptional regulator, LysR family [Vibrio cholerae V51] gi|126510066|gb|EAZ72660.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|126520079|gb|EAZ77302.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|146316716|gb|ABQ21255.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|148876359|gb|EDL74494.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] gi|149741449|gb|EDM55479.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] gi|150422323|gb|EDN14284.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|227009110|gb|ACP05322.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|227012865|gb|ACP09075.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|254843883|gb|EET22297.1| transcriptional regulator [Vibrio cholerae MO10] gi|297536247|gb|EFH75080.1| transcriptional regulator [Vibrio cholerae RC385] gi|297543175|gb|EFH79225.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 299 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 147/289 (50%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T +++ + ++I+R+I LE + ++L RHAR LTLTE G + Sbjct: 12 DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ S + +L + E+ + SG++RI+ +L + ++ F+ YPDI I+ Sbjct: 72 FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++ N+ D+ D R+ P + SSLI RK+ + A+P YL + +P +E Sbjct: 132 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEE 190 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H L+ L+ + + V+ G + S L V + C G GI L+P Sbjct: 191 LHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNV-----VRSACSEGLGITLMP 245 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ ++ +LV+++ D + +Y Y K++ F +F+ Sbjct: 246 DVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 294 >gi|170725485|ref|YP_001759511.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810832|gb|ACA85416.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 303 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 146/291 (50%), Gaps = 9/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V SGSF+ AA +L +S+S++S+++ LE ++G++L +R R L+LTE G Sbjct: 4 FSAIPVFVAVIESGSFSQAASRLGISKSAVSKRVRQLEDKLGVQLLHRTTRQLSLTEAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + Y + + P G+L++ + + G+ + + +FL YPDI + Sbjct: 64 RYFEYALKSYIAAAEGVDSVTQLQGNPKGELKVNSPMSFGRLHIAPLVADFLAKYPDITL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +++D++ +D+ D AIR +Q S+LI R+L AAP YLK PL Sbjct: 124 NMVMDDRVVDLVEGGFDLAIRAGS-LQDSTLIARRLAPCRSVICAAPEYLKKYGTPLIPT 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L +HN I + W +D + ++S +VN+ ++ + + G GIA Sbjct: 183 DLSRHNCINYAYFSGGS----EWTFHMDTGPLKVKVSGNYRVNNSEALQKAILSGLGIAK 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P +IV + LV ++ D P T Y +PE K++ F +FI Sbjct: 239 IPTFIVGQDIAEGKLVPLLTDYQLPMQTFYAVFPERQHLPAKVRVFLDFIL 289 >gi|160875639|ref|YP_001554955.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|160861161|gb|ABX49695.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|315267828|gb|ADT94681.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 292 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 151/296 (51%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + SFT AA++L++S + +SRQ+S LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ +P ++ Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL +HN + + + N+ V+ G R L NS ++ + G G Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++D+ N L+ +++ ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEDDINAGHLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287 >gi|194365744|ref|YP_002028354.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348548|gb|ACF51671.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 297 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 140/291 (48%), Gaps = 9/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F VA++GSF AA ++ + ++ SR+I LE ++G++L +R R LTLT+ Sbjct: 2 IDLNDVALFVQVAKAGSFAEAARRIGMPSNTASRRIQQLEEQLGVRLLHRSTRKLTLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + E L +EL E S P GK+R+A +D ++ FL +P + Sbjct: 62 GEGLYARSVEQIEALADATLELSEGSEVPVGKVRVAAPVDFFNWFQLEWVQSFLQAHPRV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ +L++ D+ D D AIR + +LI RK+ A+P YL++ P + Sbjct: 122 RLEFVLNDARADLVADGIDVAIR-GGAVTGPTLIARKVGNNRAVLVASPAYLESRGAPSA 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++L H+ I +P W L D P NS L++ + CV G GI Sbjct: 181 LEDLSTHDCIA----VPSGSGRTQWRLMGPDGPAEVEVRGRFSANSALALTKACVAGMGI 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 ALL + +V LV+++ D ++ Y + AF +F Sbjct: 237 ALLTEAMVAQPLREGKLVQVLPDYRIDGLELFVVYQSRRQLPRAASAFVDF 287 >gi|304409008|ref|ZP_07390629.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307303011|ref|ZP_07582766.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|304352829|gb|EFM17226.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306913371|gb|EFN43793.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 292 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 151/296 (51%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + SFT AA++L++S + +SRQ+S LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ +P ++ Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL +HN + + + N+ V+ G R L NS ++ + G G Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++D+ N L+ +++ ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEDDINAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287 >gi|126174633|ref|YP_001050782.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|125997838|gb|ABN61913.1| transcriptional regulator, LysR family [Shewanella baltica OS155] Length = 292 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 151/296 (51%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + SFT AA++L++S + +SRQ+S LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ +P ++ Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL +HN + + + N+ V+ G R L NS ++ + G G Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++D+ N L+ +++ ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEDDINAGRLLSLLDGHREAKEGIWAIYPQNRHLSAKIRVLVDYLAEK 287 >gi|89069953|ref|ZP_01157286.1| transcriptional regulator, LysR family protein [Oceanicola granulosus HTCC2516] gi|89044507|gb|EAR50635.1| transcriptional regulator, LysR family protein [Oceanicola granulosus HTCC2516] Length = 295 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 140/292 (47%), Gaps = 18/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G + Sbjct: 1 MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + PSG LRI+ D G N L L +FL +P+I + ++ Sbjct: 61 DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLQEFPEITVNMV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ +++ + D A+R+ + ++ S+L RKL AAP Y + P I +L+ Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIAAPSYFEEYGRPERIDDLN 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 +H L+ + + + W T P GE R L VN S++ C+ G GIA Sbjct: 180 EHKLLHYSNQSNGSV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNACISGLGIAY 233 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290 LP ++ D L + + +V P V Y YP K++AF +F+ Sbjct: 234 LPSFLYAD--ALAKGLVEVAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 283 >gi|229505356|ref|ZP_04394866.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286] gi|229510974|ref|ZP_04400453.1| transcriptional regulator LysR family [Vibrio cholerae B33] gi|229515431|ref|ZP_04404890.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21] gi|229518095|ref|ZP_04407539.1| transcriptional regulator LysR family [Vibrio cholerae RC9] gi|229525658|ref|ZP_04415063.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis VL426] gi|229529860|ref|ZP_04419250.1| hypothetical protein VCG_002961 [Vibrio cholerae 12129(1)] gi|229608375|ref|YP_002879023.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236] gi|5565924|gb|AAD45271.1| AphB [Vibrio cholerae] gi|229333634|gb|EEN99120.1| hypothetical protein VCG_002961 [Vibrio cholerae 12129(1)] gi|229339239|gb|EEO04256.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis VL426] gi|229344810|gb|EEO09784.1| transcriptional regulator LysR family [Vibrio cholerae RC9] gi|229347200|gb|EEO12160.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21] gi|229350939|gb|EEO15880.1| transcriptional regulator LysR family [Vibrio cholerae B33] gi|229357579|gb|EEO22496.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286] gi|229371030|gb|ACQ61453.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236] Length = 291 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 147/289 (50%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T +++ + ++I+R+I LE + ++L RHAR LTLTE G + Sbjct: 4 DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ S + +L + E+ + SG++RI+ +L + ++ F+ YPDI I+ Sbjct: 64 FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++ N+ D+ D R+ P + SSLI RK+ + A+P YL + +P +E Sbjct: 124 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H L+ L+ + + V+ G + S L V + C G GI L+P Sbjct: 183 LHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNV-----VRSACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ ++ +LV+++ D + +Y Y K++ F +F+ Sbjct: 238 DVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286 >gi|86137203|ref|ZP_01055781.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] gi|85826527|gb|EAQ46724.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] Length = 305 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 19/304 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LET +G +L R R ++ TE G Sbjct: 6 EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLETRLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVSSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ SSL RKL A+P YL+ P I +L Sbjct: 126 VLNNRYVELISEGFDMALRIGE-LEDSSLKARKLTETTKRMIASPSYLEQFGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 185 NSHKLLHYSNQSSGNV----WKITA--PSGEKRQVRTTGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-----LKA 294 LP Y+ + LV +M ++ + +Y YP K++AF +F+ + Sbjct: 239 YLPSYLYSEAMEEGLVEDVMPNLPMETQGIYAVYPPGKFTQPKVRAFIDFLAHSFAGKDS 298 Query: 295 RDWK 298 DW+ Sbjct: 299 EDWR 302 >gi|254254447|ref|ZP_04947764.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124899092|gb|EAY70935.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 322 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AAE LH+S+++++ + LE + ++L R R L +T G Sbjct: 22 FDAMRAFIRVVEAGSFTKAAETLHMSKTTVTHLVQQLEARLRVRLLNRTTRRLNVTPDGI 81 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +S P G+LR+ + +L L FL YPDIQ+ Sbjct: 82 AYYERVVRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 141 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +DI + DC +R +P S++ R++ + + +A+P YL P Sbjct: 142 DMGVSDRTVDIIRENVDCVVRGGEP-ADRSMVARRVAGLSLGVFASPRYLALAGTPSHPA 200 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G+L P M + V G ++ N+YL+ V Sbjct: 201 ELENSHHRIVGFSWGRAGNLYPLVMHRRDETINVQ---GRYALAVDDGNAYLAA---GVA 254 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ K + LV + +D +Y CYP + KL+ F +++ Sbjct: 255 GLGIMWLPHYMAKAAIEQRELVALFDDWQLDPMPLYVCYPPNRHVSPKLRVFIDWV 310 >gi|26988347|ref|NP_743772.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24983097|gb|AAN67236.1|AE016350_9 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 15/295 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS W+ + F VA SG FT AAE+L +S S ISRQI+ LE + +L YR R +TL+ Sbjct: 1 MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + E + + + +P G LR+ + G+ + + F+ LYP Sbjct: 61 EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + L N +D+ + D AIRL + + S L+ +L M+ +P YL+ P Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCVSPAYLERYGRP 179 Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238 S+ EL +HN L+ DL W D R I + + NS +++ + G Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LPDY V ++ N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 231 IGLCQLPDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285 >gi|209694335|ref|YP_002262263.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio salmonicida LFI1238] gi|208008286|emb|CAQ78432.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio salmonicida LFI1238] Length = 290 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 146/292 (50%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ + F VA + SFT AA+ L S + ISR+++ LE + IKL R R +++TE Sbjct: 2 INWEGVTEFVAVAEAQSFTGAAKALDTSVAQISRKVAALEERLSIKLLIRTTRKVSVTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + L+ + E + P G+L+I +++ G+ L+ L +F+L+YP + Sbjct: 62 GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+L N+ D+ D AIRL + + S+++ ++L + + A+P Y++ EP + Sbjct: 122 ELELVLSNQTFDLVEQDFDLAIRLGR-LSDSTMMAKRLSSRQVRVCASPAYIEKYGEPHT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + EL +HN + I W ++ R+ + NS ++ + G GI Sbjct: 181 LSELSQHNCLVGSLPI--------WRFIENKKEKSVRVKGSVHCNSGAALTNAALKGLGI 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+ V+ D LV I+ P ++ YP + K++ F+ Sbjct: 233 VQLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFL 284 >gi|332160217|ref|YP_004296794.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664447|gb|ADZ41091.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860094|emb|CBX70418.1| hypothetical protein YEW_BJ06650 [Yersinia enterocolitica W22703] Length = 303 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AA + L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG LL +F YPD+ ++++ Sbjct: 68 VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLLEVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D A+R KP Q SSLI R+L + A+P YL L ++LD Sbjct: 128 VSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPRQLD 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243 H +C+ W A + R E ++ L V L + C L G GI L Sbjct: 187 TH----------RCIAHRAWQALILRHEDEFFRWQVPALHVTDNLLYARECALNGGGITL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP ++ ++ N L+ ++ +Y YP N+ L F + + Sbjct: 237 LPAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287 >gi|311108649|ref|YP_003981502.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763338|gb|ADP18787.1| bacterial regulatory helix-turn-helix protein, LysR family protein 175 [Achromobacter xylosoxidans A8] Length = 302 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F + GS AAE L +S + +S+Q+ LE+ +G L R R ++LT+ G+ Sbjct: 4 FNYMRAFRRIVELGSLAKAAENLDMSSAGLSKQLRALESHLGAVLIQRTTRKMSLTDTGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L+ + ++ S SG+LR+ + ++L L FL YPD+++ Sbjct: 64 AYYAECCRLLDELDALEKSVKRESRLVSGRLRVNAPVSFALSVLSPLLARFLRQYPDLRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++++ +D D +IRLR + SSLI R+L ++ AAP YL + P S++ Sbjct: 124 DLAMEDRLVDAVGQGFDVSIRLRAQLDDSSLIARRLASLTQVLCAAPSYLDSRGRPDSVE 183 Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H+++++ P + D D P+ P + +QVN+ L + G GI Sbjct: 184 ALRGHDILSYSLAESPGAVADEETGQQAD-PLAGP--AQVQVNNSLMLRDLLEAGLGIGA 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ + LVR++ + VY YP + K+KAF +F+ Sbjct: 241 LPSFLAAPAIASGRLVRVLPQLPAAPRHVYAVYPTSRHLQPKVKAFVDFL 290 >gi|115360997|ref|YP_778134.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286325|gb|ABI91800.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 304 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AAE LH+S++++++ + LE + ++L R R + +T G Sbjct: 4 FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRKINVTPDGI 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + L +S P G+LR+ + +L L FL YPDIQ+ Sbjct: 64 AYYERVTRLLADMDDAETSLSSASAAPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +DI + DC +R +P S++ R++ + + A+P YL P Sbjct: 124 DMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPSHPA 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G L P M V G ++ N+YL+ V Sbjct: 183 ELENSHHRIVGFSWGRAGKLYPLVMHRHGETVAVQ---GRYALAVDDGNAYLAA---GVA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ K + LV + ED +Y YP + KL+AF +++ Sbjct: 237 GLGIMWLPHYMAKAHLERGELVTLFEDWQLDPMPLYIAYPPNRHVSAKLRAFIDWV 292 >gi|254507200|ref|ZP_05119337.1| transcriptional regulator [Vibrio parahaemolyticus 16] gi|219549910|gb|EED26898.1| transcriptional regulator [Vibrio parahaemolyticus 16] Length = 290 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 151/296 (51%), Gaps = 11/296 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA++L S + +SR++S LE + +KLF R R ++LTE G Sbjct: 3 NWEGVSEFVGVAETQSFTAAAKKLDTSVAQVSRRVSSLEERLAVKLFNRTTRRVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ ++ LE ++ + + P G L++ + G+ L L +FL YP + Sbjct: 63 QLYYQQCKQLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGEQQLAPLLHQFLEKYPQVD 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L N+ +D+ D AIRL + +Q SSL+ ++L + ++ A+ YL EP ++ Sbjct: 123 LDLNLTNQKLDLIEMGVDVAIRLGR-LQDSSLVAKRLSSRQLYVCASKEYLDRFGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H + G + +D ++ R G RI C NS S++ + G G+ Sbjct: 182 SELSNHQCLV-GSVDYWRFKDSKGEKSI-RVSG--RIHC---NSGYSLLDAAIRGLGLVQ 234 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LPDY V+ D +L+ ++ D ++ YP+ + K++ +F+ K +D Sbjct: 235 LPDYYVQSALDTGSLIEVLSDYRDEREGIWALYPQNRNLSPKVRLLIDFLAEKLKD 290 >gi|107027275|ref|YP_624786.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691328|ref|YP_836861.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896649|gb|ABF79813.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116649328|gb|ABK09968.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 305 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA +S +++SR ++ LE +G +LF R +R L+LTE G Sbjct: 6 DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+YH+ E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 RTISEKAGEIYHQAEEAESSAREMSVQPRGLVRLAVPMSYGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D A+R+ + SSL+ R+L + A+P YL+ P Sbjct: 126 IDLHLSDASVDLVADGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +EL +++ + F A + P+ L+V + +++ + G IA Sbjct: 185 RELVDRPCLSYAYRARSAVWRFTNDAGEEEPVMP--TGPLRVTNSDALLPTLLDGLAIAE 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++I + + L I+ D +YF P A K+ A ++ Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYF 292 >gi|318607217|emb|CBY28715.1| transcriptional regulator [Yersinia enterocolitica subsp. palearctica Y11] Length = 303 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AA + L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG LL +F YPD+ ++++ Sbjct: 68 VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLLEVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D A+R KP Q SSLI R+L + A+P YL L ++LD Sbjct: 128 VSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPRQLD 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243 H +C+ W A + R E ++ L V L + C L G GI L Sbjct: 187 TH----------RCIAHRAWQALILRHEDEFFRWQVPALHVTDNLLYARECALNGGGITL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP ++ ++ N L+ ++ +Y YP N+ L F + + Sbjct: 237 LPAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287 >gi|298488354|ref|ZP_07006386.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157176|gb|EFH98264.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S ISRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S ++ +L M+ AAP Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCAAPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|289626011|ref|ZP_06458965.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651472|ref|ZP_06482815.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330868565|gb|EGH03274.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S ISRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S ++ +L M+ AAP Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCAAPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|91224247|ref|ZP_01259510.1| putative transcription regulator protein [Vibrio alginolyticus 12G01] gi|91191158|gb|EAS77424.1| putative transcription regulator protein [Vibrio alginolyticus 12G01] Length = 307 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V GSF+ AA+QL+L++S+IS++I+ LE ++GI+L R R L+LTE G + Sbjct: 7 LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ + + + E P G+L+I + G + + EFL YP I++ L Sbjct: 67 EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++K +D+ D D IR+ + + SS+LI ++L A+P YL+ P +L Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLEEFGTPQKPSDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + + ++ ++ P+ + + VN+ +I Q + GSGIA LP + Sbjct: 186 GHNCLRYSYF--RGGVEWMFINNGSEYKVLPKGNFI-VNNSEAIRQLLLRGSGIAQLPTF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + NL +ME+ P +Y +PE K++AF +FI Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFI 288 >gi|123440948|ref|YP_001004937.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087909|emb|CAL10697.1| putative LysR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 303 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AA + L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG LL +F YPD+ ++++ Sbjct: 68 VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLTRLATDFQRQYPDVLLEVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D A+R KP Q SSLI R+L + A+P YL L ++LD Sbjct: 128 VSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPRQLD 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243 H +C+ W A + R E ++ L V L + C L G GI L Sbjct: 187 TH----------RCIAHRAWQALILRHEDEFFRWQVPALHVTDNLLYARECALNGGGITL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP ++ ++ N L+ ++ +Y YP N+ L F + + Sbjct: 237 LPAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287 >gi|126740855|ref|ZP_01756540.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] gi|126718151|gb|EBA14868.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] Length = 306 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LET +G +L R R ++ TE G Sbjct: 6 EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLETRLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ SSL RKL A+P YL+ P I +L Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSSLRARKLTETTKRMIASPAYLEQFGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 185 NTHKLLHYSNQSSGNV----WRITA--PSGEKRQVRTTGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ + + LV +M + + +Y YP K++AF +F+ Sbjct: 239 YLPSYLYAEALSEGLVEDVMPSLPMETQGIYAVYPPGKFTQPKVRAFIDFL 289 >gi|89052771|ref|YP_508222.1| LysR family transcriptional regulator [Jannaschia sp. CCS1] gi|88862320|gb|ABD53197.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1] Length = 301 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 14/297 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LR++ D G N + L EFL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTAMQSAPSGTLRVSIATDFGVNHVSPILGEFLHAFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ SSL+ RK+ AAP Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAIRVGE-LEDSSLMARKICETQRRMIAAPSYFEEYGRPERIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSNSSAGNV----WKITA--PSGELRQVRTAGWLTVNDGQSLLNAAIGGLGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP ++ + LV M D+ T VY YP K+++F +++ RD Sbjct: 239 YLPSFLYAEPLRQGLLVDAMPDLPTDVQGVYAVYPPGRYIQPKVRSFIDYLVEAFRD 295 >gi|182677612|ref|YP_001831758.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633495|gb|ACB94269.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 301 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 139/289 (48%), Gaps = 8/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR+G T AA L + +++SR+I+GLE + +KLF RH G LT Sbjct: 4 FDWNSLRSFLAVARTGRLTTAARTLGVDHTTLSRRIAGLEEALKVKLFERHPSGYRLTNA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + TTQ ++ + +G +RI G N L + +P + Sbjct: 64 GDRLLLSAETMESIALTTQSQIGGEDLAVTGAVRIGAPEGFGSNFLASRIAALCHQHPQL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L P + L+ RKL + YAAP YL S Sbjct: 124 EIQLVAMPRLFSLSKREADIAISLAPP-REGRLVARKLTDYRLRLYAAPAYLATLPPIKS 182 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I++L I + DLI ++ ++L + + P+ L+ + ++ + + G+GI Sbjct: 183 IEDLRDCRFIGYIDDLIYS--QELDYLGEIASFL-SPQ---LKSANLIAQLNAAITGTGI 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LPD+I + LV ++ ++ + + L+ ++K FI Sbjct: 237 CVLPDFIARGCEGLVPVLPSQVSLMRSFWLVTHADLRGLARIKTVSAFI 285 >gi|37525474|ref|NP_928818.1| hypothetical protein plu1525 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784902|emb|CAE13818.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 302 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 7/250 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L +F V +GSF+ AAE L L+ S++SR I LE ++G+ L R R L+LT Sbjct: 1 MKANSEELTIFVSVVENGSFSRAAEHLQLANSAVSRSIKKLEKKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + E+ ES PSG LRI + +LL +K F YP Sbjct: 61 EEGERYFRRVQHVLQEMAAAETEIMESKHTPSGLLRIDAATPVVLHLLIPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + LI I++ D AIR+ + SSL R L + + A+P YLK P Sbjct: 121 EITLSLISSETYINLIERKVDIAIRVGN-LTDSSLRARPLFSSYRKIVASPEYLKKYGIP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 I+EL H + F + P + W +A D + E + L NS ++ Q CV G+ Sbjct: 180 QCIEELKNHICLGFTE--PVSLN--TWPIACQDGQLHEITVG-LSSNSGETLKQLCVTGN 234 Query: 240 GIALLPDYIV 249 GIA L DY++ Sbjct: 235 GIACLSDYMI 244 >gi|149189272|ref|ZP_01867558.1| AphB/LysR family protein [Vibrio shilonii AK1] gi|148836831|gb|EDL53782.1| AphB/LysR family protein [Vibrio shilonii AK1] Length = 291 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 144/289 (49%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE + ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L +T ++ + SGKL+I++ +L + ++ +F+ YPDI ++ Sbjct: 64 FYNECSPLLQRLTSTTEDIADECKGASGKLKISSPSNLTKRMMMPMFNDFMSKYPDISLE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + N + D R+ P + SSLI RK+ T+ A P YL EP +E Sbjct: 124 LTMSNHADQLDPTEWDVIFRV-GPQRDSSLIARKISTVKDILVAHPDYLSLNGEPKHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ LI +++ + + ++ G + NS + + C G GI L+P Sbjct: 183 LSTHRLLKGAPLIKWQLKNTSGESIINNTKGR-----FEANSLNVVRRACSAGLGITLMP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K+ N LVR++ + +Y Y K++ F +F+ Sbjct: 238 DVMLKEYINNGELVRVLPEWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|90409019|ref|ZP_01217148.1| transcriptional regulator, LysR family protein [Psychromonas sp. CNPT3] gi|90309877|gb|EAS38033.1| transcriptional regulator, LysR family protein [Psychromonas sp. CNPT3] Length = 288 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 147/289 (50%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F V+ + SFT AA ++ +S + +SRQ+S LE + IKLFYR R ++LT++G Sbjct: 3 WEGINEFVYVSETESFTKAARRMSISTAQVSRQVSALENRLNIKLFYRTTRKISLTQEGH 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + LE + + +P G +++ + G+ + + +F+LLYPDI++ Sbjct: 63 IFYQHCRLLLNGLEDAKRAISNLQDRPRGMIKLTAPVSYGEQQILPLVNDFMLLYPDIEV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ +D+ D D AIR+ K + S+++ +KL + A+P YL+ PLS+ Sbjct: 123 FAYLGNQQVDLVGDGYDLAIRIGK-LSDSTMMAKKLSVRSNYVCASPFYLEKYGTPLSLL 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L++HN + ++ N + R G L+ NS + + GI L Sbjct: 182 DLNQHNCLM--GVLDHWHFKENGIEKKIRVKGN-----LRYNSGWGLADAALKSQGIVQL 234 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD V+ D+ L+ I+E P +++ YP K++ +F+ Sbjct: 235 PDCYVQKHLDSGTLMSILEHCQEPDESIWAVYPHNRHLCSKIRLLVDFL 283 >gi|114320559|ref|YP_742242.1| LysR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226953|gb|ABI56752.1| transcriptional regulator, LysR family [Alkalilimnicola ehrlichii MLHE-1] Length = 305 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 143/298 (47%), Gaps = 19/298 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF A+E+L + S+ SRQ+S LE + +LF R R LTLTEQG + Sbjct: 7 MEAFVAVVEAGSFVAASERLGRATSTTSRQVSELEAHLQARLFQRTTRRLTLTEQGQVFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++ +LE + E+ + +P+G LR+ + G L G + +F +P + + L Sbjct: 67 RHCKDLLARLEEAEAEVGAGTGEPNGVLRVTAPVSFGTLHLAGLIPQFHARHPRVHLNLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ + D A+R+ + + L+ RKL ++ + AAP YL P + L Sbjct: 127 LDDRQVDLMGEGHDLALRISRSL-PEHLVARKLASVSIITCAAPGYLAQAGRPERPEALQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGI 241 H + + P W T P G + +V YL+ VL G GI Sbjct: 186 AHTCLLYSQAEPY----RTW--TYQGPQGPIPV---RVGGYLTANNGDVLRAAALAGDGI 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKARD 296 A LP ++V+D+ + R++ + VY YP K++AF +F+ RD Sbjct: 237 AQLPAFLVRDDLSAGRLVPLLPDYPLPPLGVYAVYPSRRYLPAKVRAFVDFLAETWRD 294 >gi|256822463|ref|YP_003146426.1| LysR family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796002|gb|ACV26658.1| transcriptional regulator, LysR family [Kangiella koreensis DSM 16069] Length = 302 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 148/291 (50%), Gaps = 12/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F V + GSFT AAEQL S +S+ +S LE+++ ++L +R R +T+TE G Sbjct: 5 DLMQAFISVVQQGSFTSAAEQLGTSTQLVSKYVSQLESDLKVRLLHRTTRSVTVTEAGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +ET + ++E +P G+LRI+ + L L E+ YP++ I Sbjct: 65 YLERAQQILSDIETLEGSIKEEGDEPRGRLRISAPMSFSTLHLGKLLAEYQQQYPEVTID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +DI + D AIR+ ++SSSLI RK+ I + A+P YL EP S++E Sbjct: 125 LQLNDRKVDIVEEGFDLAIRIGD-LESSSLIARKIAPIQLVMCASPDYLHQHGEPQSLEE 183 Query: 186 LDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H + + + +P + + ++R G + N+ + + V G+GI Sbjct: 184 LKGHRYLHYSYRNEDLPALVSTQSASMVLNRQKG-----SIAANNGEVLAKAAVAGAGIV 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P +IV L I++ +Y YP +GK+++F +++ Sbjct: 239 LQPTFIVGPYIAQGKLKPILKQHQQEPLGLYAVYPHRKYLSGKVQSFIDYL 289 >gi|148975168|ref|ZP_01812092.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3] gi|145965092|gb|EDK30342.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3] Length = 289 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 148/297 (49%), Gaps = 25/297 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA SFT AA++L S + ISR+++ LE + +KL R R ++LTE G Sbjct: 3 NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLLNRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + P G L++ + G+ L L +FL L+P ++ Sbjct: 63 QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+L N+ +D+ D AIRL + ++ SSL+ +KL ++ A+P Y++N EP ++ Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIENYGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCV 236 EL H + G E + + + G P RI C NS L+++ Sbjct: 182 SELTNHQCLVGG------FEHWRF-----KENGRPRSVRVNGRIKC---NSGLALLDAAK 227 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LP+Y V D+ LV ++ D ++ YP+ + K++ +F+ Sbjct: 228 QSIGLVQLPEYYVSEDLDSGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFL 284 >gi|77460131|ref|YP_349638.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384134|gb|ABA75647.1| LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 302 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 147/289 (50%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V GSF+ A +LH +Q +IS+ + LE E+G KL R R L+LT++G + Sbjct: 5 NAMAIFVRVVERGSFSAVARELHTTQPTISKVLRALENELGGKLIARSTRKLSLTDEGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + Q +G LRI +++ G+ + L EFL +P +Q+ Sbjct: 65 YYNECRNILAAVDAAEHSFQSGRETVAGPLRIGSSVSFGRLHIASRLAEFLQRFPQVQVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D ++R+ + + S +I R++ T H A P YL+ P S Q+ Sbjct: 125 LQLSDQNLDLVSEGLDVSLRIGE-LNDSGMIARRIGTTHRLTVATPDYLRRHGHPQSPQD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +HN + F L + + W D + RI Q N+ +I + + G G++L Sbjct: 184 LAQHNCLQFNLLSTQNL----WTYEKDGQHHDVRIQGNAQSNNSEAIREMVLGGLGVSLS 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ ++ ++ +++D T S ++ P + + ++ AF +F+ Sbjct: 240 PVWLFSEDLKAGRVIALLQDYQTRSLPIHAVSPANRRQSARVNAFVDFM 288 >gi|197337542|ref|YP_002158766.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197314794|gb|ACH64243.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 300 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 8/296 (2%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+F+ +D + +F V SGSFT AA S S IS++I LE +G++L +R R L Sbjct: 1 MAFNSALFDGMVIFSEVVTSGSFTQAALNSGHSTSYISKEIGKLEERLGVRLLHRTTRTL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT +G + ++ + + + KP G+L+++ + + L+ L +F Sbjct: 61 RLTPEGELYFQQCQQLIEDAQMAENSITGQQEKPKGRLKVSCPVGFALSRLRPILGKFTD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYPDI ++L L+++ IDI + D AIR ++ SSLI R+ + A+P YLK Sbjct: 121 LYPDITLELDLNDRKIDIVAEGFDMAIRASHQLEDSSLISRRFLRSRAITIASPDYLKKH 180 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 PL EL H I + + + DF +P+ S + N+ + C+ Sbjct: 181 GAPLHPNELPSHKTIGYAYVKQGAVWDFT--DKNSQPLAIQLNSQVITNNSFMELSLCLA 238 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI +P + + D LV + D + ++ YP + K++ F +FI Sbjct: 239 GQGITRIPHFHLTDELETGKLVELFADYPKLTIDIFMVYPSRKHMSAKVRCFMDFI 294 >gi|254227935|ref|ZP_04921365.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|262396082|ref|YP_003287935.1| transcriptional regulator [Vibrio sp. Ex25] gi|151939431|gb|EDN58259.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|262339676|gb|ACY53470.1| transcriptional regulator [Vibrio sp. Ex25] Length = 307 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V GSF+ AA+QL+L++S+IS++I+ LE ++GI+L R R L+LTE G + Sbjct: 7 LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ + + + E P G+L+I + G + + EFL YP I++ L Sbjct: 67 EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++K +D+ D D IR+ + + SS+LI ++L A+P YL P +L Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + + ++ ++ P+ + + VN+ +I Q + GSGIA LP + Sbjct: 186 SHNCLRYSYF--RGGVEWMFINNGSEYKVLPKGNFI-VNNSEAIRQLLLRGSGIAQLPTF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + NL +ME+ P +Y +PE K++AF +FI Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFI 288 >gi|269962869|ref|ZP_06177209.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832423|gb|EEZ86542.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 295 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 156/290 (53%), Gaps = 9/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L+VF VA+ GSFT AA +L+ +QS++S++I+ LE+EVGI LF+RHAR ++LT G Sbjct: 4 FDCLKVFSRVAQLGSFTSAANELNTTQSAVSKKIAWLESEVGITLFHRHARAISLTSGGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++++ + +L++ SG+L+++ LL L EFL +P++ + Sbjct: 64 QYLELAQTLTEQMDSFESQLRQEQASVSGELKLSVPSAFSVRLLSAPLNEFLNQHPELSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + +K +D+ D AIR ++ S L R L+ + +A+P YL + + Sbjct: 124 DVSVSDKFVDLVEGNVDIAIRAAY-LKDSGLKARWLMDNELVYFASPSYLDKNKPIHTAN 182 Query: 185 ELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L KH +T+ P + F + T+ + E ++ +S ++Q LG GIA Sbjct: 183 DLSKHLCLTYSLSNPSNLWRFSDGNETIKVKVKEQ----VRSDSPEMLVQMAKLGQGIAA 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P ++V+ N L++++ + +Y Y ++ +++ F +F+ Sbjct: 239 MPKWMVEQELINGELIQVLTQYQSVKLPMYLVYKDSEYQPQRIRTFIDFL 288 >gi|212709333|ref|ZP_03317461.1| hypothetical protein PROVALCAL_00368 [Providencia alcalifaciens DSM 30120] gi|212688245|gb|EEB47773.1| hypothetical protein PROVALCAL_00368 [Providencia alcalifaciens DSM 30120] Length = 338 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 8/253 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L +F V +G+F+ AAE+LHL++S++S+ IS LE +GI LF R R TLT Sbjct: 39 LDLNCLPIFIAVVEAGNFSAAAERLHLTRSAVSKSISRLEGSLGIALFQRTTRQQTLTND 98 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + + L+ L+ GK+ I LG + L E + LYP + Sbjct: 99 GMVLYEYAGKALNALQEASNYLESGKRNVEGKVCITAPRLLGNLYVVPLLVELMKLYPKL 158 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+ +L+++++D+ + A+R+ K S+ LI ++ M A+P YL P Sbjct: 159 EIETVLNDRNVDLQQEGVHVAVRVGKLADSNQLIAHEIGYHKMIFCASPSYLAEHGIPQQ 218 Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ELDKH LI + G ++P + D N A P IS L ++ +IM + G+ Sbjct: 219 LSELDKHQLIAYTQAGKILPWHVFDQNQQAHRYLP-----ISKLVMDDMQTIMFAALNGA 273 Query: 240 GIALLPDYIVKDN 252 GIA LP ++VK+N Sbjct: 274 GIAYLPQWLVKEN 286 >gi|153010253|ref|YP_001371467.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562141|gb|ABS15638.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 301 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 16/252 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++VF V +GSF+ AA L ++ S+IS+ IS +E +G++L R +R L+LT +G Sbjct: 7 EMQVFLRVVETGSFSEAARLLRMNPSTISKLISRIEARLGVRLLERSSRRLSLTTEGQIY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + E + EL + S G +R+ ++ LG L+ L EFL YP+I I L Sbjct: 67 YERSQGLLRDFEEVERELSQGSASTGGTVRVNASVALGTLALEPLLPEFLSAYPNIVIDL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ +D D A R+ + +SS++ RKL T AAP YL+ C PL+I +L Sbjct: 127 SLSDELVDLYLDRTDVAFRI-GTLPNSSMMARKLGTARRKIVAAPAYLERCGMPLTIDDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 HN I F +F A V R + L N+ ++ + V G G Sbjct: 186 IDHNCIGF---------NFRRAAPVWPLKESGRIVDRAVYGSLLANNGETVRRMAVAGLG 236 Query: 241 IALLPDYIVKDN 252 +A + DY +++ Sbjct: 237 LARIGDYHARND 248 >gi|300692442|ref|YP_003753437.1| transcriptional regulator, lysR family [Ralstonia solanacearum PSI07] gi|299079502|emb|CBJ52180.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 305 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 21/286 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L +F V +GSFT AA +L L +SS+SR I+ LE E+ ++L R R L LT+ Sbjct: 1 MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQELNVRLLQRTTRTLHLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++V S +E E P GK+R+ D+G+ L+ + F+ YPDI Sbjct: 61 GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L +++D+ + D A+R+ + + SSL+ R L + + +A+P YL+ P + Sbjct: 121 DLDVVLTARNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGVPQA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 +++L H+ + F + W R +G + + V + L+ L Sbjct: 180 VRDLGHHSCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231 Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 G+GI LP Y + + N P LVR++ D T ++ P A Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPDYATSGEPLHLVTPTA 277 >gi|156935278|ref|YP_001439194.1| hypothetical protein ESA_03131 [Cronobacter sakazakii ATCC BAA-894] gi|156533532|gb|ABU78358.1| hypothetical protein ESA_03131 [Cronobacter sakazakii ATCC BAA-894] Length = 295 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 15/254 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L +F V SGSF+ AAEQL+L+ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKASSDELIIFVAVVESGSFSRAAEQLNLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R +V ++ + EL ES P G LRI + +LL +K F YP Sbjct: 61 EEGERYFRRVQQVLQEMAAAETELMESRQTPRGLLRIDAATPVILHLLIPMIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + AAP YL+ P Sbjct: 121 EVALSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVAAPDYLERYGVP 179 Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 +I EL+ H + F + + P ED L + NS ++ Q C Sbjct: 180 KNICELNDHVCLGFTEPVSLNTWPVACEDGQLLEIT---------PGMTSNSGETLKQLC 230 Query: 236 VLGSGIALLPDYIV 249 + G+GIA L D+++ Sbjct: 231 LTGNGIACLSDFMI 244 >gi|269965595|ref|ZP_06179708.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829663|gb|EEZ83899.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|328470054|gb|EGF40965.1| transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 307 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V GSF+ AA+QL+L++S+IS++I+ LE ++GI+L R R L+LTE G + Sbjct: 7 LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ + + + E P G+L+I + G + + EFL YP I++ L Sbjct: 67 EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++K +D+ D D IR+ + + SS+LI ++L A+P YL P +L Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + + ++ ++ P+ + + VN+ +I Q + GSGIA LP + Sbjct: 186 SHNCLRYSYF--RGGVEWMFINNGSEYKVLPKGNFI-VNNSEAIRQLLLRGSGIAQLPTF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + NL +ME+ P +Y +PE K++AF +FI Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFI 288 >gi|253995840|ref|YP_003047904.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253982519|gb|ACT47377.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8] Length = 296 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 151/288 (52%), Gaps = 10/288 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+++ VF V ++GSF+ AA Q+ L S++S +IS LE +GI L R R L+LTE Sbjct: 1 MDFNESAVFVKVVQAGSFSEAARQIGLPTSTVSTRISRLEKRLGITLLQRTTRRLSLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ ++ ++ L + + E+ +P GKL++ DLG +LL ++ +P++ Sbjct: 61 GAVYYQHAAQGLSYLLEAEAAIDEARQQPQGKLKVTAPADLGDSLLANLIQRAQRDFPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+L ++ ID+ D D AIR ++ SSLI + L IH +A+ YLK+ PL Sbjct: 121 EMELLLTDRYIDLVADGVDVAIRTGD-LRDSSLIAKSLGIIHWELFASKDYLKSA-APLE 178 Query: 183 I-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + Q++ H+ + F + N + + P+ ++ NS + G GI Sbjct: 179 VPQDIHAHHCLQFTPMGRDAWTLSNEYSHITIPLPARTMA----NSIGVVKSMAENGQGI 234 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ALLP ++ K + +L+R++ D + V+ YP+ KL+AF Sbjct: 235 ALLPAFVCKQGLISGDLLRVLPDWQGRADPVHLVYPKQRFMPPKLRAF 282 >gi|187927525|ref|YP_001898012.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|309779771|ref|ZP_07674527.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA] gi|187724415|gb|ACD25580.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gi|308921470|gb|EFP67111.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA] Length = 305 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 141/289 (48%), Gaps = 27/289 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L +F V +GSFT AA +L L +SS+SR I+ LE ++ ++L R R L LT+ Sbjct: 1 MDLNQLALFVRVVEAGSFTAAATRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++V S +E E P GK+RI ++ D+G+ L+ F+ LYP+I Sbjct: 61 GQSLYQVASHALEDIERATTCAGELQDLPRGKVRITSSEDVGRLLVAPVAARFMQLYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L +++D+ + D A+R+ + + SSL+ R L + + +A+P YL+ P + Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARSLGVLRIGLFASPDYLQRRGAPDT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVL-- 237 +Q L H C DF + R +G + + V + L+ L Sbjct: 180 VQGLADH-----------CCLDFRGTGRGETQWRLVGPDGLKTVAVRARLNADSLIYLET 228 Query: 238 ----GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 G+GI LP Y + + N P LVR++ D T + P A Sbjct: 229 LIASGAGIGPLPLYASAVARANAPLPRLVRVLPDYATSGEPINLVTPSA 277 >gi|110832979|ref|YP_691838.1| LysR family transcriptional regulator [Alcanivorax borkumensis SK2] gi|110646090|emb|CAL15566.1| transcriptional regulator, LysR family [Alcanivorax borkumensis SK2] Length = 290 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 23/298 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD++ F V R GSF AA L +S S +SR ++ LET++G +L YR R LTLT+ G+ Sbjct: 4 WDRIEAFVEVVRGGSFARAARHLGVSSSHVSRLVARLETQLGTQLLYRTTRRLTLTDAGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +++ + + + +P+G LR+ G+ + + +FL +P + + Sbjct: 64 VYFEHCCQLFDGFQEALNAISDFQQQPTGVLRLTCATTFGERFIAPLVNDFLARHPQLSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL N+ +DI + D AIR + SSLI RKL + +P Y P ++ Sbjct: 124 QLDFTNRRVDIVDEGFDVAIRT-GALPDSSLIARKLCPRREYVVGSPGYFSRHARPHTLG 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 EL HN C++ + W VD G+ R S +Q NS +++ G Sbjct: 183 ELSGHN----------CLQGSSEQWTFDVD---GQHRHSKVQGNWKGNSGAALLDAARKG 229 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+A LPDY V ++ LV +++ V+ YP + K++ +F+ K Sbjct: 230 IGLAQLPDYYVGEDLARGQLVSVLDQYACTHTAVWVVYPRHRHLSPKVRQCVDFLVEK 287 >gi|332529642|ref|ZP_08405597.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040873|gb|EGI77244.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 304 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 18/289 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AAE L L + ++++ + LE + +KL R R +T+T G+ + Sbjct: 7 IRVFARVVEAGTFTKAAESLDLPKGTVTKLVQQLEARLKVKLLNRTTRRVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ V L+ + + + KPSG+LR+ + +L L +F +PDIQ+ L Sbjct: 67 ERTTRVLKDLDDIEASMTNAQAKPSGRLRVDVGTSVAGQILIPALADFYRRFPDIQLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR +Q SL+ R+L + + A A+P Y+K P EL+ Sbjct: 127 VTDRPVDLITDNVDCVIR-GGDLQEQSLVARRLGNVPLVAVASPAYIKARGLPRHPSELE 185 Query: 188 K-HNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + H + F + + M+D L L VN ++ + G G Sbjct: 186 REHTTVNFFSARTGRPYMHEYMQDGKTLEVAGH-------YQLSVNESNALTSAVLAGLG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ +P + + + LVR++ED P +Y YP + K++AF Sbjct: 239 VSHIPTFTAEPLIASGQLVRVLEDWTCPVIPLYVVYPPNRHLSAKVRAF 287 >gi|254227510|ref|ZP_04920942.1| transcriptional regulator [Vibrio sp. Ex25] gi|262396224|ref|YP_003288077.1| transcriptional regulator [Vibrio sp. Ex25] gi|151940122|gb|EDN58948.1| transcriptional regulator [Vibrio sp. Ex25] gi|262339818|gb|ACY53612.1| transcriptional regulator [Vibrio sp. Ex25] Length = 289 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + ISR++S LE + +KL +R R ++L+E G Sbjct: 3 NWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + +P G LR+ + G+ L L +FL YP + Sbjct: 63 QLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+L N+ +D+ D AIRL + +Q SS+I ++L + + A+P YL+ EP ++ Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQNYVCASPMYLERFGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL H + G + D+ W ++ R+S ++ NS +++ G G+ Sbjct: 182 SELGWHQCLV-GSV------DY-WHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ D+ LV ++ D ++ YP++ + K++ +F+ Sbjct: 234 QLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFL 284 >gi|50122824|ref|YP_051991.1| LysR family transcriptional activator [Pectobacterium atrosepticum SCRI1043] gi|49613350|emb|CAG76801.1| LysR-family transcriptional activator [Pectobacterium atrosepticum SCRI1043] Length = 301 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L++SS+S +IS LE ++G++L R R L LT G + Sbjct: 8 MALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI + LG LL EF +P + + ++ Sbjct: 68 IHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFHQRFPAVSLDVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + ID+ + D A R KP SSLI R L + A+P YL L Q+L Sbjct: 128 ISDAVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHSALLHPQQLQ 186 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I L+ + E + WL + + I+ ++ L + + G+GI L Sbjct: 187 QHRCIAHHAWTEWLLHRGSELYRWL------LPDAHIT----DNLLYARECAIAGAGITL 236 Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LPD++ +D LVR++ D + +Y YP N+ L F +F+ Sbjct: 237 LPDFLCRDEAVSGKLVRVLPDWQAEANELYLVYPSRKLNSPALACFIDFVL 287 >gi|262199468|ref|YP_003270677.1| LysR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082815|gb|ACY18784.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM 14365] Length = 317 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 6/290 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + G+FT AA +L LS S SR ++ LE E+G+ LF R+ R + TE G + Sbjct: 8 IEIFCLAYELGTFTAAARELGLSPQSASRALARLEGELGVVLFRRNTRHIQATEAGRTYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V L+ ++EL + +PSG +R++ G + L EF +P + + + Sbjct: 68 ETCRSVLKALDAVEMELPGGADEPSGDVRVSVPTTYGHHRFLPLLAEFRRRHPRVFVDVQ 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +DN+ ID D D AIR+ K + + I RKL + +A+P YL+ EP S+ ++D Sbjct: 128 VDNRTIDFVRDRFDVAIRMGK-LHDAPFIARKLGDFSLGLFASPAYLRARGEPRSLDDID 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + F ++P+ + W + PR + + L ++ G GI + DY Sbjct: 187 NHECVLF--VMPRTGKILPWSLAGEPRSYTPRAAIRVRHDVLGLISIARAGGGIIQIYDY 244 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 +V++ LV I+ D S YP ++A F+ A Sbjct: 245 LVENELARGELVEILPDYRGRSRPFSLIYPPEAMRRPPVRALVEFVVHSA 294 >gi|182678261|ref|YP_001832407.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634144|gb|ACB94918.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 299 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 10/285 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA +GS + AA +L LS+S +S ++S LE +G LF+R R L+LTE G+ Sbjct: 4 DGIMTFVAVAEAGSISEAARRLSLSKSVVSERLSDLERSLGTVLFHRTTRKLSLTEDGAA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E +L E SG LR++ + G+ L L FL +P I + Sbjct: 64 FFERAARITRDVEEAAADLAERRGTLSGPLRLSAPVTFGRMHLGPALYPFLAQHPRIAMT 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD++ +D S + D +R + ++ S L+ L + H A+P YL P S+ E Sbjct: 124 LELDDRRVDASAEGYDAVVRHGR-LEDSRLMAWCLASSRRHLVASPSYLIRHGTPKSLAE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L++H I + + + D+ ++ I I L+VN+ + V G GIALLP Sbjct: 183 LEQHRGIFYTN---RGAADWRFMGPEHATIVRGTIG-LRVNNGDMMRDAAVAGLGIALLP 238 Query: 246 DYIVKDNPNLVRI-MEDV---ITPSFTVYFCYPEALKNTGKLKAF 286 +IV + + DV + P F VY +PE + + KL+A Sbjct: 239 SFIVGAEVRTAALTVIDVGAEVEPEF-VYIAHPEGRRPSAKLRAL 282 >gi|116249208|ref|YP_765049.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253858|emb|CAK12253.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 138/290 (47%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + V V SGSF AAE + LS S +SR IS LE +G++L R R + LT+ G++ Sbjct: 8 NGVSVLAAVIESGSFARAAELMGLSASGVSRAISRLEGRIGLRLLDRTTRTMRLTDDGAR 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +E + G+LR+ + +L L FL YPDIQI+ Sbjct: 68 FYQQVAPLLSGIEEAAQTAVGARQAVRGRLRVNVDPYFSRLVLGPRLGAFLDRYPDIQIE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I N+ D+ D D A+R +P Q SLI R L+ + AAP Y++ P Q+ Sbjct: 128 VITRNEIGDLVADGMDVAVRFGEPAQ-RSLISRLLMQTRVITIAAPVYIERHGRPGRPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243 L +H I F D P F W L + + S + VN + + C+ G GIA Sbjct: 187 LSEHTCIQFQD--PLTARPFEWELRRREEVVSIETRSRILVNDAGTTLATCLAGIGIAQV 244 Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + DY+ +N LV + D +F +Y YP K++AF +F Sbjct: 245 FSLGMADYL--NNGQLVNLFPDWSDETFPLYAFYPSRQHVPAKVRAFIDF 292 >gi|325277045|ref|ZP_08142705.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097828|gb|EGB96014.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 273 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 15/280 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS W+ + F VA SG FT AAE+L +S S ISRQI+ LE + +L YR R +TL+ Sbjct: 1 MSNRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + E + + + +P G LR+ + G+ + + F+ LYP Sbjct: 61 EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + L+N +D+ + D AIRL + + S L+ +L M+ A+P YL+ P Sbjct: 121 QLRVDVELNNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179 Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238 S+ EL +HN LI D W D R I + + NS +++ + G Sbjct: 180 HSLSELARHNCLIGSSD---------AWALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G+ LPDY V + + LV ++E P+ V+ YP+ Sbjct: 231 MGLCQLPDYYVLEHLHSGALVSLLEGHQPPNTAVWALYPQ 270 >gi|108762266|ref|YP_632529.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108466146|gb|ABF91331.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622] Length = 293 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 147/288 (51%), Gaps = 11/288 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L VF V ++GSFT AA L + +S++SR++S LET VG +L R R L LT+ Sbjct: 1 MDLNELLVFARVVQAGSFTAAARGLRMPKSTVSRKVSELETRVGAQLLQRTTRKLRLTDV 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + E ++ + P G LR+ T + + + + F+ YP++ Sbjct: 61 GRTYYEHCARIVAEAEQAELAVTRMQAAPHGLLRVTTPLTF--SFIGPLVSTFIKQYPEV 118 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q++++ ++++D+ + D AIR + + SSL+ R+L + AAP YLK P + Sbjct: 119 QLEMVCTDRNVDLVAEGFDLAIRAGR-LADSSLMARRLGIVERVVIAAPSYLKARGTPKA 177 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L+KH+ + FG +E+ W L + +R + + + VN + GSGI Sbjct: 178 PKDLEKHDCLLFG----AGLENNVWTLHSGNRSVDIKVPARIVVNEPDMLYAVARAGSGI 233 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ALLP+ L RI+ D + V+ YP ++ K+ AF Sbjct: 234 ALLPNLHFTSELAAGRLQRILPDWSSTGAPVHAVYPSTRHHSPKVMAF 281 >gi|224823963|ref|ZP_03697071.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224603382|gb|EEG09557.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 313 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 136/273 (49%), Gaps = 11/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 +RVF V +GSF AAE++ LS++ +++ ++ LE ++G++L +R R L+LTE G+ L Sbjct: 7 MRVFQTVTEAGSFAGAAERMDLSRAMVTKYVAALEQQLGVRLLHRSTRRLSLTEVGADYL 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 RV S + E + ++S P+G LRI ++ GQ L L EF YP+I + L Sbjct: 67 QRVASILAQVDEAAAVASRQSQT-PAGTLRITASVAFGQRRLGTLLTEFHRRYPEISVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQE 185 +L N+ ID+ + D A+R +LI R L+ I+ AAP YL+ P + + Sbjct: 126 MLTNRHIDLVEEGYDLALRTSLHASEENLIARLLLGPIYSTLLAAPSYLEKHGTPQTPAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L HN + + + +E W P+ L N ++ G GIAL Sbjct: 186 LVHHNCLRYS----RPLESNTWSFGPPQSPVTVRVSGSLSTNDGAVLIDAARAGLGIALQ 241 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 P +V ++ LV ++ D PS +Y YP Sbjct: 242 PSVLVSEDLASGRLVELLPDWEKPSTALYALYP 274 >gi|70728581|ref|YP_258330.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68342880|gb|AAY90486.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 299 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 15/291 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA FT AAE+L +S S ISRQ++ LE + +L YR R +TLTE G Sbjct: 6 WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRRVTLTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMSLYPQLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S L+ +L M+ A+P YL+ P S+ Sbjct: 126 DIELSNRPLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLS 184 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL +HN LI D+ W +D R + + NS +++ + G G+ Sbjct: 185 ELSRHNCLIGSSDI---------WQLELDGREFSQRVQGNWRCNSGQAVLDAALQGVGLC 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V + N L+ ++E P+ V+ YP+ + K++ +++ Sbjct: 236 QLPDYYVLEHLQNGTLISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|218529313|ref|YP_002420129.1| LysR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218521616|gb|ACK82201.1| transcriptional regulator, LysR family [Methylobacterium chloromethanicum CM4] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 9/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ L F +AR G AA +L + +++SR+I+ LE + KLF R + G LTE Sbjct: 2 FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G KL + + K+ + EL S +P+G++R+A+ + L EF P Sbjct: 62 GHKLFVIAEAIEQKMLSVPDELGLSDGAEPAGRVRVASMEGIAAFYLSAKFAEFAAAMPG 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I+L+ + I+++ AD ++ P Q L R++ + +AA YL P Sbjct: 122 IVIELVTERHLINLTKREADISVSFVPP-QGPRLKVRRVGEFRLALFAAERYLAAHGRPT 180 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L H+ + + DL+ +E +WL V +P + S + G+G Sbjct: 181 TRADLQGHDFVDYVDDLV--AIEPVHWLLEVLKPTN----VVFRSTSMAAQQTAVAAGAG 234 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LLP + K NP L+ ++ D + +Y E +++ G+++A F+ Sbjct: 235 LGLLPLFSAKTNPALIPVLADDVVVQRELYLGVHEDIEHAGRIRAVTRFL 284 >gi|59711484|ref|YP_204260.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|197335343|ref|YP_002155639.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|59479585|gb|AAW85372.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] gi|197316833|gb|ACH66280.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 301 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 146/290 (50%), Gaps = 12/290 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + + V SGSFT AA L +++S++SR+++ LE +G+KL R R L LT++ Sbjct: 2 MDLNNITLLNQVVDSGSFTQAATNLGMTKSTVSRKLAELEEHLGVKLITRSTRKLGLTQE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + +V ++ T++EL + G L +A +++G N++ + FL YP++ Sbjct: 62 GEIFYQASVKVLDIMQQTELELTANQNLIRGHLNLAMPVEIGHNVMSDYINSFLKHYPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CRE 179 I L + N+++DI D D +++ + I SSL+ R + A+P YL N + Sbjct: 122 SINLEMTNREVDIIGDNIDLYVQIGE-INDSSLVARTIDFSERIIVASPEYLNNYGYIQT 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P +Q + +P + VD+ I L+VN+ + C+ G Sbjct: 181 PEDLQAPHHQIRVVNAVKVPNL-----YFNQVDKAIRVNLPYRLKVNTVTACKSACLSGL 235 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIA LP++I ++ N L+RI+ D P + +P+ +L+AF Sbjct: 236 GIASLPEFICREHINNGELIRILPDWDLPRVAISLVFPQNKLLPKRLRAF 285 >gi|34496175|ref|NP_900390.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34102029|gb|AAQ58396.1| probable transcriptional regulator LysR family [Chromobacterium violaceum ATCC 12472] Length = 288 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 8/274 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F +AR+G+ AA+QL + Q+++ R++ E E+G +LF R +G L+E Sbjct: 1 MNWDNARYFLSLARAGTLRAAAQQLGVDQATVGRRLQAFEAEIGSRLFLRTPQGYQLSES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L + + + S + +G +RIA T + + + L E +P++ Sbjct: 61 GAMLLADAERMEAAADAFSRKAAHSDRQLAGPVRIAATDTVAEAFIIPALAELSRRHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+ D++ D AIR +P + L+ RKL I M YA+P YL PL Sbjct: 121 EFTLLTGLSIRDVAAGEVDFAIRSLRPDKGEVLV-RKLAAIDMSLYASPDYLARRGRPLP 179 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H L+ F D +P+ +W + + RI+ LQ NS LS+ Q + G GI Sbjct: 180 GDGFAGHELLMFPRDTVPR-----HWQRLCGESVDQARIA-LQANSQLSLRQAALAGMGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPE 275 A+L +I + L R+ D P +P+ Sbjct: 234 AMLSCFIADRDAGLERVWPDRTDPVDMWLVLHPD 267 >gi|90414572|ref|ZP_01222546.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90324379|gb|EAS40945.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 306 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 150/296 (50%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FD + L +F V SFT AA +L +++S+ISR+I+ LE +G +L R R L LT Sbjct: 8 IGFDLNTLEMFARVVECHSFTQAAAELEITKSTISRKIAELEKHLGARLLTRSTRTLVLT 67 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G ++ + + +E T++E+ S G L I +++G LL +KEF+ L+P Sbjct: 68 KEGETFYQSCTHIIELIEQTELEVMASHDLIRGPLNIVMPVEVGNGLLGRCMKEFMKLHP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I L L N+ +D+ + D +++ + + SSLI R A+P YL P Sbjct: 128 QVTIHLELSNRKVDLIAEGIDLKVQVGE-LDESSLIARTFHYSTRILVASPEYLAEYGTP 186 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L + + +++ + + T D+ + VN+ S ++ C+ G G Sbjct: 187 QLLSDLKAPH---------QQIKNSSSVRTADKNVLAGLPYRFNVNTINSSLEACLDGFG 237 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I +P++I K++ LV ++ DV + + F YPE + +L+ F +F ++ Sbjct: 238 ITFMPEFICKEHIVTGRLVHVLPDVYSAQIPISFVYPERKLISKRLREFIDFSIMR 293 >gi|83944242|ref|ZP_00956697.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. EE-36] gi|83953283|ref|ZP_00962005.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. NAS-14.1] gi|83842251|gb|EAP81419.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. NAS-14.1] gi|83844786|gb|EAP82668.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. EE-36] Length = 301 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 139/291 (47%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSEFLADFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPAYFEKYGRPEKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + M W T P GE R L VN S++ + G GIA Sbjct: 185 NDHKLLHYSNQSSGNM----WKLT--SPSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D LV + D+ + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYADAMEKGLVEDAIPDLPLETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|300705096|ref|YP_003746699.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299072760|emb|CBJ44113.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 305 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 142/286 (49%), Gaps = 21/286 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L +F V +GSFT AA +L L +SS+SR I+ LE ++ ++L R R L LT+ Sbjct: 1 MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++V S +E E P GK+R+ D+G+ L+ + F+ YPDI Sbjct: 61 GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L +++D+ + D A+R+ + + SSL+ R L + + +A+P YL+ P + Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGAPQA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 +++L H+ + F + W R +G + + V + L+ L Sbjct: 180 VRDLGHHSCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231 Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 G+GI LP Y + + N P LVR++ D T ++ P A Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPDYATSGEPLHLVTPTA 277 >gi|330830944|ref|YP_004393896.1| LysR family transcriptional activator [Aeromonas veronii B565] gi|328806080|gb|AEB51279.1| LysR-family transcriptional activator [Aeromonas veronii B565] Length = 290 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 14/292 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D + + +F V GSFT AAE L + +SS+S++IS LE+++G++L R R L+LT Sbjct: 3 NVDLELMGLFATVVEQGSFTRAAELLGMPKSSVSQKISRLESQLGVRLLQRTTRRLSLTP 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG + + + + P+G++RI G LL L EF LYP+ Sbjct: 63 QGELYVEHCQGLLALARSANLAMARLRSAPAGRVRITAPEATGTLLLGRILAEFRALYPE 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D+ + D A+R P++ SSLI R++ + H AAP YL P Sbjct: 123 VVLELTLSDEQLDLVGEGYDLALR-AAPLKDSSLICRRIGEVARHLVAAPAYLAAHGMPQ 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + EL ++ + + + + W RP G +C+ NS L++ + + GI Sbjct: 182 QLSELGRYACLVHSAMPVWPLLEGGW-----RPQG----ACVS-NSLLALREMALHDGGI 231 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ALLP ++ + + L +++ D P+ Y YP L+ +F+ Sbjct: 232 ALLPHHVCEGDLAAGRLQKVLPDQPIPANPFYLIYPSREHLAPALRTLMDFV 283 >gi|159042679|ref|YP_001531473.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157910439|gb|ABV91872.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 302 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + +P+G LRI+ D G L L FL +P+IQI + Sbjct: 66 YDRARHVLNDAGEADAMVNAMQSEPNGLLRISVATDFGVKHLSPVLAGFLHQFPEIQINM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ ++ S+L RKL T AAP YL+ P I +L Sbjct: 126 VLNNRYVELISEGFDLALRV-GDLEDSTLRARKLATTSKRMIAAPSYLEKFGHPKRIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 H L+ + + + W T P GE R L VN S++ G GIA Sbjct: 185 SDHKLLHYSNQSSGNL----WKITA--PSGEKRQVRTGGWLTVNDGQSLLNAAKTGLGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ +D ++V ++ D+ +Y YP K++AF +F+ Sbjct: 239 YLPSFLFEDALGRGDVVEVLPDLPYDDLGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|227327903|ref|ZP_03831927.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 297 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 6/287 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA +L LSQS++S I GLE +G++L R R + TE G Sbjct: 5 NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 KL + +E+ I L + +P+G +RI ++L LK FL YPDI Sbjct: 65 EKLAHSLGPHFADIESELIALGDMRERPAGNIRITAGEHAVDSVLWPVLKPFLANYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI + D IRL + ++ + R + M +P+Y P + Sbjct: 125 VEITMDNALADIVLGRFDAGIRLGEQVEKDMIAVRVAPEMSMAVVGSPNYFARNLAPATP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L H I +P + W R I L +NS + ++G G+A Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAWEFEKNGREIKVRVEGQLTMNSLRQRIDAALIGLGLA 242 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P+ V+D+ L R++ + +P Y YP ++T F Sbjct: 243 YVPEDAVRDDIASGRLTRVLTEWCSPFPGYYLYYPSRKQHTTAFSLF 289 >gi|126733985|ref|ZP_01749732.1| transcriptional regulator, LysR family, putative [Roseobacter sp. CCS2] gi|126716851|gb|EBA13715.1| transcriptional regulator, LysR family, putative [Roseobacter sp. CCS2] Length = 295 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G + Sbjct: 1 MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + PSG LRI+ D G N L L +FL +PDI + + Sbjct: 61 DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLTEFPDITVNMA 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L+ Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIASPAYFEQYGRPEKIDDLN 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 +H L+ + + + W T P GE R L VN S++ C+ G GIA Sbjct: 180 EHKLLHYSNQANSAV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNACIGGLGIAY 233 Query: 244 LPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D LV + D+ + +Y YP K++AF +F+ Sbjct: 234 LPSFLYADAMQQGLVEEAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 283 >gi|89899616|ref|YP_522087.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344353|gb|ABD68556.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 312 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 17/283 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 D + L +F VA GSF+ AAE++ L +S++SR+++ LE +G +L R R +LTE Sbjct: 14 GIDPNDLLIFANVAELGSFSRAAERMGLPKSTVSRRLAALEQRLGERLLLRTTRRQSLTE 73 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L +V ++E + PSG+LR++ D LL L F+ LYP Sbjct: 74 FGLQLLEHARQVVSEVEAVTALSERRQATPSGRLRVSMPSDFANLLLADTLAAFIALYPA 133 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQ++L L + +D+ + D A+R+ +SL R+L YAAP YL EP Sbjct: 134 IQLELDLSPRRVDLLGEGFDVALRMGNLPDDASLAARRLAVFSFGLYAAPSYLAEHGEPA 193 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCL-----QVNSYLSIMQYC 235 +L +H I ++ E +W LA GE R + N+ +++ Sbjct: 194 DPDDLVRHAAIR---MLQANGEAASWTLAQ-----GEQRWQGVPPGRASANAPELLIKLA 245 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 G+GIA +PDY + L R++ PS + +PE Sbjct: 246 CAGAGIAAVPDYFAAPDVRRGALRRVLPGWCLPSHPAWAVFPE 288 >gi|242239561|ref|YP_002987742.1| LysR family transcriptional regulator [Dickeya dadantii Ech703] gi|242131618|gb|ACS85920.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703] Length = 335 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 149/293 (50%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ L VF V SGSF+ A ++L+LS+S++S+++S LE +G++L +R R L+LTE G Sbjct: 3 DFSSLPVFVAVVESGSFSAAGKRLNLSKSAVSKRLSQLEERLGVRLLHRTTRQLSLTEAG 62 Query: 64 SKLHRVTS---EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 S + ++ + E +LQE +P G LR++ + G + L FL YP Sbjct: 63 SDYYDYAQRALQLAQQAEDAVTQLQE---RPQGTLRVSAPMAFGLRHISPLLPIFLHRYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L++D++ +D+ + D A+R+ + + SSLI R+L AAP YL+ P Sbjct: 120 EVSVDLLMDDRVVDLVGEGFDLAVRIGQ-LPDSSLIARRLAPCFSVLCAAPDYLQRTDVP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 I L HN + + L K ++++ D P+ + N+ ++ + G G Sbjct: 179 QHIDALKHHNCLFY--LYFKGGVEWSFEGP-DGPVRFQPHGNYRANNSEALFDALLAGVG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +P +IV LV ++ P ++Y YPE K++ F +F+ Sbjct: 236 ICQVPKFIVGPALSEGRLVEVLPQYRLPEHSIYAVYPERRHLPAKVRVFIDFL 288 >gi|90577236|ref|ZP_01233047.1| putative transcriptional regulator, LysR family protein [Vibrio angustum S14] gi|90440322|gb|EAS65502.1| putative transcriptional regulator, LysR family protein [Vibrio angustum S14] Length = 301 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 144/295 (48%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +FY + GSF+ AAE + L++S +S++I+ LE +G++L YR R LTLTE G Sbjct: 5 NNLLLFYHLIDKGSFSKAAEHIGLTKSVVSKRITALEQALGVQLIYRTTRKLTLTEAGDV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + EVY+ ++ + + +GK+RI G+ +L + F YPDI I+ Sbjct: 65 FYHHAREVYNAVQNAEDAMSGLGESLTGKIRITVPTISGELILPEAIAAFSRQYPDIHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ + D AIR + SS I R+LV A+P Y+K P + Sbjct: 125 MDLDNRFVDLVQEGFDIAIR-TGAMPDSSFIARQLVQARWVICASPCYIKQYGIPTQPYD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GS 239 L+KHN + + E WL ++ +G I L+V + L G Sbjct: 184 LEKHNCLGYSFQETGANE---WL--IEDTLG---IHTLKVKGNFTTNNASALRGAALHGQ 235 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+ +P +V ++ +LV ++ D + S +Y YP + K+K F I+ Sbjct: 236 GLVYIPKVLVAEDLKKGDLVEVLTDYVAKSLGIYAVYPYTKQQPMKVKLFIEHIY 290 >gi|227328001|ref|ZP_03832025.1| LysR family transcriptional activator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 303 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L++SS+S +IS LE ++G++L R R L LT G + Sbjct: 8 MALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI + LG LL EF +P + + ++ Sbjct: 68 IHCQEMLQASERADLAVQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQRFPAVSLDVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + ID+ + D A R KP SSLI R L + A+P YL L Q+L Sbjct: 128 ISDDVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHAALLHPQQLQ 186 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I L+ + E + WL + + I+ ++ L + + G+GI L Sbjct: 187 QHRCIAHHAWTEWLLHRGSELYRWL------LPDSHIT----DNLLYARECAIAGAGITL 236 Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LPD++ +D LVR++ D + +Y YP N+ L F +F+ Sbjct: 237 LPDFLCRDEAVSGKLVRVLPDWQAEANELYLVYPSRKLNSPALACFIDFVL 287 >gi|260432167|ref|ZP_05786138.1| LysR substrate binding domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415995|gb|EEX09254.1| LysR substrate binding domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 301 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 138/293 (47%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFANVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L FL YPDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSGFLAAYPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + + S+L RKL AAP Y++ P I +L Sbjct: 126 VLNNRYVELISEGFDVAVRIGE-LDDSTLRARKLTETVKRMVAAPSYIERFGRPAKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSSQSSGNV----WRLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ D ++++ + PS +Y YP K++AF +F+ Sbjct: 239 YLPSYLYADALKAGKVVDAM--PSLPDEVQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|116052216|ref|YP_788940.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115587437|gb|ABJ13452.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 307 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S+++ + LE + ++L R R L LT G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L+ + L +++ P G+LRI L + LL L EF YPDIQI Sbjct: 64 AYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC IR + ++ SL+ R++ + + YAAP YL+ P + Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182 Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL D H I G +P M R G ++ N+YL+ + Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMHRGE---ESLRVAGRHVLAVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ ++ L+ + ED +Y +P +GKL+ F ++ Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292 >gi|330448657|ref|ZP_08312305.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492848|dbj|GAA06802.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 292 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 140/289 (48%), Gaps = 13/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F VA SF AAE + S++SR+IS LE +G++L +R R + LTE G Sbjct: 5 DDMALFVEVANVMSFRQAAEITGVPNSTLSRRISALEKAIGLRLLHRTTRKIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + +L + + PSG +R++ ID + + L EF YP+I+++ Sbjct: 65 YYERCRRIVEEAKLAHQQLSDIAENPSGTVRVSAPIDFATHFIAPLLPEFTKQYPEIELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D++ +Y D AIR + +SS+LI RKL H + Y +P YL EP S E Sbjct: 125 FDLSSRRVDMTSEYFDVAIRAGES-ESSNLIARKLANFHHYIYGSPAYLAQYGEPQSPDE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H + ++ +W + ++ S L VNS I Q +L G+ LL Sbjct: 184 LTQHQCFSI-------VKSAHWALHSQEKSADIKVNSKLFVNSIGMIKQLTLLNMGLGLL 236 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ D L RI+ + +Y E K + F NFI Sbjct: 237 PQEMITDELAQGTLKRILPEWQGAPVPIY-AITETRLLPAKTRCFINFI 284 >gi|229588826|ref|YP_002870945.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360692|emb|CAY47550.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA FT AAE+L +S S ISRQ++ LE + +L YR R +TLTE G Sbjct: 6 WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRKVTLTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMALYPQLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S ++ +L M+ A+P YL P S+ Sbjct: 126 DIELSNRPLDLVHEGLDLAIRLGR-LQDSRMVASRLAPRRMYLCASPSYLARYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + D LA R + + NS +++ + G G+ L Sbjct: 185 ELSRHNCLIGSS-------DIWQLAQDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + + LV ++E P+ V+ YP+ + K++ +F+ Sbjct: 238 PDYYVLEHLHSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDFL 286 >gi|323525077|ref|YP_004227230.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382079|gb|ADX54170.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 305 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 142/303 (46%), Gaps = 16/303 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA + +S ++SR ++ LE +G +LF R +R L LTE G Sbjct: 6 DFEGLAMFAKVAEEGSFAAAARAMGVSVPTVSRAVARLEERLGARLFNRTSRQLALTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +VY E + +E S +P G +R+A + G + L +FL YP++ Sbjct: 66 RTVCEKAGDVYRLAEDAENAAREMSAEPRGLIRLAVPMSFGVRWVAPLLPDFLRRYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D A+R+ + SSL+ R+L + A P YL+ C PL Sbjct: 126 VDLHLSDATVDLVAQGFDAALRI-AALPDSSLVARRLCAVSQLLVATPGYLQRCGRPLHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGS 239 +EL +T+ + D W T D GE L+VN+ +++ + G Sbjct: 185 RELAARPCLTYAY---RARSDV-WRFTND--AGEEEAVTPAGPLRVNNADALLPTLLAGL 238 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294 IA LPD++ + + L I+ +YF P A K+ A +F+ L A Sbjct: 239 AIAELPDFMASEYLADGRLEAILSGWHLTRGGLYFVTPSARARPAKVAALADFLAAHLSA 298 Query: 295 RDW 297 W Sbjct: 299 PAW 301 >gi|294139953|ref|YP_003555931.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293326422|dbj|BAJ01153.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 299 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 14/297 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++++VF+ V SGSF+ AA+ LH++ SSI+R I LE ++ LF R R L LTE+GS Sbjct: 3 EQIKVFHQVVDSGSFSQAAQVLHMAPSSIARNIDSLEAQLKTTLFKRSTRQLILTEEGSY 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ + E++ + P G LRI+ G L + EFL +YPD+Q+ Sbjct: 63 FYKQSGKLVEDADILLAEMRGAQDTPQGLLRISVFESFGNLCLAPIIPEFLQMYPDVQVD 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LDNK +D+ D D AIR+ P Q S L RKL+ A+P Y++ + + Sbjct: 123 LDLDNKLVDLHSDNVDLAIRIGVP-QDSGLKARKLLENRTLLTASPIYVEQHKTITQPSD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 L +HN + LI + + +W + + ++ ++ S + L G G+ LL Sbjct: 182 LGEHNCL----LISQERQRNHWYFNKGKSKRKVSVTGNLISKGGSPLLIAALKGCGVLLL 237 Query: 245 PDYIVK---DNPNLVRIMEDVI-----TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +++VK ++ +LV I+ D S +Y Y +A ++AF +F+ K Sbjct: 238 SEWMVKPYLESKDLVAILPDWTVNHRENGSGEIYAIYKDAQYPKPHIRAFLDFMVNK 294 >gi|225024636|ref|ZP_03713828.1| hypothetical protein EIKCOROL_01513 [Eikenella corrodens ATCC 23834] gi|224942599|gb|EEG23808.1| hypothetical protein EIKCOROL_01513 [Eikenella corrodens ATCC 23834] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 90/294 (30%), Positives = 141/294 (47%), Gaps = 16/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V SGSFT AAEQL +S S+ ++ LE V +L YR+ R L+LTEQG + Sbjct: 7 MKVFCQVVHSGSFTRAAEQLDISVPMASKHVAHLEKSVNARLLYRNNRRLSLTEQGEAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R LE S+ + G+LR++ + + G + E+ YP++ + L Sbjct: 67 RDCLSALDLLEQAAARAAGSTARVQGRLRVSIPVWFANPVFAGWITEYRRRYPEVSLHLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N +++ D D A+RL K + +LI R L I H AAP YL P + Q+L Sbjct: 127 LTNHSVNLDGDGEDVALRLSKQ-PAENLIARALAKIDFHLVAAPAYLAEHGTPAAPQDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGIAL 243 +H I +P D + L R GE LQ N+ + Q G+GI Sbjct: 186 QHQAI-----LP-SYTDVSALTLQGR--GESHNIELQAAIHSNNTQMLYQLVCAGAGIGY 237 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 LP+++++ + L R++ D T Y Y + + K+++F +F+ KA Sbjct: 238 LPEWLLRADLQTGRLRRLLPDHRTAPVPFYAVYTQRKLLSAKVRSFIDFMVEKA 291 >gi|261251307|ref|ZP_05943881.1| transcriptional regulator [Vibrio orientalis CIP 102891] gi|260938180|gb|EEX94168.1| transcriptional regulator [Vibrio orientalis CIP 102891] Length = 315 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 148/293 (50%), Gaps = 11/293 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + ISR++S LE + +KLF R R ++LTE G Sbjct: 29 NWEGVSEFVGVAETQSFTAAANKLDTSVAQISRRVSALEERLAVKLFNRTTRKVSLTEAG 88 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + P G L++ + G+ L L +FL LYP + Sbjct: 89 QLYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGEQHLAPLLHQFLELYPQVN 148 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+L N+ +D+ D AIRL + +Q SSLI ++L + ++ A+P YL EP ++ Sbjct: 149 LDLMLTNQKLDLIELGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPDYLDRFGEPHTL 207 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H + G + D ++ R G RI C NS +++ G G+A Sbjct: 208 SELSNHQCLV-GSVEYWRFRDTKGEKSM-RVSG--RIHC---NSGYALLDAAKRGLGLAQ 260 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LPD+ V+ D LV ++ + ++ YP+ + K++ +F+ K Sbjct: 261 LPDHYVQEALDTGELVEVLTEYRDEREGIWALYPQNRNLSPKVRLLIDFLAEK 313 >gi|257487058|ref|ZP_05641099.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330894617|gb|EGH27278.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|330985133|gb|EGH83236.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009304|gb|EGH89360.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S ISRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S ++ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|241113206|ref|YP_002973041.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861414|gb|ACS59080.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 298 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + V V +SGSF AAE + LS S +SR IS LE +G++L R R + LT+ G++ Sbjct: 8 NGVSVLAAVIQSGSFARAAESMGLSASGVSRAISRLEGRIGLRLLDRTTRTMRLTDDGAR 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +E + G+LR+ + +L L FL YPDIQI+ Sbjct: 68 FYEQVAPLLSGIEEAAQTAVGARQAVRGRLRVNVDPYFSRLVLGPRLGAFLDRYPDIQIE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I N+ D+ D D A+R +P Q SLI R L+ + AAP Y++ P Q+ Sbjct: 128 IITRNEIGDLVADGMDVAVRFGEPAQ-RSLISRLLMQTRVITIAAPAYIERFGRPSRPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243 L +H I F D P F W L + + S + VN + + C+ G GIA Sbjct: 187 LSEHTCIQFQD--PLTARPFEWELRWGEEVVSIETRSRILVNDAGTTLATCLAGIGIAQV 244 Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + DY+ N LV + D +F +Y YP K++A +F Sbjct: 245 FSLGMADYL--SNGQLVNLFPDWSDETFPLYAFYPSRQHIPAKVRALIDF 292 >gi|167565098|ref|ZP_02358014.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] gi|167575012|ref|ZP_02367886.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 296 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D LR+F +GSFT AA++L LS+ +SR++ LE +G++L R+ R L +TE G Sbjct: 3 FDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGQ 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + H + + ++ T+ + G L+I+ + G L + EFL+ +P +++ Sbjct: 63 EFHARATRILAEIADTEEAMSARRRDLRGTLKISAPMSFGITHLSPLIAEFLVQHPAVRL 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D A+R+ + S+LI R+L + M A +P Y ++ P + Sbjct: 123 HLELSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRSRGTPATPA 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L +H + +G W +D G R L N+ I V G G Sbjct: 182 DLHRHACLLYGQ-----EGRAGWEFVID---GARRTFEVQGALLANNGEVIRDAAVAGLG 233 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP +IV D LV ++E V YP+ ++ + F FI Sbjct: 234 IALLPHFIVAPPLDAGTLVTVLEPFAQSPLPVNAVYPQHRQDMAACRVFLGFI 286 >gi|154252670|ref|YP_001413494.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156620|gb|ABS63837.1| transcriptional regulator, LysR family [Parvibaculum lavamentivorans DS-1] Length = 310 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 150/299 (50%), Gaps = 12/299 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + V+ V G FT AA+ L LS+S +SR ++ LE E+G++L R R +++T Sbjct: 1 MAVDLNGYAVYAKVVELGGFTAAADALGLSKSMVSRHVATLEDELGVRLLNRTTRRISVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQ--ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E G + + + E E +V+ G LR+ + G L + EFL Sbjct: 61 EAGGVVFERAQRIVAEAAEAANEATCVEGAVR--GLLRVNAPMTFGIRQLGPVMPEFLAR 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YPD+ + L L+++ +D+ + D ++R+ + SSLI R+L + H AP Y + Sbjct: 119 YPDLNVDLTLNDRRVDLIEEGFDVSLRV-SALTDSSLIARQLAPVERHIVGAPGYFEKHG 177 Query: 179 EPLSIQELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P S +L H+ + + L P +E + ++ + R+ C N+ ++++ Sbjct: 178 VPKSPTDLAGHDFLLYTLLARPTHLEMTHEDGRREQVEVKGRMFC---NNADAMLETIAA 234 Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+G+ALLPD+I D+ VR++ED P T++ YP + K++AF +F K Sbjct: 235 GAGLALLPDFIGCDHMKSRAFVRVLEDWSMPPLTLHVLYPHSRHLPAKVRAFVDFAVEK 293 >gi|320323097|gb|EFW79186.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329631|gb|EFW85620.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330878093|gb|EGH12242.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S ISRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S ++ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|91786426|ref|YP_547378.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gi|91695651|gb|ABE42480.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 307 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 147/297 (49%), Gaps = 12/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V +GSF+ A+++ +QS+IS+Q++ LE E+G KL R R L+L+E+G + Sbjct: 7 MKTFVRVVEAGSFSAVADEMRATQSAISKQVAALEKELGTKLLIRTTRSLSLSEEGERYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + +L++ + SG LR+A ++ G+ L +K F+ + ++I L Sbjct: 67 EQARRLVGEIAEAESDLRKGEGRLSGWLRVAASVGFGRLKLMPLVKAFMDTHAGVKIDLR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL----KNCREPLSI 183 L + ID+ D ++R+ + + S LI R++ T A YL K + P++ Sbjct: 127 LHDGFIDLIEQGIDISVRIGE-LPDSGLIARRVGTSQRMLLAHRDYLRSLPKGVKAPVNP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 ++L HN + + +L + + F A P+G + +Q NS I G Sbjct: 186 EDLSNHNCVVYTELATRNLWAFEAGAGASEPLGTVKAVRVGGRIQTNSSEVIRSAVTAGM 245 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI P ++ + +VR+M D +P ++ P K++ K+KAF + L+ Sbjct: 246 GIGYSPTWLFESELARGEVVRVMPDWQSPHLPIHMVSPPERKHSAKVKAFVEHVALE 302 >gi|262275098|ref|ZP_06052909.1| transcriptional regulator LysR family [Grimontia hollisae CIP 101886] gi|262221661|gb|EEY72975.1| transcriptional regulator LysR family [Grimontia hollisae CIP 101886] Length = 312 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + F V SGSFT AA +L +S S +SR+I LE + +L YR R +TLTE G Sbjct: 4 WSGVEEFVEVVNSGSFTAAARKLGVSTSHVSRRIDALECRLSTRLLYRTTRQITLTEVGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +++ K + + + +P G L+I G+ + + +F+ ++P + + Sbjct: 64 MYFEQCNDLIEKFAEVEALVTQMQTEPVGTLKITAPSVFGEKFIAPLVNDFIDVHPRLSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + N +D+ D D AIR ++ S+L+ +KL ++ A+P YL+ P++I Sbjct: 124 EFHFTNDVVDLVHDGYDLAIRT-GDLKDSTLMAKKLAPRKLYVCASPAYLREFGAPVNID 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L HN + G + +D T+ +P G NS +++ + G GIA L Sbjct: 183 DLQNHNCL-IGLVDSWSFQDGGATVTI-KPRGR-----WHGNSGSAVLDAALHGLGIAQL 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + LV ++ D P V+ YP + K++ F +F+ Sbjct: 236 PDYYVSQKILSGELVEVLADYQAPDSAVWAVYPFNRNLSAKVRQFVDFL 284 >gi|311104236|ref|YP_003977089.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758925|gb|ADP14374.1| bacterial regulatory helix-turn-helix protein, LysR family protein 33 [Achromobacter xylosoxidans A8] Length = 310 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 9/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ + V GSF AA+++ ++S ++RQI+ LE + G++L R R L++T+ G + Sbjct: 7 MQTYAKVVELGSFAAAADKMGQARSVVTRQIAYLEQKYGVRLLNRTTRKLSMTDAGRAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ LQ +PSG+LR++ + G L + E+L YPD+ I L Sbjct: 67 ERVRPILAEVADLELSLQAEGQRPSGRLRVSAPVSFGILHLGPAIAEYLQRYPDVIIDLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ D D A+R+ P+Q SSL+ R L + AAP YL+ P + +EL Sbjct: 127 LNDRVVDLVEDGYDVAVRI-GPLQDSSLVARPLAPQQLLVCAAPEYLRRHGTPQTPEELK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + W D R+ + L+ N+ + + G GI L PD Sbjct: 186 QHRCLHYA----YASTGNEWHFEKDGVTHLVRVNAALRANNGDVLRTAALAGHGIILQPD 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++V D+ LV ++ D S ++Y YP + K+++F Sbjct: 242 FLVGDDIRAHRLVALLTDYTHTSISMYAVYPHRRFLSPKVRSF 284 >gi|261252401|ref|ZP_05944974.1| putative transcriptional regulator LysR family [Vibrio orientalis CIP 102891] gi|260935792|gb|EEX91781.1| putative transcriptional regulator LysR family [Vibrio orientalis CIP 102891] Length = 291 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 141/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE + ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEESLNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S + ++L E+ + +GK+RI +L + ++ F++ YPDI I+ Sbjct: 64 FFNECSPLLNRLTCAAEEITDECRGAAGKIRIIAPSNLTKRMMMPMFNGFMIQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L N+ + D R+ P + SSLI RK+ + A+P YLK P +E Sbjct: 124 LTTSNQADQLDPTEWDVIFRV-GPQRDSSLIARKISAVEDILVASPEYLKKYPAPQHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+L+ L+ + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LHQHSLLKGAPLLKWQLSNNSGEIVVNNDKGR-----FQANTLNVVRSACSDGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K D+ +LVR++E+ +Y Y K++ F +F+ Sbjct: 238 DVMIKEYIDDGSLVRVLENWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|295096919|emb|CBK86009.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 301 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/298 (30%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S+ISR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELTIFVAVVESGSFSRAAEQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSVLQEMAAAETEIMESRSTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPQYIAEHGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I+C L NS ++ Q C+ G Sbjct: 180 ETVEELKQHLCLGFTE--PVSLN--TWPVACHDGQLHE--ITCGLSSNSGETLKQLCLEG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV +M D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIAAGQLVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|116252690|ref|YP_768528.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257338|emb|CAK08433.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 144/284 (50%), Gaps = 16/284 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GSFT AA L + ++++SR+I+ LE E+G++L R R L+LT G + Sbjct: 2 IFARVTEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSLTASGRLYYEE 61 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +S+ +E + L E+ +P+G +RI+ + G + LQ + EFL YP +++L L Sbjct: 62 SSQALRTIEDANLRLAETRAEPAGTIRISAPVGFGGHFLQDAIFEFLSTYPKTRVELRLT 121 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +++ + D A R ++ S+LI RKL + H A+P YL C P ++L H Sbjct: 122 DDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLVRCGSPDVPEDLAHH 180 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP- 245 + + G WL ++ P G+ I+ N ++M + G GIA LP Sbjct: 181 DCVIAGQ-----SAHAQWL--LEGPQGQETIAVSGRFAANEMQAVMAAAIAGHGIAQLPH 233 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 D +KD L R+++ TP+ ++ YP + +KAF Sbjct: 234 GIADACIKDG-RLRRVLDGYTTPAGGLHVVYPSSRHLPPLVKAF 276 >gi|254460552|ref|ZP_05073968.1| transcriptional regulator, LysR family [Rhodobacterales bacterium HTCC2083] gi|206677141|gb|EDZ41628.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium HTCC2083] Length = 302 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + DW +R F VA +GS + AA L SQ ++ RQI LE ++G++LF R RG LT+ Sbjct: 7 NLDWSLIRAFLAVAETGSLSAAARSLSQSQPTLGRQIKLLEEQIGLRLFERQTRGFRLTD 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L E+ + K G +RI + + ++L + PD Sbjct: 67 TGESLLEPAQEMRAAFGKLSLRAAGRDHKMQGTVRITASEVMAHHVLPSIIAGIREEEPD 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQI+++ + ++ AD A+R+ + Q +I +++ T M YAA YL P Sbjct: 127 IQIEIVPSDASENLLFREADIAVRMYRSTQ-LDVITKQISTAKMGIYAAKSYLAKHGTPE 185 Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 I++L +H+++ + D I M D W AT D + C N+Y +++ G Sbjct: 186 RIEDLLEHSIVGYDRDDRIIVGMRDLGWPATRDF----FDVRCDDQNTYWELVRA---GC 238 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G+ +P + R++ DV P+ ++ PE ++ T ++K Sbjct: 239 GVGFTQQSFASVDPLIARVLPDVDLPTLPIWLAAPEIMRATPRIK 283 >gi|117618871|ref|YP_857840.1| LysR family transcriptional activator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560278|gb|ABK37226.1| LysR-family transcriptional activator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 282 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 14/284 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V GSFT AAE L + +SS+S++IS LE+++G++L R R L+LT QG Sbjct: 3 LFATVVEQGSFTGAAELLGMPKSSVSQKISRLESQLGVRLLQRTTRRLSLTPQGEVYVEQ 62 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + + P+G++RI G LL L EF LYP++ ++L L Sbjct: 63 CRALLALARSANLAMARLRAAPAGRVRITAPEATGTLLLGRILAEFRALYPEVVLELTLC 122 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R P++ SSLI R++ + H AAP YL P + EL ++ Sbjct: 123 DEQLDLVGEGYDLALR-AAPLKDSSLICRRIGQVPRHLVAAPAYLAAHGMPQQLSELGRY 181 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + L +++ W RP G +CL NS L++ + + GIALLP ++ Sbjct: 182 ACLVHTSLPVWPLQEGGW-----RPQG----ACLS-NSLLALRELAINEGGIALLPHHVC 231 Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + L +++ P+ Y YP L++ +F+ Sbjct: 232 EGDLAAGRLQKVLPSHPIPANPFYLIYPSREHLAPALRSLMDFV 275 >gi|296387269|ref|ZP_06876768.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313109623|ref|ZP_07795570.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882072|gb|EFQ40666.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 307 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S+++ + LE + ++L R R L LT G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L+ + L +++ P G+LRI L + LL L EF YPDIQI Sbjct: 64 AYYERVIRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC IR + ++ SL+ R++ + + YAAP YL+ P + Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182 Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL D H I G +P M R G ++ N+YL+ + Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMHRGE---ESLRVAGRHVLAVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ ++ L+ + ED +Y +P +GKL+ F ++ Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292 >gi|295699606|ref|YP_003607499.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438819|gb|ADG17988.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 303 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + +FT AA +L LS+ +SR++ LE +G++L R+ R L +T+ G + Sbjct: 4 DDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEEALGVQLLIRNTRKLAVTDLGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + + P G LR++ + G L + FL + D++ Sbjct: 64 FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVAAFLREHRDVRFD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D AIR+ + SSLI +KL+ + M A +P YL+ P+ + Sbjct: 124 MELSDRAVDVVGEGFDMAIRI-GTLADSSLIAQKLMDVRMIACCSPAYLRRRGSPVVPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H+ + +G NW VD + + L+ N+ I V G GI L Sbjct: 183 LANHDCLLYGH-----GGAVNWEFRVDGAVKSVEVRGPLRANNGELIRDSAVAGLGIVRL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+I+ D + LV ++E + + VY YP+ +++ ++AF F+ Sbjct: 238 PDFIIADALASGQLVPVLEAFLPSATGVYAVYPQHRQSSVTIRAFVEFL 286 >gi|17545261|ref|NP_518663.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17427552|emb|CAD14070.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 305 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 21/286 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L +F V +GSFT AA +L L +SS+SR I+ LE ++ ++L R R L LT+ Sbjct: 1 MDLNQLALFVRVVEAGSFTAAAVRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++V S ++E E P GK+R+ D+G+ L+ + F+ YPDI Sbjct: 61 GQSLYQVASHALEEIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L +++D+ + D A+R+ + + SSL+ R L + + +A+P YL+ P + Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGVPQA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 +++L HN + F + W R +G + + V + L+ L Sbjct: 180 VRDLSHHNCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231 Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 G+GI LP Y + + N P LVR++ + T ++ P A Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPEYATSGEPLHLVTPTA 277 >gi|330820259|ref|YP_004349121.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327372254|gb|AEA63609.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 320 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 151/290 (52%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MQVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ Q + KP G LR+ LG+ ++ L EF YPDI++Q Sbjct: 67 EHCIRILTEISEADASFQVGNRKPHGALRVHMPSLLGRRVVLPALPEFHERYPDIELQFG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR+ P++ SS++ R++ ++ + A+P YL+ EP SI+EL+ Sbjct: 127 MSDRPVDLVRDGFDCEIRV-GPLEDSSMVARRVGVMNRVSCASPAYLEKFGEPRSIEELE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI----- 241 KH + F + + M W+ +D + E R+ S + VN + + + G G+ Sbjct: 186 KHRAVNFAYALGRPMP---WIFLIDGKLQEIRMNSIVTVNDSDAYVTCALEGFGLIQPTL 242 Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++P + + +LV I++ V + YP + ++ F ++I Sbjct: 243 FSVIPHLM---DGSLVEILQGVYPKPKPISIVYPHNRHLSMTVRVFADWI 289 >gi|307546057|ref|YP_003898536.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307218081|emb|CBV43351.1| transcriptional regulator, LysR family [Halomonas elongata DSM 2581] Length = 298 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 17/292 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD++ F V R G+F AAE+L +S S +SR +S LE+++ L YR R + LTE G Sbjct: 4 WDRVEAFIEVVRLGAFNAAAERLRVSSSHVSRLVSQLESQLDTPLLYRTTRRIRLTEAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ + ++E +PSG L + + G+ L + +F+ L+P +++ Sbjct: 64 LYYQHCHHLFDGFREAEAAIKELQTRPSGLLSLTSATTFGERYLAPLVHDFMRLHPQLEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + N+ +DI + D AIR+ +Q SSLI R+L + +P Y + +P ++ Sbjct: 124 NMHFTNRRVDIIDEGFDIAIRM-GTLQDSSLIARRLCERREYVVGSPDYFTHYGQPHALS 182 Query: 185 ELDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 EL +H +C+ +W VD E RI + NS +++ + G G+ Sbjct: 183 ELSRH----------RCLAGTRDHWRFDVDGVRREIRIDGPWRGNSGPALLDATLKGLGL 232 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LPDY V + L+ +++ V+ YP + K++ F +++ Sbjct: 233 AQLPDYYVDQHLARGELISVLDAYRHDDTAVWAVYPRHRHRSPKVRQFLDYL 284 >gi|327392828|dbj|BAK10250.1| putative HTH-type transcriptional regulator YafC [Pantoea ananatis AJ13355] Length = 312 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+VF V SGSF+ AAE L ++ S++SR I LET++G+ L R R L LT Sbjct: 1 MKASSEELKVFVSVVESGSFSRAAETLEMANSAVSRTIKKLETKLGLALLTRTTRNLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + + + + EL ES P G LRI + +L+ +K F YP Sbjct: 61 QEGERYFQQVQHFLQVMTAAENELMESRDVPKGLLRIDAATPVILHLIMPMIKSFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI + LI I++ D AIR + S L R L + A+P YLK P Sbjct: 121 DIALSLISSENFINLIERKVDVAIRA-GSLTDSGLRARLLFISYRRLIASPDYLKKHGIP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +LD H + F D P+ W + S L NS +I Q C+ G+G Sbjct: 180 LRAADLDNHQCLGFID-APRLN---RWPVACEGGELYGIRSELDSNSGETIKQLCLEGNG 235 Query: 241 IALLPDYIVK---DNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA L DY+V + +LV IM D V P VY+ L T +++AF +F+ Sbjct: 236 IACLSDYMVHKEIEEGSLVEIMADQRLPVEMPFNAVYYS---DLGVTQRVRAFIDFL 289 >gi|170702385|ref|ZP_02893275.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170132699|gb|EDT01137.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 305 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 10/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA +S +++SR ++ LE +G +LF R +R L+LTE G Sbjct: 6 DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+Y + E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 RTISEQAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D A+R+ + SSL+ R+L + A+P YL+ P Sbjct: 126 IDLHLSDASVDLIADGFDAALRI-AALPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241 +EL +++ + W T D EP + L+V + +++ + G I Sbjct: 185 RELADRPCLSYAYRARSAL----WRFTNDVGDEEPVMPAGPLRVTNADALLPTLLDGLAI 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LP++I + + L I+ D +YF P A K+ A ++ Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARAAKVTALSDYF 292 >gi|261820666|ref|YP_003258772.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604679|gb|ACX87165.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 297 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 6/280 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VVAR SFT AA +L LSQS++S I GLE +G++L R R + TE G KL Sbjct: 12 FLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAGEKLAHSL 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +E+ + L + +P+G +RI ++L LK FL YPDI + + +DN Sbjct: 72 GPRFADIESELVALSDMRERPAGNIRITAGEHAIDSILWPVLKPFLANYPDINVDITMDN 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI++ D IRL + + + R + M +P+Y P + Q+L +H Sbjct: 132 ALTDIAIGRFDAGIRLGEQVAKGMIAVRIAPEMSMAVVGSPNYFARNPPPATPQDLHQHR 191 Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I +P + W R I L +NS + +G G+A +P+ V Sbjct: 192 CINM--RLPAMGGIYAWEFEKSGREIKVCVEGQLTMNSLRQRIDAAQIGLGVAYVPEDSV 249 Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +DN L+R++ + P Y YP ++T F Sbjct: 250 QDNIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLF 289 >gi|16759242|ref|NP_454859.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142983|ref|NP_806325.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162314|ref|ZP_03348024.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417582|ref|ZP_03350724.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428409|ref|ZP_03361159.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213619182|ref|ZP_03373008.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213857339|ref|ZP_03384310.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25319826|pir||AF0533 hypothetical transcription regulator yafC [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501533|emb|CAD08710.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29138615|gb|AAO70185.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 304 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKVIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 S++EL +H + F + I N W +A D + E I C + NS ++ Q C+ Sbjct: 180 ESVEELKQHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLN 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|220925972|ref|YP_002501274.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950579|gb|ACL60971.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 297 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 134/273 (49%), Gaps = 6/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR GSFT AA +L +SQS++S + GLE +GI+L R R ++ TE G + Sbjct: 7 NDLAAFLAVAREGSFTRAAAKLGVSQSALSHSLKGLEARLGIRLLTRTTRSVSPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + + +++ L + KP+G +RI+ ++++ L+ L YPD+ ++ Sbjct: 67 LVRTLAPRFDEIDAELAALTKYREKPAGNVRISAGEHAAESIIWPTLERLLPEYPDVTVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +++DN +I + D +RL + ++ + R + M A AP Y + R+P + ++ Sbjct: 127 VVVDNGLTNIVAERYDAGVRLGEQVEKDMVAVRIGPDMRMAAVVAPSYFEGRRKPRTPED 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H I +P + W R + L VN+ ++ + G G+A L Sbjct: 187 LTGHACINL--RLPTRGGIYAWEFEKGSRALNVRVEGPLVVNTGSMALKAALSGLGMAYL 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P+ V+ D LVR++ D P + YP Sbjct: 245 PEDRVRTGLDEGRLVRVLADWCPPFPGYHLYYP 277 >gi|90414557|ref|ZP_01222531.1| transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90324364|gb|EAS40930.1| transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 291 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V ++G FT AAE L L +S++SR+++ LE+++G++L R R + +TE G Sbjct: 3 IFARVVQAGGFTAAAEILALPKSNVSRRVARLESDLGVRLLERTTRKIHVTEIGEIYFHH 62 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + E + +Q +P G LR++ ++ GQ LL L F+ +P+I++QL L Sbjct: 63 CLRIIEESEHADLSVQSMVAEPRGILRVSASVTTGQQLLAPLLPSFMAQFPNIELQLELT 122 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ ID+ + D AIR+ ++ S L+ RKL H YA+ YL ++L H Sbjct: 123 NRRIDLIEEGLDVAIRV-GLLEDSRLVSRKLGVSQHHLYASQTYLDQQALLTEPEQLCSH 181 Query: 190 NLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 ++ D K + N + +P + N + S+ Q+ G GIA+LP Y Sbjct: 182 RVLLMSDQAGAKKHVVVLNKNEQTQQISVQPLCTA---NDFHSLHQFAKQGMGIAVLPHY 238 Query: 248 IVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + LVR++ PS + YP T KL+ F +F+ Sbjct: 239 MCHDPDDKLVRVLPAWSCPSLDFHAIYPSHRGATPKLRVFLDFM 282 >gi|172065228|ref|YP_001815940.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997470|gb|ACB68387.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 305 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AAE LH+S++++++ + LE + ++L R R + +T G Sbjct: 4 FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTPDGI 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + L +S P G+LR+ + +L L FL YPDIQ+ Sbjct: 64 AYYERVTRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +DI + DC +R +P S++ R++ + + A+P YL P Sbjct: 124 DMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALASTPSHPA 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G L P M + V G ++ N+YL+ V Sbjct: 183 ELENSHHRIVGFSWGRTGKLYPLVMHRGDETVAVQ---GRYALAVDDGNAYLAA---GVA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ K + LV + +D +Y YP + KL+AF +++ Sbjct: 237 GLGIMWLPHYMAKAHLERGELVTLFDDWQLDPMPLYIAYPPNRHVSAKLRAFIDWV 292 >gi|24376372|ref|NP_720480.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24345286|gb|AAN53080.1|AE015922_9 transcriptional regulator, LysR family [Shewanella oneidensis MR-1] Length = 289 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 152/292 (52%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT AA+QL +S + +SRQ+S LET + KLF+R R ++++E Sbjct: 2 FNWEGVSEFVAVAEAESFTKAAKQLGISTAQVSRQVSALETRMATKLFHRTTRKVSVSEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + + P G L+I + G+ L + +F+ YP++ Sbjct: 62 GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEKTLVPLVNDFIAKYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ L N+ +D+ D D AIRL + ++ SS++ ++L + + A+P Y+ P S Sbjct: 122 EVKINLTNQKVDLIDDGYDLAIRLGQ-LKDSSIMAKRLGSRTQYVCASPDYVSTFGIPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 + EL++HN + G L D+ W + R+ L NS +++ + G GI Sbjct: 181 LSELEQHNCL-LGTL------DY-WRFQENGKTRNVRVKGNLTCNSGYALVDAAIKGIGI 232 Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+Y V ++ LV ++E P ++ YP + K++ +++ Sbjct: 233 IQLPEYYVLPFLEDGQLVPLLEQNRQPKEGIWALYPHNRHLSPKVRMLLDYL 284 >gi|27382676|ref|NP_774205.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355848|dbj|BAC52830.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 311 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 14/297 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F V SF AA +L +S++++S+ ++ LE +G +LF R +R L LT+ G Sbjct: 6 DFEALAIFAKVVELRSFAGAASELAMSKATVSKAVTRLEERLGARLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 KL + + E + E SV P G +R+A + G + L EF YP++ Sbjct: 66 HKLAERATRLLVDGEAAENEALAQSVAPRGLVRLAVPMTFGIKAVAPLLPEFFETYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + ID+ + D A+R+ + + SSLI R+L T+ AAP YLK P Sbjct: 126 VDLHLSDATIDLIGEGFDMAVRIAR-LPDSSLIARRLFTMPRFTVAAPSYLKRHGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +H ++ L P N A+V RP G+ L+VN+ ++M + G Sbjct: 185 MHLAEHKCFSYAYLSTPNVWHYTNSAGEQASV-RPGGQ-----LRVNNGEAVMPALIAGL 238 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA LP++IV + + + I++D V+ P +++A +F+ K Sbjct: 239 GIAELPEFIVGEAISSGEVEVILKDWKQAEGAVHLVTPPGGPRPARVEALADFLAAK 295 >gi|312959416|ref|ZP_07773933.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311286133|gb|EFQ64697.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 298 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA FT AAE+L +S S ISRQ++ LE + +L YR R +TLTE G Sbjct: 6 WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRKVTLTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLQHCQRLQDGREEALRAVGDLASEPKGMLRMTCAVAYGERFIVPLVTRFMGLYPQLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + + SS++ +L M+ A+P YL+ P S+ Sbjct: 126 DIELSNRQLDLVHEGLDLAIRLGR-LSDSSMVASRLAPRRMYVCASPSYLERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + D LA R + + NS +++ + G G+ L Sbjct: 185 ELSRHNCLIGSS-------DIWQLAQDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + LV ++E P+ V+ YP+ + K++ F+ Sbjct: 238 PDYYVLQHLHSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVGFL 286 >gi|238913724|ref|ZP_04657561.1| hypothetical protein SentesTe_21687 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 304 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 S++EL +H + F + I N W +A D + E I C + NS ++ Q C+ Sbjct: 180 ESVEELKRHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLN 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|171319478|ref|ZP_02908581.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171095287|gb|EDT40273.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 304 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 139/296 (46%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AAE LH+S++++++ + LE + ++L R R + +T G Sbjct: 4 FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTPDGI 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + L +S P G+LR+ + +L L FL YPDIQ+ Sbjct: 64 AYYERVTRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +DI + DC +R +P S++ R++ + + A+P YL P Sbjct: 124 DMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPSHPA 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G L P M V G + N+YL+ V Sbjct: 183 ELENSHHRIVGFSWGRAGKLYPLVMHRHGETVAVQ---GRYALVVDDGNAYLAA---GVA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ K + LV + ED +Y YP + KL+AF +++ Sbjct: 237 GLGIMWLPHYMAKAHLERGELVTLFEDWQLDPMPLYIAYPPNRHVSAKLRAFIDWV 292 >gi|260221488|emb|CBA30101.1| hypothetical protein Csp_A15470 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 304 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 141/298 (47%), Gaps = 21/298 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + F V +GSFT AA+ LH+S+++ ++ + LE + +KL R R + +T G+ Sbjct: 4 FDAMLAFVRVVEAGSFTKAAQTLHMSKTTATQLVQQLEARLRVKLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + L ++ P G+LR+ L + LL F YPDIQI Sbjct: 64 AYYERAVRLLIDLDDAETSLSSAAASPRGRLRVDVPSPLARMLLVPAFPAFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + ++ +D+ D DC IR + + SLI R + + + YAAP YL+ PL Sbjct: 124 ELGVSDRLVDLIGDNVDCVIRGGE-LTVPSLIARHVGDLRLGVYAAPSYLQRVGTPLHPL 182 Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRIS-----CLQVNSYLSIMQYC 235 +L +H ++ F + W P+ G RI L ++ + + Sbjct: 183 DLGGAEHRIVGF---LSSRTGKVLWF-----PLRRGAERIEIQGRYVLAIDDGNAYLAAA 234 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G G+ LPDY+ K+ N LV + ED S +Y +P + KL+ F N+I Sbjct: 235 VAGMGVVWLPDYMAKEHLKNGELVPLFEDWALDSMPMYLAFPPNRHVSMKLRVFINWI 292 >gi|170693923|ref|ZP_02885080.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170141341|gb|EDT09512.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 307 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 138/294 (46%), Gaps = 6/294 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +L++F + A GS + AAEQL +S ++ SR +S LE +G +L R R + LT+ G Sbjct: 4 WTQLQLFVLTADLGSLSKAAEQLDMSNAAASRTLSSLEERLGARLIERTTRRMWLTDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + HR + V +L E +V P G LR+ +++ + L EFL YP++ + Sbjct: 64 EYHRRCTAVISELSEADSIASEEAVSPRGVLRVTSSVSFAMMHIAPALPEFLTRYPNLSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q++ N+ + D AIR R+ S + R+L A+P YL P + + Sbjct: 124 QIVAANQYQNFIEAGIDIAIRTREHEGDSGITIRRLAETRRVLAASPAYLSAHGRPQNPE 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN++ + + + T +R I S L N I+ G GI + Sbjct: 184 DLAQHNMLVYNLAVDPYLLHLR-RGTEERNIAIA--SALDSNEGQVIVAAGRAGLGIVVQ 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 P YI+ D+ LV +++D P T+ Y K++ F +F+ + R Sbjct: 241 PLYIIHDDIVSGRLVPVLDDWQLPRLTINLAYQSRRYQPAKIRVFTDFLMERVR 294 >gi|238782715|ref|ZP_04626745.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC 43970] gi|238716375|gb|EEQ08357.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC 43970] Length = 302 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 139/292 (47%), Gaps = 20/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AAE L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFARVAECGSFTRAAEMAGLPKSSVSKRISQLEQGLGIRLINRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ H E + LQ PSG+LRI+T LG LL +F YPD+ ++++ Sbjct: 68 VHCQEMLHAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLLEVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186 + + +D+ + D A+R KP Q SSLI R+L + AAP YL PLS +L Sbjct: 128 VSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLAAPDYLAQ-HPPLSHPSQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIA 242 H+ C+ W A + R GE ++ V L + C L G GI Sbjct: 186 AMHH----------CIAHRAWQALILRREGEFYRWQVPVQHVTDNLLYARECALAGGGIT 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LLP ++ +D + L+ ++ +Y YP N+ L F + + Sbjct: 236 LLPAFLSRDVVASRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287 >gi|120600546|ref|YP_965120.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1] gi|120560639|gb|ABM26566.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1] Length = 298 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 13/277 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A ++L LS+S++S++I+ LE +G++L +R R L+LTE G+ Sbjct: 4 FSALPIFVTVVECGSFSAAGQKLGLSKSAVSKRITLLEQSLGLQLLHRTTRSLSLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E P G LRI+ + G+ + + EFL YPDIQ+ Sbjct: 64 RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RKL AA YL P + Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 L +HN + + + W + P G R+ QVN+ +I Q C+ G GI Sbjct: 183 ALTQHNCLFYSYF----QDGVEW--SFQSPNGVQRVQPKGNYQVNNSDAIHQACLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275 A LP +IV+ + R ++ D P +Y YP+ Sbjct: 237 ANLPRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQ 273 >gi|13476598|ref|NP_108168.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14027360|dbj|BAB53629.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 300 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 17/301 (5%) Query: 1 MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + V +A GSF AA+ L LS+S +SR +S LE VG++L R R + Sbjct: 1 MAFDGRVISNVGVLAAIAEGGSFARAADALGLSRSGVSRAVSRLEARVGVRLLDRTTRAV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT++G +L+ + + +E +SV G+LR+ + L ++ EFL Sbjct: 61 SLTDEGRRLYAEVAPLLTGIEDAVTVTSGTSVAVRGRLRVNVDAFFSRQLFTPHISEFLS 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYPD+ ++L+ ++ D+ + D AIR P SSL+ +KLV AAP YL Sbjct: 121 LYPDLSLELVARDQLGDLVAEGFDIAIRFGTP-PVSSLVVKKLVETRTVTVAAPAYLTAH 179 Query: 178 REPLSIQELDKHNLITFGD-LIPKCMEDFNW---LATVD-RPIGEPRISCLQVNSYLSIM 232 P +L +H I D L + +E++ + VD R G L V + +++ Sbjct: 180 GTPTIPADLVEHACIQVRDSLTGQPIEEWRFRRGAEVVDVRTTGR-----LMVTEFGTML 234 Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 C+ G GIA + V+ LV ++ D SF +Y YP K++AF +F Sbjct: 235 GACLDGVGIARIKAIGVQHLIQQGALVEVLPDWRGESFPLYALYPSRHLPPAKVRAFIDF 294 Query: 290 I 290 + Sbjct: 295 V 295 >gi|146294704|ref|YP_001185128.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145566394|gb|ABP77329.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] Length = 298 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 13/277 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A ++L LS+S++S++I+ LE +G++L +R R L+LTE G+ Sbjct: 4 FSALPIFVTVVECGSFSDAGQKLGLSKSAVSKRITLLEQSLGLQLLHRTTRSLSLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E P G LRI+ + G+ + + EFL YPDIQ+ Sbjct: 64 RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RKL AA YL P + Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 L +HN + + + W + P G R+ QVN+ +I Q C+ G GI Sbjct: 183 ALTQHNCLFYSYF----QDGVEW--SFQSPNGVQRVQPKGNYQVNNSDAIHQACLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275 A LP +IV+ + R ++ D P +Y YP+ Sbjct: 237 ANLPRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQ 273 >gi|239832917|ref|ZP_04681246.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239825184|gb|EEQ96752.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 309 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT+ Sbjct: 17 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTQA 76 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + ++ + + SG +RI G N L L YPD+ Sbjct: 77 GEEFLLAAERMEAEMLAARSQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 136 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q LI R+LV + YA YL+ P S Sbjct: 137 TIQLVPVPRSFSLSRREADIAITVERPEQ-GRLIARRLVDYTLGLYAHRRYLEENGTPES 195 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L +H LI + DL+ P+ D+ +V+S L ++ Sbjct: 196 PEDLPRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSALGQVE 241 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I + +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 242 AVRAGAGIGILHAFIARADPDLVPVLPDRVIRRAY--WLAYHESARTLRRVTAVSALI 297 >gi|198242091|ref|YP_002214212.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855768|ref|YP_002242419.1| hypothetical protein SEN0258 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197936607|gb|ACH73940.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206707571|emb|CAR31845.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326621956|gb|EGE28301.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 304 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 S++EL +H + F + I N W +A D + E I C + NS ++ Q C+ Sbjct: 180 ESVEELKQHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLS 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|88797688|ref|ZP_01113276.1| transcriptional regulator, LysR family protein [Reinekea sp. MED297] gi|88779365|gb|EAR10552.1| transcriptional regulator, LysR family protein [Reinekea sp. MED297] Length = 306 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 137/282 (48%), Gaps = 17/282 (6%) Query: 1 MSF--DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 MSF DW + F V +GSFT AA++L +S + +SRQ++ LE + +L YR R + Sbjct: 1 MSFIPDWAGIAEFVSVVETGSFTAAAKRLKVSTAQVSRQVNQLEQRLATQLLYRSTRRVR 60 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 ++E G + + + ET + +LQ P G+L + I G+ L + +F + Sbjct: 61 VSELGQRYYHQCRLLMDGFETAENDLQALQATPRGRLNLTAPITYGEQFLMPQVNDFQVQ 120 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP++ + + L N +DI D AIRL + + S L RKL T + +P YL+ C Sbjct: 121 YPELTVNVELTNTQLDIVDAGFDLAIRLGR-LSDSRLRARKLATRQVRTCCSPGYLRRCG 179 Query: 179 EPLSIQELDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 EP ++ EL +HN L + G + ++D L TV L+ NS S++ Sbjct: 180 EPHTLAELKRHNCLLGSVGQWRFR-VQDEEKLVTVS--------GSLRCNSGRSLLDAAS 230 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 GI LP+ V D + LV ++ S ++ YPE Sbjct: 231 KDIGIVQLPEEYVLDGLSDGTLVEVLSAYRPDSEGIWGVYPE 272 >gi|84389410|ref|ZP_00991216.1| putative transcriptional regulator [Vibrio splendidus 12B01] gi|84376925|gb|EAP93798.1| putative transcriptional regulator [Vibrio splendidus 12B01] Length = 289 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 17/293 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA SFT AA++L S + ISR+++ LE + +KLF R R ++LTE G Sbjct: 3 NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLFNRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + P G L++ + G+ L L +FL L+P ++ Sbjct: 63 QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+L N+ +D+ D AIRL + ++ SSL+ +KL ++ A+P Y++ EP ++ Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIERYGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSG 240 EL H + G E + + RP RI C NS L+++ G Sbjct: 182 SELSHHQCLVGG------FEHWRFKEN-KRPRSVRVNGRIRC---NSGLALLDAAKQSIG 231 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LP+Y V ++ LV ++ D ++ YP+ + K++ +F+ Sbjct: 232 LVQLPEYYVSEDLESGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFL 284 >gi|71736202|ref|YP_275955.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556755|gb|AAZ35966.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S ISRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQGLQDGREEALRAVGDLTSEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S ++ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072706|gb|ADJ62105.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 7/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GSF AAE L +S++++SR + LE +G +L R R L+LTE G+ Sbjct: 6 EIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ LE L S KP+G LRI + G L FL +P+I + + Sbjct: 66 LERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +DI + D AIR+ + + S+L+ RKL + +H A+P YL P EL Sbjct: 126 TLSDRIVDIIDEGYDMAIRIAR-LSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I++ K FN + P+ S L VN+ S +Q + G GI P Sbjct: 185 AQHQTISYSYNQSKDEWQFN---GPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPT 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ + LV I+ D P +Y YP K++A +F+ Sbjct: 242 FMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFL 288 >gi|293608489|ref|ZP_06690792.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829062|gb|EFF87424.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 301 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/280 (25%), Positives = 145/280 (51%), Gaps = 11/280 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V +GSF AAEQLHL++S+IS+ I+ LE ++G+ LF R R L++T Sbjct: 1 MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVALFKRTTRSLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + + +++ L + + +G+LR++ + GQ + +F + Sbjct: 61 DEGALFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+++ +++ +D+ + D IR+ ++ L+ + + M A+P YL Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPL 180 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +I++LD H I FG M+ + D P+ + L +N +I + Sbjct: 181 QNIEDLDHHATIADPHFGQ-----MQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G+GIA LPD+++++ LV+++E + + +F ++ +P Sbjct: 236 GAGIAWLPDWLIQNELQEGKLVQVLETMSSIAFPIHLVWP 275 >gi|54303664|ref|YP_133657.1| transcriptional regulator [Photobacterium profundum SS9] gi|46917095|emb|CAG23857.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 300 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 24/305 (7%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+F+ +D + VF V SGSFT AA S S IS++I+ LE +GI+L +R R L Sbjct: 1 MAFNAVLFDGMVVFTEVVNSGSFTQAALNSGHSTSYISKEINKLEARLGIRLLHRTTRTL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT +G + ++ + + + KP G+L+++ + G + L+ L +F Sbjct: 61 SLTPEGELYFQQCLQLIEDAQVAENAITGQQEKPQGRLKVSCPVSFGLSNLRPILSQFTE 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP+I ++L L+++ IDI + D AIR K + SSLI R++ + A+P YL+ Sbjct: 121 QYPEIVLELDLNDRKIDIVAEGYDVAIRASKQLDDSSLISRRIRRSYTVVIASPDYLQKH 180 Query: 178 REPLSIQELDKHNLITFG--------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229 P EL +H I++ DLI + + T+ PI + + NSY+ Sbjct: 181 GTPKHPSELSQHKTISYSYIRQGNSWDLIDQDGQ------TIHIPI---KSQVVTNNSYM 231 Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + C+ G GI +LP + + D LV + D ++ YP + K++ F Sbjct: 232 E-LALCMAGQGITILPHFHLHDEVEQGKLVALFTDFPRLPIDIFMVYPSRKHMSAKVRCF 290 Query: 287 RNFIF 291 +FI Sbjct: 291 LDFIM 295 >gi|193077028|gb|ABO11781.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC 17978] Length = 301 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 147/280 (52%), Gaps = 11/280 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V +GSF AAEQLHL++S+IS+ I+ LE ++G+ LF R R L++T Sbjct: 1 MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + + +++ L + + +G+LR++ + GQ + +F + Sbjct: 61 DEGALFYEHSRRALSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+++ +++++D+ + D IR+ ++ L+ + + M A+P YL Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 I++LD+H I FG M+ + D P+ + L +N +I + Sbjct: 181 EHIEDLDQHATIADPHFGQ-----MQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G+GIA LPD+++++ + LV++++ + + +F ++ +P Sbjct: 236 GAGIAWLPDWLIQNELQDGKLVQVLDAMSSTAFPIHLVWP 275 >gi|253690041|ref|YP_003019231.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756619|gb|ACT14695.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 302 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L++SS+S +IS LE ++G++L R R L LT G + Sbjct: 8 MALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI + LG LL EF +P + + ++ Sbjct: 68 IHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQRFPAVSLDVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + ID+ + D A R KP SSLI R L + A+P YL L Q+L Sbjct: 128 ISDAVIDLVQEGFDVAFRTGKP-HDSSLIGRPLGQTPRYLLASPDYLARHPALLHPQQLQ 186 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I L+ + E + WL + + I+ ++ L + + G+GI L Sbjct: 187 QHRCIAHHAWTEWLLHRGSELYRWL------LPDAHIT----DNLLYARECAIAGAGITL 236 Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LPD++ D+ LVR++ D + +Y YP N+ L F +F+ Sbjct: 237 LPDFLCLDDAVSGKLVRVLSDWQAEANELYLVYPSRKLNSPALACFIDFVL 287 >gi|163748493|ref|ZP_02155747.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] gi|161332071|gb|EDQ02748.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] Length = 300 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 5/285 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + VF V ++G F+ AAE + S S IS++++ LE +G++L R R + LT +G Sbjct: 7 FDGVMVFTQVVKTGGFSAAAELMGHSTSYISKEVNKLEERLGVRLLNRTTRSIALTPEGK 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E L + P G LR++T + G N LQ L E++ LYP++ + Sbjct: 67 AYYQECQQLVADAEQAVNMLTLHELAPKGILRLSTPVGFGNNYLQPILAEYMRLYPNVSL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+++ +D+ + D AIR ++ SSLI RK+ + + A+P YL P Q Sbjct: 127 DLDLNDRKVDVVAEGYDLAIRASLQLEESSLICRKIFSCKGYIVASPGYLSKHGRPHHPQ 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + +L K + + +P L NS + + GI L Sbjct: 187 ELSRHNCFCYSNL--KSPNKWQFNDKEGKPYSVEVRQKLVCNSAEMELALVLDDLGICRL 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P + +++ + L + ED+ P V+ YP + K++AF Sbjct: 245 PMFYMEEEIKSGKLEILFEDLPAPEIDVFVVYPSRKHLSPKVRAF 289 >gi|153832086|ref|ZP_01984753.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] gi|148871701|gb|EDL70542.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] Length = 300 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 8/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA Q+ L++S +S++I+ LE E+G++L YR R L +TE G Sbjct: 5 DDYIIFYHLVEQGSFSAAARQMELTKSVVSKRIAKLEQEIGVQLLYRTTRTLKVTEAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 VY + T + + SG ++I G+ +L + EF YPDI I Sbjct: 65 FFEHARSVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPTVISEFNQAYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ DI + D AIR + SSLI RKLV + A+P Y+ +P + + Sbjct: 125 MELDNRFADIVNEGFDLAIRT-GVLPDSSLIARKLVDANWIVCASPKYVAKHGKPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L KHN + + E W D + + ++ L N+ ++ +LG GI + Sbjct: 184 LTKHNCLVYAYQETGARE---WAFKRDDEVYQVKVDGNLCTNNSSALRNVALLGQGIIYV 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V ++ L+++ +D +Y YP + K+K F Sbjct: 241 PRVLVYEDLQQGKLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIF 285 >gi|157377364|ref|YP_001475964.1| carbonate dehydratase [Shewanella sediminis HAW-EB3] gi|157319738|gb|ABV38836.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3] Length = 289 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 152/292 (52%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT AA++L +S + +SRQ+S LET + KLF+R R +++TE Sbjct: 2 FNWEGVSEFVAVAEAESFTKAAKRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + + P G L+I + G+ L + +F+ YP++ Sbjct: 62 GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGERTLAPLVNDFIAKYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ L N+ +D+ + D AIRL + ++ SS++ ++L + + A+P Y+ P S Sbjct: 122 EVKVSLTNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASPGYVSTFGIPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 + EL++HN + G L D+ W + R+ L NS +++ + G GI Sbjct: 181 LSELEQHNCL-LGTL------DY-WRFQENGKTRNVRVKGNLSCNSGHALVDAAIKGIGI 232 Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V ++ L+ ++E P ++ YP + K++ +++ Sbjct: 233 IQLPDYYVLPYLEDGQLIPLLEQNRQPDEGIWALYPHNRHLSPKVRMLLDYL 284 >gi|144899149|emb|CAM76013.1| transcriptional regulator, LysR family [Magnetospirillum gryphiswaldense MSR-1] Length = 310 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 144/292 (49%), Gaps = 16/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD L +F +AR AAE+L + S++SR+I E E+G +LF R+ +G TLT QG Sbjct: 2 DWDNLHIFLELARGRRLMDAAERLGIDYSTVSRRIRRFEQELGTQLFDRNNQGYTLTAQG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +V + Q +L + SG++R+A T G + L L F +P I Sbjct: 62 LHLVEYAEKVEAIVHLAQEKLTGHNSALSGQIRLACTEGFGTHFLAAQLAHFCARHPHIT 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182 + + ++ +++ AD AI + +P + I KL H+ YA+P YL R P+ + Sbjct: 122 LDFLPLSRFVNLPKREADMAISIERPDSGNYAIA-KLCDYHLKLYASPAYLAE-RGPITA 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL---G 238 +L H I + DL+ E+ +L + + R+S N ++ C G Sbjct: 180 ASDLQNHTFIGYVDDLV--FSEELRYLEQI---VTADRVSYRSTN----VVAQCSAVRQG 230 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +G+A+LP ++ + +LV ++ED + + + PE N ++KA R F+ Sbjct: 231 TGLAVLPCFLASPHADLVPVLEDQVLFKRSFWLVTPEERHNLARIKALRQFV 282 >gi|197121000|ref|YP_002132951.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196170849|gb|ACG71822.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K] Length = 319 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 134/286 (46%), Gaps = 7/286 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+VF VA +G F A +L LS +++R I+ LE VG +LF R R + TE G + Sbjct: 6 QLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGLRF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V LET + E PSG L + ++ G+ L ++ FL L+P + L Sbjct: 66 LDPARRVLADLETAEREAAGEGAAPSGHLTLTASVTFGRWALAPVVRAFLGLHPGVTASL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D A+R+ + + S L+ RK+ I A+P YL+ P S L Sbjct: 126 VLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPSSPARL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H I F L + ++ ++ RP+ P L VN L+ + G GI L Sbjct: 185 RAHAAIAFTGL--QAGREWRFVDG-GRPVAVPVAPRLVVNDALAALDAAEAGDGITLALS 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+V + LV ++ P V +P A K++AF +F Sbjct: 242 YMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287 >gi|118589549|ref|ZP_01546954.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] gi|118437635|gb|EAV44271.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] Length = 290 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 130/247 (52%), Gaps = 9/247 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V G F+HAA QL ++QS++S+ IS LET +G +LF R R L LT +G + Sbjct: 1 MEVFVQVVELGGFSHAARQLAMTQSAVSKLISRLETRLGARLFNRSTRRLDLTAEGCVFY 60 Query: 68 RVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ ++ Q L E +P G++R+ T+ ++L+ L FL YPDI ++ Sbjct: 61 ERAREILSSIDEAERQAGLGE---QPVGRIRLNTSASYATHILERVLPLFLEQYPDISLE 117 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L + ID+ + D +R P++ SSL+ RKL M A+P YL+ EP + + Sbjct: 118 IVLTDALIDLLAERTDVVVRA-GPLKDSSLVARKLGETPMLIVASPDYLRRAGEPSCVAD 176 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H I F P+ ++ + +L D PI +Q + +I + + G G+A L Sbjct: 177 LAGHRKIGF--TYPREVDTWRFLRN-DEPIAVCPPGRVQASDGEAIRRLAIHGLGLARLA 233 Query: 246 DYIVKDN 252 + V+D+ Sbjct: 234 AFTVRDD 240 >gi|254449935|ref|ZP_05063372.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198264341|gb|EDY88611.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 301 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLGEFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ S+L RKL A+P Y + +P I +L Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSRRMVASPGYFEQYGQPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W + P GE R L VN S++ + G GIA Sbjct: 185 NDHKLLHYSNQSNSAV----W--KLKAPSGEKRQVRTAGWLTVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D +V + D+ + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYADALAKGLVVEAIPDLPVDTQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|163732608|ref|ZP_02140053.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] gi|161393968|gb|EDQ18292.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] Length = 301 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F +V G FT AA++L +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFAMVVDQGGFTDAAKKLGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSEFLSDFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPEKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 185 NAHKLLHYSNQSSGNV----WKITA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D LV + D+ + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYADAMEKGLVEDAIPDLPMETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|170701185|ref|ZP_02892156.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133891|gb|EDT02248.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 305 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AAE LH+S++++++ + LE + ++L R R + +T G Sbjct: 4 FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTPDGI 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + L +S P G+LR+ + +L L FL YPDIQ+ Sbjct: 64 AYYERVTRLLADMDDVETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +DI + DC +R +P S++ R++ + + A+P YL P Sbjct: 124 DMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPSHPA 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G L P M V G ++ N+YL+ V Sbjct: 183 ELENSHHRIVGFSWGRAGKLYPLVMHRNGETVAVQ---GRYALAVDDGNAYLAA---GVA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ K + LV + +D +Y YP + KL+AF +++ Sbjct: 237 GLGIMWLPQYMAKAHLERGELVTLFDDWQLDPMPLYIAYPPNRHVSAKLRAFIDWV 292 >gi|306844815|ref|ZP_07477400.1| LysR family transcriptional regulator [Brucella sp. BO1] gi|306274987|gb|EFM56757.1| LysR family transcriptional regulator [Brucella sp. BO1] Length = 293 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P S Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I + +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIARADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|294142101|ref|YP_003558079.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293328570|dbj|BAJ03301.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 289 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 140/276 (50%), Gaps = 11/276 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT AA++L +S + +SRQ+S LET + KLF+R R +++TE Sbjct: 2 FNWEGISEFVAVAETESFTQAAKRLGISTAQVSRQVSALETRLATKLFHRTTRKVSVTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +V LE + + P G+L+I + G+ L + +F+ YP++ Sbjct: 62 GQVYFQHCRQVLDGLEEAERAITNLQSTPRGRLKITAPVTYGERTLAPLINDFITKYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++QL L N +D+ + D AIRL + ++ S+++ ++L + AAP YL P S Sbjct: 122 EVQLNLTNLRVDLIDEGYDLAIRLGQ-LEDSTMMAKRLGKRTHYVCAAPSYLSTYGIPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL++HN + G L D+ + + L NS +++ V GI Sbjct: 181 LSELEQHNCL-LGTL------DYWRFQDKGKAVNIRVRGNLNCNSGRALVDAAVKAIGIT 233 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPE 275 LPDY V ++ LV I+E ++ YP+ Sbjct: 234 HLPDYYVLPYLESGELVSILEQHRPFDDGIWAVYPQ 269 >gi|319945066|ref|ZP_08019328.1| contact-regulated protein A [Lautropia mirabilis ATCC 51599] gi|319741636|gb|EFV94061.1| contact-regulated protein A [Lautropia mirabilis ATCC 51599] Length = 299 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 145/298 (48%), Gaps = 14/298 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L VF V SGSF+ AAE L L+ S +SR + LE ++ L R R L LTE+GS+ Sbjct: 6 DELAVFVQVVESGSFSRAAESLGLANSVVSRTVKRLEEKLSTNLLNRTTRQLRLTEEGSR 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R ++ H ++ + EL S P G LR+ + + + ++ F YP + +Q Sbjct: 66 FFRRARQILHDIDAAEAELLSSGGTPQGILRVDSATPTLLHRIAPLVRPFRERYPKVSLQ 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ID+ D AIR + S+L R L + AAP YL P S+ + Sbjct: 126 LTSSEGYIDLIERRVDIAIRA-GSLHDSALRARHLFDSRLKLVAAPDYLARYGTPESVAD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H LI F + P+ + ++ + + P P++S NS +I Q C+ G+GIA L Sbjct: 185 LSRHVLIGFSE--PRTLNNWPFADSGHAPYAAAPQLSA---NSGETIRQLCLSGNGIACL 239 Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 D++V + +L ++ D + + + Y + K++AF +F+ A W+ Sbjct: 240 SDFVVASDIAAGDLHELLPDRALNEAKPFHAVYYGDTTVSPKIRAFVDFL---AEHWR 294 >gi|70731392|ref|YP_261133.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345691|gb|AAY93297.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 296 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 146/297 (49%), Gaps = 16/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA SF+ AA L S +++S+Q+ LE +G L R R ++L+E G + Sbjct: 7 MRTFRRVAERSSFSQAATDLGQSTAAVSKQVRQLEERLGSLLILRTTRRMSLSEAGQRYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + Q +P G+LR+ + G +L L F+ YP +Q+ L Sbjct: 67 SECCHLLDELDALERATQAGLHEPGGRLRVNAPLSFGLKVLSPILVAFMQRYPQLQVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D ++R+R+ ++ SSLI R+L + AAP YL+ P SI +L Sbjct: 127 LNDQVLDVVGEGFDVSLRIRRQLEDSSLIARQLGQVEQIICAAPAYLQAAGTPASIADLH 186 Query: 188 KHNLITFGDLIPKCMED-FNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H + + + E W + P G+ R+ ++ L + V G GI Sbjct: 187 QHRCLAY-----RLAEHPGRW--HLQGPEGQTRLELPVHFSADNSLLLADMLVAGLGIGA 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295 LP ++ + D+ L+R++ D P +Y YP + K++ F +F+ L+AR Sbjct: 240 LPGFVAQPLLDSGQLLRVLPDQHLPGRHIYALYPSQRHLSQKVRVFVDFLVEALQAR 296 >gi|238794799|ref|ZP_04638401.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC 29909] gi|238725879|gb|EEQ17431.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC 29909] Length = 302 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 137/290 (47%), Gaps = 18/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AAE L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFARVAECGSFTRAAEMAGLPKSSVSQRISQLEQNLGIRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG LL +F YPD+ ++++ Sbjct: 68 VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLLEVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + D A+R KP Q SSLI R+L + A+P YL ++LD Sbjct: 128 VSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLTHPRQLD 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243 H +C+ W A + R E ++ L V L + C L G GI L Sbjct: 187 TH----------RCIAHRAWQALILRREDEFYRWQVPALHVTDNLLYARECALAGGGITL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ ++ N LV ++ +Y YP N+ L F + + Sbjct: 237 LPAFLSREVVANRQLVEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVV 286 >gi|239503615|ref|ZP_04662925.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|260555441|ref|ZP_05827662.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC 19606] gi|260411983|gb|EEX05280.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC 19606] Length = 303 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/280 (25%), Positives = 146/280 (52%), Gaps = 11/280 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V +GSF AAEQLHL++S+IS+ I+ LE ++G+ LF R R L++T Sbjct: 1 MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVVLFKRTTRSLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + + +++ L + + +G+LRI+ + GQ + +F + Sbjct: 61 DEGTLFYEHSRRALSEIQNAAALLDQRKINATGRLRISVPVLFGQLFAAPLMVKFAHQHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+++ +++++D+ + D IR+ ++ L+ + + M A+P YL Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 I++LD+H I FG M+ + D P + L +N +I + Sbjct: 181 EHIEDLDQHATIADPHFGQ-----MQKWRLQKENDEPFFIKPKAKLLLNDLQAIKNAALA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G+GIA LPD+++++ + LV++++ + + +F ++ +P Sbjct: 236 GAGIAWLPDWLIQNELQDGKLVQVLDTMSSTAFPIHLVWP 275 >gi|167554230|ref|ZP_02347971.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321518|gb|EDZ09357.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 304 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I C + NS ++ Q C+ G Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IECGISSNSGETLKQLCLSG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|119773541|ref|YP_926281.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B] gi|119766041|gb|ABL98611.1| transcriptional regulator, LysR family [Shewanella amazonensis SB2B] Length = 313 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 140/296 (47%), Gaps = 15/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA L ++++++SR+++ LE G++L +R R L LTE Sbjct: 1 MDLNRVQIFAAVVEHGSFTAAATALGITKATVSRKVAELEENAGVQLLFRTTRALKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + S V +L+ + +L S GKL+I I+LGQ L L FL YPDI Sbjct: 61 GSNYYHRVSRVLSELQQAETQLSASQQNIRGKLKIVCPIELGQLFLGSILARFLKQYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI L N+ +D+ + D ++ +P + L +V A+P YL P + Sbjct: 121 QINTELTNRRVDVIEEDIDMLFQIAEP-KDPRLTCHAMVKADKMLLASPEYLAQFGTPKT 179 Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L H I D + K + W + EP ++ L VN+ + + G Sbjct: 180 PADLAHHRAIRLVSAHIDGVWKIFDGKQW------QVYEP-VAQLTVNNVTLAREAAIEG 232 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA +P I + + LV ++ED + YP++ + + F FI+ Sbjct: 233 LGIATVPTLIASEALASGKLVPVLEDYPMHQAKITLSYPQSAYLPRRYRVFIAFIY 288 >gi|332525731|ref|ZP_08401879.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109289|gb|EGJ10212.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 299 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 132/270 (48%), Gaps = 7/270 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F +AR+G T AA QL + S++SR+ISGLE +G LF R G T + Sbjct: 4 FDWNDLRAFLAMARTGRLTVAARQLGVDHSTLSRRISGLEAALGTPLFDRRPAGFVPTPE 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + L ++ + SG +R+ + G L L +P + Sbjct: 64 GERLLPDAEAMEAMALRLTGRLADAGQQLSGSVRVGSPEGFGTYFLGPRLATLATRHPQL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + +S AD AI + +P Q + KLV + YA+P YL+ R Sbjct: 124 ELELVAMPRSFSLSKREADLAITMTRPAQ-GRVYAHKLVDYALGLYASPQYLQGRRAIRQ 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H I + + + E+ ++L V R + + L++++ +S M G+G+ Sbjct: 183 REDLTSHRWIGYVEEL-MWTEELDYLPQVQRGL----VPQLRISNVISQMMALAGGAGLG 237 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272 +LP ++ + P LV+++ D + Y+C Sbjct: 238 VLPHFMARQQPGLVQVLADKVR-LVRSYWC 266 >gi|157369150|ref|YP_001477139.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157320914|gb|ABV40011.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 295 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V SGSF+ AAEQL + S +SR + LE ++G+ L R R ++LT Sbjct: 1 MKANSDELITFVTVVESGSFSRAAEQLDQANSVVSRTVKKLEAKLGVTLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R +V + + L ES +P G LR+ + ++L + EF LYP Sbjct: 61 QEGENYFRQVQKVLSDMAAAENALMESRQRPQGLLRVDAATPVVLHVLTPLVAEFRALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR+ + + SSL RKL+T + A+P YL P Sbjct: 121 EMSLSLVSSENFINLIERKVDIAIRVGE-LTDSSLKARKLMTSYRRVLASPAYLAQYGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++EL++H+ I F DL P W LA D E L NS + C+ G+ Sbjct: 180 QKVEELEQHSCIGFNDL-PSLNR---WPLACADGRQLEI-TPGLTTNSGETQRHLCLHGN 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L ++++ + P LV V P VY+ A+ N +L++F +FI Sbjct: 235 GIACLSNFMIDADIERGDLVPILVEETLPVAMPVNAVYYS-DSAVSN--RLRSFIDFI 289 >gi|269962763|ref|ZP_06177105.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832518|gb|EEZ86635.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 300 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 8/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA Q+ L++S +S++I+ LE E+G++L YR R L LTE G Sbjct: 5 DDYIIFYHLVEQGSFSAAARQMELTKSVVSKRIAKLEQEIGVQLLYRTTRTLKLTEAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 VY + T + + SG ++I G+ +L + EF YPDI I Sbjct: 65 FFEHARSVYQAVATAEESIVGLGKSLSGNIKITVPTISGELILPTVISEFNQAYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ DI + D AIR + SSLI RKLV + A+P ++ +P + + Sbjct: 125 MELDNRFADIVNEGFDLAIRT-GVLPDSSLIARKLVDANWIVCASPRFVAKHGKPKTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L KHN + + E W D + + ++ L N+ ++ +LG GI + Sbjct: 184 LTKHNCLVYAYQETGACE---WAFKRDDEVYQVKVDGNLCTNNSSALRNVALLGQGIIYV 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V ++ L+++ +D +Y YP + K+K F Sbjct: 241 PRVLVYEDLQQGKLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIF 285 >gi|238797536|ref|ZP_04641034.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC 43969] gi|238718677|gb|EEQ10495.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC 43969] Length = 302 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 138/287 (48%), Gaps = 20/287 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AAE L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFARVAECGSFTRAAEMADLPKSSVSKRISQLEQNLGIRLINRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG L+ +F YPD+ ++++ Sbjct: 68 VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLVARLATDFQRQYPDVLLEVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186 + +D+ + D A+R KP Q SSLI R+L + A+P+YL PLS +L Sbjct: 128 ASDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPNYLAQ-HPPLSHPSQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIA 242 DKH+ C+ W A + R GE ++ V L + C L G GI Sbjct: 186 DKHH----------CIAHRAWQALILRCEGEFYRWQVPMQHVTDNLLYARECALAGGGIT 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LLP ++ ++ N L+ ++ +Y YP N+ L F Sbjct: 236 LLPAFLSREVVANRQLIEVLPQWRPEGNELYLVYPSRKLNSPALSCF 282 >gi|291616377|ref|YP_003519119.1| YafC [Pantoea ananatis LMG 20103] gi|291151407|gb|ADD75991.1| YafC [Pantoea ananatis LMG 20103] Length = 312 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+VF V SGSF+ AAE L ++ S++SR I LET++G+ L R R L LT Sbjct: 1 MKASSEELKVFVSVVESGSFSRAAETLEMANSAVSRTIKKLETKLGLALLTRTTRNLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + + + + EL ES P G LRI + +L+ +K F YP Sbjct: 61 QEGERYFQQVQHFLQVMTAAENELIESRDVPKGLLRIDAATPVILHLIMPMIKSFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI + LI I++ D AIR + S L R L + A+P YLK P Sbjct: 121 DIALSLISSENFINLIERKVDVAIRA-GSLTDSGLRARLLFISYRRLIASPDYLKKHGIP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +LD H + F D P+ W + S L NS +I Q C+ G+G Sbjct: 180 LRAADLDNHQCLGFID-APRLN---RWPVACEGGELYGIRSELDSNSGETIKQLCLEGNG 235 Query: 241 IALLPDYIVK---DNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA L DY+V + +LV IM D V P VY+ L T +++AF +F+ Sbjct: 236 IACLSDYMVHKEIEEGSLVEIMADQRLPVEMPFNAVYYS---DLGVTQRVRAFIDFL 289 >gi|163751657|ref|ZP_02158877.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] gi|161328483|gb|EDP99638.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] Length = 289 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 152/292 (52%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT A+++L +S + +SRQ+S LET + KLF+R R +++TE Sbjct: 2 FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + + P G L+I + G+ L + +F+ YP++ Sbjct: 62 GKIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEGTLAPLINDFIAKYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I++ L N+ +D+ + D A+RL + ++ SS++ ++L + ++ A+P YL P S Sbjct: 122 EIKITLTNQKLDLIDEGFDLAVRLGQ-LEDSSMMAKRLGSRTIYVCASPDYLSKYGLPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + EL++HN + G L D+ W + R+ L NS +++ + GI Sbjct: 181 LSELEQHNCLQ-GTL------DY-WRFQENGKTRNIRVRGNLTCNSGHALVDAAIKSIGI 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V ++ LV I+E P ++ YP + K++ +++ Sbjct: 233 VQLPDYYVLPFIESGQLVPILEHNRQPDEGIWALYPHNRHLSPKVRMLLDYL 284 >gi|126659789|ref|ZP_01730916.1| transcriptional regulator [Cyanothece sp. CCY0110] gi|126618941|gb|EAZ89683.1| transcriptional regulator [Cyanothece sp. CCY0110] Length = 289 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 137/286 (47%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V GSF AA ++ LS+S++++ + LE +G++L YR R +T T G + Sbjct: 1 MRAFTYVIEEGSFAAAARKMKLSRSAVNKLVINLENYLGVQLLYRTTRQVTPTATGQAFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ LE ++ + + +P G L+I + G L + +F+ Y I+IQL Sbjct: 61 ERCLEILSNLEEAELAVSQQQNEPLGSLKINAPMSFGITRLGTIIAKFMTRYSKIKIQLT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ ID + D IR+ P QS +L RK+ TI A+PHYLK P I EL Sbjct: 121 LEDRFIDPISEGYDLVIRIGSPPQSPNLFVRKITTIARVICASPHYLKTNGIPEKISELK 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H+ + +G L+ F + + E N+ + + G GI +LPD+ Sbjct: 181 QHSCLHYGYLLSGTQWQFIYQGKQENITIEGSFCS---NNGEVLRDAALQGLGIVILPDF 237 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IV ++ +L I+ P + YP + K+K F F+ Sbjct: 238 IVNQYLESGDLQIILSSYKIPELDLSIIYPINRHLSTKIKLFIEFL 283 >gi|114769755|ref|ZP_01447365.1| transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] gi|114549460|gb|EAU52342.1| transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] gi|161170251|gb|ABX59221.1| transcriptional regulator [uncultured marine bacterium EB000_55B11] gi|297183780|gb|ADI19903.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 303 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 143/292 (48%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SG FT AA +L LS+SS+S+ I+ LE+ +G+ L R R ++ TE G Sbjct: 6 EMEIFVAVVDSGGFTEAANKLRLSKSSVSKHIASLESRLGVTLLNRTTRNVSATEIGINY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ + ++ + G LR++ + D G N L + F+ YP I+I + Sbjct: 66 YQKCIKFLEEIQDADLSVKAMQTEAQGILRVSVSNDFGSNHLINCITPFIKAYPKIKIHM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + SS+ +K+ + + YL + P I +L Sbjct: 126 TLDNRFVDLVSEGFDLAVRIGN-LSDSSMKAKKIANTKLAIVGSRDYLASNGIPKKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 H L+ + E N + P GE R L VN S++ G G+A Sbjct: 185 SDHQLLNY------SFEKSNNFWRIPGPDGEERQIRGKDNLSVNDGKSLLMAAEAGLGLA 238 Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +I +KD +L +I+ ++ P VY YP + KL+ F +++ Sbjct: 239 YLPCFIYGEKIKDG-SLQKILTNIKFPELGVYAVYPSSDYIPPKLRVFIDYL 289 >gi|160873499|ref|YP_001552815.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|160859021|gb|ABX47555.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|315265728|gb|ADT92581.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 299 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 144/299 (48%), Gaps = 15/299 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A+++L LS+S++S++I+ LE +GI+L +R R L+LTE G+ Sbjct: 4 FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + E P G LRIA + G+ + + EFL YP IQ+ Sbjct: 64 RYFDYVRPAVKLAEEGLDAISELQQAPQGSLRIAAPMVFGRLHIAPLIPEFLRRYPKIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RK+ A+P YL P + Q Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHAAPQTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L +HN + + + W T P G RI QVN+ +I Q + G GI Sbjct: 183 QLSQHNCLFYSYF----RDGVEW--TFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 A LP ++V + R ++ D P +Y YP+ K+ F+ FL R Sbjct: 237 ANLPRFMVDTDLQAGRLQALLADHPLPEHGIYAVYPQRKHLPTKVNVLIEFLIEFLAKR 295 >gi|172064818|ref|YP_001815530.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997060|gb|ACB67977.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 305 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 140/292 (47%), Gaps = 10/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA +S +++SR ++ LE+ +G +LF R +R L+LTE G Sbjct: 6 DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLESRLGARLFNRTSRQLSLTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + EVY + E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 RTISEQAGEVYRRAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D A+R+ + SSL+ R+L + A+P YL+ P Sbjct: 126 IDLHLSDASVDLIAEGFDAALRI-AALPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241 +EL +++ + W T D EP + L+V + +++ + G I Sbjct: 185 RELADRPCLSYAYRARSAV----WRFTNDVGDEEPVMPTGPLRVTNSDALLPTLLDGLAI 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LP++I + + L I+ D +YF P A K+ A ++ Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVTALSDYF 292 >gi|317402162|gb|EFV82753.1| LysR family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 310 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 145/283 (51%), Gaps = 9/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ + V GSF AA+++ ++S ++RQI+ LE + G++L R R L++T+ G + Sbjct: 7 MQTYVRVVELGSFAAAADKMGQARSVVTRQIAFLEEKYGVRLLNRTTRKLSMTDAGRAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ LQ PSG+LRI+ + G L + E+LL YPD+ I L Sbjct: 67 ERVRPILAEVTDLELSLQAEGQAPSGRLRISAPVSFGILHLGPAIAEYLLRYPDVVIDLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ D D A+R+ P+Q SSL+ R L + AAP YL++ PL ++L Sbjct: 127 LNDRVVDLVEDGYDVAVRI-GPLQDSSLVARPLAPQQLLVCAAPAYLESHGVPLVPEDLK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + W D R+ + L+ N+ + + G G+ L P+ Sbjct: 186 QHRCLHYA----YASTGNEWHFEKDGVSHLVRVNAALRANNGDVLRTAALAGHGVILQPE 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++V D+ LV +++D + ++Y YP + K+++F Sbjct: 242 FLVGDDVRAGRLVALLQDYVHTPISMYAAYPHRRFLSPKVRSF 284 >gi|241765517|ref|ZP_04763480.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241364701|gb|EER59720.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 308 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++++++ + LE + ++L R R L LT G+ Sbjct: 4 FDAMQAFARVVEAGSFTKAAHTLHMSRTTVTQLVQQLEARLRVRLLNRTTRRLHLTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L + L +S P G+LR+ L + +L L F YPDIQ+ Sbjct: 64 AYYERVVRLLADLHDAETSLSAASAVPRGRLRVDVPSPLARTVLIPALPAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R I SLI R + + + +AAP YL+ PL Q Sbjct: 124 DMGVSDRKVDMVGEGVDCVLR-GGAITDPSLIARHVGDLQLQVFAAPAYLQRAGTPLHPQ 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L+K H ++ F G +P + + V E R C V+ + + + Sbjct: 183 ALEKTHHRIVGFLWERTGRPLPYALRRGSERVRV-----EGRYVC-AVDDGNAYVAAGLA 236 Query: 238 GSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ ++ + LV + ED +Y YP + KL+ F +++ Sbjct: 237 GMGILCLPDYLSAPLRASGELVPLFEDWHFDPLPLYLAYPPNRHVSAKLRVFMDWV 292 >gi|85712422|ref|ZP_01043471.1| Transcriptional regulator, LysR family protein [Idiomarina baltica OS145] gi|85693700|gb|EAQ31649.1| Transcriptional regulator, LysR family protein [Idiomarina baltica OS145] Length = 292 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 143/300 (47%), Gaps = 21/300 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + F VA++ SFT AA+QL LS + +SR I+ LE + + L YR R ++LTE+GS Sbjct: 4 WQGISEFVAVAQTSSFTSAAKQLGLSVAQVSRNIAALEQRLKLPLLYRSTRSVSLTEEGS 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + L +Q+ S KP G +R+ + G++++ + +FL YPD ++ Sbjct: 64 LYLPHCQHLVASLNDADQAIQQRSEKPQGLIRLTAPVFYGEHVIAPLVNDFLNQYPDCRL 123 Query: 125 QLILDNKDIDISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 L N +D+ + D AIRL +++S L +R+ + AP Y + EP Sbjct: 124 DFNLTNDTLDLIEGHYDLAIRLGHLGTPRLKASPLGRRRHFLV-----GAPAYFERFGEP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGS 239 + L H +T G L +W VD + + + L NS L+I G Sbjct: 179 THLASLADHRCLT-GTLK-------SWRFQVDGKVKTVQPNALVHCNSGLAIKDAVCKGL 230 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GIA+LPDY V D L +M + P ++ YPE+ K++ +F+ +K D Sbjct: 231 GIAILPDYYVADELEAGVLQEVMTEYRQPDDGIWALYPESRHRIAKVRVLIDFLKVKLTD 290 >gi|84515733|ref|ZP_01003094.1| transcriptional regulator, LysR family [Loktanella vestfoldensis SKA53] gi|84510175|gb|EAQ06631.1| transcriptional regulator, LysR family [Loktanella vestfoldensis SKA53] Length = 301 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKRMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L FL YPDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQTAPSGLLRISVATDFGVNHLSQVLGAFLGAYPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L KL A+P Y P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRAHKLTETTRRMIASPGYFTQYGRPNKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R L VN S++ C+ G GIA Sbjct: 185 NNHKLLHYSNQSNSAV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNACIGGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D + E D+ + ++ YP+ K++AF +F+ Sbjct: 239 YLPSFLYADAMRKGLVAEAIPDLPIETQGIFAVYPQGHFTQPKVRAFVDFL 289 >gi|254237054|ref|ZP_04930377.1| hypothetical protein PACG_03086 [Pseudomonas aeruginosa C3719] gi|126168985|gb|EAZ54496.1| hypothetical protein PACG_03086 [Pseudomonas aeruginosa C3719] Length = 307 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S+++ + LE + ++L R R L LT G+ Sbjct: 4 FDAMQAFARVVDTGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L+ + L +++ P G+LRI L + LL L EF YP+IQI Sbjct: 64 AYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPEIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC IR + ++ SL+ R++ + + YAAP YL+ P + Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182 Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL D H I G +P M V G ++ N+YL+ + Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMRRGGECLRV---AGRHVLAVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ ++ L+ + ED +Y +P +GKL+ F ++ Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292 >gi|77361138|ref|YP_340713.1| transcriptional regulator LysR [Pseudoalteromonas haloplanktis TAC125] gi|76876049|emb|CAI87271.1| putative transcriptional regulator LysR family [Pseudoalteromonas haloplanktis TAC125] Length = 288 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 148/292 (50%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 W+ + F VA + SFT A++++ +S + +SRQIS LE + +KLFYR R ++LTE+ Sbjct: 1 MQWEGISEFVHVAENASFTQASKKMAISTAQVSRQISALENRLNVKLFYRTTRKVSLTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ V L+ + + P GK+++ ++ G+ + + +F+L Y ++ Sbjct: 61 GRVFYQHCRSVLDGLDAAERAITNLQTTPQGKIKLTASVTYGEQQVLPLVSDFMLQYSEV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L N+ ID+ D AIR+ K + SS++ +KL T + A+P YL+ P + Sbjct: 121 AVSAYLSNQQIDLVEGGYDLAIRIGK-LADSSMMAKKLGTRTSYVCASPEYLEKHGIPHA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 I EL KH+ + G L D+ W R++ L+ NS S+ + G GI Sbjct: 180 ISELSKHSCL-LGTL------DY-WHFMESGKEKNIRVAGKLRYNSGYSLADAALKGLGI 231 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V++ + L+ +++ P ++ YP + K++ +++ Sbjct: 232 VQLPDYYVQNHLQSGELITLLDSYRVPDEGIWAIYPHNRHLSPKIRLLVDYL 283 >gi|254466186|ref|ZP_05079597.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] gi|206687094|gb|EDZ47576.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] Length = 297 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 23/305 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G + Sbjct: 1 MEAFANVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + PSG LRI+ D G N L L +FL +PDI + ++ Sbjct: 61 DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNMV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ +++ + D A+R+ + ++ SSL RKL A+P YL+ P I EL+ Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRPQKIDELN 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 180 NHKLLHYSSQSSGNV----WKITA--PSGEKRQVRTSGWLSVNDGQSLLTAAISGLGIAY 233 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLKARD-- 296 LP Y+ + ++EDV+ PS V Y YP K++AF +F+ D Sbjct: 234 LPSYLYAEAME-EGLVEDVM-PSLPVETQGIYAVYPPGKFTQPKVRAFIDFLVAAFADRD 291 Query: 297 ---WK 298 WK Sbjct: 292 PSEWK 296 >gi|239820048|ref|YP_002947233.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] gi|239804901|gb|ACS21967.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 303 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 9/292 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F VA SGSF+ A+ L LS+ ++S+ I+ LE G++L R R ++LT+ G Sbjct: 5 DLLRTFSEVASSGSFSRTAKHLALSRGTVSKYIAALEHRFGVRLLNRTNRAVSLTDAGLL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + T+ ELQ+ + PSG+LR++ + L + +FL YP++ I Sbjct: 65 LLDRSRPILELADVTRAELQDRARVPSGRLRVSAPHGMDLTQLPALINDFLGHYPEVSIS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L N+ +D++ + D A+R P + +LI RKL+ + + AAP Y + P E Sbjct: 125 LVLSNRLVDLTEEGVDIALRF-APSANENLIVRKLMPMALSVCAAPMYWRKHGVPAHPDE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + L P W DR PI L ++Q +LG+G+ L Sbjct: 184 LAHHAALISTQLNPLP----KWRFEADRQPIEVAVRGRLDATEASPLIQAALLGAGVVYL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 P +++ ++ LV ++ + + Y + +T +AF +F+ ++ Sbjct: 240 PSVMLEPYIESGRLVPVLPTFVRSDMWLSAVYLQRRHSTAVQRAFLDFLAVR 291 >gi|197251911|ref|YP_002145256.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215614|gb|ACH53011.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 304 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I C + NS ++ Q C+ G Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IKCGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIAWGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|91223611|ref|ZP_01258876.1| AphB/LysR family protein [Vibrio alginolyticus 12G01] gi|91191697|gb|EAS77961.1| AphB/LysR family protein [Vibrio alginolyticus 12G01] Length = 291 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L T E+ + SGK++I+ +L + ++ F+ YPDI I+ Sbjct: 64 FYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +N + D R+ P + SSLI RK+ + A+P YL + P +E Sbjct: 124 LTTENNADKLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLTSNPAPHHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LSNHSLLKGYPLIKWTLINSKGESVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K ++ +LVRI+ D +Y Y K++ F +F+ Sbjct: 238 DVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|207727996|ref|YP_002256390.1| hypothetical protein RSMK04389 [Ralstonia solanacearum MolK2] gi|206591240|emb|CAQ56852.1| hypothetical protein RSMK04389 [Ralstonia solanacearum MolK2] Length = 305 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 21/286 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L +F V +GSFT AA +L L +SS+SR I+ LE ++ ++L R R L LT+ Sbjct: 1 MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++V S +E E P GK+R+ D+G+ L+ + F+ YPDI Sbjct: 61 GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L +++D+ + D A+R+ + + SSL+ R L + + +A+P YL+ P + Sbjct: 121 DLDMVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGVPQA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 +++L H+ + F + W R +G + + V + L+ L Sbjct: 180 VRDLGHHSCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231 Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 G+GI LP Y + + N P LVR++ D T + P A Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPDYATSGEPLNLVTPTA 277 >gi|254228478|ref|ZP_04921904.1| transcriptional regulator [Vibrio sp. Ex25] gi|262393653|ref|YP_003285507.1| putative LysR family transcriptional regulator [Vibrio sp. Ex25] gi|151939066|gb|EDN57898.1| transcriptional regulator [Vibrio sp. Ex25] gi|262337247|gb|ACY51042.1| putative transcriptional regulator LysR family [Vibrio sp. Ex25] Length = 291 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L T E+ + SGK++I+ +L + ++ F+ YPDI I+ Sbjct: 64 FYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +N + D R+ P + SSLI RK+ + A+P YL + P +E Sbjct: 124 LTTENNADKLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLASNPAPNHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LSNHSLLKGYPLIKWTLINSKGESVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K ++ +LVRI+ D +Y Y K++ F +F+ Sbjct: 238 DVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|120598650|ref|YP_963224.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1] gi|120558743|gb|ABM24670.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1] Length = 292 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 151/296 (51%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + SFT AA++L++S + +SRQ+S LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ +P ++ Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL++HN + + + N+ V+ G R L NS ++ + G G Sbjct: 183 ELNQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++++ R++ + T ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEEDIQAGRLLSFLDTHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287 >gi|62178822|ref|YP_215239.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126455|gb|AAX64158.1| putative transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713273|gb|EFZ04844.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 304 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I C + NS ++ Q C+ G Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IECGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKAIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|254295197|ref|YP_003061220.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043728|gb|ACT60523.1| transcriptional regulator, LysR family [Hirschia baltica ATCC 49814] Length = 302 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F SGSFT AA+QL L++S+ISR+I LE + +L R R +TLTEQG Sbjct: 4 YEDIEAFVRTIESGSFTAAAKQLGLAKSAISRRIQDLEARLDTQLIIRTTRKITLTEQGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + H + + + + +G +R+ + G N L EFL P+I++ Sbjct: 64 TLFERAKILLHDWQEAEASITSNQAALAGTIRVTAPLTFGVNHLSAAFIEFLDANPNIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + D AIR+ + + SSLI RKL I A A+P YL P + + Sbjct: 124 DIDFSDRKVDLVSEGMDLAIRIGQ-LPDSSLIARKLAPIRAIAAASPEYLAKNGTPRTPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDF-NWLATV-DRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 +L K N + +G ++D +W T D +GE + S L+ + + + G G+ Sbjct: 183 DLQKLNELRYG------LKDVRSWKYTAPDGSVGEIEMPSVLKSTNGDFLKDAAIAGKGV 236 Query: 242 ALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYP 274 + P +I +KD LV+I+ D P Y YP Sbjct: 237 VIEPSFILCQALKDG-RLVQILPDYKWPEIGAYAIYP 272 >gi|322614536|gb|EFY11465.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620054|gb|EFY16926.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623349|gb|EFY20188.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629353|gb|EFY26132.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632073|gb|EFY28827.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637189|gb|EFY33891.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640302|gb|EFY36962.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645931|gb|EFY42451.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650083|gb|EFY46499.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652574|gb|EFY48924.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660384|gb|EFY56620.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664537|gb|EFY60730.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669410|gb|EFY65560.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670956|gb|EFY67089.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678805|gb|EFY74860.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681834|gb|EFY77859.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687960|gb|EFY83926.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194314|gb|EFZ79509.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197730|gb|EFZ82862.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203474|gb|EFZ88499.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206781|gb|EFZ91734.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213400|gb|EFZ98201.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214693|gb|EFZ99444.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221454|gb|EGA05870.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226228|gb|EGA10444.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229984|gb|EGA14104.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233723|gb|EGA17812.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238583|gb|EGA22641.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244271|gb|EGA28280.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246575|gb|EGA30550.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252185|gb|EGA36038.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258054|gb|EGA41733.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259848|gb|EGA43479.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265137|gb|EGA48636.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272700|gb|EGA56107.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 304 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 S++EL +H + F + P + W +A D + E + C + NS ++ Q C+ G Sbjct: 180 ESVEELKRHLCLGFSE--PVSLN--TWPIACRDGQLHE--VECGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|168819172|ref|ZP_02831172.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344112|gb|EDZ30876.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084505|emb|CBY94297.1| probable RuBisCO transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 304 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 S++EL +H + F + I N W +A D + E I C + NS ++ Q C+ Sbjct: 180 ESVEELKRHLCLGFSEPI-----SLNTWPIACSDGQLHE--IKCGISSNSGETLKQLCLN 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|331005724|ref|ZP_08329086.1| transcriptional regulator, LysR family [gamma proteobacterium IMCC1989] gi|330420477|gb|EGG94781.1| transcriptional regulator, LysR family [gamma proteobacterium IMCC1989] Length = 297 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 9/293 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GSF+ A L +S S++SRQIS LE E+G +LF R R +LTE G Sbjct: 7 IELFVKVVEEGSFSAVARSLGISPSAVSRQISQLEKELGGRLFQRTTRKQSLTEAGEVYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +E ++ ++ + KPSG LRI D ++ L +FL LYP++QI L Sbjct: 67 QHALQLVEDIEVAKLAVRGLTDKPSGNLRITAEADFALAFIEPILPDFLALYPEVQICLH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ + D AIR+ ++ SSL RKL A+P YLK EP ++L Sbjct: 127 MSSNLQDLIDNNLDLAIRVGH-LRDSSLTARKLADSTSVVCASPAYLKKYGEPTHPRDLK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ ++F + ++ +PI P L VNS + + + G GI L+P + Sbjct: 186 SHSCLSFNT---QLGSNYWRFEAEQKPITVPVSGRLNVNSVSFLRKAALNGLGIILIPTW 242 Query: 248 IVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +++D +L+ +++D +I S + + + K +A NF+ + R Sbjct: 243 VIRDELTQQHLIPVLQDFPLIPHSTPINAIFTHKRQLAPKTRALINFLSERIR 295 >gi|184157691|ref|YP_001846030.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332876376|ref|ZP_08444145.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|183209285|gb|ACC56683.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|322507998|gb|ADX03452.1| Transcriptional regulator LysR family [Acinetobacter baumannii 1656-2] gi|323517586|gb|ADX91967.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735386|gb|EGJ66444.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 301 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 150/281 (53%), Gaps = 13/281 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V +GSF AAEQLHL++S+IS+ I+ LE ++G+ LF R R L++T Sbjct: 1 MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVALFKRTTRSLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + + +++ L + + +G+LR++ + GQ + +F + Sbjct: 61 DEGTLFYEHSRRTLSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+++ +++++D+ + D IR+ ++ L+ + + M A+P YL N R P Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYL-NKRGP 179 Query: 181 LS-IQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + I++LD+H I FG M+ + D P+ + L +N +I + Sbjct: 180 VEHIEDLDQHATIADPHFGQ-----MQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAAL 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 +GIA LPD+++++ + LV+++E + + +F ++ +P Sbjct: 235 ADAGIAWLPDWLIQNELQDGKLVQVLETMSSTAFPIHLVWP 275 >gi|163748651|ref|ZP_02155904.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] gi|161331761|gb|EDQ02565.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] Length = 314 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 141/293 (48%), Gaps = 9/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L L+++++SR+I+ LE + G++L +R R L LTE Sbjct: 1 MDLNRVQMFDQVVEQGSFTAAAKALGLTKATVSRKIAELEADAGVQLLFRTTRKLKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + L+ +++L S GKLRI I+LGQ L FL YPDI Sbjct: 61 GSAYYNRVHRILADLKQAEVQLSASQEVIKGKLRIVCPIELGQLFLGKVFARFLGRYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ L N+ +D+ + D ++ + L L+ A+P YL P + Sbjct: 121 SIEAELSNRKVDMIAEDVDILFQITS-TTDTRLQSYDLLNTTKTLMASPEYLTRYGTPQT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q+L++H I + D +W L D+ + + L VN+ + + G GI Sbjct: 180 PQDLNQHKAIK----LKSAHIDASWTLFDGDKWVTLDPEAQLTVNNATLAREAAIEGLGI 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 A +P+ I + DN L+ ++ED V +P+ K + F FI+ Sbjct: 236 ATVPNIIAQQALDNKQLIPLLEDFPMTQTKVIMSFPQRAYLPKKYRVFIEFIY 288 >gi|71277995|ref|YP_267565.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71143735|gb|AAZ24208.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 289 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 17/292 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA + SFT A++++ +S + +SRQIS LE + IKLFYR R ++LTE+G Sbjct: 4 WEGISEFVYVAENESFTLASKKMAISTAQVSRQISALEKRLNIKLFYRTTRKVSLTEEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ V L+ + + KP GK+++ + G+ + + FL Y D+++ Sbjct: 64 IFYQHCRSVLDGLDAAERAITNLQSKPQGKIKLTAPVTYGEKQILPLVNNFLKQYSDVEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ +D+ D D AIRL + SS++ +KL A+P YL P SI Sbjct: 124 SAYLSNQRVDLVEDGYDLAIRLGN-LSDSSMMAKKLGERSNFVCASPLYLHKHGIPHSIS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 EL+KH+ C+ N W RI+ L+ NS S+ + G GI Sbjct: 183 ELNKHS----------CLLGTNNYWHFRESDKEKSVRITGRLRYNSGYSLTDAALKGLGI 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY VK + LV ++++ P ++ YP+ + K++ +++ Sbjct: 233 VQLPDYYVKQHLQSGELVTLLDNYRAPDEGIWAIYPQNRHLSPKIRLLVDYL 284 >gi|161615584|ref|YP_001589549.1| hypothetical protein SPAB_03359 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|200389332|ref|ZP_03215943.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|161364948|gb|ABX68716.1| hypothetical protein SPAB_03359 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|199601777|gb|EDZ00323.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 304 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 S++EL +H + F + I N W +A D + E I C + NS ++ Q C+ Sbjct: 180 ESVEELKRHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLN 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|107103691|ref|ZP_01367609.1| hypothetical protein PaerPA_01004762 [Pseudomonas aeruginosa PACS2] Length = 307 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S+++ + LE + ++L R R L LT G+ Sbjct: 4 FDAMQAFARVVDTGSFTKAAEMLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L+ + L +++ P G+LRI L + LL L EF YP+IQI Sbjct: 64 AYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPEIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC IR + ++ SL+ R++ + + YAAP YL+ P + Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182 Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL D H I G +P M V G ++ N+YL+ + Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMRRGEECLRV---AGRHVLAVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ ++ L+ + ED +Y +P +GKL+ F ++ Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292 >gi|323495787|ref|ZP_08100857.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323319254|gb|EGA72195.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 289 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 13/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA++L S + +SR+IS LE + +KLF R R ++LTE G Sbjct: 3 NWEGVSEFVGVAETQSFTAAAKKLDTSVAQVSRRISSLEERLAVKLFNRTTRRVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ ++ LE ++ + + P G L++ + G+ L L +FL YP + Sbjct: 63 QLYYQQCKQLVEGLELAELAVTQMQSTPKGLLKVTAPVTFGEQQLAPLLHQFLERYPQVD 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+L N+ +D+ D AIRL + +Q SSLI ++L + + A+P YL+ EP ++ Sbjct: 123 LDLMLTNQKLDLIEMGVDVAIRLGR-LQDSSLIAKRLSSRQLFVCASPSYLEQYGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL H + G + D+ W + R+S + NS +++ + G G+ Sbjct: 182 SELSHHQCLV-GSV------DY-WRFRDSKSEKSLRVSGRIHCNSGYAVLDAAIRGLGLV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ ++ LV ++ + ++ YP+ + K++ +++ Sbjct: 234 QLPDYYVQPALESGELVEVLSNYRDEREGIWALYPQNRNLSPKVRLLIDYL 284 >gi|224582097|ref|YP_002635895.1| hypothetical protein SPC_0266 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466624|gb|ACN44454.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 304 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I C + NS ++ Q C+ G Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IECGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|16763639|ref|NP_459254.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995084|ref|ZP_02576174.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168239989|ref|ZP_02664921.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261347|ref|ZP_02683320.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194448830|ref|YP_002044240.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197262313|ref|ZP_03162387.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16418755|gb|AAL19213.1| putative LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194407134|gb|ACF67353.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197240568|gb|EDY23188.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205327153|gb|EDZ13917.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205340145|gb|EDZ26909.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349718|gb|EDZ36349.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267991943|gb|ACY86828.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156877|emb|CBW16353.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911221|dbj|BAJ35195.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224910|gb|EFX49971.1| Transcriptional regulator LysR family, yafC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128571|gb|ADX16001.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987202|gb|AEF06185.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 304 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I C + NS ++ Q C+ G Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IKCGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|163801909|ref|ZP_02195806.1| AphB/LysR family protein [Vibrio sp. AND4] gi|159174417|gb|EDP59221.1| AphB/LysR family protein [Vibrio sp. AND4] Length = 291 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L +T E+ + SGK++I+ +L + ++ F+ YPDI I+ Sbjct: 64 FYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNAFMKQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ + D R+ P + SSLI RK+ + A+P YL P +E Sbjct: 124 LKTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPEYLIANPAPNHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LSNHSLLKGSPLIKWTLINSKGESVVNVERGR-----FQANALNVVRSTCSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K +N +LVRI+ D +Y Y K++ F +F+ Sbjct: 238 DVMIKEYIENGDLVRILSDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|161619752|ref|YP_001593639.1| LysR family transcriptional regulator [Brucella canis ATCC 23365] gi|161336563|gb|ABX62868.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365] Length = 308 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 21/296 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA QL L+ ++++R+++ LET + L R G TLT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARQLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYC 235 S ++L++H LI + +ED ++ + P IS +V+S L ++ Sbjct: 194 SPEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAV 242 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 243 RAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296 >gi|241662055|ref|YP_002980415.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240864082|gb|ACS61743.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 305 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 140/289 (48%), Gaps = 27/289 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L +F V +GSFT AA +L L +SS+SR I+ LE ++ ++L R R L LT+ Sbjct: 1 MDLNQLALFVRVVEAGSFTAAATRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++V S +E E P GK+RI ++ D+G+ L+ F+ YP+I Sbjct: 61 GQSLYQVASHALEDIERATTCAGELQDLPRGKVRITSSEDVGRLLVAPVAARFMQQYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L +++D+ + D A+R+ + + SSL+ R L + + +A+P YL+ P + Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARSLGVLRIGLFASPDYLQRRGAPDT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVL-- 237 +Q L H C DF + R +G + + V + L+ L Sbjct: 180 VQGLADH-----------CCLDFRGTGRGETQWRLVGPDGLKTVAVRARLNADSLIYLET 228 Query: 238 ----GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 G+GI LP Y + + N P LVR++ D T + P A Sbjct: 229 LIASGAGIGPLPLYASAVARANAPLPRLVRVLPDYATSGEPINLVTPSA 277 >gi|186473730|ref|YP_001861072.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196062|gb|ACC74026.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 307 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 142/291 (48%), Gaps = 12/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDWD LR+F ARS S AA L +SQS+ISR+I LE + G KLF R ++GL LT Sbjct: 4 FDWDNLRIFLGAARSQSALEAAHALKMSQSTISRRIQRLERDTGSKLFERSSQGLRLTAA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + L+ + + SV +G++R+ T G L + F +P I Sbjct: 64 GHRLLEHVERLETTLQAVETSVFSDSVTLTGEIRLGATEGFGTFFLAPQVTHFCARHPGI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++ +++++S AD ++ + +P ++S + KL + YA P YL + Sbjct: 124 TVDVLPLPRNVNLSKREADASVAIDRP-SANSFVTCKLTEYRLLPYATPQYLSEHPPIKT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++L H I + D + + F+ WL ++ +P+ + S ++ + G Sbjct: 183 TEDLIGHRWIDYVDDLIFSNQQFSLPRWLPSL-KPV-------FRSTSVIAQAEAVRAGF 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LP ++ +LV ++ D I + T + P + ++KA ++I Sbjct: 235 GIGVLPCFLGSLGGDLVPVLPDQIDITRTFWLVAPPERRELARVKALWDYI 285 >gi|168465308|ref|ZP_02699190.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443748|ref|YP_002039490.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402411|gb|ACF62633.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632022|gb|EDX50542.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 304 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ + +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIAHFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E + C + NS ++ Q C+ G Sbjct: 180 EAVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|71282316|ref|YP_267580.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71148056|gb|AAZ28529.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 296 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 145/297 (48%), Gaps = 22/297 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+ V + SFT A+++L +S++ +S+ + +E ++GI+LF R R L LT+ G + Sbjct: 5 DGLKTVVAVVETNSFTAASDRLGISKALVSKYVGEVENQLGIRLFNRTTRQLALTDSGRR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + P G LRI+ + G+ L L +F+ LYPD+ ++ Sbjct: 65 YYEEAIILLEQFSAMVDNVTGEQTAPRGLLRISAPVTFGEMRLAPLLPKFIALYPDLTVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L N ID+ + D +R+ + S++I R L + A+P+Y + P + ++ Sbjct: 125 LVLTNGAIDMLEEGIDVRLRIGG-VDDSNMIARHLTNFPLVLSASPNYAQTQGLPTTPEQ 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--------SCLQVNSYLSIMQYCVL 237 L +H+ C+ D N+ P P+ S L VNS ++ + + Sbjct: 184 LGEHH----------CIIDSNFRIGKQWPFISPKGRAETINVQSGLAVNSPQAVREIAIA 233 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA+ P++IV+D + L+R+M + T F ++ YP K++ F +F+ Sbjct: 234 DGGIAMTPNFIVEDALADGRLLRVMPEYTTLEFGLFAIYPHRKYVARKVRCFIDFVL 290 >gi|15599369|ref|NP_252863.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218889497|ref|YP_002438361.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254242858|ref|ZP_04936180.1| hypothetical protein PA2G_03625 [Pseudomonas aeruginosa 2192] gi|9950383|gb|AAG07561.1|AE004834_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126196236|gb|EAZ60299.1| hypothetical protein PA2G_03625 [Pseudomonas aeruginosa 2192] gi|218769720|emb|CAW25480.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 307 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S+++ + LE + ++L R R L LT G+ Sbjct: 4 FDAMQAFARVVDTGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L+ + L +++ P G+LRI L + LL L EF YP+IQI Sbjct: 64 AYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPEIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC IR + ++ SL+ R++ + + YAAP YL+ P + Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182 Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL D H I G +P M V G ++ N+YL+ + Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMRRGEECLRV---AGRHVLAVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y+ ++ L+ + ED +Y +P +GKL+ F ++ Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292 >gi|66044614|ref|YP_234455.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63255321|gb|AAY36417.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|330968936|gb|EGH69002.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ +YP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N +D+ + D AIRL + +Q S L+ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIQRYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|168232186|ref|ZP_02657244.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472149|ref|ZP_03078133.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458513|gb|EDX47352.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333471|gb|EDZ20235.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 304 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQATSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 +++EL +H + F + I N W +A D + E I C + NS ++ Q C+ Sbjct: 180 ETVEELKRHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLN 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|209548041|ref|YP_002279958.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533797|gb|ACI53732.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 10/295 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA SF AA+ L +S ++SR +S LE +G +LF R +R L LT+ G Sbjct: 6 DFEGLAMFAKVAEERSFARAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +Y + E + +E + +P G +R+A +D G L L +F L+P+I Sbjct: 66 LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLPPILPDFFELFPEIS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + + +DI D D A+R+ + SSL+ R+L + AAP YLK P Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRIAV-LPDSSLVARRLAPVDRFILAAPAYLKQYGLPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL H+ + + + +D L + + P S NS +++ + G GI Sbjct: 185 RELTAHHCLGYAY---RARQDVWRLRNSEGKEEVISPSGSLRATNSQ-ALVPMALRGLGI 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LP+++ D + L I+ D P+ +YF P A K++ +F+ + Sbjct: 241 IELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLADFMMAR 295 >gi|237730191|ref|ZP_04560672.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226905730|gb|EEH91648.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 304 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 S++EL++H + F + P + W +A D + E + C + NS ++ Q C+ G Sbjct: 180 ESVEELNQHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|115360518|ref|YP_777655.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285846|gb|ABI91321.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 305 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 140/292 (47%), Gaps = 10/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA +S +++SR ++ LE+ +G +LF R +R L+LTE G Sbjct: 6 DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLESRLGARLFNRTSRQLSLTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+Y + E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 RTISEQAGEIYRRAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D A+R+ + SSL+ R+L + A+P YL+ P Sbjct: 126 IDLHLSDASVDLIAEGFDAALRI-AALPDSSLVARRLCAVTQFVVASPDYLRREGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241 +EL +++ + W T D EP + L+V + +++ + G I Sbjct: 185 RELADRPCLSYAYRARSAV----WRFTNDVGDEEPVMPTGPLRVTNADALLSTLLDGLAI 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LP++I + + L I+ D +YF P A K+ A ++ Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVTALSDYF 292 >gi|261340917|ref|ZP_05968775.1| contact-regulated protein A [Enterobacter cancerogenus ATCC 35316] gi|288316774|gb|EFC55712.1| contact-regulated protein A [Enterobacter cancerogenus ATCC 35316] Length = 301 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S+ISR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELTIFVAVVESGSFSRAAEQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSVLQEMAAAETEIIESRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAGN-LTDSSLRARPLFTSYRKIIASPQYIAQFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 ++++L +H + F + P + W +A D + E +SC L NS ++ Q C+ G Sbjct: 180 ETVEDLRQHTCLGFTE--PLSLN--TWPVACHDGQLYE--VSCGLSSNSGETLKQLCLEG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV +M D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|118588657|ref|ZP_01546065.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] gi|118438643|gb|EAV45276.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] Length = 310 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 138/272 (50%), Gaps = 9/272 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F V SGS + AA +L +++S++SR++S LE G +L R LTE G + Sbjct: 9 EDLRLFVQVVASGSISKAAAELGIAKSAVSRRLSLLEDRYGTRLVDRSPGHWDLTETGRE 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + S ++ + + + PSG L I+ D G L L +F +PDIQ+ Sbjct: 69 LFQRASRFVSDVDDIEDDFLSNGTAPSGPLSISIPRDFGHGFLNKELIDFQARHPDIQLT 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D++ +D++ + D AIR+ + + I KL T+ +A+P YL+ P SI + Sbjct: 129 VDFDDRLVDLARENYDFAIRITE-TRPEDAITMKLGTVEHCLFASPDYLRGHPAPQSIDD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALL 244 L KH L+ FG + + +F + I +P L NS ++ + G GI+ L Sbjct: 188 LPKHRLLHFG-WARRTVWEFQTQKGKRQQIEFQP---ALNSNSGTFLLDATIQGHGISRL 243 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 PD+IV + LV ++ D+ P++ +Y + Sbjct: 244 PDFIVTEALAAGKLVPLLPDIAVPAWGIYLLH 275 >gi|163744910|ref|ZP_02152270.1| transcriptional regulator, LysR family, putative [Oceanibulbus indolifex HEL-45] gi|161381728|gb|EDQ06137.1| transcriptional regulator, LysR family, putative [Oceanibulbus indolifex HEL-45] Length = 301 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 139/292 (47%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSEFLSDFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPKYFEQYGRPEKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 185 NNHKLLHYSNQSSGNV----WKLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D ++ED I + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYADAME-KGLVEDAIPELPLETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|302187921|ref|ZP_07264594.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae 642] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ +YP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N +D+ + D AIRL + +Q S L+ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|330950655|gb|EGH50915.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae Cit 7] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ +YP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N +D+ + D AIRL + +Q S L+ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|330807804|ref|YP_004352266.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375912|gb|AEA67262.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA FT AAE+L +S S ISRQI+ LE + +L YR R +TLTE G Sbjct: 6 WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGLYPQLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S L+ +L M+ A+P YL+ P S+ Sbjct: 126 DIELSNRPLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + D L R + + NS +++ + G G+ L Sbjct: 185 ELSRHNCLIGSS-------DVWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + + L+ ++E P+ V+ YP+ + K++ +F+ Sbjct: 238 PDYYVLEHLHSGALISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDFL 286 >gi|254487575|ref|ZP_05100780.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] gi|214044444|gb|EEB85082.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] Length = 301 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 138/291 (47%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L FL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSGFLEEFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPEKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + M W T P GE R L VN S++ V G GIA Sbjct: 185 NDHKLLHYSNQSSGNM----WKLT--SPSGEKRQVRTAGWLSVNDGQSLLNAAVSGLGIA 238 Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D LV + D+ + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYADAMEKGLVEDAIPDLPLETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|270261398|ref|ZP_06189671.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044882|gb|EFA17973.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 306 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 140/271 (51%), Gaps = 9/271 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V +G+F+ AAE+LHL++S++ + I+ LE +G+ LF+R+ARGL+LT +G + Sbjct: 10 TFVRVVEAGNFSLAAERLHLTRSAVGKSIARLEQRLGVLLFHRNARGLSLTHEGQAYYDR 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +L+ EL +P G LR++ LG++ + L + YP++Q+ + + Sbjct: 70 CLRALSELDAADAELDNGRREPQGTLRVSAPKLLGRHCITPVLMALVGRYPNLQVDIAFN 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D++ + D AIR+ S+++I R+L H+ AAP YL P S+ LD H Sbjct: 130 DRVADLAEEGFDLAIRIGPLNDSANIIARRLGGQHLALCAAPAYLAAHGNPQSVAALDGH 189 Query: 190 NLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247 + I + + ED W D + I L+++ S+ V G+G+ LP++ Sbjct: 190 SGIAY----HRFGEDVGWRQLQADAAASKLNIDIRLRLDDLHSLADAAVAGAGLVWLPNW 245 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 ++ LV +++D+ ++ +P+ Sbjct: 246 LLARYLRCGELVPVLDDIHLLPSDIHAVWPQ 276 >gi|238761917|ref|ZP_04622891.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] gi|238700031|gb|EEP92774.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] Length = 302 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 139/291 (47%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AAE + L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFARVAECGSFTRAAEMVGLPKSSVSQRISQLEQSLGIRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG LL +F YPD+ ++++ Sbjct: 68 VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLAQLATDFQRQYPDVLLEVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + D A+R KP Q SSLI R+L + A+P YL + ++LD Sbjct: 128 VSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLVHPRQLD 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243 H +C+ W A + R E ++ L V L + C L G GI L Sbjct: 187 TH----------RCIAHRAWQALILRREDEFYRWQVPALHVTDNLLYARECALSGGGITL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP ++ ++ + L+ ++ +Y YP N+ L F + + Sbjct: 237 LPAFLSREVVASRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVI 287 >gi|320157223|ref|YP_004189602.1| transcriptional regulator LysR family in formaldehyde detoxification operon [Vibrio vulnificus MO6-24/O] gi|319932535|gb|ADV87399.1| transcriptional regulator LysR family in formaldehyde detoxification operon [Vibrio vulnificus MO6-24/O] Length = 294 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 10/260 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W+ + F VA SGSFT AA +L S +++SR++ LE +G+KL R R ++LTE Sbjct: 3 NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + L ++ + + P GKLRI + G+ + L +FL+ YP Sbjct: 63 AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIASLLNDFLIRYPK 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+L N+ +D+ D A+RL + ++ SS + R+L H+H A P Y + P Sbjct: 123 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L HN + + E+ R I RI C +S + ++ + G G Sbjct: 182 TLSDLSSHNCLIGTHDHWRFKENHQ-----GRSIKVNGRIRC---SSGVVLLDAALKGIG 233 Query: 241 IALLPDYIVKDNPNLVRIME 260 + LPDY V ++ R++E Sbjct: 234 LVQLPDYYVDEHLRAGRLIE 253 >gi|319793119|ref|YP_004154759.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595582|gb|ADU36648.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 323 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 140/279 (50%), Gaps = 22/279 (7%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR S GS + AA L +Q +IS+ ++GLE +G++L R A GL+LTE+ Sbjct: 2 DTLRALSAFVHSVELGSLSGAARALDTTQPTISKLVAGLERSLGVRLMRRGATGLSLTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + H V + +E +P G LR++ + +GQ L EFL LYPDI Sbjct: 62 GQRFHERARRVLEDYGDAVADAREQVQQPQGLLRVSAPVTMGQRHLNAMAMEFLRLYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-----AAPHYLKNC 177 +++L+LD++ +D + D ++R+ + LV H+ ++ A+P Y+ Sbjct: 122 ELELVLDDRFVDPREERIDVSLRV------GGALPPDLVAKHLGSWPRVLVASPDYIAAR 175 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +P + ++L H+ I + +D L + + P S L+VN+ ++++ + Sbjct: 176 GKPRNPKDLLSHDYIRYA-----AGDDGVLLQGPEGAVTVPVRSRLRVNNAVAMLDSVLG 230 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G+GI+L P ++V + +LVR++ P+ V+ Y Sbjct: 231 GAGISLQPTWMVASHLADGSLVRVLARHTGPAQEVHLLY 269 >gi|330721477|gb|EGG99525.1| Transcriptional regulator2C LysR family [gamma proteobacterium IMCC2047] Length = 297 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 143/289 (49%), Gaps = 9/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD F V GSF+ AA+ L++S+S +SR ++ LE +G +L R R +TLTE G Sbjct: 4 WDGFEAFVHVVDQGSFSKAAQHLNVSKSFVSRHVTDLENRLGAQLLNRTTRTITLTEVGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E+ + LE + + + +P G L++ G+ + +F+ L P++ I Sbjct: 64 SFYTRCREILNGLEEAEHAVFDMQERPRGTLKMTAAGAFGETYVVPIAVDFMKLNPEVNI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + N++ID+ + D AIR ++ SSLI R++ T +H +P Y + P SI Sbjct: 124 DISFTNRNIDLVAEGYDLAIRF-GVLKDSSLIARRIATRQLHVVGSPDYFQQFGLPQSID 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN + I + E N T + G R N+ ++++ G G++ + Sbjct: 183 QLKQHNCLAGALNIWRFSETGNQGHTEVKIEGNWR-----SNNARALLEAARKGLGLSQM 237 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P V+D+ L+ ++++ V+ YP + + K+++F +F+ Sbjct: 238 PAAYVQDDIESGALISVLDEYQPRDLGVWAVYPSSRHLSTKVRSFIDFL 286 >gi|238025413|ref|YP_002909645.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237880078|gb|ACR32410.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 305 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA ++ +S +++SR ++ LE +G +LF R +R L LTE G Sbjct: 6 DFEGLAMFAKVAEEGSFAAAAREMGVSVATVSRGVARLEDRLGARLFNRTSRQLALTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L E+Y + E + +E SV+P G +R+A + G + + F LYP + Sbjct: 66 RALCEKAGEIYRQAEAVEGAARELSVQPRGLVRLAVPMSFGLRWVAPLMPGFFRLYPQVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ + D A+R+ + SSL+ R+L + + A+P YL P Sbjct: 126 VDLHLADATVDLVAEGFDAALRI-AALPDSSLVARRLCAVTQYLVASPGYLAREGRPSHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +EL+ +++ + F A + P+ L+V + +++ + G IA Sbjct: 185 RELNGRACLSYAYRAHSDVWRFTNQAGDEEPVMP--AGPLRVTNSDALLPMLLEGLAIAE 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++I + + L I+ D +YF P A K+ A ++ Sbjct: 243 LPEFIASEYLADGRLEAILTDWSLTRGGLYFVTPSARARPAKVSALSDYF 292 >gi|54303238|ref|YP_133231.1| LysR family transcriptional regulator [Photobacterium profundum SS9] gi|46916666|emb|CAG23431.1| Putative transcriptional regulator, LysR family [Photobacterium profundum SS9] Length = 293 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F V + SFT A+++L +S + +SRQIS LE + KLFYR R +++T+ Sbjct: 6 FNWEGVSEFVAVTETESFTAASKRLGISTAQVSRQISALEKRLSAKLFYRTTRKVSVTDV 65 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V L+ + + P GKL+I I G+ + + +F L YPD+ Sbjct: 66 GRVYYQHCRQVLDGLDEAERAISNLQSSPQGKLKITAPITYGEGTVAPLINDFTLQYPDL 125 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L N+ +D+ + D AIRL + ++ SS++ ++L + + A+ YL P S Sbjct: 126 EVNLQLSNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASEKYLSTHGVPYS 184 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + EL+ HN + G L D+ W + RI L+ NS ++ + G GI Sbjct: 185 LSELNHHNCLQ-GTL------DY-WRFQENGKHRNIRIKGNLRCNSGHALTDAALKGLGI 236 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ DN L+ ++ ++ YP + K++ +F+ Sbjct: 237 VQLPDYYVQEYIDNQQLIPLLTQFTESDDGIWALYPHNRHLSPKVRMLVDFL 288 >gi|260568904|ref|ZP_05839372.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260154288|gb|EEW89370.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] Length = 293 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA QL L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARQLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P S Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|153000928|ref|YP_001366609.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|151365546|gb|ABS08546.1| transcriptional regulator, LysR family [Shewanella baltica OS185] Length = 292 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 150/296 (50%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + SFT AA++L++S + +SRQ+S LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ +P ++ Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL +HN + + + N+ V+ G R L NS ++ + G G Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++++ L+ +++ ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEEDIQAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287 >gi|83746103|ref|ZP_00943158.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207742398|ref|YP_002258790.1| hypothetical protein RSIPO_00585 [Ralstonia solanacearum IPO1609] gi|83727286|gb|EAP74409.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206593788|emb|CAQ60715.1| hypothetical protein RSIPO_00585 [Ralstonia solanacearum IPO1609] Length = 305 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 21/286 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L +F V +GSFT AA +L L +SS+SR I+ LE ++ ++L R R L LT+ Sbjct: 1 MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++V S +E E P GK+R+ D+G+ L+ + F+ YPDI Sbjct: 61 GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L +++D+ + D A+R+ + + SSL+ R L + + +A+P YL+ P + Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGVPQA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 +++L H+ + F + W R +G + + V + L+ L Sbjct: 180 VRDLGHHSCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231 Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 G+GI LP Y + + N P LVR++ D T + P A Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPDYATSGEPLNLVTPTA 277 >gi|254560209|ref|YP_003067304.1| LysR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254267487|emb|CAX23328.1| transcriptional regulator, LysR family [Methylobacterium extorquens DM4] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ L F +AR G AA +L + +++SR+I+ LE + KLF R + G LTE Sbjct: 2 FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G KL + + K+ + EL S +P+G++R+A+ + L EF P Sbjct: 62 GHKLFVIAEAIEQKMLSVPDELGLSDGAEPAGRVRVASMEGIAAFYLSAKFAEFAAAMPG 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ + I+++ AD ++ P Q L R++ + + A Y P Sbjct: 122 IVVELVTERHLINLTKREADISVSFVPP-QGPRLKVRRVGEFRLALFGAERYFATHGRPT 180 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L H+ + + DL+ +E +WL V +P + S + G+G Sbjct: 181 TRADLQDHDFVDYVDDLV--AIEPVHWLLEVLKPTN----VVFRSTSMAAQQTAVAAGAG 234 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LLP + K NP L+ ++ D + +Y E +++ G+++A F+ Sbjct: 235 LGLLPLFSAKTNPALIPVLADDVVVQRELYLGVHEDIEHAGRIRAVTRFL 284 >gi|269966021|ref|ZP_06180113.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B] gi|269829417|gb|EEZ83659.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B] Length = 291 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L T E+ + SGK++I+ +L + ++ F+ YPDI I+ Sbjct: 64 FYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +N + D R+ P + SSLI RK+ + A+P YL + P +E Sbjct: 124 LTTENNADKLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLTSNPAPHHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LSNHSLLKGYPLIKWTLINSKGESVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K ++ +LVR++ D +Y Y K++ F +F+ Sbjct: 238 DVMIKEYIESGDLVRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|323497147|ref|ZP_08102167.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323317722|gb|EGA70713.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 300 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 10/300 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA+Q+ L++S +S++I+ LE E+G++L YR R L LTE G Sbjct: 5 DDYIIFYHLVEQGSFSAAAKQMELTKSVVSKRIAKLEKEIGVQLLYRTTRTLKLTEAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V+ + T + + SG ++I G+ +L + EF L YPDI I Sbjct: 65 FFEHARRVFQAVATAEESIVGLGKSLSGNIKITVPTISGELILPTVISEFNLQYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ DI + D AIR + SSLI RKLV + A+P YL +P S + Sbjct: 125 MELDNRFADIINEGFDLAIR-TGVLPDSSLIARKLVDANWVVCASPMYLAKHGKPASPKA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + + E W + I + ++ L N+ ++ +LG G+ + Sbjct: 184 LVDHNCLAYAYQETGARE---WAFKSESGIYQVQVDGNLCTNNSSALRNVALLGQGLIYV 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWKF 299 P +V ++ L+++ +D +Y YP + K+K F + ++ ++R +F Sbjct: 241 PRVLVYEDLQQGKLIQLFKDETAKCLGIYTVYPYTRQQPEKVKLFIDHLYTCFQSRSHQF 300 >gi|146293271|ref|YP_001183695.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145564961|gb|ABP75896.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] Length = 292 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 150/296 (50%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + SFT AA++L++S + +SRQ+S LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + A+P Y++ +P ++ Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSNRTHYVAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL++HN + + + N+ V+ G R L NS ++ + G G Sbjct: 183 ELNQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++++ R++ + T ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEEDIQAGRLLSFLDTHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287 >gi|83950856|ref|ZP_00959589.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] gi|83838755|gb|EAP78051.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] Length = 301 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L FL +PDI + + Sbjct: 66 YDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGSFLDEFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ S+L RKL A+P YL+ P I +L Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETTKRMIASPAYLEKYGRPTKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSSQAGGSV----WKLTA--PSGEKRQVRTAGGLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ + + LV ++ D+ + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYSEALSKGLVEDVIPDLPMETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|317405414|gb|EFV85727.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 302 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 143/292 (48%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F + GS AAE L +S + +S+Q+ LE +G L R R ++LT+ G+ Sbjct: 4 FNYMRAFRRIVELGSLAKAAEDLDMSSAGLSKQLRALEAHLGAVLIQRTTRKMSLTDTGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + ++ S + SG+LR+ + ++L L FL YP++++ Sbjct: 64 AYYAECCRLLDALDALEKSVKRQSGRVSGRLRVNAPVSFALSVLSPLLARFLRQYPELRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++++ +D D +IRLR + SSLI R+L ++ AAP YL+ P S++ Sbjct: 124 DLAMEDRLVDAVGQGFDVSIRLRAQLDDSSLIARRLASLTQVLCAAPSYLERRGLPDSVE 183 Query: 185 ELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H+++++ P ED A P+ P + +QVN+ L + G GI Sbjct: 184 ALRGHDILSYSLADSPGPVPEEDAGQPAD---PLAGP--ALIQVNNSLMLRDLLEAGLGI 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ L R++ ++ VY YP + K+KAF +F+ Sbjct: 239 GALPSFLAGPALAAGRLARVLPELPGSPRQVYAVYPTSRHLQPKVKAFVDFL 290 >gi|227114283|ref|ZP_03827939.1| LysR family transcriptional activator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 302 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 139/291 (47%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L++SS+S +IS LE ++G++L R R L LT G + Sbjct: 8 MALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI + LG LL EF +P + + ++ Sbjct: 68 IHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQHFPAVSLDVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + ID+ + D A R KP SSLI R L + A+P YL L Q+L Sbjct: 128 ISDDVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHLALLHPQQLQ 186 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I L+ + E + WL + + I+ ++ L + + G+GI L Sbjct: 187 QHRCIAHHAWTEWLLHRGSELYRWL------LPDSHIT----DNLLYARECAIAGAGITL 236 Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LPD++ D LVR++ D + +Y YP N+ L F +F+ Sbjct: 237 LPDFLCLDEAVSGKLVRVLPDWQVEANELYLVYPSRKLNSPALACFIDFVL 287 >gi|254427486|ref|ZP_05041193.1| LysR substrate binding domain protein [Alcanivorax sp. DG881] gi|196193655|gb|EDX88614.1| LysR substrate binding domain protein [Alcanivorax sp. DG881] Length = 303 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 13/291 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + ++G T AA L +S ++IS+++ LE E+G++L R+AR + +T++G L Sbjct: 11 VFVQLVKAGKMTDAARVLGMSPATISQRLRHLEQELGVRLVNRNARAMKVTDEGRALFER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + LE T + + + P G LR+ +T+ LG+N + +KEF+ +P++ +QL L Sbjct: 71 LDGLMGDLEDTAEAVVQLAKGPHGTLRVWSTMGLGRNRIAVLVKEFIARFPEVPVQLFLG 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D + D AI + +P + SSL+ RKL+ H A+P YL + ++L H Sbjct: 131 DRPYDFVSEGLDVAIAIGQP-EDSSLVARKLMDNRCHLIASPQYLATHPALKTPEDLRDH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALLP 245 LI C F + G+ L + ++Q+ V G GIAL Sbjct: 190 EC-----LILDCHASFKDFWPLYDDQGDRHAVKVHGRLHTDHSEVLLQWAVDGMGIALKS 244 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + ++ D+ LV ++ + P Y YPE K + F +F+F K Sbjct: 245 AWDIQPYLDDGRLVEVLPNYRPPDLDFYLVYPERKCLPAKTRVFMDFLFEK 295 >gi|34498161|ref|NP_902376.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34104016|gb|AAQ60376.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 302 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 21/290 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V G FT AA+QL L ++++S + LE ++G +L +R R + LT G + Sbjct: 7 MRVFVAVVDCGGFTRAAQQLQLPRATVSSAVQQLEAQLGARLLHRTTRRVQLTLDGGTFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + + P GKLRI +G+ +L L EF LYP I+++L Sbjct: 67 ERCQQLLADFDELESLFSQQGASPRGKLRIDVPGPIGRQVLAPALPEFFRLYPGIELELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR+ + S L+ R++ + YA+P YL P S L Sbjct: 127 VTDRPVDLIQEGVDCVIRV-GALAESRLVARRIGMLPQGNYASPDYLAAFGAPASPDALA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-------ISCLQVNSYLSIMQYCVL-GS 239 H + + P + F W D GE R +S QV SY++ C L G Sbjct: 186 GHRAVNYAS--PSTGKVFAWEYLQD---GERRELALQSLVSVNQVESYIA----CALAGL 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ LP Y + + LV ++ D P+ V YP + +++ F Sbjct: 237 GMIQLPRYDAEPHVAAGALVEVLADWPPPAMPVSVLYPHRRHLSRRVQVF 286 >gi|83644057|ref|YP_432492.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632100|gb|ABC28067.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 330 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 9/297 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA + SF AA ++ LS+S ++R++ LE E+G+ L R R ++LT G + Sbjct: 33 LTAFVNVAEAESFAKAAREMGLSRSQVNRRVIALEDELGVTLLARTTRHVSLTPTGQAFY 92 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L + +Q +P G L+I + G L L +F+ YP+I++ L+ Sbjct: 93 LRAKSILNDLREAETAIQSDHAEPQGDLKINAPMSFGTMHLSSALADFMTRYPNIRVHLV 152 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D + D +R+ + ++ SLI+ +V A+P YL+ P +I+EL Sbjct: 153 LDDRFVDPVSEGFDITVRVAETREAPSLIEHTIVEAKRLLCASPGYLQQHGRPRTIKELA 212 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 + +G+L + W L D P R++ L N+ ++ V G G+ALLP Sbjct: 213 SRPCLHYGNL----ASGYTWRLRRGDAPETSVRVNGVLCCNNAEALRDAAVAGLGVALLP 268 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +I LV ++ + P + YP +++ F F+ + D + Sbjct: 269 TFIAGPELQTGRLVSVLPEYQAPPVYLSLLYPPNRHLAARVRVFVKFMQARFGDQPY 325 >gi|156935501|ref|YP_001439417.1| hypothetical protein ESA_03360 [Cronobacter sakazakii ATCC BAA-894] gi|156533755|gb|ABU78581.1| hypothetical protein ESA_03360 [Cronobacter sakazakii ATCC BAA-894] Length = 305 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 12/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA +GSFT AA++ L +SS+S++IS LE VG++L R R L+LT G Sbjct: 8 MALFALVAETGSFTAAAQKAGLPKSSVSQRISQLEAHVGLRLLNRTTRKLSLTFAGEHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI + +G LL EFL YPDI +++ Sbjct: 68 VHCREMLDASERADLAIQRLRDNPSGRLRITSPAGIGATLLARMNAEFLAKYPDITLEVF 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ M+ D A+R KP Q SSLI RK+ + A+P YL +L Sbjct: 128 ISDDVRDLVMEGFDVALRTGKP-QDSSLIGRKIGHCPRYLLASPAYLARHPALTHPSQLV 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 H +I + + + WL DR + ++ + Q ++ L + + G+GI LLP Sbjct: 187 DHRVI-----VHRAWSE--WLLQRDRELYRCHLNQMHQTDNLLYARESALAGAGITLLPA 239 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +++ D+ LV ++ + +Y YP N L ++ NF Sbjct: 240 FLLDDSLAEGALVNVLPEWTVTGNDLYLVYPGRKLNAPALVSYINF 285 >gi|146292916|ref|YP_001183340.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145564606|gb|ABP75541.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] Length = 297 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 149/290 (51%), Gaps = 13/290 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA SF A +L +S S++ + + LE ++G++LF R R +TLT +G Sbjct: 6 VFVQVAEQRSFVGAGRELGVSASAVGKSVVRLEEKLGVRLFNRSTRSVTLTAEGLLFLER 65 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E Q+EL +++ P G+LR+ ++ L +L+ L EF+ YPDI++ L Sbjct: 66 SRRILAEIEAAQLELSQATGAPRGRLRV--SLPLVSSLVLPVLGEFMREYPDIELDLDFT 123 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P Q S L R+L M A+P YL P + +L +H Sbjct: 124 DRMVDVIEEGFDAVVRTGEP-QDSRLSARRLGNFQMRLVASPDYLALRGTPQTPADLLQH 182 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPD 246 + + + P + W + +P+ EP++ + + N+ + + + + G GIA LPD Sbjct: 183 SCLHY--RFPNSGKLETW--ALKQPLDEPKLQLPTSMICNNIETRLCFALQGLGIAYLPD 238 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + + + N L I+ D + + T Y +P + K++A +F+ K Sbjct: 239 FAIHEPLANGRLRPILADYVQRTGTFYILWPASKHPLPKVRALVDFLCAK 288 >gi|330896083|gb|EGH28304.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA +L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAVRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S L+ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWGLYPQQRHLSPKVRKLVDYL 286 >gi|261245481|emb|CBG23271.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 304 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGEQYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I C + NS ++ Q C+ G Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IKCGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|90407747|ref|ZP_01215925.1| Putative transcriptional regulator, LysR family protein [Psychromonas sp. CNPT3] gi|90311107|gb|EAS39214.1| Putative transcriptional regulator, LysR family protein [Psychromonas sp. CNPT3] Length = 288 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 11/276 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 W + F VA + SFT A++ LH+S + +SRQ+S LE + IKLFYR R ++LT++ Sbjct: 1 MSWQGINEFVAVAATQSFTMASKNLHISTAQVSRQVSALEKRLNIKLFYRSTRKVSLTQE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ V L+ + L + SG ++++ I G+ +Q L +F+ L+P I Sbjct: 61 GQLFYKDCKNVLEGLKAAEDALSNLQQQASGSIKLSAPITFGEQKIQPLLNDFIKLHPQI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L N+ ID+ D AIRL ++ S+L+ +KL + A+P Y++ P S Sbjct: 121 EIISELSNQRIDLLAGGFDLAIRL-GSLEDSNLLAKKLALRSTYVCASPAYIEKFGVPHS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG-I 241 EL HN + L + M FN + I C NS + ++ + G G I Sbjct: 180 TSELRTHNCL----LGTRDMWHFNEQGKEKNIRVKGNIRC---NSGIGLVDAALKGIGLI 232 Query: 242 ALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPE 275 L DY+ + + L+R+++ V ++ YPE Sbjct: 233 QLANDYVDEYIKSGQLIRVLDSVRPNDEAIWAIYPE 268 >gi|187926406|ref|YP_001892751.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gi|241665893|ref|YP_002984252.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728160|gb|ACD29324.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gi|240867920|gb|ACS65580.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 314 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 146/286 (51%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA+ L L +++++ + LE +G++L +R R + +T G+ + Sbjct: 7 MQVFTRVVEASSFTKAADSLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE T+ +SS G LRI +G+ LL +++F YPD+Q+++ Sbjct: 67 ERCVRLLGDLEETEAAFSQSSSGARGTLRIDVPASIGKRLLVPRIRDFHEAYPDLQLEIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DCA+R +Q SSL+ R++ + M A+P YL C P ++++L Sbjct: 127 MSDRTVDLVQEGVDCAVR-GGELQDSSLVARRIGQLSMVNCASPEYLARCGTPKTLEDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + D++++ + I + R S + VN S + + G G+ + Sbjct: 186 DHTAVNYFSARNGRRMDWDFVIDGQKQIHKVR-SMVSVNDAESAVACGLHGLGLLQTSRF 244 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V + + LV ++ D I+ + V YP + K++ F +++ Sbjct: 245 LVYEHLMSGALVEVLPDHISEAVPVSVVYPHNRHLSPKVRVFVDWV 290 >gi|146281692|ref|YP_001171845.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501] gi|25136593|emb|CAD44482.1| LysR protein [Pseudomonas stutzeri] gi|145569897|gb|ABP79003.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501] Length = 307 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAETLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +S P G+LR+ L + +L L F YPDIQ+ Sbjct: 64 AYYERVVRLLADMDDAETSLSGASTLPRGRLRVDVPSPLARMILVPALPAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R I SL+ R++ + + YAAP YL+ P + Sbjct: 124 DMGVSDRRVDLIDENVDCVVR-GGDITDQSLVARRVGDLRLGVYAAPGYLERAGTPRHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G + P M V +G+ ++ N+YL+ + Sbjct: 183 ELENTHHRIVGFLWARAGKVFPYAMHGNGERVEV---LGQYVLAVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ K++ LV + E +Y +P + KL+ F +++ Sbjct: 237 GLGILWLPDYMAKEHLARGELVLLFEHWQLEPMPLYVAFPPNRHVSAKLRVFIDWV 292 >gi|168238655|ref|ZP_02663713.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737606|ref|YP_002113273.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713108|gb|ACF92329.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288591|gb|EDY27968.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 304 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E + C + NS ++ Q C+ G Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|163850588|ref|YP_001638631.1| LysR substrate-binding [Methylobacterium extorquens PA1] gi|163662193|gb|ABY29560.1| LysR substrate-binding [Methylobacterium extorquens PA1] Length = 317 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ L F +AR G AA +L + +++SR+I+ LE + KLF R + G LTE Sbjct: 21 FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 80 Query: 63 GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G KL + + K+ + EL S +P+G++R+A+ + L EF P Sbjct: 81 GHKLFVIAEAIEQKMLSVPDELGLSDGAEPAGRVRVASMEGIAAFYLSAKFAEFATAMPG 140 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ + I+++ AD ++ P Q L R++ + + A Y P Sbjct: 141 IVVELVTERHLINLTKREADISVSFVPP-QGPRLKVRRVGEFRLALFGAERYFATHGRPT 199 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L H+ + + DL+ +E +WL V +P + S + G+G Sbjct: 200 TRPDLQDHDFVDYVDDLV--AIEPVHWLLEVLKPTN----VVFRSTSMAAQQTAVAAGAG 253 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LLP + K NP L+ ++ D + +Y E +++ G+++A F+ Sbjct: 254 LGLLPLFSAKTNPALIPVLADDVVVQRELYLGVHEDIEHAGRIRAVTRFL 303 >gi|153008401|ref|YP_001369616.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560289|gb|ABS13787.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 293 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA++L L+ ++++R+++ LET + L R G TLT+ Sbjct: 1 MNWDDIRIFLAVARSGQILGAAKRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTQA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + + + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARSHVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q LI R+LV + YA YL+ P + Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPEQ-GRLIARRLVDYTLGLYAHRSYLEANGTPEN 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 +L +H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 TDDLARHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSALGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I + +P+LV I+ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHAFIARADPDLVPILPDRVIRRAY--WLAYHESARTLRRVTAISALI 281 >gi|325121775|gb|ADY81298.1| putative LysR family transcriptional regulator [Acinetobacter calcoaceticus PHEA-2] Length = 301 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 146/280 (52%), Gaps = 11/280 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V +GSF AAEQLHL++S+IS+ I+ LE ++G+ LF R R L++T Sbjct: 1 MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + + +++ L + + +G+LR++ + GQ + +F + Sbjct: 61 DEGALFYEHSGRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+++ +++ +D+ + D IR+ ++ L+ + + M A+P YL Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNEAGSL 180 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +I++LD+H I FG + ++ N +P + L +N +I + Sbjct: 181 ENIEDLDQHATIADPHFGQMQKWRLQKENSEPFFIKPKAK-----LLLNDLQAIKNAALA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G+GIA LPD+++++ LV+++E + + +F ++ +P Sbjct: 236 GAGIAWLPDWLIQNELQEGKLVQVLETMSSIAFPIHLVWP 275 >gi|307129404|ref|YP_003881420.1| transcriptional regulator [Dickeya dadantii 3937] gi|306526933|gb|ADM96863.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 305 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 14/304 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA + +S ++SR ++ LE +G +LF R +R L LTE G Sbjct: 6 DFEGLAMFAKVAEEGSFAAAARVMGVSVPTVSRAVARLEERLGGRLFNRTSRQLALTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE+Y + E + E E SV+P G++R+A + G + L E + +P++ Sbjct: 66 QSMAAKASEMYRQAEEVESEAHELSVQPRGQVRLAVPMSFGLRWVVPLLPELIRQFPELS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ + D A+R+ + SSL+ R+L + + AAP YL P Sbjct: 126 VDLHLSDASVDLIAEGFDAALRI-AALPDSSLVARRLCAVTQYLVAAPAYLAEHSAPQHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 +EL ++ + F + P G L+V + +++ + G G Sbjct: 185 RELSGRQCFSYAYRARSQVWRFTHHSGAQEDIVPNGP-----LRVTNSDALLPSLLAGQG 239 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 IA LP++I + +LV ++++ +YF P + K+K +F +L Sbjct: 240 IAELPEFIAAEYLKAGSLVHLLDEWSMTQGGLYFVTPTSRSRPLKVKVLSDFFAKYLSEP 299 Query: 296 DWKF 299 +W++ Sbjct: 300 EWRW 303 >gi|86356244|ref|YP_468136.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280346|gb|ABC89409.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 297 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 21/300 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V+ SFT AAE+L ++++++ Q+ LE +GI+LF R R + LTE G+ Sbjct: 8 DGIAAFLTVSTHLSFTKAAEELSMARATVGAQVRQLEDRLGIRLFQRSTRKVALTEAGAA 67 Query: 66 LHRVTSEVYHKL---ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + S + ++ E I Q+ +V G+LR++ DLG ++ + EFL L P + Sbjct: 68 YRQALSGILPQIREAERAAISFQKEAV---GRLRVSAPPDLGHLVIVPAVSEFLKLNPAV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L L ++ +++ D D AIR R + +LI R+L T + A+P Y+ P++ Sbjct: 125 SVELDLSHRPVNLVEDGFDLAIRGRLEVD-INLITRQLATSSIVISASPAYIAEHGVPMT 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238 +L H + F +L + W + D GE P + L++N L + VLG Sbjct: 184 PHDLVHHACLHFAELRWGRI----WPFSRD---GEEFRIPIVPRLELNHSLGLRDAAVLG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GI LLPD++V ++ LVR++ D + + YP K++ F +F+ K R Sbjct: 237 LGIVLLPDFVVGEDLRQGRLVRLLPDWDISTIQLQAVYPANRHIAVKVRRFVSFLAGKLR 296 >gi|90410168|ref|ZP_01218185.1| Putative transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90329521|gb|EAS45778.1| Putative transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 289 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F V + SFT A+++L +S + +SRQIS LE + KLFYR R +++T+ Sbjct: 2 FNWEGVSEFVAVTETESFTAASKRLGISTAQVSRQISALEKRLSAKLFYRTTRKVSVTDV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V L+ + + P GKL+I I G+ L + +F L YP++ Sbjct: 62 GRVYYQHCRQVLDGLDEAERAISNLQSSPQGKLKITAPITYGEGTLAPLINDFTLQYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L N+ +D+ + D AIRL + ++ SS++ ++L + + A+ YL P S Sbjct: 122 EVNLQLSNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASEKYLSTHGVPYS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + EL+ HN + G L D+ W + RI L+ NS ++ + G GI Sbjct: 181 LSELNHHNCLQ-GTL------DY-WRFQENGKHRNIRIKGNLRCNSGHALTDAALKGLGI 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ DN L+ ++ ++ YP + K++ +F+ Sbjct: 233 VQLPDYYVQEYIDNQQLIPLLTQFTESDDGIWALYPHNRHLSPKVRMLVDFL 284 >gi|77458595|ref|YP_348100.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382598|gb|ABA74111.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 313 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 146/296 (49%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++++++ I LE + +KL R R + T G+ Sbjct: 4 FDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLIQQLEARLRVKLLNRTTRKVNATADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ ++ + L ++ +P G+LR+ L +L L EF YP+IQI Sbjct: 64 VYYERVIKLLADMDDAETSLPGAAAQPKGRLRVDVPSPLANLILVPALPEFCARYPEIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +DI + DC +R + ++ SL+ RK+ + + YAAP YL P + Sbjct: 124 DMGVSDRIVDIIDENVDCVVRGGE-LRDQSLMARKVADLQLGVYAAPSYLARAGTPAHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G +P + + + + G ++ N+YLS + Sbjct: 183 ELEDSHHRVVGFLWARTGKPVPYALHNEHEDLQIK---GRHVLAVDDGNAYLSA---GLA 236 Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP Y+ K + NLV + ED +Y YP + KL+ F ++I Sbjct: 237 GLGVLWLPKYMSKAHEASGNLVPLFEDWRLDPMPLYVAYPPNRHISRKLRVFIDWI 292 >gi|27363815|ref|NP_759343.1| transcriptional regulator [Vibrio vulnificus CMCP6] gi|27359932|gb|AAO08870.1| Transcriptional regulator [Vibrio vulnificus CMCP6] Length = 294 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 10/260 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W+ + F VA SGSFT AA +L S +++SR++ LE +G+KL R R ++LTE Sbjct: 3 NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + L ++ + + P GKLRI + G+ + L +FL+ YP Sbjct: 63 AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIAPLLNDFLIRYPK 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+L N+ +D+ D A+RL + ++ SS + R+L H+H A P Y + P Sbjct: 123 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L HN + + E+ R I RI C +S + ++ + G G Sbjct: 182 TLSDLSSHNCLIGTHDHWRFKENHQ-----GRSIKVNGRIRC---SSGVVLLDAALKGIG 233 Query: 241 IALLPDYIVKDNPNLVRIME 260 + LPDY V ++ + R++E Sbjct: 234 LVQLPDYYVDEHLHAGRLIE 253 >gi|238752648|ref|ZP_04614120.1| Transcriptional regulator, LysR family [Yersinia rohdei ATCC 43380] gi|238709162|gb|EEQ01408.1| Transcriptional regulator, LysR family [Yersinia rohdei ATCC 43380] Length = 302 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 18/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AAE + L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFSRVAECGSFTRAAEMVGLPKSSVSQRISQLEKNLGIRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+ LG LL +F YPD+ ++++ Sbjct: 68 VHCQEMLQAAERADLALQRLKDNPSGRLRISIPAGLGATLLARLAADFQQRYPDVLLEVM 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + D A+R KP Q SSLI R+L + A+P YL ++LD Sbjct: 128 VSDTKVDLVEEGFDVALRTGKP-QDSSLIGRQLGYAPRYLLASPAYLAQHPPLTHPRQLD 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243 H +C+ W A + R E ++ L V + L + C L G GI L Sbjct: 187 TH----------RCIAHRAWQALILRRDDEFYRWQVPALHVTNNLLYARECALSGGGITL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ ++ N L+ ++ +Y YP N+ L F + + Sbjct: 237 LPAFLSREVVINRQLIAVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVV 286 >gi|306841612|ref|ZP_07474307.1| LysR family transcriptional regulator [Brucella sp. BO2] gi|306288303|gb|EFM59671.1| LysR family transcriptional regulator [Brucella sp. BO2] Length = 293 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 142/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P + Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKN 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I + +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIARADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|296101372|ref|YP_003611518.1| hypothetical protein ECL_01006 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055831|gb|ADF60569.1| hypothetical protein ECL_01006 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 301 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELTIFVAVVESGSFSRAAEQLGQANSAVSRSVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSVLQEMAAAETEIMETRSTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFASYRKIIASPQYIAEHGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I+C L NS ++ Q C+ G Sbjct: 180 ETVEELKQHLCLGFTE--PVSLN--TWPVACPDGQLHE--ITCGLSSNSGETLKQLCLEG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ +LV +M D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGDLVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|327479940|gb|AEA83250.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 307 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAETLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +S P G+LR+ L + +L L F YPDIQ+ Sbjct: 64 AYYERVVRLLADMDDAETSLSGASTLPRGRLRVDVPSPLARMILVPALPAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R I SL+ R++ + + YAAP YL+ P + Sbjct: 124 DMGVSDRRVDLIDENVDCVVR-GGDITDQSLVARRVGDLRLGVYAAPGYLERAGTPRHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G + P M V +G+ ++ N+YL+ + Sbjct: 183 ELENTHHRIVGFLWARAGKVFPYAMHGNGERVEV---LGQYVLAVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ K++ LV + E +Y +P + KL+ F +++ Sbjct: 237 GLGILWLPDYMAKEHLARGELVLLFEHWQLEPMPLYVAFPPNRHVSAKLRVFIDWV 292 >gi|221212117|ref|ZP_03585095.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221168202|gb|EEE00671.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 294 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRI-GALEDSTLIARALGAWKMIACASPAYLKRHGTPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 EL H + +G W VD G PR +Q N+ + + G Sbjct: 180 PAELANHTCLLYGR-----ERRVGWEFRVD---GAPRTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP +IV D LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPSFIVGAALDGGTLVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|294851074|ref|ZP_06791750.1| hypothetical protein BAZG_03207 [Brucella sp. NVSL 07-0026] gi|294821717|gb|EFG38713.1| hypothetical protein BAZG_03207 [Brucella sp. NVSL 07-0026] Length = 308 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 21/296 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ RKLV + YA YL+ P Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARKLVDYTLCLYAHRSYLEENGTPK 193 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYC 235 S ++L++H LI + +ED ++ + P IS +V+S L ++ Sbjct: 194 SPEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAV 242 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 243 RAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296 >gi|197336991|ref|YP_002157609.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197314243|gb|ACH63692.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 292 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 154/290 (53%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L VF VAR G+FT AA +L+ +QS++S++I+ LE +VGI LF+RHAR ++LT G Sbjct: 4 FDCLNVFTRVARLGTFTAAANELNTTQSAVSKKIAWLEKQVGITLFHRHARAISLTAGGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + R+ + ++ + +L++ SG L+++ L L EFL L+P++ + Sbjct: 64 QYLRLALNLIDEMNLVESQLRQEQTSISGTLKLSVPSAFSIQKLSVPLNEFLNLHPELSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI- 183 + + +K +D+ D AIR ++ S L + + + +A+P YL+ P+ I Sbjct: 124 DVSVSDKFVDLVESDIDIAIRAAY-LKDSGLKAKWFMDNELAYFASPDYLEK-HPPIEIA 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L +H +T+ P + FN I E ++ +S ++Q LG G+A Sbjct: 182 DDLAQHQCLTYSLSTPSNLWRFNDGKETKIKIKEQ----VRSDSPEMLVQMAKLGQGVAA 237 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P ++V+ + +L ++++ T +Y Y ++ + +++AF +FI Sbjct: 238 MPKWMVEHELKSGSLTQVLDQYKTVKLPMYMVYKDSEHQSQRIRAFIDFI 287 >gi|330936795|gb|EGH40952.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 298 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA +L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S L+ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWGLYPQQRHLSPKVRKLVDYL 286 >gi|312884169|ref|ZP_07743881.1| putative transcription regulator protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368217|gb|EFP95757.1| putative transcription regulator protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 311 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 151/296 (51%), Gaps = 15/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V GSF+ AA +L +++S++S++I+ LE E+G +L R R L+LTE G Sbjct: 4 FNTIPIFVAVVECGSFSAAAYKLCITKSAVSKRINLLEEELGTRLLNRTTRKLSLTEAGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + H + + + E +P G L++ + G + + EFL LYPD+ I Sbjct: 64 RYHEYVIQSLSLAKQGIDAVAELQGQPRGTLKVTVPMSFGIAHITPFISEFLALYPDVDI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+++ +D+ + D IR+ + S+LI R+L + + A+ +YLK LS + Sbjct: 124 NLSLEDRMLDLVQEGFDIGIRIGD-LPDSNLIARRLTSCNSVLCASDNYLKKNPPILSPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H+ I + C +W+ + R + + R+S +N+ +I Q + G+G Sbjct: 183 DLKHHDCIQYSYYQGGC----DWVLAKESKRFRILPKGRLS---INNSQAIRQATINGAG 235 Query: 241 IALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IA LP +IV D+ R I+ D P VY +P+ K++ F NF+ K Sbjct: 236 IANLPTFIVADDLKSGRLQVILSDYQLPQHGVYAVFPDKKHMPVKVRKFLNFMIDK 291 >gi|254785592|ref|YP_003073021.1| LysR family transcriptional regulator [Teredinibacter turnerae T7901] gi|237685205|gb|ACR12469.1| transcriptional regulator, LysR family [Teredinibacter turnerae T7901] Length = 329 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 140/288 (48%), Gaps = 6/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ V +GSFT A ++L LS++ IS+ IS +E + G++ F R R + TE G K Sbjct: 26 DGIKTIVAVLETGSFTAAGDRLGLSKALISKYISLMEQQYGVRFFNRTTRKIAPTEAGLK 85 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + + E G L+I+T++ G+ LL + EF+ +P++ + Sbjct: 86 YYEKAQIILNEFASLVDFVSEKKDSLKGSLKISTSVTFGEFLLIDKIPEFMRTHPELHLD 145 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L N ID+ + D A+R+ I S +LI RK+ A+P YLK P S E Sbjct: 146 INLSNHKIDLLEEGVDVALRISDRI-SPNLIARKITEFPFCLCASPTYLKAYGTPQSTAE 204 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H I + F +DR I P S + VNS +I + G GIALLP Sbjct: 205 LQDHKCIVDSNFRITNEWPFQTADALDRTIAVP--SAISVNSPRAIRDLAINGVGIALLP 262 Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + L I+E+ T SF+++ P K++ F F+ Sbjct: 263 KFVVYKDIEAGILTEILENQSTLSFSLHALIPHREYIPNKVRYFIEFL 310 >gi|218516956|ref|ZP_03513796.1| probable transcriptional regulator protein, LysR family [Rhizobium etli 8C-3] Length = 363 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/310 (27%), Positives = 149/310 (48%), Gaps = 20/310 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 3 DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE L + L E+ KP G L+I+ + GQ + + +FL ++P+IQ Sbjct: 63 RAYYNRCSEPLSHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKVFPEIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + N +D+ + D IR + ++ S+++ ++L + AAP YLK P Sbjct: 123 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPDYLKGRAPPSKP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 ++L+ H + L+ + W R + R+S + + ++ + G GI Sbjct: 182 EDLEDHRCV----LLNGRNGEGEWHLVSGRKSVDLRVSGPISSRDFDAVSAFTYRGHGIG 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---------- 289 LLP + LVR++ D +P V+ YP +L+ F + Sbjct: 238 LLPSTYCDEQIRRGELVRVLPDWSSPEIFVHAVYPTRRFLPLRLQVFLDALKAWKSPLWL 297 Query: 290 -IFLKARDWK 298 I L++RDW+ Sbjct: 298 PIALRSRDWR 307 >gi|229591355|ref|YP_002873474.1| LysR family transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229363221|emb|CAY50302.1| LysR family transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 299 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 139/288 (48%), Gaps = 19/288 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA + SFT A L +S S+I + I+ +E +G++LF+R R +TLT +G+ Sbjct: 7 LSVFVQVAETRSFTTAGRLLGVSSSAIGKSIARMEQRLGVRLFHRSTRSITLTSEGALFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E + EL E+ P GKLRI ++ + LL L +F+ YP+I++ + Sbjct: 67 ERSRRILAEVEAAERELTEACATPRGKLRI--SVPQVRGLLMPVLSDFMRAYPEIELDVD 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D IR KP + S L+ R L + P Y + P Q+L Sbjct: 125 FSDRMVDVIEEGFDAVIRTGKP-EDSRLMARHLGHYQLVLVGTPGYFREHGTPQHPQQLS 183 Query: 188 -----KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241 +H G L P W + EP + V++ + + + VL G GI Sbjct: 184 EHACLRHKFCATGKLEP-------WPLHLAPGASEPTLRTPLVSTTIESLNHVVLEGLGI 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A LPDY+V L R+++D I + + +P + T K++ F Sbjct: 237 ACLPDYMVNHAVREGRLQRVLDDCIEHRGSFWMLWPSSRHATAKVRVF 284 >gi|170734917|ref|YP_001774031.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820955|gb|ACA95536.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 305 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 12/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA +S +++SR ++ LE +G +LF R +R L+LTE G Sbjct: 6 DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+Y + E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D A+R+ + SSL+ R+L + AAP YL+ P Sbjct: 126 IDLHLSDASVDLIADGFDAALRIAA-LPDSSLVARRLCAVTQFVVAAPQYLRREGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 +EL + + + F A + P G L+V + +++ + G Sbjct: 185 RELADRPCLPYAYRARSAVWRFTNDAGDEESVMPTGP-----LRVTNADALLPTLLDGLA 239 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LP++I + + L I+ D + +YF P A K+ A ++ Sbjct: 240 IAELPEFIAGEYLADGRLEAILPDWSLTTGGLYFVTPSARARPAKVTALSDYF 292 >gi|162149547|ref|YP_001604008.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209544785|ref|YP_002277014.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161788124|emb|CAP57728.1| putative transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] gi|209532462|gb|ACI52399.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 5/288 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D R+F V + SFT AA+ L + +SS+S I LE VG +L R R + T GS Sbjct: 5 DLFRIFARVVETASFTRAADTLGMPRSSVSTAIRDLEARVGTRLLSRTTRIVAPTPDGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + + + P G LR +G+ ++ L +FL YP I ++ Sbjct: 65 FYEQCVRLIADVEDAENLFRRDAAGPRGVLRADMPGRIGRLIVAPALPDFLARYPAIDVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D DCA+R+ P+ S+LI R+L T+ + A+P YL PL+ + Sbjct: 125 LGVTDRAVNLVEDGIDCALRV-GPLHDSALIARRLGTLRLINVASPAYLARHGVPLAPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + + +ED+ W D P + VNS + + C+ G G+ +P Sbjct: 184 LPGHCAVRYASPTTGRIEDWEWTED-DTPRTLALPGRVTVNSAEAQIACCLAGLGLIQVP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V+ D LV ++ D + YP +++AF +++ Sbjct: 243 AYDVRPHLDAGTLVEVLPDWRAAPLPMSVLYPHRKHVAHRVRAFIDWL 290 >gi|84684474|ref|ZP_01012375.1| transcriptional regulator, LysR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667453|gb|EAQ13922.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2654] Length = 294 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 20/289 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + DW +R F VA +GS + AA L SQ ++ RQ+ +ET +G++LF RHA+GL+LTE Sbjct: 3 NLDWSLIRAFLAVAETGSLSAAARTLGSSQPTVGRQVREVETALGVELFQRHAKGLSLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + + + + ++P+G +RI ++ + +L L P Sbjct: 63 TGAAMLSAAKRMRDSVGEIALIAAGQDMRPTGTVRITASVIVAHFVLPQILARLRRDEPG 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-----MHAYAAPHYLKN 176 I+I+L+ + ++ AD A+R+ +P Q +VT+H + YAA YL Sbjct: 123 IEIELVATDSSDNLLFREADIALRMYRPDQLD------MVTLHVTDLPLGIYAAKSYLDR 176 Query: 177 CREPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P ++++ K + + + DL+ + M W VDR R Q ++ I Sbjct: 177 VGRPDTVEDAFKLDWVGYDRSDLMLRGMRRLGW--AVDRTFFATRTDD-QAGNWQLIRAG 233 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 C G GIA + +D P + R+ D+ PS V+ EA++ T ++ Sbjct: 234 C--GIGIAQI--ATAQDAPEVERLFPDMALPSLPVWLTAHEAMRRTPRI 278 >gi|269962155|ref|ZP_06176509.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3] gi|269833239|gb|EEZ87344.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3] Length = 291 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L +T E+ + SGK++I+ +L + ++ F+ YPDI I+ Sbjct: 64 FYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ + D R+ P + SSLI RK+ + A+P YL P +E Sbjct: 124 LTTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLSANPAPNHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LSNHSLLKGSPLIKWTLINSKGESVVNVERGR-----FQANALNVVRSSCSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K ++ +LVRI+ D +Y Y K++ F +F+ Sbjct: 238 DVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|170724740|ref|YP_001758766.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810087|gb|ACA84671.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 292 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 146/275 (53%), Gaps = 11/275 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT A+++L +S + +SRQ+S LET + KLF+R R ++ TE Sbjct: 2 FNWEGISEFVAVAEAESFTKASQRLGISTAQVSRQVSALETRLATKLFHRTTRKVSTTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V L+ + + P G L+I + G+ + + +F YP++ Sbjct: 62 GRVYYQHCRQVLDGLDEAERAITNLQSSPRGLLKITAPVTYGEMTIAPLINDFAAKYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ L N+ +D+ + D AIRL + ++ SS++ ++L + + A+P YL P S Sbjct: 122 EVKINLTNQKLDLIDEGYDLAIRLGQ-LEDSSMMAKRLSSRTQYVCASPSYLSTFGIPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL++HN + G + ED V R G +SC NS +++ + G GI Sbjct: 181 LSELEQHNCL-LGTMDYWRFEDNGKTRNV-RVKGN--LSC---NSGHALVDAAIKGIGII 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 LPDY ++ ++ LV ++E +P ++ YP Sbjct: 234 QLPDYYLQSFIEDGQLVPLLEQNRSPEEGIWALYP 268 >gi|309778790|ref|ZP_07673563.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308922498|gb|EFP68122.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 323 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 146/286 (51%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA+ L L +++++ + LE +G++L +R R + +T G+ + Sbjct: 16 MQVFTRVVEASSFTKAADSLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 75 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE T+ +SS G LRI +G+ LL +++F YPD+Q+++ Sbjct: 76 ERCVRLLGDLEETEAAFSQSSSGARGTLRIDVPASIGKRLLVPRIRDFHEAYPDLQLEIG 135 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DCA+R + +Q SSL+ R++ + M A+P YL C P ++++L Sbjct: 136 MSDRTVDLVQEGVDCAVRGGE-LQDSSLVARRIGQLSMVNCASPEYLARCGTPKTLEDLQ 194 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + D++++ + I + R S + VN S + + G G+ + Sbjct: 195 DHTAVNYFSARNGRRMDWDFVIDGQKQIHKVR-SMVSVNDAESAVACGLHGLGLLQTSRF 253 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V + + LV ++ D I+ V YP + K++ F +++ Sbjct: 254 LVYEHLMSGALVEVLPDYISEPVPVSVVYPHNRHLSPKVRVFVDWV 299 >gi|212634907|ref|YP_002311432.1| regulatory protein LysR:LysR substrate-binding [Shewanella piezotolerans WP3] gi|212556391|gb|ACJ28845.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella piezotolerans WP3] Length = 289 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 151/292 (51%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT AA +L +S + +SRQ+S LET + KLF+R R +++TE Sbjct: 2 FNWEGVSEFVAVAETESFTKAAGRLGISTAQVSRQVSTLETRLAAKLFHRTTRKVSVTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V L+ + + P G L+I + G++++ + +F+ YP++ Sbjct: 62 GRIYYQHCRQVLDGLDEAERAITNLQTTPRGLLKITAPVTYGESMIAPLINDFITQYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++Q+ L N +D+ + D AIRL + ++ SS++ ++L + H A+P Y+ P + Sbjct: 122 EVQINLSNLKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQHVCASPSYVSTYGLPHT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 + EL++HN + G L D+ W R+ L NS +++ + G GI Sbjct: 181 LSELEQHNCL-IGTL------DY-WRFQEKGKARNVRVKGNLSCNSGHALVDAAIKGLGI 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY V ++ L+ ++E+ ++ YP + K++ +F+ Sbjct: 233 IQLPDYYVNSFIESGELMSLLENNRQADEGIWALYPHNRHLSPKVRMLLDFL 284 >gi|205351587|ref|YP_002225388.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271368|emb|CAR36161.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626615|gb|EGE32958.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 304 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAGR-LTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 ++++L +H + F + P + W +A D + E + C + NS ++ Q C+ G Sbjct: 180 ETVEQLKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|224826896|ref|ZP_03699995.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224600883|gb|EEG07067.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 295 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 13/284 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA SGSF+ AAE+L +S S +SRQ+ LE + +LFYR R ++LTE G Sbjct: 4 WEGIAEFVAVAESGSFSRAAERLRVSSSHVSRQVMRLEERLQARLFYRSTRKVSLTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + + P G LR+ + G+ + + +F+ +P + + Sbjct: 64 TFFSHCQQLQEARDEAFLAVNALHSSPKGLLRMTCAVTYGERFVVPLVNDFMAGHPQLAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L N+ D+ + D AIRL + + SSL+ +L MH AAP YL + P ++ Sbjct: 124 EIELTNRTADLLHEGFDLAIRLGQ-LADSSLVATRLAPRTMHLCAAPAYLAHHGTPHTLG 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL +H + + W +D RP + NS +++ + G G+ Sbjct: 183 ELARHQCLIGTSTV--------WSFRLDGRPWHFKPQGRWRCNSGQAVLDAALRGFGLCQ 234 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 LPDY V++ LV ++ P+ V+ YP+ + KL+ Sbjct: 235 LPDYYVREPLRQGRLVELLPAHTPPNTAVWAVYPQQRHLSAKLR 278 >gi|149907718|ref|ZP_01896465.1| transcriptional regulator, LysR family [Moritella sp. PE36] gi|149809388|gb|EDM69317.1| transcriptional regulator, LysR family [Moritella sp. PE36] Length = 306 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 145/297 (48%), Gaps = 14/297 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF V +GSFT AA++L + ++++SR++S LE ++ I L R R LT Sbjct: 6 MEHDLNDMMVFLAVVETGSFTLAADRLGIPKANVSRKVSRLEQQLNITLLERSTRSQHLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + V+ +L+ + E G+L+I +I GQ +L+ L F+ YP Sbjct: 66 EAGKRYLIHCKRVHEELDLATASVSELLHSYKGELKIGASISTGQQILRPALATFMHQYP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I +QL L N+ +D + D IR+ + + S LI +KL T +++P YL P Sbjct: 126 EINVQLNLVNRRVDFIEEGFDVVIRIGQ-LADSMLIAKKLGTATRTLFSSPAYLAKHGTP 184 Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCV 236 + +L H L+ P + N ++T +PR L V+ + + Q + Sbjct: 185 HVVSDLFTHQLLVMN---PTNNDPTLNLVSTAGEAFSVNCKPR---LLVDDFAILKQSLI 238 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA+LPDY+ +++ LV I+ + VY YP K+K F F+ Sbjct: 239 DGLGIAVLPDYMSREDVAAGRLVNILPNWGMEPVDVYALYPRHRAKIPKVKVFLEFV 295 >gi|153833886|ref|ZP_01986553.1| AphB/LysR family [Vibrio harveyi HY01] gi|156975361|ref|YP_001446268.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116] gi|148869828|gb|EDL68802.1| AphB/LysR family [Vibrio harveyi HY01] gi|156526955|gb|ABU72041.1| hypothetical protein VIBHAR_03092 [Vibrio harveyi ATCC BAA-1116] Length = 291 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L +T E+ + SGK++I+ +L + ++ F+ YPDI I+ Sbjct: 64 FYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNAFMKQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ + D R+ P + SSLI RK+ + A+P YL P +E Sbjct: 124 LTTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLNANPAPNHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LSNHSLLKGSPLIKWTLINSKGESVVNVERGR-----FQANALNVVRSSCSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K ++ +LVRI+ D +Y Y K++ F +F+ Sbjct: 238 DVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|163858827|ref|YP_001633125.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163262555|emb|CAP44858.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 352 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 151/290 (52%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L L +++++ + LE +G++L R R ++LT G+ Sbjct: 19 FQAMQVFVRVVDANSFTRAADSLALPRTTVTTAVQNLERRLGVRLLNRTTRRISLTPDGA 78 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + ++E T+ QE++++P GKLRI +G+ +L +L EF YPD+++ Sbjct: 79 AYYEHSTRILAEVEETEACFQEAALRPKGKLRIDVPASIGRLILIPSLCEFHTRYPDVEL 138 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC IR + ++ SSL+ R++ T + AAP YL+ P +++ Sbjct: 139 VLGMGDRRVDMVQEAVDCVIRGGE-LEDSSLVARRIGTFQVLTCAAPSYLERQGMPHTLE 197 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L H + + + + NW +D E + C+ VN + + + + G G+ Sbjct: 198 DLKSHYAVHY--FSSRSGRNCNWDFVIDGKTREVDVPGCVSVNDWSAHLACALQGFGLVQ 255 Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + L+ ++ + YP++ + + K++ F +++ Sbjct: 256 TARFMALPHLQSGELIEVLPQWKPRPVPISLLYPQSRQLSPKVRVFSDWV 305 >gi|254253418|ref|ZP_04946736.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124896027|gb|EAY69907.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 305 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 137/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA +S +++SR ++ LE +G +LF R +R L+LTE G Sbjct: 6 DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+Y + E + +E SV+P G +R+A + G + L F YP + Sbjct: 66 RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSYGLRWVAPLLPGFFRAYPGVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D A+R+ + SSL+ R+L + A+P YL+ P Sbjct: 126 IDLHLSDASVDLVADGFDAALRI-AALPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +EL +++ + F A + P+ L+V + +++ + G IA Sbjct: 185 RELVDRPCLSYAYRARSAVWRFTNDAGEEEPVMP--AGPLRVTNSDALLPTLLDGLAIAE 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++I + + L I+ D +YF P A K+ A ++ Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYF 292 >gi|323493354|ref|ZP_08098477.1| LysR family transcriptional regulator, transcriptional activator AphB [Vibrio brasiliensis LMG 20546] gi|323312440|gb|EGA65581.1| LysR family transcriptional regulator, transcriptional activator AphB [Vibrio brasiliensis LMG 20546] Length = 291 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE + ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEESLNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + ++L E+ + +GK+RI +L + ++ F+ YPDI I+ Sbjct: 64 FYAECSPLLNRLTLAAEEITDECRGAAGKIRITAPSNLTKRMMMPMFNAFMSQYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L N+ + D R+ P + SSLI RK+ ++ A+P YLK P +E Sbjct: 124 LTTSNQADQLDPTEWDVIFRV-GPQRDSSLIARKISSVADILVASPEYLKAHPAPTHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+L+ L+ + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LHQHSLLKGAPLLKWQLSNNSGETVVNNDKGR-----FQANTLNVVRSACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D +++ ++ +LVR+++D +Y Y K++ F +F+ Sbjct: 238 DVMLREYIEDGSLVRVLQDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|299067896|emb|CBJ39109.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 305 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 21/286 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L +F V +GSFT AA +L L +SS+SR I+ LE ++ ++L R R L LT+ Sbjct: 1 MDLNQLALFVRVVEAGSFTAAAVRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L++V S ++E E P GK+R+ D+G+ L+ + F+ YPDI Sbjct: 61 GQSLYQVASHALEEIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L +++D+ + D A+R+ + + SSL+ R L + + +A+P YL+ P + Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGMPQA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY-----LSIMQYCVL 237 +++L HN + F + W R +G + + V + LS ++ + Sbjct: 180 VRDLSHHNCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231 Query: 238 GS-GIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 S GI LP Y + + N P LVR++ + T ++ P A Sbjct: 232 SSAGIGPLPLYAGGVARANAPLPRLVRVLPEYATSGEPLHLVTPTA 277 >gi|162456631|ref|YP_001618998.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161167213|emb|CAN98518.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 343 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 134/276 (48%), Gaps = 19/276 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++ +F V + GSFT AA + + +S++SR+IS LE+ VG +L R R L+LT+ G Sbjct: 48 DEIVLFTRVVQGGSFTAAATAVGMPKSTVSRKISDLESRVGARLLQRTTRTLSLTDVGRV 107 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + LE ++ + + P G LR+ T L ++L + E+L L+PD+Q+ Sbjct: 108 YYEHCVRIVAALEEAELAVSQLQSTPRGLLRV--TAPLAFSVLGPIVAEYLRLFPDVQVD 165 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ ++ +D+ + D A+R +SL+ R+L + AAP + EP I E Sbjct: 166 LVCTDRRVDVVEERFDLALRAGA-TPDTSLVARRLGAVRRRLVAAPEVKRALGEPNDIAE 224 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241 L H I F E +W I E PR L VN Y + G G+ Sbjct: 225 LADHPCIVFAP------EGSSWELRSGPKIAEITVHPR---LVVNDYEMLRSVARAGFGV 275 Query: 242 ALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYP 274 ALLP+Y+ ++ R+M + + P V+ YP Sbjct: 276 ALLPEYLCAEDLAAGRLMPVLASWSAPEVPVFALYP 311 >gi|90414769|ref|ZP_01222738.1| putative transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90324135|gb|EAS40717.1| putative transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 18/290 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AAEQ+ L++S +S++I+ LE ++G++L YR R LTLTE G Sbjct: 5 DDFLIFYHLIEQGSFSKAAEQVGLTKSVVSKRITRLEQDLGVQLVYRTTRKLTLTEAGEV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EVY+ ++ + + +G +R+ G+ LL + EF YP+I I Sbjct: 65 FFGHAREVYYSVQNAEEAMSGLGESLTGTIRLTVPTISGELLLPKAISEFSAKYPEIHID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI + D AIR + + SS I R+LV H AP Y P E Sbjct: 125 MDLDNRFVDIVKEGFDLAIRTGE-LPDSSFIARRLVDAHWVICGAPEYFALNGVPKVASE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L HN + + E WL GE + ++VN + + + + G Sbjct: 184 LVNHNCLAYSYQETGAKE---WLFK-----GENKPYTIKVNGNFTTNNASALRRAALFGQ 235 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ +P +V ++ +L+ ++++ + +Y YP K+K F Sbjct: 236 GLVYVPKVLVAEDLKAGSLIEVLQEQVAKCLGIYAMYPYTRHQPIKVKLF 285 >gi|17986502|ref|NP_539136.1| LysR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|225853275|ref|YP_002733508.1| LysR family transcriptional regulator [Brucella melitensis ATCC 23457] gi|256045431|ref|ZP_05448323.1| transcriptional regulator, LysR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|17982104|gb|AAL51400.1| transcriptional regulatory protein, lysr family [Brucella melitensis bv. 1 str. 16M] gi|225641640|gb|ACO01554.1| transcriptional regulator, LysR family protein [Brucella melitensis ATCC 23457] Length = 308 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPK 193 Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 S ++L++H LI + DL+ P+ D+ +V+S L + Sbjct: 194 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 239 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 240 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296 >gi|146342957|ref|YP_001208005.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195763|emb|CAL79790.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 302 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 12/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ + +F V SF AA++L LS++S+S+ +S LE +G +LF R +R L LT+ G Sbjct: 6 DFEAMAIFAKVVELRSFAGAAQELSLSKASVSKAVSRLEERLGTRLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L +++ E + E S+ P G +R A + G + L FL YP++ Sbjct: 66 QRLSERAAQLLADGEAAETEALAQSLTPRGLVRFAVPMTFGVKKIAPLLPAFLEQYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + + +D+ + D A+R+ + + SSL+ R+L + + AAP YLK P Sbjct: 126 IDLHMSDATVDLIGEGFDLALRIAR-LPDSSLVARRLCPMPRYTVAAPSYLKRHGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + L + + A RP G+ L+VN+ +++ + G G Sbjct: 185 MHLAEHKCFGYAYLSTAGVWHYTNAAGEPASVRPAGQ-----LRVNNGEALLPAVLAGLG 239 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LPD+IV D + + ++E P ++ P +++ F+ Sbjct: 240 IADLPDFIVGDAIASGEVEVVLEGWSQPEGAMHLVMPPGGPRPARVEVLSEFL 292 >gi|114564597|ref|YP_752111.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114335890|gb|ABI73272.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] Length = 289 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 152/292 (52%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT AA++L +S + +SRQ+S LET + KLF+R R ++++E Sbjct: 2 FNWEGVSEFVAVAEAESFTKAAKRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVSEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V LE + + P G L+I + G+ L + +F+ YP++ Sbjct: 62 GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEKTLAPLVNDFIAKYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ L N+ +D+ + D AIRL + ++ SS++ ++L + + A+P Y+ P S Sbjct: 122 EVKINLTNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLCSRTQYVCASPDYVSTFGIPHS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 + EL++HN + G L D+ W + R+ L NS +++ + G GI Sbjct: 181 LSELEQHNCL-LGTL------DY-WRFQENGKTRNVRVKGNLTCNSGHALVDAAIKGIGI 232 Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+ V ++ LV ++E P ++ YP + K++ +++ Sbjct: 233 IQLPDHYVLPFLEDGQLVPLLEQNRQPKEGIWALYPHNRHLSPKVRMLLDYL 284 >gi|293394639|ref|ZP_06638931.1| LysR family substrate-binding transcriptional regulator [Serratia odorifera DSM 4582] gi|291422765|gb|EFE96002.1| LysR family substrate-binding transcriptional regulator [Serratia odorifera DSM 4582] Length = 306 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 145/278 (52%), Gaps = 16/278 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F ++ GSF+ AAE ++ S IS++I LE +G +L YR R LTLTE G + Sbjct: 9 NDLILFALIVECGSFSKAAESAGITSSVISKRIGRLEKSLGARLLYRTTRSLTLTENGQE 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+R + +++ + E S +G +R++ G+ LL ++ EF +PD++++ Sbjct: 69 LYRHARTISSQMQEALYAVSERSEALTGTIRMSVPTISGELLLSESVAEFCTQHPDLKVE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ +D+ + D AIR + SSLI R ++ +P YL++ +P + E Sbjct: 129 MRLENRFVDLVNEGIDLAIR-TGTMPDSSLIARHILDSRWVIVCSPSYLEHHPQPTTTAE 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L HN +T+ + NWL V +P G+ +I+ LQVN LS I + + G Sbjct: 188 LLNHNCLTY---TYQESGSANWL--VKQPTGD-QIAELQVNGNLSANNARAIRKAVIGGY 241 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 GIA++P +V ++ L+ I+ VY YP Sbjct: 242 GIAMVPRCMVYEDLQQGKLLEILAGHCGKVLGVYAVYP 279 >gi|123441267|ref|YP_001005254.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088228|emb|CAL11016.1| putative LysR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V GSF+ AAEQL + S +SR + LE ++G+ L R R ++LT Sbjct: 1 MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R + ++ T + EL ++ + P G LRI + +++ + EF YP Sbjct: 61 QEGEHYFRRVQNILREMATAENELLDNQLNPKGLLRIDAATPVVLHIIAPLMAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ I++ D AIR+ +Q S+L RKL+T + H A+P YLK P Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHILASPAYLKQYGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L+ H + F DL P W LA D + E + S L N+ + + C+ G+ Sbjct: 180 QTAADLEHHLCLGFNDL-PTLNR---WPLAGADGQLYEIK-SDLASNNGETQRRLCLEGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++++ + +L+ I+ + V P VY+ +A+ N +L+ F +FI Sbjct: 235 GIACLSDFMIQQDLQRGDLIAILREHTLPVAMPINAVYYS-DQAVSN--RLRCFIDFI 289 >gi|330448395|ref|ZP_08312043.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492586|dbj|GAA06540.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 13/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F V +SG F AA+ + S S +S++I LE +G++L R R ++LT +G Sbjct: 7 FDGIALFVQVVKSGGFGAAAQAMGHSNSYVSKEIVKLENRLGVRLLNRTTRSISLTPEGK 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E + +S+V P G L+I+ + G++ L+ +L YPD+ I Sbjct: 67 SYYQECLQLISDAEQAVAHITQSTVAPKGTLKISCPVWFGKHYLKDVFSAYLARYPDVVI 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +K ID+ D D IR + SSLI +++ + + A+P Y+ P+ Sbjct: 127 DLDMSDKAIDVIGDGYDLVIRASAKLDESSLICKRIYSSRICTVASPEYIAKYGRPIHPA 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSG 240 EL H+ + +L + D+ +D+ + + Q N+ +S+ C G G Sbjct: 187 ELSSHHCFCYSNLKKSNIWDY-----MDKAGNQTSVDVHQRIRSNNTEMSLALVCN-GDG 240 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP++ ++ L+ + ED + P VY YP K++ F + I Sbjct: 241 IIRLPEFYIEQQIKTGELILLFEDYVFPMVDVYALYPTRKHLASKVRCFLDLI 293 >gi|161523076|ref|YP_001586005.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348098|ref|YP_001941294.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160346629|gb|ABX19713.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189338236|dbj|BAG47304.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 294 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRI-GALEDSTLIARALGAWKMIACASPAYLKRHGTPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 EL H + +G W VD G PR +Q N+ + + G Sbjct: 180 PAELANHTCLLYGR-----ERRVGWEFRVD---GAPRTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP +IV D LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPSFIVGAALDGGALVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|270263131|ref|ZP_06191401.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042819|gb|EFA15913.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 308 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 142/280 (50%), Gaps = 9/280 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + + VF +GSF AA +LHLS+S++ + I+ LE + ++LF+R R L+LT Sbjct: 1 MTDRLNGISVFVTAVGAGSFALAANRLHLSRSAVGKTIARLEQRLSVRLFHRTTRSLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G+ + ++ T + L+ + SG+LR+ + G+ + L E +P Sbjct: 61 DDGALFYERCLRALEEIRTAETLLESGKREVSGRLRVTMPVLFGRICIAPLLTELAREHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L +++ +D+ D D AIR + SS L+ R+L M AAP YL+ EP Sbjct: 121 GLELELSFNDRVVDLIEDGFDLAIRNGELGNSSGLVARRLGNHRMALCAAPAYLQRRGEP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLG 238 +I++L +H+ + + + NWL + + + LQ++ +I+ V G Sbjct: 181 QNIEQLAQHDAVAY----VRAGVVRNWLIPEADGVTREMMPGTRLQMDDLQAIVDAAVAG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 GIA LP ++V+ LVR+M D F + +P+ Sbjct: 237 FGIAWLPCWLVRGQLIKGELVRVMRDRPGLFFDAHAVWPQ 276 >gi|119385959|ref|YP_917014.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376554|gb|ABL71318.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 297 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 135/276 (48%), Gaps = 11/276 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR SFT AA +L +SQS++S+ I LE +GI+L R R ++ TE G Sbjct: 5 NFNALATFATVARERSFTKAAAKLGISQSALSQSIRNLEERLGIRLLTRTTRSVSPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L S + ++ET +L KP+G +RI T ++LQ L FL YPDI+ Sbjct: 65 ERLLTTISPKFDEIETALADLSAMRDKPAGTIRITTGEHPAVSILQPALATFLPEYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI+D DI D +RL + + + R + M A+P Y ++ P + Sbjct: 125 VELIVDYGLTDIVAQGYDAGVRLGEQLAKDMVAVRIGPEMRMAVVASPTYFEHRPIPQTA 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 ++L HN I+ +P F W D + R V + L + C L G GIA Sbjct: 185 EDLIAHNCIS--SRLPTYGGIFQWGLEKDGHEVKVRSEGQLVLNTLGLRVACALDGLGIA 242 Query: 243 LLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273 LP+ YI + L+R++ED P F Y Y Sbjct: 243 YLPEDQALPYIAEG--RLIRVLED-WCPRFPGYHLY 275 >gi|256114406|ref|ZP_05455131.1| transcriptional regulator, LysR family protein [Brucella melitensis bv. 3 str. Ether] Length = 308 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGPTLTH 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPK 193 Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 S ++L++H LI + DL+ P+ D+ +V+S L + Sbjct: 194 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 239 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 240 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296 >gi|152998913|ref|YP_001364594.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|151363531|gb|ABS06531.1| transcriptional regulator, LysR family [Shewanella baltica OS185] Length = 298 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 137/277 (49%), Gaps = 13/277 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A+++L LS+S++S++I+ LE +GI+L +R R L+LTE G+ Sbjct: 4 FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E P G LRIA + G+ + + EFL YP IQ+ Sbjct: 64 RYFDYVRPAVKLAADGLDAISELQQAPQGSLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RK+ A+P YL P + Q Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHSAPQTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L +HN + + + W T P G RI QVN+ +I Q + G GI Sbjct: 183 QLSQHNCLFYSYF----RDGVEW--TFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275 A LP ++V+ + R ++ D P +Y YP+ Sbjct: 237 ANLPHFMVEADLQTGRLQALLTDHPLPEHGIYAVYPQ 273 >gi|159186134|ref|NP_356288.2| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141268|gb|AAK89073.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 299 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 131/257 (50%), Gaps = 5/257 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D R+F V SFT AA+ L + +SS+S + LE VG +L R R ++ TE GS Sbjct: 5 DLFRIFTRVVDCASFTRAADTLGIPRSSVSAAVQELEGRVGARLLNRTTRKVSPTEDGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E T+ ++++ +PSG+LRI +G+ ++ L +FL LYP I I Sbjct: 65 FYERCQRLIADVEDTENLFRQTAAQPSGRLRIDVPGRIGRLVIAPALPQFLDLYPQIDIS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ D DC +R+ P+ S LI R + + + A+P YL P + + Sbjct: 125 LGVTDRAVDLVEDNIDCVLRV-GPLSDSGLIARPIGKLRLINVASPAYLAQYGAPKTPHD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + + +E++ W+ D P S + VN+ + + C+ G G+ +P Sbjct: 184 LSRHWAVNYASPSSGRVENWEWIEN-DALHSVPMRSRVTVNNAEAYIACCLAGLGLIQIP 242 Query: 246 DYIVK---DNPNLVRIM 259 Y V+ ++ L+ +M Sbjct: 243 AYDVRLHLESGELIEVM 259 >gi|270262453|ref|ZP_06190724.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043137|gb|EFA16230.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 306 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 150/297 (50%), Gaps = 13/297 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ ++ + +F V GSF+ A ++L +++S++S++I+ LE +G++L +R R L+LT Sbjct: 1 MTDNFAAIPLFVAVVECGSFSAAGQRLGITKSAVSKRITQLEGSLGVQLLHRTTRSLSLT 60 Query: 61 EQGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 E G + R V + E LQ +P G LR++ + G+ + + FL Sbjct: 61 EAGEQYFGYARNACAVAQEGEDAITRLQG---QPQGILRLSVPMVFGRLHIAPLIPVFLA 117 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 P+++I +++D+K +D+ D AIR+ + + SSLI R++ + AAP YL C Sbjct: 118 ACPEVEINMMMDDKLVDLVEGGYDLAIRIGR-LADSSLIARRIAPCYSVLCAAPAYLTRC 176 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + +L +HN + + F R +PR + QVN+ ++ + + Sbjct: 177 GTPKDLAQLAQHNCLFYSYYRAGSEWQFQGPEGAVR--FQPRGN-YQVNNSEALREALLA 233 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ +P +IV D+ L+ ++ D P +Y YPE K+ AF +F+ Sbjct: 234 GLGVCQMPTFIVGDDLAQGRLIELLPDHKLPEHAIYAVYPERKHVPAKVMAFVDFLL 290 >gi|296116017|ref|ZP_06834637.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977371|gb|EFG84129.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] Length = 302 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 140/268 (52%), Gaps = 27/268 (10%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++VF VA +GSF+ AA L ++ S++S+ I +E +G++L R R L+LT++G Sbjct: 7 EMQVFVRVAEAGSFSEAARHLLMTPSTVSKLIGRMEERLGVRLIERSTRRLSLTDEGRLF 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ + +L + E+ + SG +R++ ++ G ++ L EF YP++ + L Sbjct: 67 HERSAALLAELNDIEREVCHGAGGASGIVRVSASVPFGVLGIEPLLPEFWRTYPNVIVDL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ +D D A R+ P+ SSL+ RK+ A+P YLKN P++I +L Sbjct: 127 SLSDEIVDLYLDRTDIAFRV-GPLTDSSLLARKIGVARRQIVASPDYLKNHGTPITIDDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLA----------TVDRPIGEPRISCLQVNSYLSIMQYCV 236 + HN + F +F A VDR +G L N+ ++ + + Sbjct: 186 NHHNCLGF---------NFRRAAPVWPLREGRRIVDRMVG----GSLLANNGETVRRLVL 232 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMED 261 G G+A L D+ V+D+ +LV ++ D Sbjct: 233 AGVGLARLGDFHVRDDIAHGHLVEVLAD 260 >gi|54309397|ref|YP_130417.1| LysR family transcriptional regulator [Photobacterium profundum SS9] gi|46913833|emb|CAG20615.1| putative transcriptional regulator, LysR family [Photobacterium profundum SS9] Length = 325 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 18/290 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA+Q+ L++S +S++I+ LE ++G++L YR R LTLTE G Sbjct: 30 DNFLIFYHLIEQGSFSKAADQVGLTKSVVSKRITRLEQDLGVQLVYRTTRKLTLTEAGEV 89 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EVY+ ++ + + +G +R+ G+ LL + EF YP+I I Sbjct: 90 FFGHAREVYYSVQNAEEAMSGLGESLTGTIRLTVPTISGELLLPKAISEFSAKYPEIHID 149 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI + D AIR + + SS I R+LV H AP Y P E Sbjct: 150 MDLDNRFVDIVKEGFDLAIRTGE-LPDSSFIARRLVDAHWVICGAPEYFARNGVPKIASE 208 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239 L HN + + E WL GE + ++VN ++ + + G Sbjct: 209 LVNHNCLAYSYQETGAKE---WLFK-----GENKPYTIKVNGNFTTNNASALRRAALFGQ 260 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ +P +V ++ +L+ ++++ + +Y YP K+K F Sbjct: 261 GLVYVPKVLVAEDLKAGSLIEVLQEQVAKCLGIYAMYPYTRHQPIKVKLF 310 >gi|83745678|ref|ZP_00942736.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207724811|ref|YP_002255208.1| hypothetical protein RSMK03208 [Ralstonia solanacearum MolK2] gi|83727755|gb|EAP74875.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206590036|emb|CAQ36997.1| hypothetical protein RSMK03208 [Ralstonia solanacearum MolK2] Length = 314 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA+ L L +++++ + LE +G++L +R R + +T G+ + Sbjct: 7 MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE T+ +S+ G LRI +G+ LL +++F YPD+Q+++ Sbjct: 67 ERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPDLQLEVG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DCA+R+ + +Q S+L+ R++ + M A+P YL P ++++L Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLARYGTPKTLEDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + + P+ +W +D G+ +I S + VN S M + G G+ Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALYGLGLLQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + LV ++ D I+ S V YP + K++ F +++ Sbjct: 241 TARFLAYEHLMSGQLVEVLPDYISESLPVSVIYPHNRHLSPKVRVFVDWV 290 >gi|260596398|ref|YP_003208969.1| hypothetical protein CTU_06060 [Cronobacter turicensis z3032] gi|260215575|emb|CBA27796.1| hypothetical protein CTU_06060 [Cronobacter turicensis z3032] Length = 305 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 20/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA +GSFT AA++ L +SS+S++IS LE VG++L R R L+LT G Sbjct: 8 MALFALVAETGSFTAAAQKAGLPKSSVSQRISQLEAHVGLRLLNRTTRTLSLTFAGEHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI + +G LL EFL YPDI +++ Sbjct: 68 VHCREMLDASERADLAVQRLRDNPSGRLRITSPAGIGATLLARMNAEFLARYPDITLEVF 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ M+ D A+R KP Q SSLI RK+ + A+P YL +L Sbjct: 128 ISDDVRDLVMEGFDVALRTGKP-QDSSLIGRKIGHCPRYLLASPAYLAQHPPLTHPAQLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGIA 242 +H +I WL DR + CL Q ++ L + + G+G+ Sbjct: 187 EHRVIVHRAWT-------EWLLQRDREL----YRCLLNQMHQTDNLLYARESALAGAGVT 235 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP +++ D L+ I+ + +Y YP N L ++ NF Sbjct: 236 LLPAFLLDDTLKQGALINILPEWTVTGNDLYLVYPGRKLNAPALVSYINF 285 >gi|148253183|ref|YP_001237768.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405356|gb|ABQ33862.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 302 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 142/293 (48%), Gaps = 12/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ + +F V SF AA++L LS++S+S+ +S LE +G +LF R +R L LT+ G Sbjct: 6 DFEAMAIFAKVVELRSFAGAAQELSLSKASVSKAVSRLEERLGTRLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L +++ E + E S+ P G +R A + G + L FL YP++ Sbjct: 66 QRLSERAAQLLADGEAAETEALAQSLTPRGLVRFAVPMTFGVKKIAPLLPAFLEQYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + + +D+ + D A+R+ + + SSL+ R+L + + AAP YLK P Sbjct: 126 IDLHMSDATVDLIGEGFDLALRIAR-LPDSSLVARRLCPMPRYTVAAPSYLKRHGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + L + ++ A RP G+ L+VN+ +++ + G G Sbjct: 185 MHLAEHKCFGYAYLSTAGVWHYSNAAGEQASVRPAGQ-----LRVNNGEAVLPAVIAGLG 239 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LPD+I+ D + + I++ P ++ P +++ F+ Sbjct: 240 IADLPDFIIADAIASGEVEVILKGWSQPEGAMHLVMPPGGPRPARVEVLTEFL 292 >gi|209520289|ref|ZP_03269056.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209499260|gb|EDZ99348.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 303 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 13/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V +GSF AAE L +S+++ISR + LE +G++L +R R L+LTE+G Sbjct: 6 EMTAFTAVVDAGSFVAAAETLRISKTAISRYVDALEQRIGVRLLHRTTRRLSLTEEGRLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ ++ + E+ + PSG +R+ + G + L +F+ YP I + + Sbjct: 66 YQRARDILAAIDDAEAEVGSRTQVPSGSIRVNVPLSFGMSHLASIWGQFMAAYPQIDLDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L+++ +D+ + D A+R+ + SSL+ RKL T M A+P YL P + L Sbjct: 126 TLNDRVVDLVDEGYDLAVRI-SSLPDSSLVSRKLATTEMLTCASPDYLARNGMPSHPRNL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H ++ + L E W + P GE + + N+ + + G GI L Sbjct: 185 AEHRVLAYTGLT----ERDEW--RFEGPEGEVVVRTRARVYSNNGDTCRAIALRGGGIIL 238 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V + LVR++ + + + +Y YP + K++ +F+ Sbjct: 239 QPSFMVAGDLERGQLVRVLPEYRSRALGIYAVYPSRKQLPLKVRCLVDFL 288 >gi|84684127|ref|ZP_01012029.1| transcriptional regulator, LysR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667880|gb|EAQ14348.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2654] Length = 301 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 141/299 (47%), Gaps = 18/299 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +PD+ + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVNTDFGVNHLSPVLGQFLQDFPDVNVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ SSL RK+ +P+Y + P+ I +L Sbjct: 126 VLNNRYVELISEGFDMAIRVGE-MEDSSLRARKIADTTRRMVGSPNYFQKYGRPMRIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + V P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHY------SSQSSGNVWKVPAPSGEVRQVRTAGWLSVNDGQSLLNAAIAGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP ++ D ++ED I P +Y YP K++AF +F+ D Sbjct: 239 YLPSFLYADALEQ-GLVEDAI-PELPMDVQGIYAVYPPGRFTQPKVRAFIDFLVAAFND 295 >gi|149911195|ref|ZP_01899819.1| hypothetical transcriptional regulator [Moritella sp. PE36] gi|149805722|gb|EDM65720.1| hypothetical transcriptional regulator [Moritella sp. PE36] Length = 324 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 5/284 (1%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GSFT AA+ S S IS++I+ LE+ +G++L +R R L+LT +G + Sbjct: 30 IFVEVVNNGSFTLAAQTSGHSTSYISKEINKLESRLGVRLIHRTTRSLSLTPEGEIYFQQ 89 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ E T+ L +KP G LRI+ G + +Q FL YP + ++L L+ Sbjct: 90 CQQIISDAEQTEEALNGHQLKPKGTLRISCPTSFGHSRMQSIFSRFLAKYPLVDLELDLN 149 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +D+ + D IR + S+LI +K+ + H A+P YL++ P EL +H Sbjct: 150 NRKVDMVSEGFDVLIRGSGQLDDSTLISKKVFSSHGVIIASPEYLRHAGTPQDPSELIEH 209 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 +I + L K + ++ D+ S + NS + C+ G GI +P + + Sbjct: 210 KIINYSHL--KQPNTWTFIDNNDKQHHVQLKSRVLTNSPEMELSLCLAGHGITRMPLFNL 267 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D LV + D +Y YP + K++ F +F+ Sbjct: 268 FDEIETGKLVELFSDFKRQEVNLYLVYPSRKHVSSKVRCFIDFV 311 >gi|256258241|ref|ZP_05463777.1| Transcriptional regulatory protein, LYSR family [Brucella abortus bv. 9 str. C68] gi|297249089|ref|ZP_06932797.1| hypothetical protein BAYG_03131 [Brucella abortus bv. 5 str. B3196] gi|297174222|gb|EFH33579.1| hypothetical protein BAYG_03131 [Brucella abortus bv. 5 str. B3196] Length = 308 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 144/296 (48%), Gaps = 21/296 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P Sbjct: 135 LTIQLVPMPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYC 235 S ++L++H LI + +ED ++ + P IS +V+S L ++ Sbjct: 194 SPEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAV 242 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 243 RAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296 >gi|167616873|ref|ZP_02385504.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 299 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D LR+F +GSFT AA++L LS+ +SR++ LE +G++L R+ R L +T+ G Sbjct: 3 FDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGH 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +R + + + T+ + G L+I+ + G L + EFL+ +P +++ Sbjct: 63 EFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAVRL 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ +D+ + D A+R+ + S+LI R+L + M A +P Y + R P + Sbjct: 123 HVDLSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHRAPATPA 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H + +G W T+ G R L N+ I + G G Sbjct: 182 DLHGHACLLYGQ-----EGRTGWEFTIG---GARRTFEVQGALLANNGDVIRDAAIAGLG 233 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP +IV D LV ++E V YP+ ++ +AF FI Sbjct: 234 IALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFI 286 >gi|167578737|ref|ZP_02371611.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 299 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D LR+F +GSFT AA++L LS+ +SR++ LE +G++L R+ R L +T+ G Sbjct: 3 FDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGH 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +R + + + T+ + G L+I+ + G L + EFL+ +P +++ Sbjct: 63 EFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAVRL 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ +D+ + D A+R+ + S+LI R+L + M A +P Y + R P + Sbjct: 123 HVDLSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHRAPATPA 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H + +G W T+ G R L N+ I + G G Sbjct: 182 DLHGHACLLYGQ-----EGRTGWEFTIG---GARRTFEVQGALLANNGDVIRDAAIAGLG 233 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP +IV D LV ++E V YP+ ++ +AF FI Sbjct: 234 IALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFI 286 >gi|83717647|ref|YP_440164.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83651472|gb|ABC35536.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 399 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D LR+F +GSFT AA++L LS+ +SR++ LE +G++L R+ R L +T+ G Sbjct: 103 FDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGH 162 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +R + + + T+ + G L+I+ + G L + EFL+ +P +++ Sbjct: 163 EFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAVRL 222 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ +D+ + D A+R+ + S+LI R+L + M A +P Y + R P + Sbjct: 223 HVDLSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHRAPATPA 281 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H + +G W T+ G R L N+ I + G G Sbjct: 282 DLHGHACLLYGQ-----EGRTGWEFTIG---GARRTFEVQGALLANNGDVIRDAAIAGLG 333 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP +IV D LV ++E V YP+ ++ +AF FI Sbjct: 334 IALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFI 386 >gi|257140794|ref|ZP_05589056.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 299 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D LR+F +GSFT AA++L LS+ +SR++ LE +G++L R+ R L +T+ G Sbjct: 3 FDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGH 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +R + + + T+ + G L+I+ + G L + EFL+ +P +++ Sbjct: 63 EFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAVRL 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ +D+ + D A+R+ + S+LI R+L + M A +P Y + R P + Sbjct: 123 HVDLSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHRAPATPA 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H + +G W T+ G R L N+ I + G G Sbjct: 182 DLHGHACLLYGQ-----EGRTGWEFTIG---GARRTFEVQGALLANNGDVIRDAAIAGLG 233 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP +IV D LV ++E V YP+ ++ +AF FI Sbjct: 234 IALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFI 286 >gi|319426217|gb|ADV54291.1| transcriptional regulator, LysR family [Shewanella putrefaciens 200] Length = 292 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + SFT AA++L++S + +SRQ+S LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ +P ++ Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL +HN + + + N+ V+ G R L NS ++ + G G Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++++ L+ ++ ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEEDIQAGRLLSFLDSHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287 >gi|59714292|ref|YP_207068.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|59482540|gb|AAW88179.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 300 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 139/296 (46%), Gaps = 8/296 (2%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+F+ +D + +F V SGSFT AA S S IS++I LE +G++L +R R L Sbjct: 1 MAFNSALFDGMVIFSEVVTSGSFTQAALNSGHSTSYISKEIGKLEERLGVRLLHRTTRTL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT +G + ++ + + + KP G+L+++ + + L+ L +F Sbjct: 61 RLTPEGELYFQQCQQLIEDAQMAENSITGQQEKPKGRLKVSCPVGFALSRLRPILGKFTD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYPDI ++L L++K IDI + D AIR ++ SSLI R+ + A+P YLK Sbjct: 121 LYPDIILELDLNDKKIDIVAEGFDMAIRASHQLEDSSLISRRFLRSKAITIASPGYLKKH 180 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 PL +L H I + + + DF +P S + N+ + C+ Sbjct: 181 GAPLYPHDLSSHKTIGYAYVKQGAIWDF--FDKNKQPFSVQLNSQVITNNSFMALSLCLA 238 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P + + D LV + D + ++ YP + K++ F +FI Sbjct: 239 EQGITRIPHFHLTDELETGKLVELFADYPKLTIDIFMVYPSRKHMSAKVRCFMDFI 294 >gi|227112818|ref|ZP_03826474.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 297 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 6/287 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA +L LSQS++S I GLE +G++L R R + TE G Sbjct: 5 NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 KL + +E+ + L + +P+G +RI ++L LK FL+ YPDI Sbjct: 65 EKLAHSLGPHFADIESELVALGDMRERPAGNIRITAGEHAVDSILWPVLKPFLVNYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + +DN DI + D IRL + ++ + R + M +P+Y P++ Sbjct: 125 VDITVDNALADIVLGRFDAGIRLGEQVEKDMIAVRVAPEMSMAVVGSPNYFARNPAPVTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L H I +P + W R I L +NS + +G G+A Sbjct: 185 QDLQHHRCINL--RLPTMGGIYAWEFEKNGREIKVRVEGQLTMNSLRQRIDAARIGLGLA 242 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P+ V+++ L+R++ + P Y YP ++T F Sbjct: 243 YVPEDSVQNDIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLF 289 >gi|62290695|ref|YP_222488.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82700611|ref|YP_415185.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus 2308] gi|254703598|ref|ZP_05165426.1| Transcriptional regulatory protein, LYSR family [Brucella suis bv. 3 str. 686] gi|254708316|ref|ZP_05170144.1| Transcriptional regulatory protein, LYSR family [Brucella pinnipedialis M163/99/10] gi|254714672|ref|ZP_05176483.1| Transcriptional regulatory protein, LYSR family [Brucella ceti M644/93/1] gi|256255734|ref|ZP_05461270.1| Transcriptional regulatory protein, LYSR family [Brucella ceti B1/94] gi|256370237|ref|YP_003107748.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|260168031|ref|ZP_05754842.1| Transcriptional regulatory protein, LYSR family [Brucella sp. F5/99] gi|62196827|gb|AAX75127.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str. 9-941] gi|82616712|emb|CAJ11797.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Brucella melitensis biovar Abortus 2308] gi|256000400|gb|ACU48799.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] Length = 301 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 8 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 68 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 186 Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 S ++L++H LI + DL+ P+ D+ +V+S L + Sbjct: 187 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 232 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 233 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 289 >gi|295700491|ref|YP_003608384.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439704|gb|ADG18873.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 305 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 8/301 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA + +S +++SR ++ LE +G +LF R +R L+LTE G Sbjct: 6 DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+Y + E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 RTICEKAGEIYRQAEEAESAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D A+R+ + SSL+ R+L + A+P YLK R P Sbjct: 126 IDLHLSDASVDLVADGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPAYLKRERRPAHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +EL +++ + F A + P+ L+V + +++ + G IA Sbjct: 185 RELVGRPCLSYAYRARSDVWRFTNAAGEEEPVMP--TGPLRVTNSDALLPTLLDGLAIAE 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298 LP++I + + L I+ D +YF P A K+ A ++ L W+ Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYFAEHLSEPSWR 302 Query: 299 F 299 + Sbjct: 303 W 303 >gi|254719820|ref|ZP_05181631.1| LysR family transcriptional regulator [Brucella sp. 83/13] gi|265984838|ref|ZP_06097573.1| transcriptional regulator [Brucella sp. 83/13] gi|306839518|ref|ZP_07472326.1| LysR family transcriptional regulator [Brucella sp. NF 2653] gi|264663430|gb|EEZ33691.1| transcriptional regulator [Brucella sp. 83/13] gi|306405463|gb|EFM61734.1| LysR family transcriptional regulator [Brucella sp. NF 2653] Length = 293 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ +LV + YA YL+ P S Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVAHRLVDYTLCLYAHRSYLEENSTPKS 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I + +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIARADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|163845410|ref|YP_001623065.1| hypothetical protein BSUIS_B1310 [Brucella suis ATCC 23445] gi|189024909|ref|YP_001935677.1| LysR family transcriptional regulator [Brucella abortus S19] gi|225628384|ref|ZP_03786418.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|237816197|ref|ZP_04595192.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254689986|ref|ZP_05153240.1| Transcriptional regulatory protein, LYSR family [Brucella abortus bv. 6 str. 870] gi|254694477|ref|ZP_05156305.1| Transcriptional regulatory protein, LYSR family [Brucella abortus bv. 3 str. Tulya] gi|254698136|ref|ZP_05159964.1| Transcriptional regulatory protein, LYSR family [Brucella abortus bv. 2 str. 86/8/59] gi|254700475|ref|ZP_05162303.1| Transcriptional regulatory protein, LYSR family [Brucella suis bv. 5 str. 513] gi|254717570|ref|ZP_05179381.1| Transcriptional regulatory protein, LYSR family [Brucella ceti M13/05/1] gi|254731020|ref|ZP_05189598.1| Transcriptional regulatory protein, LYSR family [Brucella abortus bv. 4 str. 292] gi|256160528|ref|ZP_05458217.1| Transcriptional regulatory protein, LYSR family [Brucella ceti M490/95/1] gi|163676133|gb|ABY40243.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020481|gb|ACD73203.1| Transcriptional regulatory protein, LYSR family [Brucella abortus S19] gi|225616230|gb|EEH13278.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|237788659|gb|EEP62872.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] Length = 308 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193 Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 S ++L++H LI + DL+ P+ D+ +V+S L + Sbjct: 194 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 239 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 240 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296 >gi|260565678|ref|ZP_05836161.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|265991861|ref|ZP_06104418.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265999312|ref|ZP_06111641.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260151051|gb|EEW86146.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|263002817|gb|EEZ15220.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263093197|gb|EEZ17294.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|326409837|gb|ADZ66902.1| LysR family transcriptional regulator [Brucella melitensis M28] gi|326539552|gb|ADZ87767.1| transcriptional regulator, LysR family protein [Brucella melitensis M5-90] Length = 293 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P S Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPKS 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|167584840|ref|ZP_02377228.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 334 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 148/287 (51%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHSRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ + A+P YL+ EP SI++L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRIGLFECTSVASPAYLEKYGEPQSIEDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E ++ S + VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRVIDWTFLIDGKEVEIKMDSVVSVNDADAYVTCGLEGFGLVQPPL 243 Query: 247 YIVKDNPNLVRIMEDV--ITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + R+ E + I P + YP + + K++ F ++I Sbjct: 244 FMVLPHLREGRLKEVLPGIKPLPMPISVVYPHSRHLSPKVRVFVDWI 290 >gi|330721628|gb|EGG99646.1| Transcriptional regulator2C LysR family2C in formaldehyde detoxification operon [gamma proteobacterium IMCC2047] Length = 294 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 150/294 (51%), Gaps = 17/294 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ + F VA + SFT AA+QL +S + +SRQ+S LET + KL +R R +++TE Sbjct: 2 FNWEGVTEFVAVAETESFTAAAKQLDISTAQVSRQVSALETRLATKLLHRTTRKVSVTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ ++ ++ LE+ + + + P+GKL+I + G+ + + FL YPD+ Sbjct: 62 GNIYYQRCRQILEDLESAEDAISDMQSHPTGKLKITAPVTYGEATIAPLVNNFLKRYPDL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ L N D+ D D AIR + + S+++ ++L + + A YL+ +P Sbjct: 122 DVEVNLSNLKKDLIEDGFDIAIR-QGNLGDSTMMAKRLSSRTFYVCATSEYLERYGKPEK 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 +L+KHN C++ N W V+ R++ L+ NS ++ + Sbjct: 181 PADLEKHN----------CLQSMNEFWYFQVNGKARNIRLTGNLRSNSGHVLLDASLKSI 230 Query: 240 GIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI LP DY+ ++ +L I+E+ P V+ YP+ + K++ +++ Sbjct: 231 GIVQLPGDYVCPHVESGDLEVILEEYRAPDQGVWALYPQNRHLSSKVRLLLDYL 284 >gi|330959221|gb|EGH59481.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. maculicola str. ES4326] Length = 298 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA++L +S S +SRQI+ LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIARLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMGLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N +D+ + D AIRL + +Q S + +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRRVATRLAPRQMYLCASPSYIQRYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELSRHNCLIGGS-------DTWLLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLKDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|23502686|ref|NP_698813.1| LysR family transcriptional regulator [Brucella suis 1330] gi|23348697|gb|AAN30728.1| transcriptional regulator, LysR family [Brucella suis 1330] Length = 301 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 8 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 68 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 186 Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 S ++L++H LI + DL+ P+ D+ +V+S L + Sbjct: 187 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 232 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 233 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 289 >gi|50122057|ref|YP_051224.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49612583|emb|CAG76033.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 297 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 133/287 (46%), Gaps = 6/287 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA +L LSQS++S I GLE +G++L R R + TE G Sbjct: 5 NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 KL + +E+ I L + +P+G +RI ++L LK FL YPDI Sbjct: 65 EKLAHSLGPRFADIESELIALGDMRDRPAGNIRITAGEHAVDSILWPMLKPFLANYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I++ +DN DI + D IRL + + + R + M +P+Y P++ Sbjct: 125 IEITMDNALTDIVVGRFDAGIRLGEQVAKDMIAVRIAPEMSMVVVGSPNYFARNPVPITP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L H I +P + W R I L +NS + +G G+A Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAWEFEKSGREIKVRVEGQLTMNSLRQRIDAAQIGLGLA 242 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P+ V+D+ L++++ + P Y YP ++T F Sbjct: 243 YVPEDSVRDDIASGRLIQVLTEWCPPFPGYYLYYPSRKQHTTAFSLF 289 >gi|265995700|ref|ZP_06108257.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262766984|gb|EEZ12602.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 293 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGPTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P S Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPKS 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|258544572|ref|ZP_05704806.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC 15826] gi|258520203|gb|EEV89062.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC 15826] Length = 297 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 151/297 (50%), Gaps = 20/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F + SGSFT A+E L +S + S+ +S LE +GI+L R++R L+LT +G + Sbjct: 7 LKIFAQIVESGSFTRASEYLGISTAMASKHLSHLEKHLGIRLMQRNSRSLSLTAEGEVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + E L+ + P G LR+ I + ++E+ YP++ + +I Sbjct: 67 RQSIEALQLLDAAAAQAGSGRETPQGHLRLTAPIWCANPVFADWMREYRARYPEVSLDII 126 Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN D+ + D A+R+ R PI SL+ R+L + A+P Y++ P ++++ Sbjct: 127 LDNDMRDLIGEGIDLALRVSRAPI--PSLVVRRLFEVRFALVASPAYIRRHGLPRTLEDA 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-----ISCLQVNSYLSIMQYCVLGSGI 241 H+ + + + ++ +D G+ S LQ NS + + Q + GSGI Sbjct: 185 ASHSAV---------LPSYADISRMDCRRGDESHTLHLHSALQSNSTVMLHQLLLAGSGI 235 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP ++ +D+ LVR++ D S T++ YP+ + K+++F +F+ KA+ Sbjct: 236 GYLPLWLAQDDLTAGRLVRLLPDWQLRSITLHAAYPDRRHLSAKIRSFIDFLVEKAK 292 >gi|240137637|ref|YP_002962108.1| transcriptional regulator, LysR family [Methylobacterium extorquens AM1] gi|240007605|gb|ACS38831.1| transcriptional regulator, LysR family [Methylobacterium extorquens AM1] Length = 298 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 136/290 (46%), Gaps = 9/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ L F +AR G AA +L + +++SR+I+ LE + KLF R + G LTE Sbjct: 2 FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G KL + + K+ + EL S +P+G++R+A+ + L EF P Sbjct: 62 GHKLFVIAEAIEQKMLSVPDELGLSDGAEPAGRVRVASMEGIAAFYLSAKFAEFAAAMPG 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ + I+++ AD ++ P Q L R++ + + A Y P Sbjct: 122 IVVELVTERHLINLTKREADISVSFVPP-QGPRLQVRRVGEFRLALFGAERYFATHGRPT 180 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L H+ + + DL+ +E +WL V +P + S + G+G Sbjct: 181 TRADLQDHDFVDYVDDLV--AIEPVHWLLEVLKPTN----VVFRSTSMAAQQTAVAAGAG 234 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LLP + K NP L+ ++ D + +Y E ++ G+++A F+ Sbjct: 235 LGLLPLFSAKTNPALIPVLADDVVVQRELYLGVHEDIEYAGRIRAVTRFL 284 >gi|170767711|ref|ZP_02902164.1| transcriptional regulator, LysR family [Escherichia albertii TW07627] gi|170123199|gb|EDS92130.1| transcriptional regulator, LysR family [Escherichia albertii TW07627] Length = 304 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACCDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|13476319|ref|NP_107889.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14027080|dbj|BAB54034.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 299 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 144/290 (49%), Gaps = 15/290 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF V +GSFT AA L + ++++SR+++ LE EVG++L R R L LT+ G Sbjct: 3 DLNDVVVFARVVEAGSFTAAARLLAMPKTTVSRRVAALEREVGVRLLQRTTRSLNLTDAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +S+ +E + L E+ +PSG +RI+ + G + L + +FL LYP Sbjct: 63 RLYYEQSSQGLRTIEEANLRLAEARAEPSGTIRISAPVGFGGHFLIRAVVDFLALYPKTN 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L + +++ D D A R + ++ S+LI RKL + H A+ YL P Sbjct: 123 VELRLTDDKLNLIEDGIDLAFRTGR-LEDSTLIARKLGSTHRLLCASHDYLARYGIPEGP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 +L +H + G +W+ +D P G+ + N ++ + G G Sbjct: 182 ADLARHRCVIAG----PSASGAHWV--LDGPQGQETVVVAGRFAANEMQAVAAAALAGFG 235 Query: 241 IALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 IA LP D ++ + L R+++ TP+ ++ +P + + +KAF Sbjct: 236 IAQLPQPMADGLINEG-RLRRVLDGYTTPAGGLHVLFPSSRHLSPLVKAF 284 >gi|113970123|ref|YP_733916.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|113884807|gb|ABI38859.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] Length = 293 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 147/292 (50%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + +FT AA++L++S + +SRQI LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ EP ++ Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + + +E+ R L NS ++ + G GI L Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 PDY ++++ L+ ++ ++ YP+ + K++ +++ K Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEK 287 >gi|77459913|ref|YP_349420.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383916|gb|ABA75429.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 299 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 143/281 (50%), Gaps = 9/281 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SFT +S S++ + I+ LE + ++LF+R R +TLT +G+ Sbjct: 9 VFVQVAETRSFTETGRLQGVSSSAVGKSIARLEARLNVRLFHRTTRSITLTSEGTLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ ++E + EL +++ P G LR+ ++ +L+ + EF+ LYP I++ L L Sbjct: 69 CRKILAEVEAAEFELCDAAAAPHGNLRV--SLPQVHDLVMPVMNEFMALYPQIELDLDLT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D IR KP + S L+ R L HM A+P YL+ EPL+ +L +H Sbjct: 127 DRMVDVVEEGFDAVIRTGKP-RDSRLMARPLGEFHMVLVASPAYLRERGEPLTPADLAEH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDYI 248 + +E +W + EP + V++ + +++ L G GIA LPD++ Sbjct: 186 ACLRHTFHATGKLE--SWPFNREEGAPEPTLPTRLVSTSIEAVRHAALAGMGIACLPDFM 243 Query: 249 V---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + L R++++ + + +P + T KL+ F Sbjct: 244 IFEAQQQGRLQRVLDEHLEHVGQFWVLWPSSRHATAKLRVF 284 >gi|87119248|ref|ZP_01075146.1| hypothetical transcriptional regulator [Marinomonas sp. MED121] gi|86165639|gb|EAQ66906.1| hypothetical transcriptional regulator [Marinomonas sp. MED121] Length = 302 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 5/288 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF V SGSFT AA+ S S IS++I LE +G++L +R R L+LT +G Sbjct: 9 DGMVVFVEVVNSGSFTQAAQNSGHSTSYISKEIHKLEARLGLRLMHRTTRSLSLTPEGEA 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ S + + E + L ++P G LRI+ + + + FL YP + + Sbjct: 69 YYQQCSLIISQAEEAESALSGQQLEPKGDLRISCPTSFALSQMPCIIANFLDKYPLVNLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ +D+ + D +R + SSLI RK+ H AAP YL P + Sbjct: 129 VDLNNRKVDMITEGYDILVRGAHQLDDSSLISRKVYASHAVTIAAPSYLAKYGVPQHPND 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H I++ L K + ++ + P S L N+ + CV G+GI LP Sbjct: 189 LINHQTISYSYL--KQPNIWQYVDEHQKSFQVPVKSRLMTNNSELELDLCVAGNGITRLP 246 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +KD LV++ E+ +Y YP + K++ F +F+ Sbjct: 247 RFSLKDELETGKLVQLFEEYDKHKIDIYLIYPSRKHLSSKVRCFIDFV 294 >gi|326797070|ref|YP_004314890.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547834|gb|ADZ93054.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 302 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + + V SGSF+ AAE+L +S+S+IS+++S LE ++G+KL +R R L+LTE G Sbjct: 7 ISILVTVVESGSFSKAAERLGISKSAISKRVSQLEAQLGVKLLHRTTRKLSLTEAGEHFF 66 Query: 68 RVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ H+ I+ + + +P G+L+I+ + G+ L +FL YP I I L Sbjct: 67 K-HAQIAHQASKDAIDAVAQLQGEPQGRLKISCPMSFGRLHLAPLTPKFLKKYPKITIDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D+K DI D AIR + S+L+ RKL + A+ YL P ++ L Sbjct: 126 VMDDKISDIIGQGFDLAIR-GGVLPDSNLVVRKLAPLRSVLCASQTYLNQHGVPAELEAL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 HN + F + W + + IS QVNS ++ + + G GI LP Sbjct: 185 SSHNCLAF----TYSNDKREWTFMKEGEVQRISISGNYQVNSSEALKEAIIQGLGIGRLP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I NLV + E+ P ++Y YPE K++ F +FI Sbjct: 241 TFIAGPEIKKGNLVALFEEYEMPRQSMYAVYPERHYLPKKVRVFIDFI 288 >gi|254436489|ref|ZP_05049983.1| hypothetical protein OA307_1359 [Octadecabacter antarcticus 307] gi|198251935|gb|EDY76249.1| hypothetical protein OA307_1359 [Octadecabacter antarcticus 307] Length = 295 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G + Sbjct: 1 MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + PSG LRI+ D G N L L +FL +PDI + ++ Sbjct: 61 DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLGEFPDITVNMV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ +++ + D AIR+ + ++ S+L RKL A+P Y + P I +L+ Sbjct: 121 LNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSRRMIASPGYFEQFGRPQKIDDLN 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 H L+ + + + W + P GE R L VN S++ + G GIA Sbjct: 180 DHKLLHYSNQSNSAV----W--KLKAPSGEKRQVRTAGWLTVNDGQSLLNAAISGLGIAY 233 Query: 244 LPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D LV + D+ + +Y YP K++AF +F+ Sbjct: 234 LPSFLYADALAKGLVEEAIPDLPVDTQGIYAVYPPGRFTQPKVRAFIDFL 283 >gi|190892415|ref|YP_001978957.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190697694|gb|ACE91779.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 300 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 15/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VAR GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 3 DLNDIAVFVKVARYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE L + L E+ KP G L+I+ + GQ + + +FL YP+I+ Sbjct: 63 RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + N +D+ + D IR + ++ S+++ ++L + AAP YL++ P + Sbjct: 123 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRAFPTNP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 ++L H + L+ + W R + R+S + + ++ + G GI Sbjct: 182 EDLKDHRCV----LLNGRNGEAEWHLISGRKSVDVRVSGAISSRDFDAVSAFTYRGHGIG 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298 LLP + L+R++ D +P V+ YP T + R +FL A + WK Sbjct: 238 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYP-----TRRFLPLRLQVFLDALKAWK 292 >gi|262278398|ref|ZP_06056183.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258749|gb|EEY77482.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 344 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 145/287 (50%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SF+ AA+ L L ++S++ I GLE + ++L R R L+LT G+ + Sbjct: 9 MKVFNKVVETNSFSLAADSLGLPRASVTTTIQGLEKHLQVRLLNRTTRKLSLTPDGAVYY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 TS + +E + +S P G+LRI +G+ +L L +F YPDI + + Sbjct: 69 ERTSRILADVEDVESNFHDSERGPRGRLRIDVKASIGRLILIPMLCDFHAKYPDIDLVIG 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR+ + ++ SSL+ R++ TI AAP YL EP +I +L Sbjct: 129 MSDRPVDLVQDAVDCVIRIGQ-LKDSSLVARRIGTIQCVTVAAPRYLAEHGEPQTIDDLQ 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 KH ++ + + + + +W VD I + + VN S + V G G+ P Sbjct: 188 KHQVVHYFN--SRTGRNIDWDFMVDGEIHSVGVKGRVSVNDGDSYVDLAVQGFGLIQCPY 245 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V ++ +L ++ + + + Y + + K++ F +++ Sbjct: 246 YMVAKHLEDGSLKEVLTEWLPAPMPISVVYLQNRHLSPKVRVFVDWV 292 >gi|289671727|ref|ZP_06492617.1| LysR protein [Pseudomonas syringae pv. syringae FF5] Length = 311 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ + LE + +KL R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVKLLNRTTRRVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++ P G+LR+ L LL L F YPDIQI Sbjct: 64 VFYERVVRLLADMDDAETSLSSAASLPRGRLRVDVPSPLASMLLMPALPGFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + I SL+ R++ + + YAAP YL+ P+ Q Sbjct: 124 DMGVSDRMVDLIGENVDCVVRGGE-IADQSLMARRVGDLQLGVYAAPDYLQRMGTPVHPQ 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ + G +P M+ V G ++ N+Y++ + Sbjct: 183 ELEDSAHRIVGYLWARTGKALPYAMQRNGEKLHVQ---GRYTLAVDDGNAYVAA---GLA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ K + LV + ED S +Y +P + K++ F ++I Sbjct: 237 GMGILWLPDYMAKLYRERGALVPLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292 >gi|254460462|ref|ZP_05073878.1| transcriptional regulator, LysR family [Rhodobacterales bacterium HTCC2083] gi|206677051|gb|EDZ41538.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium HTCC2083] Length = 295 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G + Sbjct: 1 MEAFATVVDQGGFTDAAKRMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + PSG LRI+ D G N L L +FL +PDI + ++ Sbjct: 61 DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLSEFPDITVNMV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ +++ + D ++R+ + ++ SSL RKL A+P Y + P I +L+ Sbjct: 121 LNNRYVELISEGFDMSVRIGE-LEDSSLRARKLTETTKRMIASPAYFEKYGRPEKIDDLN 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 180 DHKLLHYSNQSSGNV----WKVTA--PSGEKRQIRTAGWLSVNDGQSLLNAAISGLGIAY 233 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ + +V + ++ T + +Y YP K++AF +F+ Sbjct: 234 LPSFLYSEAMEQGLIVDAIPELPTETQGIYAVYPPGRFTQPKVRAFIDFL 283 >gi|167648289|ref|YP_001685952.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167350719|gb|ABZ73454.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 302 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 147/291 (50%), Gaps = 8/291 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF VA +GSF AAEQL+LS++++S+ ++ LE +G LF+R +R L+LTE G Sbjct: 5 DFEAWAVFAKVAETGSFVRAAEQLNLSKATVSKAVTRLEQRLGATLFHRTSRRLSLTEAG 64 Query: 64 -SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + L R T+ + + ET + E S P G +R+A + G L L EF LYP++ Sbjct: 65 RASLDRATN-MLREGETLEAEASAQSATPRGLVRVAAPMSFGIAHLGPALPEFFALYPEV 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L L ++ +DI + D A+R+ ++ SSL+ R+L + + +P Y P Sbjct: 124 SIELSLSDQLVDIVEEGFDLALRISA-LEDSSLLARRLCPVRLMLVGSPAYFDKHGRPGH 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H+ + + + K + F + S L+VN+ + + G G+A Sbjct: 183 PKDLTAHSGLFYTNSRTKDVWRFEHAEHGQYAVS--LRSPLRVNNADILRPSLLAGLGLA 240 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + PD++ ++ L ++ D P ++ P + +++ F+ Sbjct: 241 MQPDFLTWEDVKSGLLEEVLADWAPPPIALHLVTPPSTIRPARVEVLIAFL 291 >gi|27379064|ref|NP_770593.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27352214|dbj|BAC49218.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 302 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 10/291 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + DWD R + R GS + AA+QL + +++ R++ LE + KLF R G LTE Sbjct: 6 AIDWDDFRFVLAIVRGGSVSAAAKQLGVDHATVIRRVDRLEKHLSAKLFDRRKTGYLLTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + Q ++ S + +G +RI G L L F YPD Sbjct: 66 AGQRVADSAEAMESTIVANQEQVGGSVARLTGTVRIGAPDGFGTAFLAPRLAPFADRYPD 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + +QL+ + +S AD AI L P + ++ RKL+ + YAAP YL + Sbjct: 126 LDLQLVATARLFSLSKREADIAISLTMP-KEGRIVGRKLLDYRLGLYAAPAYLDRFPTIV 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISC-LQVNSYLSIMQYCVLGS 239 S + L +H + + +E+ + +D P PRIS + + ++ + + G Sbjct: 185 SREVLPQHRFVGY-------IEELLFTPELDYLPQVSPRISARFRSANLIAQLNATLSGF 237 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LP ++ D P LV ++ + I+ + T + K+ +++A ++I Sbjct: 238 GIAVLPHFMASDYPQLVAVLPEEISITRTFWMLMHADSKDLARIRAVADYI 288 >gi|330504220|ref|YP_004381089.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918506|gb|AEB59337.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 308 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 141/285 (49%), Gaps = 15/285 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G F+ AAE+L LS S +SRQ++ LE + +LFYR R + LTE G Sbjct: 4 WEGLDEFVAVAECGQFSAAAERLGLSTSQVSRQVARLEDRLQSRLFYRSTRRVALTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E + + +P G LR+ + G+ + + +F+ +P +++ Sbjct: 64 LFLQHCQRLQDAREEALRAVGDLGAEPKGLLRMTCAVAYGERFIVPLVNDFMARHPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L N+ +D+ + D AIRL + +Q S L+ +L M+ AAP YL+ P S+ Sbjct: 124 EIELSNRQLDLLHEGLDLAIRLGR-LQDSRLMAARLAPREMYLCAAPEYLQRYGRPHSLS 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL +HN LI D +W + + R+ + NS +++ + G G+ Sbjct: 183 ELARHNCLIGSSD---------HWSFAENSRETQVRVQGNWRCNSGQAVLDAALRGFGLC 233 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 LPDY V + + L+ ++E P+ V+ YP+ + K++ Sbjct: 234 QLPDYYVLEYLRSGRLISLLEQHRPPNTAVWALYPQQRHLSPKIR 278 >gi|37679026|ref|NP_933635.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37197768|dbj|BAC93606.1| transcriptional regulator [Vibrio vulnificus YJ016] Length = 295 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 10/260 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W+ + F VA SGSFT AA +L S +++SR++ LE +G+KL R R ++LTE Sbjct: 4 NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + L ++ + + P GKLRI + G+ + L FL+ YP Sbjct: 64 AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIAPLLNGFLIRYPK 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+L N+ +D+ D A+RL + ++ SS + R+L H+H A P Y + P Sbjct: 124 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L HN + + E+ R I RI C +S + ++ + G G Sbjct: 183 TLSDLSSHNCLIGTHDHWRFKENHQ-----GRSIKVNGRIRC---SSGVVLLDAALKGIG 234 Query: 241 IALLPDYIVKDNPNLVRIME 260 + LPDY V ++ + R++E Sbjct: 235 LVQLPDYYVDEHLHAGRLIE 254 >gi|317402486|gb|EFV83054.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 313 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 24/304 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ AA L + +S +SR+IS LE +G++L R R L LT G Sbjct: 3 DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTAAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+ +++ +P+G + ++ + + Q++L L EFL +P I Sbjct: 63 ERYLHYCREMAASARAADDAMRQLQSEPTGPVVVSCPVSIAQDVLAPLLPEFLDAWPAIS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL++ N+ +D+ + D A+R+R + + + L+ R L T A+P YL+ P + Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHLGTARGTLVASPGYLQRHGAPDT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235 Q+L H ++F D + W D+ GE P++SC N ++ +++ Sbjct: 183 PQDLASHTTLSFSD----PQNEVRWPLRNDK--GEEVHIELKPQLSC---NDFIVLVEAA 233 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291 V G GIALLP ++ LV ++ +P V+ YP G + A R + F Sbjct: 234 VRGRGIALLPSIATQEELRRGQLVPVLPQWQSPEGIVHCIYP---SRRGMMPAVRTLLDF 290 Query: 292 LKAR 295 L R Sbjct: 291 LSQR 294 >gi|104783724|ref|YP_610222.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112711|emb|CAK17439.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 301 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 145/293 (49%), Gaps = 19/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF+ AA Q LS + +SRQ+ LE E+G +L R R L LTE G+ + Sbjct: 7 MQTFRRVVDLGSFSAAATQAGLSHTVLSRQVKNLERELGTQLLNRTTRRLQLTEAGALFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++ +++ +EL E +P+G LR+ G+ L L +F+ + +QI+L Sbjct: 67 RHCVQILEQMQAMTLELSEHQQQPTGTLRLGVATAFGELELGRWLPDFVERHERLQIELN 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D +R+ + SSL+ RKL T + AAP YL+ P + L Sbjct: 127 CSDRFVDLLEEDIDVCLRVTDHLPDSSLVARKLATSEVLLVAAPAYLERHGCPSTPDALA 186 Query: 188 KHNLITFGDLI-PKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGSG 240 H L+ + L+ P+ ++ + P GE PR L NS +++ + G G Sbjct: 187 AHPLLGYSQLLHPQRLQ-------LHGPAGETTDVVMPRR--LSANSPMALRAAAIGGLG 237 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA +IV D + L ++E PS +Y YP++ K++A +F+ Sbjct: 238 IASFDRFIVHDALLDGRLTPVLEGWSLPSRALYAIYPQSRYLAPKVRALLDFV 290 >gi|260547065|ref|ZP_05822803.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260755522|ref|ZP_05867870.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758745|ref|ZP_05871093.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762579|ref|ZP_05874916.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|261214793|ref|ZP_05929074.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219404|ref|ZP_05933685.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261222949|ref|ZP_05937230.1| transcriptional regulator [Brucella ceti B1/94] gi|261315815|ref|ZP_05955012.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261322466|ref|ZP_05961663.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261750979|ref|ZP_05994688.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261754233|ref|ZP_05997942.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261757479|ref|ZP_06001188.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265998908|ref|ZP_06111465.1| transcriptional regulator [Brucella ceti M490/95/1] gi|260095430|gb|EEW79308.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260669063|gb|EEX56003.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673005|gb|EEX59826.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675630|gb|EEX62451.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260916400|gb|EEX83261.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260921533|gb|EEX88186.1| transcriptional regulator [Brucella ceti B1/94] gi|260924493|gb|EEX91061.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261295156|gb|EEX98652.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261304841|gb|EEY08338.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737463|gb|EEY25459.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261740732|gb|EEY28658.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261743986|gb|EEY31912.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262553597|gb|EEZ09366.1| transcriptional regulator [Brucella ceti M490/95/1] Length = 293 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P S Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|24373613|ref|NP_717656.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24347948|gb|AAN55100.1|AE015647_6 transcriptional regulator, LysR family [Shewanella oneidensis MR-1] Length = 291 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 152/296 (51%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + +FT AA++L++S + +SRQI LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAITDLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEC 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ EP ++ Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL++HN + + + N+ ++ G R L NS ++ + G G Sbjct: 183 ELNQHNCL---------IGNHNYWRFIEH--GRERNFKVRGKLICNSGYALRDAALKGIG 231 Query: 241 IALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I LPDY ++++ + R++ + T ++ YP+ + K++ +++ K Sbjct: 232 IVQLPDYYIEEDIHAGRLISFLDTHREAKEGIWALYPQNRHLSAKVRVLVDYLAEK 287 >gi|86145017|ref|ZP_01063349.1| putative transcriptional regulator [Vibrio sp. MED222] gi|218677043|ref|YP_002395862.1| Transcriptional regulator [Vibrio splendidus LGP32] gi|85837916|gb|EAQ56028.1| putative transcriptional regulator [Vibrio sp. MED222] gi|218325311|emb|CAV27333.1| Transcriptional regulator [Vibrio splendidus LGP32] Length = 289 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 146/297 (49%), Gaps = 25/297 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA SFT AA++L S + ISR+++ LE + +KL R R ++LTE G Sbjct: 3 NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLLNRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + P G L++ + G+ L L +FL L+P ++ Sbjct: 63 QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+L N+ +D+ D AIRL + ++ SSL+ +KL ++ A+P Y++ EP ++ Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIERYGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCV 236 EL H + G E + + + G P RI C NS L++ Sbjct: 182 SELSNHQCLVGG------FEHWRF-----KENGRPRSVRVNGRIKC---NSGLALQDAAK 227 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LP+Y V ++ LV ++ D ++ YP+ + K++ +F+ Sbjct: 228 QSIGLVQLPEYYVSEDLESGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFL 284 >gi|332162784|ref|YP_004299361.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606893|emb|CBY28391.1| transcriptional regulator LysR family, yafC [Yersinia enterocolitica subsp. palearctica Y11] gi|325667014|gb|ADZ43658.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861051|emb|CBX71321.1| uncharacterized HTH-type transcriptional regulator yafC [Yersinia enterocolitica W22703] Length = 300 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V GSF+ AAEQL + S +SR + LE ++G+ L R R ++LT Sbjct: 1 MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R + ++ T + EL ++ + P G LRI + +++ + EF YP Sbjct: 61 QEGEHYFRRVQNILREMATAENELLDNQLNPKGLLRIDAATPVVLHIIAPLMAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ I++ D AIR+ +Q S+L RKL+T + H A+P YL+ P Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHILASPAYLRQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L+ H + F DL P W LA D + E + S L N+ + + C+ G+ Sbjct: 180 QTAADLEHHLCLGFNDL-PTLNR---WPLAGADGQLYEIK-SDLASNNGETQRRLCLEGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++++ + +LV I+ + V P VY+ +A+ N +L+ F +FI Sbjct: 235 GIACLSDFMIQQDLQRGDLVAILREHTLPVAMPINAVYYS-DQAVSN--RLRCFIDFI 289 >gi|298370395|ref|ZP_06981711.1| transcriptional regulator, LysR family [Neisseria sp. oral taxon 014 str. F0314] gi|298281855|gb|EFI23344.1| transcriptional regulator, LysR family [Neisseria sp. oral taxon 014 str. F0314] Length = 298 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SGSFT AAEQL +S + S+ +S LE + KL +R++R L LTE G + + Sbjct: 7 LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENSIKAKLLHRNSRNLHLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+T + + P G LR+ + NL+ L E+ YP++ + L+ Sbjct: 67 RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLISNWLVEYRERYPEVTLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D A+R+ K + S SLI + L I A+P YL P + +E Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIIKPLAKIQFVLLASPDYLAKHGTPQTPEEAM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLGSGIAL 243 H I +P + N + R GE I L Q ++ L I + G+GIA Sbjct: 186 HHPAI-----LPSYTDQRN-MEITHRETGEKSILTLNPVIQCDNTLMIRELIRTGAGIAY 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + V+ + L R++ D + + Y + + K+++F +F+ Sbjct: 240 QPLWSVRQDLAEGRLARLLPDYRVLTVQLNAVYVDRAFLSAKVRSFIDFL 289 >gi|260884544|ref|ZP_05896158.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260874072|gb|EEX81141.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] Length = 293 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P S Sbjct: 121 TIQLVPMPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H LI + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|300697765|ref|YP_003748426.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074489|emb|CBJ54040.1| putative transcription regulator protein, LysR family [Ralstonia solanacearum CFBP2957] Length = 314 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA+ L L +++++ + LE +G++L +R R + +T G+ + Sbjct: 7 MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE T+ +S+ G LRI +G+ LL +++F YPD+Q+++ Sbjct: 67 ERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHNAYPDLQLEVG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DCA+R+ + +Q S+L+ R++ + M A+P YL P ++++L Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLARYGTPKTLEDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + + P+ +W +D G+ +I S + VN S M + G G+ Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + LV ++ D I+ S V YP + K++ F +++ Sbjct: 241 TARFLAYEHLMSGQLVEVLPDYISESLPVSVIYPHNRHLSPKVRVFVDWV 290 >gi|190892094|ref|YP_001978636.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190697373|gb|ACE91458.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 297 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 6/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F VAR SFT AA +L +SQS++S I GLE +G++L R R ++ TE G + Sbjct: 7 DDLIAFLAVAREQSFTKAAAKLGVSQSALSHTIRGLEARLGLRLLTRTTRSVSPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E++ L KP+G +RI ++L L+ FL YPD++I+ Sbjct: 67 LLVSIGPRFDEIESSLTALSAFRDKPAGTIRINAGEHAANSVLWPALERFLPEYPDVRIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+D DI + D +RL + + + R + M AP Y +PL+ + Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMVAVRIGPDMRMAVVGAPTYFDGRPKPLTPHD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALL 244 L HN I +P + W D R+ V + +++ ++ + G+G+A L Sbjct: 187 LTDHNCINL--RLPTYGGVYVWEFEKDGRELNVRVEGQLVFNNIALRLKAALAGTGLAYL 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P+ V+ +N LVR++ED P + YP Sbjct: 245 PEDAVQAHLENGQLVRVLEDWCPPFPGYHLYYP 277 >gi|149915358|ref|ZP_01903885.1| transcriptional regulator, LysR family, putative [Roseobacter sp. AzwK-3b] gi|149810647|gb|EDM70488.1| transcriptional regulator, LysR family, putative [Roseobacter sp. AzwK-3b] Length = 295 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 24/295 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G + Sbjct: 1 MEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + PSG LRI+ D G N L L FL +PDI + ++ Sbjct: 61 DRALRVLNDAGEADALVSSMQSAPSGLLRISVATDFGVNHLSPVLGGFLEEFPDISVNMV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ +++ + D A+R+ + ++ SSL RKL A+P YL+ P I +L+ Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSSLRARKLTETTKRMIASPAYLQKYGRPAKIDDLN 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 +H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 180 EHRLLHYTSQANGSV----WKLTA--PSGEKRQVRTAGGLSVNDGQSLLNAAISGLGIAY 233 Query: 244 LPDYI----VKDNPNLVRIMEDVIT--PSFT--VYFCYPEALKNTGKLKAFRNFI 290 LP ++ ++D ++EDVI P T +Y YP K++AF +F+ Sbjct: 234 LPSFLYAKAMQDG-----LVEDVIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 283 >gi|260777888|ref|ZP_05886781.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260605901|gb|EEX32186.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 294 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 13/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD + F VA + SFT AA++L S + ISR++S LE + +KL R R +++TE G Sbjct: 3 NWDGVSEFVAVAETQSFTAAAKKLDTSVAQISRRVSALEERLAVKLLNRTTRKVSVTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + P G L++ + G+ L L +FL YP + Sbjct: 63 QVYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGETHLAPLLLDFLESYPQVD 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L N+ ID+ D AIRL + +Q SSL+ ++L + ++ +P YL EP ++ Sbjct: 123 LDLNLTNQKIDLIEMGVDVAIRLGR-LQDSSLVAKRLSSRQLYVCGSPDYLARYGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL+ H + G + D+ W + R+S + NS +++ G G+ Sbjct: 182 SELESHQCL-VGSI------DY-WRFKESKREKSLRVSGRIHCNSGSALLDAAKRGLGLV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LPDY V+ D+ L+ ++ D ++ YP+ + K++ +F+ K Sbjct: 234 QLPDYYVREGLDSGELIEVLSDYRDDREGIWALYPQNRNLSPKVRLLIDFLAEK 287 >gi|157964020|ref|YP_001504054.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157849020|gb|ABV89519.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 304 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 7/293 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F VA S F+ AA L +S+S++S++I+ LE ++G +LFYR R L+LTE G Sbjct: 4 FNAIPIFVAVADSAGFSSAARVLGISKSAVSKRITQLEQQLGARLFYRSTRNLSLTEAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ S+ + + + E +P G L+I + +GQ L + EF+ YP+IQI Sbjct: 64 RYYQYASQANRAAKQAEDAVSELQGEPKGLLKIQVPMTIGQMHLASLIPEFIERYPEIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183 L++D+ +I++ D AIR + S+LI R LV +H +P + + R+ L S Sbjct: 124 DLVMDDDEINLIEQGFDLAIRADDLV-DSNLIARLLVPLHSVVCVSPSFYQKHRQQLTSP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L N I + K + + + A +VN+ ++ + G G A Sbjct: 183 SQLADLNCILYS--YSKNADVWQFNANNGDEFKVKVTGNYRVNNSAALRDAVIAGMGAAR 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LP ++ +LV I +D PS + YPE K++ F +++ K Sbjct: 241 LPTFVAGAAIQRGDLVAIFKDYTMPSKKLNAIYPERHYLPAKVRVFLDYVIEK 293 >gi|114565210|ref|YP_752724.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114336503|gb|ABI73885.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] Length = 288 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 137/277 (49%), Gaps = 19/277 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA + SFT A ++L +S + +SRQIS LE + KLFYR R ++LTE+G+ Sbjct: 4 WEGIFEFVAVAETDSFTVAGKRLSISTAQVSRQISQLENRLNTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ +V + L+ + + KP G +RI + G+ + + +F+ YPDI++ Sbjct: 64 VYYQHCRQVLNSLDEAERAISSLKDKPQGLIRITAPVTYGEKFIMPIVIDFMQQYPDIEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ +D+ D AIRL + + +S+++ ++L + + AAP Y+ P ++ Sbjct: 124 ICELTNQQLDLVDGGYDLAIRLGR-LTNSTMMAKRLTSRSQYVCAAPSYIAKYGTPYALS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 EL +HN + +E G+P+ L +S LS++ + G G Sbjct: 183 ELSQHNCLIGSQSHWHFVEQ-----------GKPKTVKVHGSLACSSGLSLLNAAICGLG 231 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 I LP Y V D LV ++ P ++ YP Sbjct: 232 IVQLPGYYVNDAIAEGLLVVLLAPFQQPKEGIWALYP 268 >gi|311695639|gb|ADP98512.1| transcriptional regulator, LysR family protein [marine bacterium HP15] Length = 298 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 141/287 (49%), Gaps = 24/287 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AA+ L ++ +++S+ I+ LE ++ +L R R + LT+ G Sbjct: 9 MNIFRRVAELGSFTRAADDLEITAATVSKHIAFLERDLDTRLINRTTRRMNLTDAGFAFL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + T + +LE ++E + +P G +R+ + G + + FL +P+I I L Sbjct: 69 KRTQALLDELEDAELEARGFQAEPKGTIRLNVPMSFGLTHISEAIDSFLNRFPEIDIDLQ 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D AIR+R + SSL+ R L A+P YLK+ E + +L Sbjct: 129 LSDRMVDLVEQGVDIAIRVRSSLADSSLMARPLRKSRNIVCASPEYLKDVPEVHAPSDLA 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRI---SCLQVNSYLSIMQYCVLGSG 240 HN +TF DRP +G+ + + +S L+I Q + G+G Sbjct: 189 GHNCLTF--------------TLHDRPRVWKLGDQEVMVSGNFRTDSSLAIRQSLLSGAG 234 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 I LP ++V+++ +L+ ++ D +TV+ +P K K++ Sbjct: 235 IGYLPRFLVQEDIESGSLIPLLPDYPPEPYTVFALFPPGRKQPTKVR 281 >gi|86135842|ref|ZP_01054421.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] gi|85826716|gb|EAQ46912.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] Length = 295 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 15/290 (5%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL V F + GSF AAE L +S + +SR+I LE +G L R R ++LT+ Sbjct: 2 DKLSVMNAFRRIVERGSFARAAEDLRVSPALLSREIKLLEESLGTVLLTRTTRSMSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + S + + + +++ + + G L++ + GQ ++ L YPD+ Sbjct: 62 GQLFYDEASGILDAVFQVETRIRDGAGEIRGHLKVNASSSFGQTVIAPILPGLFDAYPDL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L LD++ ID+ D +IR+R + S+L+ RKL +AAP YL++ P Sbjct: 122 RLTLSLDDRVIDMVEGGFDVSIRIRAAMPDSALVARKLGRTRQQVFAAPSYLESVGAPQK 181 Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 Q++ H +I F L + + TVD +P I +V + L + + G Sbjct: 182 PQDVVNHRVIGFLLADHLSAWTLHSPSETVTVDL---DPPI---RVGNSLVLRDLLIAGQ 235 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI LPD++ KD LVR++ D P+ +Y L K+ AF Sbjct: 236 GIGTLPDFVSKDAVARGELVRVLPDWELPAPEIYAVTASRLGMDAKVTAF 285 >gi|169796372|ref|YP_001714165.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213156892|ref|YP_002318937.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|215483833|ref|YP_002326058.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|301347052|ref|ZP_07227793.1| LysR substrate binding domain protein [Acinetobacter baumannii AB056] gi|301512725|ref|ZP_07237962.1| LysR substrate binding domain protein [Acinetobacter baumannii AB058] gi|301596705|ref|ZP_07241713.1| LysR substrate binding domain protein [Acinetobacter baumannii AB059] gi|332851972|ref|ZP_08433839.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332871703|ref|ZP_08440163.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169149299|emb|CAM87182.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|213056052|gb|ACJ40954.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213986037|gb|ACJ56336.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|332729549|gb|EGJ60887.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332731271|gb|EGJ62568.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 303 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 146/280 (52%), Gaps = 11/280 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V +GSF AAEQLHL++S+IS+ I+ LE ++G+ LF R R L++T Sbjct: 1 MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + + +++ L + + +G+LR++ + GQ + +F + Sbjct: 61 DEGALFYEHSRRALSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+++ +++++D+ + D IR+ ++ L+ + + M A+P YL Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 I++LD+H I FG M+ + D P+ + L +N +I + Sbjct: 181 EHIEDLDQHATIADPHFGQ-----MQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 +GIA LPD+++++ + LV++++ + + +F ++ +P Sbjct: 236 DAGIAWLPDWLIQNELQDGKLVQVLDAMSSTAFPIHLVWP 275 >gi|224825984|ref|ZP_03699087.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224601621|gb|EEG07801.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 295 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 31/305 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 +RVF+ VA GSFT A+++L LS+ S+ +S LE +G +L R R L LTE G+ L Sbjct: 4 MRVFHAVADGGSFTLASDKLGLSRGMASKYVSWLEEHLGTRLLNRTTRRLALTESGADYL 63 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 RV S + +++ + + E+S +P G LR++ + G L L EF YP + + L Sbjct: 64 ARVAS-ILAQVDEAEAQAAETSREPVGTLRVSAPLAFGVRRLGPILAEFNAHYPRLTVDL 122 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+++ D+ D D +R+ + S L+ R L + + AAP YL P + EL Sbjct: 123 LLEDRQRDMLEDGVDLTLRITTDLGQSQLVARALAPVRVVVCAAPAYLARHGTPATPAEL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--------LQVNSYLSIMQYCVLG 238 +H + + T+ P+ E R L N+ ++ G Sbjct: 183 ARHRCLRY---------------TLSEPVDEWRFGSERVKVSGPLAANNGDLLVDAARHG 227 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FL 292 GI P +++ D+ LV ++E P F +Y YP K++A +F+ F Sbjct: 228 MGIICEPTFLLGDDLKSGRLVPLLEGYPLPEFRLYALYPHRQYLPRKVRALVDFLADHFA 287 Query: 293 KARDW 297 DW Sbjct: 288 GEPDW 292 >gi|167583998|ref|ZP_02376386.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 296 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELGDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEAALGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G L + EFL +P + Sbjct: 61 GHEFYERAQRILAEVADAEQAMVARSTELHGSLKISAPLSFGITHLSPLIAEFLAAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D A+R+ P++ S+LI R L M A +P YL+ P + Sbjct: 121 RLNLDLTDRRVDLIGEGFDVALRI-GPLEDSTLIARPLGQSRMIACCSPAYLRRRGAPAA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +L +H + +G W VD G R +Q N+ + + G Sbjct: 180 PADLGEHVCLLYGR-----ERRVGWEFRVD---GAARTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP +IV D+ LV +++ P+ + +P+ + L+ F F+ Sbjct: 232 LGIALLPHFIVGAALDSGALVPVLDGYAPPALQLNAIFPQHREGFVTLRTFVAFL 286 >gi|110678302|ref|YP_681309.1| LysR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109454418|gb|ABG30623.1| transcriptional regulator, LysR family, putative [Roseobacter denitrificans OCh 114] Length = 302 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 140/293 (47%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F +V G FT AA++L +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 7 EMEAFAMVVDQGGFTDAAKKLGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL +PDI + + Sbjct: 67 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSEFLSDFPDITVNM 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 127 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPEKIDDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R L VN S++ + G GIA Sbjct: 186 NAHKLLHYSNQSSGNV----WKITA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LP ++ + ++ED I P +Y YP K++AF +F+ Sbjct: 240 YLPSFLYAEAME-KGLVEDAI-PDLPMEMQGIYAVYPPGRFTQPKVRAFIDFL 290 >gi|307945395|ref|ZP_07660731.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307771268|gb|EFO30493.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 293 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 8/261 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +RVF VAR+G A +L L+ ++++R+++ LE ++ +KLF R G LT++ Sbjct: 1 MNWDDVRVFLSVARTGQILAAGRRLGLNHATVARRLTSLEEDLSVKLFERSTSGCVLTDK 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS+ + ++ + E+ + V SG +RI G L L + +PD+ Sbjct: 61 GSRFLPRAEAIEAEMLAAEAEIADDEVSISGTVRIGAPDGFGVAFLAPRLGQLTEKHPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL+ + +S AD AI + +P + LI RKL + YA+ YL C P + Sbjct: 121 TVQLVPVPRSFSLSRREADIAITVERP-EHGRLIARKLTDYSLGLYASSSYLDTCPPPET 179 Query: 183 IQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++L H+LI DLI + N+ A + + ++ S L + G+GI Sbjct: 180 LKDLKDHSLIGAVEDLI--YSQALNYAADFAKDWS----ARFEIASALGQTEAVRAGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDV 262 +L +I + +P+LVR++ D+ Sbjct: 234 GVLHSFIARSDPDLVRLLPDI 254 >gi|238786633|ref|ZP_04630434.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC 33641] gi|238725001|gb|EEQ16640.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC 33641] Length = 302 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AA L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFAKVAECGSFTRAATMAGLPKSSVSQRISQLEQNLGIRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG LL +F YPD+ ++++ Sbjct: 68 VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLAADFQRQYPDVLLEVL 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D A+R KP Q SSLI R+L + A+P YL L ++LD Sbjct: 128 VSDTMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPRQLD 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLG-SGIAL 243 H +C+ W A + R E ++ L V L + C L GI L Sbjct: 187 IH----------RCIAHRAWQALILRRNEEFYRWQVPVLHVTDNLLYARECALNHGGITL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP ++ ++ N L+ ++ +Y YP N+ L F + + Sbjct: 237 LPAFLSREVVANGQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287 >gi|187920095|ref|YP_001889126.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718533|gb|ACD19756.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 295 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 145/289 (50%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + +FT AA +L LS+ +SR++ LE +G++L R+ R L +T+ G + Sbjct: 4 DDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDLGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + + P G LR++ + G L + FL + D++ + Sbjct: 64 FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMAHLSPLVAMFLREHGDVRFE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D AIR+ + S+LI +KLV I M A +P Y++ P + Sbjct: 124 MELSDRTVDVVGEGFDMAIRI-GSLPDSTLIGQKLVDIRMVACCSPGYVRRRGAPKVPGD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L++H+ + +G +W VD + L+ N+ + V G GI L Sbjct: 183 LERHSCLLYGH-----GGAVSWEFVVDGVTKGVEVHGPLRANNGELVRDAAVAGLGIVRL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+IV D + LV ++E + + +VY YP+ +++ ++AF F+ Sbjct: 238 PDFIVADALKSGQLVPVLEAFLPSATSVYAVYPQHRQSSLTIRAFVEFL 286 >gi|134293800|ref|YP_001117536.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136957|gb|ABO58071.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 298 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 132/289 (45%), Gaps = 14/289 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D L +F +A SGS + A L +SS+SR + LETE+G LF R R LT+ Sbjct: 1 MDQADLIIFLRLADSGSLSGTARTLKSPKSSVSRALVRLETEIGSALFDRSTRHFRLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L S H L+ Q + + +P G LRI TT Q L+ L EFL YP + Sbjct: 61 GKLLLPYASRAVHDLQEAQAIIDGYAGEPRGLLRINTTQSFAQGLVAPMLPEFLDRYPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L D+ +DI+ + D A+R+ + SSL+ R+L + + A+P YL P++ Sbjct: 121 TVELTTDSNYVDIAREGIDVAVRVGT-LPDSSLVARRLPPVELWLCASPSYLSRSGAPMA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSG 240 EL H L+ +D T+ PR S + + + Q VL G G Sbjct: 180 ASELHGHRLVVREAPTSWVFQDGQAELTI-----RPRGSAIIPD---AAAQKIVLEGGGG 231 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I LP Y+ LVR++ + ++ YP + K++ F Sbjct: 232 IGFLPSYLAAPALRAGTLVRVLPSLRREPIELHALYPTHRSMSAKVRVF 280 >gi|217971578|ref|YP_002356329.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217496713|gb|ACK44906.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 298 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 13/277 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A+++L LS+S++S++I+ LE +GI+L R R L+LTE G+ Sbjct: 4 FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLRRTTRSLSLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + E P G LR A + G+ + + EFL YP IQ+ Sbjct: 64 RYFDYVRPAVKLAEEGLDAISELQQAPQGNLRFAVPMVFGRLYIAPLIPEFLRRYPKIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RK+ A+P YL P + Q Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHAAPQTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L +HN + + + W T P G RI QVN+ +I Q + G GI Sbjct: 183 QLSQHNCLFYSYF----RDGVEW--TFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275 A LP ++V + R ++ D P +Y YP+ Sbjct: 237 ANLPRFMVDTDLQTGRLQALLADHPLPEHGIYTVYPQ 273 >gi|170732678|ref|YP_001764625.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169815920|gb|ACA90503.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 307 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 133/303 (43%), Gaps = 12/303 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++ F VA GS + AAE+L +S ++ SR ++ LE +G +L R R L LT+ G Sbjct: 4 WTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLTALEERLGARLVERTTRRLWLTDAGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + HR + +L + E+SV P+G LR+ ++ + L EF YP++ + Sbjct: 64 EYHRRCVAILTELSEADAAVNEASVNPAGTLRVTASVSFASIYIAPALPEFHRRYPNLNV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q++ N+ D D AIR R+ S + RKL A+P YL P + Sbjct: 124 QIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPATPD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H L+ + + F A + S L N I + G GI + Sbjct: 184 ALGEHRLLVYNLANDPYVLHFRHGAKKQSVTIK---SVLDANEGQVIRVAALAGLGILIQ 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK------AR 295 P YI+ D+ LV ++ D P+ TV Y K++ F F+ + AR Sbjct: 241 PLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLGLAR 300 Query: 296 DWK 298 WK Sbjct: 301 KWK 303 >gi|126172616|ref|YP_001048765.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|125995821|gb|ABN59896.1| transcriptional regulator, LysR family [Shewanella baltica OS155] Length = 298 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 137/277 (49%), Gaps = 13/277 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A+++L LS+S++S++I+ LE +GI+L +R R L+LTE G+ Sbjct: 4 FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E P G LRIA + G+ + + EFL YP IQ+ Sbjct: 64 RYFDYVRPAVKLAADGLDAISELQQAPQGSLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K D+ D AIR+ + + SSLI RK+ A+P YL P + Q Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHTVPHTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L +HN + + + W T P G RI QVN+ +I Q + G GI Sbjct: 183 QLSQHNCLFYSYF----RDGVEW--TFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGI 236 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275 A LP ++V+ + R ++ D P +Y YP+ Sbjct: 237 ANLPHFMVEADLQTGRLQALLTDHPLPEHGIYAVYPQ 273 >gi|87122067|ref|ZP_01077951.1| putative transcription regulator protein [Marinomonas sp. MED121] gi|86162614|gb|EAQ63895.1| putative transcription regulator protein [Marinomonas sp. MED121] Length = 299 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 150/291 (51%), Gaps = 10/291 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V + SF+ AA QL +++S++S+QI LE EVG++L R R L+LTE Sbjct: 2 DELRRIGVFTRVVETKSFSEAARQLGVAKSAVSKQIVQLEKEVGVRLLNRTTRSLSLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +R ++E+ ++ + EL+E +P+G LRI+ + G L +KE LYP + Sbjct: 62 GEIFYRHSAEIVNRTKIALSELKEYQNQPTGTLRISCPVSFGTEHLIPVIKEVRALYPLL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L+L+++ I++ + D AIR+ +Q S+L+ + + + +A+P YL P + Sbjct: 122 KIDLLLEDRIINMVEEGVDLAIRIGW-LQESNLVAKLVCETPVSVFASPEYLAQKGTPKT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L KH+ I+ +F + S L+ NS +++ G GI+ Sbjct: 181 PQDLQKHDWISLSLFSSPLTWEFE---KKGQKQSVQMHSQLKSNSVAAVIALSKSGQGIS 237 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + ++++ L ++ D +Y YP K++ F +F+ Sbjct: 238 ALTKFCLQNDFEKGLLQPLLTDYKLKPSGIYAVYPHREHVPPKVRIFIDFL 288 >gi|317406095|gb|EFV86358.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 312 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 146/299 (48%), Gaps = 23/299 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA+ LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++ P G+LR+ L + +L L F YPDIQ+ Sbjct: 64 VYYERVLRLLADMDDAETSLSSAAAVPRGRLRVDVPSPLARMILVPALPAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + + SL+ R++ + + YAAP YL+ P + Sbjct: 124 DMGVSDRIVDVIGENVDCVVRGGE-LTDQSLMARRVGDLQLRVYAAPAYLQRAGAPGHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQY 234 +L+ H ++ F G +P M D I G ++ N+YL+ Sbjct: 183 DLEDSHHRIVGFLWSRSGKPLPYAMH------RGDESIHAHGRYVVAVDDGNAYLAA--- 233 Query: 235 CVLGSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI LPDY+ +D+ LV + ED S +Y +P + KL+ F +++ Sbjct: 234 GLAGMGILWLPDYMARDHAARGELVPVFEDWRLDSMPLYIAFPPNRHVSAKLRVFIDWV 292 >gi|218662125|ref|ZP_03518055.1| probable transcriptional regulator protein, LysR family [Rhizobium etli IE4771] Length = 308 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 15/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 11 DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVMLIQRTTRKLSLTAQG 70 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE L + L E+ KP G L+I+ + LGQ + + +FL YP+IQ Sbjct: 71 RAYYDRCSEPLAHLIDAEQALTETQRKPEGLLKISVPVILGQEVFYEFISDFLKAYPEIQ 130 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L + N +D+ + D IR + ++ S+++ ++L + AAP YLK P Sbjct: 131 VDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPDYLKEKALPAKP 189 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 ++L H + L+ + W R + R+S + ++ + G GI Sbjct: 190 EDLKDHRCV----LLNGRNGEAEWHLVSGRKSADVRVSGPASSRDFDAVSAFTYRGHGIG 245 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298 LLP + L+R++ D +P V+ YP T + R +FL A + WK Sbjct: 246 LLPSTYCDEQIRRGALIRLLPDWSSPEIFVHAVYP-----TRRFLPLRLQVFLDALKAWK 300 >gi|238790140|ref|ZP_04633917.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia frederiksenii ATCC 33641] gi|238721809|gb|EEQ13472.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia frederiksenii ATCC 33641] Length = 300 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 153/298 (51%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V GSF+ AAEQL + S +SR + LE ++G+ L R R ++LT Sbjct: 1 MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKRLEGKLGVTLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R + + T + EL +S + P G LRI + + ++L + EF YP Sbjct: 61 QEGEHYFRRVQNILRDMATAENELLDSQLNPKGLLRIDASTPVVLHVLAPLMAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ I++ D AIR+ +Q S+L RKL+T + H A+P YL+ P Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHLLASPAYLRQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L H + F DL P W LA D + E S L N+ + + C+ G+ Sbjct: 180 QTVADLQHHVCLGFIDL-PVLNR---WPLAGPDGQLYEI-TSDLTSNNGETQRRLCLEGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++++ + +LV I+E+ V P VY+ +A+ N +L+ F +FI Sbjct: 235 GIACLSDFMIQQDLQRGDLVPILEEHTLPVAMPINAVYYS-DQAVSN--RLRCFIDFI 289 >gi|107028302|ref|YP_625397.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686296|ref|YP_839543.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105897466|gb|ABF80424.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652011|gb|ABK12650.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 305 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 12/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA +S +++SR ++ LE +G +LF R +R L+LTE G Sbjct: 6 DFEGLAMFAKVAEHGSFAAAARSTGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+Y + E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D A+R+ + SSL+ R+L + AAP YL+ P Sbjct: 126 IDLHLSDASVDLIADGFDAALRIAA-LPDSSLVARRLCAVTQFVVAAPEYLRREGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL + + + F A + P G L+V + +++ + G Sbjct: 185 LELADRPCLPYAYRARSAVWRFTNDAGDEESVMPTGP-----LRVTNADALLPTLLDGLA 239 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LP++I + + L I+ D + +YF P A K+ A ++ Sbjct: 240 IAELPEFIAGEYLADGRLEAILPDWSLTTGGLYFVTPSARARPAKVTALSDYF 292 >gi|145301024|ref|YP_001143865.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853796|gb|ABO92117.1| transcriptional regulator, LysR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 301 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 15/299 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 W+ + F VA G FT AA +L +S + +SRQ++ LE + KL R R + LTE Sbjct: 2 LGWEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTEL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +R ++ L ++ + P G LRI + G++ + + +F++ +P + Sbjct: 62 GEIYYRHCRQLLDNLYEAELAVGRHQAVPQGSLRITAPVSYGESRIAPLVNDFMVRFPQL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L N+ +D+ + D AIRL ++ SSL+ RKL + A+P Y P S Sbjct: 122 EVTLNLTNQLLDLVHEGYDLAIRLGH-LKDSSLVARKLAQRVPYVCASPAYTARHGMPNS 180 Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + EL +H L+ GD W T+D RP LQ NS +++ + G G Sbjct: 181 LSELTRHTCLVGNGD---------EWYFTLDGRPHSVRVHGLLQCNSGHALLDAALKGIG 231 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 I LPDY V D+ L+ ++ ++ P ++ YP + K++ +++ + D Sbjct: 232 IIQLPDYYVSDHLARGELIELLPELRAPEEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290 >gi|327480535|gb|AEA83845.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 297 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 16/293 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F VAR+G T AA +L + +++SR++ LE +G++LF R G LTE Sbjct: 1 MDWDNLRYFLEVARAGRLTTAARRLAVDHTTVSRRLQALEKSIGLQLFLREPGGYKLTEA 60 Query: 63 GSK-LHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G L RV + +E+ + ++ S SG++RI T G +L G L Sbjct: 61 GRNLLPRVEA-----MESASVAIEHSLPSMGDGLSGQVRIGATEGYGTVMLAGQLTGLSR 115 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP + I L+ + + +S AD I L +P + +I R L + YA+P YL Sbjct: 116 RYPHLNIDLLALPRAVRLSRHEADIVITLERPERGPFIITR-LTDYVLRLYASPAYLDEH 174 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 S ++L +H +++ D + E L +D I +PR L+ S L+ + + Sbjct: 175 PPIRSREDLAEHRFVSYVDDLLFSKE----LLFLD-GIADPRSVGLRSTSLLAQQEAVAM 229 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA+LP + +P L ++ + ++ + T + P K+ +++ +++ Sbjct: 230 GAGIAILPAFSADADPRLRLLLPEEVSFTRTFWMLMPIEFKDLARMRTTWDYL 282 >gi|146310405|ref|YP_001175479.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145317281|gb|ABP59428.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 300 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 147/299 (49%), Gaps = 19/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AA QL + S+ISR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELVIFVAVVESGSFSRAAVQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAETEIIETRSTPRGLLRIDAATPVVLHFLLPLVKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ P Sbjct: 121 EVSLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKMIASPSYIARYGNP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPR--ISCLQVNSYLSIMQYCVL 237 ++ +L +H + F + P + W +A D G+P IS L NS ++ Q C+ Sbjct: 180 TNVDDLKRHVCLGFTE--PVSLN--TWPIAGSD---GQPHEIISGLSSNSGETLKQLCLS 232 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA L DY++ + +LV I+ D P F+ + A+ +++AF +F+ Sbjct: 233 GNGIACLSDYMINKELEKGDLVEILADQRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|330958541|gb|EGH58801.1| LysR protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 306 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 17/297 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ I LE + +KL R R + LT G+ Sbjct: 4 FDAMQAFAQVVETGSFTKAAGTLHMSKTSVTQLIQQLEARLRVKLLNRTTRRVNLTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++ P G+LR+ + LL L F YPDIQI Sbjct: 64 VYYERVVSLLADMDDAETSLSSAASLPRGRLRVDVPSPMASLLLMPALPAFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ ++ DC +R + I SL+ R++ + + YAAP YL P Sbjct: 124 DMGVSDRIVDLIGEHVDCVVRGGE-ITDQSLMARRVGDLQLGVYAAPDYLLRMGTPTHPH 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ + G +P M V G ++ N+Y++ + Sbjct: 183 ELEDSAHRVVGYLWARTGKALPYAMRRDGEQVHVQ---GRYTLAVDDGNAYIAA---GLA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GI LPDY+ + N LVR+ +D S +Y +P + K++ F ++I Sbjct: 237 GMGILWLPDYMARTHLQNGTLVRLFDDWRLDSMPMYVAFPPNRHVSLKVRVFIDWIM 293 >gi|255263293|ref|ZP_05342635.1| LysR substrate binding domain protein [Thalassiobium sp. R2A62] gi|255105628|gb|EET48302.1| LysR substrate binding domain protein [Thalassiobium sp. R2A62] Length = 301 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L EFL + DI + + Sbjct: 66 YDRARRVLNDAGEADSLVTSMQSAPSGLLRISVATDFGVNHLSPTLGEFLNEFQDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETTRRMVASPEYFEQYGRPEKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + + W T P GE R L VN S++ G GIA Sbjct: 185 NEHKLLHYSNQSNGAV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNAATSGLGIA 238 Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D LV + D+ + +Y YP K++AF +F+ Sbjct: 239 YLPSFLYADALEQGLVEEAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|330954094|gb|EGH54354.1| LysR protein [Pseudomonas syringae Cit 7] Length = 311 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ + LE + +KL R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAASTLHMSKTSVTQLVQQLEARLRVKLLNRTTRRVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++ P G+LR+ L LL L F YPDIQI Sbjct: 64 VFYERVVRLLADMDDAETSLSSATSLPRGRLRVDVPSPLASMLLMPALPGFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + I SL+ R++ + + YAAP YL+ P+ Q Sbjct: 124 DMGVSDRMVDLIGENVDCVVRGGE-IADQSLMARRVGDLQLGVYAAPDYLQRMGTPVHPQ 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ + G +P M V G ++ N+Y++ + Sbjct: 183 ELEDSAHRIVGYLWAGTGKALPYAMHRAGEKVHVQ---GRYTLAVDDGNAYVAA---GLA 236 Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ ++ LV + ED S +Y +P + K++ F ++I Sbjct: 237 GMGILWLPDYMARPYRERGALVPLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292 >gi|157147196|ref|YP_001454515.1| hypothetical protein CKO_02975 [Citrobacter koseri ATCC BAA-895] gi|157084401|gb|ABV14079.1| hypothetical protein CKO_02975 [Citrobacter koseri ATCC BAA-895] Length = 304 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELVIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + + + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQDMAAAETEVMETRSTPRGLLRIDAATPVILHFLMPLVKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I+EL +H + F + P + W +A D + E S L NS ++ Q C+ G+ Sbjct: 180 ETIEELKQHLCLGFTE--PASLN--TWPVACSDGQLHEIS-SGLSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|161519920|ref|YP_001583347.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353903|ref|YP_001949530.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221200900|ref|ZP_03573941.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2M] gi|221207095|ref|ZP_03580106.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2] gi|221210235|ref|ZP_03583215.1| LysR substrate binding domain protein [Burkholderia multivorans CGD1] gi|160343970|gb|ABX17055.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189337925|dbj|BAG46994.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221169191|gb|EEE01658.1| LysR substrate binding domain protein [Burkholderia multivorans CGD1] gi|221173169|gb|EEE05605.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2] gi|221179472|gb|EEE11878.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2M] Length = 334 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 148/289 (51%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLR+ +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQNNNRKPHGKLRVDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ + AAP YL+ EP +I++L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGVSVAAPAYLEKYGEPQTIEDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E +++ + VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIDWSFLIDGKEVEVKMNGIVSVNDADAYVTCGLEGFGLIQPPL 243 Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 ++V + R+ E + P F + YP + + K++ F +++ Sbjct: 244 FMVLPHLREGRLKE--VLPGFKPLPMPISVVYPHSRHLSPKVRVFVDWV 290 >gi|90022419|ref|YP_528246.1| LysR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89952019|gb|ABD82034.1| LysR, substrate-binding [Saccharophagus degradans 2-40] Length = 298 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 14/282 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SFT AA+ L + +++S+ I+ LE ++G +L +R R L L++ G Sbjct: 9 MKIFRRVAELKSFTLAADDLDTTPATVSKHIAFLERDLGTRLIHRTTRRLNLSDAGLTFL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + T E+ LE ++E Q P G +R+ + G L + FL YPDI I L Sbjct: 69 KRTQELLDALEEAELEAQGYQTSPKGSIRLNVPMSFGLTHLTEAVDSFLRRYPDIDIDLQ 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D AIR+R + SSL R L AAP YL E +L Sbjct: 129 FSDRLVDLVEQGVDLAIRVRHSLADSSLQARALKQSRNVVCAAPSYLAQNPEIRCPDDLV 188 Query: 188 KHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 HN L T D PK E N V + +S L+I + + G+GI +P Sbjct: 189 HHNCLLYTLHDR-PKVWELGNQEVIVG--------GNFRTDSSLAIRECLIAGAGIGFIP 239 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 ++V+ +N LV ++ D +TV+ +P K K++ Sbjct: 240 RFLVENDLENQKLVPLLTDFPAKPYTVFALFPPGRKQPAKVR 281 >gi|146282290|ref|YP_001172443.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501] gi|145570495|gb|ABP79601.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501] Length = 296 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 16/293 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F VAR+G T AA +L + +++SR++ LE +G++LF R G LTE Sbjct: 1 MDWDNLRYFLEVARAGRLTTAARRLAVDHTTVSRRLQALEKSIGLQLFLREPGGYKLTEA 60 Query: 63 GSK-LHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G L RV + +E+ + ++ S SG++RI T G +L G L Sbjct: 61 GRNLLPRVEA-----MESASVAIEHSLPSMGDGLSGQVRIGATEGYGTVMLAGQLTGLSR 115 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP + I L+ + + +S AD I L +P + +I R L + YA+P YL Sbjct: 116 RYPHLNIDLLALPRAVRLSRHEADIVITLERPERGPFIITR-LTDYVLRLYASPAYLDEH 174 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 S ++L +H +++ D + E L +D I +PR L+ S L+ + + Sbjct: 175 PPIRSREDLAEHRFVSYVDDLLFSKE----LLFLD-GIADPRSVGLRSTSLLAQQEAVAM 229 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA+LP + +P L ++ + ++ + T + P K+ +++ +++ Sbjct: 230 GAGIAILPAFSADADPRLRLLLPEEVSFTRTFWMLMPIEFKDLARMRTTWDYL 282 >gi|288962557|ref|YP_003452852.1| transcriptional regulator [Azospirillum sp. B510] gi|288914823|dbj|BAI76308.1| transcriptional regulator [Azospirillum sp. B510] Length = 301 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 147/292 (50%), Gaps = 15/292 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ LR F VAR+G+ T AA++L S++SR+I+ LE + + LF R G TLT Q Sbjct: 4 FNWNDLRFFLAVARAGTLTTAAQRLRADHSTVSRRITALEDALRVTLFERRPSGFTLTPQ 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + Q + + + +G +RI G + L + +P++ Sbjct: 64 GERLKQTAEVMESAAFLAQGMVADGDLALAGAVRIGAPDGFGSSFLAPRIGALCERHPEL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181 ++QL+ + +S AD AI L +P Q L RKL + Y YL+ R P+ Sbjct: 124 EVQLVAMPRVFSLSKREADIAISLSRP-QEGRLYARKLTDYRLGLYGTRAYLE-ARPPIH 181 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLG 238 +L H+ I + DLI + +++ T IGE PRI + +S ++ ++ + G Sbjct: 182 GRADLRGHSFIGYIDDLI--FAPELDYVET----IGEVAPRI---KSSSLVAQLKATLAG 232 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +G+ +LP +I + P+L+ ++ +T + + + E L++ ++ ++I Sbjct: 233 AGLCMLPAFIAQGEPDLLPVLAAEVTITRSFWLIVHEDLRSLARISMTADYI 284 >gi|56460872|ref|YP_156153.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56179882|gb|AAV82604.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR] Length = 303 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + F VA SFT AA QL LS + +SR I+ LE + ++L YR R ++LTE+G Sbjct: 4 WQGISEFAAVAEQQSFTAAARQLRLSVAQVSRNIAALEHRLQMQLLYRSTRSVSLTEEGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + L +Q+ + +P G +RI + G+ + L +FL +YP+ ++ Sbjct: 64 LYLPHCQHLVASLRDADQAIQQRTQQPQGLIRITAPVYYGERFIAPLLNDFLHIYPECRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ +D+ D AIRL + + + L RKL + +P Y + P I Sbjct: 124 DFQLTNEQVDLIEGSYDVAIRLGQ-LGNPRLRARKLGSRRHFVVGSPAYFEEFGRPQDIN 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD H T G + + L TV RP S L N+ L++ + G G+A+L Sbjct: 183 ALDAHRCFT-GTVRQWRFQVEGKLETV-RP-----ESYLHCNNGLALRDAAMKGLGLAML 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V D N L ++ D P ++ YPE + K++ +++ Sbjct: 236 PDYYVTDSLANGQLEEVLADYRQPDDGIWALYPENRQVIPKVRVLLDYL 284 >gi|187924383|ref|YP_001896025.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715577|gb|ACD16801.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 345 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 143/289 (49%), Gaps = 15/289 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VA GSF A E+L + +S++SR + LET++ +LF R R LT +G + Sbjct: 35 AFMAVASEGSFAKAGERLGVGRSAVSRNVQKLETQLSTRLFLRTTRSTQLTREGQRFFEN 94 Query: 70 TSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + V H +E L+ P G +RI++T+ G+ ++ L++F+ YPDI + L+L Sbjct: 95 CHQGVSHLVEAMNDMLELREGPPRGLVRISSTVGFGRKVVGPLLEQFVKAYPDIAVDLLL 154 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 D++ +D + + D A R + I+ SS+I ++L+ + M AAP Y+ P ++ EL + Sbjct: 155 DDRPMDFASEQIDVAFRSGR-IEDSSIIAKQLIPMQMALCAAPSYVAAHGLPQTLDELCQ 213 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIALL 244 H+ I F + F W VD G R + L +N ++ + GSGIA + Sbjct: 214 HDCINFRLSSGRV---FEWEFKVD---GHVRKYLPTARLTLNDADLVLHAVLQGSGIAQM 267 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y ++D+ LV + + Y CY +++ F +F+ Sbjct: 268 AGYQIRDHIAANELVVALARHVPDDGGHYICYLSRRHLPTRIRVFIDFM 316 >gi|209694640|ref|YP_002262568.1| transcriptional regulator AphB [Aliivibrio salmonicida LFI1238] gi|208008591|emb|CAQ78766.1| transcriptional regulator AphB [Aliivibrio salmonicida LFI1238] Length = 291 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 141/288 (48%), Gaps = 9/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V +GS+T A+ + + ++I+R+I LE + I+L RHAR L+LTE G K Sbjct: 4 DDLNLFRQVVDNGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTESGQK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + L L E +GKL IA +L + ++Q L +F+L+YP+I I Sbjct: 64 FYDECSPILSNLVNISEYLSEECRGAAGKLNIAAPSNLTKRMIQPILNQFMLIYPNININ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + N+ + D R+ K + SSLI R++ ++ A+P YL+ EP QE Sbjct: 124 LTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPIYLEQRSEPTHAQE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ L+ + + + G S L V I C G GI L+P Sbjct: 183 LHDHSLLKGHPLMRWRLTNIEGESVTITDAGRFEASELNV-----IRMACSDGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D ++ ++ +LVR+++D +Y Y K++ F +F+ Sbjct: 238 DIMISKYLEDGSLVRVLKDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285 >gi|204926793|ref|ZP_03217995.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323458|gb|EDZ08653.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 304 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 147/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 S+++L H + F + P + W +A D + E + C + NS ++ Q C+ G Sbjct: 180 ESVEQLKLHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|92112889|ref|YP_572817.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795979|gb|ABE58118.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 306 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 144/292 (49%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMRAFARVVETGSFTKAADTLHMSRTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + L ++ +P G+LR+ L + +L L EF YPDIQ+ Sbjct: 64 AYYERVLRLLADLDDAETSLSGAASEPRGRLRVDVPSPLARMILIPALPEFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +DI + DC +R + + SL+ R++ + + YA+P YL+ P Sbjct: 124 DLGVSDRMVDIIDEKVDCVVRGGE-LTDQSLMARRIGDLPLGVYASPSYLERAGSPAHPG 182 Query: 185 ELDK--HNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L+ H ++ F G K ++ + G +S NSYL+ + G GI Sbjct: 183 DLENTHHRVVGFLGSRFGKPFAMHRREESI-KVQGRYVLSTDDGNSYLAA---GLAGLGI 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY+ ++ + LV + ED +Y YP + KL+ F +I Sbjct: 239 LWLPDYMAREHLASGELVALFEDWRLDPMPLYLAYPPNRHVSAKLRVFIEWI 290 >gi|282599963|ref|ZP_05972517.2| transcriptional regulator, LysR family [Providencia rustigianii DSM 4541] gi|282567011|gb|EFB72546.1| transcriptional regulator, LysR family [Providencia rustigianii DSM 4541] Length = 330 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 149/306 (48%), Gaps = 14/306 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + D+ + +F V GS T AA+ LH+++S++S+++ ET+ GI+L R R L LT Sbjct: 23 IDIDYSLIPIFITVVEQGSLTKAADTLHMTKSAVSKKLMAFETQTGIRLITRSTRHLQLT 82 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + + + + G L+I+ + G L L EFL +P Sbjct: 83 EAGEIYYSWLKKAHETINDGREAIARYADTVDGILKISAPMIFGTLHLNKLLPEFLKRWP 142 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++I D+K +D+ + D AIR+ + +Q SSLI R L A+P +L+ P Sbjct: 143 QLRTEIIFDDKLVDLIGEGFDIAIRIGE-LQDSSLISRTLSPCRSVLCASPAWLEERGIP 201 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLG 238 ++QEL +HN + + F L R P G R N+ LS+ Q + G Sbjct: 202 KNLQELAEHNCLLYSYFQAGQTWSFTHLGEKVRFTPKGNFR-----ANNSLSLHQAALQG 256 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FL 292 G+ LP +IV + L+ ++ D P +Y YP+ K+ AF +F+ F Sbjct: 257 LGVCQLPQFIVAPDILAGRLIPLLPDYHLPLHHIYAVYPDKEFLPKKVSAFLDFLQEKFY 316 Query: 293 KARDWK 298 K+ D++ Sbjct: 317 KSSDYQ 322 >gi|238799160|ref|ZP_04642613.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia mollaretii ATCC 43969] gi|238717001|gb|EEQ08864.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia mollaretii ATCC 43969] Length = 300 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 151/300 (50%), Gaps = 21/300 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V GSF+ AAEQL + S +SR + LE ++G+ L R R ++LT Sbjct: 1 MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVMLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R + ++ T + E+ ++ + P G LRI + + ++L + EF YP Sbjct: 61 QEGEHYFRRVQNILREMATAENEILDNLLNPKGLLRIDASTPVVLHILAPLMAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ I++ D AIR+ +Q S+L RKL+T + H A+P YLK P Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLLTSYRHILASPTYLKQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPR--ISCLQVNSYLSIMQYCVL 237 ++ +L H + F DL P W LA D G+P S L N+ + + C+ Sbjct: 180 QTVADLRNHLCLGFNDL-PVLNR---WPLAGSD---GQPYEITSDLTSNNGETQRRLCLE 232 Query: 238 GSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GIA L D++++ + P LV V P VY+ +A+ N +L+ F +FI Sbjct: 233 GNGIACLSDFMIQQDLQRGDLIPILVEQTLPVAMPINAVYYS-DQAVSN--RLRCFIDFI 289 >gi|238762653|ref|ZP_04623622.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia kristensenii ATCC 33638] gi|238698958|gb|EEP91706.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia kristensenii ATCC 33638] Length = 305 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 151/298 (50%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V GSF+ AAEQL + S +SR I LE ++G+ L R R ++LT Sbjct: 4 MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTIKKLENKLGVTLLNRTTRQISLT 63 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R + ++ T + E+ ++ + P G LRI + + +++ + EF YP Sbjct: 64 QEGENYFRRVQNILREMATAENEILDNQLNPKGLLRIDASTPVVLHIIAPLMAEFRQRYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ I++ D AIR+ +Q S+L +KL+T + H A+P YLK P Sbjct: 124 LVTLSLVSSETFINLIERKVDIAIRV-GSLQDSTLRAKKLMTSYRHILASPAYLKQNGTP 182 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L H + F DL P W LA D + E S L N+ + + C+ G+ Sbjct: 183 QTTADLQHHLCLGFNDL-PALNR---WPLAGADGQLYEIN-SDLTSNNGETQRRLCLEGN 237 Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++++ + +L+ I+++ V P VY+ E + +L+ F +FI Sbjct: 238 GIACLSDFMIQQDLQRGDLIPILQEHTLPVAMPINAVYYSDQEV---SNRLRCFIDFI 292 >gi|299069520|emb|CBJ40789.1| putative transcription regulator protein, LysR family [Ralstonia solanacearum CMR15] Length = 315 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 148/292 (50%), Gaps = 13/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA+ L L +++++ + LE +G++L +R R + +T G+ + Sbjct: 7 MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE T+ +S+ G LRI +G+ LL +++F YPD+Q+++ Sbjct: 67 ERCMRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPDLQLEIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DCA+R+ + +Q S+L+ R++ + M A+P YL+ P ++++L Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLERYGTPRALEDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + + P+ +W +D G+ +I S + VN S M + G G+ Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 ++ + + LV ++ D ++ V YP + K++ F +++ + Sbjct: 241 TARFLAYEHLQSGQLVEVLPDYVSEPLPVSVIYPHNRHLSPKVRVFVDWVAM 292 >gi|56414624|ref|YP_151699.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363552|ref|YP_002143189.1| hypothetical protein SSPA2344 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128881|gb|AAV78387.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095029|emb|CAR60575.1| hypothetical transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 304 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 128/251 (50%), Gaps = 9/251 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+L Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLA 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKHFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +++EL +H + F + P + W +A D + E I C + NS ++ Q C+ G Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IKCGISSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIV 249 +GIA L DY++ Sbjct: 234 NGIACLSDYMI 244 >gi|152996308|ref|YP_001341143.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150837232|gb|ABR71208.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 303 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 7/295 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +D + +R F VA + SFT AA+QL ++QS ISR ++ LE+++G++L +R+ R L LT Sbjct: 5 MEYDLNAVRQFIKVAENLSFTVAAQQLDVTQSGISRAVNRLESQLGLRLLHRNTRNLKLT 64 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + LE EL E ++P G L+I+ G+ ++ + + L YP Sbjct: 65 VDGELFLKRVKPLVGGLEEAHQELLEYGLEPKGCLKISAPSAFGRAVVMPIIAKLLDEYP 124 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+L+L ++ +D+ + D IR IQ S +I R L A+P YL P Sbjct: 125 QLTIELVLTDRIVDLVGEGFDAVIR-SGNIQDSRVIARPLKAAGWVTVASPKYLNTYGSP 183 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +++EL HN + + P + F W +R P L V+ +++ +L Sbjct: 184 KTLEELPAHNCMQVRN--PVTGQLFPWTFRNNERDKDFPIRGSLVVDHGDPLVEAALLSI 241 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A L + V+D + L ++ + S + YP A + KL FR+ + Sbjct: 242 GMAQLMTFFVEDYLKDGLLTPVLNEYARSSTPLTLLYPSARHRSAKLMMFRDALL 296 >gi|90407716|ref|ZP_01215895.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3] gi|90311185|gb|EAS39291.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3] Length = 308 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 151/297 (50%), Gaps = 23/297 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M FD + L +F V SFT AA L +++S++SR+I+ LE +G +L R R LTLT Sbjct: 1 MGFDLNTLTIFTQVVNCNSFTKAAINLGITKSTVSRKIAELEDHLGARLLTRSTRNLTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G ++ TS++ +++ +I++ ES G + I ++ +L++ + +F+ ++P Sbjct: 61 KEGINFYQSTSQILDRIDQAEIDVMESHDFIRGTMSIVIPVEAENSLMRECITDFMKIHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ I+L + N+ +DI + D I+ ++ SSLI R A+P YL+ EP Sbjct: 121 ELIIKLEISNRKVDIISEGVDFIIQAGN-VEDSSLIARVFYHATRILIASPEYLERNNEP 179 Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYC 235 +++++L H I L+T+ G +S L +VN+ + + C Sbjct: 180 MTLKDLKAPHQQIV--------------LSTMKHGTGGHVLSGLPYRFKVNTLSASLNAC 225 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 V G GIA + + + +D L ++ ++ + F YPE T +L+ F +F Sbjct: 226 VKGLGIAYMSELLCRDLIKEGKLKHLLPNIYAEKVPINFIYPERKLMTKRLRKFLDF 282 >gi|114561733|ref|YP_749246.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114333026|gb|ABI70408.1| transcriptional regulator, LysR family [Shewanella frigidimarina NCIMB 400] Length = 303 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 144/290 (49%), Gaps = 9/290 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA ++ +S+ISR+++ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAAREIGQPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + H++E + ++ + SG LRIA + Q+++ F+ LYP+I+ Sbjct: 63 ALFFQHCDSISHEIEAAKATIENTHNDISGALRIAIPVSFSQDVIGHLCSSFMRLYPNIE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D+ + + D AI+ P+QSS L+ R L A+P Y+K P + Sbjct: 123 LDIQFTDNDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYIKKFSSPATP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 QEL +HN I G + + W L +R I ++VNS + + + GIA Sbjct: 182 QELTQHNGILLGTTLSAPI----WALGKGNRKIMATFKRKVRVNSASMVKRLALDDYGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +L + K +LV I+++ F VY Y + + AF +F Sbjct: 238 MLSNTSCKQELATGSLVPILQEWPMEPFKVYGVYSSRRQLASNISAFLDF 287 >gi|206559709|ref|YP_002230473.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035750|emb|CAR51641.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 307 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 133/303 (43%), Gaps = 12/303 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++ F VA GS + AAE+L +S ++ SR ++ LE +G +L R R L LT+ G Sbjct: 4 WTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLNALEERLGARLVERTTRRLWLTDAGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + HR + ++L + E+SV P+G LR+ ++ + L EF YP++ + Sbjct: 64 EYHRRCVAILNELSEADAAVNEASVIPAGTLRVTASVSFASIYIAPALPEFHRRYPNLNV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q++ N+ D D AIR R+ S + RKL A+P YL P + Sbjct: 124 QIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPATPD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ + + F A + S L N I + G GI + Sbjct: 184 ALGDHRLLVYNLANDPYVLHFRHGAKKQSVTIK---SVLDANEGQVIRAAALAGLGILIQ 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK------AR 295 P YI+ D+ LV ++ D P+ TV Y K++ F F+ + AR Sbjct: 241 PLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLGLAR 300 Query: 296 DWK 298 WK Sbjct: 301 KWK 303 >gi|163798048|ref|ZP_02191987.1| Transcriptional regulator [alpha proteobacterium BAL199] gi|159176644|gb|EDP61218.1| Transcriptional regulator [alpha proteobacterium BAL199] Length = 313 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 145/287 (50%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V + S AA ++LS S +S+Q+S LE +G++L R R ++LTE GS + Sbjct: 7 MTIFVAVVENSSLAGAARHMNLSPSVVSKQLSALEDRLGVRLLNRTTRRVSLTEVGSAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + + P G L+I + +L F+ P++Q+Q++ Sbjct: 67 ERSKRILADVDEAEAAVSTAHSSPRGLLKITAPSTFAHRHVAPHLPGFMDRNPEVQVQML 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + D AIR+ + ++ SSLI RKL H AAP YL P +E+ Sbjct: 127 VADRLVDLVEEGVDLAIRIAQ-LKDSSLIARKLAPNHRKLVAAPDYLAKWGTPARPEEIT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H LI+ P + D++++ + + R + N SI+ + G+G+A+L + Sbjct: 186 DHALISLQPGSP--INDWHFVVDGEETVIRAR-GAIATNHGDSILALALSGAGLAMLAAH 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +V ++ L+ ++++ + +Y YP + K++AF +++ Sbjct: 243 VVGEHIKAGRLISVLDEHVREDVPIYAVYPSNRHLSPKVRAFVDYLV 289 >gi|28868763|ref|NP_791382.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852002|gb|AAO55077.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330872704|gb|EGH06853.1| LysR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964165|gb|EGH64425.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016390|gb|EGH96446.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 298 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 136/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA +L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMELYPQLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N +D+ + D AIRL + +Q S ++ +L M+ A+P YL+ P S+ Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYLERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELSRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLKEGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|134292298|ref|YP_001116034.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135455|gb|ABO56569.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 334 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 106/187 (56%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ + AAP YL EP SI++L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVSVAAPAYLDKYGEPRSIEDLA 185 Query: 188 KHNLITF 194 +H + + Sbjct: 186 EHKAVNY 192 >gi|221198994|ref|ZP_03572039.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221205254|ref|ZP_03578270.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221175045|gb|EEE07476.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221181445|gb|EEE13847.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 294 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A +P YLK P + Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRI-GALEDSTLIARALGAWKMIACVSPAYLKRHGAPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 EL H + +G W VD G PR +Q N+ + + G Sbjct: 180 PAELANHTCLLYGR-----ERRVGWEFRVD---GAPRTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP +IV D+ LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPSFIVGAALDSGALVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|293603416|ref|ZP_06685843.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292818189|gb|EFF77243.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 311 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 24/304 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ AA L + +S +SR+IS LE +G++L R R L LT G Sbjct: 3 DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTSAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+ +++ +P+G + ++ + + Q++L L EFL +P I Sbjct: 63 ERYLHYCREMAASARAADDAMRQLQSEPAGPVIVSCPVSIAQDVLAPLLPEFLDAWPAIS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL++ N+ +D+ + D A+R+R + + + L+ R L T A+P YL+ P + Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHLGTARGTLVASPGYLQRRGTPDT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235 Q+L H ++F D + W D+ GE P++SC N ++ + + Sbjct: 183 PQDLASHTTLSFSD----PQNEVRWPLRNDK--GEEVQIELKPQLSC---NDFIVLTEAA 233 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291 V G GIALLP ++ LV ++ +P V+ YP G + A R + F Sbjct: 234 VRGRGIALLPSIATQEQLRRGQLVPVLPQWQSPEGIVHCIYP---SRRGMMPAVRTLLDF 290 Query: 292 LKAR 295 L R Sbjct: 291 LSQR 294 >gi|218508253|ref|ZP_03506131.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Brasil 5] Length = 308 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 145/300 (48%), Gaps = 15/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 11 DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 70 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE L + L E+ KP G L+I+ + GQ + + +FL YP+IQ Sbjct: 71 RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIQ 130 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + N +D+ + D IR + ++ S+++ ++L + AAP YL++ P Sbjct: 131 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRALPTKP 189 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 ++L H + L+ + W R + R+S + + ++ + G GI Sbjct: 190 EDLKDHQCV----LLNGRNGEAEWHLISGRKSVDVRVSGSISSRDFDAVSAFTYRGHGIG 245 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298 LLP + L+R++ D +P V+ YP T + R +FL A + WK Sbjct: 246 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYP-----TRRFLPLRLQVFLDALKAWK 300 >gi|99078218|ref|YP_611476.1| LysR family transcriptional regulator [Ruegeria sp. TM1040] gi|99035356|gb|ABF62214.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040] Length = 305 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 17/290 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--H 67 V VA + F AA +L +S+S++S++I+ +E +G +LF+R R ++LTE G H Sbjct: 9 VVVAVAETQGFAAAARRLGVSKSAVSKRITQIENRLGAQLFHRSTRNVSLTEAGEHFYSH 68 Query: 68 RVTS-EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V + E + E + + LQE+ P G+LR+ + G+ + + FL YP + I + Sbjct: 69 AVRAQEAAQEAEDSVLALQEA---PKGRLRVNVPMAFGRLHVAPLISGFLARYPGVSIDM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D++ +D+ D D A+R + S+L+ RK+ + AAP YL P ++ +L Sbjct: 126 VMDDRMVDLFADGFDLALR-GGTLADSALVARKIAALRNVLVAAPTYLARHGAPQTVSDL 184 Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 HN + +F + + D + A RP G VN+ ++ + + G+GI L Sbjct: 185 RFHNCLQYSFSRDFQEWVFDCDGKAETFRPSG-----SYSVNNGEALREAVLGGTGIGRL 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P + + LVR++ PS T+Y YPE K++ F +++ Sbjct: 240 PTFTAGPDLASGRLVRVLPQCQLPSQTLYAIYPERRYLPTKVRVFIDYLL 289 >gi|209520738|ref|ZP_03269486.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209498827|gb|EDZ98934.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 354 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 13/287 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF A+ L LS + ++R ++ LE +G +L R R L+LTE G+ Sbjct: 6 SMRVFVKVADLGSFVGASGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGATY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE + + + +P G LRI + G + L ++ + YPD+ + Sbjct: 66 LERVRHILADLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T +M A P YL P+ ++L Sbjct: 126 TLADRHVDLVEEGFDVGILVARHMRSASIVTRRLTTGYMTVCATPDYLAQHGTPMRPEDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 +H+ ++ + E V P GE R+ + + N+ + Q+ +LG G+A Sbjct: 186 PRHSCLS------RPAEQGGGEERVFTGPDGEVRVRPTNAIAANNAEMLRQFALLGMGVA 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +LP Y++ + LVR+++ P + YP L K++ F Sbjct: 240 ILPSYLIGRDLAAGRLVRLLDGYSLPPIEITIAYPSRLHLPAKVRTF 286 >gi|157376372|ref|YP_001474972.1| transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318746|gb|ABV37844.1| transcriptional regulator [Shewanella sediminis HAW-EB3] Length = 302 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 137/262 (52%), Gaps = 13/262 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF+ V SGSF+ AA+ L+++ SS++R I LE + LF R R L LTE+G Sbjct: 3 DLIKVFHQVVESGSFSQAAQALNMAPSSVARNIDNLEALIQTTLFKRSTRQLILTEEGQY 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H ++++ + E++ ++ +P G LRI+ G L + EFL YP++QI+ Sbjct: 63 FHLQSAKLVQDADKLLSEMKGTNPEPEGVLRISVFESFGNIYLAPLIPEFLERYPNVQIE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDNK +D++ + D AIR+ P Q S L RKL+T + A+P Y+ ++ Sbjct: 123 IELDNKVVDLNSENIDLAIRIGTP-QDSRLKARKLLTNYTSLVASPDYIHTHPRIGKPED 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L +HN + LI + +W + R E ++S L ++ + GSG+ Sbjct: 182 LQQHNCL----LISHERQRNHWYFS--RGKVEKKVSVTGNLISKGGSPLLSAALQGSGVL 235 Query: 243 LLPDYIVKD---NPNLVRIMED 261 LL D++V N L+ I+ D Sbjct: 236 LLSDWMVTPYIANKQLIEILPD 257 >gi|77457351|ref|YP_346856.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381354|gb|ABA72867.1| putative LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA FT AAE+L +S S ISRQI LE + +L YR R +TLTE G Sbjct: 6 WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E + + + +P G LR+ + G+ + + F+ YP ++I Sbjct: 66 TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGHYPQLRI 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S L+ +L M+ A+P YL+ P S+ Sbjct: 126 DIELTNRQLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + D L R + + NS +++ + G G+ L Sbjct: 185 ELGRHNCLIGSS-------DIWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V ++ + LV ++E P+ V+ YP+ + K++ +F+ Sbjct: 238 PDYYVLEHLHSGALVSLLETHQPPNTAVWALYPQQRHLSPKVRKLVDFL 286 >gi|242001334|ref|XP_002435310.1| conserved hypothetical protein [Ixodes scapularis] gi|215498640|gb|EEC08134.1| conserved hypothetical protein [Ixodes scapularis] Length = 310 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 147/297 (49%), Gaps = 13/297 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F + G AAE L +S + +S+Q+ LE + L R R ++LTE G Sbjct: 4 FNVMRTFRRIVELGGLAKAAEDLGISAAGLSKQLRSLEAHLDTVLIQRTTRSMSLTETGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L+ + +++ S + +G LR+ + ++L + +FL YPD+++ Sbjct: 64 SYYAECCRLLDELDALERSVKQQSQRVAGTLRVNAPLSFALSVLSPLITDFLRKYPDLKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+++++ +D D ++RLR + S+LI R+L TI AAP YLK +P ++Q Sbjct: 124 ELVMEDRIVDAVAHGFDVSVRLRTSLDDSTLIARRLATIEQKLCAAPAYLKLHGQPQTLQ 183 Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCV 236 +L H +I++ + D + + + P P + L QVN+ L + + + Sbjct: 184 DLRHHQMISYSLAHTQGIVFDSDIDSAPNTP--APGSTALLFSGEHSQVNNSLMLRDFLI 241 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP ++ + L R++ + + +Y YP K+KAF +++ Sbjct: 242 AGLGIGALPSFLADPAIASGQLQRVLPEFVNEPRHIYAVYPTNRHLQPKVKAFVDYL 298 >gi|90410774|ref|ZP_01218789.1| putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90328405|gb|EAS44703.1| putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 292 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 141/288 (48%), Gaps = 11/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T A+ + + ++++R+I LE + ++L RHAR L+LTE G K Sbjct: 4 DDLNLFRMVVENGSYTGASRKTQVPVATLTRRIQALEECLNLRLLNRHARKLSLTEAGQK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L T + E +GKL+IA +L + LLQ L F+L +P I I+ Sbjct: 64 FYDDCAPLLQQLVDTTEHISEECKGAAGKLKIAAPSNLTKVLLQPMLNAFMLKHPAINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D D I R P + S+LI R++ + A+P YLKN EP Q Sbjct: 124 LHMSSE--PEQLDPTDWDIMFRVGPQRDSTLIARRISAVKDILVASPIYLKNNPEPKHAQ 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H L+ L+ + D N G + N + + C G GI L+ Sbjct: 182 DLHDHTLLKGNPLLRWRISDHNGDTVTINERGH-----FEANQLNVVRKACCAGLGITLM 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 PD +++ ++ LVRI+++ VY Y KL+ F F Sbjct: 237 PDVMLEQYIESGELVRILDNWSANPREVYILYNHRDYQPEKLRLFIEF 284 >gi|330975375|gb|EGH75441.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA +L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S L+ +L M+ A+P Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + N LV ++E P+ V YP+ + K++ +++ Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVGGLYPQQRHLSPKVRKLVDYL 286 >gi|91778887|ref|YP_554095.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691547|gb|ABE34745.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 296 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 144/289 (49%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + +FT AA +L LS+ +SR++ LE +G++L R+ R L +T+ G + Sbjct: 4 DDMRIFVATVDARNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDLGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + + P G LR++ + G L + FL + D++ + Sbjct: 64 FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMAHLSPLVAMFLREHGDVRFE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D AIR+ + S+LI +KLV I + A +P Y++ P + Sbjct: 124 MELSDRTVDVVGEGFDMAIRI-GALPDSTLIAQKLVDIRVVACCSPGYVRRRGAPAVPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L++H + +G +W VD G L+ N+ + V G GI L Sbjct: 183 LERHACLLYGH-----GGAVSWDFVVDGVTKGVDVHGPLRANNGELVRDAAVAGLGIVRL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+IV D + LV ++ED + +VY YP+ +++ ++AF F+ Sbjct: 238 PDFIVADALRSGQLVPVLEDFLPTVTSVYAVYPQHRQSSLTIRAFVEFL 286 >gi|254251654|ref|ZP_04944972.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa AUO158] gi|124894263|gb|EAY68143.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa AUO158] Length = 300 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 29/307 (9%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + V V +G+F A E L L+Q ++SR ++ LE +GI++F R AR + Sbjct: 1 MGFDSRLLSGIGVLSAVIEAGTFARAGEALGLTQPAVSRAVARLEERIGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ + K GKLR+ G +L + FL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKAKVRGKLRVNVDGTFGHYVLAPKMAAFLE 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +++ + ++ D+ D D A+R P + SS R L+ + A+P Y+ Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVN 226 EP EL D H + D P F W LA R L VN Sbjct: 180 GEPRHPHELADGHCCVLMRD--PATGRPFEWAFHRGGEVVPLAAAGR---------LMVN 228 Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 S++ CV G+G+A L + +D + L ++ + +F +Y Y + + K+ Sbjct: 229 DTGSLLGACVGGAGVAQLLELYARDTIADGRLKLLLPEWTDETFPLYAYYHASNLVSAKV 288 Query: 284 KAFRNFI 290 +AF +F+ Sbjct: 289 RAFLDFV 295 >gi|315499078|ref|YP_004087882.1| transcriptional regulator, lysr family [Asticcacaulis excentricus CB 48] gi|315417090|gb|ADU13731.1| transcriptional regulator, LysR family [Asticcacaulis excentricus CB 48] Length = 309 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 145/291 (49%), Gaps = 11/291 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D + VF V +G F AAE+L L++S++ + I+ LE+ +G++LF R R LT Sbjct: 1 MRDNLDGVAVFVEVVDAGGFARAAERLALTRSAVGKTIARLESRLGVRLFQRTTRTQNLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + +L+T + L+ + SG+L+I+ G++ +Q L +F +P Sbjct: 61 DEGHIFYERCVRAITELKTAEQMLESGRREVSGRLKISLPALFGRHCVQQVLLDFAAKHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ L +K +DI D D A+R K S+ L+ RKL++ A+P YLK P Sbjct: 121 SLELDLSFSDKVVDIIGDGYDLAVRNGKLGDSAGLMARKLLSQPKVVCASPAYLKAFGRP 180 Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 I L H + + G + P + D +TV + L+ +S SI VL Sbjct: 181 TDIPSLTGHEALLYIRNGQIFPWLLND-GMGSTVQAEVK----GRLRFDSQESITDAAVL 235 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G GIA LP ++VK +L+ ++E + Y +P+A +L+A Sbjct: 236 GFGIAWLPYWLVKTQIARGDLISLLEPFASTPIDTYAVWPKATHLPLRLRA 286 >gi|148261035|ref|YP_001235162.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402716|gb|ABQ31243.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5] Length = 310 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 142/291 (48%), Gaps = 10/291 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F GSF+ AAE S++SR ++ LE ++G+ LF+R R L LTE G + + Sbjct: 7 LRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTEPGEQFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + +P G LR+ G+ + + +FL LYP ++++L Sbjct: 67 AQVQAILRNLDEARDSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPGLRLELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ AD AIR+ P+ S+LI RKL A+P YL + ++L Sbjct: 127 FTDVRMDLLASGADLAIRI-GPLIDSTLIARKLAGHRRVVCASPSYLAGAPPLAAPRDLL 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN + + L P F P E P L+ + +++ + G GIALLP Sbjct: 186 RHNALIY-TLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIALLPV 244 Query: 247 YIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V ++ LVR++ D + T +Y YP + + K++AF +FI Sbjct: 245 WLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFI 295 >gi|39934632|ref|NP_946908.1| LysR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39648481|emb|CAE27003.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris CGA009] Length = 324 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DWD L+VF AR GS AA +L + QS+ISR+I+ LE+ +GI LF R GL +TE Sbjct: 6 SLDWDDLKVFLHAARGGSLGSAARRLKVDQSTISRKIAHLESTLGIALFERLPSGLRVTE 65 Query: 62 QGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G +L R+ S V E ++Q S + +G++R+AT + L Sbjct: 66 LGDRLLCHAERIESAVIAMRE----DVQCSGGRTAGRVRLATMEGIASLYLAAQFSRLHR 121 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P++ ++L+ + + ++ AD + +P + ++ ++ + YA+ Y+ Sbjct: 122 QHPNLIVELLTSPQAVSVNRREADLFLSFFQP-RGQGMVSERIGCFELGLYASEDYIARN 180 Query: 178 REPLSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P S +L +H IT+ DLI ++ WL D I P +S NS ++ M Sbjct: 181 GLPCSSADLKRHRFITYIDDLIQ--LDSVRWL---DDVIKTPVVS-FHSNSMIAQMNAAA 234 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LLP + K +L+ I+ D ++ S ++ L+ +++A +F+ Sbjct: 235 GGLGLVLLPSFATKGRCDLIPILHDRMSTSRELWINVHTDLQFVPRIRAVSSFL 288 >gi|110634997|ref|YP_675205.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285981|gb|ABG64040.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1] Length = 328 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 145/297 (48%), Gaps = 13/297 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VA SF AAE+L+L S+ISRQ+S LE +G++LF R R ++LTE G + Sbjct: 22 AFVSVAEHLSFAEAAEELNLKSSTISRQVSKLEDSLGVRLFSRTTRRVSLTEAGKLYLKE 81 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + L + + +P G LR++ + LG+ L + FL LYP++QI+ Sbjct: 82 CRSLLKNLTDMDAMVSSLNAEPRGCLRVSLPVALGRLYLNSTITAFLNLYPNLQIEADFS 141 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R + SS LI +K+ + A+P Y+ P + Q+L H Sbjct: 142 DRFVDIVGEGYDLVVRT-GTLPSSGLIAKKIASNKRVLVASPRYIAKHGVPATPQDLADH 200 Query: 190 NLITFGDLIPKCMEDFNW-LATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 N + F NW LA + R + E + + NS +I + V G GIAL+ Y Sbjct: 201 NCLRFSHY---ASSGSNWQLAKHEQREVVEVNGNFVS-NSSDAICEAAVGGLGIALIASY 256 Query: 248 IVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DWK 298 + D + LV ++ + P +Y YP T K+KAF +F+ + R DW Sbjct: 257 LAHDGIQSGGLVCLLPGWTSQPEAGIYVMYPSTRYLTPKVKAFTSFLEKRFRGVDWN 313 >gi|115358083|ref|YP_775221.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115283371|gb|ABI88887.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 307 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 12/298 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +L++F + A GS + AAEQL +S ++ SR +S LE +G +L R R + LT+ G Sbjct: 4 WTQLQLFVLTADLGSLSKAAEQLDMSNAAASRTLSSLEERLGARLIERTTRRMWLTDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + HR + V +L E V P G LR+ +++ L L EFL YP++ + Sbjct: 64 EYHRRCTAVIAELAEADAIASEEVVNPRGVLRVTSSVSFAMMHLAPALPEFLKRYPNLTV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ N+ + D AIR ++ S + R+L A+P YL P + Sbjct: 124 QITATNQYQNFIESGIDIAIRTKEHEGDSCITIRRLAETRRVLAASPAYLATHGRPQKPE 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L +HN++ + + +L + R E I S L N I+ G GI Sbjct: 184 DLAQHNMLVYNLAVDP------YLLHLRRGKEERNIAIASALDSNEGQVIVAAGRAGLGI 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + P YI+ D+ LV ++ED P T+ Y K++ F +F+ + ++ Sbjct: 238 VVQPLYIIHDDIVSGRLVPVLEDWQLPRLTINLAYQSRRYQPAKIRVFTDFLIERVKN 295 >gi|149911731|ref|ZP_01900338.1| Transcriptional regulator [Moritella sp. PE36] gi|149805204|gb|EDM65222.1| Transcriptional regulator [Moritella sp. PE36] Length = 302 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 148/299 (49%), Gaps = 7/299 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+ + VF V GSF+ AAE+L +++S++S++IS LE +G++LF R R + LT Sbjct: 1 MKDDFSAIPVFVAVVERGSFSSAAEKLGMTKSAVSKRISVLEDNLGVRLFNRTTRSIALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + L P G L+I + + + +KEFL YP Sbjct: 61 EAGERFSDYARNAFVIANEGFAALHNLQGIPKGTLKINAPMTFTRLHIVPYIKEFLDSYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+++ L +D++ + + D IR+ + +++SSLI +KL A+P YL+ P Sbjct: 121 DVRVILSMDDRIVSLVEGGYDVGIRIGE-LENSSLIAKKLADCKSVLCASPEYLEKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++L HN I + + + ++ + + EP+ + + VN+ +I++ + G G Sbjct: 180 SKPEDLSHHNCINYS--LFQGGAEWTFYKDSKKIKLEPKGNFI-VNNSDAILEVLLNGLG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 I +P +IV + + L+ M++ P +Y YPE K++ F FI K D Sbjct: 237 ICQMPTFIVAEHLKSQRLMTFMDEYALPKHAIYAVYPERKHLPEKVRVFIEFISHKLGD 295 >gi|262194584|ref|YP_003265793.1| LysR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077931|gb|ACY13900.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM 14365] Length = 296 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 141/302 (46%), Gaps = 40/302 (13%) Query: 6 DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L Y AR +GSF+ AA + S++++S+ ++ LE +G+ L R+ R LTLTE Sbjct: 2 DRLTAMYAFARVVDAGSFSAAARRWGRSKAAVSKYVADLEAHLGVTLLRRNTRSLTLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + E+ + ++ + L+E G LR+ L +F+ +P + Sbjct: 62 GAAYYPRCIEILNAVDAAETGLREQQSALRGTLRVTAPPGFASRYLAVLTSDFVARHPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L L ++ ID+ + D A+R+ +P Q SSLI R+L A AAP YL +P + Sbjct: 122 RIDLDLTHRMIDLVEEAVDVAVRMTEP-QDSSLIARRLAPAPCIAVAAPRYLAARGQPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---------------LATVDRPIGEPRISCLQVNS 227 +EL H+ C+ D N+ TVD P +VNS Sbjct: 181 PRELRAHD----------CLVDTNFRDQQRWRFRVGGRTQRVTVDGP--------FRVNS 222 Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 L++ + G GIA++P I + LV ++ + +++Y YP +++ Sbjct: 223 PLAVRDLAIAGHGIAIVPALIAEAAIATGELVEVLPGTVALRWSIYAAYPRREHLPERVR 282 Query: 285 AF 286 A+ Sbjct: 283 AY 284 >gi|261365131|ref|ZP_05978014.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC 25996] gi|288566565|gb|EFC88125.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC 25996] Length = 298 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SGSFT AAEQL +S + S+ +S LE + KL +R++R L LTE G + + Sbjct: 7 LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENSIKAKLLHRNSRNLHLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+T + + P G LR+ + NL+ L E+ YP++ + L+ Sbjct: 67 RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLIGTWLAEYRERYPEVTLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D A+R+ K + S SLI + L I A+P YL +P + +E+ Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIVKPLAQIQFVLLASPEYLAKHGKPQTPEEVM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLGSGIAL 243 +H I +P + N L R GE I L Q ++ L I + G+GIA Sbjct: 186 RHPAI-----LPTYTDQRN-LEITHRETGEKSILTLNPVIQSDNTLMIRELVRAGAGIAY 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + + + LV ++ + + + Y + + K+++F +F+ Sbjct: 240 QPLWSARQDLKEGRLVSLLPEYRVRTEQLNAVYVDRAFLSAKVRSFIDFL 289 >gi|327191086|gb|EGE58138.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 308 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 145/300 (48%), Gaps = 15/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 11 DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 70 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE L + L E+ KP G L+I+ + GQ + + +FL YP+IQ Sbjct: 71 RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIQ 130 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + N +D+ + D IR + ++ S+++ ++L + AAP YL++ P Sbjct: 131 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRALPTKP 189 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 ++L H + L+ + W R + R+S + + ++ + G GI Sbjct: 190 EDLKDHRCV----LLNGRNGEAEWHLISGRKSVDVRVSGSISSRDFDAVSAFTYRGHGIG 245 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298 LLP + L+R++ D +P V+ YP T + R +FL A + WK Sbjct: 246 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYP-----TRRFLPLRLQVFLDALKAWK 300 >gi|82775594|ref|YP_401941.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae Sd197] gi|309787118|ref|ZP_07681730.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella dysenteriae 1617] gi|81239742|gb|ABB60452.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae Sd197] gi|308924696|gb|EFP70191.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella dysenteriae 1617] Length = 304 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P+Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPNYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMINREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|115359484|ref|YP_776622.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284772|gb|ABI90288.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 306 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A GS++ AA L ++ S++S+ I LE +KLF R R LTLT++G +LH Sbjct: 12 LIAFSRAASLGSYSAAARALGVTPSAVSKSIQRLEQHFELKLFNRTTRSLTLTQEGRELH 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + ++E + + +P+G L++ + +G +L+ L F +P + I L Sbjct: 72 ERTLRLLAEMEAIEQAAVSARSEPAGTLKVTAPLPIGIHLIAPALPAFRKRFPKLSIDLR 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D AIR+ + S LI R+L H+ AYA+P YL P +L Sbjct: 132 LGDHFVDLVGEGVDVAIRVGD-LTGSRLISRQLSPHHIGAYASPDYLARRGVPKHPDDLV 190 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F + F W T D + + + V++ ++ V G G+ + P Sbjct: 191 DHDCVNF--RFQSSGQVFRWNFVTGDGSLDLIPDAGIVVDTSDAVAAVMVAGGGVGITPA 248 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y+ LV+++ + + P T+ +PE+ +++ +KAF Sbjct: 249 YVADSYVKRGELVQVLTEFVEPRSTITALWPESRRSSPNVKAF 291 >gi|126738231|ref|ZP_01753952.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] gi|126720728|gb|EBA17433.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] Length = 313 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 10/283 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++ F VA+SGS T AAEQL SQ ++ R I LE ++G +LF RHARGL+L+E G Sbjct: 8 DWSLIQSFLAVAQSGSLTGAAEQLGRSQPTLGRHIRALEQDLGQRLFDRHARGLSLSETG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + ++++ ++ S + G +R+ ++ +LL + E P I+ Sbjct: 68 VSLLPMAEAMKEQMQSFSLQAAGLSNQLEGTVRLTASVFASHHLLPEIIAEIRRREPLIE 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+ + ++ AD A+R+ +P Q ++ R + + + +AA YL P Sbjct: 128 VELVPTDSSENLLFREADIALRMYRPTQ-LDVVTRHVADLRLGIFAAKSYLDRRGRPKLP 186 Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL H L+ + DLI M+D W A + C +Y +++ LG GI Sbjct: 187 EELWSHELVGYDRNDLILHTMQDMGWPAKRS----HFKTRCDNQATYWQLVR---LGCGI 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 I + +P + ++ ++ P V+ ++ T +++ Sbjct: 240 GFCQSGIARADPLVEELLPEISIPPLPVWLTAHAVMRQTPRIR 282 >gi|209884027|ref|YP_002287884.1| transcriptional regulator of LysR family [Oligotropha carboxidovorans OM5] gi|209872223|gb|ACI92019.1| transcriptional regulator of LysR family [Oligotropha carboxidovorans OM5] Length = 305 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 144/288 (50%), Gaps = 14/288 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD R+F VA++GS + AA L ++ S++ R+++G E +G++LF R G LT G Sbjct: 7 NWDDYRLFLAVAQAGSLSGAARLLGVTHSTVFRRLTGFEKTLGVRLFERLPSGYVLTAAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + T+ + ++ + + + SG++RI T L +LL +L F + +P I+ Sbjct: 67 EAMQHATARIDDEIAAVRRRVTGQDQRLSGQVRITATDMLAISLLPPHLAAFRVAWPGIE 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++ + +D++ AD A+RL P+Q +L+ R++ + Y A Y RE + Sbjct: 127 LELLVSDTRLDLTRREADIALRLGNPVQ-ETLVGRRIGRLAFAVYCAAAY---HREGIG- 181 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H+ I FG P WL + RP + NS + + +G G+A Sbjct: 182 EDLASHDWIGFGSAHAPLRQVLAEWLPGL-RP-------QFRTNSITAAIAAARVGIGLA 233 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP I + L R+ ++ E L++T +++AF +F+ Sbjct: 234 ALPCAIADPDSGLRRVAPFPGDFRLDLWLLTHEDLRHTARIRAFVDFM 281 >gi|254472253|ref|ZP_05085653.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211958536|gb|EEA93736.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 309 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 23/300 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V GSF A +L++ ++ +S Q++ LE +G+++ +R R L+LT G +L Sbjct: 10 RLAVFACVVEQGSFAAAGRKLNMGRAKVSEQVALLEEALGVRVLHRSTRKLSLTTDGERL 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +++ + + SG LR+ T D Q +L LK F+ YP ++++L Sbjct: 70 LPHAQGLLQLSQDALASVEQGAEELSGTLRVTCTQDFMQRVLSRFLKGFVRRYPALKLEL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D++ +D+ D D A+R+ P S++I R L + YA+ YL P + +L Sbjct: 130 LVDDQKLDLIEDEVDVALRIGIP-ADSAMIGRVLCDVEFQLYASCDYLSEHGRPALVSDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H I D+ N L+ D RPI + + NS I+ +GSGI Sbjct: 189 KNHRGIDTLDVA------LNSLSLSDQTGLRRPISLH--AMCRTNSPSGILSMVEIGSGI 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297 LLP Y+V+D + R++ D S +Y YP + K A R+ +F+ R W Sbjct: 241 GLLPLYLVRDAVERGTVERVLPDWSFGSAKLYLLYP-----SKKQLARRSRVFMDEFRKW 295 >gi|213969141|ref|ZP_03397280.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|301383964|ref|ZP_07232382.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302064150|ref|ZP_07255691.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] gi|302134077|ref|ZP_07260067.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926139|gb|EEB59695.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 298 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 136/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA +L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMELYPQLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N +D+ + D AIRL + +Q S ++ +L M+ A+P YL+ P S+ Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRKMYLCASPSYLERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELSRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + LV ++E P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQKHLKEGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|255592214|ref|XP_002535661.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] gi|223522375|gb|EEF26724.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] Length = 298 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 9/292 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D L F V +GSF++AAE+L + S +SR IS LE ++G+ L +R R L LTE+ Sbjct: 2 LDVGALIAFVAVIDTGSFSNAAERLGQTPSGVSRTISRLEQQLGMTLIHRTTRRLDLTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS L + LE T+ E + +P+G +R+ +L+ L +FL YP + Sbjct: 62 GSWLLARARRILADLEETESEAALARARPAGLVRVNAATPTLDHLIAPQLADFLDAYPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q++L +D+ + AD AIR+ + S+L R+L + AAP YL+ P Sbjct: 122 QVELTSGETVVDLIEEKADVAIRIGN-LSDSTLNARRLGRSRIRVLAAPGYLERHGTPQQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +L KH L+ F + P + W G + + S +I + G+GI Sbjct: 181 VDDLAKHRLVGF--VAPTSLN--TWPLRAGGEEGWRAVPHVTATSGETIRHLALQGAGIV 236 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 L D++ + + LV ++ED P + V+ + + ++KA +F+ Sbjct: 237 SLSDFLTRADIAAGRLVPVLEDASLPWTQPVWAVFYKQGALAPRVKALVDFL 288 >gi|110635382|ref|YP_675590.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286366|gb|ABG64425.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1] Length = 311 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 147/300 (49%), Gaps = 29/300 (9%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ ++VF V +GSF+ AA L ++ S++S+ IS +E +G++L R R L+LT +G Sbjct: 6 WE-MQVFLRVVETGSFSEAARLLRMTPSTVSKLISRVEARLGVRLVERSTRRLSLTTEGQ 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H + + +L+ + EL + G +R+ ++ G L+ L EF YP+I + Sbjct: 65 IYHERSRALLQELDLLERELSYGAAATDGTVRVNASVAFGVLGLEPLLPEFWRAYPNIVV 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ +D D A R+ P+ S ++ R++ A+P YL C P ++ Sbjct: 125 DLSLSDEIVDLYLDRTDIAFRV-GPLPDSGMMARRIGVARRKIVASPSYLGRCGTPRKVE 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA----------TVDRPIGEPRISCLQVNSYLSIMQY 234 +L +HN + F +F A TVDR + L N+ ++ + Sbjct: 184 DLSRHNCLGF---------NFRRAAPVWPLKESGRTVDRVVN----GSLLANNGETVRRM 230 Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G+A + DY V+ + LV ++ D + + V+ + L+ +++ F +F+ Sbjct: 231 ALAGVGLARMGDYHVRADLAAGRLVEVLTDAVESDEEEVHAVFLGGLRMPQRVRVFLDFV 290 >gi|307153965|ref|YP_003889349.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984193|gb|ADN16074.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7822] Length = 304 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 15/304 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ ++ F V ++G F AA +++LS+S +++ + LE E+G++L R R +T T G Sbjct: 4 FESIKAFTQVIKAGGFAAAAREMNLSRSMVNKLVINLENELGVQLLQRTTRQVTPTATGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE ++ + + +P G L+I + G L + +F+L YPD+Q+ Sbjct: 64 AFYERCLSILAELEEAELAVSQLQREPKGILKINAPMSFGTLHLAPAIADFMLQYPDLQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL L+++ ID + D +R+ KP Q++ LI LV + AAP Y P + Sbjct: 124 QLTLEDRFIDPIAEGFDVTVRICKPFQAAGLIVHPLVGVKQVLCAAPSYFDKRGIPKHPK 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241 EL +H+ + +G L W + P GE ++ L N+ ++ + G GI Sbjct: 184 ELGEHSCLHYGYL----AAGNQW--KLFGPKGECTVNINGVLCSNNGEALCSAALKGLGI 237 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKAR 295 LLP +I+ D +LV+++ D VY YP + K++ F F +F + Sbjct: 238 VLLPTFIIGDELKTGSLVQVLPDYFGLELFVYVIYPTNRHLSIKIQLFTEFVKGVFGEQS 297 Query: 296 DWKF 299 W F Sbjct: 298 CWGF 301 >gi|254708832|ref|ZP_05170643.1| Transcriptional regulatory protein, LYSR family [Brucella pinnipedialis B2/94] gi|256030358|ref|ZP_05443972.1| Transcriptional regulatory protein, LYSR family [Brucella pinnipedialis M292/94/1] Length = 308 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 27/299 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193 Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 S ++L++H L + DL+ P+ D+ +V+S L + Sbjct: 194 SPEDLNRHRLTGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 239 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 240 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296 >gi|323963761|gb|EGB59263.1| LysR substrate binding domain-containing protein [Escherichia coli M863] gi|327254927|gb|EGE66537.1| hypothetical protein ECSTEC7V_0219 [Escherichia coli STEC_7v] Length = 304 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + S L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVQYS-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|255065372|ref|ZP_05317227.1| transcriptional regulator, LysR family [Neisseria sicca ATCC 29256] gi|255050197|gb|EET45661.1| transcriptional regulator, LysR family [Neisseria sicca ATCC 29256] Length = 298 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SGSFT AAEQL +S + S+ +S LE + KL +R++R L LTE G + + Sbjct: 7 LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENTIKAKLLHRNSRNLHLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+T + + P G LR+ + NL+ L E+ YP++ + L+ Sbjct: 67 RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLIGTWLAEYRERYPEVTLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D A+R+ K + S SLI + L I A+P YL +P + +E+ Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIVKPLAQIQFVLLASPEYLAKHGKPQTPEEVM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLGSGIAL 243 +H I +P + N L R GE I L Q ++ L I + G+GIA Sbjct: 186 RHPAI-----LPTYTDQRN-LEITHRETGEKSILTLNPVIQSDNTLMIRELVRAGAGIAY 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + + + LV ++ + + + Y + + K+++F +F+ Sbjct: 240 QPLWSARQDLKEGRLVSLLPEYRVRTEQLNAVYVDRAFLSAKVRSFIDFL 289 >gi|192290148|ref|YP_001990753.1| LysR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192283897|gb|ACF00278.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 16/294 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DWD L+VF AR GS AA +L + QS+ISR+I+ LE+ +GI LF R GL +TE Sbjct: 6 SLDWDDLKVFLHAARGGSLGSAARRLKVDQSTISRKIAHLESTLGIALFERLPSGLRVTE 65 Query: 62 QGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G +L R+ S V E ++Q S + +G++R+AT + L Sbjct: 66 LGDRLLCHAERIESAVIAMRE----DVQCSGGRTAGRVRLATMEGIASLYLAAQFSRLHR 121 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P++ ++L+ + + ++ AD + +P + ++ ++ + YA+ Y+ Sbjct: 122 QHPNLIVELLTSPQAVSVNRREADLFLSFFQP-RGQGMVSERIGCFELGLYASEDYIAQN 180 Query: 178 REPLSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P S +L +H IT+ DLI ++ WL D I P +S NS ++ M Sbjct: 181 GLPCSSADLKRHRFITYIDDLIQ--LDSVRWL---DDVIKTPVVS-FHSNSMIAQMNAAA 234 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LLP + K +L+ ++ D ++ S ++ L+ +++A +F+ Sbjct: 235 GGLGLVLLPSFATKGRCDLIPVLHDRMSTSRELWINVHTDLQFVPRIRAVSSFL 288 >gi|108760643|ref|YP_634909.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108464523|gb|ABF89708.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622] Length = 305 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/282 (26%), Positives = 140/282 (49%), Gaps = 11/282 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F +GSF AAE++ LS+S++ + I+ LE + +LF R R LTE G + Sbjct: 10 AFVQAVEAGSFALAAERMGLSRSAVGKSIARLEERLETRLFQRTTRRQGLTEDGQAFYER 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +LE + L P+G+LR++ + G++ L+E +L +P +++++ Sbjct: 70 CVRALAELEAAETALDSGRRAPTGRLRVSAPVMFGRHCAAPLLRELVLQHPGLELEIAFS 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ + L R+L M AAP YLK P ++++L +H Sbjct: 130 DRMVDLVEEGYDLALRVAPLADHAGLTARRLGVQTMSVCAAPGYLKRHGRPKTLEDLGEH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246 + + +G + + W D GE RI+ L+ + +IM V G+G+A LP Sbjct: 190 DAVVYG----RNGVNKPWRFP-DGQGGEQRIAVQARLRFDDVETIMDAAVQGAGLAWLPR 244 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 +++ + + LV ++E +Y +P++ T K++A Sbjct: 245 WLIAEHLSSGRLVEVLETQRPYGNEIYAVWPQSKHLTSKVRA 286 >gi|315182743|gb|ADT89656.1| transcriptional regulator [Vibrio furnissii NCTC 11218] Length = 300 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 25/304 (8%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V GSF AAE+L +S S+ IS LE ++G++L R R L TE G + Sbjct: 8 RMFVAVMELGSFAKAAERLAISSGQASKLISRLEQDLGVQLVKRSTRSLAATEVGQAYYE 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V L+ ++ +S PSG+LRI+ + GQ+ L +L +F +PDI + + Sbjct: 68 RIKRVLDDLDALDDAIRNASRLPSGRLRISAPVTFGQSQLAPSLIDFSKQFPDITLDVKF 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +++ + D A+R+ K + SSLI RKL + + A+PHYL P I++L + Sbjct: 128 SDRSVNVVDEGFDLALRIGK-LDDSSLIARKLCDVRVITLASPHYLSQHGTPTHIRDLAQ 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSI------MQYCVLGSG 240 H+ C+ D N+ P + + VN L ++ G G Sbjct: 187 HH----------CIIDTNFRDPYHWPYLNEQGHVHDFAVNGRLKFSNAEVCLKAACAGLG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 I LP ++ L+ I++ P +Y YP A +AF +F+ F Sbjct: 237 ITRLPTFVAAQALKEQQLIAILQQYEVPPLGLYALYPPAKHLARSSRAFIDFLVNRFANG 296 Query: 295 RDWK 298 DW+ Sbjct: 297 ADWE 300 >gi|238750486|ref|ZP_04611987.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia rohdei ATCC 43380] gi|238711417|gb|EEQ03634.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia rohdei ATCC 43380] Length = 300 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V GSF+ AAEQL + S +SR + LE+++G+ L R R ++LT Sbjct: 1 MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRAVKKLESKLGVTLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R + + + EL +S + P G LRI + + +++ + EF YP Sbjct: 61 QEGEHYFRRVQNILRDMAAAENELLDSQLNPKGLLRIDASTPVLLHIIAPLMVEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ I++ D AIR+ +Q S+L RKL+T + H A+P YLK P Sbjct: 121 LVALSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHILASPAYLKQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L H + F DL P W LA D + E S L N+ + + C+ G+ Sbjct: 180 QTVADLQHHICLGFNDL-PVLNR---WPLAGSDGQLYEI-TSDLTSNNGETQRRLCLEGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++++ + +L+ ++E+ V P VY+ +A+ N +L+ F +FI Sbjct: 235 GIACLSDFMIQQDLQRGDLIPLLEEHILPVAMPINAVYYS-DQAISN--RLRCFIDFI 289 >gi|86156977|ref|YP_463762.1| LysR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773488|gb|ABC80325.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 322 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 130/286 (45%), Gaps = 7/286 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+VF VA +G F A +L LS +++R ++ LE VG +LF R R + TE G + Sbjct: 6 QLQVFVAVADAGGFARAGARLRLSPPAVTRAVAALEARVGARLFNRTTRTVRPTEAGLRF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V LET + E PSG L + ++ G+ L ++ FL P + L Sbjct: 66 LEPARRVLADLETAEREAAGEGAAPSGHLTLTASVTFGRWALAPVVRAFLRAQPGVGATL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D A+R+ + + S L+ RK+ I A+P YL+ P S L Sbjct: 126 VLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPASPARL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F L P F A R + P L VN L+ + G G+ L Sbjct: 185 REHAAIAFTGLQPGREWRF---ADGGRQVAVPVAPRLVVNDALAALDAAEAGDGLTLALS 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+V + LV ++ P V +P A K++AF +F Sbjct: 242 YMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287 >gi|83944006|ref|ZP_00956463.1| Putative transcriptional regulator, LysR family protein [Sulfitobacter sp. EE-36] gi|83845253|gb|EAP83133.1| Putative transcriptional regulator, LysR family protein [Sulfitobacter sp. EE-36] Length = 289 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 17/279 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 W+ + F VA + SFT AA L +S + +SRQ+ LE + KLFYR R +T+TE Sbjct: 2 LSWEGVSEFVAVAEAQSFTAAANSLGISTAQVSRQVGALEARLDTKLFYRTTRKVTITET 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +V L + + + P G+L + + G+N + + +F+ YPD+ Sbjct: 62 GQVYYNHCRQVLDGLAEAERAITDLHQSPKGRLNLTAPVTYGENRIAPLVNDFVRRYPDL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L N+ +D+ + D AIRL + ++ SS++ ++L + + AAP YL P + Sbjct: 122 EVNLRLTNQLLDLVAESYDLAIRLGE-LEDSSMMAKRLASRRHYTCAAPEYLSAHGTPHT 180 Query: 183 IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + ELD +N + T G W R+ L+ NS S++ + Sbjct: 181 LSELDGYNCLQGTLG----------YWRFQEKGTTRHIRVKGNLRCNSGASLVDAALKNL 230 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 GI LPDY V+ LV +++ P ++ YP+ Sbjct: 231 GIIQLPDYYVEAELRAGRLVSVLDTYRAPDDGIWAIYPQ 269 >gi|283834507|ref|ZP_06354248.1| contact-regulated protein A [Citrobacter youngae ATCC 29220] gi|291070057|gb|EFE08166.1| contact-regulated protein A [Citrobacter youngae ATCC 29220] Length = 304 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + E+ ES P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ +P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 ++++L +H + F + P + W +A D + E + C + NS ++ Q C+ G Sbjct: 180 ETVEQLKQHLCLGFSE--PVSLN--TWPIACRDGQLHE--VECGISSNSGETLKQLCLSG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV ++ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|254250388|ref|ZP_04943707.1| hypothetical protein BCPG_05280 [Burkholderia cenocepacia PC184] gi|124879522|gb|EAY66878.1| hypothetical protein BCPG_05280 [Burkholderia cenocepacia PC184] Length = 308 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 142/293 (48%), Gaps = 10/293 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 3 NMEINDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + ++ + + S + G L+I+ + G + + EFL +P Sbjct: 63 SGQEFYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P Sbjct: 123 VRLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQ 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240 + +L H + +G W VD + + L N+ + + G G Sbjct: 182 TPADLAGHTCVLYGR-----ERRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP +IV D+ LV +++ + P T+ +P+ + L+ F F+ Sbjct: 237 IALLPHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFL 289 >gi|157371532|ref|YP_001479521.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323296|gb|ABV42393.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 291 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 8/257 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F VAR G+ AA +LH+ Q+++ R+I+ E +G KLF R + +L+ Sbjct: 2 MNWDDARFFLAVARCGTLRKAANELHVDQATVGRRITAFEESLGSKLFIRTPKSFSLSPL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + + ++ + G +RIATT + + + LK +P I Sbjct: 62 GEEMLADVMNMENAVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALKALREQHPLI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++ DIS AD AIR +P +S LI +++ TI M YA YL P Sbjct: 122 TVTMLTAVNISDISYRGADLAIRGARP-ESDELIIKRMATIEMGLYATQDYLDKHGLPTK 180 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H+L+ F +L+P+ DF A +D P + LQ NS L + G GI Sbjct: 181 GDHLSGHDLLMFPRELVPRHWNDFCGEALID-----PNV-VLQCNSQLLLRSATRNGLGI 234 Query: 242 ALLPDYIVKDNPNLVRI 258 LL ++ +P+LVRI Sbjct: 235 GLLSSFLADKDPDLVRI 251 >gi|299770642|ref|YP_003732668.1| LysR substrate binding domain protein [Acinetobacter sp. DR1] gi|298700730|gb|ADI91295.1| LysR substrate binding domain protein [Acinetobacter sp. DR1] Length = 303 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 146/280 (52%), Gaps = 11/280 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V +GSF AAEQLHL++S+IS+ I+ LE ++G+ LF R R L++T Sbjct: 1 MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRTLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + + +++ L + + +G+LR++ + GQ + +F + Sbjct: 61 DEGTLFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+++ +++ +D+ + D IR+ ++ L+ + + M A+P YL Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGTLPDTTQLVAKPIGEHRMLLCASPDYLNEAGLL 180 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +I++LD H I FG + ++ N P+ + L +N +I + Sbjct: 181 ENIEDLDHHVTIADPHFGQIKKWQLQQEN-----SEPLFFKPKTKLLLNDLQAIKNAALA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G+GIA LPD+++++ + LV+++E + + +F ++ +P Sbjct: 236 GAGIAWLPDWLIQNELQDGKLVQVLETMSSIAFPIHLVWP 275 >gi|114047687|ref|YP_738237.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113889129|gb|ABI43180.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 293 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 147/292 (50%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA + +FT AA++L++S + +SRQI LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ +P ++ Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYMAASPSYVEKYGQPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + + +E+ R L NS ++ + G GI L Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 PDY ++++ L+ ++ ++ YP+ + K++ +++ K Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEK 287 >gi|187732313|ref|YP_001879005.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94] gi|187429305|gb|ACD08579.1| transcriptional regulator, LysR family [Shigella boydii CDC 3083-94] Length = 304 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EITLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|207721361|ref|YP_002251802.1| transcriptional regulator protein [Ralstonia solanacearum MolK2] gi|207723605|ref|YP_002254003.1| transcriptional regulator protein [Ralstonia solanacearum MolK2] gi|206586520|emb|CAQ17107.1| transcriptional regulator protein [Ralstonia solanacearum MolK2] gi|206588807|emb|CAQ35769.1| transcriptional regulator protein [Ralstonia solanacearum MolK2] Length = 294 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 6/257 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F VAR+ + AA++L + Q+++ R+I+ LE E+ KLF R + L LT Sbjct: 1 MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + H T + + + + +G +R+ATT L + + + L +P I Sbjct: 61 GEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + +++ AD A+R +P + LI R++ TI YA+ YL+ EP+ Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+L+ L P+ + W A P+ R+ LQ +S ++I + + G GI+ Sbjct: 180 GSAFAGHDLV----LYPRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGIS 234 Query: 243 LLPDYIVKDNPNLVRIM 259 L +P LVR++ Sbjct: 235 ELVCCRADPHPELVRVL 251 >gi|86358297|ref|YP_470189.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282399|gb|ABC91462.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 300 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 14/295 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 3 DLNDIAVFAKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE L + L E+ KP G L+I+ + GQ + + FL YPDIQ Sbjct: 63 RAYYDRCSEPLSHLLDAEQALGETQRKPGGLLKISVPVIFGQEVFYEFISAFLKTYPDIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L + N +D+ + D IR ++ SS+I ++L + AAP YLK P Sbjct: 123 VDLFVTNLFLDLVAENIDVGIRFGD-LKDSSMIAQRLGKSVRYLVAAPEYLKGRAIPAKP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 ++L +H + L+ + W R + R+S + + ++ + G GI Sbjct: 182 EDLTEHRCV----LLNGRNGEAEWHLVSGRKSLDLRVSGPVSSRDFDAVSAFTYRGHGIG 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 LLP + L+R++ + +P V+ YP T + R +FL+A Sbjct: 238 LLPSTYCDEQIRRGELIRLLPEWSSPEIFVHAVYP-----TRRFLPLRLQVFLEA 287 >gi|17549331|ref|NP_522671.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431583|emb|CAD18261.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 315 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 147/292 (50%), Gaps = 13/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA+ L L +++++ + LE +G++L +R R + +T G+ + Sbjct: 7 MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE T+ +S+ G LRI +G+ LL +++F YP +Q+++ Sbjct: 67 ERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPGLQLEIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DCA+R+ + +Q S+L+ R++ + M A+P YL+ P S+++L Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLERYGTPRSLEDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI-- 241 H + + P+ +W +D G+ +I S + VN S M + G G+ Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240 Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 A L Y + LV ++ D I+ V YP + K++ F +++ + Sbjct: 241 TARLLAYEHLQSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWVAM 292 >gi|91778169|ref|YP_553377.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690829|gb|ABE34027.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 297 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 140/292 (47%), Gaps = 14/292 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D+L +F VVAR SFT AA +L +SQ ++SR + LE +GI+L R R ++ TE G Sbjct: 6 YDQLAIFAVVARERSFTRAAARLGMSQPALSRAMRQLEERLGIRLLARTTRSVSATEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L RV + + +++T L + KP+G+LRI +LQ L + L +PDI++ Sbjct: 66 HLLRVVAPRFEEIDTELALLSQFRDKPAGRLRITAGEHPAVTILQPALAKILPDHPDIRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++I+D DI + D +RL + I + R + M +P Y P + + Sbjct: 126 EVIVDYGLTDIVAEGYDAGVRLGEQIAKDMIAVRIGPEVRMAVVGSPDYFARHPRPRTPR 185 Query: 185 ELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +HN I T+G + P E V R G+ L N+ + + G Sbjct: 186 DLIRHNCIAIRLPTYGGIFPWEFEKKGEELKV-RVEGQ-----LVFNNIAMRLDAALRGL 239 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 G+ +P+ +VK + LVR++ D P + YP +++ R+ Sbjct: 240 GLTYMPEDLVKAHVREGVLVRVLSDWCPPIPGYHLYYPSRRQSSPAFTVLRD 291 >gi|325168909|ref|YP_004280699.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064632|gb|ADY68321.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 305 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 7/247 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V G F+ AA + ++ S++S+ I+ LE +G +L R R LT +G Sbjct: 11 EMEVFVQVVERGGFSSAARSVGMTPSAVSKLIARLEARLGTRLINRSTRVFKLTSEGCVF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +E + + + PSG+LR++T+ ++L G L EFL YP+I + + Sbjct: 71 FERATRILADIEDAE-RIASAGEVPSGRLRLSTSASYATHVLAGILPEFLERYPEITVDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + +D+ + D A+R P++SSSLI R+L M AAP Y+ P +I+EL Sbjct: 130 VQSDLVVDLLEERMDVAVRA-GPLKSSSLIARRLGDTAMTIVAAPCYVDRRGLPRTIEEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 ++H+ + G + M+ W L + I P + +Q N ++ Q + G+GIA L Sbjct: 189 ERHDRLGLG--YTRSMD--GWPLISAGATIFAPVAARVQANDGEALRQLVLAGNGIARLA 244 Query: 246 DYIVKDN 252 ++ ++D+ Sbjct: 245 NFTIRDD 251 >gi|300694133|ref|YP_003750106.1| transcription regulator protein, lysr family [Ralstonia solanacearum PSI07] gi|299076170|emb|CBJ35483.1| putative transcription regulator protein, LysR family [Ralstonia solanacearum PSI07] Length = 314 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 146/290 (50%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA+ L L +++++ + LE +G++L +R R + +T G+ + Sbjct: 7 MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE T+ +S+ G LRI +G+ LL +++F YPD+Q+++ Sbjct: 67 ERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPDLQLEIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DCA+R+ + +Q S+L+ R++ + M A+P YL P ++++L Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGRLSMVNCASPDYLARYGTPGTLEDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + + P+ +W +D G+ +I S + VN S M + G G+ Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + LV ++ D I+ V YP + K++ F +++ Sbjct: 241 TARFLAYEHLLSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWV 290 >gi|170735107|ref|YP_001774221.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821145|gb|ACA95726.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 305 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE G + Sbjct: 4 NDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTESGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + + S + G L+I+ + G + + EFL +P +++ Sbjct: 64 FYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAVRLN 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + + Sbjct: 124 LDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQTPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H + +G W VD + + L N+ + + G GIALL Sbjct: 183 LAGHTCVLYGR-----ERRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLGIALL 237 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV D+ LV +++ + P T+ +P+ + L+ F F+ Sbjct: 238 PHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|260771320|ref|ZP_05880246.1| transcriptional regulator [Vibrio furnissii CIP 102972] gi|260613636|gb|EEX38829.1| transcriptional regulator [Vibrio furnissii CIP 102972] gi|315180920|gb|ADT87834.1| Transcriptional regulator [Vibrio furnissii NCTC 11218] Length = 295 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 149/292 (51%), Gaps = 15/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 W+ + F VA +GSFT AA++L S +++SR+I+ LE +G+KL R R ++LTE G Sbjct: 3 SWEGVSEFVAVAETGSFTRAAQRLATSVANVSRRIALLEERLGVKLLLRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + P GKL++ + G+ + L +FLL +P ++ Sbjct: 63 QVYYQQCRALLEGLEQAELTVTQMQQTPKGKLKVTAPVTYGEQKIAPLLHDFLLQHPQLE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ +L N+ +D+ D A+RL + + SS I R+L +++ A PHYL P ++ Sbjct: 123 LEFVLTNQKLDLIEQGVDVAVRLGQ-LGDSSFIARRLSNRNLYVCATPHYLAQYGTPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL +H+ + + E+ A R R+ C S + ++ + G+ Sbjct: 182 SELTQHSCLVGTHDHWRFKENQQSRAIRVR----GRVHC---ASGVVLLDAALKDMGLVQ 234 Query: 244 LPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LPDY V+ + R++E + P++ V+ YP+ + K++ +++ Sbjct: 235 LPDYYVEAHLASGRLVE--VLPAYRDEREGVWALYPQNRHLSPKVRLLVDYL 284 >gi|260553726|ref|ZP_05825997.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260405126|gb|EEW98625.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 303 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 144/280 (51%), Gaps = 11/280 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V +GSF AAEQLHL++S+IS+ I+ LE ++G+ LF R R L++T Sbjct: 1 MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVVLFKRTTRSLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + + +++ L + + +G+LR++ + GQ + +F + Sbjct: 61 DEGALFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLIVKFAQQHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+Q+++ +++ +D+ + D IR+ ++ L+ + + M A+P YL Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGQHRMLLCASPDYLNKAGSL 180 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 I++LD H I FG + ++ N +P + L +N +I + Sbjct: 181 EHIEDLDIHTTIADPHFGQIKKWQLQKENSEPLFIKPKAK-----LLLNDLQAIKNAALA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G GIA LPD+++++ + LV+++E + + +F ++ +P Sbjct: 236 GGGIAWLPDWLIQNELQDGTLVQVLETMSSIAFPIHLVWP 275 >gi|304392465|ref|ZP_07374406.1| LysR family transcriptional regulator [Ahrensia sp. R2A130] gi|303295569|gb|EFL89928.1| LysR family transcriptional regulator [Ahrensia sp. R2A130] Length = 293 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 7/196 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +FDW++ R F V A GS + AA L L+Q ++SRQ++GLE +G+ LF R +R L LT+ Sbjct: 7 AFDWNQARAFLVTAEEGSLSAAARALRLTQPTLSRQVAGLEEALGVTLFERTSRALLLTQ 66 Query: 62 QGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G++L R + +++ T Q +V +GK+ IA T + +L LKE Sbjct: 67 AGTELLEHFRGMGDAANRIALTATG-QSQAV--TGKVVIAATNGMATYVLPRVLKELRTK 123 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 PD+QI++I N+ D+ AD AIR R+P Q +L R+L + YA+ YL Sbjct: 124 APDLQIEIIASNETSDLRRREADIAIRHRRP-QDEALFARRLRDMTGQLYASTPYLDEVG 182 Query: 179 EPLSIQELDKHNLITF 194 P + ++L + N + F Sbjct: 183 RPSTAEDLARMNFVGF 198 >gi|253689285|ref|YP_003018475.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755863|gb|ACT13939.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 297 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 135/289 (46%), Gaps = 10/289 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA +L LSQS++S I GLE +G++L R R + T+ G Sbjct: 5 NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 KL + +E+ + L + +P+G +RI ++L LK FL YPDI Sbjct: 65 EKLAHSLGPRFADIESELVALGDMRERPAGNIRITAGEHAVDSILWPVLKPFLANYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI + D IRL + + + R + M +P+Y P + Sbjct: 125 VEITVDNALTDIVLGRFDAGIRLGEQVAKDMIAVRIAPEMSMAVVGSPNYFARHPAPATP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 Q+L H I +P + W ++ E R+ L +NS + +G G Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAW--EFEKNGREIRVRVEGQLTMNSLRQRIDAAQIGLG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +A +P+ V+++ L+R++ + P Y YP ++T F Sbjct: 241 LAYVPEDAVREDIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLF 289 >gi|239833452|ref|ZP_04681780.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821515|gb|EEQ93084.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 378 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 16/252 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++VF V +GSF+ AA L ++ S+IS+ IS +E + ++L R +R L+LT +G Sbjct: 84 EMQVFMRVVEAGSFSEAARLLRMNPSTISKLISRIEARLSVRLLERSSRRLSLTSEGQIY 143 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + E + EL + S G +R+ ++ LG L+ L EFL YP+I I L Sbjct: 144 YERSQGLLRDFEEVERELSQGSASTGGTVRVNASVALGTLALEPLLPEFLAAYPNIVIDL 203 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ +D D A R+ + +SS++ RKL T AAP YL+ P+++ +L Sbjct: 204 SLSDELVDLYLDRTDVAFRI-GTLPNSSMMARKLGTARRKIVAAPAYLERRGTPMTVDDL 262 Query: 187 DKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +HN I F +F A V R + L N+ ++ + V G G Sbjct: 263 AEHNCIGF---------NFRRAAPVWPLKESGRIVDRAVYGSLLANNGETVRRMAVAGLG 313 Query: 241 IALLPDYIVKDN 252 +A + DY +++ Sbjct: 314 LARIGDYHARND 325 >gi|90409972|ref|ZP_01217989.1| hypothetical transcription regulator protein [Photobacterium profundum 3TCK] gi|90329325|gb|EAS45582.1| hypothetical transcription regulator protein [Photobacterium profundum 3TCK] Length = 294 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 149/299 (49%), Gaps = 25/299 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++KL F V +GS + A++ + SSISRQ++ LE+E+GI+L R R + LTE G Sbjct: 4 FNKLHYFNCVVETGSISKASKVFDVQPSSISRQLASLESELGIRLLERTTRNVGLTEAGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + +LE + + + + P G L+I+TT+ G++ + L +F YPDI+I Sbjct: 64 TYYDYSKRIISELEEAKRAVGDLQLSPIGNLKISTTVGFGESRILPLLPKFRKAYPDIRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L + +D+ + D AIR + + SSLI RKLV H ++P Y+ P S + Sbjct: 124 EVELTERIVDLIEENVDIAIRSGR-LPDSSLIARKLVDNHFLLCSSPEYMDENGLPDSPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238 +L H+ + +G + D + + L + Y+++ Q + G Sbjct: 183 QLINHDCVVYG-----------YHGWKDWYLVKNNFQKLAIKHYMTVDSVNGQKQLILHG 231 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF-------TVYFCYPEALKNTGKLKAFRNFI 290 GIAL+P + VKD + R+++ + F + Y Y + K++ F +F+ Sbjct: 232 GGIALIPYWAVKDELDSGRLIQVLPEHQFSPCLHLSSTYAIYQNRNLVSSKMRVFLDFL 290 >gi|238794450|ref|ZP_04638060.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia intermedia ATCC 29909] gi|238726245|gb|EEQ17789.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia intermedia ATCC 29909] Length = 300 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 150/298 (50%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L F V GSF+ AAEQL + S +SR + LE ++G+ L R R ++LT Sbjct: 1 MKAHSDELITFVTVVECGSFSRAAEQLDQANSVVSRTVKKLEGKLGVTLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R + ++ T + E+ ++ + P G LRI + + ++L + EF YP Sbjct: 61 QEGEHYFRRVQNILREMATAENEILDNQLNPKGLLRIDASTPVVLHILAPLMAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ I++ D AIR+ +Q S+L RKL+T + H A+P YL+ P Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHILASPAYLEQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L H + F DL P W LA D + E S L N+ + + C+ G+ Sbjct: 180 QTVADLQHHLCLGFNDL-PVLNR---WPLAGADGQLYEIN-SDLTSNNGETQRRLCLEGN 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++++ + P LV V+ P VY+ +A+ N +L+ F +FI Sbjct: 235 GIACLSDFMIRRDLQRGDLVPLLVEHTLPVVMPINAVYYS-DQAVSN--RLRCFIDFI 289 >gi|261316325|ref|ZP_05955522.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|265987395|ref|ZP_06099952.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|261295548|gb|EEX99044.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|264659592|gb|EEZ29853.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 293 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 27/298 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ P S Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179 Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 ++L++H L + DL+ P+ D+ +V+S L ++ Sbjct: 180 PEDLNRHRLTGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|107028510|ref|YP_625605.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686507|ref|YP_839754.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105897674|gb|ABF80632.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652222|gb|ABK12861.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 305 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE G + Sbjct: 4 NDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTESGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + + S + G L+I+ + G + + EFL +P +++ Sbjct: 64 FYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAVRLN 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + + Sbjct: 124 LDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQTPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H + +G W VD + + L N+ + + G GIALL Sbjct: 183 LAGHTCVLYGR-----ERRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLGIALL 237 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV D+ LV +++ + P T+ +P+ + L+ F F+ Sbjct: 238 PHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|27381664|ref|NP_773193.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354833|dbj|BAC51818.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 9/248 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA GS + AA + LSQ+ +++ ++ LE +G KLF+R R L++TE G Sbjct: 25 LEVFAKVAAIGSLSGAARAMGLSQTMVTKHVAALEARLGTKLFHRTTRRLSITEAGRSYL 84 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E + V+P G LR+ + G + + EF +P++ ++L Sbjct: 85 ESSERILADMEAADAAVARERVEPRGLLRVNVPVVFGTRQIAPAIAEFSERHPEVTVELG 144 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D++ + D AIR+ K ++ SS++ RKL + AAP YL P + +L Sbjct: 145 LNDRLVDLAEEGWDLAIRIGK-LRDSSMVARKLAPNRLVVCAAPSYLAKHGTPRRVADLA 203 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 HN + G + + WL VD GE R+ L+ N+ ++ + G G+A Sbjct: 204 AHNCL--GYTLSQQASAAEWLFGVD---GEIRVQVSGTLRANNGDALRAATLAGLGLARQ 258 Query: 245 PDYIVKDN 252 P +I+ D+ Sbjct: 259 PTFIIADD 266 >gi|193063161|ref|ZP_03044252.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|194427549|ref|ZP_03060097.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|218552783|ref|YP_002385696.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218693670|ref|YP_002401337.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|260842434|ref|YP_003220212.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|300905649|ref|ZP_07123395.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|301305765|ref|ZP_07211851.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|192931069|gb|EDV83672.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|194414319|gb|EDX30593.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|218350402|emb|CAU96087.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218359551|emb|CAQ97091.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|257757581|dbj|BAI29078.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|300402541|gb|EFJ86079.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300838940|gb|EFK66700.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|315253522|gb|EFU33490.1| LysR substrate binding domain protein [Escherichia coli MS 85-1] gi|323160263|gb|EFZ46220.1| hypothetical protein ECE128010_3502 [Escherichia coli E128010] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMASAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|326796629|ref|YP_004314449.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547393|gb|ADZ92613.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 298 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 17/293 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F V R GSF+ AA +L +S S ISR ++ LE+E+G L +R R + L+E G Sbjct: 3 NWEAMEAFVEVVRQGSFSAAAIKLSVSASHISRLVTQLESELGSTLLFRTTRRIRLSEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + L + + + + P G ++ G+ + + +FL +P I+ Sbjct: 63 ELYYQHCRGLPAALSSAEEVISSLNQAPIGSFKMTCATTFGERYIAPVMNDFLTTHPKIE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L N+ +D+ + D AIR+ ++ SSL+ R+L A+ Y+ P ++ Sbjct: 123 LDLHLTNRAVDLIEENYDLAIRM-GAMKDSSLLSRRLCDRQEFLCASREYIDQYGMPHTL 181 Query: 184 QELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 EL+KH KC+ +WL + E ++S + NS L+++ G G Sbjct: 182 SELNKH----------KCLIGSKNHWLFQQNGQRKEVKVSSQWRSNSGLALLDAVKKGLG 231 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LPDY V+ D+ LV ++ P V+ YP++ + KLKA +F+ Sbjct: 232 IAQLPDYYVRKEFDSGRLVPLLSQYQYPYSGVWLVYPKSQTPSPKLKAVCDFL 284 >gi|307729917|ref|YP_003907141.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584452|gb|ADN57850.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 333 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA L LS + ++R ++ LE +G +L R R L+LTE G+ Sbjct: 6 SMRVFVKVADLGSFVRAATSLDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGATY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE + L +P G LRI + G L ++ + YPD+ + Sbjct: 66 LERVRHILDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPDVVPDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ D+ + D I + +P +S+S++ R+L T + A P YL+ P ++L Sbjct: 126 TLADRQADLVDEGFDVGILIGRPARSASIVTRRLTTCQLTVCATPAYLQRHGTPTRPEDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 H ++ + E P G R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 RSHPCLS------RPPEQGGEERVFSGPQGPVRVRPANAIAANNSEMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LV ++ D P + YP L K++ F Sbjct: 240 LPSYLIGRDLAEGRLVELLGDYRLPEIEITIAYPSRLHLPAKVRTF 285 >gi|302187338|ref|ZP_07264011.1| LysR protein [Pseudomonas syringae pv. syringae 642] Length = 311 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRRVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++ P G+LR+ L LL L +F YPDIQI Sbjct: 64 VFYERVVRLLADMDDAETSLSSATSLPRGRLRVDVPSPLASLLLMPALPDFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + I SL+ R++ + + YAAP YL+ P+ Q Sbjct: 124 DMGVSDRMVDLIGENVDCVVRGGE-IADQSLMARRVGDLQLGVYAAPDYLQRMGTPVHPQ 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ + G +P M V G ++ N+Y++ + Sbjct: 183 ELEDSAHRIVGYLWARTGKALPYAMHRDGEKVHVQ---GRYTLAVDDGNAYIAA---GLA 236 Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ + + LV + ED S +Y +P + K++ F ++I Sbjct: 237 GMGILWLPDYMARPHRECGALVSLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292 >gi|293418302|ref|ZP_06660737.1| HTH-type transcriptional regulator yafC [Escherichia coli B088] gi|291324830|gb|EFE64245.1| HTH-type transcriptional regulator yafC [Escherichia coli B088] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIVRGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|152970578|ref|YP_001335687.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330015459|ref|ZP_08308161.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|150955427|gb|ABR77457.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328531680|gb|EGF58511.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 296 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 149/305 (48%), Gaps = 38/305 (12%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL- 66 L +F V GSFT AA+ L + + ++S+ I +E ++G+KL +R R L++T +G Sbjct: 5 LNIFVQVVEQGSFTRAADILQIHRPTVSKAIQQIEDDLGVKLIHRTTRKLSVTAEGEAFY 64 Query: 67 HR---VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 HR V SEV + + ++ P G+LRI + L +L NLK F LYPDI Sbjct: 65 HRARLVLSEVNDMMASF-----SPTLPPRGRLRIDVPLALAHAILIPNLKHFQSLYPDID 119 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+ +K D+ + DC +RL + +Q SS I R+L I M AAP YL+ P ++ Sbjct: 120 VILVSSDKKTDLISEGVDCLVRLGE-LQDSSFISRRLGDIRMVTCAAPSYLQQYGRPETL 178 Query: 184 QELDKHNLIT-FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCV 236 +LD+H I F D ME W T D RP+G S L NS I+ C Sbjct: 179 ADLDQHRAINFFSDHSRDVME---WKFTKDGKIVSLRPVG----SMLVDNS--DILLSCG 229 Query: 237 LGSGIALLPDYIVKDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L +G+ ++ P++ +E+++T YP K L R+++ K R Sbjct: 230 L-AGLGIIQATFNALAPHIASGALEEILTQ-------YPSVSKPVSVLYPDRHYLSPKVR 281 Query: 296 ---DW 297 DW Sbjct: 282 VFIDW 286 >gi|54301902|ref|YP_131895.1| transcriptional regulator [Photobacterium profundum SS9] gi|46915322|emb|CAG22095.1| hypothetical transcription regulator protein [Photobacterium profundum SS9] Length = 299 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 149/299 (49%), Gaps = 25/299 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++KL F V +GS + A++ + SSISRQ++ LE+E+GI+L R R + LTE G Sbjct: 8 FNKLHYFNCVVETGSISKASKVFDVQPSSISRQLASLESELGIRLLERTTRNVGLTEAGK 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + +LE + + + + P G L+I+TT+ G++ + L +F YPDI+I Sbjct: 68 TYYDYSKRIISELEEAKRAVGDLQLSPIGNLKISTTVGFGESRILPLLPKFRQAYPDIRI 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L + +D+ + D AIR + + SSLI RKLV H ++P Y+ P S + Sbjct: 128 EVELTERIVDLIEENVDIAIRSGR-LPDSSLIARKLVDNHFLLCSSPEYMDENGLPDSPE 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238 +L H+ + +G + D + + L + Y+++ Q + G Sbjct: 187 QLINHDCVVYG-----------YHGWKDWYLVKNNFQKLAIKHYMTVDSVNGQKQLILHG 235 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF-------TVYFCYPEALKNTGKLKAFRNFI 290 GIAL+P + VKD + R+++ + F + Y Y + K++ F +F+ Sbjct: 236 GGIALIPYWAVKDELDSGRLIQVLSEHQFSPCLHLSSTYAIYQNRNLVSSKMRVFLDFL 294 >gi|307129507|ref|YP_003881523.1| hypothetical protein Dda3937_01192 [Dickeya dadantii 3937] gi|306527036|gb|ADM96966.1| Hypothetical transcriptional regulator yafC [Dickeya dadantii 3937] Length = 295 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL L+ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ ++ + EL E+ P G LRI + +LL +K F YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETELMETRRTPRGLLRIDAATPVVLHLLMPLVKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ P Sbjct: 121 EVTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVAKHGAP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + EL +H + F + P + W +A D + E + L NS ++ Q + G+ Sbjct: 180 QHVDELARHLCLGFTE--PVSLN--TWPVARADGQLYEIAVG-LSSNSGETLKQLSLTGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV ++ D V P VY Y + +T +++AF +F+ Sbjct: 235 GIACLSDYMIDGEIARGELVELLADQRLPVAMPFSAVY--YSDRAVST-RIRAFIDFL 289 >gi|74310823|ref|YP_309242.1| putative LysR type transcriptional regulator [Shigella sonnei Ss046] gi|170021444|ref|YP_001726398.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739] gi|194438207|ref|ZP_03070299.1| transcriptional regulator, LysR family [Escherichia coli 101-1] gi|253774770|ref|YP_003037601.1| LysR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160322|ref|YP_003043430.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|297516533|ref|ZP_06934919.1| predicted DNA-binding transcriptional regulator [Escherichia coli OP50] gi|300919152|ref|ZP_07135685.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300927900|ref|ZP_07143460.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|312970306|ref|ZP_07784487.1| uncharacterized HTH-type transcriptional regulator yafC [Escherichia coli 1827-70] gi|73854300|gb|AAZ87007.1| putative transcriptional regulator LYSR-type [Shigella sonnei Ss046] gi|169756372|gb|ACA79071.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739] gi|194422871|gb|EDX38866.1| transcriptional regulator, LysR family [Escherichia coli 101-1] gi|242376038|emb|CAQ30723.1| predicted DNA-binding transcriptional regulator LYSR-type [Escherichia coli BL21(DE3)] gi|253325814|gb|ACT30416.1| transcriptional regulator, LysR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972223|gb|ACT37894.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253976432|gb|ACT42102.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|300413750|gb|EFJ97060.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300464055|gb|EFK27548.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|310336955|gb|EFQ02093.1| uncharacterized HTH-type transcriptional regulator yafC [Escherichia coli 1827-70] gi|323165907|gb|EFZ51689.1| hypothetical protein SS53G_3829 [Shigella sonnei 53G] gi|323963571|gb|EGB59128.1| LysR substrate binding domain-containing protein [Escherichia coli H489] gi|323972500|gb|EGB67706.1| LysR substrate binding domain-containing protein [Escherichia coli TA007] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|260853413|ref|YP_003227304.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|260866351|ref|YP_003232753.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257752062|dbj|BAI23564.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257762707|dbj|BAI34202.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|323157957|gb|EFZ44059.1| hypothetical protein ECEPECA14_0166 [Escherichia coli EPECa14] gi|323176520|gb|EFZ62112.1| hypothetical protein ECOK1180_5221 [Escherichia coli 1180] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIVRGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|172061440|ref|YP_001809092.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993957|gb|ACB64876.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 300 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 145/298 (48%), Gaps = 11/298 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + V V +G+F A E + L+Q ++SR ++ LE VGI++F R AR + Sbjct: 1 MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ S + G+LR+ G +L + EFL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P++ +++ + ++ D+ D D A+R P + SS R L+ H+ A+P Y+ Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASPAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235 EP ++L D H + D P + W D + L VN +++ C Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVVFDATGRLTVNDTGALLGAC 237 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G G+A L + +D + LV+++ + +F +Y + + + K++ F +F+ Sbjct: 238 VGGEGVAQLLELYARDILADGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFV 295 >gi|157159669|ref|YP_001456987.1| LysR family transcriptional regulator [Escherichia coli HS] gi|307314702|ref|ZP_07594300.1| transcriptional regulator, LysR family [Escherichia coli W] gi|157065349|gb|ABV04604.1| transcriptional regulator, LysR family [Escherichia coli HS] gi|306905821|gb|EFN36346.1| transcriptional regulator, LysR family [Escherichia coli W] gi|315059421|gb|ADT73748.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|323181620|gb|EFZ67035.1| hypothetical protein ECOK1357_5031 [Escherichia coli 1357] gi|323380020|gb|ADX52288.1| transcriptional regulator, LysR family [Escherichia coli KO11] gi|323945576|gb|EGB41626.1| LysR substrate binding domain-containing protein [Escherichia coli H120] gi|324115452|gb|EGC09394.1| LysR substrate binding domain-containing protein [Escherichia coli E1167] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVAMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|260773319|ref|ZP_05882235.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260612458|gb|EEX37661.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 290 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 15/276 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA GSFT AAE+LH S ++ISR++ LE +GIKL R R +++TE G Sbjct: 4 WEGVNEFVAVAEMGSFTQAAERLHTSVANISRRVLQLEERLGIKLLLRTTRKVSVTEAGM 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L + + + PSGK+++ + G+ + L +FLLLYP +++ Sbjct: 64 LYYQQCKVLVDGLLQAEQAITQIQHTPSGKIKVTAPVTYGEQKIAPLLHDFLLLYPQLEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L N+ +D+ D AIRL + ++ SS I RKL ++ A+ YL P ++ Sbjct: 124 ELVLTNQKLDLIDQGIDLAIRLGQ-LEDSSFIARKLSDRRLYVCASEDYLAQYGTPYALS 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL +H+ LI D +W + ++S ++ +S + ++ + G G+A Sbjct: 183 ELTRHSCLIGTHD---------HWRFKEHQQSRSIKVSGRIRCSSGMVLLDAALKGMGLA 233 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 LPDY V + LV ++ V+ YP+ Sbjct: 234 QLPDYYVTEPLAQGRLVEVLATFRDDREGVWALYPQ 269 >gi|269961320|ref|ZP_06175685.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833871|gb|EEZ87965.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 302 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V GSF+ AA+QL+L++S+IS++I+ LE ++GI+L R R L+LTE G + Sbjct: 7 LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ + + + E P G+L+I + G + + EFL YP I++ L Sbjct: 67 EYASQAVNLAQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKIEVDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++ +D+ D IR+ + + +S+L+ ++L A+P YL+ P +L Sbjct: 127 LEDAMVDLVEQGFDLGIRIGE-LATSNLVAKRLAPCKSVLCASPEYLEEFGVPTKPSDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + + ++ ++ + + P+ + + VN+ +I Q + GSGIA LP + Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPKGNFV-VNNSEAIRQLLLRGSGIAQLPTF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + NL +ME+ P +Y +PE K++ F +FI Sbjct: 243 IAAKDFAAGNLKPLMEEFSLPEHAIYAVFPERKHMPLKVRVFIDFI 288 >gi|94502092|ref|ZP_01308595.1| transcriptional regulator, LysR family protein [Oceanobacter sp. RED65] gi|94425765|gb|EAT10770.1| transcriptional regulator, LysR family protein [Oceanobacter sp. RED65] Length = 291 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 141/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F +VA GSFT A++ L++S + +SR IS LE + KL YR R +TLT +G Sbjct: 4 WEGVVEFTLVAELGSFTKASQNLNISVAQVSRLISLLEKRLKTKLLYRTTRKVTLTAEGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ +V ++LE + L KP G +++ + G+ +Q + EF+ ++P I++ Sbjct: 64 IYYQRCKQVLNELEEAERALGNLQNKPQGTIKLTAPVMYGETFIQPLVHEFMRIHPAIEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ +D+ D AIRL K ++ S+LI + L A+P YLK+ P S+ Sbjct: 124 TANLSNQQLDLIDGGYDLAIRLGK-LKDSTLIAKPLSQRRYRVCASPSYLKDYGAPHSLP 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL HN + + + + I L NS +++ + G+ L Sbjct: 183 ELVDHNCLV-------GQHQYWRFEHKGKQVATKVIGTLSCNSGYALVDAALKNLGLIQL 235 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+Y V D+ +LV ++ T++ YP + K++ NF+ Sbjct: 236 PNYYVDDHIEKGHLVEVLSKYREEPETIWAVYPHNRHLSPKVRQLVNFL 284 >gi|78065958|ref|YP_368727.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77966703|gb|ABB08083.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 307 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 132/303 (43%), Gaps = 12/303 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++ F VA GS + AAE+L +S ++ SR ++ LE +G +L R R L LT+ G Sbjct: 4 WTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLNALEERLGARLVERTTRRLWLTDAGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + HR + +L + E+SV P+G LR+ ++ + L EF YP++ + Sbjct: 64 EYHRRCVAILMELSEADAAVNETSVNPAGTLRVTASVSFASIYIAPALPEFHRRYPNLNV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q++ N+ D D AIR R+ S + RKL A+P YL P + Sbjct: 124 QIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPATPD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ + + F A + S L N I + G GI + Sbjct: 184 ALCDHRLLVYNLANDPYVLHFRHGAKKQSVTIK---SVLDANEGQVIRAAALAGLGILIQ 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK------AR 295 P YI+ D+ LV ++ D P+ TV Y K++ F F+ + AR Sbjct: 241 PLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLGLAR 300 Query: 296 DWK 298 WK Sbjct: 301 KWK 303 >gi|331651113|ref|ZP_08352138.1| putative transcriptional regulator LYSR-type [Escherichia coli M718] gi|331050854|gb|EGI22906.1| putative transcriptional regulator LYSR-type [Escherichia coli M718] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPVACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|115359447|ref|YP_776585.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170698004|ref|ZP_02889086.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|172064242|ref|YP_001811893.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115284735|gb|ABI90251.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] gi|170137066|gb|EDT05312.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|171996759|gb|ACB67677.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 334 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ + AAP YL+ EP +I++L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVSVAAPAYLEKYGEPQTIEDLS 185 Query: 188 KHNLITF 194 H + + Sbjct: 186 DHKAVNY 192 >gi|326404435|ref|YP_004284517.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325051297|dbj|BAJ81635.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 142/291 (48%), Gaps = 10/291 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F GSF+ AAE S++SR ++ LE ++G+ LF+R R L LTE G + + Sbjct: 1 MRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTEPGEQFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + +P G LR+ G+ + + +FL LYP ++++L Sbjct: 61 AQVQAILRNLDEARDSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPGLRLELS 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ AD AIR+ P+ S+LI RKL A+P YL + ++L Sbjct: 121 FTDVRMDLLASGADLAIRI-GPLIDSTLIARKLAGHRRVVCASPSYLAGAPPLAAPRDLL 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN + + L P F P E P L+ + +++ + G GIALLP Sbjct: 180 RHNALIY-TLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIALLPV 238 Query: 247 YIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V ++ LVR++ D + T +Y YP + + K++AF +FI Sbjct: 239 WLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFI 289 >gi|197294944|ref|YP_002153485.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|195944423|emb|CAR57025.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 308 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 10/293 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 3 NMELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + ++ + + S + G L+I+ + G + + EFL +P Sbjct: 63 SGQEFYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P Sbjct: 123 VRLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMVACASPAYLKRHGMPQ 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240 + +L H + +G W VD + + L N+ + + G G Sbjct: 182 TPADLAGHTCVLYGR-----ERRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP +I+ D+ LV +++ + P T+ +P+ + L+ F F+ Sbjct: 237 IALLPHFIIGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFL 289 >gi|78048556|ref|YP_364731.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036986|emb|CAJ24698.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 309 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 20/290 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF VAR GSFT AA QL LSQS++S + LET +GI+L R R + +TE GS+ Sbjct: 17 NDLQVFVTVAREGSFTRAAAQLGLSQSALSHTVRALETRLGIRLLTRTTRSVAMTEAGSR 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L + KP+G +RI T + L + L YPD++++ Sbjct: 77 LFETVAPRLEEIDAQLSALTDFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLKVE 136 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D DI + D IRL + + M A P Y + P + Sbjct: 137 LTVDYGLSDIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPGYFVHHTIPAVPAD 196 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 L +HN I T G L+P DF D+ E ++ N +I++ + Sbjct: 197 LAQHNCIGLRLPTHGGLLPW---DF------DKDGREVKVRVDGQWTFNGSSAILRAALA 247 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G G+A LP+ +V ++ L R++ED P Y YP +++ LK Sbjct: 248 GGGLAFLPETMVLEHVAAGRLRRVLEDWCEPFAGYYAYYPSRRQSSSALK 297 >gi|215485364|ref|YP_002327795.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312964730|ref|ZP_07778981.1| uncharacterized HTH-type transcriptional regulator yafC [Escherichia coli 2362-75] gi|215263436|emb|CAS07756.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312290751|gb|EFR18629.1| uncharacterized HTH-type transcriptional regulator yafC [Escherichia coli 2362-75] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|319794064|ref|YP_004155704.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596527|gb|ADU37593.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 305 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 140/304 (46%), Gaps = 17/304 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V SGS + AAE+L +S+ ++R ++ LE G +L +R R L+LT G + Sbjct: 5 NAMRVFVNVVDSGSLSAAAEKLDMSRPVVTRYVAELEQWTGARLLHRTTRRLSLTAAGEE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L +V Q ++ + P G+LRI T Q L + +++ LYP + + Sbjct: 65 LLPRCRQVLELAGDMQAAVRHPAEAPQGQLRITTGTSFAQAQLADAIADYVRLYPGVAVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ +++ + D AIR I +LI R+L T A+P YLK +PL + E Sbjct: 125 LVLLDRTVNLVDERIDLAIRTAAEID-PNLIARRLTTCRSVVCASPAYLKEHGKPLRVDE 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L + N +T FG + +N+ D P+ + N S+M G+GI Sbjct: 184 LAQRNCLTHSYFGHSL------WNFTRKADGEPLSVAVNGNVSANDAASLMCLARAGAGI 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295 A+LP Y+ + LV + ED +Y Y L+ +F+ F + Sbjct: 238 AMLPTYLTAALLQSGELVSLFEDCEPQVVGMYAVYTSRKHMPATLRTMLDFLAERFTEVP 297 Query: 296 DWKF 299 W Sbjct: 298 SWDL 301 >gi|331681589|ref|ZP_08382225.1| putative transcriptional regulator LYSR-type [Escherichia coli H299] gi|315300185|gb|EFU59422.1| LysR substrate binding domain protein [Escherichia coli MS 16-3] gi|323938750|gb|EGB34996.1| LysR substrate binding domain-containing protein [Escherichia coli E1520] gi|331081163|gb|EGI52325.1| putative transcriptional regulator LYSR-type [Escherichia coli H299] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|56698414|ref|YP_168787.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56680151|gb|AAV96817.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3] Length = 301 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 140/293 (47%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +PDI + + Sbjct: 66 YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLAEFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPKYFEKYGHPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSSQASGNV----WKLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LP Y+ + ++ED + PS +Y YP K++AF +F+ Sbjct: 239 YLPCYLFAEAMEQ-GLVEDAM-PSLPDEVQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|24111639|ref|NP_706149.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 301] gi|30061760|ref|NP_835931.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 2457T] gi|110804255|ref|YP_687775.1| putative LysR type transcriptional regulator [Shigella flexneri 5 str. 8401] gi|24050411|gb|AAN41856.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 301] gi|30040002|gb|AAP15736.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 2457T] gi|110613803|gb|ABF02470.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5 str. 8401] gi|281599559|gb|ADA72543.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2002017] gi|313646735|gb|EFS11194.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella flexneri 2a str. 2457T] gi|332754121|gb|EGJ84491.1| hypothetical protein SF274771_3936 [Shigella flexneri 2747-71] gi|332764632|gb|EGJ94862.1| hypothetical protein SFK671_0216 [Shigella flexneri K-671] gi|332768607|gb|EGJ98788.1| DNA-binding transcriptional regulator LYSR-type [Shigella flexneri 2930-71] gi|333008980|gb|EGK28439.1| hypothetical protein SFK218_0464 [Shigella flexneri K-218] gi|333010748|gb|EGK30174.1| hypothetical protein SFK272_0570 [Shigella flexneri K-272] gi|333021247|gb|EGK40500.1| hypothetical protein SFK227_0229 [Shigella flexneri K-227] gi|333022171|gb|EGK41411.1| hypothetical protein SFK304_0329 [Shigella flexneri K-304] Length = 304 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|209884222|ref|YP_002288079.1| transcriptional regulatory protein, LysR family [Oligotropha carboxidovorans OM5] gi|209872418|gb|ACI92214.1| transcriptional regulatory protein, LysR family [Oligotropha carboxidovorans OM5] Length = 313 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ + +F V SF AA +L S++++S+ +S LE +G +LF R +R L LT+ G Sbjct: 6 DFEAMAIFAKVVELRSFASAARELKFSKATVSKAVSRLEERLGARLFNRSSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +++ E + E + P G +R+A + GQ ++ L EFL YPD+ Sbjct: 66 RALSVRAAQLLADAEAVENEALSQAAAPRGVVRLAVPMTFGQRVIAPLLPEFLAQYPDVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D +R+ + + SSL+ R+L + + AAP YLK P Sbjct: 126 IDLHLSDAMVDLIGEGFDIGVRIAR-LPDSSLVARRLCPMPAYTVAAPSYLKKYGRPTHP 184 Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H ++ P N RP G L+VN+ +++ + G G Sbjct: 185 MHLAQHRCFSYAYRTTPDVWHYANAAGEEVSVRPSGP-----LRVNNGEAVIPALLAGYG 239 Query: 241 IALLPDYIVKD 251 IA LPD+I+ + Sbjct: 240 IADLPDFIIGE 250 >gi|330811368|ref|YP_004355830.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379476|gb|AEA70826.1| Putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 301 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 136/289 (47%), Gaps = 8/289 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GS + AAE L LS+ +SR ++ LE VG +L +R R L+LT G+++ Sbjct: 7 MRVFVTVVDLGSQSAAAEHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTAAGTEIL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ Q + P G LRI+ + GQ L + E++ YP + + L Sbjct: 67 PRCRQMLELSGDMQAAVSTPDDAPRGMLRISASTSFGQAQLASAMAEYVKRYPGVSVDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +++ + D AIR+ + +LI R+L A+PHYL+ PL ++EL Sbjct: 127 MLDRTVNLVDERIDLAIRMSNDLD-PNLIARRLTVCRSVICASPHYLREHSTPLRVEELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +HN +T + K + F + P + N +++Q + G+G+A+LP Y Sbjct: 186 RHNCLTHS-YVGKSLWHFE---QDGEQVSVPVQGNISANEASTLLQATIAGAGVAMLPSY 241 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 N L+R++ +Y Y L++ +F+ LK Sbjct: 242 QAGAHIKNGELIRLLPHAEPRRMNMYAVYASRKHMPSALRSLLDFLVLK 290 >gi|320197306|gb|EFW71922.1| Transcriptional regulator LysR family, yafC [Escherichia coli WV_060327] gi|323191547|gb|EFZ76807.1| hypothetical protein ECRN5871_0163 [Escherichia coli RN587/1] Length = 304 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|153002620|ref|YP_001368301.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|151367238|gb|ABS10238.1| transcriptional regulator, LysR family [Shewanella baltica OS185] Length = 337 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 140/284 (49%), Gaps = 13/284 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS + Sbjct: 11 VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +E+T+ +L PSG+L+IA I G LL L +P I + L+L Sbjct: 71 CRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + IDI + D AI + P+ S+LI R L M A+P YL + ++ KH Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182 Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 L F + C T + E + VN+ +++Q + G G A LP+ Sbjct: 183 PAELAAFNRINHPCANSETLTHTRSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 V ++ LV ++ + +++VY K K+K N Sbjct: 243 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286 >gi|27382074|ref|NP_773603.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355244|dbj|BAC52228.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 150/304 (49%), Gaps = 27/304 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++VF V + S++ AA +L ++ S++S+ I +E +G++LF R R L+LT +G Sbjct: 7 EMQVFLRVVEAQSYSEAARRLLMTPSTVSKLIGRIEARLGVRLFERSTRRLSLTSEGRMY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H + + +L+ + + + G +R+ TT+ G L+ L F +P+I + + Sbjct: 67 HDKSVALLAELDGIERGISRGAAAAGGTIRVNTTVSFGIFGLEPLLPAFWQAHPEIVVDI 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ +D D A R+ P+Q+S+++ R++ + A+P Y+ EP +Q+L Sbjct: 127 SLSDEIVDMYLDRTDVAFRV-GPLQASAMVARRIGVVKRRIVASPDYINRLGEPKRVQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATV----------DRPIGEPRISCLQVNSYLSIMQYCV 236 +HN + F +F A V DR I L N+ S+ + + Sbjct: 186 SRHNCLGF---------NFRRSAPVWPLKESGRIADRAIS----GSLLANNAQSLRRMAI 232 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G G+A L DY V+D+ LV +++ ++ Y + +++AF +F+ + Sbjct: 233 AGIGLARLADYHVRDDISAGRLVEVLKGTAGDEEQIHALYHGGPRLPFRVRAFLDFMCPR 292 Query: 294 ARDW 297 D+ Sbjct: 293 LTDF 296 >gi|146308050|ref|YP_001188515.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576251|gb|ABP85783.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 304 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 137/276 (49%), Gaps = 15/276 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G F+ AAE+L LS S +SRQ++ LE + +LFYR R + LTE G Sbjct: 4 WEGLDEFVAVAECGQFSAAAERLGLSTSQVSRQVARLEERLQSRLFYRSTRRVALTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E + + +P G LR+ + G+ + + +F+ +P +++ Sbjct: 64 LFLQHCQRLQDAREEALRAVGDLGAEPKGLLRMTCAVAYGERFIVPLVNDFMARHPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L N+ +D+ + D AIRL + +Q S L+ +L M+ AAP YL+ P S+ Sbjct: 124 EIELSNRQLDLLHEGLDLAIRLGR-LQDSRLMAARLAPREMYLCAAPEYLQRYGRPHSLS 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL +HN LI D +W + + R+ + NS +++ + G G+ Sbjct: 183 ELARHNCLIGSSD---------HWSFVDNGRETQMRVQGNWRCNSGQAVLDAALRGFGLC 233 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 LPDY V + + LV +++ P+ V+ YP+ Sbjct: 234 QLPDYYVLEHLASGALVSLLQQHRPPNTAVWALYPQ 269 >gi|162451523|ref|YP_001613890.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161162105|emb|CAN93410.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 311 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 139/282 (49%), Gaps = 15/282 (5%) Query: 17 SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76 +GSF+ AA +L ++ S++SR++ LE E+G+ L R R L LT+ G + + + Sbjct: 16 AGSFSRAARRLGVTPSAVSRRVMRLEQELGVALLARTTRSLRLTDDGQAFYARCVRIVEE 75 Query: 77 LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136 L + +S KP G LR+ + LG++++ +L F YPD++I L L ++ +D Sbjct: 76 LGEATEAIARASKKPVGLLRVDAPVALGRDVIAPSLPRFAARYPDVRINLTLRDQHVDPV 135 Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196 + D +R+ P+ SSL+ R+L + AAP Y+ P + +L H+ + G Sbjct: 136 AEGLDLLVRI-GPLGDSSLVARRLGASRLVHCAAPSYIARRGAPATPADLAGHDCV--GY 192 Query: 197 LIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251 L F +L A ++ PI P N + + GSGI + D++ KD Sbjct: 193 LRDGRPTGFRFLTGDGDAVLEVPISGP----FHANDVDVLRHLAIAGSGIIAMFDFLAKD 248 Query: 252 ---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV ++++ T ++ ++ YP+ K++ F +F+ Sbjct: 249 ALAEGTLVTVLDEFPTTTWPIHALYPKNRHLLPKVRVFVDFL 290 >gi|315616894|gb|EFU97511.1| uncharacterized HTH-type transcriptional regulator yafC [Escherichia coli 3431] Length = 304 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|301021452|ref|ZP_07185476.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|300398088|gb|EFJ81626.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] Length = 304 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETINDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|163752174|ref|ZP_02159378.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] gi|161327951|gb|EDP99127.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] Length = 326 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 139/293 (47%), Gaps = 18/293 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + ++ + +S AA+QL L ++++R++ LET +G KL +R AR +LT +G Sbjct: 23 DDIALYIHIVQSRGLATAAKQLRLPAATVTRRLQKLETSIGCKLIHRSARQFSLTAEGEV 82 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ E+ E TQ L SGKL++ ++ LLQ F+ YPDIQ+ Sbjct: 83 YYQAFYELVQTFEATQRSLSADLHLLSGKLKVLAPTNISTGLLQPMWSSFIKSYPDIQLD 142 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+N + DI AD A+R+ P + S L Q+ L I A+ YL N P + E Sbjct: 143 LSLNNANQDILAAQADIALRI-GPQKDSQLYQKGLGFIPTVLVASHDYLNNHAAPAQLDE 201 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSG 240 L +H +I + W T R G P I+ VN Q+ G G Sbjct: 202 LSRHRIIGVNSISV-------WTLT-HRVSGNEVELTPSINTF-VNDIKMASQWACDGIG 252 Query: 241 IALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP + +D + NLV+++ D P +Y +P + K K R+F+ Sbjct: 253 IALLPISEVYQDLRDGNLVQVLIDWSGPKRELYAVWPSGRLLSAKAKCLRDFM 305 >gi|237807187|ref|YP_002891627.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237499448|gb|ACQ92041.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 309 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 140/290 (48%), Gaps = 12/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ +GS + AA +L+L+ ++S++++ LE +G++L R R +T +G Sbjct: 6 ELEFFSILINAGSLSAAAGELNLTPPAVSKRLAQLEARLGVRLLNRSTRHFNITPEGEIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + E+ KP G LRI TT G+N + + FL YP++++QL Sbjct: 66 LNRCRQIIQDINAMEQEVLSLRAKPKGLLRINTTPGFGRNYIARAISAFLKQYPEMEVQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD+ D + D +R P S+++ RK++T A+P YL+N +PL +L Sbjct: 126 TLDSNQPDPTSGDFDIGVRFGLP-PDSNIVARKIMTNRRFVCASPLYLRNNPQPLVPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 KHN I K E + + R + L N + + + G GI + Sbjct: 185 AKHNCIVL-----KQDESASGIWRFKRGDSSETVKVRGTLSSNDGEVVANWALEGHGILI 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ V + LVR++ED P+ +Y YPE + K++ F +F+ Sbjct: 240 RAEWDVNKYLQSGRLVRLLEDYELPAADIYVVYPERHYLSAKVRVFIDFL 289 >gi|82542801|ref|YP_406748.1| transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|300936079|ref|ZP_07151021.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|81244212|gb|ABB64920.1| putative transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|300458754|gb|EFK22247.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|309700410|emb|CBI99699.1| LysR-family transcriptional regulator [Escherichia coli ETEC H10407] gi|320179845|gb|EFW54791.1| Transcriptional regulator LysR family, yafC [Shigella boydii ATCC 9905] gi|332093751|gb|EGI98806.1| hypothetical protein SB359474_2389 [Shigella boydii 3594-74] Length = 304 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|188496226|ref|ZP_03003496.1| transcriptional regulator, LysR family [Escherichia coli 53638] gi|188491425|gb|EDU66528.1| transcriptional regulator, LysR family [Escherichia coli 53638] Length = 304 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ + LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIAHGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|78060745|ref|YP_367320.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77965295|gb|ABB06676.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 305 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 141/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GHEFYARAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GSLEDSTLIARALGAWRMVACASPAYLKRQGTPQT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +L H + +G W VD G R +Q N+ + + G Sbjct: 180 PADLAGHTCVLYGR-----ERRIGWEFRVD---GAARTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD+IV D+ LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPDFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|16128195|ref|NP_414744.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|89107083|ref|AP_000863.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157155058|ref|YP_001461373.1| LysR family transcriptional regulator [Escherichia coli E24377A] gi|170079839|ref|YP_001729159.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|191167015|ref|ZP_03028837.1| transcriptional regulator, LysR family [Escherichia coli B7A] gi|238899601|ref|YP_002925397.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|256024153|ref|ZP_05438018.1| putative DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|300819822|ref|ZP_07100008.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300949360|ref|ZP_07163372.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300958297|ref|ZP_07170440.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|301028966|ref|ZP_07192128.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|301645477|ref|ZP_07245414.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|307136803|ref|ZP_07496159.1| putative DNA-binding transcriptional regulator [Escherichia coli H736] gi|309797923|ref|ZP_07692303.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|331640658|ref|ZP_08341805.1| putative transcriptional regulator LYSR-type [Escherichia coli H736] gi|401473|sp|P30864|YAFC_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator yafC gi|216646|dbj|BAA02171.1| ORF304 [Escherichia coli W3110] gi|1552778|gb|AAB08630.1| hypothetical [Escherichia coli] gi|1786401|gb|AAC73313.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|4902945|dbj|BAA77879.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|157077088|gb|ABV16796.1| transcriptional regulator, LysR family [Escherichia coli E24377A] gi|169887674|gb|ACB01381.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|190902908|gb|EDV62635.1| transcriptional regulator, LysR family [Escherichia coli B7A] gi|238862255|gb|ACR64253.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|260450594|gb|ACX41016.1| transcriptional regulator, LysR family [Escherichia coli DH1] gi|299878065|gb|EFI86276.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|300315003|gb|EFJ64787.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|300451243|gb|EFK14863.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300527580|gb|EFK48642.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|301076266|gb|EFK91072.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|308118463|gb|EFO55725.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|315134893|dbj|BAJ42052.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|320201197|gb|EFW75780.1| Transcriptional regulator LysR family, yafC [Escherichia coli EC4100B] gi|323943433|gb|EGB39584.1| LysR substrate binding domain-containing protein [Escherichia coli E482] gi|331040032|gb|EGI12240.1| putative transcriptional regulator LYSR-type [Escherichia coli H736] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|330446602|ref|ZP_08310254.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490793|dbj|GAA04751.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 294 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 140/287 (48%), Gaps = 9/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T A+ + + ++++R+I LE + I+L RHAR L+LTE G K Sbjct: 4 DDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEAGQK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L T + E +GKLRIA ++ + +LQ L F+L +P I IQ Sbjct: 64 FYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPANITKVMLQPLLNAFMLEHPAISIQ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + N+ + D R+ P + S+LI R++ + A+P YLK EP Q+ Sbjct: 124 LYMSNEPDQLDPTDWDVMFRI-GPQRDSTLIARRINEVKDILVASPDYLKKNPEPKHAQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H L+ L+ + + N G S L V + + C G GI L+P Sbjct: 183 LHEHTLLKGNPLLRWRLNNHNGETVTINERGRFEASELNV-----VRKACCAGLGITLMP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 D +++ +V+++++ VY Y KL+ F +F Sbjct: 238 DVMLEKYIAAGEIVQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284 >gi|324111230|gb|EGC05213.1| LysR substrate binding domain-containing protein [Escherichia fergusonii B253] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAAPPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + S L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVQYS-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|148559785|ref|YP_001259670.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148371042|gb|ABQ61021.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840] Length = 308 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 143/296 (48%), Gaps = 21/296 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 15 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 75 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ +LV + YA YL+ P Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVAHRLVDYTLCLYAHRSYLEENGTPK 193 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYC 235 S ++L++H LI + +ED ++ + P IS +V+S L ++ Sbjct: 194 SPEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAV 242 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 243 RAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296 >gi|159186098|ref|NP_356365.2| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141232|gb|AAK89150.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 299 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 6/256 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F +VA GS T AA L + S +SR I+ LET +G +L R R L LT++G Sbjct: 11 VEAFIIVAEKGSMTEAAVALATTASVLSRAITRLETRLGAQLMRRTTRRLNLTDEGRAYL 70 Query: 68 RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + +Q + +G +RI+ G + L L+ F+ YP++QI+L Sbjct: 71 EQARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHHRLPAMLERFMQAYPEVQIEL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+++D+ + D AIRL P+ S L+ RKL + AAPHYL+ P +++L Sbjct: 131 SITNRNVDLVAEGYDLAIRL-GPLPDSGLVARKLEDASLRLVAAPHYLERAGMPQDVEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 +H + F ++P WL VD R + +QV + L ++ G GI + Sbjct: 190 AEHQCLPF--VMPSTGRCAPWLFHVDGRDLDWTPPGRIQVFDDVLGVVSLAESGLGICQI 247 Query: 245 PDYIVKDNPNLVRIME 260 D+I++D R++E Sbjct: 248 YDFIIRDRVKEGRLVE 263 >gi|330447802|ref|ZP_08311450.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491993|dbj|GAA05947.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 301 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 8/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +FY + GSF+ AAE + L++S +S++I+ LE +G++L YR R L LTE G Sbjct: 5 NNLLLFYHLIDKGSFSKAAEHIGLTKSVVSKRITALEQALGVQLIYRTTRKLALTEAGDV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + EVY+ ++ + + +GK+RI G+ +L + F YPDI I+ Sbjct: 65 FYHHAREVYNAVQNAEDAMSGLGESLTGKIRITVPTISGELILPEAIAAFSQQYPDIHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ + D AIR + SS I R+ V +P YL++ P + Sbjct: 125 MDLDNRFVDLVQEGFDIAIR-TGAMPDSSFIARQFVQARWVICGSPSYLESHGVPTQPND 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L KHN + + E WL I ++ N+ ++ + G G+ + Sbjct: 184 LTKHNCLGYSFQETGANE---WLIEDKLGIHTVKVKGNFTTNNASALRGAAIHGQGLVYV 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V ++ +L+ ++++ + S +Y YP + K+K F Sbjct: 241 PKVLVAEDLHSGSLIEVLDNYVAKSLGIYAVYPYTKQQPMKVKLF 285 >gi|293408297|ref|ZP_06652136.1| conserved hypothetical protein [Escherichia coli B354] gi|291471475|gb|EFF13958.1| conserved hypothetical protein [Escherichia coli B354] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074228|gb|ADJ63627.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 130/277 (46%), Gaps = 13/277 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V R+GSF A +L + ++ISR++ LE +G++L R R L +T Sbjct: 2 LDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +E L ES +P+G LR+A +D N + EF+ LYP + Sbjct: 62 GREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPKV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q++ +L++ D+ + D A R + SSL+ RKLV H+ A+P YL+ P S Sbjct: 122 QLEFVLNDGRADLIAEGIDLAFR-GGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 + +L H + + + W ++ P G + L VN+ ++ G Sbjct: 181 LTDLTAHACLA----TSQAPQHTVW--KLEGPHGPESVKVTPRLCVNTAQGQLRAARAGL 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 GIALLP + + N LV I+ D + Y Y Sbjct: 235 GIALLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVY 271 >gi|209917395|ref|YP_002291479.1| putative transcriptional regulator [Escherichia coli SE11] gi|256020174|ref|ZP_05434039.1| putative transcriptional regulator [Shigella sp. D9] gi|300823392|ref|ZP_07103522.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300926572|ref|ZP_07142358.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|301326092|ref|ZP_07219488.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|331666449|ref|ZP_08367329.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] gi|331675866|ref|ZP_08376583.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|332281337|ref|ZP_08393750.1| transcriptional regulator [Shigella sp. D9] gi|209910654|dbj|BAG75728.1| putative transcriptional regulator [Escherichia coli SE11] gi|300417430|gb|EFK00741.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300524010|gb|EFK45079.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300847152|gb|EFK74912.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|324020680|gb|EGB89899.1| LysR substrate binding domain protein [Escherichia coli MS 117-3] gi|331066294|gb|EGI38172.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] gi|331076426|gb|EGI47703.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|332103689|gb|EGJ07035.1| transcriptional regulator [Shigella sp. D9] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|323528034|ref|YP_004230186.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385036|gb|ADX57126.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 146/289 (50%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + +FT AA++L LS+ +SR++ LE +G+ L R+ R L +T+ G + Sbjct: 4 DDMRIFVATVDAHNFTAAAKRLALSKQFVSRRVMALEEALGVPLLVRNTRKLAVTDLGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + + P G L+++ + G L + +FL + D++ Sbjct: 64 FYERAKRILGEVEDAEQAMSLRRAGPRGLLKVSAPMSFGMLHLSPLVADFLREHRDVRFD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R+ + S+LI +KLV +++ A +P YL+ P + + Sbjct: 124 MELSDRTVDVVGEGFDMAVRI-GVLPDSTLIAQKLVDVNLVACCSPAYLRRRGRPAAPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H+ + +G W VD + + L+ N+ I V G GI L Sbjct: 183 LARHSCLLYGH-----GGVVTWEFAVDGAVKSFEVHGPLRANNGDLIRDAAVAGLGIVRL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+IV D + LV ++++ + VY YP+ +++ ++AF +F+ Sbjct: 238 PDFIVADALRSGRLVTVLDEFLASPTGVYAVYPQHRQSSLTIRAFVDFL 286 >gi|260429970|ref|ZP_05783945.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260418893|gb|EEX12148.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 310 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 142/295 (48%), Gaps = 8/295 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 FDW+ L+VF + R T A L + Q++I+R++ LE +G LF R A G LT Sbjct: 11 GFDWNDLKVFLALHRMKRMTDAGRVLGVDQTTIARRVKALEAAIGTHLFVRRADGFELTR 70 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ E+ H E ++ ++ +G++RI LG L L F P+ Sbjct: 71 AGLRILPFALEIEHSGEKLHEQISGEDMRLAGRVRIGAPDGLGTFFLPAILTRFQRDNPE 130 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++++ ++ ++ A+ L P +S L+ RKL ++H +A+P YL+ P+ Sbjct: 131 VDVEVVPSSRQFRVAEQEVHLALWLSLP-ESGRLLARKLADYNLHFFASPDYLERHGMPM 189 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ +L H L+ + D++ F+ +G R+ +S + + G+G Sbjct: 190 SLADLQDHRLVGYIADML------FSPEVRFLEELGLRRLVRFASSSMAAQREAIREGAG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + +LP ++ ++P LV ++ D TV+ ++ ++ +++A ++ AR Sbjct: 244 LGILPRFMALNDPGLVPVLTDRYLLKRTVWIVSHQSTEDLARVRAVSEYLQRAAR 298 >gi|170690456|ref|ZP_02881623.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170144891|gb|EDT13052.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 145/289 (50%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + +FT AA++L LS+ +SR++ LE +G+ L R+ R L +TE G + Sbjct: 4 DDMRIFVATVDAHNFTAAAKRLSLSKQFVSRRVMALEEALGVPLLVRNTRKLAVTELGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + + P G LR++ + G L + +FL + D++ Sbjct: 64 FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMMHLSPLVADFLREHRDVRFD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R+ + S+LI +KL +++ A +P YL+ P + + Sbjct: 124 MELSDRTVDVVGEGFDMAVRI-GVLPDSTLIAQKLFDVNLVACCSPRYLRRRGTPAAPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +H+ + +G W VD + + L+ N+ I V G GI L Sbjct: 183 LSRHSCLLYGH-----GGVVAWEFAVDGVLKSFEVQGPLRANNGDLIRDAAVAGLGIVRL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+IV D + LV ++++ + VY YP+ +++ ++AF +F+ Sbjct: 238 PDFIVADALRSGELVTVLDEFLPSPTGVYAVYPQHRQSSLTIRAFVDFL 286 >gi|320186404|gb|EFW61136.1| Transcriptional regulator LysR family, yafC [Shigella flexneri CDC 796-83] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PTSLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|320173689|gb|EFW48878.1| Transcriptional regulator LysR family, yafC [Shigella dysenteriae CDC 74-1112] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|171315750|ref|ZP_02904983.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171099162|gb|EDT43938.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 334 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ + AAP YL+ EP +I++L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVSVAAPAYLEKYGEPHTIEDLS 185 Query: 188 KHNLITF 194 H + + Sbjct: 186 DHKAVNY 192 >gi|157368915|ref|YP_001476904.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157320679|gb|ABV39776.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 303 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 138/292 (47%), Gaps = 20/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GS+T AA++ L +SS+S++IS LE +G++L R R L LT G + Sbjct: 9 MALFALVAECGSYTAAAKRAALPKSSVSQRISQLEQTLGLRLLNRTTRQLNLTFAGERYL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG LL +F YPD+ +++ Sbjct: 69 EHCQEMLSAAERADLALQRLRDNPSGRLRISTPAGLGATLLARLAADFQRQYPDVSLEVS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + D A+R KP Q SSLI R+L + A+P YL + + Q+L Sbjct: 129 VSDAMVDMVQEGFDAALRTGKP-QDSSLIGRRLGHAPRYLLASPAYLAQSPQIVDPQQLQ 187 Query: 188 KHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 +H I + + E F W ++ V L + C + G+GI Sbjct: 188 QHRCIAHSSWPVWSLRRGDEYFRW-----------QLPMRHVTDNLLYARECAIAGAGIT 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +LP ++ ++ LV ++ + +Y YP N+ L F + + Sbjct: 237 MLPAFLSREVVAQKQLVEVLPEWQAEGNELYLVYPSRKLNSPALACFIDVVL 288 >gi|313105919|ref|ZP_07792181.1| hypothetical protein PA39016_000120006 [Pseudomonas aeruginosa 39016] gi|90569603|gb|ABD94674.1| putative LysR binding protein [Pseudomonas aeruginosa] gi|310878683|gb|EFQ37277.1| hypothetical protein PA39016_000120006 [Pseudomonas aeruginosa 39016] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 148/296 (50%), Gaps = 8/296 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V R S AAE+L + S++SR++S LE E+G++L R R L +TE G+ Sbjct: 5 DDMEIFVEVVRQNSLRKAAEKLKIPVSTLSRRLSVLEKEIGVRLIRRTTRTLEVTELGNA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + L + + PSG LR++ +D + + ++ +YPDI + Sbjct: 65 YYQRCKPIVDEARVANQSLSDMASAPSGLLRVSMPVDFSIAYIMPLVIKYSEIYPDIDFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D++ + D AIRL + QSSSLI R L+TI + YA+P YLK P S E Sbjct: 125 FDLTPRQVDLTREPLDVAIRLGEQ-QSSSLIARHLITIPRYLYASPEYLKVNGYPSSPSE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + P+ + ++ L + E + L +NS + ++G GIA++ Sbjct: 184 LHSHKCLIMN--TPQERKYWSLLGKDEEAEVELKGRFL-MNSIGMLKNLAIMGEGIAMIA 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 +V+ + LVR++ + +VY L K+ +F +F++ R+ K Sbjct: 241 PGVVRKEASDGELVRVLPEWSGKPLSVYALTENRLSPV-KISSFIDFLYDGLRNEK 295 >gi|27378359|ref|NP_769888.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27351506|dbj|BAC48513.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 297 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 19/286 (6%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 V SGSF A QL LS+S+IS+ I+ LE +G++L R R + TE G + + Sbjct: 3 VVESGSFAEAGRQLRLSRSAISKYIADLEESLGVQLLNRTTRHASPTENGQRYFERAVVI 62 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 ++E + ++ P G LR+ + G L L +F+ Y ++Q+Q++L + + Sbjct: 63 LSEIEAADQAVAQAQSAPRGLLRVNAPMSFGTMRLGPVLADFMARYGELQLQIVLSDDLL 122 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D D D +R+ + ++SSSLI RK+ + A+P YL P Q+L +H +T Sbjct: 123 DPVQDGFDVTLRIAE-LESSSLIARKITPVARMICASPDYLARHGTPKHPQDLREHASLT 181 Query: 194 FGDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +G L+ + +W+ +P S L VN+ + + G G+ALLP++ Sbjct: 182 YGFLLTGNQWKLTGSDGDHWI--------QPAWS-LCVNNAEVLRDVAIKGRGLALLPEF 232 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I D L+ +++D P +Y YP + K++ F +F+ Sbjct: 233 IAADALRKGELLTVLDDYSAPPLALYAVYPPTRHLSVKVRLFIDFL 278 >gi|238758500|ref|ZP_04619676.1| Transcriptional regulator [Yersinia aldovae ATCC 35236] gi|238703200|gb|EEP95741.1| Transcriptional regulator [Yersinia aldovae ATCC 35236] Length = 317 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 138/258 (53%), Gaps = 9/258 (3%) Query: 1 MSFDWDKLR-------VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH 53 MS+D D ++ VF VA +GSF+ AAE+LHL++S++++ I+ LE ++G+ LF+R Sbjct: 1 MSWDSDVMKSELNSIPVFVTVAEAGSFSRAAEKLHLTRSAVTKIIARLEAKLGVALFHRT 60 Query: 54 ARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLK 113 R L++T++G+ H +++ + L + + G+LR++ + G + L Sbjct: 61 TRSLSMTDEGTLYHEYCQRALNEICLVEEILNDGKFEVCGRLRVSVPVLFGHLCIAPLLT 120 Query: 114 EFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173 F +P +++++ ++ +D+ + D AIR+ SSSLI RKL M AAP Y Sbjct: 121 LFADTHPKLKLEISFSDRAVDLVEEGFDLAIRIGALPDSSSLIARKLSEHRMIYCAAPDY 180 Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 L C EP + +EL+ H + + + + ++ + + + L ++ ++ Sbjct: 181 LNRCGEPQTAEELNLHAAVAY--IRSRKVQRWQFRDKTGTKKEFIPNAKLMMDDMQAVTN 238 Query: 234 YCVLGSGIALLPDYIVKD 251 V G+GIA LP ++V++ Sbjct: 239 AAVSGAGIAWLPYWLVRE 256 >gi|170681248|ref|YP_001742331.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5] gi|218698845|ref|YP_002406474.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|170518966|gb|ACB17144.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5] gi|218368831|emb|CAR16579.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|86157173|ref|YP_463958.1| LysR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773684|gb|ABC80521.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 306 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 9/270 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F +GSF AA +L ++ S++SR+++ LE +G L R R L+LT+ G H Sbjct: 7 IQLFAATVEAGSFAAAARRLRVTPSAVSRRVAQLERALGAPLLARTTRALSLTDDGRAFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L Q + S+ +PSG LR+ + LG+ LL L L +PD++I L Sbjct: 67 DRCLRILEELREAQDAIARSAGRPSGLLRVDAPVGLGRALLAPTLPRLLDRHPDLRIALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N ID + D +R+ + + S+LI R+L + AAP YL+ P + EL Sbjct: 127 LRNAFIDPVAEGIDVTVRMGR-LSDSTLIARRLGERRILVCAAPAYLRRHGSPRTPHELA 185 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + D P T D + P + ++ + V G GI L D Sbjct: 186 RHACLGYLRDGRPDPYRFVAGEGTHDVEVDGP----FHSDDAEALREAAVAGKGIVALFD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCY 273 ++V D + LV+++ED F V+ Y Sbjct: 242 FVVADALASGKLVQVLEDHPLAPFPVHALY 271 >gi|15799884|ref|NP_285896.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 EDL933] gi|15829458|ref|NP_308231.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|168758941|ref|ZP_02783948.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|168765058|ref|ZP_02790065.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|168769971|ref|ZP_02794978.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|168776188|ref|ZP_02801195.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|168782933|ref|ZP_02807940.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|168789651|ref|ZP_02814658.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|168800390|ref|ZP_02825397.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|195938580|ref|ZP_03083962.1| putative transcriptional regulator [Escherichia coli O157:H7 str. EC4024] gi|208807266|ref|ZP_03249603.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|208812691|ref|ZP_03254020.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208821909|ref|ZP_03262229.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209397859|ref|YP_002268811.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|217324524|ref|ZP_03440608.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|254791335|ref|YP_003076172.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|261223761|ref|ZP_05938042.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261255829|ref|ZP_05948362.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|291281025|ref|YP_003497843.1| putative transcriptional regulator LYSR-type [Escherichia coli O55:H7 str. CB9615] gi|12512936|gb|AAG54504.1|AE005196_2 putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EDL933] gi|13359660|dbj|BAB33627.1| putative transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|187768453|gb|EDU32297.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|188999584|gb|EDU68570.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|189354341|gb|EDU72760.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|189361022|gb|EDU79441.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|189365066|gb|EDU83482.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|189370769|gb|EDU89185.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|189377333|gb|EDU95749.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|208727067|gb|EDZ76668.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|208733968|gb|EDZ82655.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208742032|gb|EDZ89714.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209159259|gb|ACI36692.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|209745544|gb|ACI71079.1| putative transcriptional regulator [Escherichia coli] gi|209745546|gb|ACI71080.1| putative transcriptional regulator [Escherichia coli] gi|209745548|gb|ACI71081.1| putative transcriptional regulator [Escherichia coli] gi|209745550|gb|ACI71082.1| putative transcriptional regulator [Escherichia coli] gi|209745552|gb|ACI71083.1| putative transcriptional regulator [Escherichia coli] gi|217320745|gb|EEC29169.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|254590735|gb|ACT70096.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|290760898|gb|ADD54859.1| putative transcriptional regulator LYSR-type [Escherichia coli O55:H7 str. CB9615] gi|320190271|gb|EFW64921.1| Transcriptional regulator LysR family, yafC [Escherichia coli O157:H7 str. EC1212] gi|320638228|gb|EFX07956.1| LysR family transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320643612|gb|EFX12756.1| LysR family transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320650348|gb|EFX18825.1| LysR family transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320654623|gb|EFX22624.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660191|gb|EFX27701.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320665442|gb|EFX32504.1| LysR family transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] gi|326338816|gb|EGD62635.1| Transcriptional regulator LysR family, yafC [Escherichia coli O157:H7 str. 1044] gi|326342393|gb|EGD66173.1| Transcriptional regulator LysR family, yafC [Escherichia coli O157:H7 str. 1125] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPVACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|227818763|ref|YP_002822734.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|36959018|gb|AAQ87443.1| Transcriptional regulators, LysR family [Sinorhizobium fredii NGR234] gi|227337762|gb|ACP21981.1| putative LysR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 297 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 21/300 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V+ SFT AA++L +S++++ Q+ LE +GI+LF R R + LTE G+ Sbjct: 8 DGIAAFLTVSTHLSFTKAADELGMSRATVGAQVRQLEDRLGIRLFQRSTRKVVLTEAGAA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S + ++ + + G+LR++ DLG ++ + EFL L P + ++ Sbjct: 68 YREALSGILPQIREAERAATSFQKEAVGRLRVSAPPDLGHLVIVPAVSEFLKLNPAVSLE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +++ D D AIR R + +LI R+L T + A+P Y+ P S + Sbjct: 128 LDLSHRAVNLVEDGFDLAIRGRLEVD-INLITRQLATSQIVICASPAYIDEHGAPESPHD 186 Query: 186 LDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 L H+ + F +L + E+F P + L++N L + +LG Sbjct: 187 LAHHSCLHFAELRWGRIWPFSRNGEEFRI----------PIVPRLELNHSLGLRDAALLG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GI LLPD+IV ++ L+R++ D + + YP K++ F +F+ K R Sbjct: 237 VGIVLLPDFIVGEDLRQGRLIRLLPDWHISTIQLQAVYPANRHIAVKVRRFVSFLAGKLR 296 >gi|15966724|ref|NP_387077.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307315818|ref|ZP_07595329.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307322584|ref|ZP_07601925.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|15075996|emb|CAC47550.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021] gi|306891775|gb|EFN22620.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306898527|gb|EFN29203.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 315 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 10/291 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +F WD L+ F VAR+G + AA +L S +++SR+I LE + +KLF R+ RG LT Sbjct: 4 NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTT 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + E Q+++ + G +R++T G L L EF YP+ Sbjct: 64 MGQRFVETAERMERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLGEFAERYPN 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ + + +S AD A+ L P ++ + L +H Y A YL Sbjct: 124 ISLELVAIQQIMSLSRKEADIAVALAAP-KAGAYHAEVLTPYTLHVYGARSYLAGQPPIR 182 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + +L H + + D+I ++L + +P + Q +S L+ ++ G Sbjct: 183 TRSDLGSHRFVGYIDDMI--FTPGLDYLGEI-----QPGLRAHFQSSSILTQLKAVRQGL 235 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +LP ++ KD PNL ++ D I T + L +++A R+F+ Sbjct: 236 GLCVLPHFMAKDEPNLEIVLPDEIELKRTYWLICHRDLIAIPRVRAVRDFL 286 >gi|300704140|ref|YP_003745742.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299071803|emb|CBJ43129.1| Transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 301 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ LR+F VAR G+ AA +L ++QS+ISR I+ LE + +F R +GL +T +G Sbjct: 7 NWNDLRIFLEVARCGTLGGAARRLKVNQSTISRHITQLEETINAPVFERDNQGLHITARG 66 Query: 64 SKLHRVTSEVYH--KLETTQIELQE----SSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 L + H +E + L E S +PSG +R+ T + L G F Sbjct: 67 RDL------IQHVEAMEANAVALSEALGGSHKEPSGAVRLGTMEGIASLYLAGACVHFNQ 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P I I+L+ + + ++ AD + P + SL + +H YA+ YL + Sbjct: 121 RFPKISIELVTTTQQMHVNQREADIFLSFFPP-EGKSLAVSPIGAFSLHLYASASYLASH 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +LD H ++ D + + ++ WL D I PR++ Q +S ++ M V Sbjct: 180 GTPEEPADLDNHRFASYVDDLIQ-LDTVRWL---DEVISHPRLA-FQSSSMIAQMFAAVD 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ +LP + + L+R++ED + T++ L+ ++KA F+ Sbjct: 235 GGGVVMLPSFARAERFGLIRLLEDQVRVRRTIWMTVHRDLQYLPRIKAVTRFL 287 >gi|107025370|ref|YP_622881.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105894744|gb|ABF77908.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] Length = 334 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I +L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVTVASPDYLERHGEPQTIDDLG 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E ++ + VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFGLIQPPL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + L ++ V V YP + + K++ F ++I Sbjct: 244 FMVLPHLREGRLKEVLPGVKPLPMPVSVVYPHSRHLSPKVRVFVDWI 290 >gi|90580491|ref|ZP_01236297.1| transcriptional regulators, LysR family protein [Vibrio angustum S14] gi|90438400|gb|EAS63585.1| transcriptional regulators, LysR family protein [Vibrio angustum S14] Length = 299 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 141/261 (54%), Gaps = 8/261 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V ++GSF+ A + + +Q++IS++I+ LE ++ KL R +R L LTE G++ + Sbjct: 7 MRAFIRVVQTGSFSATAREQNTTQATISKKIAALEHKLEGKLLTRSSRDLALTEVGAEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + ++ P G ++IA I G + + EFL YPDI + L Sbjct: 67 ERCVAIISELDEAESNVRAHRALPQGLIKIAAPITFGNIFIAPIISEFLARYPDISVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +K +DI + D AIR R+ ++ SSLI R+L A+ Y+ EP++ ++L+ Sbjct: 127 LSDKHVDIISEGVDVAIRARE-LEDSSLIARRLFDNPNILVASSAYIAKYGEPVTPEDLN 185 Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN I + + M ++N+ + + + + +S +I++ + G GIALLP Sbjct: 186 QHNCIIYS--LSSTMNNWNFYNKKIKKSVSVS--GNFKSDSCDAILRSVLDGVGIALLPV 241 Query: 247 YIVKDNPNLVRIMEDVITPSF 267 ++V + N R+ + + PS+ Sbjct: 242 WMVDNEINAGRLKQ--LMPSY 260 >gi|323493398|ref|ZP_08098520.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323312221|gb|EGA65363.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 305 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 149/289 (51%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V SGSF+ AA++L++++S++S++I+ LE E+GI+L R R L+LTE G Sbjct: 4 FSSIPVFVSVVESGSFSAAADKLNITKSAVSKRITHLEEELGIRLINRTTRKLSLTEAGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + + + E +P GKLR+ + G + + EFL LYPD++I Sbjct: 64 RYYEYVAQSLNLAQQGIDAVSELQGQPRGKLRVTAPMSFGVLHVAPLIAEFLELYPDVEI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+++ +D+ + D IR+ + S+L+ ++L A+P Y++ P Sbjct: 124 DLQLEDQMVDLVQESFDIGIRIGH-LPVSNLVAKRLAPCLSVLCASPGYVERYGVPQQPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +H+ + + N R + P+ L VN+ +I + + G+GI L Sbjct: 183 DLSQHSCLQYSYYRGGTEWSLNSAGNEYRVV--PK-GPLSVNNSEAIRRAVLEGAGIGNL 239 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV + R ++ D P+ +Y +P+ K++AF +FI Sbjct: 240 PTFIVAKDIQAGRLQVLLNDYHLPNHAIYAVFPQRKHMPLKVRAFLDFI 288 >gi|254249791|ref|ZP_04943111.1| hypothetical protein BCPG_04665 [Burkholderia cenocepacia PC184] gi|124876292|gb|EAY66282.1| hypothetical protein BCPG_04665 [Burkholderia cenocepacia PC184] Length = 335 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 144/287 (50%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 8 MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 68 ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ + A+P YL+ EP +I +L Sbjct: 128 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLLECVTVASPDYLERHGEPQTIDDLG 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E ++ + VN + + + G G+ P Sbjct: 187 QHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFGLIQPPL 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + L ++ V + YP + + K++ F ++I Sbjct: 245 FMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWI 291 >gi|89093661|ref|ZP_01166608.1| Putative transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] gi|89082057|gb|EAR61282.1| Putative transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] Length = 284 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 10/241 (4%) Query: 13 VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72 VA + SFT AA+ L +S + +SRQIS LE + +KLFYR R +T+TE G + Sbjct: 2 AVAETSSFTSAAKLLGISTAQVSRQISELEDRLAVKLFYRTTRKVTITEAGQVYYHHCKP 61 Query: 73 VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132 + LE + + + P GKLR+ G++ + + EF+ YP +++++ N+ Sbjct: 62 LIEGLEEAERAITQHQTVPKGKLRMTAPTTFGESKIAPLVSEFIAKYPALEVEIHFTNQK 121 Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192 +D+ + D AIRL K ++ SS++ ++L + + +P YL P IQELDKHN + Sbjct: 122 VDLVKEGYDLAIRLGK-LEDSSMMAKRLASRKLQVCGSPDYLAKHGTPHLIQELDKHNCL 180 Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKD 251 G L +F W R+ ++ NS L++ + G G+ LPDY ++ Sbjct: 181 -LGTL------EF-WRFQESGQERNIRVKGNIRFNSGLALTDAALKGLGLVQLPDYYIQQ 232 Query: 252 N 252 + Sbjct: 233 H 233 >gi|311103973|ref|YP_003976826.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758662|gb|ADP14111.1| bacterial regulatory helix-turn-helix protein, LysR family protein 25 [Achromobacter xylosoxidans A8] Length = 311 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 143/304 (47%), Gaps = 24/304 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ AA L + +S +SR+IS LE +G++L R R L LT G Sbjct: 3 DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTSAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+ +++ +P+G + ++ + + Q++L L EFL +P + Sbjct: 63 ERYLHYCREMAASARAADDAMRQLQAEPTGPVIVSCPVSIAQDVLSPLLPEFLDAWPAVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL++ N+ +D+ + D A+R+R + + + L+ R T A+P YL+ P + Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHFGTARGTLVASPSYLQRHGTPDT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235 Q+L H ++F D + W D+ GE P++SC N ++ + + Sbjct: 183 PQDLATHTTLSFSD----PQNEVRWPLRNDK--GEEVHIELKPQLSC---NDFIVLTEAA 233 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291 V G GIALLP + LV+++ +P V+ YP G + A R + F Sbjct: 234 VRGRGIALLPSIATHEQLRRGQLVQVLPQWQSPEGIVHCIYP---SRRGMMPAVRALLDF 290 Query: 292 LKAR 295 L R Sbjct: 291 LSER 294 >gi|300715427|ref|YP_003740230.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299061263|emb|CAX58372.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 304 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 142/301 (47%), Gaps = 23/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L +F V SGSF+ AAEQL ++ S++SR + LET++G++L R R + LT Sbjct: 1 MKANSEELAIFVAVVESGSFSRAAEQLDMANSAVSRAVKKLETKLGVELLTRTTRQVNLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R V ++ + EL ES P G LRI + +LL +K + YP Sbjct: 61 QEGDVYFRRVQSVLQEMAAAENELMESRQMPQGLLRIDAATPVVLHLLMPMIKPYRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P YL+ P Sbjct: 121 EVTLSLVSSETFINLIERKVDIAIRAGN-LTDSSLRARPLFTSYRKIVASPDYLQQHGIP 179 Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 S Q+L H + F + + P D P NS +I Q C Sbjct: 180 HSCQDLAGHVCMGFVEPLSLNRWPIAKADGQLYDITADPTS---------NSGETIKQLC 230 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GIA L DY++ LV ++ D I P F + A+ ++++F +F Sbjct: 231 LIGNGIACLSDYMIDREIREGTLVELLADKILPIEMPFNAVYYSDRAVST--RIRSFIDF 288 Query: 290 I 290 + Sbjct: 289 L 289 >gi|33591652|ref|NP_879296.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33571295|emb|CAE44764.1| probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gi|332381072|gb|AEE65919.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 328 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++S+++ + LE + ++L R R + T G+ Sbjct: 4 FDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ LE + L +S P G+LR+ +L L F YPDI + Sbjct: 64 AYYERVQQLLADLEDAETSLSGASATPRGRLRVDVPSPFASTILVPALPAFQARYPDILL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++++D+ + DC IR + I + SL R + + + YAAP YL P Sbjct: 124 HLGVSDREVDLIDENVDCVIRGGQ-ISNLSLAARHVGDLQLGVYAAPGYLARAGVPAHPG 182 Query: 185 ELD--KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL +H ++ F L P M+ + V G + + N+YL+ + Sbjct: 183 ELQDARHRIVGFSWSRARRLFPCAMQRADERIEV---AGRHALLLDEGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ +P Y+ + + L+R+ D +Y YP+ + KL+AF ++I Sbjct: 237 GMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRAFIDWI 292 >gi|218438460|ref|YP_002376789.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171188|gb|ACK69921.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7424] Length = 294 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 12/276 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ LR F V + G F AA Q++LS+S +S+ + LE ++G++L R R +T T GS Sbjct: 4 FESLRAFTEVIKGGGFAAAARQMNLSRSMVSKLVMNLENDLGVQLLLRTTRRVTPTPTGS 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE Q+ + + +P G L++ + G L + +F+L YPD+Q+ Sbjct: 64 AFYERCVTILAELEEAQLAVSQLHTEPKGLLKVNAPMSFGTLHLAPAIADFMLRYPDLQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL L+++ ID + D +R+ KP +++ LI L+ + AAP YLK P Sbjct: 124 QLTLEDRFIDPVAEGFDVTVRICKPFKAAGLIVHPLMKVKQVLCAAPSYLKKRGTPTHPH 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241 L +H+ + +G W T+ G+ I+ L N+ ++ + G G+ Sbjct: 184 HLREHSCLHYGYF----STGNQW--TLSGAEGDYTIAISGALSSNNGEALKWAGIKGLGV 237 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LP +IV D +LV ++ D +VY YP Sbjct: 238 VFLPTFIVGDELKQGSLVEVLSDYSVGELSVYVVYP 273 >gi|83954563|ref|ZP_00963274.1| Putative transcriptional regulator, LysR family protein [Sulfitobacter sp. NAS-14.1] gi|83840847|gb|EAP80018.1| Putative transcriptional regulator, LysR family protein [Sulfitobacter sp. NAS-14.1] Length = 289 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 17/279 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 W+ + F VA + SFT AA L +S + +SRQ+ LE + KLFYR R +T+TE Sbjct: 2 LSWEGVSEFVAVAEAQSFTAAANSLGISTAQVSRQVGALEARLDTKLFYRTTRKVTITET 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +V L + + + P G+L + + G+N + + +F+ YPD+ Sbjct: 62 GQVYYNHCRQVLDGLAEAERAITDLHQSPKGRLNLTAPVTYGENRIAPLVNDFVRRYPDL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L N+ +D+ + D AIRL + ++ SS++ ++L + + AAP YL P + Sbjct: 122 EVNLRLTNQLLDLVAESYDLAIRLGE-LEDSSMMAKRLASRRHYTCAAPEYLSAHGTPHT 180 Query: 183 IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + ELD +N + T G W R+ L+ NS S++ + Sbjct: 181 LSELDGYNCLQGTLG----------YWRFQEKGTTRHIRVKGNLRCNSGASLVDAALKNL 230 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 GI LPDY V+ L+ +++ P ++ YP+ Sbjct: 231 GIIQLPDYYVEAELRAGRLIPVLDSYRAPDDGIWAIYPQ 269 >gi|167901689|ref|ZP_02488894.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] Length = 305 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 18/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LRVF +A G FT AA L +S S ++R ++ LE +G +L R R L+LTE G Sbjct: 4 FQSLRVFVKIADLGGFTRAASALDISNSVVTRALAELEAHLGTRLLNRTTRSLSLTEAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ +L+ + + + +PSG LRI + G N L L+ + +P I Sbjct: 64 VYLEKARQILVELDDAKEMVAAGNREPSGTLRIVAPVVFGLNSLAPLLQSYSARFPKIVT 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + +D+ + D I + K ++SSS++ R L T + AAP YL+ P ++ Sbjct: 124 DLTLLDHQVDLVAEGFDVGIMVFKQMRSSSIVTRHLTTENWIVCAAPSYLEKHGVPSRVE 183 Query: 185 ELDKHNLITFGDLIPK------CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++ H ++ +P C + A +P+ N+ + + +LG Sbjct: 184 QISHHVCLS----LPADHWGVDCTFTRSGGAACSQPLNR-----FVANNIEMLRRLAILG 234 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A LPDY++K + LV + D P F ++ YP K++ F + I Sbjct: 235 MGVATLPDYLIKGDITCGRLVHLFSDRRHPKFDIHVAYPSRRYLAAKVRTFVDHI 289 >gi|323494674|ref|ZP_08099777.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311107|gb|EGA64268.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 289 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 147/292 (50%), Gaps = 15/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT AA +L S + +SR+IS LE + +KLF R R ++LTE G Sbjct: 3 NWEGVSEFVAVAETQSFTAAASKLVTSVAQVSRRISSLEERLAVKLFNRTTRKVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + P G L++ + G+ L L +FL +P + Sbjct: 63 QVYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTFGEQNLAPLLHQFLEQHPQVD 122 Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+L N+ +D I M + D AIRL + +Q SSLI ++L + ++ A+P YL EP + Sbjct: 123 LDLMLTNQKLDLIEMGF-DVAIRLGR-LQDSSLIAKRLSSRQLYVCASPDYLDRFGEPHT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241 + EL H + G + D A ++ I RI C NS +++ G G+ Sbjct: 181 LSELSHHQCLV-GSVDYWRFRD----AKSEKSIRISGRIHC---NSGYALLDAAKRGLGL 232 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+ V+ D LV ++ + ++ YP+ + K++ +F+ Sbjct: 233 VQLPDHYVQQALDEGELVEVLTEYRDEREGIWALYPQNRNLSPKVRLLIDFL 284 >gi|153831529|ref|ZP_01984196.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] gi|148872039|gb|EDL70856.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] Length = 302 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V GSF+ AA+QL+L++S+IS++I+ LE ++GI+L R R L+LTE G + Sbjct: 7 LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ + + + E P G+L+I + G + + EFL YP I++ L Sbjct: 67 EYASQAVNLAQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKIEVDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++ +D+ D IR+ + + +S+L+ ++L A+P YL+ P +L Sbjct: 127 LEDAMVDLVEQGFDLGIRIGE-LATSNLVAKRLAPCKSVLCASPAYLEEFGVPTKPSDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + + ++ ++ + + P+ + + VN+ +I Q + GSGIA LP + Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPKGNFV-VNNSEAIRQLLLRGSGIAQLPTF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + NL +ME+ P +Y +PE K++ F +FI Sbjct: 243 IAAKDFAAGNLKPLMEEFSLPEHAIYAVFPERKHMPLKVRVFIDFI 288 >gi|270263398|ref|ZP_06191667.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042282|gb|EFA15377.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 295 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 146/298 (48%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L F V SGSF+ AAE+L + S +SR + LE ++G+ L R R ++LT Sbjct: 1 MKANSDELITFVTVVESGSFSRAAERLEQANSVVSRTVKKLEAKLGVTLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G R ++ + + L ES +P G LRI + ++L + EF YP Sbjct: 61 QEGENYFRQVQKILSDMAAAENTLMESRRRPQGLLRIDAATPVVLHVLTPLVAEFRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR+ + + S+L RKL+T + A+P YL P Sbjct: 121 EMSLSLVSSENFINLIERKVDIAIRVGE-LSDSTLKARKLMTSYRRVLASPAYLAQYGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +++ L++H I F DL P W LA D E L NS + C+ G+ Sbjct: 180 QTVEALERHCCIGFNDL-PSLNR---WPLACTDGRQLEI-TPGLTTNSGETQRHLCLHGN 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D+++ + P LV+ V P VY+ A+ N +L++F +F+ Sbjct: 235 GIACLSDFMIDADIARGNLVPILVKETLPVAMPINAVYYS-DSAVSN--RLRSFIDFV 289 >gi|218509705|ref|ZP_03507583.1| transcriptional regulator, LysR family protein [Rhizobium etli Brasil 5] Length = 305 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 14/297 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA SF AA+ L +S ++SR +S LE +G +LF R +R L LT+ G Sbjct: 6 DFEGLAMFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +Y + E + +E + +P G +R+A +D G L L +F L+P+I Sbjct: 66 LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEIS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + + +DI D D A+R+ + SSL+ R+L + AAP YL P Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRIAV-LPDSSLVARRLTPVDRFILAAPAYLDRHGVPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 +EL H+ + + + +D L + G+ + L+ + +++ + G Sbjct: 185 RELMAHHCLGYAY---RARQDVWRLRNGE---GKEEVIVPSGSLRATNSQALVPMALRGL 238 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI LP+++ D + L I+ D P+ +YF P A K++ +F+ + Sbjct: 239 GIIELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMAR 295 >gi|330969973|gb|EGH70039.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 299 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 13/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++VF V GSF AAE L +S+++ISR +S LE +G +L +R R L+LT++G + Sbjct: 6 EMQVFCTVVDKGSFVGAAEPLGMSKAAISRYVSTLEERLGARLLHRTTRRLSLTDEGRQF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + EV ++ + + +S + SG LR+ + G L +F+ YP +++++ Sbjct: 66 YHQAREVLAMMDEAEKAVSSASPEASGVLRVNAPVSFGVLHLAPIWADFMSAYPKVELEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D A+R+ + + +SSL+ R+L + M A+P YL + + ++ Sbjct: 126 SLSDRLVDLVDEGIDAAVRIAR-MDNSSLVGRRLASTRMCLCASPAYLASHAPIEKLSDV 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ + + F + P G + S ++ N+ + + G GI+L Sbjct: 185 AEHGVVAYSNFASGTEWQF------EGPEGSESVHTRSVVRCNNGDTCRAITLAGGGISL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V + +LV I+ + + +Y YP K+++ NF+ Sbjct: 239 QPSFMVAQDLRRGDLVEILPEYQSVELGIYVVYPTRKHLPAKVRSLINFL 288 >gi|293394338|ref|ZP_06638638.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291423316|gb|EFE96545.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 306 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 142/281 (50%), Gaps = 13/281 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + + VF +G+F AA +LHLS+S++ + I+ LE +G++LF+R R +LT Sbjct: 1 MSDRLNGISVFVTAVEAGNFALAASRLHLSRSAVGKTIARLEQRLGVRLFHRTTRSQSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G+ + ++ T + L+ + SG+LR++ + G+ + L E +P Sbjct: 61 DDGALFYERCLRALEEIRTAETLLESGKRQVSGRLRVSMPVLFGRLCIAPILTELAREHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L +++ +D+ D D +R S+ L+ R+L HM A+P YL C EP Sbjct: 121 QLELELSFNDRLVDMIEDGFDLVVRNGALPDSARLVARRLGNHHMAFCASPAYLARCGEP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236 ++ L +H+ + + + NW +++ GE R+ + L ++ ++ + Sbjct: 181 TTLDALAQHDAVAY----LRSGTIRNWEVPLEQ--GETRLIAPRARLVMDDLQALADATM 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G GI LP ++V+D + LVR+++ F + +P Sbjct: 235 AGFGIGWLPCWLVRDQLLSGELVRVLQQYPGAEFNAHALWP 275 >gi|239995448|ref|ZP_04715972.1| transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 296 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 5/291 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F AR GSF+ AA L L +SSIS+ ++ LE ++G +LF R R ++LT G + Sbjct: 5 FVETARLGSFSAAAALLGLPKSSISQAVTNLEKQLGTRLFNRSTRSVSLTSDGETFLPQS 64 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + + Q + S+ SG+LRI N+L L EF+ YP I +++ + Sbjct: 65 IALLSEWDALQSQFITSADSVSGELRIDMPSRFATNILLPILGEFISTYPKITLRVSSVD 124 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + DC IR+ + SSL+ R+L+T ++ +P Y P S+++L H Sbjct: 125 RKVDLIKEGFDCVIRV-GALAGSSLVARRLLTYPIYNCVSPDYATKWGVPQSLEDLANHK 183 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 LI + + +F ++ + E + S L VNS + C G GIA +P V+ Sbjct: 184 LIDYSHTLSHKTPEFEFMKGEELQTVEMQ-SLLSVNSTQAYFAACASGLGIAQIPSVGVE 242 Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 L+R++ + + V YP + +LK F ++ K R+ K Sbjct: 243 SELKEGKLIRVLPEFEAQAMPVNLLYPSRRQMPLRLKVFSEWLVDKLRENK 293 >gi|238023814|ref|YP_002908046.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237878479|gb|ACR30811.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 336 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 105/187 (56%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E T+ Q ++ KP GKLR+ LG+ ++ L EF +PDI +QL Sbjct: 67 ERCVRILAEVEETEASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRERFPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL C EP SI +L Sbjct: 127 LSDRPVDLLQEGVDCVIRI-GVLQDSSLVARRVGLFECVTVASPAYLARCGEPHSIDDLA 185 Query: 188 KHNLITF 194 +H + + Sbjct: 186 EHRAVNY 192 >gi|262196476|ref|YP_003267685.1| LysR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079823|gb|ACY15792.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM 14365] Length = 297 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 18/290 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L +F VA SF+ AA +L + +S++SR I+ LE ++G L +R + L+ G+ Sbjct: 8 YDLLAIFAAVAEESSFSRAAHKLGVGKSTVSRSIARLEEQLGAALIHRSTHKVALSTAGT 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L+ + L +L ES+ +PSG+LR+ D G +L L +F L +P++ Sbjct: 68 ALYERVAPHLAALGQAVGKLPESAAEPSGELRMTVPHDFGAIVLPALLAQFSLRHPEVSF 127 Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + N+ ID+ + D AIR + ++ SSL R+L + M YAAP YL EP S Sbjct: 128 DVRVTNRQIDLVSEGIDLAIRASPQRLKDSSLTARRLGDVLMACYAAPSYLARRGEPRSF 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + KH F L+ LA V + PR+ + + +L + G+G+ Sbjct: 188 GD-PKHEWAVFPPLL--------ALAQVPKEF-RPRV---RADDFLLLRALLAEGAGVGA 234 Query: 244 LPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LP ++ V + + +++ Y +P + + + K+ AFR+F Sbjct: 235 LPVFVAAPYVAEGALQQVLPKELFRGPGGYYLLFPTSAQRSRKVTAFRDF 284 >gi|325524769|gb|EGD02744.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 307 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 10/293 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA+ L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 6 DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G LR+ + G L L FL YP + Sbjct: 66 ELLRDRAIRLLADAELIESEASAQALEPHGLLRVNAPMSFGLRHLSPLLPGFLERYPRVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + SSL R+L + A+P YL C P Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRCGRPAHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L++H +T+ +L F A+ + G P ++ N+ I + G G+AL Sbjct: 185 GDLEQHVCLTYTNLPTPEFWRFRHTASGEE-FGVPVRGRIRTNNADVIGPALIAGHGLAL 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 P+++V D L +M D V P G L+A R + L+ Sbjct: 244 QPEFLVWDALQRGELEEVMPDWKIADINVNLVTP-----PGMLRAARVTVLLE 291 >gi|323496198|ref|ZP_08101256.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323318475|gb|EGA71428.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 299 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 7/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V SGSFTHAA+ S S IS+++S LE +G++L +R R L+LT +G Sbjct: 7 DGMVTFVHVVDSGSFTHAAQITGHSTSYISKEMSKLEERLGVRLLHRTTRTLSLTPEGEL 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + + L +P G LRI+ + G L L +F+ LYP + + Sbjct: 67 YYESCKQLVESAQEIENALGGKQSEPQGHLRISCPVSFGVVELSPMLAKFMSLYPKVTFE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R SSLI R++ T AAP YL+ P E Sbjct: 127 VDLSDRRVDLVAEGIDIAVRAVHKAADSSLISRRIKTAQAVTVAAPSYLRKYGTPKHPSE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L++H IT+ + ++N + D + + + S NS M C+ G GI L Sbjct: 187 LNQHKAITYSYQKNPNLWEYN---SNDGEMIKVEVDSVFAANSPEMEMSMCLEGIGITRL 243 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+ ++ LV + D + YP + K++AF +F+ Sbjct: 244 PEEHTREAIATGRLVELFSDFPKHKIDLCLVYPSRKHMSAKVRAFIDFM 292 >gi|325925597|ref|ZP_08186982.1| transcriptional regulator, LysR family [Xanthomonas perforans 91-118] gi|325543997|gb|EGD15395.1| transcriptional regulator, LysR family [Xanthomonas perforans 91-118] Length = 299 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 20/290 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF VAR GSFT AA QL LSQS++S + LET +GI+L R R + +TE G++ Sbjct: 7 NDLQVFVTVAREGSFTRAAAQLGLSQSALSHTVRALETRLGIRLLTRTTRSVAMTEAGAR 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L + KP+G +RI T + L + L YPD++++ Sbjct: 67 LFETVAPRLEEIDAQLSALTDFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D DI + D IRL + + M A P Y + P + Sbjct: 127 LTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPGYFVHHTIPAVPAD 186 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 L +HN I T G L+P DF D+ E ++ N +I++ + Sbjct: 187 LAQHNCIGLRLPTHGGLLPW---DF------DKDGREVKVRVDGQWTFNGSSAILRAALA 237 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G G+A LP+ +V ++ L R++ED P Y YP +++ LK Sbjct: 238 GGGLAFLPETMVLEHVAAGRLRRVLEDWCEPFAGYYAYYPSRRQSSSALK 287 >gi|167625686|ref|YP_001675980.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167355708|gb|ABZ78321.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 316 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 15/276 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA+ L+L +S++SR++ LE E+G+KLF+R +R +TLT GS Sbjct: 4 EDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELGVKLFHRQSRAMTLTASGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T+ + LE T EL + +G LRI + + EF+ L+P++ ++ Sbjct: 64 FYDKTTSMLATLEQTLSELSGEESEVTGHLRILIFPVPELTHITHAIFEFMDLHPELTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+ + D+ + D A L + ++ R +++ +H +A+P YL P S E Sbjct: 124 IIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHIISETVHFFASPEYLAKAGRPTSPDE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241 L +HN I F P N D P G+ R L VNS + ++ ++G GI Sbjct: 184 LPQHNSILFR--YP------NGRIFNDVPFGKDRTLSVKGNLCVNSLATCLEATLMGRGI 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 +++P K ++ L + EDV + YP Sbjct: 236 SMMPLPFAKEHIESGELEMLFEDVEPYEGKCFLVYP 271 >gi|206564394|ref|YP_002235157.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|17998654|gb|AAG21824.1| putative transcriptional regulator CeoR [Burkholderia cepacia] gi|198040434|emb|CAR56419.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 334 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 144/287 (50%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I +L+ Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVTVASPDYLERHGEPQTIDDLN 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E ++ + VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFGLIQPPL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + L ++ V + YP + + K++ F +++ Sbjct: 244 FMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWV 290 >gi|148258304|ref|YP_001242889.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410477|gb|ABQ38983.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 294 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 147/300 (49%), Gaps = 17/300 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F VA F AA +L LS S+++R I+ LE +G++L R R +TLT+ G + Sbjct: 5 DAMQAFVTVADLNGFAPAARRLKLSPSAVTRLIAALEAHLGVRLLQRTTRSVTLTDAGRR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T + LE ++ + ++P+G+L ++ + G+ + + +L Y ++ + Sbjct: 65 YLERTRRILADLEEAELAAESERLQPAGRLVVSAPVGFGRLHVGPVMAAYLSRYAEVAAE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +++ D DCA+R+ + SSL+ R++ ++ AP Y K+ EP + + Sbjct: 125 LRLEDRQVNLVEDGVDCAVRIGH-LGDSSLVARQVGSMRRVVVGAPAYFKDHGEPRTPEA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L KH I FG +D+ + + E RI+ L N+ + +QY G G+ Sbjct: 184 LAKHQTIQFG-----AADDWRFA----KDGKELRIAVSPRLVTNNADTAIQYAEAGGGVT 234 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + Y D L R++ P ++ +P + + K++AF + I DW+F Sbjct: 235 RVMAYQAADGLRGDRLKRVLAKYEPPPVPIHIVFPSSRLLSAKVRAFIDLIATTC-DWRF 293 >gi|293603675|ref|ZP_06686095.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292817943|gb|EFF77004.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 306 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 142/283 (50%), Gaps = 9/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ + V GSF AA+++ ++S ++RQI+ LE + G++L R R L++T+ G + Sbjct: 7 MQTYAKVVELGSFAAAADKMGQARSVVTRQIAYLEQKYGVRLLNRTTRKLSMTDAGRAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ LQ +PSG+LR++ + G L + E+L YPD+ I L Sbjct: 67 ERVRPILAEVADLELSLQAEGQRPSGRLRVSAPVSFGILHLGPAIAEYLQRYPDVIIDLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ D D A+R+ P+Q SSL+ R L + AAP YL+ P + ++L Sbjct: 127 LNDRVVDLVEDGYDVAVRI-GPLQDSSLVARPLAPQQLLVCAAPAYLQQHGTPATPEDLK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + W D R+ + L+ N+ + + G G+ L P+ Sbjct: 186 QHRCLHYS----YASTGNEWHFEKDGVTHLVRVNAALRANNGDVLRTAALAGHGVILQPE 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++V D+ LV ++ D ++Y YP + K+++F Sbjct: 242 FLVGDDIRAGRLVALLADYAHTPISMYAIYPHRRFLSPKVRSF 284 >gi|270263872|ref|ZP_06192140.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042065|gb|EFA15161.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 302 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 137/291 (47%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L +SS+S++IS LE +G++L R R L LT G + Sbjct: 8 MALFALVAECGSFTAAANRAGLPKSSVSQRISQLEQTLGLRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI+T LG L+ +F YPD+ +++ Sbjct: 68 VHCQEMLSAAERADLALQRLRDNPSGRLRISTPAGLGATLVARLAADFQRQYPDVTLEVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + D A R KP Q SSLI R+L + AAP YL L Q+L Sbjct: 128 VSDAMVDLVQEGYDAAFRTGKP-QDSSLIGRRLGHAPRYLLAAPAYLAQFPPLLHPQQLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQYCVL-GSGIAL 243 +H +C+ W A R E ++ L + L + C + G+GI L Sbjct: 187 QH----------RCIAHRAWPAWSLRRGDEYYRWQLPMLHITDNLLYARECAISGAGITL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP ++ ++ LV ++ + +Y YP N+ L F + + Sbjct: 237 LPAFLSREVVAQKQLVEVLPEWRAEGNELYLVYPSRKLNSPALACFIDVVL 287 >gi|163758456|ref|ZP_02165544.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] gi|162284745|gb|EDQ35028.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] Length = 296 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 142/304 (46%), Gaps = 23/304 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD +RVF VAR+G AA +L ++ ++ +R+I+ LET + +L R G LT + Sbjct: 1 MDWDDIRVFLAVARAGQILAAARRLGINHATAARRITSLETALDAQLIVRRTNGCGLTGE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + SG +RI G + L L +PD+ Sbjct: 61 GEAFLLHAERMEAEMLAAQATLGRTDSAISGTVRIGAPDGFGVSFLAPRLGSLTARHPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++QL+ + + AD AI + +P + L+ RKLV + YA+ YL+ P Sbjct: 121 RLQLVPVPRSFSLPQREADIAITVERPAE-GRLVARKLVDYSLSLYASRSYLEAHGTPKR 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L +H LI++ DLI F NW A +++S + Sbjct: 180 TEDLKEHRLISYVEDLIFSPSLQFTREILRNWTAQ------------FEISSATGQTEAV 227 Query: 236 VLGSGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G+G+A+L DYI + +LVR++ E I S+ Y Y E+ ++ +++ + I A Sbjct: 228 RSGAGVAVLHDYIAGFDSSLVRLLPEHRIERSY--YMVYHESARDLARVRTVADHISAIA 285 Query: 295 RDWK 298 +D K Sbjct: 286 QDHK 289 >gi|78067390|ref|YP_370159.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77968135|gb|ABB09515.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 294 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L LS S+I ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +L+ + EL S+ P G+LR++ TI LL L +F+ YP+I++ + Sbjct: 69 CRRVLAELDAAEQELTHSAEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R +P S L R L H A+P YL P + +L + Sbjct: 126 SDRLVDVVDEGFDAVLRTGQP-SDSRLSSRLLGHFRQHLVASPDYLDRHGTPRTPADLTQ 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W V R P + V NS + + + + G GIA LP + Sbjct: 185 HRCLHY--RFPTSGKLETWPLRVPRAGTLPEVPVAMVSNSAEARLCFALRGLGIACLPIF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+D + L ++++ I +Y +P T KL+AF +++ Sbjct: 243 FVRDALEDGTLRAVLDEHIASCTPIYVLWPSGRHPTPKLRAFVDYM 288 >gi|325521821|gb|EGD00551.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 334 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I++L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGVTVASPEYLERHGEPQTIEDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 H + + + +W +D E +++ + VN + + + G G+ P Sbjct: 186 DHKAVNY--FSSRTGRTIDWSFLIDGKETEVKMNGIVSVNDADAYVTCGLEGFGLIQPPL 243 Query: 247 YIVKDNPNLVRIMEDV--ITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + R+ E + I P + YP + + K++ F ++I Sbjct: 244 FMVLPHLREGRLKEVLPGIKPLPMPISVVYPHSRHLSPKVRVFVDWI 290 >gi|324009114|gb|EGB78333.1| LysR substrate binding domain protein [Escherichia coli MS 57-2] Length = 304 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISCYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|66046182|ref|YP_236023.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63256889|gb|AAY37985.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 299 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 13/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++VF V GSF AAE L +S+++ISR +S LE +G +L +R R L+LT++G + Sbjct: 6 EMQVFCTVVDRGSFVGAAEPLGMSKAAISRYVSTLEERLGARLLHRTTRRLSLTDEGRQF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + EV ++ + + +S + SG LR+ + G L +F+ YP +++++ Sbjct: 66 YHQAREVLAMMDEAEKAVSSASPEASGVLRVNAPVSFGVLHLAPIWADFMSAYPKVELEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D A+R+ + + +SSL+ R+L + M A+P YL + + ++ Sbjct: 126 SLSDRLVDLVDEGIDAAVRIAR-MDNSSLVGRRLASTRMCLCASPAYLASHAPIEKLSDV 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ + + F + P G + S ++ N+ + + G GI+L Sbjct: 185 AEHGVVAYSNFASGTEWQF------EGPEGSESVHTRSVVRCNNGDTCRAITLAGGGISL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V + +LV I+ + + +Y YP K+++ NF+ Sbjct: 239 QPSFMVAQDLRRGDLVEILPEYQSVELGIYVVYPTRKHLPAKVRSLINFL 288 >gi|91783107|ref|YP_558313.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687061|gb|ABE30261.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 303 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 138/289 (47%), Gaps = 5/289 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF + RSGSF A QL +SQS +SR ++ LE +GI+LF R R + LT++G + Sbjct: 10 NGMGVFAAIVRSGSFAEAGRQLDMSQSGVSRSVARLEARLGIRLFDRTTRVVKLTDEGRR 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + LE + G LR+ + +L +L+ FL YP I + Sbjct: 70 FYEQIAPLLAGLEEAEAMAAGDRATVRGHLRVNVDPFFSRLILGPHLEAFLDQYPAIHVD 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ + D+ D D A+R +P ++SSL+ RKL+ + AAP YL+ P +E Sbjct: 130 LMTRDHLGDMVSDGFDLAVRFGEP-RNSSLVARKLLDTRILTVAAPAYLRRHGRPAQPRE 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L+ + + L P+ F W R + + + L +N ++ C+ G GIA + Sbjct: 189 LESGSHVCIEFLNPETGRPFVWEFHQKRKKIQIQTNGRLTLNDVGTMHSACLAGYGIAQV 248 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+ + LV + D F +Y YP K +AF +F+ Sbjct: 249 MEIGVEAMIASGKLVELFPDWRDDRFPLYALYPSRHHLPAKTRAFIDFV 297 >gi|254440111|ref|ZP_05053605.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198255557|gb|EDY79871.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 294 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 145/300 (48%), Gaps = 8/300 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DW L+ F V ++G+ AA QL SQ ++SRQ+ LET+ G+ LF R L LT Sbjct: 1 MNIDWSLLKTFLTVVQAGTVAQAAAQLACSQPTVSRQLKELETQTGLTLFDRRGYRLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G+ + + + + + +G +RI+T+ + + L L YP Sbjct: 61 DAGASILEFAQNMADQANHLALAIAGKETVVNGTIRISTSEVIAYHFLPPVLVTLQEQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I +++I++N ++S AD AIRL +P L++ K+ T+ + A+A+ YL+ P Sbjct: 121 EIDVEIIVENSAANLSAREADIAIRLFRP-DKLGLVRTKIGTLEIGAFASKSYLELYGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L HNL+ + D + ++ F P P + ++ +++L G+G Sbjct: 180 RTLDDLVYHNLLGY-DQSAEILDGFR----KHLPDANPSLFSVRCDNHLVYWNMIRAGNG 234 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 I + + L R++ D+ V+ EAL+ T +++A + L R W+ Sbjct: 235 IGFCSTLMASQDKMLTRVLPDLKPDGNDVWLATHEALQKTPRVRAVWELLSSQLTKRLWE 294 >gi|119899660|ref|YP_934873.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119672073|emb|CAL95987.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 307 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 143/296 (48%), Gaps = 13/296 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FD + L +F VA GSF+ AAE+L L +S++SR+I+ LE +G +L R R L+LT+ Sbjct: 4 FDANDLLIFARVAEGGSFSRAAERLGLPKSTVSRRITLLEERLGERLMLRTTRRLSLTDF 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L ++ +++ Q +PSG+LR++ D +LL L F+ L+P I Sbjct: 64 GLHLLEHARQLAAEVDAVASLAQHRQAQPSGRLRVSMPADFANHLLLDMLSAFVALHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L + +D+ + D AIR+ +SL R++ + + YAA YL P Sbjct: 124 SLDLDLSPRRVDLIGENFDLAIRIGDLPDDASLAARRIRSFPISLYAARDYLAERGTPRV 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEP--RISCLQVNSYLSIMQYCVLG 238 +L +H + L + E W L G P RI+ NS +++Q G Sbjct: 184 PDDLMRHEALR---LFGRSGEPTPWRLLNGEQHWEGLPPGRITA---NSPETLIQLARAG 237 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA +PDY + L+R++ + P+ T + +P + +AF + + Sbjct: 238 QGIAAVPDYFAVAHVRRGELLRVLPEWSLPANTAWAVFPGRKLMPARTRAFLDMVL 293 >gi|254254648|ref|ZP_04947965.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa AUO158] gi|124899293|gb|EAY71136.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa AUO158] Length = 335 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 147/289 (50%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 8 MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 68 ERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ + SSL+ R++ + AAP YL+ EP +I++L Sbjct: 128 LSDRPVDLLQEGVDCVIRV-GALLDSSLVARRVGLFEGVSVAAPAYLEKYGEPQTIEDLS 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E +++ + VN + + + G G+ P Sbjct: 187 QHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGIVSVNDADAYVTCGLEGFGLIQPPL 244 Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 ++V + R+ E + P F + YP + + K++ F ++I Sbjct: 245 FMVLPHLRDGRLKE--VLPGFKPLPLPISVVYPHSRHLSPKVRVFVDWI 291 >gi|209549950|ref|YP_002281867.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535706|gb|ACI55641.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 300 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/300 (29%), Positives = 142/300 (47%), Gaps = 15/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VAR GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 3 DLNDIAVFVTVARYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLLQRTTRKLSLTAQG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S SE L + L E+ KP G L+I+ + GQ + + FL YP+I+ Sbjct: 63 SAYFDQCSEPLAHLIDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFVSAFLKTYPEIR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + N +D+ + D IR + ++ SS++ ++L + AAP Y+K P Sbjct: 123 IDLFVTNLFLDLIAENIDLGIRFGE-LKDSSIVAQRLGKSVRYLVAAPDYMKGRALPSKP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 ++L H + L+ + W R ++S + + ++ + G GI Sbjct: 182 EDLKDHQCV----LLNGRNGEAEWHLVSGRKSVRQQVSGPVSSRDFEAVSAFTYRGHGIG 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298 LLP D LVR++ D + V+ YP T + R +FL+A + WK Sbjct: 238 LLPSTYCDDEIRRGELVRLLPDWSSEEIFVHAVYP-----TRRFLPLRLQVFLEALKAWK 292 >gi|299769346|ref|YP_003731372.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] gi|298699434|gb|ADI89999.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] Length = 342 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 4/243 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SF+ AA+ L L ++S++ I GLE + ++L R R L+LT G+ + Sbjct: 7 MKVFNKVVETNSFSLAADSLGLPRASVTTTIQGLEKHLQVRLLNRTTRKLSLTPDGAVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + +E + +S P G+LRI +G+ +L L +F YPDI + + Sbjct: 67 ERTTRILADVEDVESTFHDSERGPRGRLRIDVKASIGRLILIPMLCDFHSKYPDIDLVIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR+ + ++ SSL+ R++ TI AAP YL EP +I +L Sbjct: 127 MSDRPVDLVQDAVDCVIRIGQ-LKDSSLVARRIGTIQCVTVAAPRYLAEHGEPKTINDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 KH ++ + + + + +W VD I + + VN S + V G G+ P Sbjct: 186 KHQVVHYFN--SRTGRNIDWDFMVDGEIHSVGVKGRVSVNDGDSYIDLAVQGFGLIQCPY 243 Query: 247 YIV 249 Y+V Sbjct: 244 YMV 246 >gi|126726181|ref|ZP_01742023.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] gi|126705385|gb|EBA04476.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] Length = 299 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA+++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAAKKMGISKSAVSKYLSSLEARLGARLLNRTTRRVSPTEIGLVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LR++ D G N + + +FL YPDI + Sbjct: 66 YDRACRVLNDAGEADSLVTSMQSAPSGPLRVSVATDFGVNHMSPIIGDFLSEYPDITFNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D AIR+ + ++ SSL RK+ A+P Y + P I +L Sbjct: 126 VLNNRFVELISEGFDMAIRVGE-MEDSSLRSRKIAVTRKRMIASPEYFEKYGRPEKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ + + + W T P GE R L VN S++ G GIA Sbjct: 185 NDHMLLHYSNQSNGNV----WKLTA--PSGEKRHVRSAGWLTVNDGQSLLNAAKSGLGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D +V M D+ + +Y YP K++A +F+ Sbjct: 239 YLPGFLYSDALARGEVVEAMPDLPEETVGIYAVYPPGRFTQPKVRALIDFL 289 >gi|26246152|ref|NP_752191.1| putative transcriptional regulator YafC [Escherichia coli CFT073] gi|110640423|ref|YP_668151.1| LysR family transcriptional regulator [Escherichia coli 536] gi|191171382|ref|ZP_03032931.1| transcriptional regulator, LysR family [Escherichia coli F11] gi|227884787|ref|ZP_04002592.1| transcriptional regulator YafC [Escherichia coli 83972] gi|300988186|ref|ZP_07178587.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|300990969|ref|ZP_07179419.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|301050543|ref|ZP_07197416.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|331656198|ref|ZP_08357160.1| putative transcriptional regulator LYSR-type [Escherichia coli TA206] gi|26106549|gb|AAN78735.1|AE016755_235 Hypothetical transcriptional regulator yafC [Escherichia coli CFT073] gi|110342015|gb|ABG68252.1| transcriptional regulator, LysR family [Escherichia coli 536] gi|190908316|gb|EDV67906.1| transcriptional regulator, LysR family [Escherichia coli F11] gi|227838228|gb|EEJ48694.1| transcriptional regulator YafC [Escherichia coli 83972] gi|300297751|gb|EFJ54136.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|300305635|gb|EFJ60155.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|300407500|gb|EFJ91038.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|307552055|gb|ADN44830.1| putative transcriptional regulator LYSR-type [Escherichia coli ABU 83972] gi|315292134|gb|EFU51486.1| LysR substrate binding domain protein [Escherichia coli MS 153-1] gi|324011823|gb|EGB81042.1| LysR substrate binding domain protein [Escherichia coli MS 60-1] gi|331054446|gb|EGI26455.1| putative transcriptional regulator LYSR-type [Escherichia coli TA206] Length = 304 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISCYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLRFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|331645377|ref|ZP_08346481.1| putative transcriptional regulator LYSR-type [Escherichia coli M605] gi|331045539|gb|EGI17665.1| putative transcriptional regulator LYSR-type [Escherichia coli M605] Length = 304 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 146/297 (49%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G++L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVRLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV ++ D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELIADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|293413463|ref|ZP_06656112.1| HTH-type transcriptional regulator yafC [Escherichia coli B185] gi|291433521|gb|EFF06494.1| HTH-type transcriptional regulator yafC [Escherichia coli B185] Length = 304 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHELKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|260596624|ref|YP_003209195.1| HTH-type transcriptional regulator YafC [Cronobacter turicensis z3032] gi|260215801|emb|CBA28245.1| Uncharacterized HTH-type transcriptional regulator yafC [Cronobacter turicensis z3032] Length = 296 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 15/254 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L +F V S SF+ AAEQL+L+ S++SR + LE ++G+ L R R L+LT Sbjct: 2 MKASSDELIIFVAVVESRSFSRAAEQLNLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R +V ++ + + EL ES P G LRI + +LL +K F YP Sbjct: 62 EEGERYFRRVQQVLQEMASAETELMESRQTPRGLLRIDAATPVILHLLLPMIKPFRERYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P YL P Sbjct: 122 EVTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFISYRKIVASPDYLARHGVP 180 Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 +I +L +H + F + + P ED L + NS ++ Q C Sbjct: 181 ETICDLKEHICLGFTEPVSLNTWPVACEDGQLLEIT---------PGMTSNSGETLKQLC 231 Query: 236 VLGSGIALLPDYIV 249 + G+GIA L DY++ Sbjct: 232 LTGNGIACLSDYMI 245 >gi|330828658|ref|YP_004391610.1| LysR family transcriptional regulatory protein [Aeromonas veronii B565] gi|328803794|gb|AEB48993.1| LysR-family transcriptional regulatory protein [Aeromonas veronii B565] Length = 299 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 147/290 (50%), Gaps = 10/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 LRVF V GS + A E+L +S++ +SR ++ LE+ +G +L +R R L+LT G + L Sbjct: 7 LRVFVSVVEQGSLSGAGEKLDMSRAMVSRYLAELESWMGARLLHRTTRRLSLTGPGEEAL 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R + + E QI ++ P G+LRI ++ L + LL G ++L YP I + Sbjct: 67 NRARAMLALGEEMEQIAVKGDDA-PKGQLRITSSYSLSEALLVGAANDYLAQYPGTAIDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D A+R+ + +L+ R+L T H A+P YL P +Q+L Sbjct: 126 LLLDRTVNLVEERIDLAVRITNDLD-PNLVARRLGTCHSVVCASPAYLARHPMPHKVQDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN +T+ K + +FN D P P L N +++ + G+GI+L P Sbjct: 185 ALHNCLTY-TYFGKSLWEFN---GPDGPESVPVSGNLSANISSLLLEATLEGAGISLQPR 240 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 Y + ++ LV ++ D VY Y + + L++F +F+ + Sbjct: 241 YSAQPYLEHGELVPLLTDWQPKRLGVYGVYATRKQMSPLLRSFLDFLLAR 290 >gi|296114672|ref|ZP_06833324.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295978768|gb|EFG85494.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 304 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 138/278 (49%), Gaps = 15/278 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + VF V ++GSF+ A L LS+S++ + I+ LE +G++LF+R R ++LTE+G Sbjct: 5 FDGVDVFIEVIKAGSFSVAGSHLALSRSAVGKTIARLEERLGVRLFHRTTRTISLTEEGL 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + H+L+ L+ + +GKLRI + G++ + L YP +++ Sbjct: 65 IYYERCLRAVHELKEGAELLESGRHEVAGKLRITMPLLFGRHCVAPILVNLATQYPQLKL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +D+ D D AIR P L R + T A+P YLKN P I Sbjct: 125 DLHFSDHTVDLIGDRYDLAIRNHSPGIDMGLDVRVVATQGKVVCASPTYLKNSAIPRDID 184 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGS 239 +L +H + + G+ P +L+ +R + PR LQ +SY +I + G+ Sbjct: 185 DLGQHQTLAYLHKGETFPWTF----FLSDGERKKADLNPR---LQFDSYDAIADATLAGA 237 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 G+A LPD++ ++ L+R++ + P F Y +P Sbjct: 238 GVACLPDWLAHNHIESGRLLRLLPNFSMPRFDTYAVWP 275 >gi|73543095|ref|YP_297615.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72120508|gb|AAZ62771.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 303 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 143/304 (47%), Gaps = 18/304 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V GSF AA+QL +S + ++R ++ LE+ +G +L R R L+LT+ G Sbjct: 6 SMRVFAKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + + S SG LR+ T + G +LL + F LYPD+ + Sbjct: 66 LQRCQQILEDVEEAEGVVTARSQSLSGTLRLVTPVMFGLHLLPNLMSRFQQLYPDVVFDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++++DI + D A+ L S L+ R L++ + A+P Y++ EL Sbjct: 126 LLSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLISAEIVLCASPEYVRTHAPLRHAHEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIA 242 H I +P ++ L P GE R L N+ L+ Q + G+A Sbjct: 186 TSHRCIAMR--LPNVEHEWTLLG----PEGEVTVPIRPGLLCSNAELA-HQAALANMGVA 238 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF----LKAR 295 +L Y+ + N NLVR++ P V YP K++AF +F+ ++ R Sbjct: 239 MLSSYLARQNIEAGNLVRVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLLEEGQVRGR 298 Query: 296 DWKF 299 D +F Sbjct: 299 DEQF 302 >gi|317047014|ref|YP_004114662.1| LysR family transcriptional regulator [Pantoea sp. At-9b] gi|316948631|gb|ADU68106.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 302 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 27/312 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+VF V SGSF+ AAEQLH++ S++SR + LET++G+ L R R L LT Sbjct: 1 MKASSDELKVFIAVVESGSFSRAAEQLHMANSAVSRTVKKLETKLGVALLTRTTRQLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G R ++ ++ T + EL + P G LRI + +LL +K F YP Sbjct: 61 HEGEHYFRRVQKLMQEMSTAESELIDRQQAPRGVLRIDAATPVILHLLLPMVKPFRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ + LI I++ D AIR + S+L R L + A P YL P Sbjct: 121 DVTLSLISSESFINLIERKVDVAIRA-GTLTDSTLRARLLFISYRKLVATPAYLAKRGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYC 235 S+ +L +H + F + P + W V + GE P +S NS +I Q C Sbjct: 180 HSVADLAQHECLGFVE--PLRLN--RW--PVAQENGELYDINPGMSS---NSGETIKQLC 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRN 288 + +GIA L DY+V + V ++ D V P VY+ L + +++AF + Sbjct: 231 LDDNGIACLSDYMVDQDIADGTFVELLADQRLPVEMPFNAVYYS---DLGVSQRVRAFID 287 Query: 289 FI--FLKARDWK 298 F+ +++ + W+ Sbjct: 288 FLSDWVQNQPWR 299 >gi|172038666|ref|YP_001805167.1| LysR family transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171700120|gb|ACB53101.1| transcriptional regulatory protein, LysR family [Cyanothece sp. ATCC 51142] Length = 295 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 136/289 (47%), Gaps = 6/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F V GSF AA ++HLS+S++++ + LE +G L YR R +T T G Sbjct: 4 FESIRAFTQVIEEGSFAAAARKMHLSRSAVNKLVINLENHLGASLLYRTTRQVTPTATGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E+ LE ++ + + +P G L+I + G L + +F+ Y I+I Sbjct: 64 AFYERCLEILSTLEEAELSVSQQHNEPQGNLKINAPMSFGIARLGEIIAKFMTRYSKIKI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL L+++ ID + D IR+ P S +L+ K+ T+ A+PHYL P ++ Sbjct: 124 QLTLEDRFIDPISEGYDLVIRIGSPPNSPNLLVHKITTLSRVICASPHYLTTKGMPNNLS 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +H+ + +G LI F +R E N+ + + G GI +L Sbjct: 184 DLKQHSCLHYGYLINGSQWQFIHQGKEERITVE---GFFCSNNGEVLRDAALQGLGIVML 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P++IV + +L I D P + YP + K+K F F+ Sbjct: 241 PNFIVDHYLERGDLQIIFPDYQIPELDLSIIYPINRHLSTKIKLFTEFL 289 >gi|307132675|ref|YP_003884691.1| transcriptional regulator [Dickeya dadantii 3937] gi|306530204|gb|ADN00135.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 298 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 140/303 (46%), Gaps = 24/303 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA Q +++SS+S +IS LE +G++LF R R L LT G + Sbjct: 8 MALFALVAECGSFTEAARQAGIAKSSLSLRISQLEQSLGLRLFNRTTRKLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E ++ +Q PSG+LRI + LG LL EF L +P + + ++ Sbjct: 68 VHCREMRQASERAEMAMQHLRDNPSGRLRITSPAGLGATLLARLTAEFQLRFPAVSLDVV 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ + D A+R KP Q SSLI R L + + A+ YL +EL Sbjct: 128 VADRVIDLVDEGFDAALRTGKP-QDSSLIGRSLGQVPHYLVASAGYLAGSEPIAHPRELQ 186 Query: 188 KHNLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241 H I P+ E F W R+ + L + C L G GI Sbjct: 187 SHRCIAH-RAWPEWGFHHEAEYFLW-----------RLPQSHITDNLLYARACALAGGGI 234 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296 LLP ++ + D+ LV ++ S +Y YP N+ L F +F F RD Sbjct: 235 TLLPAFLCREQLDSGELVCLLPGWQADSNDLYLIYPGRKLNSPALNCFIDFALSFEALRD 294 Query: 297 WKF 299 + F Sbjct: 295 YSF 297 >gi|148553990|ref|YP_001261572.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499180|gb|ABQ67434.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 313 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 15/292 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ F V GSFT AAE+L LS+S+ISR +S LE +G +L +R R L T+ G Sbjct: 4 WETYEAFIAVVECGSFTAAAERLRLSKSAISRSVSSLEARLGSQLLFRTTRRLAPTDLGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++R E++ L E E GKLRI + G+ + E + L+ ++I Sbjct: 64 SVYRRCVELFDMLAEIDAEAMEHDASLRGKLRIVASDSFGECYIAPLAAEMMRLHEQLEI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ ++ IDI D D AIR + SS +Q+ H+ A A+P YL P ++ Sbjct: 124 EFLVTDRTIDIVADGYDMAIRYNAQVDSSLKVQKLYELPHICA-ASPEYLLRAGTPFTLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241 +L +HN + C W + R P +S C N+ +++ + G GI Sbjct: 183 DLTRHNCLV--STFEAC---HAWRFGMGRTQKTPNLSGNWC--SNNGPALLTAALNGIGI 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+ ++ L+ ++ + + V+ YP A + K++AF +++ Sbjct: 236 VWLPELYLRPYIKAGALIELLGEHRSDPMPVWAVYP-ARRQAAKVRAFIDYV 286 >gi|116695056|ref|YP_840632.1| transcriptional regulator [Ralstonia eutropha H16] gi|113529555|emb|CAJ95902.1| transcriptional regulator [Ralstonia eutropha H16] Length = 311 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 138/288 (47%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF AAE + L +++++R I LET +G+KL +R R +++T G+ + Sbjct: 7 MQAFTRVVDVGSFARAAESMDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTNDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + L + P G L + TT L Q +L +L EF YPD+++ L Sbjct: 67 ERCVRILADVEEAEQSLTRQNNSPRGTLSVDTTAGLAQLVLVPHLHEFFQAYPDLKLDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ K ID+ + D +R+ P++ S++ R++ + + YA+P YL P + EL Sbjct: 127 INGKPIDLLQEGVDVVLRVGTPVE-ESMVARRIGHVQLAFYASPIYLNRFGTPHDLAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H + F L + + W + R + + S + N M + G G+A + Sbjct: 186 QHKAVNF--LSNRTGREMPW--PMARGMERSEVLLPSAISTNDADVYMGCALEGHGVARV 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + + + LV +M D T + YP+ + K++ F N+ Sbjct: 242 SRAMAEPYVASGRLVEVMTDWQTEELPISAMYPQNRHLSAKVRVFVNW 289 >gi|126172470|ref|YP_001048619.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|125995675|gb|ABN59750.1| transcriptional regulator, LysR family [Shewanella baltica OS155] Length = 337 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 140/284 (49%), Gaps = 13/284 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS + Sbjct: 11 VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +E+T+ +L PSG+L+IA I G LL L +P I + L+L Sbjct: 71 CRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + IDI + D AI + P+ S+LI R L M A+P YL + ++ KH Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182 Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 L F + C ++ E + VN+ +++Q + G G A LP+ Sbjct: 183 PAELAAFNRINHPCANSETLTHVRNKECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 V ++ LV ++ + +++VY K K+K N Sbjct: 243 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286 >gi|126442625|ref|YP_001061676.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|134283095|ref|ZP_01769797.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167722504|ref|ZP_02405740.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167741482|ref|ZP_02414256.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167827049|ref|ZP_02458520.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167897121|ref|ZP_02484523.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167905499|ref|ZP_02492704.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167913807|ref|ZP_02500898.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167921718|ref|ZP_02508809.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|217424540|ref|ZP_03456038.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|226196555|ref|ZP_03792136.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|126222116|gb|ABN85621.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|134245743|gb|EBA45835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|217392464|gb|EEC32488.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|225931431|gb|EEH27437.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] Length = 299 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 16/299 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D LR+F +GSFT AA++L LS+ +SR++ LE +G++L R+ R L +TE G Sbjct: 3 FDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGH 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +LH + + + T+ + G L+I+ + G L + EFL+ +P +++ Sbjct: 63 ELHARATRILADIAETEEAMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAVRL 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ +D+ + D A+R+ + S+LI R+L + M A +P Y + P + Sbjct: 123 HVELSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHGAPATPA 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L + +G W +D G R L N+ + V G G Sbjct: 182 DLHGRACLLYGQ-----EGRTGWEFMID---GARRTFEVQGALLANNGDVVRDAAVAGLG 233 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IALLP +IV D LV ++E + YP+ ++ + F FI + R+ Sbjct: 234 IALLPHFIVAHALDTGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRE 292 >gi|332187119|ref|ZP_08388859.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] gi|332012819|gb|EGI54884.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] Length = 306 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 14/299 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F V SF+ AA+ + LS++++S+ I+ LE ++ LF+R +R L LTE G Sbjct: 5 DLEAWAIFAAVVEHRSFSAAADAIGLSKATVSKAITRLEAQLNQSLFHRTSRRLALTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + + + ++++ PSG++R+A + G + + + +FL +P I+ Sbjct: 65 KPLADHAARILAEARAAEEAARDAASAPSGRIRLAAPMSFGVSNIAPIIADFLAQHPGIE 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L L + +DI + D A+R+ + SSL R+L I H A+P YL P Sbjct: 125 IELSLSDARVDIVAEGYDIALRIAD-LPDSSLRARRLCGISTHVVASPGYLAEHGHPRHP 183 Query: 184 QELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL +H L+++ ++ P N RP G L NS +++ V G GIA Sbjct: 184 NELGEHRLLSYSNITGPWRFRHPNGAEVSVRPQGP-----LTANSGDALVPAVVAGLGIA 238 Query: 243 LLPDYIVKDNPNL-----VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP +I+ P+L I+ + P ++ P + +++A ++ + RD Sbjct: 239 RLPGFII--GPHLTSGAATEILTEWTPPPIGLHLLTPPSPLRPARVEALIAWLADRVRD 295 >gi|308185770|ref|YP_003929901.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1] gi|308056280|gb|ADO08452.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1] Length = 300 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 141/307 (45%), Gaps = 35/307 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+VF V SGSF+ AAEQL ++ S++SR I LE ++GI L R R L LT Sbjct: 1 MKASSDELKVFVSVVESGSFSRAAEQLQMANSAVSRTIKKLENKLGIALLTRTTRQLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + R ++ T + +L ES +P G LR+ + +LL +K F YP Sbjct: 61 QEGERYFRHVQRFLQEMTTAESDLIESLHEPKGLLRVDAATPVILHLLMPMVKPFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + LI I++ D AIR + S+L R L A+P YL+ P Sbjct: 121 GVTLSLISSESFINLIERKVDIAIRAGN-LTDSTLRARLLFNSFRRVVASPAYLREHGVP 179 Query: 181 LSIQELDKHNLITFGD-----LIPKCME-----DFNWLATVDRPIGEPRISCLQVNSYLS 230 + +LD H + F + P E D +W + NS + Sbjct: 180 QKVTDLDNHACLGFEESPRLNRWPIARESGELYDIDW--------------AISSNSGET 225 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMED----VITPSFTVYFCYPEALKNTGKL 283 I Q C+ G+GIA L DY++ LV ++ D V P VY+ + + ++ Sbjct: 226 IKQLCLTGNGIACLSDYMIDREVAEGTLVEVLADQRLPVEMPFNAVYYS---DIGVSQRV 282 Query: 284 KAFRNFI 290 +AF +F+ Sbjct: 283 RAFIDFL 289 >gi|293395183|ref|ZP_06639469.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422360|gb|EFE95603.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 291 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 124/263 (47%), Gaps = 14/263 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F V R G+ AA +LH+ Q+++ R+I+ E +G KLF R + +L+ Sbjct: 2 MNWDDARFFLAVTRCGTLRKAAHELHVDQATVGRRIAAFEEALGSKLFIRTPKSFSLSPL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + + ++ + G +RIATT + + + L+ +P I Sbjct: 62 GEEMLADVMNMENAVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALRYLRERHPQI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+ DIS AD AIR +P S LI +++ TI M YA YL PL Sbjct: 122 TVTLLTAVNISDISYRGADLAIRGARP-DSDELIIKRMATIEMGLYATQDYLDKHGVPLK 180 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLG 238 L H+L+ F +L+P+ DF GE I+ LQ NS L + G Sbjct: 181 GDHLRGHDLLMFPRELVPRHWNDF---------CGETLINPNVVLQCNSQLLLRSATRNG 231 Query: 239 SGIALLPDYIVKDNPNLVRIMED 261 GI LL ++ ++P+LVRI D Sbjct: 232 LGIGLLSSFLADEDPDLVRIFPD 254 >gi|269104971|ref|ZP_06157667.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268161611|gb|EEZ40108.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 302 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 152/301 (50%), Gaps = 13/301 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V GSFT AAE L L++S++SR+++ LE+ +G++L R R +TLT++ Sbjct: 1 MDLNTVAIFAQVVECGSFTQAAEALELTKSTVSRKVAELESHLGVRLLTRSTRHITLTQE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +++ + ++E+ + + G++ IA +++GQ +L + E+L YP++ Sbjct: 61 GELFYQSCAQMMDIISQAELEVTANQDQVRGRINIAMPVEVGQQVLIPYINEYLRQYPNV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L NK +++ + D +++ PI+ SSLI R+ + H A+P YLK E + Sbjct: 121 VIHLDLTNKPVELISEGIDLYVQI-GPIEDSSLIARQFHSSHRILVASPEYLKQYGEINA 179 Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 +L D H I + N + + E I +QVN+ + CV Sbjct: 180 PTDLKDPHYQIRIDN-----AARVNSAWQISQNEQEFHIELPHRIQVNTISAAADACVDS 234 Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP++I + LV ++ + P + Y + +L+ +F+ K Sbjct: 235 LGIALLPEFICLPHLETGRLVHLLPEWKMPEVPISLVYSQRNLMPKRLRLLIDFLMSKME 294 Query: 296 D 296 + Sbjct: 295 E 295 >gi|117920283|ref|YP_869475.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117612615|gb|ABK48069.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 293 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 145/292 (49%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA +FT AA +L++S + +SRQI LE +G KLFYR R ++LTE+G+ Sbjct: 4 WDGISEFVAVAEVENFTLAALRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ LE + + + P G +++ + G+ + L +F++ YP ++ Sbjct: 64 IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ D AIRL K + SSL+ + L + + A+P Y++ EP ++ Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++HN + + +E+ R L NS ++ + G GI L Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 PDY ++++ L+ ++ ++ YP+ + K++ +++ K Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEK 287 >gi|116693447|ref|YP_838980.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737276|ref|YP_001778536.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|116651447|gb|ABK12087.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|169819464|gb|ACA94046.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 334 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I +L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVTVASPDYLERHGEPQTIDDLG 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E ++ + VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFGLIQPPL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + L ++ V + YP + + K++ F ++I Sbjct: 244 FMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWI 290 >gi|264677462|ref|YP_003277368.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262207974|gb|ACY32072.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 303 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 7/292 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D++ L VF VA SFT AAEQL L++S +S + LE ++G +L R R + L+ Sbjct: 1 MDFNALHVFTRVAELSSFTQAAEQLGLTKSRVSTVVQQLEKQLGTRLLQRTTRHVRLSAD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + E+ LE Q Q ++ G LRI L ++++ L EFL +P + Sbjct: 61 GEQFLERSKELMADLEQLQAMFQPAASGLRGSLRIDMPNSLARDVVIPKLPEFLSAHPLL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ +D+ + DC +R+ P+ + LI R + + M A+P YL+ P + Sbjct: 121 EVGISTSDRRVDVVQEGFDCVVRI-GPLADTDLIARTIGAMEMCNLASPAYLERHGTPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241 + +L +H +I + + + + W + I P S L VN + CV G G+ Sbjct: 180 LADLSRHCIIHYANQLGR--HGAGWEYQRGKEIALHPVRSALVVNGTDAYQAACVAGLGM 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + D LV +M D V YP ++ AF N+I Sbjct: 238 IQAPVRGARHLLDQGLLVEVMPDFRAAPMPVSLLYPHRRHIAPRVTAFLNWI 289 >gi|221213857|ref|ZP_03586830.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221166034|gb|EED98507.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 317 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 4/287 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + D ++ F S T +A +L LS+S +S++IS LE +G++L R R + TE Sbjct: 1 MNMDDIQAFLFAVERQSITDSARRLGLSKSVVSKRISDLERTLGVQLLMRSTRNVIPTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++V S+ +L + E + G+LR+ + L + L + F +P + Sbjct: 61 GRAFYQVASQAMRQLVDVSEAIAERAHGVCGELRVTAPVSLTRRWLGSAIAAFAASHPPL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L D++ +++ ++ D AIR + + S+LI R++ + +P Y+ EP S Sbjct: 121 RVTLETDDRIVNLDVERFDVAIRSAR-LPDSALIARRIGSCERVIVCSPEYIAKHGEPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I +L KH + + P F +P S N+ ++ + G GIA Sbjct: 180 IDQLLKHRCLNYSTAAPSATWSFAAPGGHGKPRAINPTSAFLSNNGETLCDAAIHGVGIA 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LLP YIV D + L R++ D VY Y + + KLK F Sbjct: 240 LLPRYIVDDALRDGRLARVLADASPQDEIVYAVYARSPFVSNKLKLF 286 >gi|86748823|ref|YP_485319.1| LysR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571851|gb|ABD06408.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris HaA2] Length = 299 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 18/302 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA F AA +L LS S+++R ++ LE VG +L R R + LT+ G++ Sbjct: 5 DAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTDIGAR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E + + PSG+L ++ + G+ + + ++LL YPD+ + Sbjct: 65 YLERVKRILSDVEEAEASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPDVAGE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ I++ D DCA+R+ P+ SSL+ R+L T+ A+P YL P+ E Sbjct: 125 LRLSDRIINLVEDGVDCAVRI-GPLADSSLVARQLGTMRRIVVASPDYLGARGVPMVPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 + H+ + FG + W VD + R++C N+ + + Y G G+ Sbjct: 184 VAAHDTVHFGAI----TSTVTWRFVVDGR--DVRVACTPRFATNAADAAILYAERGGGLT 237 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DW 297 + Y + R ++ D P + YP + + K+ R F+ L A DW Sbjct: 238 RVLAYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKV---RTFVDLAAEICDW 294 Query: 298 KF 299 +F Sbjct: 295 RF 296 >gi|308188544|ref|YP_003932675.1| hypothetical protein Pvag_3077 [Pantoea vagans C9-1] gi|308059054|gb|ADO11226.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea vagans C9-1] Length = 301 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 24/281 (8%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V +GSF+ AA +L S S S+ +S LE ++G++LF R R L+ T+ G + Sbjct: 8 RMFVTVLETGSFSAAALRLGTSSSQASKLVSKLEQQLGVQLFKRSTRALSPTDVGRSYYE 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ET ++ES+ P+G+L+I+ G +L L F YP I++ + Sbjct: 68 RVKNLLDAFETLDASVRESATTPTGRLKISAPGSFGTAVLSQVLVAFARRYPLIELDVSF 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ ++I + D AIR+ + SSL+ RKL +H+ A+P YL+ P +++ + Sbjct: 128 SDRAVNIVDEGFDMAIRIGN-LSDSSLVARKLGEVHVRIAASPIYLEQFGTPQHWRDMAQ 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYL------SIMQYCVLG 238 H +C+ D N+ P G I + V L + +Q + G Sbjct: 187 H----------QCIIDTNFRDPWHWPFVSGDGSNEIVTVPVRGRLRFANTEACLQAAMAG 236 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276 GIA LP +I ++VR++++ TP ++ YP A Sbjct: 237 LGIARLPGFIAAPALQQGDIVRLLDNFDTPPLGLFVVYPPA 277 >gi|317049992|ref|YP_004117640.1| LysR family transcriptional regulator [Pantoea sp. At-9b] gi|316951609|gb|ADU71084.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 299 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 136/293 (46%), Gaps = 22/293 (7%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V GSF AA +L S S+ +S LE E+G++LF R R L+ TE G + Sbjct: 8 RMFVAVLEVGSFAGAAARLGTSSGQASKLVSRLEQELGVQLFKRSTRALSPTEVGRAYYE 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + +T ++ES+ P+G+L+I+ G +L L EF YP I++ + Sbjct: 68 RVKSLLEAFDTLDATVRESATTPTGRLKISAPGTFGTAVLARVLVEFARTYPQIELDVNF 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ ++I + D AIR+ K + SSLI R+L + + A+P YL+ P ++L Sbjct: 128 SDRAVNIVDEGFDMAIRIGK-LDDSSLIARRLGDVAVRVAASPGYLQQHGTPQHWRDLAA 186 Query: 189 HNLITFGDLIPKCMEDFN----WLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 H +C+ D N W P G+ P L ++ + +Q + G G Sbjct: 187 H----------QCISDTNFRDPWHWPFITPCGDSVNMPIRGRLCFSNTEACLQAALAGLG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LP +I +V +++ TP ++ YP A K + +F+ Sbjct: 237 IARLPGFIAAPALQRGEIVSLLDAFATPPLGLFALYPPARHLAQKTRLLIDFL 289 >gi|218703457|ref|YP_002410976.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|293403287|ref|ZP_06647378.1| transcriptional regulator [Escherichia coli FVEC1412] gi|298378901|ref|ZP_06988782.1| HTH-type transcriptional regulator yafC [Escherichia coli FVEC1302] gi|300900036|ref|ZP_07118233.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|331661578|ref|ZP_08362501.1| putative transcriptional regulator LYSR-type [Escherichia coli TA143] gi|218430554|emb|CAR11420.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|291429140|gb|EFF02160.1| transcriptional regulator [Escherichia coli FVEC1412] gi|298280014|gb|EFI21518.1| HTH-type transcriptional regulator yafC [Escherichia coli FVEC1302] gi|300356441|gb|EFJ72311.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|331060000|gb|EGI31964.1| putative transcriptional regulator LYSR-type [Escherichia coli TA143] Length = 304 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|270262801|ref|ZP_06191072.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043485|gb|EFA16578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 291 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 8/257 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F VAR G+ AA +LH+ Q+++ R+I+ E +G KLF R + +L+ Sbjct: 2 MNWDDARFFLAVARCGTLRKAANELHVDQATVGRRITAFEENLGSKLFIRTPKSFSLSPL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + + ++ + G +RIATT + + + LK+ +P I Sbjct: 62 GEEMLADVMNMENSVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALKDLREQHPLI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+ DIS AD AIR +P S LI +++ TI M YA YL P Sbjct: 122 TVTLLTAVNISDISYRGADLAIRGARP-DSDELIIKRMATIEMGLYATQDYLDKHGLPTK 180 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H+L+ F +L+P+ +F A +D P + LQ NS L + G GI Sbjct: 181 GDHLRGHDLLMFPRELVPRHWNNFCGEALID-----PNV-VLQCNSQLLLRSATRSGLGI 234 Query: 242 ALLPDYIVKDNPNLVRI 258 LL ++ +P+LVRI Sbjct: 235 GLLSSFLADKDPDLVRI 251 >gi|156977891|ref|YP_001448797.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116] gi|156529485|gb|ABU74570.1| hypothetical protein VIBHAR_06683 [Vibrio harveyi ATCC BAA-1116] Length = 302 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 147/286 (51%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V GSF+ AA+QL+L++S+IS++I+ LE ++GI+L R R L+LTE G + Sbjct: 7 LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ + + + E P G+L+I + G + + EFL YP +++ L Sbjct: 67 EYASQAVNLTQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKVEVDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++ +D+ D +R+ + + +S+L+ ++L A+P YL+ P +L Sbjct: 127 LEDAMVDLVEQGFDLGVRIGE-LATSNLVAKRLAPCKSVLCASPEYLEEFGIPTKPSDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + + ++ ++ + + P+ + + VN+ +I Q + GSGIA LP + Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPKGNFV-VNNSEAIRQLLLSGSGIAQLPTF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + NL +ME+ P +Y +PE K++ F +FI Sbjct: 243 IAGKDFAAGNLKPLMEEFALPEHAIYAVFPERKHMPLKVRVFIDFI 288 >gi|221066656|ref|ZP_03542761.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220711679|gb|EED67047.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 296 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 143/286 (50%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + ++ E ++G++LF+R R +T T +G L Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKSVARFEEKLGVRLFHRSTRSITPTAEGLLLLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E Q EL ++S P G+LR+ ++ L L+ L +F+ YPDIQ+ L Sbjct: 69 SRRILSEIEAAQAELSQASSAPRGRLRV--SLPLVSTLVLPVLADFMHEYPDIQLDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P S L+ RKL M A+P YL P +Q+L H Sbjct: 127 DRLVDVVEEGFDAVVRTGEP-ADSRLVARKLGHFKMVLVASPEYLATYGSPSKVQDLQSH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 + F P + W + P GE P++ V N+ + + + G GIA LPD+ Sbjct: 186 LCLHF--RWPHSGKLEAWPLPPE-PDGEPPKLPVSMVCNNIETRACFALQGLGIACLPDF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ + LVR+M + + +P + K++A +F+ Sbjct: 243 AIREALADGRLVRVMPEQAQREGIFHILWPAGRHVSPKVRALVDFL 288 >gi|237808260|ref|YP_002892700.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237500521|gb|ACQ93114.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 297 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 132/275 (48%), Gaps = 7/275 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L F VVAR SFT AA QL +SQS++S I LE ++GI+L R RG++ TE Sbjct: 4 IDLNNLLAFIVVARERSFTRAAAQLGVSQSALSHTIRRLEEKMGIRLLTRTTRGVSTTEA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L+ Y ++T L + KP+G +RI+T +L L + L LYP++ Sbjct: 64 GERLYINLGPHYEGIQTELSALYALNDKPAGTIRISTHDRPADTILWPKLSKLLPLYPEL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I++ ++ + IDI + D +RL + + R + M AP Y KN P + Sbjct: 124 NIEISINYELIDIVAERFDAGVRLGDQVAKDMIAVRISPDVRMAVVGAPSYFKNRVIPQT 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241 QEL N I +P + W I ++ + N + I+ + G GI Sbjct: 184 PQELTGQNCIRL--RLPTHGGIYAWEFEKGGQILHVQVQGQMIFNQSVHILNAALQGYGI 241 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 A LP+ +K D L++++E P+F Y Y Sbjct: 242 AYLPEEQIKPYVDQGQLIQLLEP-WCPTFPGYHLY 275 >gi|170695208|ref|ZP_02886355.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170139828|gb|EDT08009.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 336 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA L LS + ++R ++ LE +G +L R R L+LTE G+ Sbjct: 6 SMRVFVKVADLGSFVRAANALDLSTAVVTRHVADLEARLGARLLNRTTRRLSLTESGATY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE + L +P G LRI + G L ++ + YPD+ + Sbjct: 66 LERVRHLLDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPDVVPDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ D+ + D I + +P +S+S++ R+L T + A P YL P +L Sbjct: 126 TLADRQADLVEEGFDVGIMVGRPARSASIVTRRLTTCQLTVCATPAYLAQHGTPTRPDDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ + E P G R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 LRHPCLS------RAPEQGGEERVFSGPEGLVRVRTTNAIAANNSEMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LV ++ D P + YP L K++ F Sbjct: 240 LPSYLIGRDLASGRLVELLGDYRLPEIEITIVYPSRLHLPAKVRTF 285 >gi|53717239|ref|YP_106069.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53721325|ref|YP_110310.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|67639933|ref|ZP_00438760.1| putative HTH-type transcriptional regulator YhjC [Burkholderia mallei GB8 horse 4] gi|76817757|ref|YP_336995.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|124381525|ref|YP_001025935.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126445248|ref|YP_001061517.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126446273|ref|YP_001078024.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|126456478|ref|YP_001074457.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134280695|ref|ZP_01767405.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|166999802|ref|ZP_02265632.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|167722311|ref|ZP_02405547.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167741307|ref|ZP_02414081.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167818483|ref|ZP_02450163.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167826870|ref|ZP_02458341.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167848383|ref|ZP_02473891.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167896938|ref|ZP_02484340.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167905321|ref|ZP_02492526.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167913619|ref|ZP_02500710.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167921562|ref|ZP_02508653.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|217422973|ref|ZP_03454475.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|226194807|ref|ZP_03790399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237507442|ref|ZP_04520157.1| LysR substrate binding domain protein [Burkholderia pseudomallei MSHR346] gi|242312205|ref|ZP_04811222.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254176362|ref|ZP_04883020.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254189398|ref|ZP_04895908.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254195563|ref|ZP_04901991.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254200925|ref|ZP_04907290.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254204888|ref|ZP_04911241.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254264083|ref|ZP_04954948.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254299455|ref|ZP_04966904.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|254359007|ref|ZP_04975279.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52211739|emb|CAH37738.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|52423209|gb|AAU46779.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|76582230|gb|ABA51704.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|126224739|gb|ABN88244.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|126230246|gb|ABN93659.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|126239127|gb|ABO02239.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|134247717|gb|EBA47801.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|147748537|gb|EDK55612.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147754474|gb|EDK61538.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|148028194|gb|EDK86154.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|157809376|gb|EDO86546.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157937076|gb|EDO92746.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|160697404|gb|EDP87374.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|169652310|gb|EDS85003.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|217393881|gb|EEC33901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|225933151|gb|EEH29146.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|234999647|gb|EEP49071.1| LysR substrate binding domain protein [Burkholderia pseudomallei MSHR346] gi|238520553|gb|EEP84012.1| putative HTH-type transcriptional regulator YhjC [Burkholderia mallei GB8 horse 4] gi|242135444|gb|EES21847.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|243064118|gb|EES46304.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254215085|gb|EET04470.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|261826363|gb|ABM99362.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] Length = 334 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 144/287 (50%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLR+ +G+ +L +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQVNNRKPHGKLRVDMPGSIGRLILIPSLCEFHSRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I+EL Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQTIEELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E +++ L VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGLEGFGLIQPPL 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N L ++ + YP + + K++ F +++ Sbjct: 244 FMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWV 290 >gi|90424209|ref|YP_532579.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90106223|gb|ABD88260.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 303 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V SGSF+ AA L++SQ ++S+Q++ LE +G +L R++R L +T G Sbjct: 5 DAMRMFVRVVESGSFSQAARDLNVSQPTVSKQLAALELRLGTQLLSRNSRALAVTPAGQD 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T + ++ + + E PSG +R+ + G+ + L +F +P++ I+ Sbjct: 65 YYEATVRILQDIDVVEERILEGQAAPSGLVRVTLSPAFGRMFVIPRLPDFRRRFPNVAIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + + +D+ + D AIR+ + + S+L+ R + + M A+ YL P ++ E Sbjct: 125 MEISGRHVDLIEEGMDVAIRIGR-LSDSALVARHIGDMRMITVASAGYLAQHGTPQTVNE 183 Query: 186 LDKHNLITF---GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H +++ GD+I W RP+ + N + + G GI Sbjct: 184 LRDHQRVSYIYQGDII-------GWGFQVAGRPVTLDGGGAFRTNDAEHVRGAVLAGLGI 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A ++ D + +VRI++ PSF + + +++ F +F+ Sbjct: 237 AHHASWLFTDVVASGEVVRILDQHAPPSFPINAVTAAGRRMPSRVRQFIDFL 288 >gi|127512468|ref|YP_001093665.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126637763|gb|ABO23406.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 289 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 11/290 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA + SFT A ++L +S + +SRQ+ LE + KL YR R +++TE+G Sbjct: 3 EWEGVSEFVAVAETESFTKAGKRLGISTAQVSRQVGALEQRLDTKLLYRTTRKVSMTEEG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +R +V LE + L P G LR+ + G+ + + +FLL YP+++ Sbjct: 63 HLYYRHCRQVLDGLEEAERALSSLRGLPQGLLRMTAPVAYGEKYILPVVNDFLLAYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + L N+ + + D AIR+ K + SSLI +++ + A+P YLK EP S+ Sbjct: 123 VDIALTNRQVRLVDAGIDLAIRIGK-LADSSLIAKRISQRINYVCASPDYLKRFGEPHSL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL +HN + G+ D+ R L+ N+ + + G G+ Sbjct: 182 SELSRHNCL-IGN------HDYWRFLEQGRERQLKIKGNLRCNTGHGLRDAALKGLGLVQ 234 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+Y + + LV ++ P+ V+ YP+ + K+K F+ Sbjct: 235 LPNYYIGQDLKAGRLVSVLNAYQEPNEGVWALYPQNRHLSPKVKLMVEFL 284 >gi|332531567|ref|ZP_08407464.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332038930|gb|EGI75359.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 310 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 15/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + F VARSG F+ A+ L + +++SR+++ LE +G++LF R R + LT+ G Sbjct: 4 FDAITAFVAVARSGGFSAASRALGIPVANVSRKVALLEEALGVRLFVRTTRHVALTDGGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + S V + E+ +P G L I + GQ LQ + EFL YP + + Sbjct: 64 RYFETCSRVIDAMREADEEVSGEYREPKGDLVITAPLGFGQQHLQPVVHEFLRAYPQVNV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL LD++ + + ++ DCA+R+ + SSL+ R+L +I + AAP YL+ PL + Sbjct: 124 QLQLDDRVLPLVEEHVDCALRIGT-LADSSLVARELGSIRLVVCAAPAYLEARGTPLELS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238 L H+ I++ L +W T+ R G+ R + V L S +Q + G Sbjct: 183 ALAVHDGISWTGL----GLHKSWTFTL-RQGGQLREQQVPVPVRLATSTPESALQAAIAG 237 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ Y V + LV ++ + V YP KL+AF +F Sbjct: 238 LGLVQATSYQVAPHVAAGRLVPVLTAHDSEPLPVSLVYPSKRLIPLKLRAFLDF 291 >gi|163744014|ref|ZP_02151382.1| putative transcription regulator protein [Phaeobacter gallaeciensis 2.10] gi|161382702|gb|EDQ07103.1| putative transcription regulator protein [Phaeobacter gallaeciensis 2.10] Length = 305 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 150/292 (51%), Gaps = 21/292 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--H 67 V VA + F AA +L +++S++S++I+ +E +G +LF+R R ++LTE G H Sbjct: 11 VVVAVAETQGFAAAARRLGVTKSAVSKRITQIERRLGAQLFHRSTRNVSLTEAGEHFYAH 70 Query: 68 RVTSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V ++ + E + + LQE+ P G+LR+ + G+ + + FL +P + +++ Sbjct: 71 AVRAQDAAQEAEDSVLALQEA---PKGRLRVNVPMAFGRLHVAPLISTFLARHPGVSMEM 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D++ D+ D D A+R + S+L+ RK+ +H AAP YL+ P ++++L Sbjct: 128 VMDDRVADLFADGFDLALR-GGTLADSALVARKIAPLHNVLVAAPAYLERHGAPEAVRDL 186 Query: 187 DKHNLITFGDLIPKCMED--FNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 HN + + + ++ FN V+ RP G VN+ ++ + + G+GI Sbjct: 187 STHNCLQYS--YSRDFQEWVFNSGGEVETFRPGG-----SYSVNNGDALREAILGGTGIG 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP + + LVR++ PS T+Y YPE K++ F +FI Sbjct: 240 RLPTFSAGPDLATGRLVRVLPQCRLPSQTLYAVYPERRYLPAKVRVFIDFIL 291 >gi|170701385|ref|ZP_02892345.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133694|gb|EDT02062.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 345 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 143/289 (49%), Gaps = 15/289 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66 F VA GSFT AAE+L + + ++SR + LE ++ +LF R R LT +G + Sbjct: 35 AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94 Query: 67 -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H+ +++ + +EL++ P G +RI++ + G+ ++ L++F YPDI I Sbjct: 95 CHQGVAQIVEAM-NDMLELRQG--PPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIVID 151 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD++ ID+ + D + R + I+ SS+I R+L+ + M AAP Y+ P I + Sbjct: 152 LLLDDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIDD 210 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD+H I F + F W VD R S L N +++ + G+GIA + Sbjct: 211 LDQHECINFRSASGRV---FEWEFNVDGRAQKYLPTSRLTFNDADLVLRAVLNGAGIAQM 267 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y ++D + LV + + Y CY +++ F +F+ Sbjct: 268 AGYQIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFM 316 >gi|325496134|gb|EGC93993.1| hypothetical protein ECD227_0231 [Escherichia fergusonii ECD227] Length = 304 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|295675831|ref|YP_003604355.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295435674|gb|ADG14844.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 306 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 7/295 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SFT +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVEAKSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + L P+G +R+ T+ L ++LL L +F YP I + Sbjct: 64 SFYERCVRILADVADAESSLSNKRENPAGTIRVDTSGTLARSLLLPALDDFYEQYPAIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ P + SSL+ +++ + A+P YL+ P+++ Sbjct: 124 RLGLADRNIDLIQDGVDCVIRMGTP-EESSLVAKRIGLARIVTCASPAYLQKFGTPITLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L +H + + + + F + VD I + S L VN + VLG GI Sbjct: 183 DLGEHRAVNY--VSARSGRTFPFEFEVDGEIERVAMDSTLAVNDGSVYITAGVLGHGIIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 ++V + L I+ + +P + Y + +L+AF +++ AR Sbjct: 241 PSRFMVAELIEQGALTEILGNYTSPGTPLSILYAHRRNLSSRLRAFIDWVVELAR 295 >gi|50084813|ref|YP_046323.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49530789|emb|CAG68501.1| putative transcriptional regulator (LysR family) [Acinetobacter sp. ADP1] Length = 305 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 142/295 (48%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 7 MFTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 66 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S+KP G ++++ +D+ QN + L EFL LYP Sbjct: 67 DIGMNIYRHAQVMMNAAQAAHDLVDHLSIKPRGVIKVSVPVDIAQNQMSKLLPEFLKLYP 126 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QL++ N+ +DI + D A+R+R + SL+ R+ I H +A+ YL Sbjct: 127 EIRVQLMISNRRVDIVNEGIDIALRVRSKLDDDPSLVLRQFAQIEQHLFASQAYLNEFGS 186 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238 +L +H ++ D ++ L + + + +++ + ++ L + Q Sbjct: 187 VKIPDDLPQHRFLSLSD---DHLDQQFTLYDQNNQLHKVKVNPVVMASNLLMLAQLASQN 243 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD I D + LVR++ + P + YP G L A R FI Sbjct: 244 CGIALLPDTIACDYIKSGELVRVLPEWKAPHGIFHAVYP---SRRGLLPAVRVFI 295 >gi|330831558|ref|YP_004394510.1| LysR family transcriptional regulator [Aeromonas veronii B565] gi|328806694|gb|AEB51893.1| Transcriptional regulator, LysR family [Aeromonas veronii B565] Length = 301 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 15/299 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F W+ + F VA G FT AA +L +S + +SRQ++ LE + KL R R + LTE Sbjct: 2 FGWEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTEL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +R ++ L ++ + P G LRI + G++ + + +F++ +P + Sbjct: 62 GEIYYRHCRQLLDNLYEAELAVGRHQAVPQGTLRITAPVSYGESRIAPLVNDFMVRFPQL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L N+ +D+ + D A+RL ++ S+L+ RKL + A+P Y P S Sbjct: 122 EVTLNLTNQLLDLVHEGYDLALRLGH-LKDSTLVARKLAQRVPYVCASPAYTARHGIPNS 180 Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + EL +H L+ D W T+D RP LQ NS +++ + G G Sbjct: 181 LSELTRHTCLVGNSD---------EWHFTLDGRPHSVRVRGLLQCNSGHALLDAALKGIG 231 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 I LPDY V D+ L+ ++ ++ P+ ++ YP + K++ +++ + D Sbjct: 232 IIQLPDYYVSDHLARGELIELLPELRAPAEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290 >gi|170728083|ref|YP_001762109.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813430|gb|ACA88014.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 319 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 144/291 (49%), Gaps = 9/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F V +SG F+ AAE L S S +S++++ LE+ +G++L R R + LT +G Sbjct: 26 FDGVVIFTQVVKSGGFSAAAEALGHSTSYVSKEVNKLESRLGVRLLNRTTRSIGLTPEGQ 85 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H+ ++ E + + V P G L+I++ + N L+ L +++L YP++ + Sbjct: 86 AYHQQCLQLVQDAEQAVQLITQHDVSPKGHLKISSPVGFANNYLRPILSQYMLNYPNVNL 145 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L+++ +D+ + D IR + + SSLI RK+ + + A P YL P Q Sbjct: 146 ELDLNDRRVDVISEGYDLVIRASQNLDESSLICRKIYSCKAYTVATPEYLSKHGRPYHPQ 205 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL KHN + + +L K +++ + + NS + G GI L Sbjct: 206 ELAKHNCLCYSNL--KLPTRWHYSDKQGKSFFVDVRQKVLCNSGEMEFAMTLDGLGICRL 263 Query: 245 PDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 P++ ++D ++ +++ P + V+ YP + K++AF + + Sbjct: 264 PEFYLQDTLETGKL--EILFPQYPTTDIDVFVVYPSRKHLSPKVRAFIDLV 312 >gi|94501938|ref|ZP_01308447.1| probable transcriptional regulator, LysR family protein [Oceanobacter sp. RED65] gi|94425932|gb|EAT10931.1| probable transcriptional regulator, LysR family protein [Oceanobacter sp. RED65] Length = 290 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 27/293 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F VA GSFT AA++L S IS+ + LE+ + I+L R R + LTE G+ Sbjct: 5 DTIRAFIAVAAEGSFTKAADRLDTSPQLISKYMGQLESRLNIRLLNRTTRKVQLTEAGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ + + E+ + P G LRI+ + + L+EF LYPDI I Sbjct: 65 YLEQAQDLINRFDAMENEIGDLQTLPQGNLRISAPVSFANLHMGALLREFQSLYPDISID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +DI + D A+R+ + +Q SSLI + + I + A+ YL+ P + + Sbjct: 125 LQLNDRKVDIVEEGYDVALRIGQ-LQDSSLIAKYIAPIQLRICASKDYLQKNGIPKTEAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H +++ A ++ I + + + N+ ++ + + GSGIA+ P Sbjct: 184 LKQHTYLSYS------------YAEQNQSIFKNAKTVITCNNGDILVDHAIAGSGIAMQP 231 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +I + +LV I+E+ + +Y Y A R FI LK R Sbjct: 232 TFICGEALKRGDLVSILENYTPKALGLYAMY-----------AHRKFIPLKVR 273 >gi|221068336|ref|ZP_03544441.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220713359|gb|EED68727.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 322 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 7/293 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D++ L VF VA SFT AA+QL L++S +S + LE ++G +L R R + LT Sbjct: 19 SMDFNALHVFTRVAELSSFTLAADQLGLTKSRVSTVVQQLERQLGTRLLQRTTRHVRLTA 78 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + E+ LE Q Q ++ G LRI L ++++ L EFL +P Sbjct: 79 DGEQFLERSKELMADLEQLQAMFQPATSGLRGSLRIDMPNTLARDVVLPKLPEFLSAHPL 138 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++ + ++ +D+ + DC +R+ P+ + LI R L + M A+P YL+ P Sbjct: 139 LEVGISTSDRRVDVVQEGFDCVVRI-GPLADTDLIARTLGALEMCNLASPAYLERHGTPA 197 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L +H +I + + + + W R +P L VN + C+ G G Sbjct: 198 TLADLSRHRIIHYANQLGR--HGAGWEYQRGRETALQPMRCALVVNGTDAYQAACLAGLG 255 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + P + D LV +M D V YP ++ AF N+I Sbjct: 256 LIQAPVRGARHLLDQGLLVEVMPDFKAAPMPVSLLYPHRRHIAPRVTAFLNWI 308 >gi|299132072|ref|ZP_07025267.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2] gi|298592209|gb|EFI52409.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2] Length = 314 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 145/295 (49%), Gaps = 16/295 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ + +F V SF AA +L LS++++S+ ++ LE +G +LF R +R L LT+ G Sbjct: 6 DFEAMAIFAKVVELRSFAAAASELALSKATVSKAVTRLEERLGARLFNRSSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +++ E + E + P G +R+A + GQ ++ L EFL YPD+ Sbjct: 66 RALSVRAAQLLADGEEAENEALSQAASPRGLVRLAVPMTFGQRVIAPLLPEFLAQYPDVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D +R+ + + SSL+ R+L + ++ AAP YLK P Sbjct: 126 IDLHLSDAMVDLIGEGFDIGVRIAR-LPDSSLVARRLCPMPVYTVAAPSYLKKYGRPTHP 184 Query: 184 QELDKHNLITFG-DLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H T+ P+ FN A RP G+ L++N+ +++ + G G Sbjct: 185 MHLAQHRCFTYAYRTTPEVWHYFNDAGEAVSVRPSGQ-----LRINNGEAVLPALIAGLG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVI-----TPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LPD+I+ + + R +VI P V+ P +++A F+ Sbjct: 240 IADLPDFIIGE--AIARKQVEVILKGWKQPEGAVHLVMPPGGPRPARVEALVEFL 292 >gi|317405599|gb|EFV85900.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 298 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 136/286 (47%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF V G F A+ QL LS +++S+ I+ LE V ++L R R ++LTE G + + Sbjct: 7 LRVFRQVVEQGGFAAASRQLGLSPAAVSKNIAELEAHVAVRLLNRTTRRMSLTEAGRQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L + + +P+G LR++ + L LL + FL +P + + L Sbjct: 67 EQVARILDDLHDADMSMGPLQQEPTGTLRVSAPMSLSLTLLATAMPRFLARHPRLSLDLH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ ID+ + D AIR ++ SSL+ RKL+T+ AP YL+ EP + +L Sbjct: 127 LEDRRIDLIREGFDVAIRGSDRLEESSLVARKLMTLEHVLCGAPAYLRQHGEPQAPADLR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + F F V+R R +VNS L++ G G++L+P Sbjct: 187 RLECVRFTLSGHADEWTFQRAGQVERVQVRGRY---KVNSSLAVRDALRAGLGVSLVPRV 243 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ + L +++ D VY YP K++A +F+ Sbjct: 244 YVQADLEIGALRQVLTDWTPVETDVYVVYPSRRHMVAKVRALVDFL 289 >gi|146281936|ref|YP_001172089.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501] gi|145570141|gb|ABP79247.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501] Length = 299 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 133/281 (47%), Gaps = 25/281 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F V GSF AAE+L +S S +SRQI+ LE + +L YR R ++LTE G Sbjct: 4 WEGLDEFVAVVECGSFMRAAERLRVSSSHVSRQIARLEERLQARLLYRTTRRVSLTEAGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + + P+G LR+ + G+ + + EF+ +P +++ Sbjct: 64 TFFARCQRLIEERDDAFLAISDLHSAPTGLLRMTAAVAYGERFIVPLVNEFMARHPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL K + S L+ ++ M+ AAP YL+ P ++ Sbjct: 124 DIELSNRTLDLVQEGYDLAIRLGK-LGESRLVAARIAPRAMYLCAAPGYLERYGRPHTLS 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVL 237 EL +HN LI D+ W D +P G R NS +++ + Sbjct: 183 ELARHNCLIGTSDV---------WSFQSDGREQHFKPSGNWR-----CNSGQAVLDAALR 228 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G G+ LPDY V + LV ++E P V+ YP+ Sbjct: 229 GFGLCQLPDYYVLEPLRRGELVSLLEANQPPDTAVWAVYPQ 269 >gi|323528454|ref|YP_004230606.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385456|gb|ADX57546.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 334 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP GKLRI +G+ L+ L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPQLCEFHKRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ AAP Y++ P S+++LD Sbjct: 127 LSDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPEYIQRAGMPTSLEDLD 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + + +W VD E ++ S + VN + + + G G+ Sbjct: 186 NHKAVNY--FSSRTGRTIDWAFLVDGKEVEVKMKSIVSVNDADAYVTCGLEGFGLIQPAL 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + LV ++ ++ + YP + + K++ F ++I Sbjct: 244 FMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWI 290 >gi|91209276|ref|YP_539262.1| putative LysR-type transcriptional regulator [Escherichia coli UTI89] gi|117622490|ref|YP_851403.1| putative transcriptional regulator LYSR-type [Escherichia coli APEC O1] gi|218557144|ref|YP_002390057.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|218688078|ref|YP_002396290.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|237707798|ref|ZP_04538279.1| transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|306813372|ref|ZP_07447565.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|91070850|gb|ABE05731.1| putative transcriptional regulator LYSR-type [Escherichia coli UTI89] gi|115511614|gb|ABI99688.1| putative transcriptional regulator LYSR-type [Escherichia coli APEC O1] gi|218363913|emb|CAR01578.1| putative DNA-binding transcriptional regulator [Escherichia coli S88] gi|218425642|emb|CAR06429.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|222032033|emb|CAP74772.1| Uncharacterized HTH-type transcriptional regulator [Escherichia coli LF82] gi|226899008|gb|EEH85267.1| transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|294489865|gb|ADE88621.1| transcriptional regulator, LysR family [Escherichia coli IHE3034] gi|305854135|gb|EFM54574.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|307628311|gb|ADN72615.1| putative DNA-binding transcriptional regulator [Escherichia coli UM146] gi|312944811|gb|ADR25638.1| putative DNA-binding transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|315289708|gb|EFU49101.1| LysR substrate binding domain protein [Escherichia coli MS 110-3] gi|323948758|gb|EGB44658.1| LysR substrate binding domain-containing protein [Escherichia coli H252] gi|323958792|gb|EGB54491.1| LysR substrate binding domain-containing protein [Escherichia coli H263] Length = 304 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 E+G + HRV S + ++ + E+ E+ P G LRI + + L +K F Y Sbjct: 61 EEGERYFHRVQS-ILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P++ + L+ I++ D AIR + SSL R L + A+P Y+ + Sbjct: 120 PEVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISCYGK 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G Sbjct: 179 PETIDDLKQHICLRFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|53721469|ref|YP_110454.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76817347|ref|YP_337126.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|126457173|ref|YP_001074619.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167818674|ref|ZP_02450354.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167848545|ref|ZP_02474053.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|237510359|ref|ZP_04523074.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242313778|ref|ZP_04812795.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254185351|ref|ZP_04891939.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254187230|ref|ZP_04893744.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254198845|ref|ZP_04905263.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254264514|ref|ZP_04955379.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254296770|ref|ZP_04964224.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|52211883|emb|CAH37887.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76581820|gb|ABA51294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] gi|126230941|gb|ABN94354.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|157806631|gb|EDO83801.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157934912|gb|EDO90582.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|169657017|gb|EDS88411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|184209586|gb|EDU06629.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|235002564|gb|EEP51988.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242137017|gb|EES23420.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254215516|gb|EET04901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 299 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 16/299 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D LR+F +GSFT AA++L LS+ +SR++ LE +G++L R+ R L +TE G Sbjct: 3 FDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGH 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +LH + + + T+ + G L+I+ + G L + EFL+ +P +++ Sbjct: 63 ELHARATRILADIAETEEAMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAVRL 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ +D+ + D A+R+ + S+LI R+L + M A +P Y + P + Sbjct: 123 HVELSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHGAPATPA 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L + +G W +D G R L N+ + V G G Sbjct: 182 DLHGRACLLYGQ-----EGRTGWEFMID---GARRTFEVQGALLANNGDVVRDAAVAGLG 233 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IALLP +IV D LV ++E + YP+ ++ + F FI + R+ Sbjct: 234 IALLPHFIVAHALDAGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRE 292 >gi|83648931|ref|YP_437366.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636974|gb|ABC32941.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 299 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 144/288 (50%), Gaps = 5/288 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+VF VA +GSFT AA+ L +S++S + LE +G +L +R R ++LT G+ Sbjct: 5 DALQVFARVAETGSFTRAADLCELPRSTVSSVVQKLEASLGARLLHRTTRRVSLTHDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E + +E + SGKL++ G ++ L +F YP+I+++ Sbjct: 65 LLERCRHLLTEIEEIESMFREPGARVSGKLKVDVPSRFGSRVIAPALPDFFERYPEIELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC +R+ P S+SL+ R L + + A+P YL P + + Sbjct: 125 LGATDRTVDLIQEGVDCVVRVGDP-GSASLVARPLGKMELVNCASPAYLARYGAPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + F E + ++ + E R S + VN+ + + + G G+ P Sbjct: 184 LSEHRAVRFASPNTGRAEPWEYVQDGELHYVEMR-SWVTVNNAETYVACALAGMGLLQAP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +Y V+ + +LV ++ + + +Y YP + + +++ F +++ Sbjct: 243 EYDVRHLLQSGDLVEVLPNARAEAMQIYAMYPHRRQLSRRVRVFIDWV 290 >gi|182677173|ref|YP_001831319.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633056|gb|ACB93830.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 298 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 8/291 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 FDW+ LR F VAR+G+ + AA +L + +++ R+I GLE +G K+F R+ RG +T+ Sbjct: 4 GFDWNDLRFFLAVARAGTVSLAARRLGVDHATVIRRIDGLEHALGAKIFERNPRGYNVTQ 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G KL + + + + EL S SG +RI++ G L L F +P+ Sbjct: 64 KGEKLLASAQMIESEAQKAEQELAGSHQTVSGLVRISSLEGFGNFFLASRLPRFTANHPN 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ + + +S AD AI L+ P ++ ++ +L + Y + YL N + Sbjct: 124 ITLELLNIQQIVALSRREADLAITLQPP-ETGRFVRERLTDYMLFVYGSRAYLDNAKPIR 182 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + ++ H + DL+ ++L V +P RI Q +S + M+ G G Sbjct: 183 TREDFIDHPFSGYIDDLV--FTRGLDYLHEV-KPGLRARI---QSSSLHAQMEAACAGFG 236 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + +LP +I P LV ++ + + + + +++A R+FIF Sbjct: 237 LCILPAFIAAHRPELVPVLPQEVALKRSYWLVADADAAMSSRIRAVRHFIF 287 >gi|146307045|ref|YP_001187510.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575246|gb|ABP84778.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 308 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ I LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTQAAATLHMSKTSVTQLIQQLEARLRVRLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +++ P G+LR+ L + LL L F YP+IQ+ Sbjct: 64 AYYERVVRLLADMDDAETSLSSAALAPRGRLRVDVPSPLARMLLIPALPAFYERYPEIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +DI + DC +R + I SL+ R + + + YA P YL+ P + Sbjct: 124 TMGVSDRIVDIIGENVDCVVRGGE-ITDQSLVARHIGDLQLGIYATPGYLQRAGTPGHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL + H+ + F G +P M+ G P ++ N+YL+ + Sbjct: 183 ELGEGAHSTVGFLWSRTGKALPYAMQRGEERIEAQ---GRPLLTVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP Y+ + + LVR+ +D +Y +P + KL+ F +++ Sbjct: 237 GLGMLWLPHYMARPHLASGELVRLFDDWQMTPMPMYLAFPPNRHVSAKLRVFIDWV 292 >gi|78061145|ref|YP_371053.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969030|gb|ABB10409.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 334 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 106/187 (56%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I +L+ Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVTVASPDYLERHGEPQTIDDLN 185 Query: 188 KHNLITF 194 +H + + Sbjct: 186 QHKAVNY 192 >gi|193067760|ref|ZP_03048727.1| transcriptional regulator, LysR family [Escherichia coli E110019] gi|192959172|gb|EDV89608.1| transcriptional regulator, LysR family [Escherichia coli E110019] Length = 304 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + L +K F YP Sbjct: 61 EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLYFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|260770243|ref|ZP_05879176.1| transcriptional regulator LysR family protein [Vibrio furnissii CIP 102972] gi|260615581|gb|EEX40767.1| transcriptional regulator LysR family protein [Vibrio furnissii CIP 102972] Length = 292 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 142/303 (46%), Gaps = 25/303 (8%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V GSF AAE+L +S S+ IS LE ++G++L R R L +TE G + Sbjct: 1 MFVAVMELGSFAKAAERLAISSGQASKLISRLEQDLGVQLVKRSTRSLAVTEVGQAYYER 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V L+ ++ +S PSG+LRI+ + GQ+ L +L +F +PDI + + Sbjct: 61 IKRVLDDLDALDDAIRNASRLPSGRLRISAPVTFGQSQLAPSLIDFSKQFPDITLDVKFS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +++ + D A+R+ K + SSLI RKL + + A+PHYL P I++L +H Sbjct: 121 DRSVNVVDEGFDLALRIGK-LDDSSLIARKLCDVRVITLASPHYLSQHGTPTHIRDLAQH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYL--SIMQYCVLGS----GI 241 + C+ D N+ P + + VN L S + C+ + GI Sbjct: 180 H----------CIIDTNFRDPYHWPYLNEQGHVHDFAVNGRLKFSNAEVCLKAACADLGI 229 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295 LP ++ LV I++ P +Y YP A +AF +F+ F Sbjct: 230 TRLPTFVAAQALKEQQLVAILQQYEVPPLGLYALYPPAKHLAQSSRAFIDFLVNRFANGA 289 Query: 296 DWK 298 DW+ Sbjct: 290 DWE 292 >gi|299066042|emb|CBJ37223.1| Transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 294 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 6/257 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F VAR+ + AA++L + Q+++ R+I+ LE E+ KLF R + L LT Sbjct: 1 MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLVLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + H T + + + + +G +R+ATT L + + + L +P I Sbjct: 61 GEALIGPAETMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + +++ AD A+R +P + LI R++ TI YA+ Y++ EP+ Sbjct: 121 DIVCLAAKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASHGYVRARGEPVE 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+L+ L P+ + W A P+ R+ LQ +S ++I + V G G++ Sbjct: 180 GTAFAGHDLV----LYPRSEVPWMWEALCGEPVTPSRV-VLQSSSVMTIFEAVVAGIGVS 234 Query: 243 LLPDYIVKDNPNLVRIM 259 L +P LVR++ Sbjct: 235 ELVCCRADAHPELVRVL 251 >gi|271499563|ref|YP_003332588.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270343118|gb|ACZ75883.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 303 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 149/287 (51%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + + LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKSVVRLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL +++ P G+LR+ ++ L +L+ L EF+ YP+I++ L Sbjct: 69 SRRILAEIEAAELELSQATAAPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P S L R+L T M A+P YL P+ +L +H Sbjct: 127 DRMVDVVEEGFDAVVRTGEP-ADSRLSARRLGTFEMQLVASPDYLARRGTPMLPADLRQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPR---ISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + + P + NW + + GEP + + N+ + + + + G GIA LPD Sbjct: 186 SCLHY--RWPNSGKLENW--ALRQTPGEPEWQLPTSMICNNIETRVCFALQGLGIAYLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ + L I+ + + S + +P + + K++A +F+ Sbjct: 242 FAIREPLADGRLKPILAEYVQHSGVFHVLWPASKHPSPKVRALVDFL 288 >gi|212636847|ref|YP_002313372.1| LysR family transcriptional regulator [Shewanella piezotolerans WP3] gi|212558331|gb|ACJ30785.1| Transcriptional regulator, LysR family [Shewanella piezotolerans WP3] Length = 296 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 11/288 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F V +SG F+ AA+ L S S +S++++ LE +G++L R R + LT +G Sbjct: 5 FDGVVIFAQVVKSGGFSAAADALGHSTSYVSKEVNKLEARLGVRLLNRTTRSIGLTPEGD 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E + + V P G L+++ I Q L+ + E+L LYP++ + Sbjct: 65 AYYQQCLQLISDAELAVGLITQHDVSPKGVLKLSCPIGFAQTHLKAIISEYLQLYPNVSL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L + D+ D D AIR + SSLI RKL + A+ Y+ +P + Sbjct: 125 ELDLSDNRTDVIADGYDLAIRASSQLDESSLICRKLYSCGAFTVASKAYISRHGKPYHPR 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGI 241 EL HN I + +L K ++++ +P P++ C + L++ + G G+ Sbjct: 185 ELATHNGICYSNL--KTPSRWDYVDKDGKPFSVDVRPKVLCNNGHMQLAMT---LEGHGV 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A LP + +++ + L + ED T + V+ YP + K++AF Sbjct: 240 ARLPLFYMQEALQDNQLQVLFEDFPTTTVDVFVIYPSRKHLSPKVRAF 287 >gi|170695173|ref|ZP_02886321.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170140025|gb|EDT08205.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 322 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 140/290 (48%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L L +SS+S I LE +G +L +R R ++ T+ G+ Sbjct: 21 DLFRVFARVVECANFTRAADTLGLPRSSVSAAIQELEGRIGARLLHRTTRKVSPTQDGAA 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ +++SV P G LRI +G+ ++ L EFL YP I I Sbjct: 81 LYERCLRLIADVEETENLFRQTSVGPGGVLRIDVPGRIGRLIIAPALPEFLASYPRIDIT 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ID+ + DC +R+ KP S +I R + + + A+P YL P + + Sbjct: 141 LSLTDRTIDLIEERVDCVLRVGKP-HESGMIARPMGDLPLINVASPIYLSQHGRPCTPGD 199 Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + ++ + + + WL TV + R++ VNS + + C+ G G+ Sbjct: 200 MTNQQVVQYASPTSGRIAPWEWLDGETVRTLTTQGRVT---VNSAEAYIACCLAGLGLIQ 256 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V+ + L+ +M + + YP + +++ F +++ Sbjct: 257 IPAYDVQQHLRAGELIEVMPEYRAAPMPMNLLYPHRQHLSRRVQVFADWL 306 >gi|209549780|ref|YP_002281697.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535536|gb|ACI55471.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 304 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 148/300 (49%), Gaps = 19/300 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V +GSFT AA L + ++++SR+I+ LE E+G++L R R L+ T+ Sbjct: 2 LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSPTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +S+ +E + L E+ +P+G +RI+ + G + LQ + + L YP Sbjct: 62 GRLYYEESSQALRAIEGANLRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L + +++ + D A R ++ S+LI RKL + H A+P YL C P Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARCGAPDR 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 +L +H+ + G WL ++ P G+ +S N ++M + G Sbjct: 181 PADLVRHDCVVAGQ-----STHAQWL--LEGPHGQETVSVSGRFAANEMQAVMAAAIAGY 233 Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIA LP + ++D L R+++ TP ++ YP + +K FI L AR Sbjct: 234 GIARLPHGVANTCIRDG-RLCRVLDGYTTPVGGLHVVYPSSRHLPPLVK---TFIELAAR 289 >gi|330503614|ref|YP_004380483.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917900|gb|AEB58731.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 306 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +S+ P G+LR+ + LL L F YP+IQ+ Sbjct: 64 AYYERVVRLLADVDDAETSLSSASLVPRGRLRVDVPSPFARMLLIPALPAFYARYPEIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC +R + I SLI R + + + YA P YL+ P + Sbjct: 124 TLGVSDRIVDVIGENVDCVVRGGE-IIDQSLIARHVGDLQLGIYATPSYLQGAGTPTHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H+ + F G +P M + G PR+ N+YL+ + Sbjct: 183 ELEATGHSTVGFLWSRTGKALPYAMRCGDECIEAH---GRPRLIVDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP Y+ K + LVR+ E+ +Y +P + KL+ F +++ Sbjct: 237 GLGMLWLPHYMAKPHLASGELVRLFENWQMTPMPMYLAFPPNRHVSAKLRVFIDWV 292 >gi|206561887|ref|YP_002232650.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198037927|emb|CAR53872.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 307 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 147/290 (50%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++I+ LE ++G +L +R R +T+TE G + Sbjct: 8 DDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLEAQLGTRLLHRSTRRMTVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LR++++ G++++ L +F YP + ++ Sbjct: 68 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRLSSSFGFGRHVVAPALLDFSARYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L T H A+P YL P S+ + Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRSLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H+ + I + F W TV ++ L N +Q+ + G GI L Sbjct: 187 LASHDCLA----IKERDHPFGVWRLTVRGETATVKVGGALSTNHGEVAVQWALAGRGIVL 242 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + L R++ D + P+ ++ YPE + + K++ +F+ Sbjct: 243 RSIWEAGPLIERGALCRVLPDALQPA-NIWAVYPERVAASAKVRVCVDFL 291 >gi|126727891|ref|ZP_01743719.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] gi|126702832|gb|EBA01937.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] Length = 296 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 12/293 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+K R F V A GS + AA L ++Q ++ RQ+ GLE E+GI LF R RGL LT Sbjct: 6 VKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLRLT 65 Query: 61 EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G +L R E ++ T + Q +++ GK+ I+ + LL + + L Sbjct: 66 PSGLELLDHVRDMGEAAGRVSLTALG-QSQAIE--GKICISASETYAAVLLPPIIAKLRL 122 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 P I++++++ N D+ AD AIR +P + L+ +KL YA P Y++ Sbjct: 123 QEPGIKVEIVVANHASDLRRREADIAIRNFRPTE-PDLVAKKLGDAEAVLYATPEYIEKI 181 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +L + + F DL M L T+ + + L N YL + + Sbjct: 182 GNPTKPSDLQRAD---FVDLDAGGMM-IKGLNTLGLGVTKANFPILTEN-YLVMWELVRQ 236 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+ +L YI +P +VRI+ D+ F ++ L + +++ +F+ Sbjct: 237 GAGVGILDAYIGDADPTVVRILPDLPPLVFPIWLVAHRELTTSRRIRMVYDFL 289 >gi|225626606|ref|ZP_03784645.1| LysR family transcriptional regulator [Brucella ceti str. Cudo] gi|256158753|ref|ZP_05456623.1| transcriptional regulatory protein [Brucella ceti M490/95/1] gi|256254145|ref|ZP_05459681.1| transcriptional regulatory protein [Brucella ceti B1/94] gi|260169643|ref|ZP_05756454.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99] gi|261221290|ref|ZP_05935571.1| transcriptional regulator [Brucella ceti B1/94] gi|261759175|ref|ZP_06002884.1| bacterial regulatory protein LysR [Brucella sp. F5/99] gi|265997251|ref|ZP_06109808.1| transcriptional regulator [Brucella ceti M490/95/1] gi|225618263|gb|EEH15306.1| LysR family transcriptional regulator [Brucella ceti str. Cudo] gi|260919874|gb|EEX86527.1| transcriptional regulator [Brucella ceti B1/94] gi|261739159|gb|EEY27155.1| bacterial regulatory protein LysR [Brucella sp. F5/99] gi|262551719|gb|EEZ07709.1| transcriptional regulator [Brucella ceti M490/95/1] Length = 297 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWCKTFAGYHLYYPNRRQHPPALAAL 289 >gi|158423675|ref|YP_001524967.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330564|dbj|BAF88049.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 315 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 138/287 (48%), Gaps = 10/287 (3%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V +GSF+ AAE+L S S+ +S LETE+G++L R R L+ TE G + Sbjct: 20 RMFVAVLDTGSFSAAAERLGTSSGQASKLVSRLETELGVQLLKRTTRALSPTEVGQAYYE 79 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + E ++ +S P+G+LR++ + G L L +F +P IQ+ + Sbjct: 80 RIKPLLDEFEALDASVRNASGAPAGRLRLSAPMSFGHIQLMPLLLDFARAFPQIQLNVSF 139 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +++ + D AIR+ P + SSLI RKL + A+P YL + P + Q+L + Sbjct: 140 SDRLVNVVDEGFDAAIRIGSP-RDSSLIARKLCDSQIMWLASPAYLASHGTPQTPQDLVR 198 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGIALLPD 246 H I D P E W +G+ ++ +S + + G GIA +P Sbjct: 199 HACI-IDDNFP---EPLVWRFQTPDGVGDAVTVSGRMRFSSGEACLAAAEAGLGIARMPT 254 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I +V + D++ P+ VY YP K++A +F+ Sbjct: 255 FIAGPKLKAGTVVPLFRDLMPPARGVYALYPPGRHLAVKVRALVDFL 301 >gi|207742660|ref|YP_002259052.1| transcriptional regulator protein [Ralstonia solanacearum IPO1609] gi|206594054|emb|CAQ60981.1| transcriptional regulator protein [Ralstonia solanacearum IPO1609] Length = 294 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 19/295 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F VAR+ + AA++L + Q+++ R+I+ LE E+ KLF R + L LT Sbjct: 1 MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + H T + + + + +G +R+ATT L + + + L +P I Sbjct: 61 GEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + +++ AD A+R +P + LI R++ TI YA+ YL+ EP+ Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+L+ L P+ + W A P+ R+ LQ +S ++I + + G GI+ Sbjct: 180 GSAFAGHDLV----LYPRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGIS 234 Query: 243 LLPDYIVKDNPNLVRI------MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 L + LVR+ M+D V+ L T +++A N I Sbjct: 235 ELVCCRADPHSELVRVLPHRRRMQD-------VWLVTHADLHKTARVRALMNCIV 282 >gi|90420616|ref|ZP_01228523.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans SI85-9A1] gi|90335344|gb|EAS49097.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans SI85-9A1] Length = 295 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 31/300 (10%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G AA +L L+ +++ R+++ LET +G +L R G LT Sbjct: 1 MNWDDVRLFLAVARAGQILAAARRLELNHATVGRRLTALETALGARLLDRRPNGCELTPT 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + SG +R+ T G L L +PD+ Sbjct: 61 GRDFLEQAERMEAAMLAARADIGATELALSGTVRVGTPDGFGTAFLAPRLWRLTERHPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL+ + IS AD AI + +P ++ L+ KL + YA+ Y+ P S Sbjct: 121 TVQLVPVPRAFSISRREADIAITVARP-EAGRLVAGKLTDYALGLYASRGYIAAHGAPAS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----------LQVNSYLSI 231 + EL +H L+ +ED + PR++ +V+S + Sbjct: 180 LAELGRHRLV-------GAVEDLLY---------SPRLAYHTDIVARWPAHYEVSSAIGQ 223 Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L ++ D P L RI+ E+ I S+ + Y E++++ ++ A +FI Sbjct: 224 TEAVAAGAGIGILHGFMAADRPQLTRILPEETIHRSY--WLVYHESVRDIRRIAAVADFI 281 >gi|262173801|ref|ZP_06041478.1| transcriptional regulator LysR family [Vibrio mimicus MB-451] gi|261891159|gb|EEY37146.1| transcriptional regulator LysR family [Vibrio mimicus MB-451] Length = 304 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 148/286 (51%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V GSF+ AA++L +++S++S+++S LE ++GI+L R R L+LTE G + + Sbjct: 10 VFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGERYYYH 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S+ + + E +P GKL+I + G + + +F+ +YP ++I L L+ Sbjct: 70 VSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEIDLQLE 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D AIR+ + +S+L+ ++LVT A+P YL EP +L +H Sbjct: 130 DQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCQSVLCASPEYLTRHGEPEKPADLLEH 188 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N + + FN + I P+ L VN+ +I + + G GIA LP ++V Sbjct: 189 NCLVYSYFRGGSEWTFNHQQQEVKVI--PK-GNLTVNNSEAIRRALLAGLGIAQLPTFLV 245 Query: 250 KDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +LVR +M P VY +PE K++AF +F+ Sbjct: 246 --SKDLVRGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289 >gi|258622673|ref|ZP_05717693.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258626675|ref|ZP_05721500.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581026|gb|EEW05950.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258585050|gb|EEW09779.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 304 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 145/284 (51%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V GSF+ AA++L +++S++S+++S LE ++GI+L R R L+LTE G + + Sbjct: 10 VFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGERYYYH 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S+ + + E +P GKL+I + G + + +F+ +YP ++I L L+ Sbjct: 70 VSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEIDLQLE 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D AIR+ + +S+L+ ++LVT A+P YL EP +L +H Sbjct: 130 DQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCQSVLCASPEYLTRHGEPEKPADLLEH 188 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N + + FN + I P+ L VN+ +I + + G GIA LP ++V Sbjct: 189 NCLVYSYFRGGSEWTFNHQQQEVKVI--PK-GNLTVNNSEAIRRALLAGLGIAQLPTFLV 245 Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L +M P VY +PE K++AF +F+ Sbjct: 246 SKDLARGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289 >gi|237800167|ref|ZP_04588628.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023024|gb|EGI03081.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA G FT AA +L +S S +SRQI LE + +L YR R + LTE G Sbjct: 6 WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + + + +P G LR+ + G+ + + F+ LYP +++ Sbjct: 66 TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPQLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + +Q S ++ ++ M+ A+P Y++ P S+ Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRIAPRKMYVCASPSYIERYGRPHSLS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +HN + G D L R + + NS +++ + G G+ L Sbjct: 185 ELGRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGIGLCQL 237 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V+ + LV +++ P+ V+ YP+ + K++ +++ Sbjct: 238 PDYYVQRHLKDGTLVSLLDTHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286 >gi|332341536|gb|AEE54870.1| transcriptional regulator YafC [Escherichia coli UMNK88] Length = 304 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-STLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE----AASLNTWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|162453701|ref|YP_001616068.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161164283|emb|CAN95588.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 312 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 6/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++ F VA GSFT AAEQL + +S++SR ++ LE + ++L R R + LTE G + Sbjct: 19 DEIAAFARVAELGSFTAAAEQLGVPKSTVSRAVTRLEDGLQVRLLQRSPRAVALTEAGRR 78 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L L +P G +R++ D G++ L L EF YP + ++ Sbjct: 79 FFGDVAPHIAGLRDAAQALDAYQGQPQGTIRLSAPPDGGESFLGEMLVEFGARYPLLSLE 138 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + + +D+ + D A+R + + SSL+ RKL+ ++ +AAP YL P + +E Sbjct: 139 VDMSTRRVDLLREGFDVALRATRELPDSSLVVRKLLDSYVQLFAAPAYLARRGLPRAFEE 198 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + F + + + V + RI+ + + I G GI LP Sbjct: 199 LADHERVVFLPDARRGQQPVDGPRAVRDAMATGRIAT---DDFQLIRSLLRAGGGIGPLP 255 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + + LV ++ + + T+Y YP A + FR+F+ Sbjct: 256 RVLAAPELASGRLVHVLPEWSQRAGTLYLVYPSARHVPRNVAVFRDFVL 304 >gi|160900571|ref|YP_001566153.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366155|gb|ABX37768.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 304 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 12/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L L + ++++QI LE V +KL R R +T+T G+ + Sbjct: 7 MRVFVRVVEAGNFTRAADSLDLPKGTVTKQIQALEARVRVKLLNRTTRRVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + + + PSG+LR+ + + ++ L EF YPDIQI L Sbjct: 67 ERAARLLNDFDDLEASMVNTQTAPSGRLRLDVGSSMARLIIIPALTEFCERYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ +++ A+P YL P ELD Sbjct: 127 VGDRLVDLISDNVDCVIRGGE-LSDQSLVARRIGSMNWVTVASPAYLARHGVPQHPSELD 185 Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIAL 243 KH ++ F + M + D I G RI+ N+Y + + + G GIA Sbjct: 186 TKHQIVAFFSGHTRRMYPLEFQRG-DESIEVAGNYRIAANDSNAYTAAV---LAGFGIAQ 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 L + D+ LV ++ + P ++ YP + K++AF Sbjct: 242 LVTAFAQPLIDSGELVEVLPEWTQPPLPIHVVYPPNRHLSAKVRAF 287 >gi|116050880|ref|YP_790297.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115586101|gb|ABJ12116.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 297 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 151/296 (51%), Gaps = 10/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA +GSFT AA+ L + ++++S + LE ++G +L +R R + LT GS Sbjct: 5 DSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + ++ S + SG+L++ + + L+ L EF +PDI+++ Sbjct: 65 VLERCRHLLEDMEELESLFRDGS-RASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC +R+ + + +SSL+ R+L + + A+P YL+ EP + + Sbjct: 124 LGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD+H + + P W D R + S + VN+ S + C+ G G+ + Sbjct: 183 LDRHWAVNYAS--PSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQI 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 P Y V+++ L ++ + Y YP + +++AF +++ L+AR Sbjct: 241 PAYDVREHLQRGELCEVLPHWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296 >gi|127511402|ref|YP_001092599.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126636697|gb|ABO22340.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 314 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 141/280 (50%), Gaps = 23/280 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA+ L++ +S++SR++ LE E+ +KLF+R +R +TLT GS Sbjct: 4 EDIALFHRIVETGSLVEAADILNVPKSTLSRRLQTLEDELNVKLFHRQSRAMTLTASGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T+ + LE T EL +G LRI + + EF+ L P + ++ Sbjct: 64 FYNKTTPLLATLEQTFSELSGKEAAVTGHLRILIFPIPELLYITQAIFEFMDLNPALTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+ ++ D+ + D A L + ++ R +++ +H +A+P YL+ +P +E Sbjct: 124 IIVSSEPKDMIRNNIDLAFMLEDAFNENEMVARHIISEFVHFFASPEYLERAGKPTKPEE 183 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237 L +HN I F G + FN + P G+ RI L VNS + ++ ++ Sbjct: 184 LPEHNSILFRYPNGRI-------FNEV-----PFGKDRILSVTGNLCVNSLSTCLEAALM 231 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 G GIA++P I + +N LV + ED+ + YP Sbjct: 232 GRGIAMMPLPIAREYVENGKLVMLFEDIEPYEGKCFLVYP 271 >gi|89092571|ref|ZP_01165524.1| transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] gi|89083083|gb|EAR62302.1| transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] Length = 294 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 138/277 (49%), Gaps = 18/277 (6%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR +F +A GSFT AE+L LS+S +S++IS LE EVG +L +R R L LT Sbjct: 2 DKLRAMSLFIRLAERGSFTEVAEELGLSKSMVSKEISRLEAEVGARLIHRSTRSLQLTTI 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G R ++ +++ + +Q + P GKL+I + LG + L +F+ YP+I Sbjct: 62 GEGYLRHCHDILERIDDAESFVQGAQDLPRGKLKINAPMALGISHLSQVFSDFMREYPEI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + LD+ +D+ + D R S + + L+ A+ YLK + Sbjct: 122 ELDIHLDDAPVDLIENGFDLGFRAASRPFDSGYVGKPLMDFSYSVCASAEYLKEQGPITT 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC-LQVNSYLSIMQYCVLGSG 240 ++EL +HN + + + W P+GE ++ L+VNS ++ G G Sbjct: 182 VEELSEHNCFIYSYFRGQDI----W------PLGEGVKVGGNLRVNSTPFMLDVVKNGLG 231 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 I +PD+I ++ +V ++++V P T+Y YP Sbjct: 232 IGFIPDFIAGNSIREGQVVELLKNVARPRLTLYAMYP 268 >gi|28898958|ref|NP_798563.1| transcription regulator LysR [Vibrio parahaemolyticus RIMD 2210633] gi|153838692|ref|ZP_01991359.1| AphB/LysR family [Vibrio parahaemolyticus AQ3810] gi|260365294|ref|ZP_05777851.1| AphB/LysR family [Vibrio parahaemolyticus K5030] gi|260878844|ref|ZP_05891199.1| AphB/LysR family [Vibrio parahaemolyticus AN-5034] gi|260896234|ref|ZP_05904730.1| AphB/LysR family [Vibrio parahaemolyticus Peru-466] gi|260899997|ref|ZP_05908392.1| AphB/LysR family [Vibrio parahaemolyticus AQ4037] gi|28807177|dbj|BAC60447.1| AphB/LysR family [Vibrio parahaemolyticus RIMD 2210633] gi|149747912|gb|EDM58784.1| AphB/LysR family [Vibrio parahaemolyticus AQ3810] gi|308088840|gb|EFO38535.1| AphB/LysR family [Vibrio parahaemolyticus Peru-466] gi|308094250|gb|EFO43945.1| AphB/LysR family [Vibrio parahaemolyticus AN-5034] gi|308107435|gb|EFO44975.1| AphB/LysR family [Vibrio parahaemolyticus AQ4037] gi|308115403|gb|EFO52943.1| AphB/LysR family [Vibrio parahaemolyticus K5030] gi|328474502|gb|EGF45307.1| LysR family transcriptional regulator, transcriptional activator AphB [Vibrio parahaemolyticus 10329] Length = 291 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L +T E+ + SGK++I+ +L + ++ +F+ YPDI I+ Sbjct: 64 FYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNDFMKKYPDINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +N + D R+ P + SSLI RK+ + A+ YL P +E Sbjct: 124 LTTENNADQLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASQDYLAANPAPNHAEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+L+ LI + + + V+ G Q N+ + C G GI L+P Sbjct: 183 LSNHSLLKGYPLIKWTLINSKGESVVNVERGR-----FQANALNVVRSACSEGLGITLMP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K ++ L+R++ D +Y Y K++ F +F+ Sbjct: 238 DVMIKEYIESGELLRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|295680770|ref|YP_003609344.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440665|gb|ADG19833.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 325 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 137/296 (46%), Gaps = 10/296 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + + V VA SGSF AAE L +S S +SR IS LE ++G++L R R Sbjct: 1 MTFDGRLFAGITVLAAVAESGSFVRAAEALGVSPSGVSRAISRLEKQIGVRLLDRTTRSQ 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G +L+ S +E S+ GKLR+ + +L L L Sbjct: 61 TLTDEGRRLYETVSPHLVGIECAASTASGSAGVVQGKLRVNVDPFFSRTVLASKLPALLQ 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P++ ++LI+ + D+ D D AIR P +L+ RKL+ + A+P YL++ Sbjct: 121 QFPELSVELIMRDDVGDLVADGFDLAIRFGPP-PVGTLVARKLLEARIITVASPAYLESN 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P ++ H I F + P F W +G P L V+ +++ CV Sbjct: 180 GRPNCPDDVVDHERILFYN--PLSGRPFEWEFHRGKEVVGIPVYGRLLVSDVGTMLNACV 237 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+GIA + + +LV + D F +Y YP K++AF +F Sbjct: 238 AGAGIAQVMSIGTETLIAQQDLVDLFPDWPDERFPLYALYPSRRHLAAKVQAFISF 293 >gi|307725778|ref|YP_003908991.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307586303|gb|ADN59700.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 296 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 144/289 (49%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + +FT AA ++ LS+ +SR++ LE +G+ L R+ R L +TE G + Sbjct: 4 DDMRIFVATVDAHNFTAAARRMSLSKQFVSRRVMALEEALGVPLLVRNTRKLAVTELGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + + P G LR++ + G L + +FL + D++ Sbjct: 64 FYERARRILSEVEEAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVADFLREHRDVRFD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R+ + S+LI +KLV ++ A +P YL+ +P + + Sbjct: 124 MELSDRTVDVVGEGFDMAVRI-GVLPDSTLIAQKLVDVNFVACCSPGYLRRRGKPATPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H+ + +G W V+ + + L+ N+ I V G GI L Sbjct: 183 LAGHSCLLYGH-----GGVVTWEFAVNGAMKSFEVHGPLRANNGDLIRDAAVAGLGIVRL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV + + LV +++D + S VY YP+ +++ ++AF +F+ Sbjct: 238 PHFIVANALRDGQLVTVLDDFMPGSIGVYAVYPQHRQSSLTIRAFVDFL 286 >gi|220916849|ref|YP_002492153.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219954703|gb|ACL65087.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 335 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 139/298 (46%), Gaps = 24/298 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+ V +G T AA +L L +S++SR+++ LE +G++L R+AR L LTE G Sbjct: 9 DDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAGRA 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + + + E E+ P G LRIAT LG+ LL + E LL +P + ++ Sbjct: 69 YHARAARLVAEARALDRETAEARGAPQGTLRIATPALLGE-LLAPAVAELLLRHPRLGVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-- 183 L L +D+ + D A+R P+ SSL+ R+L T+ YA+P YL P + Sbjct: 128 LALAPPHVDLLAEEHDLALRT-GPLADSSLVARRLGTLRTGCYASPAYLARRGTPATPDA 186 Query: 184 --QELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYC 235 E + H+ I L+ + D W A RP G L+V S + Sbjct: 187 LRDEAEAHDCI----LLAEAGTDEIWFFGAGATARTVRPAGR-----LRVPSVHAGQLAA 237 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP +V D+ LV ++E P V+ YP K++AF + Sbjct: 238 RAGLGVVRLPAALVADDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 295 >gi|149908293|ref|ZP_01896957.1| putative transcriptional regulator [Moritella sp. PE36] gi|149808835|gb|EDM68768.1| putative transcriptional regulator [Moritella sp. PE36] Length = 308 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 17/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F +A GSF A Q S S+IS+ I+ LE ++G++L +R R L LTE G Sbjct: 7 LQLFVSLAEQGSFVAVANQSGQSPSTISKAITRLEKDLGVRLLHRTTRQLQLTEAGESYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + EV L+ T+ +L ++ P+G L+I + GQ + L EF YPDI+++L Sbjct: 67 QTAREVLSLLQNTESKLTQNISTPTGTLKINLPMSFGQLYVVPLLPEFCQQYPDIKLELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + DI D AIR K + S LI R++ + M +A+P +L P + E + Sbjct: 127 FSDDYTDIVESGIDIAIRSGK-LNDSRLIARRICPMDMGIFASPDHLAKFGTPTTPAEFE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGI 241 +HN I + + + T+ P E +I L SY+ ++ Q LG+G+ Sbjct: 186 QHNWIKYR------FKQSGRILTIMLPQAE-QIVELDPKSYVLVDDGNALAQLTSLGTGL 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 A +P ++V+D L I P VY Y K++ F +I K Sbjct: 239 AFMPHFLVRDLVQEGKLTLISSPWRNPEQAVYLYYLSRDYLPAKVRLFIEYIVQK 293 >gi|304391206|ref|ZP_07373150.1| LysR family transcriptional regulator [Ahrensia sp. R2A130] gi|303296562|gb|EFL90918.1| LysR family transcriptional regulator [Ahrensia sp. R2A130] Length = 296 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 131/283 (46%), Gaps = 25/283 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D L F V R GSF AA + ++ SS+SRQI+ LE E+G +LF R R L+ TE G Sbjct: 2 DIDVLHTFIDVFRHGSFASAARERNVDPSSVSRQIAVLEDELGYRLFERTTRRLSATEAG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 H + +L + + P G+LR+ ++ G+ L + F +YP+++ Sbjct: 62 RVYHDRIAGFIDELTLAREAGADVLGAPKGQLRVTASVAFGERWLIPRIATFQTIYPEVE 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LIL + +DI+ + D IRL + S SL+ +L+ AAP Y+ +P+S Sbjct: 122 LDLILSDAVVDIAAEGIDLGIRLGTRM-SGSLVATRLLQTRYRVVAAPDYIAQHGQPVSP 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------ 237 L HN + F +P + + + G I+ ++V LSI L Sbjct: 181 VNLGDHNCLVF--RLPGYRSHWRFRS------GAGDITEVEVRGTLSISNALALRRATLD 232 Query: 238 GSGIALLPDYIVKDN----------PNLVRIMEDVITPSFTVY 270 G GIALL D+ V + P V D T ++ VY Sbjct: 233 GFGIALLADWTVDADIEAGALIDLFPAFVTSAADFDTAAWIVY 275 >gi|197122081|ref|YP_002134032.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171930|gb|ACG72903.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K] Length = 335 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 139/298 (46%), Gaps = 24/298 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+ V +G T AA +L L +S++SR+++ LE +G++L R+AR L LTE G Sbjct: 9 DDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAGRA 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + + + E E+ P G LRIAT LG+ LL + E LL +P + ++ Sbjct: 69 YHARAARLVAEARALDRETAEARGAPQGTLRIATPALLGE-LLAPAVAELLLRHPRLGVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-- 183 L L +D+ + D A+R P+ SSL+ R+L T+ YA+P YL P + Sbjct: 128 LALAPPHVDLLAEEHDLALRT-GPLADSSLVARRLGTLRTGCYASPAYLARRGTPATPDA 186 Query: 184 --QELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYC 235 E + H+ I L+ + D W A RP G L+V S + Sbjct: 187 LRDEAEAHDCI----LLAEAGTDEIWFFGAGATARTVRPAGR-----LRVPSVHAGQLAA 237 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP +V D+ LV ++E P V+ YP K++AF + Sbjct: 238 RAGLGVVRLPAALVADDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 295 >gi|77361788|ref|YP_341363.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876699|emb|CAI87921.1| putative transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis TAC125] Length = 298 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 138/291 (47%), Gaps = 13/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++V + VAR G+ T AAE L++ S++ R+I+ LE + +LF+RHARG TE G Sbjct: 7 DWQDVKVAFEVARLGTLTAAAEALNVHHSTVLRRINNLEKNLNTRLFHRHARGYKATETG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +KL + LE ++ + G L + TT+ ++L ++F L+P +Q Sbjct: 67 AKLFSTAQVIDSSLEQLHNDIAAADSTLRGSL-LLTTVSGFMDVLGDVCEQFQALHPQVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++IL+ K + + A A+R I + L ++ YA Y+ P S+ Sbjct: 126 LEMILEQKRLRLDHGQAHIAVRAGPRPDEGDYIAQHLAQLNSGLYANQRYINKYGMPKSL 185 Query: 184 QELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +HN I+ F +P F W VD+ I P+I L+V+ + + G Sbjct: 186 SDLQQHNFISGVAGFNARVPY----FEW---VDQHIAAPQIK-LRVSETSEATRAVIKGL 237 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + NLV I+ + + ++ + T K++AF + Sbjct: 238 GIGGLQHNVAAQYANLVPILSNELIWCTDIWLVTHHLVHRTAKVQAFSQLL 288 >gi|254472082|ref|ZP_05085483.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211959284|gb|EEA94483.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 296 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF VARSG AA++L L+ ++++R++S LE + KL R G LT + Sbjct: 1 MNWDDARVFLAVARSGQILGAAQRLGLNHATVARRLSALEAALQAKLIDRRTTGCALTSE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + E+ + V+ SG +RI G L L YPD+ Sbjct: 61 GERFFEFAESMETEMLSARAEIGGTDVELSGAVRIGAPDGFGVAFLAPRLGALNERYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL+ ++ +S AD A+ + +P + L+ RKL + YA+ Y P + Sbjct: 121 TLQLVPLHRAFSLSKREADLAVTVGQP-EHGRLVSRKLTDYSLGLYASRTYADRYGLPQT 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL +H LI + DLI N+ A + + R+ C S L + GSGI Sbjct: 180 EEELKQHRLIGYVDDLI--FASSLNYSAEFSKEW-QSRLEC---ASALGQTEAVRAGSGI 233 Query: 242 ALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L +I N + V ++ E I+ S+ Y E+ ++ ++KA +FI Sbjct: 234 GILHGFIADGNDDFVPVLPERRISRSY--YLVTHESARHLRRIKAVSDFI 281 >gi|117619725|ref|YP_854742.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561132|gb|ABK38080.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 301 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 144/299 (48%), Gaps = 15/299 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F W+ + F VA G FT AA +L +S + +SRQ++ LE + KL R R + LTE Sbjct: 2 FGWEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTEL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +R ++ L ++ + P G LRI + G++ + + +F++ +P + Sbjct: 62 GEIYYRHCRQLLDNLYEAELAVGRHQAVPQGTLRITAPVSYGESRIAPLVNDFMVRFPQL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L N+ +D+ + D A+RL ++ SSL+ RKL + A+P Y P S Sbjct: 122 EVTLNLTNQLLDLVHEGYDLALRLGH-LKDSSLVARKLAQRVPYVCASPAYTARHGMPNS 180 Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + EL +H L+ D W T+D RP L NS +++ + G G Sbjct: 181 LSELTRHTCLVGNSD---------EWHFTLDGRPHSVRVHGLLHCNSGHALLDAALKGIG 231 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 I LPDY V D+ L+ ++ ++ P+ ++ YP + K++ +++ + D Sbjct: 232 IIQLPDYYVSDHLAQGELIELLPELRAPAEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290 >gi|154247175|ref|YP_001418133.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161260|gb|ABS68476.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 301 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 22/271 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LRVF VAR G AA +L L+ ++++R++ LE +G LF R G TE Sbjct: 1 MDWDHLRVFLAVARQGQLLAAARRLGLNHATVARRLDALEEALGAPLFDRRPAGCVPTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L V ++ ++++ SG +RI LG L L LYPD+ Sbjct: 61 GERLLPAAERVEAEMLGIAEGFRDAAADVSGTVRIGAPDGLGNYFLAAELGALTALYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + +S AD AI L +P++ L+ R L+ + YAA YL P S Sbjct: 121 VVELVPLPRTFSLSRREADLAIVLDRPMEGRLLVSR-LIDYTLSVYAARAYLDRHGTPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYCVL 237 +++L H ++T +ED + + +D G R C V + M+ Sbjct: 180 VEDLAGHVVVT-------GVEDLAYASALDYSGVLEKHGRSRFRCASV---MGQMEAVRA 229 Query: 238 GSGIALLPDYIV-----KDNPN-LVRIMEDV 262 G+GI +L D+ P+ LVRI+ + Sbjct: 230 GAGIGVLHDFAAGRHLEAQGPDALVRILPGI 260 >gi|85703828|ref|ZP_01034931.1| transcriptional regulator, LysR family protein [Roseovarius sp. 217] gi|85671148|gb|EAQ26006.1| transcriptional regulator, LysR family protein [Roseovarius sp. 217] Length = 301 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 14/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L FL +PDI + + Sbjct: 66 YDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGTFLDEFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P+Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPNYFEKYGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSSQAGGAV----WKLTA--PSGEKRQVRTAGGLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ + + M D+ +Y YP K++AF +F+ Sbjct: 239 YLPSFLYSRAMADGLIEDAMPDLPLELQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|241205197|ref|YP_002976293.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859087|gb|ACS56754.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 307 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 145/291 (49%), Gaps = 16/291 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V +GSFT AA L + ++++SR+I+ LE E+G++L R R L LT Sbjct: 2 LDLNDIMIFARVVEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLNLTAS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +S+ +E L E+ +P+G +RI+ + G + LQ + EFL P Sbjct: 62 GRLYYEESSQALRTIEGANQRLAEARAEPAGTIRISAPVGFGGHFLQDAIFEFLSTCPKA 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L + +++ D A R ++ S+L+ RKL ++H A+P YL P + Sbjct: 122 RVELRLTDDRLNLVESGIDLAFRT-GILEDSTLVARKLGSLHRLLCASPDYLARRGPPAA 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 ++L +H+ + G WL ++ P G+ ++ N ++M + G Sbjct: 181 PEDLVRHDCVIAGQ-----AAHAQWL--LEGPHGQETVAVSGRFAANEMQAVMAAAIAGH 233 Query: 240 GIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIA LP + +KD L R+++ TP+ ++ YP + +KAF Sbjct: 234 GIAQLPHRFAEACIKDG-RLRRVLDGYTTPAGGLHVVYPSSRHLPPLVKAF 283 >gi|218547658|ref|YP_002381449.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC 35469] gi|218355199|emb|CAQ87806.1| putative DNA-binding transcriptional regulator [Escherichia fergusonii ATCC 35469] Length = 304 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W T D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPITCSDGQLHEVKY-VLSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|222110153|ref|YP_002552417.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221729597|gb|ACM32417.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 304 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 139/285 (48%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G+FT AA+ L L + ++++ + LE + +KL R R +T+T G+ + Sbjct: 7 MRIFARVVEAGTFTRAADSLQLPKGTVTKHVQALEERLRVKLLNRTTRRVTVTADGAAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + + + + ++ P G+LR+ + + L+ NL +F YPDIQI L Sbjct: 67 DRTVRLLADFDDIEASMSQARANPRGRLRVDVGSSVARLLIVPNLAQFQERYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ + AAP YL+ P +L+ Sbjct: 127 VSDRTVDLIGDNVDCVIRGGE-LADQSLVARRIGNLEFITVAAPAYLERFGVPAHPLDLE 185 Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + +I F + + +F+ V G ++ + N+YL+ + V G G+ + Sbjct: 186 RSHRTVIYFSPVSARRYPLEFHKDGEVIETSGPSHLAVNESNAYLNAL---VAGQGVGQI 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + + LVR++ D P VY YP + K++AF Sbjct: 243 TTFQAQQHFERGELVRVLPDWSHPVLPVYVVYPPNRHLSAKVRAF 287 >gi|83746735|ref|ZP_00943784.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|83726688|gb|EAP73817.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 319 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 19/295 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F VAR+ + AA++L + Q+++ R+I+ LE E+ KLF R + L LT Sbjct: 26 MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 85 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + H T + + + + +G +R+ATT L + + + L +P I Sbjct: 86 GEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 145 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + +++ AD A+R +P + LI R++ TI YA+ YL+ EP+ Sbjct: 146 DIVCLASKSIANLTKREADVAVRTLRPT-APDLIARRVATIETGLYASRGYLRARGEPVE 204 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+L+ L P+ + W A P+ R+ LQ +S ++I + + G GI+ Sbjct: 205 GSAFAGHDLV----LYPRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGIS 259 Query: 243 LLPDYIVKDNPNLVRI------MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 L + LVR+ M+D V+ L T +++A N I Sbjct: 260 ELVCCRADPHSELVRVLPHRRRMQD-------VWLVTHADLHKTARVRALMNCIV 307 >gi|89073223|ref|ZP_01159753.1| putative transcriptional regulator [Photobacterium sp. SKA34] gi|89050933|gb|EAR56397.1| putative transcriptional regulator [Photobacterium sp. SKA34] Length = 294 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 9/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T A+ + + ++++R+I LE + I+L RHAR L+LTE G K Sbjct: 4 DDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEAGQK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L T + E +GKLRIA ++ + +LQ L F+L +P I IQ Sbjct: 64 FYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPTNITKVMLQPLLNAFMLEHPAISIQ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + N+ + D R+ P + S+LI R++ + A+P YLK EP Q+ Sbjct: 124 LYMSNEPDQLDPTDWDVMFRI-GPQRDSTLIARRINEVKDILVASPEYLKKNPEPKHAQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ L+ + + N G S L V + + C G GI L+P Sbjct: 183 LHDHVLLKGNPLLRWRLNNHNGETVTINERGRFEASELNV-----VRKACCAGLGITLMP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 D +++ + + +++++ VY Y KL+ F +F Sbjct: 238 DVMLEKYIADGEVTQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284 >gi|54309806|ref|YP_130826.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46914244|emb|CAG21024.1| putative transcriptional regulator [Photobacterium profundum SS9] Length = 292 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 11/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T A+ + + ++++R+I LE + ++L RHAR L+LTE G K Sbjct: 4 DDLNLFRMVVENGSYTGASRKTQVPVATLTRRIQALEECLNLRLLNRHARKLSLTEAGQK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L T + E +GKL+IA +L + LLQ L F+L +P I I+ Sbjct: 64 FYDDCAPLLQQLVDTTEHISEECKGAAGKLKIAAPSNLTKVLLQPMLNAFMLKHPAISIE 123 Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D D I R P + S+LI R++ + A+P YLKN EP Q Sbjct: 124 LHMSSE--PEQLDPTDWDIMFRVGPQRDSTLIARRISAVKDILVASPIYLKNNPEPKHAQ 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H L+ L+ + D N G + N + + C G GI L+ Sbjct: 182 DLHDHTLLKGNPLLRWRISDHNGDTVAINERG-----LFEANQLDVVRKACCAGLGITLM 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P+ +++ ++ LVRI+ + VY Y KL+ F F Sbjct: 237 PNVMLEQYIESGELVRILNNWSANPREVYLLYNHRDYQPEKLRLFIEF 284 >gi|17547046|ref|NP_520448.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429347|emb|CAD16034.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 299 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F GS + AA +L LS RQ+ LE +G+KL R R +LT+ G + Sbjct: 7 MQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTDGGRLFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +LE Q ++ ES P G+LRI+ I G L L EF+ +PDI ++L Sbjct: 67 ERAKNILAELEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDITVELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D A R + S L+ R+L + A+P YLK P + ++L Sbjct: 127 LTNRTVDLVEEAFDAAFRT-GDLPDSGLMARRLAPHRLMLCASPGYLKMRGHPRTPEDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 KH + F + F D + P +S ++ V G GI L P Sbjct: 186 KHECLVFAHTSLRTQWSFEG---PDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQPAE 242 Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ L RI++ +++ Y + T KL+AF +F+ Sbjct: 243 LLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFV 288 >gi|148253786|ref|YP_001238371.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405959|gb|ABQ34465.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 297 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 127/277 (45%), Gaps = 14/277 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+ F V R SFT AA +L +SQS++S I LE+ +G++L R+ RG+ TE G + Sbjct: 7 DHLKAFKAVGRERSFTKAAAKLGVSQSALSHTIRELESRLGVRLLTRNTRGVNPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + +E L++ +P+G +RI+ + +L LK L YPDI ++ Sbjct: 67 LLRTVAPRLDDIEAELASLRDFQDRPAGTIRISAGDHAVRAILWPKLKRLLAAYPDINVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ DNK +DI + D +RL + + + R I AP YL P + Sbjct: 127 LVSDNKLVDIVEEGFDAGVRLGEQVAKDMIAVRISPDIRFAVVGAPSYLDGRSPPERPDD 186 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H I T G L E V R G+ L NS + + + G G Sbjct: 187 LVGHRCINLRLSTHGGLYAWEFEKRGKELKV-RVEGQ-----LAFNSIFEVYEAALAGFG 240 Query: 241 IALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274 +A +P D ++ D L R++ED P + YP Sbjct: 241 LAYVPEDMVLADVAGGRLRRLIEDWCVPWTGYHLYYP 277 >gi|34496588|ref|NP_900803.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34102442|gb|AAQ58808.1| probable transcriptional regulator LysR family [Chromobacterium violaceum ATCC 12472] Length = 321 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 6/296 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + R GSFT AAE+L ++S +S+ + LE + G L R+ R + LTE G Sbjct: 8 DAQALLAFDALVRRGSFTAAAEELDCTKSRVSQLVKALEKQFGTVLVLRNTRRVALTETG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L E+ LE +I++ E+ + SG L I++ Q LL L E +L+P +Q Sbjct: 68 QRLAVHARELRSLLERARIDINEAEGEVSGPLVISSITSFAQYLLAPILAELAVLHPCLQ 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++N+ D + D IR R + +L+ + L + A+A+P YL + Sbjct: 128 LKLQVENRLQDPIAEGLDFCIRTRN-VHDDALVAKPLGLVREWAFASPDYLAKAPPLATP 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 +L H I PK + WL D + R+ L + Y ++ + GSG+A Sbjct: 187 DDLPLHR-ILLDTSRPKLRDTPEWLLEKDGQQKQVRVQPVLSSHQYAPLLSAAIAGSGVA 245 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LLP Y+ + + LV ++ + VY YP K +AF + + R Sbjct: 246 LLPAYVASEHLRSGRLVPVLPGWSHDCWPVYLVYPYRHPLPRKYEAFIQHVVPRMR 301 >gi|327480180|gb|AEA83490.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 299 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 132/281 (46%), Gaps = 25/281 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F V GSF AAE+L S S +SRQI+ LE + +L YR R ++LTE G Sbjct: 4 WEGLDEFVAVVECGSFMRAAERLRASSSHVSRQIARLEERLQARLLYRTTRRVSLTEAGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + + P+G LR+ + G+ + + EF+ +P +++ Sbjct: 64 TFFARCQRLIEERDDAFLAISDLHSAPTGLLRMTAAVAYGERFIVPLVNEFMARHPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL K + S L+ ++ M+ AAP YL+ P ++ Sbjct: 124 DIELSNRTLDLVQEGYDLAIRLGK-LGESRLVATRIAPRAMYLCAAPGYLERYGRPHTLS 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVL 237 EL +HN LI D+ W D +P G R NS +++ + Sbjct: 183 ELARHNCLIGTSDV---------WSFQSDGREQHFKPSGNWR-----CNSGQAVLDAALR 228 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G G+ LPDY V + LV ++E P V+ YP+ Sbjct: 229 GFGLCQLPDYYVLEPLRRGELVSLLEANQPPDTAVWAVYPQ 269 >gi|281177428|dbj|BAI53758.1| putative transcriptional regulator [Escherichia coli SE15] gi|330910054|gb|EGH38564.1| transcriptional regulator LysR family, yafC [Escherichia coli AA86] Length = 304 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV ++ D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIARGELVELIADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|254237602|ref|ZP_04930925.1| hypothetical protein PACG_03684 [Pseudomonas aeruginosa C3719] gi|126169533|gb|EAZ55044.1| hypothetical protein PACG_03684 [Pseudomonas aeruginosa C3719] Length = 312 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSFT AA+ L LS + +SR IS LE + +L +R R L LTE G + Sbjct: 7 MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E + ++P G+LR+ + + +GQ+ L + + L+PD+ I+L Sbjct: 67 ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I + + S + ++L +IH A+P YL+ P S+ +L+ Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + D P E W+ ++ GE +S VN + Q GIALL Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEK--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y+ N L+R++ T+Y YP R ++ K R W Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 285 >gi|221201991|ref|ZP_03575027.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia multivorans CGD2M] gi|221204879|ref|ZP_03577896.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia multivorans CGD2] gi|221175736|gb|EEE08166.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia multivorans CGD2] gi|221178074|gb|EEE10485.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia multivorans CGD2M] Length = 317 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + D ++ F S T +A +L LS+S +S++IS LE +G++L R R + TE Sbjct: 1 MNMDDIQAFLFAVERQSITDSARRLGLSKSVVSKRISDLERTLGVQLLMRSTRNVIPTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++V S+ +L + E + G+LR+ + L + L + F +P + Sbjct: 61 GRAFYQVASQAMRQLVDVSEAIAERAHGVCGELRVTAPVSLTRRWLGSAIAAFAASHPPL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L D++ +++ ++ D AIR + + S+LI R++ + +P Y+ EP S Sbjct: 121 RVTLETDDRIVNLDVERFDVAIRSAR-LPDSALIARRIGSCERVIVCSPEYIAKHGEPKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLG 238 I +L KH + + P W G+PR S N+ ++ + G Sbjct: 180 IDQLLKHRCLNYSTAAPSA----TWSFAAPDGHGKPRAINPTSAFLSNNGETLCDAAIHG 235 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIALLP YIV D + L R++ D VY Y + + KLK F Sbjct: 236 VGIALLPRYIVDDALRDGRLARVLADASPQDEIVYAVYARSPFVSNKLKLF 286 >gi|152983030|ref|YP_001352585.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151283107|gb|ABR91517.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 305 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 12/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +GSF+ A + +QS++S+Q++ LE E+G++L R R L LTE+G + Sbjct: 7 MKVFVRVVEAGSFSAVAHESDTTQSAVSKQVAALERELGVRLLTRTTRSLALTEEGERYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + ELQ + +G LRIA ++ G+ L ++ FL + ++I L Sbjct: 67 EQLRRLIAEISEAEGELQRGEQQLTGWLRIAASVGFGRLKLMPLVQSFLAEHRGVKIDLR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL----KNCREPLSI 183 L + ID+ D A+RL + SSLI R++ T A YL K + P++ Sbjct: 127 LHDGFIDLVEQGIDVAVRL-GDLPDSSLIARRVGTASRMLMAHRSYLRSLPKGTKTPITP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 +L +HN I + +L + +F IG RI LQ NS I + G Sbjct: 186 DDLSEHNCIVYTELAMRNTWNFKAGPGAPDAIGTTRIVRVEGNLQTNSSEVIRASILGGM 245 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI P ++ + + + RI+ D T + P +++ K+KAF + K Sbjct: 246 GITYSPTWLFEKELASGEVQRILPDWETLPIPIQLVSPRERRHSAKVKAFAEHVGQK 302 >gi|162453042|ref|YP_001615409.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161163624|emb|CAN94929.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 303 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 10/250 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R F VAR SF+ AA L L+ SS+S+Q++ LE +G +L R R ++LTE GS Sbjct: 9 DEMRAFLEVARRQSFSAAARALGLTSSSVSKQVARLEERLGAQLLRRTTRRVSLTEAGSL 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E + + + P G LRI+ LG + + YP+++I Sbjct: 69 YAERADRILSDIEEARRAVADLDGTPRGTLRISAPTVLGSIRVAPAVLACRAKYPELRID 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D A+RL I +SL+ R+L A+P YL+ P +++ Sbjct: 129 LDLTDRIVDLVAERIDVAVRLAAEISPASLVARRLADDLRVLCASPRYLRRHGTPRRLED 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIA 242 L H+ IT +L P W T+ P GE P + + +++ V G G+A Sbjct: 189 LADHDCITL-NLDPVA----RW--TLVGPEGERVVPVSGTFRSSDTITLRDAAVAGVGLA 241 Query: 243 LLPDYIVKDN 252 LPDY+V+D Sbjct: 242 NLPDYVVQDQ 251 >gi|295676755|ref|YP_003605279.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436598|gb|ADG15768.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 355 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 11/286 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA L LS + ++R ++ LE +G +L R R L+LTE G+ Sbjct: 6 SMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGATY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE + + + +P G LRI + G + L ++ + YPD+ + Sbjct: 66 LERVRHILADLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T +M A P YL P ++L Sbjct: 126 TLADRHVDLVEEGFDVGILVARQMRSASIVTRRLTTGYMTVCATPEYLAQHGTPKRPEDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 H+ ++ + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 LGHSCLSR-----PTDQGGGEERVFSGPDGEVRVRPTNAIAANNAEMLRQFALLGMGVAI 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR+++ P + YP L K++ F Sbjct: 241 LPSYLIGRDLAAGRLVRLLDQYSLPPIEITIAYPSRLHLPAKVRTF 286 >gi|209519774|ref|ZP_03268560.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209499784|gb|EDZ99853.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 334 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP GKLRI +G+ L+ L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPALCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ A+P Y+K P S+++LD Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCASPDYIKRAGTPASLEDLD 185 Query: 188 KHNLITF 194 H + + Sbjct: 186 NHKAVNY 192 >gi|149203317|ref|ZP_01880287.1| transcriptional regulator, LysR family protein [Roseovarius sp. TM1035] gi|149143150|gb|EDM31189.1| transcriptional regulator, LysR family protein [Roseovarius sp. TM1035] Length = 301 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 136/297 (45%), Gaps = 26/297 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V G FT AA ++ +S+S++S+ +S LE +G +L R R ++ TE G Sbjct: 6 EMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + + PSG LRI+ D G N L L +FL +PDI + + Sbjct: 66 YDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGQFLDEFPDITVNM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+N+ +++ + D A+R+ + ++ S+L RKL A+P Y + P I +L Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFQKHGRPQKIDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242 ++H L+ + + W T P GE R L VN S++ + G GIA Sbjct: 185 NEHKLLHYSSQAGGAV----WKLTA--PSGEKRQVRTAGGLSVNDGQSLLNAAISGLGIA 238 Query: 243 LLPDYIVKDNPNLVRIMEDVIT----PSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LP ++ R M D + P +Y YP K++AF +F+ Sbjct: 239 YLPSFLYS------RAMADGLVEDAMPELPLELQGIYAVYPPGRFTQPKVRAFIDFL 289 >gi|92113112|ref|YP_573040.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796202|gb|ABE58341.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 17/292 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD++ F VAR G+F+ AA L +S S +SR I L++++G L YR R LT+ G+ Sbjct: 4 WDRIEAFIEVARLGTFSAAARHLQVSTSHVSRLIGQLKSQLGTTLLYRTTRQTRLTDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ + + + +P G LR+ G+ + + +F +P ++I Sbjct: 64 LYYRHCRHLFDGFREAEEAIVDFQSRPKGTLRLTCATTFGERYIAPLVNDFQCRHPQLEI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + N+ +++ + D AIR+ ++ SSLI R+L + +P Y + P S+ Sbjct: 124 DMHFTNRRVELVEEGFDVAIRM-GVLRDSSLIARRLCERREYVVGSPAYFERAAPPHSLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL HN + + D +WL ++ E R+ + NS +++ + G G+A Sbjct: 183 ELPHHNCL-------RGSRD-SWLFEINGHRREVRVDGRWRANSGPALLDAVLKGLGLAQ 234 Query: 244 LPDYIVKDNPNLVR--IMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 LPDY V P+L R ++ + FT V+ YP + K++ F +F+ Sbjct: 235 LPDYYV--TPHLARGELVPVLTAYQFTDTAVWAIYPRHRHLSPKVRQFVDFL 284 >gi|206558465|ref|YP_002229225.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198034502|emb|CAR50367.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 294 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLTE+G + Sbjct: 9 AFVRAAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + S+ +P GKLR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR P+ SSL+ R+L A P YL P + +EL+ H Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTPRELEAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + P + +W D + + N+ ++ + G GI +PD++ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D + LV +++D +P + + + KL+ F +F+ Sbjct: 245 RDALEHGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|311106706|ref|YP_003979559.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310761395|gb|ADP16844.1| bacterial regulatory helix-turn-helix protein, LysR family protein 109 [Achromobacter xylosoxidans A8] Length = 311 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 135/270 (50%), Gaps = 7/270 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F G+ + A + LSQ ++S+ ++ LE ++ ++L R + TEQG + + Sbjct: 7 MRAFVRAVELGTLSAVAREQALSQPALSKIVAALEKDLNVRLLERSTTRVVPTEQGKRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V + + + + KP+G LRI + LGQ L +++FL YPDIQ++LI Sbjct: 67 ERATRVLEEYSEAVADARGQTEKPAGFLRINAPVALGQFRLNALVRKFLDEYPDIQVELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D A+RL + ++ I RK + AAP YL +P + ++L Sbjct: 127 LNDRFVDLVEEGVDVALRLGGNLPPNA-IARKAAESPRYLVAAPSYLAQRGKPRAPRDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + F L + + AT+ + R +VN+ L+I + +G+GI L P + Sbjct: 186 AHEYVRFAWLAAGDTLELHQGATLATVQTQGR---FRVNNALAIRESLAMGAGIGLCPAW 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274 +V+D + L+R++ Y YP Sbjct: 243 LVQDLVASGELLRVLPKWSATPQEAYLIYP 272 >gi|91780255|ref|YP_555462.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692915|gb|ABE36112.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 325 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 3/246 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F V +GSF AAE L +SQ +IS+ IS LE +G L YR +R L+LT G Sbjct: 6 DFEAWAIFARVVDTGSFAKAAESLAMSQPTISKAISRLEQRLGTALLYRTSRRLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ E + E + P G +R+A + G L + FL YPD+ Sbjct: 66 RMAMERAIRIMNEGEAVEAEASAQAATPHGTVRVAAPMSFGLKYLTPLVPAFLDRYPDVN 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L LD+ +D+ D D A+R+ + + SSL R+L + A+P YL P Sbjct: 126 IELALDDTLVDVVADGFDVALRIAE-LADSSLRSRQLCAVRRPLVASPGYLDRHGRPRHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +EL+ H + + +L + F+ + P + N+ ++ + G G+AL Sbjct: 185 RELEHHACLIYTNLPTPGLWRFS--HATEGECAVPVKGKMWSNNAEALGPALLAGHGLAL 242 Query: 244 LPDYIV 249 P+++V Sbjct: 243 QPEFVV 248 >gi|288961975|ref|YP_003452285.1| transcriptional regulator [Azospirillum sp. B510] gi|288914255|dbj|BAI75741.1| transcriptional regulator [Azospirillum sp. B510] Length = 297 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 11/253 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A SF A +L +S S++ + I+ LE G +LF+R R ++LTE+G+ H Sbjct: 9 AFVQAAEDLSFVAAGRKLGISASAVGKSIAKLEESAGTRLFHRTTRRVSLTEEGAAFHER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + L + L ++ P G+LR++ +G + L + EF LYPDI++ + + Sbjct: 69 CRRILDDLRDAETMLSNATGIPRGRLRVSVPT-IGYHFLLPVIPEFRRLYPDIELDIDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ ID+ + D IR P+ SSL+ R+L A+P YL+ P + EL+KH Sbjct: 128 DRLIDVVEEGLDAVIR-SGPLTDSSLMSRRLGPFRFVLCASPSYLERKGIPRHLHELEKH 186 Query: 190 NLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + + F P + W A VD P P S L N+ ++ G GIA +P Sbjct: 187 DCLRF--RFPTSGKIQAWRFRDAAGVD-PFRRP--SPLTCNNMEALRGAATAGLGIAYMP 241 Query: 246 DYIVKDNPNLVRI 258 D++ +D+ + R+ Sbjct: 242 DFLARDDVDAGRL 254 >gi|209518411|ref|ZP_03267234.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501132|gb|EEA01165.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 296 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 13/276 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +L F+ V +G F+ AA + SQS+IS+ I LE +G+ LF R R +TLT+QG Sbjct: 4 FHELNAFFAVVEAGGFSAAARRTGESQSAISKAIGALEKRLGVPLFNRSTRSVTLTDQGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 K + T + +++ EL S++ SG +RIA G+ + + E L L+P +++ Sbjct: 64 KYYERTKPLLDEIDVADSELTSSTLDVSGLVRIACASTFGRLHVLPLVPELLSLHPGLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L + D+ D D AIR+ P+ + + +++ + + + Y + P Sbjct: 124 DLVLSDYVRDMVEDRIDLAIRV-GPVNNPDSVVKRIASTPLVCVGSRRYFERHGTPKEPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGI 241 EL HN + +G L +E NW P G P L NS +I + G GI Sbjct: 183 ELANHNCLLYGGL----LESANW--PFHGPRGRFSVPVRGNLSSNSVETIRSAVLAGVGI 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 L + D +P++V +++D I + V +P Sbjct: 237 GLFAKLSLADELEHPDIVTVLDDFIQDARDVSIIWP 272 >gi|78066743|ref|YP_369512.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967488|gb|ABB08868.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 321 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++++++ + LE + +KLF R R + +T G+ Sbjct: 4 FDAMQAFARVVEAGSFTKAAETLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +S P G+LR+ + +L L F YPDIQ+ Sbjct: 64 AYYDRVVRLLADMDDAETSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R +P +L+ R++ + + YA+P YL P Sbjct: 124 DMGVSDRVVDVIGENVDCVMRGGEPTD-RALVARRVGDLRLGVYASPAYLARAGMPTHPD 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G +P M TV G ++ N+YL + + Sbjct: 183 ELEDTHHRIVGFLWARTGKALPFAMTCDGEQVTVR---GRYVLAVDDGNAYL---EAGLA 236 Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ + LV + E +Y +P + KL+ F +++ Sbjct: 237 GLGILWLPDYMAGVHRARGELVPLFEQWQLEPMPMYVAFPPNRHVSAKLRVFVDWV 292 >gi|312883221|ref|ZP_07742949.1| putative transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369084|gb|EFP96608.1| putative transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 291 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ + F VA SFT AA++L+ S + ISR+++ LE + +KL R R ++LTE G Sbjct: 3 NWEGVSEFVAVAEVESFTSAAKKLNTSVAQISRRVASLEERLAVKLLNRTTRRVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + LE ++ + + P G +++ + G+ L L +FL LYP + Sbjct: 63 QLYYQQCKHLVEGLELAELAVTQMQSTPKGMVKVTAPVTFGEQNLAPLLHQFLELYPQVD 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+L N+ +D+ D AIR+ + ++ S+++ ++L T ++ A+P YL+ EP ++ Sbjct: 123 LDLMLTNQQLDLIETGVDIAIRVGR-LRDSTMMAKRLATRQLYVCASPSYLEKFGEPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL H + G + D+ W ++ RIS ++ NS ++ G G+ Sbjct: 182 SELANHQCLA-GSV------DY-WRFRNNKTEQSVRISGRIRCNSGYALHDAAKRGIGLV 233 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+ V+++ +LV ++ + ++ YP+ + K++ +F+ Sbjct: 234 QLPDHYVQESLEQGDLVEVLAEYRDTREGIWALYPQNRNLSPKVRLLIDFL 284 >gi|118161335|gb|ABK64019.1| putative LysR transcriptional regulator [Janthinobacterium lividum] Length = 326 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 112/203 (55%), Gaps = 3/203 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++VF V +G F+ AA++L +S SS++ Q++ LE G++L R R ++LT +G + Sbjct: 25 EAMKVFCAVVEAGGFSKAAQRLGISTSSVTNQVAALEKHFGVRLLQRTTRSMSLTAEGMQ 84 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H +V + + L +++ +PSG LR+ + +NL+ L F+ YPDI ++ Sbjct: 85 CHAQARQVLADMAALEASLLQAAARPSGSLRVDMPSSISRNLVAPALPRFIAAYPDISLR 144 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D +R+ +P Q SSL+ R L+ + A+P ++ P + QE Sbjct: 145 LTVSDRLVDMVEEGIDVMLRIGEP-QDSSLVARSLLGMDYLCCASPAFVARHGMPQAPQE 203 Query: 186 LDKHNLITFGDLIPKCMEDFNWL 208 LD+ + + F L PK WL Sbjct: 204 LDQFSCLHF--LYPKSRLVRPWL 224 >gi|86358163|ref|YP_470055.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282265|gb|ABC91328.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 307 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 148/303 (48%), Gaps = 17/303 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V +GSFT AA L + ++++SR+I+ LE E G++L R R L LT+ Sbjct: 2 LDLNDIVIFARVVEAGSFTVAARLLAMPKTTVSRRIAALEREFGVRLLQRTTRSLRLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +SE LE + L E+ +P+G +RI+ + G + L + +FL YP Sbjct: 62 GRLYYEESSEALRTLEQANLRLAEARAEPAGTIRISAPVGFGGHFLAAAIFDFLAAYPKT 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L + +++ + D A R ++ S+LI RKL + + A+P YL C P Sbjct: 122 KVELRLTDDRLNLIENGIDLAFRT-GILEDSTLIARKLGSTYRILCASPGYLARCGTPGR 180 Query: 183 IQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +L H+ + G P +E + TV +S N ++M + G Sbjct: 181 PADLTAHDCVIAGPSAANAPWVLEGADIRETVT-------VSGRFAANEMQAVMAAAIAG 233 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LK 293 GIA LP + + + L R+++ TP+ ++ YP + + +KAF + L Sbjct: 234 YGIAQLPHGVAEACIADGRLRRVLDGYTTPAGGLHVVYPSSQHLSPLVKAFIDLAATRLN 293 Query: 294 ARD 296 ARD Sbjct: 294 ARD 296 >gi|256061854|ref|ZP_05451989.1| Transcriptional regulatory protein, LYSR family [Brucella neotomae 5K33] Length = 301 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 27/299 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 8 AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + + ++ + + SG +RI G N L L YPD Sbjct: 68 AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTLK 186 Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 S ++L++H LI + DL+ P+ D+ +V+S L + Sbjct: 187 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 232 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 233 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 289 >gi|254437384|ref|ZP_05050878.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198252830|gb|EDY77144.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 294 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 8/300 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DW L+ F V ++G+ A QL SQ ++SRQ+ LET+ G+ LF R L LT Sbjct: 1 MNIDWSLLKTFLTVVQAGTVAQAGAQLACSQPTVSRQLKELETQTGLTLFDRRGYRLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G+ + + + + + + +G +RI+T+ + + L L YP Sbjct: 61 DAGASILEFAQNMADQADHLALAIAGKETVVNGTIRISTSEVIAYHFLPPVLVTLQEQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I +++I++N ++S AD AIRL +P L++ K+ T+ M +A+ YL+ P Sbjct: 121 EIDVEIIVENSVANLSAREADIAIRLFRP-DKLGLVRTKIGTLEMGVFASKSYLELYGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L HNL+ + D + ++ F P P + ++ +++L G+G Sbjct: 180 RTLDDLVYHNLLGY-DQSAEILDGFR----KHLPDANPSLFSVRCDNHLVYWNMIRAGNG 234 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 I + + L R++ D+ V+ EAL+ T +++A + L R W+ Sbjct: 235 IGFCSTLMASQDKMLTRVLPDLKPDGNDVWLATHEALQKTPRVRAVWELLSSQLTKRLWE 294 >gi|331671738|ref|ZP_08372534.1| putative transcriptional regulator LYSR-type [Escherichia coli TA280] gi|331070727|gb|EGI42086.1| putative transcriptional regulator LYSR-type [Escherichia coli TA280] Length = 304 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFYSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|254438687|ref|ZP_05052181.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198254133|gb|EDY78447.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 292 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 10/298 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R + VAR G+ + AA+ L + +++ R I GLE +G+KLF RHARG T TE G Sbjct: 3 NWDEIRTAFQVARIGTVSGAADVLGVHHATVIRHIDGLEKRLGVKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +V + + ++ SG L + T++ + +L L F PDI Sbjct: 63 QDLMQVAAATEDQFTQLAGRIRGHGDGVSGDL-VVTSLVVLSPMLTPILANFRRENPDIT 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + D + + A AIR + P Q +++Q + MH AAP Y+ + P Sbjct: 122 VRFLTDERLFRLEYGEAHVAIRAGEVPNQPDNVVQ-PFMRQKMHLAAAPSYVADHGTPDG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I +L H I G + + FN WL R + E RI + Y+++ ++G+GI Sbjct: 181 IDDLPNHWFI--GHDNKENLAPFNRWLT---RQVPESRI-VFRTTDYIAMFDAVLVGAGI 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + ++ P+L+ ++ S ++ L T K++ F F+ ++ W F Sbjct: 235 GFVTTWEMQQYPDLIDVIPSQDDWSAPLWLVTHVDLHRTTKVQTFLAFLKKESESWAF 292 >gi|304412332|ref|ZP_07393940.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307306116|ref|ZP_07585861.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|304349367|gb|EFM13777.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306910989|gb|EFN41416.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 337 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 13/284 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS + Sbjct: 11 VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +E+T+ +L PSG+L+IA I G LL L +P I + L+L Sbjct: 71 CRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + IDI + D AI + P+ S+LI R L M A+P YL + ++ KH Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182 Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 L F + C + E + VN+ +++Q + G G A LP+ Sbjct: 183 PAELAAFNRINHPCANSETLTHARSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 V ++ LV ++ + +++VY K K+K N Sbjct: 243 EVHKYLESGQLVPLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286 >gi|296159411|ref|ZP_06842236.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295890395|gb|EFG70188.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 298 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 20/306 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L VF V SGS T AAE+L + S +SR ++ LE ++ L R R L LT Sbjct: 1 MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + H +E + + +PSG+LR+ + + ++ F LYP Sbjct: 61 EEGETFLQRARAILHAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L + + +D+ D AIR+ + +Q S+L R L T + A+P YL EP Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIG------EPRISCLQVNSYLSIMQ 233 S++ L +H LI F E N W R G EP I+ +S ++ Q Sbjct: 180 RSVEALREHRLIGF-----TAPEHLNRWPLREGRKGGAAALKIEPAITA---SSGETLRQ 231 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289 + G GIA L D++ + LV I+ +V+ V Y ++ G+++ F +F Sbjct: 232 LALSGWGIACLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDF 291 Query: 290 IFLKAR 295 I + R Sbjct: 292 IAARVR 297 >gi|254707242|ref|ZP_05169070.1| transcriptional regulatory protein [Brucella pinnipedialis M163/99/10] gi|254709216|ref|ZP_05171027.1| transcriptional regulatory protein [Brucella pinnipedialis B2/94] gi|256030739|ref|ZP_05444353.1| transcriptional regulatory protein [Brucella pinnipedialis M292/94/1] gi|261314723|ref|ZP_05953920.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316719|ref|ZP_05955916.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|265987790|ref|ZP_06100347.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|261295942|gb|EEX99438.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261303749|gb|EEY07246.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|264659987|gb|EEZ30248.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 297 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFAGYHLYYPNRRQHPPALAAL 289 >gi|316933355|ref|YP_004108337.1| LysR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315601069|gb|ADU43604.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris DX-1] Length = 315 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 7/290 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +DW+ + F VAR S AA +L + +++SR++ LE + LF R G TLT Sbjct: 8 IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 67 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + + + + + + G +RIA +G L + +F +YP Sbjct: 68 EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIVDFNKIYP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ++LI D + +D+S AD + +P Q L +K+ + YA Y P Sbjct: 128 SIQVELITDTRLLDLSRREADIFVSFFRP-QGKRLSIKKVGEFRISLYATDAYFAGRSPP 186 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++EL+ H I F + E+ WL+ V RP P + + S ++ G G Sbjct: 187 TTVKELESHAFIDFIEDHIYSQEN-RWLSDVLRP---PH-TIFRSTSLVAQSIAVSAGQG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA+LP Y+ +P L+ +M ++ T + ++ E L + ++KA +F+ Sbjct: 242 IAMLPSYVASGHPELLPVMPELFT-TRDIWLSVHEDLLHVARIKAVISFL 290 >gi|300715229|ref|YP_003740032.1| transcriptional regulator, LysR-type [Erwinia billingiae Eb661] gi|299061065|emb|CAX58172.1| Transcriptional regulator, LysR-type [Erwinia billingiae Eb661] Length = 295 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 16/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR++ VV SGSFT AAEQL LS+ +SR+++ LE +G +L R+ R L++T+ G Sbjct: 4 DDLRIYLVVIASGSFTAAAEQLMLSKQYVSRRMAALEDSLGARLLIRNTRKLSVTDTGHT 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E Q + E G RI+ + G + L + EFL +P + Q Sbjct: 64 FAQHAQRILEDIEEAQQAVSERHQALHGAFRISMPMSYGMSHLSPLIAEFLSRHPAVNFQ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D AIR+ + S+L+ RKL + A+P YL+ +P + Sbjct: 124 IELADRYVDVIGEGFDMAIRI-GTLADSTLVARKLGELPRVICASPAYLQRLPQPEKPDD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGI 241 L +H + +G W VD G+ +I +Q N+ ++ V G G+ Sbjct: 183 LLQHACLRYGR-----EGQTGWELKVD---GKRKIMAVSGPVQSNNGEVLLDAAVAGLGL 234 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP++IV LVR++++ I ++ +P+ + + + F F+ Sbjct: 235 VLLPEFIVGGALARGELVRVLDEYIPSPLSLNAVFPQHRQRSEINRQFLAFL 286 >gi|264676383|ref|YP_003276289.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262206895|gb|ACY30993.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 287 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 20/289 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F + GS AA+ L LS +++S+Q+ LE ++G L R R ++LT+ G + Sbjct: 1 MRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +T + ++ S++ +G+LR+ + + L L F+ +P +QI L Sbjct: 61 AECCRLLDGFDTLEQSVRAQSLQVTGRLRVNAPLSFALSTLAPLLARFMQRHPQLQIDLS 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D D +IRL + SSLI R+L ++ A+P YL+ P S+ L Sbjct: 121 MEDRLVDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASVAVLR 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H L+ + LA VD + P + VN+ L + + V G GI LP + Sbjct: 181 GHALLNYS------------LAQVDDGLQVPSEARASVNNSLMLRELLVAGMGIGALPSF 228 Query: 248 IVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + P + + ++D P VY YP K++AF +F+ Sbjct: 229 LAR--PAIAQGQLEALALQDWAEPPRHVYVVYPTQRHLLPKVRAFVDFL 275 >gi|307544078|ref|YP_003896557.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216102|emb|CBV41372.1| transcriptional regulator, LysR family [Halomonas elongata DSM 2581] Length = 289 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 148/285 (51%), Gaps = 11/285 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R F V R+G+ AA++L L Q+++ R+++GLE +G +LF R GLTLT+ Sbjct: 1 MNWDDVRFFLAVYRAGTLRGAAQRLALDQTTVGRRLTGLERTLGSRLFLRTKGGLTLTDS 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ T+E +L + L E + + +G++R+ TT L + + ++ +PD Sbjct: 61 GRQVL-PTAENMERLAVSFERLSEGADERVAGEVRVTTTDALAVDFVVPAIERLRTTHPD 119 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I++ L + +D++ AD A+R +P Q LI R+L + YA YL+ EP Sbjct: 120 IRVILSTTTRLLDLARREADVAVRTLRPEQ-PDLIVRQLGRWEVGLYATQGYLERHGEPH 178 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + H++ + + + +D LA V P G+ R+ +++S L + + G + Sbjct: 179 PDEGFAGHDIALYQEGVTGRQDDT--LAGV--PRGQGRVVA-ELDSSLMLATFVRAGLAL 233 Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLK 284 LPDY+ + + LVR+ D TP + + + L +T +++ Sbjct: 234 GELPDYLAQRDRRLVRVWPDRHRATP-YEAWLVLHQDLAHTARVR 277 >gi|150398061|ref|YP_001328528.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029576|gb|ABR61693.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 315 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 12/292 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +F WD L+ F VAR+G + AA +L S +++SR+I LE + +KLF R+ RG LT Sbjct: 4 NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTT 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + E Q+++ + G +R++T G L L +F+ YP+ Sbjct: 64 MGQRFVETAERIERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLSDFVGRYPN 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ + + +S AD A+ L P ++ L +H Y A YL Sbjct: 124 ISLELVAIQQIMSLSRKEADVAVALAAP-KAGPYHSEVLTPYTLHVYGARSYLAGHPLIR 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLG 238 + +L H + ++D + +D +GE P + Q +S L+ ++ G Sbjct: 183 TRNDLGSHRFAGY-------IDDMIFTPGLDY-LGELQPGLRAHFQSSSILTQLKAVRQG 234 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +LP ++ KD P+L ++ D I T + L ++KA R+F+ Sbjct: 235 LGLCVLPHFMAKDEPDLEIVLPDEIALQRTYWLICHRDLIGMPRVKALRDFL 286 >gi|49085882|gb|AAT51312.1| PA2877 [synthetic construct] Length = 298 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 150/296 (50%), Gaps = 10/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA +GSFT AA+ L + ++++S + LE ++G +L +R R + LT GS Sbjct: 5 DSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + + S + SG+L++ + + L+ L EF +PDI+++ Sbjct: 65 VLERCRHLLEDMEELESLFHDGS-RASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC +R+ + + +SSL+ R+L + + A+P YL+ EP + + Sbjct: 124 LGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD+H + + P W D R + S + VN+ S + C+ G G+ + Sbjct: 183 LDRHWAVNYAS--PSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQI 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 P Y V+++ L ++ + Y YP + +++AF +++ L+AR Sbjct: 241 PAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296 >gi|148559455|ref|YP_001258105.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148370712|gb|ABQ60691.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840] Length = 297 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITAQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|89092406|ref|ZP_01165360.1| transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] gi|89083494|gb|EAR62712.1| transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] Length = 298 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 150/292 (51%), Gaps = 13/292 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D +F VA S+T A QL++ ++++SR++ LE +G+KL R R L+LTE G Sbjct: 3 NLDDTVIFNKVAELSSYTQAGLQLNIPKATVSRRVKQLEERLGVKLINRDTRKLSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L+ TS + ++ +IE +S + P+G+LRI +++G LL + +F +P Sbjct: 63 QYLYNSTSPLLSQV--LEIESSAASFQKHPAGELRITMPVEIGIRLLNEIICDFAKQHPQ 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQ+ + + N +DI + D AIR P + S+LI +K+++ +P YL P Sbjct: 121 IQLDIHMTNDVVDIIKEGFDIAIRGGSP-KDSNLIAKKIMSSRFFLCCSPEYLNEHGRPS 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H LITF P L ++ + + L NS+ +++ G GI Sbjct: 180 HPDQLKQHQLITF----PYSSYQQLKLMKGEQEVMVQANNRLSANSFDMLLKAAKKGLGI 235 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A++P + D + LV + +D T ++ YP+ +K T KL+ F +F+ Sbjct: 236 AIMPTSVCSDALKSGQLVSLFDDWKTDDIGLFALYPDRIK-TKKLELFIHFV 286 >gi|116053880|ref|YP_788317.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|313112269|ref|ZP_07798039.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|115589101|gb|ABJ15116.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] gi|310884541|gb|EFQ43135.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 312 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSFT AA+ L LS + +SR IS LE + +L +R R L LTE G + Sbjct: 7 MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E + ++P G+LR+ + + +GQ+ L + + L+PD+ I+L Sbjct: 67 ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I + + S + ++L +IH A+P YL+ P S+ +L+ Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + D P E W+ ++ GE +S VN + Q GIALL Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y+ N L+R++ T+Y YP R ++ K R W Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHERTIYALYPS-----------RRYLDAKIRTW 285 >gi|91782931|ref|YP_558137.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686885|gb|ABE30085.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 342 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 148/289 (51%), Gaps = 12/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SF+ AA+ LH+++SS++ I LE + ++L R R ++LT G+ + Sbjct: 7 MQVFTRVVDTNSFSGAADSLHMTRSSVTTIIQALEAYLKVRLLNRTTRRISLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + +E ++ +S P GKL++ +G+ L+ L EF YPDI++ L Sbjct: 67 ERCSRILADVEDSESSFSRASA-PRGKLKVDMPGSIGRLLIVPALDEFHARYPDIELMLG 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DCAIR+ P+Q S+L+ R++ A+P Y+ EP+S+ EL+ Sbjct: 126 VGDRAVDLIQDSVDCAIRM-GPMQDSTLVARRVGVSEFVTVASPDYIARNGEPVSLAELE 184 Query: 188 KHNLIT-FGDLIPKCME-DFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H + F + +E DF VD +P+ S L N + +Q + G G+ + Sbjct: 185 SHTAVNYFSSRNGRIVEMDF----VVDGKPVDVRMRSKLAANDGEAYLQCGLRGLGLIQV 240 Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ ++ LV ++ + F + YP+ + +++ F ++ Sbjct: 241 PHFLALPHLESGALVEVLGNCRPSPFPISAVYPQNRHLSPQVRVFVEWV 289 >gi|171317219|ref|ZP_02906418.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171097594|gb|EDT42429.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 330 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 151/304 (49%), Gaps = 31/304 (10%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + D LRVF +V R SF+ AAEQL +S + +S++I+ LE ++G +L +R R +T+TE Sbjct: 27 SPNLDDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTE 86 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ ++ ++ ++ + P G LRI+++ G++++ L +F YP Sbjct: 87 AGERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQ 146 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D++ + D +R+ I + LI R+L T H A+P YL P Sbjct: 147 LNVRLDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPR 205 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI---- 231 ++ +L H+ + + D P G R+ S ++V LS Sbjct: 206 TLADLASHDCLAIKER--------------DHPFGVWRLNVRGETSTVKVGGALSTNHGE 251 Query: 232 --MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +Q+ + G GI L + + L R++ D I P+ ++ YPE + + K++ Sbjct: 252 VAVQWALAGRGIVLRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVC 310 Query: 287 RNFI 290 +F+ Sbjct: 311 VDFL 314 >gi|117617497|ref|YP_854885.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558904|gb|ABK35852.1| transcriptional regulators, LysR family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 300 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 13/301 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + + GSFT AA++L ++++++SR+I+ LE +G++L YR R LTLTE Sbjct: 1 MDLNAALILVRIVDKGSFTAAAQELGMTKATVSRRIAELEQRLGVRLLYRSTRQLTLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + S+ +L ++ + S + +G L++A I+ GQ ++ + EFL YP + Sbjct: 61 GEQYYLRCSKAVDELAQAELMVSASQQEVTGTLKLAVPIEAGQLVVGRLVAEFLQAYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q++L L N+ +D + D +R+ + S+L R+L + A+P YL Sbjct: 121 QVELELTNRIVDPINEGLDAIVRI-GDMSDSNLAARRLWSNARLICASPAYLARSPAITH 179 Query: 183 IQELDKHN--LITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++L H +T G L C E + VD P S +VN+ + G Sbjct: 180 PEDLVHHERVAVTSGFLASHWCFERDDKEVLVDPP------SRFRVNNITCAREAAKAGL 233 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+A LP + + + LV ++ + P +Y +PE KL+ F +FI K D Sbjct: 234 GLASLPAMLCHEELASGTLVSVLPEWQQPRVPIYLLFPERRLMPRKLRVFIDFIVAKGAD 293 Query: 297 W 297 + Sbjct: 294 Y 294 >gi|261325861|ref|ZP_05965058.1| transcriptional regulator [Brucella neotomae 5K33] gi|261301841|gb|EEY05338.1| transcriptional regulator [Brucella neotomae 5K33] Length = 293 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 142/295 (48%), Gaps = 21/295 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG AA +L L+ ++++R+++ LET + L R G TLT Sbjct: 1 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + ++ + + SG +RI G N L L YPD+ Sbjct: 61 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P Q L+ R+LV + YA YL+ S Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTLKS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYCV 236 ++L++H LI + +ED ++ + P IS +V+S L ++ Sbjct: 180 PEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVR 228 Query: 237 LGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +L +I +P+LV ++ D VI ++ + Y E+ + ++ A I Sbjct: 229 AGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281 >gi|254512192|ref|ZP_05124259.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] gi|221535903|gb|EEE38891.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] Length = 297 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 10/283 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++ F VA++GS + AA L SQ ++ RQ+ LE E+G+ LF RHARGLTL+E G Sbjct: 9 DWSLIQSFLAVAQTGSLSAAARMLGRSQPTLGRQVHALEEELGVSLFDRHARGLTLSEVG 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + ++Y + + + + G +RI ++ + +LL L P IQ Sbjct: 69 QQVLPMAQQMYAAVNALSLTAAGQAQQLEGSVRITASVFVSHHLLPPILAAIRRAEPAIQ 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+ + ++ AD A+R+ +P Q ++ + + + + AA YL+ P S Sbjct: 129 LDLVASDASENLLFREADIAVRMYRPEQ-VDIVAKHIGEVPLCFCAARSYLERAGRPASP 187 Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL +H+L+ F + I M + W A+ + C +Y +++ G GI Sbjct: 188 SELMQHDLVGFDANEEIINAMRNKGWPASRE----SFATRCDNQTTYWELIRA---GCGI 240 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 I + +P + + D P ++ P+A++ T +++ Sbjct: 241 GFSQLGIAQADPAVEVLEIDAEIPVLPIWLAAPQAMRQTPRIR 283 >gi|330808859|ref|YP_004353321.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376967|gb|AEA68317.1| putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 301 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 16/285 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SFT AA L LSQS++S +S LE +G +L R++R ++ TE G +L Sbjct: 13 LMAFIAVAREKSFTRAAAHLGLSQSAVSHAVSSLERNLGTRLLARNSRSVSPTEAGERLL 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + L E P+G +RI + ++++ LK+FL YP I+++L Sbjct: 73 ATVGPRFEEIDAELLALSELGESPTGTVRITASDHAIRSIISPKLKKFLPKYPGIKVELF 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 DN IDI+ D D +RL + I + R + A A Y + EP + ++L Sbjct: 133 ADNGLIDIAADRFDAGVRLGEAIAQDMIAVRIGPDMRFTAVATRRYFASSPEPETPEDLM 192 Query: 188 KHNLI-----TFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +HN I T G L P + ED L R G+ L NS + + G GI Sbjct: 193 QHNCINLRLPTHGGLWPWEFGEDGRQLNM--RVDGQ-----LIYNSIYDCLDAAIAGLGI 245 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 A +P+ I + +L+ +++D ++ YP + +G + Sbjct: 246 AYVPEDIAEPYVKAGHLIPVLKDWCPLWTGLHLYYPSRRQPSGAM 290 >gi|325921049|ref|ZP_08182929.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] gi|325548473|gb|EGD19447.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] Length = 299 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF VAR GSFT AA QL +SQS++S + LET +GI+L R R +++TE G++ Sbjct: 7 NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGAR 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L E KP+G +RI T + L + L YPD++I+ Sbjct: 67 LFETVAPRLEEIDDELSALTEFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLKIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D DI + D IRL + + M A P Y + P + Sbjct: 127 VTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPSYFVHHTIPAVPAD 186 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN I T G L+P E V R G+ N +I++ + G G Sbjct: 187 LAQHNCIGLRLPTHGGLLPWDFEKDGREVKV-RVDGQ-----WTFNGSSAILRAALAGGG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +A LP+ +V ++ L R+++D P Y YP +++ LK Sbjct: 241 LAFLPETMVLEHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSSALK 287 >gi|304410838|ref|ZP_07392455.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307304991|ref|ZP_07584741.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|304350735|gb|EFM15136.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306912393|gb|EFN42817.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 313 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 15/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L ++++++SR+I+ LE + G +L +R R L LTE Sbjct: 1 MDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + +++ L++ + +L G L+I I+LGQ L +FL LYPDI Sbjct: 61 GSSYYNRINKILTDLQSAENQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ L N+ +D+ + D ++ + L LV H A+P YL P Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-GDTRLQSYALVNAHKSLMASPAYLAEHGTPKV 179 Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L KH I + K + W+ + EP ++ L VN+ + + G Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGKTWI------VAEP-MTQLTVNNVTLAREAAIAG 232 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI +P I + + L+ +++D V YP+ K + F FI+ Sbjct: 233 LGITAVPSIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIY 288 >gi|217971427|ref|YP_002356178.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217496562|gb|ACK44755.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 337 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 13/284 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS + Sbjct: 11 VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +E+T+ +L PSG+L+IA I G LL L +P I + L+L Sbjct: 71 CRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + IDI + D AI + P+ S+LI R L M A+P YL + ++ KH Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182 Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 L F + C + E + VN+ +++Q + G G A LP+ Sbjct: 183 PAELAAFNRINHPCANSETLTHARSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 V ++ LV ++ + +++VY K K+K N Sbjct: 243 EVHKYLESGQLVPLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286 >gi|186473446|ref|YP_001860788.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195778|gb|ACC73742.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 334 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 143/286 (50%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLLHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP+GKLRI +G+ L+ L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPNGKLRIDMPGSIGRLLVIPALCEFHTKYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ AAP Y + P ++ +L+ Sbjct: 127 LSDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPAYFERAGIPQTLDDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + + + D+++L + I S + VN + + + G G+ P + Sbjct: 186 QHKAVNYFSSRTGRVMDWSFLVE-GKEIEVKMKSVVSVNDADAYVTCGLEGFGLIQPPLF 244 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V + LV ++ D+ + YP + + K++ F ++I Sbjct: 245 MVLPHLRSGQLVEVLPDLKPLPMPISAVYPHSRHLSSKVRVFVDWI 290 >gi|107099150|ref|ZP_01363068.1| hypothetical protein PaerPA_01000159 [Pseudomonas aeruginosa PACS2] Length = 306 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSFT AA+ L LS + +SR IS LE + +L +R R L LTE G + Sbjct: 1 MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E + ++P G+LR+ + + +GQ+ L + + L+PD+ I+L Sbjct: 61 ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I + + S + ++L +IH A+P YL+ P S+ +L+ Sbjct: 121 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + D P E W+ ++ GE +S VN + Q GIALL Sbjct: 181 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 234 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y+ N L+R++ T+Y YP R ++ K R W Sbjct: 235 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 279 >gi|296386647|ref|ZP_06876146.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 306 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSFT AA+ L LS + +SR IS LE + +L +R R L LTE G + Sbjct: 1 MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E + ++P G+LR+ + + +GQ+ L + + L+PD+ I+L Sbjct: 61 ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I + + S + ++L +IH A+P YL+ P S+ +L+ Sbjct: 121 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + D P E W+ ++ GE +S VN + Q GIALL Sbjct: 181 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 234 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y+ N L+R++ T+Y YP R ++ K R W Sbjct: 235 PSYVAAAALRNGELLRVLPGHAMHERTIYALYPS-----------RRYLDAKIRTW 279 >gi|299534162|ref|ZP_07047513.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298717809|gb|EFI58815.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 303 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 7/292 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D++ L VF VA SFT AAEQL L++S +S + LE ++G +L R R + L+ Sbjct: 1 MDFNALHVFTRVAELSSFTLAAEQLGLTKSRVSTVVQQLEKQLGTRLLQRTTRHVRLSAD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + E+ LE Q Q ++ G LRI L ++++ L EFL +P + Sbjct: 61 GEQFLERSKELMADLEQLQAMFQPAASGLRGSLRIDMPNSLARDVVIPKLPEFLSAHPLL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ +D+ + DC +R+ P+ + LI R + + M A+P YL+ P + Sbjct: 121 EVGISTSDRRVDVVQEGFDCVVRI-GPLADTDLIARTIGAMEMCNLASPAYLERHGTPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241 + +L +H +I + + + + W + I P S L VN + C+ G G+ Sbjct: 180 LADLSRHRIIHYANQLGR--HGAGWEYQRGKEIALHPVRSALVVNGTDAYQTACLAGLGL 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + D LV +M D V YP ++ AF N+I Sbjct: 238 IQAPVRGARHLLDQGLLVEVMRDFRAAPMPVSLLYPHRRHIAPRVTAFLNWI 289 >gi|15598073|ref|NP_251567.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107102426|ref|ZP_01366344.1| hypothetical protein PaerPA_01003488 [Pseudomonas aeruginosa PACS2] gi|218890924|ref|YP_002439790.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235864|ref|ZP_04929187.1| hypothetical protein PACG_01807 [Pseudomonas aeruginosa C3719] gi|254241542|ref|ZP_04934864.1| hypothetical protein PA2G_02242 [Pseudomonas aeruginosa 2192] gi|296388636|ref|ZP_06878111.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|9948967|gb|AAG06265.1|AE004714_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126167795|gb|EAZ53306.1| hypothetical protein PACG_01807 [Pseudomonas aeruginosa C3719] gi|126194920|gb|EAZ58983.1| hypothetical protein PA2G_02242 [Pseudomonas aeruginosa 2192] gi|218771149|emb|CAW26914.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 297 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 150/296 (50%), Gaps = 10/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA +GSFT AA+ L + ++++S + LE ++G +L +R R + LT GS Sbjct: 5 DSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + + S + SG+L++ + + L+ L EF +PDI+++ Sbjct: 65 VLERCRHLLEDMEELESLFHDGS-RASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC +R+ + + +SSL+ R+L + + A+P YL+ EP + + Sbjct: 124 LGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD+H + + P W D R + S + VN+ S + C+ G G+ + Sbjct: 183 LDRHWAVNYAS--PSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQI 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 P Y V+++ L ++ + Y YP + +++AF +++ L+AR Sbjct: 241 PAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296 >gi|218888904|ref|YP_002437768.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254243267|ref|ZP_04936589.1| hypothetical protein PA2G_04075 [Pseudomonas aeruginosa 2192] gi|126196645|gb|EAZ60708.1| hypothetical protein PA2G_04075 [Pseudomonas aeruginosa 2192] gi|218769127|emb|CAW24887.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 312 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSFT AA+ L LS + +SR IS LE + +L +R R L LTE G + Sbjct: 7 MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E + ++P G+LR+ + + +GQ+ L + + L+PD+ I+L Sbjct: 67 ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I + + S + ++L +IH A+P YL+ P S+ +L+ Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + D P E W+ ++ GE +S VN + Q GIALL Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y+ N L+R++ T+Y YP R ++ K R W Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 285 >gi|34499543|ref|NP_903758.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34105393|gb|AAQ61748.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 320 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 143/297 (48%), Gaps = 15/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF A +GSF+ AA +L +S ++IS+ I+ LE E+ ++LF R R LTLTE G + + Sbjct: 4 LMVFMTTAENGSFSDAARKLGVSPAAISQSIARLEQELEVRLFNRTTRQLTLTEDGRRFY 63 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L++ +L+ S +P+G LR++ G+ + + EF YP +++ Sbjct: 64 AQCRGPVNNLDSAINQLKASRDEPAGHLRVSMPNSFGRRFILPIMGEFCERYPKVRVFFG 123 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD+ D+ D D +R + S ++ R L + ++ A+P Y P S +EL Sbjct: 124 LDDHFSDLIEDGYDVGVRTGM-MPDSRMVARNLAQMPLYVVASPEYWDQHGRPSSPEELS 182 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGIA 242 ++ I F P F W DR GE RI +N ++ + LG G+A Sbjct: 183 GYDCINF--QFPTSGRLFKW--EFDRK-GE-RIPLEVNGTYTLNDMEAVAELARLGMGVA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP + V + L ++ D+++ ++Y C+P + + F +F+ K D Sbjct: 237 QLPGHEVVHLIRSGELEPVLTDMVSLERSIYICFPHRDHIAPRTRVFVDFVVEKLAD 293 >gi|120597235|ref|YP_961809.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1] gi|146294586|ref|YP_001185010.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120557328|gb|ABM23255.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1] gi|145566276|gb|ABP77211.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] Length = 342 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 147/294 (50%), Gaps = 33/294 (11%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS + Sbjct: 30 VFATIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 89 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +++T+ +L PSG+L+IA + G LL + L +P I + L++ Sbjct: 90 CRKVISIVDSTEQKLNNLKGIPSGELKIAAPVGFGGGLLSEPFQYLLATHPQISLNLVMQ 149 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLSIQEL 186 + IDI D D AI + P+ S+LI R L M +P YL N + P + Sbjct: 150 DGPIDIVNDGIDLAICI-GPLSDSNLIARHLADWRMLLCTSPDYLPMHHNIKHPSELAAF 208 Query: 187 DK--HNLITFGDLIP-----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ HN T G+L+ +C E + RIS VN+ +++Q + G Sbjct: 209 NRINHNY-TKGELLTHHPSLECFE-----------LTGQRIS---VNNMQTLIQLTLDGL 253 Query: 240 GIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 G A LP DY+ D LV ++ + +++VY + K+K N Sbjct: 254 GYAALPEPEVLDYL--DKGVLVPLLPEWSFNTYSVYSVTSARDRQPAKVKEALN 305 >gi|254501340|ref|ZP_05113491.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222437411|gb|EEE44090.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 319 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 15/290 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V SF + L++S+ + ++ LE G +L R R ++LT +G L+R Sbjct: 11 IFMSVIDKNSFVAGGKAFGLTRSTAGKAVARLEDHYGTRLLNRTTRAISLTPEGEDLYRH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ +E T+ LQ S+ P G LRIA +G+ LL ++ +L +PDIQI++ Sbjct: 71 GMQIRAAIEETETTLQNSAGTPRGTLRIAAPGAMGRKLLLSTVQRYLRDWPDIQIEISFS 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ ++ D D A+R+ LI R L+ AAP Y + P SI++L Sbjct: 131 DRVENVVADNYDLALRIGVTEPDQGLIMRTLLIDRAVLCAAPSYFADRTRPQSIEQLGPL 190 Query: 190 NLITFGDLIPK-----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +LI FG K E+ W R S L+V++ ++ + G GI LL Sbjct: 191 DLIYFGTHPEKQCWHLSEEEGVWTRVSGR-------SRLRVDNASALRDAGLAGLGIVLL 243 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P +V+D N L ++ +V S + YP+ +++ F + +F Sbjct: 244 PRLLVEDELANGQLETVLPNVSCGSIPILALYPQRKHLEPRVRKFLDLLF 293 >gi|27365341|ref|NP_760869.1| putative transcriptional regulator, LysR family [Vibrio vulnificus CMCP6] gi|320155726|ref|YP_004188105.1| cyn operon transcriptional activator [Vibrio vulnificus MO6-24/O] gi|27361488|gb|AAO10396.1| putative transcriptional regulator, LysR family [Vibrio vulnificus CMCP6] gi|319931038|gb|ADV85902.1| cyn operon transcriptional activator [Vibrio vulnificus MO6-24/O] Length = 291 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 4 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDAVNLRLLNRHARKLSLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R S + +L T E+ + SGK++I+T +L + ++ L F+ YP+I I+ Sbjct: 64 FFRECSPLLQRLTNTAEEITDECRGASGKIKISTPYNLTKRMMMPMLNGFMSQYPEINIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ + D R+ P + SSLI RK+ ++ A+P Y+ P ++ Sbjct: 124 LTTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGSVKDILVASPEYVNAHPMPTHAED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ L+ + + V+ G Q N+ + C G GI L+P Sbjct: 183 LHDHFLLKGHPLLKWTLINSKGETVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K+ + +LVRI+ D +Y Y K++ F +++ Sbjct: 238 DVMIKEYIADGSLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDYVI 286 >gi|330810041|ref|YP_004354503.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378149|gb|AEA69499.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 307 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 12/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A +GSFT AA+ ++ +++SR I LE +G +LF R R + LTE G Sbjct: 13 IELFCLAAEAGSFTAAAQLAGVTPAAVSRSIFRLEERLGSRLFVRTTRSIRLTEAGKTYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L Q E+ + PSG+LRI+ G + + L F LYP + + L Sbjct: 73 EQCRQALTQLVEAQQEMMGAQSVPSGQLRISLPTTYGHHRILPLLPAFRALYPQVSVDLH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + D AIR+R SS+I R L + A+P YL+ P +++LD Sbjct: 133 LSNRNIDFVAEGYDLAIRVRAQ-PDSSMIARLLEDAKLVVVASPDYLRKVGTPQVLEDLD 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I F +P +WL V+ GE C + L + G+G+ Sbjct: 192 EHECIQFE--LPSSGRRISWLFNVEGKEKEVFGEGGYCC--SDDVLGGVTLAKHGAGLFQ 247 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +IV+ N LV ++ S YP +++AF +F+ W Sbjct: 248 TYKFIVEQELANGQLVEVLAPFAGRSRPFTLLYPHGRYVPQRVRAFVDFLLQYREQW 304 >gi|238755698|ref|ZP_04617032.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473] gi|238706065|gb|EEP98448.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473] Length = 306 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 16/278 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F ++ GSF+ AAE ++ S +S++I LE +G +L YR R L LTE G Sbjct: 9 NDLILFALIVDCGSFSKAAEAAGMTSSVVSKRIGRLEKSLGARLLYRTTRSLRLTENGEV 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+R E+ ++ + E S + +G +R++ G+ LL + EF +P+++I+ Sbjct: 69 LYRHAREISANIQAALYAVSERSDELTGAIRMSVPTISGELLLSECVAEFCAQHPNLKIE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ +D+ + D AIR + SSLI R ++ +P YL+ EP S ++ Sbjct: 129 MRLENRFVDLVNEGIDLAIRT-GTMPDSSLIARPILDSRWVIVCSPGYLEQQPEPTSAKD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L HN +T+ + NWL + +P G I LQVN LS I + + G Sbjct: 188 LLNHNCLTY---TYQESGTANWL--MKQP-GSNEIYELQVNGNLSVNNARAIRKAVISGH 241 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA++P +V + + LV I+ + VY YP Sbjct: 242 GIAMVPRCMVYEDIQDGKLVEILAGHCSKVLGVYAVYP 279 >gi|254505376|ref|ZP_05117523.1| transcriptional regulator [Vibrio parahaemolyticus 16] gi|219551493|gb|EED28471.1| transcriptional regulator [Vibrio parahaemolyticus 16] Length = 304 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 120/243 (49%), Gaps = 6/243 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSF+ AA L ++ SS++R I LE ++ LF R R L LT++G H Sbjct: 5 IRVFNQVVESGSFSQAANALSMAPSSVARNIDNLEAKLQTTLFKRSTRQLVLTDEGRYFH 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++++S +P G LRI+ G L + FL YP +QI+L Sbjct: 65 HQALSLVEEADALVNQMKQSPSQPQGLLRISAFESFGNVFLAPLIPRFLAQYPKVQIELE 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN +D++ D D AIR+ P + S L RKL+T A+P YLK +L Sbjct: 125 LDNHVVDLNSDNIDLAIRIGTP-KDSRLKARKLLTNRTVLVASPQYLKANPAITEPNDLS 183 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 HN + KC +W + + + +++ I+Q + GSG+ LL D Sbjct: 184 GHNCLLISQQRQKC----HWYFSRENERHKVQVTGNFSSRGGSPILQGALHGSGVLLLSD 239 Query: 247 YIV 249 ++V Sbjct: 240 WMV 242 >gi|194291696|ref|YP_002007603.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG 19424] gi|193225600|emb|CAQ71546.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 311 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF AAE + L +++++R I LET +G+KL +R R +++T G+ + Sbjct: 7 MQAFTRVVDVGSFARAAESMDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTNDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + L + P G L + TT L Q +L +L EF YPD++++L Sbjct: 67 ERCVRILADVEEAEQSLTRQNNSPRGTLSVDTTAGLAQLVLVPHLHEFFQAYPDLKLELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ K ID+ + D +R+ P+ +++ R++ + + YA+P YL P + EL Sbjct: 127 INGKPIDLLQEGVDVVLRVGIPL-DEAMVARRIGHVQLAFYASPIYLNRNGTPRDLTELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL-GSGIA 242 +H + F L + + W GE IS + YL C L G GIA Sbjct: 186 QHKAVNF--LSNRTGREMPWPLARGTERGEVLLPSAISTNDADVYLG----CALEGHGIA 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + + + + LV I+ D T + YP+ + K++ F N+ Sbjct: 240 RISRAMAEPYVASGRLVEILADWQTDELPISAMYPQNRHLSAKVRVFVNW 289 >gi|221197010|ref|ZP_03570057.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221203683|ref|ZP_03576701.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221175849|gb|EEE08278.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221183564|gb|EEE15964.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 317 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 6/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F + S T AA +L LS+S IS++IS LE +G++L R R + TE G Sbjct: 4 DDIHAFLLAVEQQSITEAARRLGLSKSVISKRISDLERLLGVQLLMRSTRNVVPTEAGQI 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + SE +L ++ E S G+LRI + + L + L + +F +P +++ Sbjct: 64 FYEAASESMRRLLEVAEDVAERSHGLCGELRITSPVSLTRLWLGPAIAKFAAAHPHLRVT 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D++ ++I + D AIR + + S+LI R++ + +P Y EP SI++ Sbjct: 124 VETDDRVVNIETERFDVAIRAAR-LPDSTLIARRIGSCARVVVCSPDYRAQYGEPHSIEQ 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + + P F +P + PR S N+ ++ V G GIA+L Sbjct: 183 LVGHRCLNYSTAAPSVTWSFRASGATGKPRVVSPR-SVFLSNNGETLRDAAVEGIGIAML 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P YI + + LVR++ VY YP + + KLK F Sbjct: 242 PIYIADEALRDGRLVRVLAHEAPQDEVVYAVYPRSPFTSNKLKQF 286 >gi|146340929|ref|YP_001205977.1| OprD regulatory protein [Bradyrhizobium sp. ORS278] gi|146193735|emb|CAL77752.1| putative transcriptional regulatory protein, LysR family; putative OprD regulatory protein [Bradyrhizobium sp. ORS278] Length = 297 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 7/267 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR GSFT AA +L +SQS++S + LE +G++L R R + T G +L R Sbjct: 12 FLAVAREGSFTRAAARLGISQSALSHSLRNLEARLGVRLLARTTRSVAPTAAGERLLRSI 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++ET L E KP+G +RI ++L L++ L +YPDI+++++ D Sbjct: 72 GPRFDEIETELAGLSELRDKPAGTIRITAGEHAADSVLWPALRKLLPVYPDIKVEVVTDY 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI + D +RL + + + R + M +P Y P Q+L +HN Sbjct: 132 GLTDIVAERFDAGVRLGEQVAKDMIAVRIGPDLRMAVVGSPAYFAVRARPRRPQDLTEHN 191 Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I +P + W R + L N+ M G G+A LP+ V Sbjct: 192 CINI--RLPTLGGIYAWEFEKRGRTLKVRVDGQLVFNNITMRMNAVRAGLGLAYLPEDQV 249 Query: 250 KDN---PNLVRIMEDVITPSFTVYFCY 273 +D+ LVR++ED P F Y Y Sbjct: 250 RDDLAKGKLVRVLEDWCAP-FAGYHLY 275 >gi|170699349|ref|ZP_02890396.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170135721|gb|EDT04002.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 330 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 149/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++I+ LE ++G +L +R R +T+TE G + Sbjct: 31 DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRMTVTEAGER 90 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G++++ L +F YP + ++ Sbjct: 91 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPTLLDFSARYPQLNVR 150 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L T H A+P YL P ++ + Sbjct: 151 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRTLAD 209 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233 L H+ + + D P G R+ + ++V LS +Q Sbjct: 210 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 255 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + + L R++ D I P+ ++ YPE + + K++ +F+ Sbjct: 256 WALAGRGIVLRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFL 314 >gi|315269548|gb|ADT96401.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 337 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 13/284 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS + Sbjct: 11 VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +E T+ +L PSG+L+IA I G LL L +P I + L+L Sbjct: 71 CRKVIAIVENTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + IDI + D AI + P+ S+LI R L M A+P YL + ++ KH Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182 Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 L F + C + E + VN+ +++Q + G G A LP+ Sbjct: 183 PAELAAFNRINHPCANSETLTHARSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 V ++ LV ++ + +++VY K K+K N Sbjct: 243 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286 >gi|37522120|ref|NP_925497.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC 7421] gi|35213120|dbj|BAC90492.1| LysR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 316 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 139/286 (48%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F +GSF+ A ++ +Q ++S+QI+ LE +G +L R R L TE+G + + Sbjct: 7 MRSFVRAVETGSFSAVAREMATTQPTVSKQIAALEEHLGARLLVRSTRRLGPTEEGERYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R V +E + ++ S+ +P G+LR++ + GQ + +KEFL YPDI++ L Sbjct: 67 RQCRRVLEAIEEAEASVR-SAERPFGRLRVSCPVAFGQYRIVPRVKEFLDRYPDIELDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ A+ AIR+ ++ SSL+ ++ T + Y EP ++++L Sbjct: 126 MTDGFVDLIEAGAELAIRI-GLLEDSSLVAHRIGTTRRVTVGSAAYFAGAGEPRTLEDLT 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +HN + + L F + P+ Q N+ +I + + G G+A+ P + Sbjct: 185 RHNCLVYTHLATGNTWSFE---SQSGPVQVKVRGNFQCNNSAAIREAVLAGLGVAVSPVW 241 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D L ++ D P ++ Y + +++ F +F+ Sbjct: 242 LFGEDLDRGVLQVVLHDFQPPPLPIHAVYLKDRYQPARVRCFVDFL 287 >gi|126172731|ref|YP_001048880.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|153002350|ref|YP_001368031.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|160877074|ref|YP_001556390.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|217974937|ref|YP_002359688.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|125995936|gb|ABN60011.1| transcriptional regulator, LysR family [Shewanella baltica OS155] gi|151366968|gb|ABS09968.1| transcriptional regulator, LysR family [Shewanella baltica OS185] gi|160862596|gb|ABX51130.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|217500072|gb|ACK48265.1| transcriptional regulator, LysR family [Shewanella baltica OS223] gi|315269278|gb|ADT96131.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 314 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 15/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L ++++++SR+I+ LE + G +L +R R L LTE Sbjct: 2 MDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + +++ L++ + +L G L+I I+LGQ L +FL LYPDI Sbjct: 62 GSSYYNRINKILTDLQSAENQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ L N+ +D+ + D ++ + L LV H A+P YL P Sbjct: 122 TIEAELTNRKVDVIEEGIDLLFQIADS-GDTRLQSYALVNAHKSLMASPAYLAEHGTPKV 180 Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L KH I + K + W+ + EP ++ L VN+ + + G Sbjct: 181 PQDLAKHKAIRLQSAHIEGAWKLFDGKTWI------VAEP-MTQLTVNNVTLAREAAIAG 233 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI +P I + + L+ +++D V YP+ K + F FI+ Sbjct: 234 LGITAVPSIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIY 289 >gi|187924230|ref|YP_001895872.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715424|gb|ACD16648.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 309 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 140/303 (46%), Gaps = 20/303 (6%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + + V + GSF A E L +SQS +SR ++ LE +GI+LF R R + Sbjct: 1 MPFDERMLNGMGVLTAIVDCGSFAAAGEALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + LE + + G+LR+ + +L L F+ Sbjct: 61 TLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+Q++LI ++ D+ D D AIR P S+LI RKL+ + AAP YLK Sbjct: 121 KHPDLQLELITRDQLGDLVGDGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179 Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLS 230 P + EL+ KH I F D P F+W + G +IS L VN + Sbjct: 180 GHPTTPAELENGKHVCIKFRD--PLTGYPFSW----EFHRGRKKISIAPQGRLTVNDVGT 233 Query: 231 IMQYCVLGSGIAL---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + C G G+A L + + LV + D + +Y YP K++AF Sbjct: 234 LHSVCTAGQGVAQILSLGTESLMASGKLVELFPDWGDEVYPLYALYPSRHHPPAKVRAFY 293 Query: 288 NFI 290 +FI Sbjct: 294 DFI 296 >gi|114763061|ref|ZP_01442491.1| transcriptional regulator, LysR family protein [Pelagibaca bermudensis HTCC2601] gi|114544385|gb|EAU47393.1| transcriptional regulator, LysR family protein [Roseovarius sp. HTCC2601] Length = 300 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 142/296 (47%), Gaps = 16/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +L++F A GSF A +L +S +S++R I+ LE + ++LF R R LT Sbjct: 1 MDSTELKIFIATAEEGSFAGAGRKLQISPASVTRAIAALEARLEVRLFTRTTRQCRLTLD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + +LE + E++ + P+G LR+A + G+ + + F YP I Sbjct: 61 GERFLERCAPLVSELEDAEDEIRTGRLGPNGALRVAAPLSFGRRQIAPLVTAFRRKYPQI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL L ++ D+ DCA+R+ +P + I R+L+ AAP YL+N P Sbjct: 121 SVQLTLSDESDDLLWREYDCALRVGRPTK-GEFITRRLLKARRVVCAAPLYLENRAAPQV 179 Query: 183 IQELDKHN---LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H LI G L+ + M + + V R + P + L NS + + G Sbjct: 180 PDDLAEHRGIVLIRDGQLLDQWMFEID---GVMRSVSVP--ATLASNSGEVTQSWALHGE 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290 G+ L + V+++ R+ME + P ++V + YP + ++F +F+ Sbjct: 235 GVVLKSIWDVQEDLAEGRLME--LLPDYSVDNADIFLVYPARRYVPSRTRSFIDFL 288 >gi|330821241|ref|YP_004350103.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327373236|gb|AEA64591.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 301 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 140/299 (46%), Gaps = 13/299 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+ F + SGS T AAEQL + S +SR ++ LE ++G+ L R R LT Sbjct: 1 MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G L ++ +E + + VKP+G+LR+ + + NL F YP Sbjct: 61 DEGELLLTRARDILQSVEEAETAVSLGRVKPAGRLRVDAATPFMLHAIVPNLPAFTARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DIQ++L + + +D+ D AIR+ + S+L R L +H A+P YL P Sbjct: 121 DIQLELTNNERFVDLIEQRIDIAIRI-GTLPDSTLHARALGACPLHILASPAYLAEHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239 S+ +L +H L+ F D+ +P GE I S +++ LG Sbjct: 180 RSVADLKRHKLLGFSDIETLNRWPLRRRGAGGQPDGEGLVIEPAHTASSGETLRHLALGG 239 Query: 240 -GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L D++ + P L +M D P VY+ + AL TG+++ F +F+ Sbjct: 240 LGIVCLSDFMSAADIAAGRLVPLLGELMSDYRQPINAVYYRH-AAL--TGRVQGFLDFL 295 >gi|17988168|ref|NP_540802.1| LysR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23500975|ref|NP_697102.1| LysR family transcriptional regulator [Brucella suis 1330] gi|161618049|ref|YP_001591936.1| transcriptional regulatory protein [Brucella canis ATCC 23365] gi|254700873|ref|ZP_05162701.1| transcriptional regulatory protein [Brucella suis bv. 5 str. 513] gi|254705239|ref|ZP_05167067.1| transcriptional regulatory protein [Brucella suis bv. 3 str. 686] gi|256045849|ref|ZP_05448724.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060201|ref|ZP_05450379.1| transcriptional regulatory protein [Brucella neotomae 5K33] gi|256368526|ref|YP_003106032.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|260563139|ref|ZP_05833625.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str. 16M] gi|260567294|ref|ZP_05837764.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40] gi|261324177|ref|ZP_05963374.1| transcriptional regulator [Brucella neotomae 5K33] gi|261751385|ref|ZP_05995094.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755949|ref|ZP_05999658.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265992265|ref|ZP_06104822.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|294851465|ref|ZP_06792138.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|17983928|gb|AAL53066.1| transcriptional regulatory protein, lysr family [Brucella melitensis bv. 1 str. 16M] gi|23346833|gb|AAN29017.1| transcriptional regulator, LysR family [Brucella suis 1330] gi|161334860|gb|ABX61165.1| transcriptional regulatory protein [Brucella canis ATCC 23365] gi|255998684|gb|ACU47083.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|260153155|gb|EEW88247.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str. 16M] gi|260156812|gb|EEW91892.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40] gi|261300157|gb|EEY03654.1| transcriptional regulator [Brucella neotomae 5K33] gi|261741138|gb|EEY29064.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745702|gb|EEY33628.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|263003331|gb|EEZ15624.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|294820054|gb|EFG37053.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 297 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|254246719|ref|ZP_04940040.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124871495|gb|EAY63211.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 294 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G + Sbjct: 9 AFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + S+ +P GKLR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR P+ SSL+ R+L A P YL P + +EL+ H Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTPRELEAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + P + +W D G+P + + N+ ++ + G GI +PD+ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADD--GKPLTLRTAMTCNNMEALRGAVLAGLGIGYMPDF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +D + LV +++D +P + + + KL+ F +F+ Sbjct: 243 LARDALEHGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|49085138|gb|AAT51255.1| PA0159 [synthetic construct] Length = 313 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSFT AA+ L LS + +SR IS LE + +L +R R L LTE G + Sbjct: 7 MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E + ++P G+LR+ + + +GQ+ L + + L+PD+ I+L Sbjct: 67 ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I + + S + ++L +IH A+P YL+ P S+ +L+ Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + D P E W+ ++ GE +S VN + Q GIALL Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y+ N L+R++ T+Y YP R ++ K R W Sbjct: 241 PGYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 285 >gi|330821834|ref|YP_004350696.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373829|gb|AEA65184.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 307 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 5/290 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F V +GSF A L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 6 DLEAWAIFARVVETGSFAKTANLLGISQPTVSKAIARLEQRLGTMLLYRTSRKLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L ++ E + E +++P G +R+ + G L L FL YP + Sbjct: 66 ELLRDRAVQLLADAEMIENEASAQALEPHGTVRLNAPMSFGLRHLSPLLPAFLERYPGVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+L ++ IDI D AIR+ + SSL R+L +H A+P YL+ P Sbjct: 126 VDLVLTDQIIDIVSSGCDVAIRIAD-LSDSSLRARRLCAVHRPLVASPEYLERHGRPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++LD+H + + +L F + + D+ P ++ N+ I+ + G G+AL Sbjct: 185 RDLDRHVSMIYTNLPSPDYWRFRHVDS-DQEFAVPVRGRMRTNNADVILPALLAGQGLAL 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V D + L R+M D V P + ++ +F+ Sbjct: 244 QPEFLVWDALKSGALERVMCDWRIADINVNLVTPPGMLRAARVTVLLDFL 293 >gi|160877344|ref|YP_001556660.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|160862866|gb|ABX51400.1| transcriptional regulator, LysR family [Shewanella baltica OS195] Length = 333 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 13/284 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS + Sbjct: 7 VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 66 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +E T+ +L PSG+L+IA I G LL L +P I + L+L Sbjct: 67 CRKVIAIVENTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + IDI + D AI + P+ S+LI R L M A+P YL + ++ KH Sbjct: 127 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 178 Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 L F + C + E + VN+ +++Q + G G A LP+ Sbjct: 179 PAELAAFNRINHPCANSETLTHARSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 238 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 V ++ LV ++ + +++VY K K+K N Sbjct: 239 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 282 >gi|157372088|ref|YP_001480077.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323852|gb|ABV42949.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 306 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 144/278 (51%), Gaps = 16/278 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F ++ GSF+ AAE ++ S +S++I LE +G +L YR R LTLTE G Sbjct: 9 NDLILFALIVDCGSFSKAAETAGITSSVVSKRIGRLEKSLGARLLYRTTRSLTLTENGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+R E+ K + + E S + +G +R++ G+ LL ++ EF L+P+++++ Sbjct: 69 LYRQAKEISAKTQEALNVISEHSDELTGIIRMSVPTISGELLLSESVAEFCALHPNLKVE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ D+ + D AIR + SSLI R ++ +P YL+ EP S + Sbjct: 129 MRLENRFADLVNEGIDLAIR-TGTLPDSSLIARPILNSRWVIVCSPSYLQQYSEPQSAGD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L +HN +T+ + D NWL + +P G +I LQV+ LS I + + G Sbjct: 188 LLEHNCLTY--TYQESGTD-NWL--MKQP-GSNKIYELQVSGNLSANNARAIRKAVIAGY 241 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 GIA++P +V ++ +V ++ +Y YP Sbjct: 242 GIAMVPRCMVYEDLQEGAMVEVLSGHCGKVLGIYAVYP 279 >gi|221211513|ref|ZP_03584492.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221168874|gb|EEE01342.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 300 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 29/307 (9%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + V V +GSF A E + L+Q ++SR ++ LE +GI++F R AR + Sbjct: 1 MRFDSRLLSGIGVLSAVIEAGSFARAGEAIGLTQPAVSRAVARLEERIGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ + K G+LR+ G +L L FL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKEKVRGRLRVNVDGTFGHYVLAPKLAAFLE 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +++ + ++ D+ D D A+R P + SS R L+ + A+P Y+ Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVN 226 EP +EL D H + D P F W A R L VN Sbjct: 180 GEPRHPRELADGHRCVLIRD--PVTGRPFEWEFHRGGEVVPFAAAGR---------LMVN 228 Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 S++ C+ G+G+A L + +D L ++ D +F +Y Y + + K+ Sbjct: 229 DTGSLLGACLGGAGVAQLLELYARDIVSEGRLTLLLPDWTDETFPLYAYYHASNLVSAKV 288 Query: 284 KAFRNFI 290 + F +F+ Sbjct: 289 RVFLDFV 295 >gi|167578918|ref|ZP_02371792.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 334 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLR+ +G+ ++ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I+ L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQTIEALA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 +H + + + W +D E +++ L VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIEWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFGLIQPPL 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N L ++ + YP + + K++ F +++ Sbjct: 244 FMVLPHLRNGTLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWV 290 >gi|221199169|ref|ZP_03572213.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221206634|ref|ZP_03579646.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221173289|gb|EEE05724.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221180454|gb|EEE12857.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 294 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +++ + EL +S P G+LR++ TI L+ L F+ YP+I++ L Sbjct: 69 CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLMLPVLAGFMSAYPEIELDLDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R +P S L R L H A+P YL+ P + +L + Sbjct: 126 SDRLVDVVDEGFDAVVRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAR 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W V R P + V N+ + + + + G GIA LP++ Sbjct: 185 HRCLHY--RFPATGKLEIWPLPVPRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLPEF 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ D L +++D + VY +P T KL+AF +++ Sbjct: 243 FVREPIDAGTLRTVLDDYVASRTPVYVLWPSGRHPTPKLRAFVDYL 288 >gi|163842336|ref|YP_001626740.1| LysR family transcriptional regulator [Brucella suis ATCC 23445] gi|163673059|gb|ABY37170.1| transcriptional regulator, LysR family [Brucella suis ATCC 23445] Length = 297 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLTGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|308050159|ref|YP_003913725.1| LysR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632349|gb|ADN76651.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM 9799] Length = 303 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 141/287 (49%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +SGSF+ AA +L SQ+S+S++++ LE E+G+KL R +R LT +G+ + Sbjct: 7 MRVFVRVVQSGSFSAAARELLTSQASVSKKVATLEAELGVKLLRRTSRDHALTPEGADYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +L+ + ++ V+P G LRI + +L + EFL YPDIQ+ + Sbjct: 67 HHCVNWLAELDEVEGRIRAQGVQPKGNLRITAPYPFARQILAPVMTEFLERYPDIQLDFL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ D+ + D AIR ++ SSLI R L M A+P YL P + L Sbjct: 127 VSDRRSDLQAEGIDIAIRAGH-LEDSSLIVRHLFDNPMLLVASPDYLSRQGVPETPDALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I + + F + T+ P+ P Q +S ++ + G GI LP Sbjct: 186 QHQCIVYSPVRAVHSWRFQYQGNTIVVPVRGP----FQSDSGDMNLEAAIAGMGITELPV 241 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V+ + LV+++ + YP++ K++ F +F+ Sbjct: 242 WMVEQALSDGRLVQVLASYQADNVPFNALYPQSRHVPLKVRCFIDFL 288 >gi|37680602|ref|NP_935211.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37199350|dbj|BAC95182.1| transcriptional regulator [Vibrio vulnificus YJ016] Length = 295 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T + + + ++I+R+I LE V ++L RHAR L+LTE G + Sbjct: 8 DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDAVNLRLLNRHARKLSLTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R S + +L T E+ + SGK++I+T +L + ++ L F+ YP+I I+ Sbjct: 68 FFRECSPLLQRLTNTAEEITDECRGASGKIKISTPYNLTKRMMMPMLNGFMSQYPEINIE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ + D R+ P + SSLI RK+ ++ A+P Y+ P ++ Sbjct: 128 LTTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGSVKDILVASPEYVNAHPMPTHAED 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ L+ + + V+ G Q N+ + C G GI L+P Sbjct: 187 LHDHFLLKGHPLLKWTLINSKGETVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 241 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K+ + +LVRI+ D +Y Y K++ F +++ Sbjct: 242 DVMIKEYIADGSLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDYVI 290 >gi|15595357|ref|NP_248849.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9945991|gb|AAG03549.1|AE004454_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 312 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SGSFT AA+ L LS + +SR IS LE + +L +R R L LTE G + Sbjct: 7 MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E + ++P G+LR+ + + +GQ+ L + + L+PD+ I+L Sbjct: 67 ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I + + S + ++L +IH A+P YL+ P S+ +L+ Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + D P E W+ ++ GE +S VN + Q GIALL Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y+ N L+R++ T+Y YP R ++ K R W Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 285 >gi|167622645|ref|YP_001672939.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352667|gb|ABZ75280.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 303 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 147/294 (50%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA ++ + +S+ISR+++ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + S + ++E + ++ + SG LRIA + Q L+ FL LYP+++ Sbjct: 63 ALFFQHCSSISDEIEAAKATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D+ + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKIHGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L +H+ I G + P + R + +VNS + + Q+ + Sbjct: 182 QDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSAVMVKQFVMDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + + K+ + +LV ++++ +F VY Y + + AF +F Sbjct: 234 FGIAMLSNSVCKNELASGSLVPLLQEWPMEAFKVYGVYSSRRQLATNISAFLDF 287 >gi|212710920|ref|ZP_03319048.1| hypothetical protein PROVALCAL_01989 [Providencia alcalifaciens DSM 30120] gi|212686617|gb|EEB46145.1| hypothetical protein PROVALCAL_01989 [Providencia alcalifaciens DSM 30120] Length = 318 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 11/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ L +F + GS T AA+ LH+++S+IS+++ LE GI+L R R L LTE G Sbjct: 5 DYALLPIFIAIVEQGSLTKAADSLHMTKSAISKKLMALEASTGIRLITRSTRHLQLTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + ++ L S G L+I+ G L L EFL +P + Sbjct: 65 ELYYAYLKKAHRAIDDGNAALSRYSGAVDGTLKISAPTVFGHLHLTALLPEFLKCWPQLN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +L+ D+K +D+ + D AIR+ + ++ SSL+ R L H A+P +L+ P ++ Sbjct: 125 AELVFDDKLVDLVGEGFDMAIRIGE-LKDSSLVSRTLSPCHSVLCASPIWLEEHGSPQNL 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL HN + + F + R P G R N+ L++ Q + G G+ Sbjct: 184 DELAGHNCLLYSYYQAGQTWLFTHQGKMVRFTPTGNFR-----ANNSLALHQAALQGLGV 238 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +I + L+ ++ + P +Y YP K+ AF +F+ Sbjct: 239 CQLPQFIAAPDILAGRLITVLPEYHLPQHHIYAVYPNREFLPKKVSAFLDFL 290 >gi|171316742|ref|ZP_02905954.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171098092|gb|EDT42907.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 300 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 144/298 (48%), Gaps = 11/298 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + V V +G+F A E + L+Q ++SR ++ LE VGI++F R AR + Sbjct: 1 MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ S + G+LR+ G +L + EFL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P++ +++ + ++ D+ D D A+R P + SS R L+ H+ A+ Y+ Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASAAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235 EP ++L D H + D P + W D + L VN +++ C Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVPFDAAGRLTVNDTGALLGAC 237 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G G+A L + +D + LV+++ + +F +Y + + + K++ F +F+ Sbjct: 238 VGGEGVAQLLELYARDILADGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFV 295 >gi|226946789|ref|YP_002801862.1| transcription regulator pirR [Azotobacter vinelandii DJ] gi|226721716|gb|ACO80887.1| transcription regulator pirR [Azotobacter vinelandii DJ] Length = 293 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 24/297 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64 + +R+F V GSFT AAE L LS+ +SR++ GLE +G +L R R L +T G+ Sbjct: 5 EDMRLFVAVVDGGSFTAAAEALGLSKQFVSRRLMGLEARLGARLLNRSTRRLAVTPLGAL 64 Query: 65 ---KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 + R+ +V E Q LQ+ + P G LR++ + G L L FL YP+ Sbjct: 65 YCERARRILDDVA---EAEQAILQQRAT-PRGTLRLSAPMSFGTLHLGRLLPGFLERYPE 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D+ + D A+R+ + + S+LI R L + M A+P YL+ P Sbjct: 121 VAVELELSDRRVDLLEEGYDMAVRIGE-LADSTLIARALAPLRMVTCASPAYLQRRGAPQ 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC---LQVNSYLSIMQYCVL 237 + + L +H+ + +G + W D G P R+ +VN+ + + Sbjct: 180 TPEALREHDCLLYGH-----GKLVVWTYWRD---GRPERVEVRGRYRVNNGELVRDAALA 231 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+A LP +IV L+ ++E P VY YP+ + + ++AF ++++ Sbjct: 232 GLGLAWLPTFIVGPELTAGTLLPVLEAFQGPPAKVYAVYPQHRQTSALIRAFTDYLY 288 >gi|326386032|ref|ZP_08207656.1| transcriptional regulator, LysR family [Novosphingobium nitrogenifigens DSM 19370] gi|326209257|gb|EGD60050.1| transcriptional regulator, LysR family [Novosphingobium nitrogenifigens DSM 19370] Length = 310 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 128/284 (45%), Gaps = 24/284 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D+LR F VAR SFT AA QL +SQ +SR I+ LE +G++L R R + T G Sbjct: 5 DHDQLRAFLAVARERSFTRAAAQLGMSQPVLSRTIAALEARLGVRLLNRTTRSVAPTLAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + L ES +P+G +R+ D + ++ L L YPDI+ Sbjct: 65 ERLACGIAPHFEAIAGELAALSESFTRPAGLVRLTADEDAAEQVVWPRLARILPAYPDIE 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH------MHAYAAPHYLKNC 177 +++++DN DI D IR S +I+R ++ + M AAP Y+ Sbjct: 125 VEIVVDNGLTDIVAAGLDAGIR------SGDIIERDMIAVPIGPDLTMTMVAAPSYMAGR 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC---LQVNSYLSIMQ 233 P Q+L +H I +P + W L R E R+ + N+ ++Q Sbjct: 179 TPPARPQDLTRHRCINI--RLPTHGAVYAWELGQGGR---ETRVRVAGQVTFNTARLVLQ 233 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 + G GIA LP V + LV +M D P + YP Sbjct: 234 AALDGFGIAFLPAGRVAPHLADGTLVPLMTDWSEPYPGYHLYYP 277 >gi|288935131|ref|YP_003439190.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288889840|gb|ADC58158.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 296 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 148/295 (50%), Gaps = 32/295 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL- 66 L +F V GSFT AA+ L + + ++S+ I +E ++G+KL +R R L++T +G Sbjct: 5 LNIFVQVVEQGSFTRAADILQIHRPTVSKAIQQIEDDLGVKLIHRTTRKLSVTAEGEAFY 64 Query: 67 HR---VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 HR V SEV + + ++ P G+LR+ + L +L NLK F LYPDI Sbjct: 65 HRARLVLSEVNDMMASF-----SPTLPPRGRLRLDVPLALAHAILIPNLKHFQSLYPDID 119 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+ +K D+ + DC +RL + +Q SS I R+L I M AAP YL P ++ Sbjct: 120 VVLVSSDKRTDLITEGVDCLVRLGE-LQDSSFISRRLGDIRMVTCAAPSYLLQHGRPETL 178 Query: 184 QELDKHNLIT-FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCV 236 +LD+H I F D ME W T D RP+G S L NS I+ C Sbjct: 179 ADLDQHRAINFFSDHSRDVME---WKFTKDGKIVSLRPVG----SMLVDNS--DILLSCG 229 Query: 237 LGSGIALLPDYIVKDNPNLVR-IMEDVIT--PSFT--VYFCYPEALKNTGKLKAF 286 L +G+ ++ P++ +E+++T PS + V YP+ + K++ F Sbjct: 230 L-AGLGIIQATFNALAPHIASGALEEILTQYPSVSKPVSVMYPDRRYLSPKVRVF 283 >gi|190890502|ref|YP_001977044.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190695781|gb|ACE89866.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 294 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 140/289 (48%), Gaps = 10/289 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA SF AA+ L +S ++SR +S LE +G +LF R +R L LT+ G +L Sbjct: 1 MFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDS 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +Y + E + +E + +P G +R+A +D G L L +F L+P+I I L + Sbjct: 61 AARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEISIDLHMS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI D D A+R+ + SSLI R+L + AAP YL P +EL H Sbjct: 121 DAVVDIVGDGFDAALRI-AVLPDSSLIARRLTPVDRFILAAPAYLDRYGVPEHPRELAAH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + + +D L + + P S NS + ++ + G GI LP++ Sbjct: 180 HCLGYAY---RARQDVWRLRNGEGKEEVVVPSGSLRATNSEV-LVPMALRGLGIIELPEF 235 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + D + L I+ D P+ +YF P A K++ +F+ + Sbjct: 236 LAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMAR 284 >gi|254251562|ref|ZP_04944880.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124894171|gb|EAY68051.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 294 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 11/282 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L LS S++ ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGLSASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGTRFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +++ + EL +S P G+LR++ TI L+ L +F+ YP+I++ L Sbjct: 69 CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLMLPVLADFMTAYPEIELDLDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R +P S L R L H A+P YL+ P + +L + Sbjct: 126 SDRLVDVVDEGFDAVLRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAR 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W R P + V N+ + + + + G GIA LP++ Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRASRSHAPPAVPVSMVSNNAETRLCFALRGLGIACLPEF 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ D L +++D + VY +P T +L+AF Sbjct: 243 FVREPLDAGTLRTVLDDYVASRTPVYVLWPSGRHPTPRLRAF 284 >gi|194432707|ref|ZP_03064992.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012] gi|194418969|gb|EDX35053.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012] gi|332097559|gb|EGJ02538.1| hypothetical protein SD15574_0666 [Shigella dysenteriae 155-74] Length = 304 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AI + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIHA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|218683009|ref|ZP_03530610.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT 894] Length = 305 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 144/297 (48%), Gaps = 14/297 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA SF AA+ L +S ++SR +S LE +G +LF R +R L LT+ G Sbjct: 6 DFEGLAMFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +Y + E + +E + +P G +R+A +D G L L +F L+P+I Sbjct: 66 LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEIS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + + +DI D D A+R+ + SSL+ R+L + AAP YL P Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRI-AVLPDSSLVARRLTPVDRFILAAPAYLDRHGVPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 +EL H+ + + + +D L + G+ + L+ + +++ + G Sbjct: 185 RELTAHHCLGYAY---RARQDVWRLRNGE---GKEEVIVPSGSLRATNSQALVPMALRGL 238 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI LP+++ D + L I+ D + +YF P A K++ +F+ + Sbjct: 239 GIIELPEFLAHDYLVDGQLTPILPDWTLATGALYFVTPSARSRPAKIEVLSDFMMAR 295 >gi|90577525|ref|ZP_01233336.1| hypothetical transcriptional regulator [Vibrio angustum S14] gi|90440611|gb|EAS65791.1| hypothetical transcriptional regulator [Vibrio angustum S14] Length = 306 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 157/304 (51%), Gaps = 21/304 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FD + +++F V SFT AA +L L++S++SR+++ LE +G+KL R R L LT Sbjct: 8 IGFDLNTIKIFARVVEIQSFTQAAAELELTKSTVSRKVAELERYLGVKLLTRSTRQLVLT 67 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +R S + L+ +++E+ S G L + +++G+ ++ +K F+ L+P Sbjct: 68 AEGDTFYRSCSHILELLQQSELEVTASHDLICGTLNMVMPVEVGKGIIGDCIKAFMKLHP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++I L L N+ +D+ + D I++ + I+ SSLI R A+P Y++ P Sbjct: 128 NLKIHLELSNRKVDLIKEGFDIMIQVGE-IEDSSLIVRTFHHTTRVLVASPKYIEQYGLP 186 Query: 181 LSIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L IP + + + ++T ++ + E +VN+ + + C+ G Sbjct: 187 QNLSDLK----------IPHQQIRMISNVSTSNKDVLEKLPYRFKVNTLSAALDMCLEGF 236 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF-------TVYFCYPEALKNTGKLKAFRNFIFL 292 GI +P+++ ++ N +++ I PS V F YPE +L+AF +F Sbjct: 237 GITYIPEFLCRNLINEGKLIH--ILPSLYKSQIPIPVSFIYPERDLMPRRLRAFIDFTIT 294 Query: 293 KARD 296 + +D Sbjct: 295 QFQD 298 >gi|187923033|ref|YP_001894675.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714227|gb|ACD15451.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 305 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 144/296 (48%), Gaps = 7/296 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SFT +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L P+G +R+ T+ L + LL L +F YP+I + Sbjct: 64 LFYERCVRILAEVTDAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ P + SSL+ R++ + A+P YL+ EP +++ Sbjct: 124 RLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPTTLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 EL +H + + + + F + VD I + + S L VN + LG GI Sbjct: 183 ELSEHRAVNY--VSARTGRTFPFEYQVDGEIAKVSLKSVLAVNDGSVYIGAAALGHGIIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 ++V D L I+ +P + Y + +L+AF ++ AR+ Sbjct: 241 PSRFMVADLIAQGALKEILTGYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296 >gi|134291978|ref|YP_001115747.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135167|gb|ABO59492.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 297 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GHEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLRAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YL+ P S Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLERQGTPAS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 EL H + +G W VD G R +Q N+ + G Sbjct: 180 PAELAGHTCLMYGR-----ERRVGWEFRVD---GVARTFDVQGPLVANNGEVVRDAATAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP++IV D LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPEFIVGAALDGGALVPVLDAYAPAPLTLNAVFPQHREGFVTLRTFIGFL 286 >gi|330830708|ref|YP_004393660.1| LysR family transcriptional regulator [Aeromonas veronii B565] gi|328805844|gb|AEB51043.1| Transcriptional regulator, LysR family [Aeromonas veronii B565] Length = 299 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 23/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V GS++ A + +S + + + GLE +G KLF++ R TLTE G Sbjct: 7 MRIFTRVVDLGSYSAVASEEGISAQMVGKHVLGLEQWLGGKLFHKTTRQQTLTELGQLFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L T+ Q +P+G+LRIA + G + L L FL YP + + L Sbjct: 67 ARCQRVLEELALTESLTQNLLAEPAGRLRIAAPLSFGHHRLVPLLPAFLDRYPKLDLDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D AIR +P Q +LI R L+T H AAP YL + P +L Sbjct: 127 LSPRWVDLVEEGFDAAIRTLRP-QDEALIARPLLTQHYRLCAAPDYLNSHGVPRHPADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239 +H +C+ NW D E R+ S L++N + +++ + G+ Sbjct: 186 RH----------QCLHG-NWGEHERWQFVGEDGQSEEVRVASRLRINHWPALLTAALSGA 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L P V+D+ L+ +++ +P+ T+YF YP A + K+ +F+ Sbjct: 235 GITLQPAEQVRDHIAAGRLLPLLDHYQSPAKTLYFIYPAARRQVLKITLLGDFL 288 >gi|114800121|ref|YP_759389.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114740295|gb|ABI78420.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC 15444] Length = 306 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 142/290 (48%), Gaps = 27/290 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F VA +GSF+ AA L L Q ++SR+I LE +G LF R R L+LTE G + Sbjct: 5 EAMQLFVRVADAGSFSRAAADLELGQPTVSRRIQDLEASLGTTLFQRTTRALSLTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R ++ + + + E + P G LRI+ + + ++ + FL Y I+ Sbjct: 65 FYRRAVDILTEFDEAEAEARGLEHSPVGLLRISCSHSFARRVVAPAVPGFLAAYSSIRFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ D+ D+ + D A RL + ++ S L+ +KL +A+P Y+ P +++E Sbjct: 125 LVSDDSLTDLVSEGIDIAFRLGE-LRDSRLMAKKLGEAPQVLWASPEYIARHGAPQTVEE 183 Query: 186 LDKHNLITF-------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 + HN + F DL + E F A VD P + +S ++++ G Sbjct: 184 VGNHNAVVFRHNRQTVWDL-SRGNEHFE--ARVDGP--------FRASSGETLLEAAAGG 232 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 GI L P ++ + + LVR++ + PS +++ A+ +GKL+ Sbjct: 233 LGILLAPAWLASECFGDQRLVRVLPEWQGPSLSIH-----AVWTSGKLRG 277 >gi|91224808|ref|ZP_01260068.1| transcriptional regulator [Vibrio alginolyticus 12G01] gi|91190354|gb|EAS76623.1| transcriptional regulator [Vibrio alginolyticus 12G01] Length = 302 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 12/287 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G+ L R R L LTE G L+ Sbjct: 10 IRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGVTLLQRTTRTLNLTEAGKVLY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + + G +RI LG++++ + +FL+ +P + I L Sbjct: 70 KQCETALHNIDQAVMAVVDDVEDLRGDIRINCVGGYLGEDVVADIVAQFLIQHPQVSINL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K + S+ I RKL+ + M YA+P+YL+ P ++L Sbjct: 130 DFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPNYLETYGYPSHPKDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +KH +T G + E+ N + + I G+ R +V +++ + G+GI +P Sbjct: 189 EKHVCLT-GSVTRWAFENTNTKQSTEHQIRGQLRCKSGRV-----MIKAALAGNGIIRVP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + L + + PS Y +++AF +F Sbjct: 243 ALYCQQELQTGKLKEVFTNWSIPSVEFSLLYHHDRHQPKRIRAFVDF 289 >gi|117922362|ref|YP_871554.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614694|gb|ABK50148.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 320 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 15/281 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE G+ + Sbjct: 11 VFAAIAEKGSMSAAATQLNLSSSAVSQQVAKLEMDMGISLFHRNTRHLTLTEAGALFYEN 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ +E+ + +L PSGKL+IA + G LL L L +P I + L L Sbjct: 71 CIKIIKIVESAEQQLHALKGTPSGKLKIAAPVGFGGGLLSQPLAHLLAAHPQISLNLQLQ 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLSIQEL 186 + IDI + D AI + P+ S+LI R L M AAP Y+ ++ + P +Q Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARPLADWRMLLCAAPSYIPLHQSLQHPADLQGF 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 ++ I+ P+ + ++ P + VN+ +++Q + G G A+LP+ Sbjct: 190 NR---ISHSYAKPEFLTHLQTQERIELPAQR-----INVNNMQTLIQLTLDGLGFAVLPE 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 V + LV ++ + +++VY K K+K Sbjct: 242 PEVHQYLASGQLVTLLPEWSLRTYSVYSVTSARDKQPAKVK 282 >gi|149922495|ref|ZP_01910927.1| probable transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149816690|gb|EDM76182.1| probable transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 301 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 8/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L VF GSF A L LS +++S+ + LE +G++L +R R ++LTE G Sbjct: 4 FTALTVFRHAVELGSFAATARHLRLSPAAVSKNVGELEAALGVRLLHRTTRRMSLTEAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + V +L+ + L + G LR++ + L + FL +P++ + Sbjct: 64 LYYESVARVLDELDDAEGMLDAMQGETKGSLRVSAPMSLTLTCFASAIPAFLQRHPELSL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L LD++ +++ + D AIR + ++ SSL+ RK++T+ AP YL+ P + Sbjct: 124 DLRLDDRRVNLVEEGFDVAIRGTEQLEDSSLVARKVMTLAHVVCGAPDYLERRGTPTHPK 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L +H + F L E W + R + +P QV+S L++ + G G+ + Sbjct: 184 QLREHECVGF-SLAAHARE---WSFSKRGRELRQPVRGRYQVSSSLAVREALRAGLGLGM 239 Query: 244 LPDYIVKDN--PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 +P+ V+++ +R + TP S TVY YP K++AF +F+ Sbjct: 240 IPEVYVREDLAAGRLRAVLGEWTPRSATVYAVYPSKRYLVPKVRAFVDFL 289 >gi|42522567|ref|NP_967947.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39575099|emb|CAE78940.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100] Length = 312 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 148/306 (48%), Gaps = 20/306 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++R F + +SGSFT AAE L +S +SR++S LE ++G++L YR R LTE Sbjct: 17 LDLNQIRTFVKLVQSGSFTKAAEVLKQPKSRVSRRLSALEKDLGVQLIYRTTRQFQLTEM 76 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + LET E+ ES+ + SG +R+ + D+G L + EF YP + Sbjct: 77 GRIYYERARGLIEGLETLTGEVSESTAEISGVIRVTASDDMGVKHLPLIVDEFTRQYPRV 136 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L +D+ + D IR+ ++ SSL RK+ T+ A+P +L+ R Sbjct: 137 RFDLYLTQAYVDLVKESVDVGIRIGN-LKDSSLRARKIGTVRNLLVASPGFLERYRVG-- 193 Query: 183 IQELDKHNLITFGDLI--PKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 ++L K F L PK D L PI + N+ ++ Sbjct: 194 -EDLTKLAAAPFLGLTQQPKLEVVRSSDGKRLTLKTNPI-------VTANNPEMLLNLAR 245 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LG G A +P+++ KD + +V+I +++ +V P+ + + K+K F +F + + Sbjct: 246 LGKGYAFVPEFLCKDELRDGRMVQIHKNLRGDEVSVSLVSPDTKETSQKVKRFMDFAYKR 305 Query: 294 ARDWKF 299 ++ F Sbjct: 306 LKEVYF 311 >gi|222085196|ref|YP_002543726.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722644|gb|ACM25800.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 307 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 137/289 (47%), Gaps = 12/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A GSF A L LS S++ + ++ LE ++G++L R R + LTE+G H Sbjct: 7 LNAFVRSADLGSFAAAGRVLGLSASAVGKAVTNLERQLGVRLMQRSTRSIRLTEEGRLFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V LE Q L ++ P G+LR++ I + + L L EF++ YP++++ + Sbjct: 67 ERCRRVLDDLEDAQASLAQAVAVPRGRLRVSVPI-VSYHFLLPVLPEFVVRYPEVELDID 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D AIR + S L+ R L M AAP YL+ P + LD Sbjct: 126 FNDRIVDMIEEGVDVAIR-SGDLPDSRLMSRTLRPFQMLLCAAPAYLERHGVPDCPRALD 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 H I F P + NW T+ P G P + + L N+ ++ + G GI + Sbjct: 185 DHLAIRF--RFPNSGKLQNWPLTL--PDGGPELHMKTALSCNNMEALRGAVISGLGIGCM 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD++ + L +++D I + +P + K++ F +F+ Sbjct: 241 PDFLARSPLAEGKLRTVLDDHIDGPGHFHLLWPSNRHLSPKVRVFVDFL 289 >gi|90579285|ref|ZP_01235095.1| putative transcriptional regulator [Vibrio angustum S14] gi|90440118|gb|EAS65299.1| putative transcriptional regulator [Vibrio angustum S14] Length = 294 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V +GS+T A+ + + ++++R+I LE + I+L RHAR L+LTE G K Sbjct: 4 DDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEAGQK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L T + E +GKLRIA ++ + +LQ L F+L +P I IQ Sbjct: 64 FYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPTNITKVMLQPLLNAFMLEHPAISIQ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + N+ + D R+ P + S+LI R++ + A+P YLK EP Q+ Sbjct: 124 LYMSNEPDQLDPTDWDVMFRI-GPQRDSTLIARRINEVKDILVASPEYLKKNPEPKHAQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ L+ + + N G S L V + + C G GI L+P Sbjct: 183 LHDHVLLKGNPLLRWRLNNHNGETVTINERGRFEASELNV-----VRKACCAGLGITLMP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 D +++ + +++++ VY Y KL+ F +F Sbjct: 238 DVMLEKYIAAGEVTQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284 >gi|171322080|ref|ZP_02910949.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171092608|gb|EDT37915.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 294 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRQGTPET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +L H + +G W +D G R +Q N+ + + G Sbjct: 180 PADLAAHTCLMYGR-----ERRVGWEFRID---GAARTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP +IV DN LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPHFIVGAALDNGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|94497397|ref|ZP_01303968.1| transcriptional regulator, LysR family protein [Sphingomonas sp. SKA58] gi|94423260|gb|EAT08290.1| transcriptional regulator, LysR family protein [Sphingomonas sp. SKA58] Length = 297 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 14/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDWD LRVF VAR+ AA L + ++I+R++S LE +G LF LT Sbjct: 2 FDWDDLRVFLAVARARKIAPAARALGIDATTIARRLSRLEKALGADLFEMGGGERALTAS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R E++ + SG++R++ G +L + F +P I Sbjct: 62 GLTLLRHAEGAESAALAAMEEVKGQEHRLSGQVRLSVAEGFGTWMLAPGMGAFNRRHPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+ + ++ S AD A+ L +P Q L R+L +H YAAP YL P + Sbjct: 122 RLDLVTASGFLNPSNREADMAVMLARP-QRGRLTVRRLGDYRLHLYAAPAYLDRAGHPTT 180 Query: 183 IQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--G 238 +L H LI + +P+ + + ++L V+ + E ++ +N MQ ++ G Sbjct: 181 SADLRHHVLIGY---VPEFIFSPELDYLDEVEAGL-EAQLRATSIN-----MQQRMIAEG 231 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +GI +LPD+I + +P L IM D + + + + L++ ++ A ++ Sbjct: 232 AGIGVLPDFIGRRDPALTAIMTDAVEITRSFWLVMHGDLRHLARIGAVAEWL 283 >gi|313498962|gb|ADR60328.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 292 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 11/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F V GSF+ A +L++ Q ++S+Q+ LE +G +F R R L LT+QG Sbjct: 4 FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALTDQGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E+ +LE + +G LRIA + G+ + + FL +PD+QI Sbjct: 64 RFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHPDVQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L++ + D+ M+ D AIR+ ++S L+ L T YAAP YL +P Sbjct: 124 DLRLNDYNEDLLMENIDLAIRI-GVVKSEGLVAVPLGTSTRRVYAAPAYLDRHGQPREPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL HN I F +E ++ W T E I + N+ +I + + G GI+ Sbjct: 183 ELAGHNCIAF-----TLLEHYDRWHFTHRGEALEVAIKGNVTSNNSEAIREMVLGGLGIS 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P ++ + + ++++ T + V + + + + AF +F+ Sbjct: 238 LSPQWLFAADFEQGGVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFL 288 >gi|118161423|gb|ABK64104.1| putative LysR transcriptional regulator [Janthinobacterium lividum] Length = 306 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 111/203 (54%), Gaps = 3/203 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++VF V +G F+ AA++L +S SS++ Q++ LE G++L R R ++ T +G + Sbjct: 5 EAMKVFCAVVEAGGFSKAAQRLGISTSSVTNQVAALEKHFGVRLLQRTTRSMSQTAEGMQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H +V + + L +++ +PSG LR+ + +NL+ L F+ YPDI ++ Sbjct: 65 CHAQARQVLAYMAALEASLLQAAERPSGSLRVDMPSSISRNLVAPALPRFIAAYPDIALR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D +R+ +P Q SSL+ R L+ + AAP ++ P + QE Sbjct: 125 LTVSDRLVDMVEEGIDVMLRIGEP-QDSSLVARSLLGMDYLCCAAPAFVARHGMPRTPQE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL 208 LD+ + F L PK + WL Sbjct: 184 LDQFACLHF--LYPKARQVRPWL 204 >gi|62289046|ref|YP_220839.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82698983|ref|YP_413557.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus 2308] gi|237814534|ref|ZP_04593532.1| LysR family transcriptional regulator [Brucella abortus str. 2308 A] gi|254690370|ref|ZP_05153624.1| transcriptional regulator LysR [Brucella abortus bv. 6 str. 870] gi|254694858|ref|ZP_05156686.1| transcriptional regulator LysR [Brucella abortus bv. 3 str. Tulya] gi|254696487|ref|ZP_05158315.1| transcriptional regulator LysR [Brucella abortus bv. 2 str. 86/8/59] gi|254731400|ref|ZP_05189978.1| transcriptional regulator LysR [Brucella abortus bv. 4 str. 292] gi|256258624|ref|ZP_05464160.1| transcriptional regulator LysR [Brucella abortus bv. 9 str. C68] gi|260755916|ref|ZP_05868264.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759140|ref|ZP_05871488.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760864|ref|ZP_05873207.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884939|ref|ZP_05896553.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261215191|ref|ZP_05929472.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|297247462|ref|ZP_06931180.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196] gi|62195178|gb|AAX73478.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str. 9-941] gi|82615084|emb|CAJ10013.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Brucella melitensis biovar Abortus 2308] gi|237789371|gb|EEP63581.1| LysR family transcriptional regulator [Brucella abortus str. 2308 A] gi|260669458|gb|EEX56398.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671296|gb|EEX58117.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676024|gb|EEX62845.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874467|gb|EEX81536.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916798|gb|EEX83659.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|297174631|gb|EFH33978.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196] Length = 297 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACFAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|83716061|ref|YP_440296.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|167617021|ref|ZP_02385652.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257140926|ref|ZP_05589188.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83649886|gb|ABC33950.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 334 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLR+ +G+ ++ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I+ L Sbjct: 127 LSDRPVDLLQEGIDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQTIEALA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 +H + + + W +D E +++ L VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIEWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFGLIQPPL 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N L ++ + YP + + K++ F +++ Sbjct: 244 FMVLPHLRNGTLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWV 290 >gi|270261030|ref|ZP_06189303.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044514|gb|EFA17605.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 306 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 149/298 (50%), Gaps = 26/298 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA SF AA+ L+++ S+ISR + LE +V + L R R ++LTE G + Sbjct: 9 VKAFVAVAEHQSFARAAQALNMTPSAISRLVKKLEQQVDMLLINRTTRAMSLTEAGQRYF 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S +L +++ +P G LR++T++ G+ + +L F++ YP ++I L+ Sbjct: 69 TDCSAALEQLRMAYERMRDEQSQPQGTLRVSTSLSFGRLHVAPHLAAFMVQYPQLRIDLL 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +DI + AIR+ + + SSL+ RKL+ A+PHYL+ P +++EL Sbjct: 129 MTDRYVDIVAERVAVAIRIGR-LPDSSLVARKLLNNRRILVASPHYLQQHGTPTTLEELR 187 Query: 188 KHNLITFGDLIPKCMEDF-NWL------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H L+ D NW ATV +P G ++ ++ ++ Q+C+ G G Sbjct: 188 QHQC-----LVSTASHDGENWRLFGPAGATVFQPKGR-----MRADNGDAVKQFCIDGQG 237 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLK 293 IA + ++ L +++ + P +T VY YP +A +F+ L+ Sbjct: 238 IAFHSAVTMAESIRLGELVQ--LLPQWTGRETGVYSVYPPGPVGPAA-RALIDFLTLR 292 >gi|304411683|ref|ZP_07393295.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307306265|ref|ZP_07586010.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|304349871|gb|EFM14277.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306911138|gb|EFN41565.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 299 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 138/274 (50%), Gaps = 7/274 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L +F V GSF+ A+++L LS+S++S++I+ LE +GI+L +R R L+LTE G+ Sbjct: 4 FSALPIFVTVVECGSFSQASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRCLSLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E P G LRIA + G+ + + EFL YP IQ+ Sbjct: 64 RYFDYIRPAVKLAADGLDAISELQQVPQGNLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ +D+K ++ D AIR+ + + SSLI RK+ A+P YL P + Q Sbjct: 124 QMQMDDKTTNLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLVRHAAPQTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN + + + ++ +L+ D +P QVN+ +I Q + G GIA L Sbjct: 183 QLSQHNCLFYSYF--RDGVEWTFLSPQDPTRIQPN-GNYQVNNSDAIHQATLDGLGIANL 239 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275 P ++V + R ++ D P +Y YP+ Sbjct: 240 PRFMVDSDLQAGRLQALLTDHPLPEHGIYAVYPQ 273 >gi|307727271|ref|YP_003910484.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587796|gb|ADN61193.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 334 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP GKLRI +G+ L+ L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPKLCEFHQRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ AAP Y++ P S+++L+ Sbjct: 127 LSDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPSYIERAGMPTSLEDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + + +W VD E ++ S + VN + + + G G+ Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFMVDGKEVEVKMKSIVSVNDADAYVTCGLEGFGLIQPAL 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + LV ++ ++ + YP + + K++ F ++I Sbjct: 244 FMVLPQLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWI 290 >gi|221199095|ref|ZP_03572140.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221205353|ref|ZP_03578369.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221175144|gb|EEE07575.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221181546|gb|EEE13948.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 335 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 11/296 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF AA++L + +SS+SR + LE + +LF R R ++LT +G + Sbjct: 28 TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDTRLFQRTTRSMSLTREGELFYEN 87 Query: 70 TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 L +++E S PSG LRI +T G+ ++ L++F YPDI ++L+L Sbjct: 88 CRPGIDHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVIAPLLRDFHARYPDISLELLL 147 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ +D S D D A R + ++ S+++ R+L+ + M A+P Y P + EL + Sbjct: 148 NDRPVDFSADRIDVAFRDGR-MEDSAIVARQLIPMQMIVCASPAYAHRYGLPRHVNELAQ 206 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247 H I + E W VD + +++ + + ++ VL G GIA LP Y Sbjct: 207 HRCINLRTASGRVKE---WEFKVDGLAQQAQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 263 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 V D + LV + Y CY +++AF +++ +ARD + Sbjct: 264 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRAFIDYMIEQTRARDLQ 319 >gi|295700012|ref|YP_003607905.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439225|gb|ADG18394.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 334 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP GKLRI +G+ L+ L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPALCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ AAP Y+K P S+++L+ Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPDYIKRAGMPTSLEDLE 185 Query: 188 KHNLITF 194 H + + Sbjct: 186 NHKAVNY 192 >gi|187919244|ref|YP_001888275.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717682|gb|ACD18905.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 334 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 143/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ AAP Y++ P S+++L+ Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPDYIERAGMPTSLEDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + + +W VD E ++ S + VN + + + G G+ Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFLVDGKEIEVKMKSIVSVNDADAYVTCGLEGFGLIQPAL 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + LV ++ ++ + YP + + K++ F ++I Sbjct: 244 FMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWI 290 >gi|187924401|ref|YP_001896043.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715595|gb|ACD16819.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 345 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 143/303 (47%), Gaps = 15/303 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++ + + F VA GSF A E+L + +S++SR + LE ++ +LF R R LT Sbjct: 26 IAASYTGIMAFMAVASEGSFAKAGERLGVGRSAVSRNVQKLEAQLSTRLFLRTTRNTQLT 85 Query: 61 EQGSKLHRVTSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G + + V H +E L+ P G +RI++T+ G+ ++ L++F+ Y Sbjct: 86 REGQRFFENCHQGVSHLVEAMNDMLELREGPPRGLVRISSTVGFGRKVVAPLLEKFVKAY 145 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PDI I L+LD++ D + + D A R + I+ SS+I R+L+ + M AAP Y Sbjct: 146 PDIAIDLLLDDRPTDFTSERIDVAFRDGR-IEDSSIIARQLIPMQMALCAAPSYAAAHGL 204 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYC 235 P +++EL +H+ I F + F W +D G R + L N ++ Sbjct: 205 PHTLEELCRHDCINFRFSSGRV---FEWEFKLD---GRVRKYLPTAHLTFNDADLVLHAV 258 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 + GSGIA + Y V ++ LV + Y CY + + F +F+ Sbjct: 259 LQGSGIAQMAGYQVSNHIVAKELVVALSAYAPDDRGHYICYLNRQHLPTRTRVFIDFMAA 318 Query: 293 KAR 295 + R Sbjct: 319 QVR 321 >gi|256556958|gb|ACU83580.1| transcriptional regulator [uncultured bacterium HF130_AEPn_2] Length = 336 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 144/288 (50%), Gaps = 19/288 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF VA + SFT A L +S S++ + I+ +E +G++LF+R R +TLT +G+ Sbjct: 29 MSVFVQVAETRSFTQAGRLLGVSSSAVGKSIARMEQRLGVRLFHRSTRSITLTAEGALFL 88 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E + EL E++ P GKLRI ++ + LL L EF+ YP+I++ + Sbjct: 89 ERSRRILAEVEAAEQELTEAATTPRGKLRI--SLPQVRGLLMPVLTEFMRAYPEIELDVD 146 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQR-----KLVTIHMHAYAAPHYLKNCREPLS 182 ++ +D+ + D +R KP + S L R +LV + Y A H + C L+ Sbjct: 147 FSDRMVDVIEEGFDAVVRTGKP-EDSRLSARLLGHYRLVLVGAPQYFALHGVPACPTDLN 205 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSGI 241 +H G L E + P EP + V++ + +++ V G GI Sbjct: 206 HHACLRHKFCATGKL-----ESWPLRHLPGEP--EPVLRAPLVSTTIESLKHVVHEGLGI 258 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A LPD++V+ + L R+++D + S + + +P + + KL+ F Sbjct: 259 ACLPDFMVRVSVEQGRLQRVLDDYLEHSGSFWMLWPSSRHASAKLRVF 306 >gi|146307756|ref|YP_001188221.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575957|gb|ABP85489.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 306 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 141/295 (47%), Gaps = 24/295 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +F V SFT AA L + +S++SR+I+ LE +G++L R R L LTE G Sbjct: 4 DDALIFTRVVECHSFTQAATSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63 Query: 66 LHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + ++ + + E ++LQ +PSG LRI + I+ GQ L L EF+ YP I Sbjct: 64 YYERCRQIMLDFAEAEQAVMQLQR---EPSGLLRITSPIEFGQLFLGRVLGEFMRQYPQI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L ++ +D + D AI++ +P Q S+LI RKL A+P YL P S Sbjct: 121 DAEVELTSRSVDPLEEGVDIAIQVGQP-QDSTLIARKLFESGRRLCASPAYLAAHGTPRS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239 + EL+ H I P+ W P+ + C +V N+ + + G+ Sbjct: 180 VAELEGHRAILLQHDAPR-----YW------PLLGEHLPCQRVMTCNNITFAREATLAGA 228 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI+ LP I ++ + LV ++ + P VY YP K+K F +F+ Sbjct: 229 GISGLPVMISEEAVRSGRLVELLPEARLPVGEVYAIYPSRRFQAMKVKTFLDFLI 283 >gi|300693886|ref|YP_003749859.1| transcription regulator protein, lysr [Ralstonia solanacearum PSI07] gi|299075923|emb|CBJ35232.1| putative transcription regulator protein, LysR [Ralstonia solanacearum PSI07] Length = 307 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V G F AA +L L+ SS++RQ++ LE +G +L R R +TLTE G++ + Sbjct: 7 LSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEESLGTRLMNRSTRSVTLTEAGAQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +LE+ + E + PSG LR+ + G+ + + FL +P +++ + Sbjct: 67 EDARRILEELESADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPGMRLDIR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ D D AIRL + +S+L+ RKL A+P YL P ++L Sbjct: 127 LTDAMVNLVEDRIDVAIRL-GALTASNLVARKLAPHRRVICASPDYLGEHGTPAQPRDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN + F L D W T D + P L+ N + + V G+G+ L+P Sbjct: 186 HHNCLLFDYLT----GDSTWTLTRDGKREKVPVSGNLRANGSELLREAAVGGAGMLLMPT 241 Query: 247 YIVKDN---PNLVRIMED-VITPSF---TVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ LV ++E TP ++ Y + + KL F +F+ Sbjct: 242 WLVGDDIAAGRLVPVLEPWTPTPGADEGAIWAVYLPNRRGSKKLAGFLDFL 292 >gi|108760006|ref|YP_634590.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108463886|gb|ABF89071.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622] Length = 312 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V +G T AAE+L L +S++SR+++ LE +G++L R+ RGL LTE G Sbjct: 9 DDMLLFTEVVATGGITAAAERLGLRKSTVSRRLAALEERLGVRLIERNTRGLRLTEVGRD 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + + + L ES V P G LRIAT LG+ LL + E LL P ++++ Sbjct: 69 YHAHCARLVAEAREVNRALGESRVTPQGTLRIATLSLLGE-LLTPLIAELLLRNPLLRVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L +D+ + D A+R P+ S+++ R+L + YA+P YL P + E Sbjct: 128 VSLAEAHVDLISEEYDVALRT-GPLADSAMVARRLGRLRTGYYASPAYLARQGAPRTSAE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + D W R P L+V S + G G+ L Sbjct: 187 LQGHACVVLA----APGTDEVWFFGEGRGAKSLPVTGRLRVPSVRAGQAAARAGLGVVRL 242 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V ++ LV ++E P V+ YP + K++AF Sbjct: 243 PASLVAEDVRGGLLVPVLETETPPGIPVFAVYPSRRQLPLKVRAF 287 >gi|289209246|ref|YP_003461312.1| LysR family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944877|gb|ADC72576.1| transcriptional regulator, LysR family [Thioalkalivibrio sp. K90mix] Length = 301 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 19/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++++F V +G F HAAE L LS++++SR ++GLE +G +L +R R L+LT +G Sbjct: 4 FQQMQIFVAVVETGHFVHAAETLGLSKAAVSRAVNGLEERLGARLLHRTTRRLSLTSEGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L + E+ E SG+LRI + G L F +P +++ Sbjct: 64 TFFGRSKLLLEELAAAEGEISERGTAVSGRLRINVPVSFGIQHLAPLWGTFTARHPRVEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L+++ +D+ + D A+R+ + SSSL+ R+L T M AAP YL P + Sbjct: 124 DVTLNDRSVDLVDEGFDLAVRI-GTLDSSSLVARRLATTRMRICAAPDYLAASGLPAHPR 182 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 EL H I + GD +W L D P+ L+ N+ + + + G Sbjct: 183 ELADHATIAYSYHATGD---------DWTLTGPDGPVAVTTRPVLRSNNGETCVAAALAG 233 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI P+++++ L + D T + ++ YP K +A +F+ Sbjct: 234 QGIVYQPEFLLQPHLQTGALQVLFPDWETATLGIHAVYPSRRYLLPKTRALIDFL 288 >gi|170697804|ref|ZP_02888890.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170137306|gb|EDT05548.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 299 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 132/283 (46%), Gaps = 7/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F +AR+G+ AA QL++ Q+++ R+I+ LE E+ +LF R LT Sbjct: 7 MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPALYVLTTA 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + T + + + +G +RIATT LG+ + + + I Sbjct: 67 GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDSLGKRFVIPAIARLRRRHAGI 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + +++ AD AIR +P +S LI R+L + YA+ HYL EP++ Sbjct: 127 DVVCVTSTEIANLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRHYLAERGEPVA 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 D H+L+ + + M W A P R+ Q +S + +++ + G GIA Sbjct: 186 GSAFDGHDLVMYQQPVMPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 LP + + P LVR+M F V+ L T +++A Sbjct: 241 ELPCFRAEAEPELVRLMARRCN-HFDVWLVAHADLYKTARVQA 282 >gi|170741283|ref|YP_001769938.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168195557|gb|ACA17504.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 301 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F VA++GSF+ AA +L LS +++S+ +S LE +G LF+R +R L LTE G Sbjct: 5 DFEAWAIFARVAQAGSFSRAAAELALSTATVSKAVSRLEARLGASLFHRTSRRLALTETG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + ++Q + +P G +R+A + G L L +FL +P + Sbjct: 65 RAALEGAARIVAAGEAVEADVQTGAREPRGLVRLAAPMSFGLAHLAPRLPDFLADFPQVS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D +R+ + SSL R+L + AAP YL P Sbjct: 125 VDLHLSDAQVDLVGGGFDLGLRIAA-LSDSSLRVRRLCGVRRSLVAAPAYLARAGRPGHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 ++L +H + + L F P GE ++ L+ N+ ++ + G G Sbjct: 184 RDLARHACLGYAYLPNPERWHFTG------PGGEVAVAPAGRLRANNADALTPALLAGFG 237 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+ PD+++ D+ L R++ + P + P ++ A F+ Sbjct: 238 LAVQPDFLIFDDLASGRLERVLPEWSPPPIALNLVMPPGALRPARVVALIAFL 290 >gi|325291645|ref|YP_004277509.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gi|325059498|gb|ADY63189.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 293 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 136/289 (47%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG A+++L L+ +++SR+++ LE + +LF R G LTE+ Sbjct: 1 MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTSLEQALKTQLFIRRTNGCELTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L +G +RI LG + L L YPD+ Sbjct: 61 GQLFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI + +P Q L+ KL + YA+ YL P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERPEQ-GRLMFSKLTDYSLGLYASKSYLSEYGTPAD 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ L +H I + DLI N+ + R + +++S + G+GI Sbjct: 180 VETLKRHRRIGYVEDLI--FSPSLNYTGEIMRDWD----AAFEISSATGQTEAVRSGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L +YI P L+RIM ++ S + + Y E+ + +++ +F+ Sbjct: 234 GILHNYIAGQYPELLRIMPH-MSISRSYWTAYHESARQLVRVRTVVDFL 281 >gi|307257945|ref|ZP_07539698.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262340|ref|ZP_07543987.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306863492|gb|EFM95422.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867956|gb|EFM99785.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 295 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 123/248 (49%), Gaps = 11/248 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V ++ F +A+ +++ S++SR+IS LE +G++L R R + LTE G+ Sbjct: 5 DDMRLFVEVVKANGFKNASNVMNVPTSTLSRRISLLEKAIGLRLLNRTTRKIELTEAGAI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V + E L E S KPSG LR++TT D + L L EF YP+I Q Sbjct: 65 YFERCKRVVIEAELAHEALDEMSYKPSGLLRVSTTQDFAKIFLLPYLAEFAECYPEINCQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ I++ + D AIR+ + ++ S I R L + YA+P YL R P+ I E Sbjct: 125 FHLSDEKINLVGNPVDLAIRIGR-LEDSHYIARFLTQSQLRLYASPTYLARNR-PIQIPE 182 Query: 186 -LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L + N + FG W L DR + P N+ + Q G GIAL Sbjct: 183 NLAELNCLAFGS-------QQKWQLTQNDRMVEIPISGRFSANNIGFLCQLASDGLGIAL 235 Query: 244 LPDYIVKD 251 LPD + K+ Sbjct: 236 LPDVVAKN 243 >gi|172062159|ref|YP_001809810.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994676|gb|ACB65594.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 330 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 149/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++I+ LE ++G +L +R R +T+TE G + Sbjct: 31 DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAGER 90 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G++++ L +F YP + ++ Sbjct: 91 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 150 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L T H A+P YL P ++ + Sbjct: 151 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRTLAD 209 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233 L H+ + + D P G R+ + ++V LS +Q Sbjct: 210 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 255 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + + L R++ D I P+ ++ YPE + + K++ +F+ Sbjct: 256 WALAGRGIVLRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFL 314 >gi|149907849|ref|ZP_01896517.1| putative transcriptional regulator, LysR family [Moritella sp. PE36] gi|149808855|gb|EDM68786.1| putative transcriptional regulator, LysR family [Moritella sp. PE36] Length = 301 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 8/290 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA+ + L++S +S+ I+ LE E+G++L +R R LTLTE G Sbjct: 5 DDFLIFYHLIEQGSFSKAADIVGLTKSVVSKHITRLEKEMGVQLIFRTTRKLTLTEAGKV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +Y ++ + SG +R+ G+ +L + +F + YPDI + Sbjct: 65 FFEHARTIYQSVQGAVDAMNGLGDSLSGSIRLTVPTVSGEIILAEAIADFSISYPDIHVH 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN +D+ + D AIR +Q SS I R+LV A+P YL N P Q+ Sbjct: 125 MDLDNSFVDLIDNNFDLAIR-TGALQDSSYIARRLVQAQWVICASPAYLANNGTPKRPQD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L+K+N + + E WL +IS N+ ++ + + G+ + Sbjct: 184 LEKYNCLAYSHQESGANE---WLFKGREADYSVKISGNFSTNNSAALRKAALFNLGLIYV 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P +V D+ LV ++ + S +Y YP K+K F I+ Sbjct: 241 PKVLVADDLQAGTLVEVLPKQVAKSLGIYAIYPYTKLQPLKVKLFIEHIY 290 >gi|261364503|ref|ZP_05977386.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC 25996] gi|288567439|gb|EFC88999.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC 25996] Length = 299 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 143/292 (48%), Gaps = 10/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + + F +SGSFT AA+QL L++S+I ++I LE + ++L R+ R L T++G Sbjct: 5 NLNDMTAFVASVKSGSFTAAAKQLGLTRSTIGKRIVRLEARLNVRLLQRNTRNLAPTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + V +LE + L + S++P G+L+I+ + LG+ +L L +FL YP Sbjct: 65 RLFYERCTAVLEELENAEQCLAQRSIEPQGRLKISAPLVLGKTILPPLLADFLHRYPQTS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L + D+ D D A+R P Q SLI R + + M AAP YL P S Sbjct: 125 VELSLTDDYADLISDGYDLALRNGNPPQFDSLIARTVGSQQMLTCAAPGYLVQHGTPQSP 184 Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H + F G + + F G R S ++ ++++ + GI Sbjct: 185 DDLAHHQCLHFLHGGRVSRWR--FQQKGKETTFQGSGRFSA---DNGEALLELALSAFGI 239 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y+V+ D+ +L ++ D + V YP + + K++A + + Sbjct: 240 VQLPHYLVQTALDSGSLKSVLNDFQSKPVPVMAVYPSRKQLSPKVRALVDMM 291 >gi|91779249|ref|YP_554457.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691909|gb|ABE35107.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 334 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 3/205 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLSEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ AAP Y++ P S+++L+ Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPDYIERAGMPSSLEDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD 212 H + + + +W VD Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFMVD 208 >gi|152970457|ref|YP_001335566.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955306|gb|ABR77336.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 295 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 127/267 (47%), Gaps = 7/267 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VVAR SFT AA QL +SQS++S + LET + ++L R R + TE G +L + Sbjct: 12 FMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAGERLIQRL 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 ++E L+++ +P+G LRI +L LK F+L YPDI I++ +DN Sbjct: 72 GPHLEEIEQALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDINIEITVDN 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI D D +RL + + + R + M +P YL+ P + +L +H Sbjct: 132 GLTDIVGDRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSPAYLQRAGTPQTPWDLAQHR 191 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249 I +P + W D + R+ L +NS + G G+A +PD V Sbjct: 192 CINL--RLPTRGGLYAWEFARDGREIQVRVEGQLLLNSLPQRIDAAEAGLGLAYVPDDCV 249 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273 + + LVR++ + TP+F Y Y Sbjct: 250 AEALASGRLVRVLAE-WTPAFPGYHLY 275 >gi|89074606|ref|ZP_01161071.1| transcriptional regulators, LysR family protein [Photobacterium sp. SKA34] gi|89049544|gb|EAR55104.1| transcriptional regulators, LysR family protein [Photobacterium sp. SKA34] Length = 299 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 140/261 (53%), Gaps = 8/261 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V ++ SF+ A + + +Q++IS++I+ LE ++ KL R +R L LTE G++ + Sbjct: 7 MRAFIRVVQTESFSATAREQNTTQATISKKIAALEHKLEGKLLTRSSRDLALTEVGAEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + ++ P G ++IA I G + + EFL YPDI + L Sbjct: 67 ERCVAIISELDEAESNVRAHRALPQGVIKIAAPITFGNIFIAPIISEFLARYPDISVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +K +DI + D AIR R+ ++ SSLI R L A+ Y+ EP++ ++L+ Sbjct: 127 LSDKHVDIISEGVDVAIRARE-LEDSSLIARHLFDNPNILVASSAYIAKYGEPVTPEDLN 185 Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN I + + M ++N+ + + + + +S +I++ + G GIALLP Sbjct: 186 QHNCIIYS--LSSTMNNWNFYNKKIKKSVSVS--GNFKSDSCDAILRSVLDGVGIALLPV 241 Query: 247 YIVKDNPNLVRIMEDVITPSF 267 ++V++ N RI + + PS+ Sbjct: 242 WMVENEINAGRIKQ--LMPSY 260 >gi|262375255|ref|ZP_06068488.1| transcriptional regulator [Acinetobacter lwoffii SH145] gi|262309509|gb|EEY90639.1| transcriptional regulator [Acinetobacter lwoffii SH145] Length = 299 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 142/295 (48%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLSDLDDFYCFAQVVEHGGFSAAERATDIPKSKLSRRVFNLEERLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + S +P G ++++ + + QN L L FL YP Sbjct: 61 DIGMNIYRHAQVMLSAAQAAHDLVDHLSTEPRGTIKVSLPVSIAQNELAKILPNFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++Q+++ N+ +DI + D A+R+R + +L+ R+ I H +A+ YL E Sbjct: 121 EIKVQMMITNRRVDIINEGFDLALRVRSSLDDDPNLVIRQFEKIEQHLFASQGYLNEFGE 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238 + ++L +H +++ + E F L + + R+S + S L+++ Q G Sbjct: 181 LKNPEQLAEHKILSMAE---DHTEQFLTLQNEQQEQKKIRVSPTVMGSDLNMLAQLAASG 237 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 SG+ LLPD +V+ + LVR++ D P + YP G L A R FI Sbjct: 238 SGVTLLPDNVVEQYVASGELVRVLPDWKAPHGIFHVVYP---SRRGLLPAVRVFI 289 >gi|213972137|ref|ZP_03400227.1| transcription regulator protein [Pseudomonas syringae pv. tomato T1] gi|302062048|ref|ZP_07253589.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato K40] gi|302131888|ref|ZP_07257878.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923114|gb|EEB56719.1| transcription regulator protein [Pseudomonas syringae pv. tomato T1] Length = 297 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 130/274 (47%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L VF VAR SFT AA L +SQS+IS I LE +GI+L R RG + TE G Sbjct: 5 DFNSLAVFITVARERSFTRAAAHLGVSQSAISHSIRSLEERLGIRLLTRTTRGASPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L Y +ET L E KP+G +RI + ++L L L YPD+ Sbjct: 65 ERLLVSLVPYYEGIETEIAALGELRDKPAGTIRITSPDHAASSILWPKLSRLLPEYPDLT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ + + IDI + D +R+ + + R + M AP Y + +P Sbjct: 125 LEINIGYRLIDIVAERFDAGVRIGDQVAKDMIAVRISPDLRMAVVGAPSYFAHRAKPQIP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 Q+L HN +P + W + D ++S + ++ IM + G G+A Sbjct: 185 QDLTTHNCANL--RLPTHGGLYAWEFSKDGKALHVQVSGQMIFSNSPQIMAAALQGYGLA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 P+ +V+ ++ L+R++ED +P+F Y Y Sbjct: 243 YAPEDLVQAYVEDGRLIRVLED-WSPTFPGYHLY 275 >gi|254255187|ref|ZP_04948503.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124900924|gb|EAY71674.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 299 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 16/296 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 3 NMELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + ++ + + S + G L+I+ + G + + EFL +P Sbjct: 63 SGHEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P Sbjct: 123 VRLNLDLTDRRVDVIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRRGTPA 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237 + +L H + +G W VD G R +Q N+ + + Sbjct: 182 TPADLAGHTCLLYGR-----ERRVGWEFRVD---GAARTFGVQGPLVANNGEVVRDAAIA 233 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIALLP +IV + LV +++ T+ YP+ + L+ F F+ Sbjct: 234 GLGIALLPHFIVGAAIERGALVPVLDAYAPSPITLNAVYPQHREGFVTLRTFIGFL 289 >gi|115358237|ref|YP_775375.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115283525|gb|ABI89041.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 293 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 132/283 (46%), Gaps = 7/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F +AR+G+ AA QL++ Q+++ R+I+ LE E+ +LF R LT Sbjct: 1 MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPALYVLTTA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + T + + + +G +RIATT LG+ + + + I Sbjct: 61 GEALLEPAETMERASLTIERRVMGLDEQLAGTVRIATTDSLGKRFVIPAIARLRRRHAGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + +++ AD AIR +P +S LI R+L + YA+ HYL EP++ Sbjct: 121 DVVCVTSTEIANLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRHYLAERGEPVA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 D H+L+ + + M W A P R+ Q +S + +++ + G GIA Sbjct: 180 GSAFDGHDLVMYQQPVMPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 LP + + P LVR+M F V+ L T +++A Sbjct: 235 ELPCFRAEAEPELVRLMARRCN-HFDVWLVAHADLYKTARVQA 276 >gi|323491937|ref|ZP_08097106.1| Transcriptional regulator, LysR family protein [Vibrio brasiliensis LMG 20546] gi|323313795|gb|EGA66890.1| Transcriptional regulator, LysR family protein [Vibrio brasiliensis LMG 20546] Length = 298 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 146/286 (51%), Gaps = 24/286 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + VF V GSFTHAAE L++++S++SR++ LE +G++L R R L LT + Sbjct: 1 MDLNAVTVFAQVVDCGSFTHAAETLNMTKSTVSRKLVELEQHLGVRLITRSTRSLVLTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G K ++ + ++ + ++E+ + G L + ++LG +L + +FLL YP + Sbjct: 61 GEKFYQSSLQMLEIINQAELEVSANQDLVRGPLNVVLPVELGHQVLGSYIHQFLLDYPHV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L N+++DI + D ++ ++ S+L+ R L + A+P YL + S Sbjct: 121 TMNLELSNREVDIIGEGIDLYAQIGD-LEDSNLVSRYLTSSKRALVASPKYLAQYGDITS 179 Query: 183 IQEL-DKHNLITFGD---------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 Q+L H+++ + L P E ++ +D P L+VN+ + + Sbjct: 180 HQDLVSPHHMVEVFNKAARLPKWHLQPDTGESYH----IDLP------HRLRVNTITACL 229 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + C+ G GIA+LP++I +++ LVR++ P V Y + Sbjct: 230 KACIDGLGIAVLPEFICREHFASGALVRLLPQYKMPEVQVSLVYAD 275 >gi|323170995|gb|EFZ56644.1| hypothetical protein ECLT68_4317 [Escherichia coli LT-68] Length = 304 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AA QL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAVQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +I +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|322830851|ref|YP_004210878.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321166052|gb|ADW71751.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 313 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA +FT AAE L L + S+SR + LET + +L +R R + LT+ G + Sbjct: 21 MQVFVRVAELSNFTRAAESLGLPKGSVSRLVQQLETRMSARLLHRSTRRVQLTQDGQVFY 80 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E+ ++ + Q + SG+LR+ T + +L+ L EFL YP ++I+L Sbjct: 81 QRCKELLASMDELESMFQSNPASVSGRLRVDMTTGMATHLVLPRLAEFLNRYPALEIELS 140 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ + DC IR ++ S LI R L + M A+P YL+ P +L Sbjct: 141 CTDHRVDVVREGFDCVIR-SGTLKDSGLIARPLGHLSMVNCASPGYLRRYGTPDHPDQLA 199 Query: 188 KHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H ++ + ++ F +L TV + VNS + + C+ G GI Sbjct: 200 QHAMVHYEQILGSHTSAFEYLDGKQVKTVKSG------GAVTVNSTETYVSACINGLGII 253 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P V+D LV I+ P V YP L + ++K F +++ Sbjct: 254 QVPLIGVRDALAGGQLVSILPQFRAPPMPVTLVYPHRLNLSRRVKVFMDWL 304 >gi|323528747|ref|YP_004230899.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385749|gb|ADX57839.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 303 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 131/287 (45%), Gaps = 9/287 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ SF+ AA L + S++SR+++ LE +G+ L R R L+LT QG Sbjct: 6 DLNDIAVFVRVAQFESFSRAARALGMPVSTVSRKVTALEVRLGVTLLQRTTRKLSLTSQG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 SE L + + ++ KP G LRI+ + L Q G L FL YP IQ Sbjct: 66 RAYFDECSEPLSHLYDAERVITQTQKKPEGVLRISGPVMLEQEPFYGFLSAFLKDYPQIQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L N ID+ + D AIR + +Q SSL+ +++ + Y +N P Sbjct: 126 VDLYFTNAFIDLIAENVDVAIRFGE-LQDSSLVAQRVGRSVRQLVVSADYARNHPLPSRP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL +H + LI + W R R+S + + + + + G GIA Sbjct: 185 DELSQHPCV----LINARNNETEWHLVSGRKAARVRVSGPVAARDFHIVNAFALRGHGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LLP + LVR++ + +P V+ YP KLKAF Sbjct: 241 LLPSSYCDPHIASGELVRVLPEWSSPEIFVHAVYPTRRFMPSKLKAF 287 >gi|295676855|ref|YP_003605379.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436698|gb|ADG15868.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 300 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIETFATVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 66 LEDCQRILHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P S+ EL Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLAENRRVCVASPAYLNRRGAPHSLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + G + W+ D + ++S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADLAAGRLVTVLDEFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|221212215|ref|ZP_03585193.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221168300|gb|EEE00769.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 335 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 11/296 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF AA++L + +SS+SR + LE + +LF R R ++LT +G + Sbjct: 28 TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDTRLFQRTTRSMSLTREGELFYEN 87 Query: 70 TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 L +++E S PSG LRI +T G+ ++ L++F YPDI ++L+L Sbjct: 88 CRPGIDHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVIAPLLRDFHARYPDISLELLL 147 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ +D S D D A R + ++ S+++ R+L+ + M A+P Y P + EL + Sbjct: 148 NDRPVDFSADRIDVAFRDGR-MEDSAIVARQLIPMQMIVCASPAYAHRYGLPRHVDELAQ 206 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247 H I + E W VD + +++ + + ++ VL G GIA LP Y Sbjct: 207 HRCINLRTASGRVKE---WEFKVDGLAQQAQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 263 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 V D + LV + Y CY +++AF +++ +ARD + Sbjct: 264 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRAFIDYMIEQTRARDLQ 319 >gi|226945847|ref|YP_002800920.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226720774|gb|ACO79945.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] Length = 297 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 18/290 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F V R GSFT AA QL +S S++S I GLE +G++L R R ++ TE G Sbjct: 5 NFNDLLAFVRVVREGSFTRAAAQLGMSPSALSHAIRGLEARLGVRLLTRTTRHISTTEVG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + ++ L E +P G +RI T ++L L E L YPDIQ Sbjct: 65 ERLFQGVAPRFEAIDARLAGLAEFRDRPVGTVRITTAEHAANSILWPKLSEVLREYPDIQ 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D + DI D +RL + + R + + +P Y EP + Sbjct: 125 VEVTVDYRLADIVAQRYDAGVRLGDQVAKDMIAVRIGPDLRIAIVGSPAYFATRSEPETP 184 Query: 184 QELDKHNLI-----TFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +L HN I T G L+P DF + V R G+ NS I++ + Sbjct: 185 MDLAGHNCINLRLPTHGGLLPW---DFGKDGKEIVARVGGQ-----WTFNSSEPILRAAL 236 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 G G+A LP+ + ++ LVR+++D P + YP +++ L Sbjct: 237 AGHGLAFLPEDMALEHIAAQRLVRVLDDWCQPFPGYHLYYPSRRQSSRAL 286 >gi|323499389|ref|ZP_08104365.1| Transcriptional regulator, LysR family protein [Vibrio sinaloensis DSM 21326] gi|323315574|gb|EGA68609.1| Transcriptional regulator, LysR family protein [Vibrio sinaloensis DSM 21326] Length = 298 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 142/279 (50%), Gaps = 10/279 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + VF V GSFT AAE L +++S++SR+++ LE +G++L R R L LT + Sbjct: 1 MDLNAVNVFTQVVDCGSFTQAAESLGMTKSTVSRKLAELEQHLGVRLITRSTRSLILTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + ++ + ++E+ + G L + ++LG +L + +FL+ YP + Sbjct: 61 GERFYQSSQQMLEIMTQAELEVSANQDLIRGPLSVVLPVELGHQVLGSYINQFLVQYPHV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L N+++DI + D ++ + ++ S+L+ R L A+P YL E S Sbjct: 121 TMNLELTNREVDIIAEGIDLYAQIGE-LEDSNLVSRYLAASKRALVASPDYLNQFGEIHS 179 Query: 183 IQELDK-HNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H ++ ++ K + W A + I L+VN+ S +Q C+ G Sbjct: 180 HHDLTAPHQMV---EVFNKAVRLPKWHLQAENGQSIQIDLPHRLKVNTITSCLQGCIAGL 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 GIA+LP++I ++ LVR++ D P V Y + Sbjct: 237 GIAVLPEFICLEHFATGKLVRLLPDYKMPEVGVSLVYAD 275 >gi|330807899|ref|YP_004352361.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376007|gb|AEA67357.1| Putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 304 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 134/275 (48%), Gaps = 9/275 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D L F V+ ++GSFT AA+QL S+ +S++IS LE + L R R L+LT G Sbjct: 3 EMDDLAAFAVLMKAGSFTQAAQQLGCSKGQLSKRISLLERRFSVVLLQRTTRRLSLTAAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + ++E + L SG +R+ + LG+ +G L EF YP++Q Sbjct: 63 AALLPQAQALLVQVERARQALARLKDDISGPVRMTVPVSLGETFFEGLLMEFARTYPNVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L L+N D++ D D AIR I L+ R L+ H A+P YL+ EP + Sbjct: 123 IELELNNGYRDLTRDGFDLAIRSDAAI-DERLVARPLLAWHEMTCASPAYLERYGEPETP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 Q L +H + L WL + R+S +++ S+++ L G+GIA Sbjct: 182 QALAEHRCL----LNSHYSGREEWLYHQQHELLRVRVSGPFASNHYSLLKKAALAGAGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LP Y++ + + L ++ D T +Y +P Sbjct: 238 RLPSYLLHEELADGRLHWLLRDYQTRRMPMYLVHP 272 >gi|327191164|gb|EGE58208.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 294 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 10/289 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA SF AA+ L +S ++SR +S LE +G +LF R +R L LT+ G +L Sbjct: 1 MFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDS 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +Y + E + +E + +P G +R+A +D G L L +F L+P++ I L + Sbjct: 61 AARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEVSIDLHMS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI D D A+R+ + SSLI R+L + AAP YL P +EL H Sbjct: 121 DAVVDIVGDGFDAALRI-AVLPDSSLIARRLTPVDRFILAAPAYLDRYGVPEHPRELAAH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + + +D L + + P S NS + ++ + G GI LP++ Sbjct: 180 HCLGYAY---RARQDVWRLRNGEGREEVVVPSGSLRATNSEV-LVPMALRGLGIIELPEF 235 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + D + L I+ D P+ +YF P A K++ +F+ + Sbjct: 236 LAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMAR 284 >gi|295689351|ref|YP_003593044.1| LysR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431254|gb|ADG10426.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC 21756] Length = 300 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 11/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L VF V SF AA++L +S++++S+ ++ LET +G +LF R +R L LT+ G Sbjct: 6 DLEGLAVFAKVVELRSFAAAADELAMSKATVSKAVTRLETRLGARLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + V + + + E S P G +R+A + LG L L FL YP++ Sbjct: 66 QSLVERATRVLAEAQAAEEEASSQSSAPRGLVRMAVPMSLGITTLGPVLPAFLEAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + ID+ D A+R+ + SSL+ R+L + H A+P Y P Sbjct: 126 IDLNLSDATIDLVGMGFDLALRVAD-LPDSSLVARRLRPVKRHLVASPAYWDRHGRPHHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L +H +T+G E + + + PR S ++ N+ ++ + GSG+A+ Sbjct: 185 ADLAQHRGLTYGHQ--SAPETWRFQKGSEEAAVRPR-SVIRANNGDVLLPALLAGSGVAM 241 Query: 244 LPDYIVKDNPNLV-RIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+IV P + ++E+V+T ++ P +++A +I Sbjct: 242 LPDFIV--GPAVADGLLEEVLTDWQRAPIALHLVMPPGGPRPARVEALAAYI 291 >gi|91794313|ref|YP_563964.1| LysR, substrate-binding [Shewanella denitrificans OS217] gi|91716315|gb|ABE56241.1| transcriptional regulator, LysR family [Shewanella denitrificans OS217] Length = 303 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA ++ +S+ISR+++ LE ++G++L R R ++LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAAREVGQPKSTISRKVAQLEEQLGVRLLQRDTRNISLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + ++E + ++ + SG LR+A + Q+++ F+ LYP+I+ Sbjct: 63 ALFFQHCDSISQEIEAAKAIIENTHNDISGALRVAIPVSFSQDVIASLCSNFMRLYPNIE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D+ + + D AI+ P+QSS L+ + L A+P Y+KN P + Sbjct: 123 LDIQFTDNDVGLVGEGYDIAIKY-GPLQSSDLVAKLLFERQPILVASPSYIKNHGTPATP 181 Query: 184 QELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL +HN I G + P +AT +R + +VNS + + + Sbjct: 182 QELAQHNGILLGTTLSAPIWPLGKGGRKTMATFNRKV--------RVNSASMVKRLAIDA 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + K + LV I+++ F VY Y + + AF F Sbjct: 234 YGIAMLSNTSCKQELASGALVPILQEWPMEPFKVYGVYSSRRQLATNISAFLEF 287 >gi|288935439|ref|YP_003439498.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288890148|gb|ADC58466.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 306 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 22/294 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+D+L F VA +GSF A+ +L S ISR++S LE ++G++L R R +TLTE G Sbjct: 4 DFDELMAFVCVAEAGSFIGASLRLERDASVISRRVSHLEKKLGVRLLVRTTRSVTLTEAG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + +L E+ + + P G LR++ + G+ L+ +FL YPDI+ Sbjct: 64 TWFLQRARTALDELSAASREVGDFAATPQGTLRVSLPVTFGRELIAPMFPDFLQAYPDIR 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++ +DI + D IRL ++ S+L R+L A+P YL+ EP Sbjct: 124 LDAHFLDRRVDIVAEGFDAVIRLGN-LRDSTLTGRELGAFRSQLIASPAYLQRYGEPTHP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDR------PIGEPRISCLQVNSYLSIMQYCV 236 ++L H + F D+ W+ R P G L N +++ + Sbjct: 183 EQLAAHRCLGF-----THHPDWPYWILENGREHIQVTPAGP-----LTTNISEALLTAVI 232 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAF 286 +GIALLP ++V LVR++ D + + +VY P K + F Sbjct: 233 RATGIALLPGWMVNQAVQCGELVRVLPDWRSAARVSVYALMPPGTLVPAKTRVF 286 >gi|262395721|ref|YP_003287574.1| transcriptional regulator [Vibrio sp. Ex25] gi|262339315|gb|ACY53109.1| transcriptional regulator [Vibrio sp. Ex25] Length = 328 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 12/287 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G L R R L LTE G L+ Sbjct: 36 IRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGATLLQRTTRTLKLTEAGKVLY 95 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + + + G++RI LG++++ + +FL+ +P + I L Sbjct: 96 KQCETALHNIDQAVMAVVDDVEELRGEIRINCVGGYLGEDVVADIVAQFLIQHPQVNINL 155 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K + S+ I RKL+ + M YA+P YL+ P ++L Sbjct: 156 DFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPSYLETHGYPSHPKDL 214 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +KH +T G + E+ N + + I G+ R +V +++ + G+GI +P Sbjct: 215 EKHICLT-GSVTRWAFENTNTKQSTEHQIRGQLRCKSGRV-----MIKAALAGNGIIRVP 268 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + L + D PS Y +++AF +F Sbjct: 269 ALYCQQELQTGKLKEVFTDWSIPSVEFSLLYHHDRHQPKRIRAFIDF 315 >gi|207728272|ref|YP_002256666.1| hypothetical protein RSMK04668 [Ralstonia solanacearum MolK2] gi|206591518|emb|CAQ57130.1| hypothetical protein RSMK04668 [Ralstonia solanacearum MolK2] Length = 284 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 137/293 (46%), Gaps = 17/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V ++ F AAE + + S++SR+I LE +G++L +R R + LTE G Sbjct: 1 MALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQLYF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L E +PSG LR + +D L + EF LYP I Sbjct: 61 ERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFDFD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D AIR+ P + S LI R L ++ H YA+P YL EP +L+ Sbjct: 121 LTPRRVDLVSEPFDVAIRM-GPSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPADLE 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H ++ ++D ATV +G +NS I + VL GI L+P+ Sbjct: 180 RHECLSILKAGSWTLQDGKRTATVS--VG----GRFTLNSVGMIRRLAVLDLGIVLMPEE 233 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI-FLKAR 295 IV D + L RI+ S VY A+ T L A + FI FL+AR Sbjct: 234 IVADELASGKLRRILPGWHGTSMPVY-----AITETRLLPAKTQRFIEFLRAR 281 >gi|170699220|ref|ZP_02890272.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170135880|gb|EDT04156.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 306 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 137/283 (48%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A GS++ AA L ++ S++S+ I LE +KLF R R LTLT++G +LH Sbjct: 12 LIAFSRAASLGSYSAAARALGVTPSAVSKSIQRLEQHFELKLFNRTTRSLTLTQEGRELH 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + ++E + + +P+G L++ + +G +L+ L F +P + I L Sbjct: 72 ERTLRLLAEMEAIEQAAVSARSEPAGTLKVTAPLPIGIHLIAPALPAFRKRFPKLSIDLR 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D AIR+ + S LI R+L H+ AYA+P YL P +L Sbjct: 132 LGDHFVDLVGEGVDVAIRVGD-LSGSRLISRQLSPHHIGAYASPDYLARRGVPKHPDDLV 190 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F + F W T + + + V++ ++ V G G+ + P Sbjct: 191 DHDCVNF--RFQSSGQVFRWNFVTGHGSLDLIPDAGIVVDTSDAVAAVMVAGGGVGITPA 248 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y+ LV ++ + + P T+ +PE+ +++ +KAF Sbjct: 249 YVAASYVKRGELVPLLTEFVEPRSTITALWPESRRSSPNVKAF 291 >gi|90411107|ref|ZP_01219120.1| transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90327953|gb|EAS44274.1| transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 294 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 143/290 (49%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA+ SF AA L +S+S++S++++ LET +G++L +R R ++LTE G Sbjct: 5 DAIPYFLAVAKHESFAEAARHLDVSRSAVSKRVNQLETSLGVRLLHRTTRKVSLTEAGKH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 Y+ ++ + P GKL++ + G+ + + FL YP ++I Sbjct: 65 YLINAQNAYYWIQQAEDAATSRQRSPIGKLKVCVPMSFGRLKIAPLIPGFLKKYPQVEID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +++D++ DI D AIR + + SSLI RKL+ A+ YL P + + Sbjct: 125 MVMDDRYSDIVDAGFDVAIRGGE-LADSSLIARKLMPSRSLICASSAYLDGKTLPTTPID 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +HN + + + W+ I + +VN+ ++++ C+ G G+ L Sbjct: 184 LTEHNALIYS----YSAQTTEWVFEYQDHIETVAVRGNYRVNNSEAVLEGCLQGIGVGRL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 PD+I K DN L++++ + P ++ +PE K++ F ++++ Sbjct: 240 PDFIAKPYIDNGELIQLLSEYKMPEKNIWAVFPERTYMPVKVRIFIDYLY 289 >gi|167901464|ref|ZP_02488669.1| LysR family transcriptional regulator [Burkholderia pseudomallei NCTC 13177] Length = 315 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTTIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290 >gi|218529137|ref|YP_002419953.1| LysR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218521440|gb|ACK82025.1| transcriptional regulator, LysR family [Methylobacterium chloromethanicum CM4] Length = 297 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 10/275 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR+GSFT AA QL +SQ ++S+ + GLE +G++L R R + TE G + Sbjct: 7 NDLVAFVAVARAGSFTKAAAQLGVSQPALSQTVRGLEARLGVRLLARTTRSVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E L E K +G +RI Q++L L+ L YPDI+++ Sbjct: 67 LLNAVGPRFDEVEEGLAGLAEMRGKAAGTVRITADEHAAQSVLWPVLRRLLPDYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++D DI + D IRL + R + M A AAP Y +P + Sbjct: 127 TVVDYGLTDIVAERIDAGIRLGGTLARDMTAVRIGPDLRMAAVAAPSYFAARSKPERPDD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H I +P + W ++ E R+ L N+ I++ + G GIA Sbjct: 187 LTAHTCINL--RLPTHGGLYAW--EFEKGGRELRVWVEGQLVFNTITLILEAALDGFGIA 242 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LP+ V+ + LVR++ED P + YP Sbjct: 243 YLPEDGVRAHLAAGTLVRVLEDWCEPYSGYHLYYP 277 >gi|114048997|ref|YP_739547.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113890439|gb|ABI44490.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 317 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 9/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L L+++++SR+I+ LE++ G +L +R R L LTE Sbjct: 1 MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + +++ L++ + +L G L+I I+LGQ L +FL LYPDI Sbjct: 61 GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ L N+ +D+ + D ++ + L LV + A+P YL P Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179 Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q+L KH I I + F+ + V + EP ++ L VN+ + + G GI Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGQSWV---VIEP-VTQLTVNNVTIAREAAIAGLGI 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P I + + LV +++D V YP+ K + F FI+ Sbjct: 236 TAVPSIIAQEAIEKGYLVSLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIY 288 >gi|319795068|ref|YP_004156708.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597531|gb|ADU38597.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 339 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 146/288 (50%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F VA SF+ AA+ L +S++++SR ++ LET G++L R R L+LT+ G Sbjct: 5 DLIKTFREVAFRRSFSRAADSLGMSKATVSRYVAELETRSGVRLLNRSTRSLSLTDAGQV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++E+ E T +LQ P G+LR++ + L + F+ LYPD+ + Sbjct: 65 LLDRSTELVAMAENTLNDLQAHGSHPRGRLRMSAPNGMIAGWLSDVMAAFINLYPDVYVS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ N+DID+ + D + + I +LI R+LV M A+P Y P ++ Sbjct: 125 LVFTNRDIDLIEEGIDIHLTGGR-IDDMNLIVRRLVQYDMVVCASPAYWARRGIPQVPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + +H+++++ + P F T RP S ++ N +++++ + G G+A +P Sbjct: 184 VGRHDILSYASM-PTTHLPFE---TDGRPHEVAVHSRMEANDAMALIELALRGVGVAYVP 239 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + + LV ++ + + +Y Y + N+ ++A +F+ Sbjct: 240 EPLAQSHLERGALVPVLREHMPRDHWLYAAYSQRRHNSAAMRAMLDFL 287 >gi|262171939|ref|ZP_06039617.1| transcriptional regulator [Vibrio mimicus MB-451] gi|261893015|gb|EEY39001.1| transcriptional regulator [Vibrio mimicus MB-451] Length = 266 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 132/263 (50%), Gaps = 9/263 (3%) Query: 32 SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91 ++I+R+I LE + ++L RHAR LTLTE G + ++ S + +L + E+ + Sbjct: 5 ATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGA 64 Query: 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151 SG++RI+ +L + ++ F+ YPDI I+L++ N+ D+ D R+ P + Sbjct: 65 SGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQR 123 Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211 SSLI RK+ + A+P YL N +P +EL +H L+ L+ + + V Sbjct: 124 DSSLIARKIGEVKDILVASPTYLANHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVV 183 Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT 268 + G + S L V + C G GI L+PD +++ D+ +LV+++ D + Sbjct: 184 NTDRGRFQASALNV-----VRSACSEGLGITLMPDVMLREYLDDGSLVQVLSDWSSNPRD 238 Query: 269 VYFCYPEALKNTGKLKAFRNFIF 291 +Y Y K++ F +F+ Sbjct: 239 IYMLYNHKDHQPEKVRLFIDFVI 261 >gi|221212071|ref|ZP_03585049.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221168156|gb|EEE00625.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 304 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 31/298 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF +VAR SF+ AA+ L +S S +S+++ LET +GI+L +R R +++T+ G +++ Sbjct: 13 LRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAGERVY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +E ++ + P G LR++++ G+N++ L E +P + ++L Sbjct: 73 AWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLNVRLE 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D++ + D IR+ I + LI ++L T H A+P YL P + +L Sbjct: 133 LFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGTPKQVDDLA 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLS------IMQYC 235 H + + D P G R+ +QV LS +Q+ Sbjct: 192 SHACLAIKER--------------DHPFGVWRLDARGETVSVQVTGPLSSNHGEVAVQWA 237 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI L + V+ D L R++ V P+ V+ YP L + K++A F+ Sbjct: 238 LAGRGIVLRSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFL 294 >gi|254506911|ref|ZP_05119050.1| AphB/LysR family protein [Vibrio parahaemolyticus 16] gi|219550196|gb|EED27182.1| AphB/LysR family protein [Vibrio parahaemolyticus 16] Length = 266 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 9/263 (3%) Query: 32 SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91 ++I+R+I LE + ++L RHAR L+LTE G + + S + +L T E+ + Sbjct: 5 ATITRRIQALEDSLNLRLLNRHARKLSLTEAGERFYSECSPLLDRLTLTAEEISDECRGA 64 Query: 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151 +GK+RI +L + ++ +F+ YPDI ++L N + D R+ P + Sbjct: 65 AGKIRITAPSNLTKRMMMPMFNDFMKQYPDINLELTTSNHSEQLDPTEWDVIFRV-GPQR 123 Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211 SSLI RK+ ++ A+P YLK P +EL H+L+ L+ + + N V Sbjct: 124 DSSLIARKINSVEDILVASPEYLKTNPAPKHAEELHNHSLLKGAPLLKWQLSNQNGETVV 183 Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT 268 + G Q N+ + C G GI L+PD ++K D+ +LVR++ED Sbjct: 184 NNDKGR-----FQANALNVVRSACSDGLGITLMPDVMLKEFIDDGSLVRVLEDWSANPRD 238 Query: 269 VYFCYPEALKNTGKLKAFRNFIF 291 +Y Y K++ F +F+ Sbjct: 239 IYMLYNHKDHLPEKVRLFIDFVI 261 >gi|26989680|ref|NP_745105.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24984568|gb|AAN68569.1|AE016488_13 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 292 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 11/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F V GSF+ A +L++ Q ++S+Q+ LE +G +F R R L LT+QG Sbjct: 4 FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALTDQGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E+ +LE + +G LRIA + G+ + + FL +PD+QI Sbjct: 64 RFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHPDVQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L++ + D+ M+ D AIR+ ++S L+ L T YAAP YL +P Sbjct: 124 DLRLNDYNEDLLMENIDLAIRI-GLVKSEGLVAVPLGTSTRRVYAAPAYLDRHGQPREPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL HN I F +E ++ W T E I + N+ +I + + G GI+ Sbjct: 183 ELAGHNCIAF-----TLLEHYDRWHFTHRGEALEVAIKGNVTSNNSEAIREMVLGGLGIS 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P ++ + + ++++ T + V + + + + AF +F+ Sbjct: 238 LSPQWLFAADFEQGGVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFL 288 >gi|27382947|ref|NP_774476.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27356120|dbj|BAC53101.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 294 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 11/297 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF VA F AA +LHLS S+++R I+ LE +G +L R R +TLT+ G++ Sbjct: 5 EAMHVFVTVADLRGFAPAARKLHLSPSAVTRLIAALEEHLGARLLQRTTRQVTLTDVGTR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E +E +PSG+L ++ + G+ + + +L YP++ + Sbjct: 65 YLERARRILADVEEADGSAREERNRPSGRLVVSAPVGFGRLHVGPVMTAYLKRYPEVAGE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +++ D D A+R+ + SSL+ R++ + AAP YLK EP + + Sbjct: 125 LRLSDHLVNLVEDAVDVAVRIGH-LADSSLVARQVGEMRRIVVAAPGYLKRHGEPKTPEA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H I FG P F PR++ NS + +QY G G+ + Sbjct: 184 LASHQTIQFG---PSASWHFMQDGRDIEVTTNPRLTS---NSADAALQYAEAGGGVTRVL 237 Query: 246 DYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 Y + R ++ P+ ++ YP + + K++AF + + A +W+F Sbjct: 238 AYQAAEGLKRGRLKVVLAKYEQPALPIHVVYPTSRLLSAKVRAFVDLVVETA-EWRF 293 >gi|192292236|ref|YP_001992841.1| LysR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192285985|gb|ACF02366.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris TIE-1] Length = 315 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 7/290 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +DW+ + F VAR S AA +L + +++SR++ LE + LF R G TLT Sbjct: 8 IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 67 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + + + + + + G +RIA +G L + +F +YP Sbjct: 68 EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIADFNRIYP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQI+LI D + +D+S AD + +P L +K+ + YA Y P Sbjct: 128 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYATDAYFGGRSPP 186 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++EL+ H I F + E+ WL+ V RP P + + S ++ G G Sbjct: 187 TTVKELETHAFIDFIEDYIYSKEN-RWLSDVLRP---PH-TIFRSTSLVAQSIAVSAGQG 241 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA+LP Y+ N L +M ++ T + ++ E L + ++KA F+ Sbjct: 242 IAMLPSYVASGNAELFPVMPELFT-TRDIWLSVHEDLLHVARIKAVTTFL 290 >gi|254227673|ref|ZP_04921104.1| transcriptional regulator [Vibrio sp. Ex25] gi|151939715|gb|EDN58542.1| transcriptional regulator [Vibrio sp. Ex25] Length = 337 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 12/287 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G L R R L LTE G L+ Sbjct: 45 IRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGATLLQRTTRTLKLTEAGKVLY 104 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + + + G++RI LG++++ + +FL+ +P + I L Sbjct: 105 KQCETALHNIDQAVMAVVDDVEELRGEIRINCVGGYLGEDVVADIVAQFLIQHPQVNINL 164 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K + S+ I RKL+ + M YA+P YL+ P ++L Sbjct: 165 DFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPSYLETHGYPSHPKDL 223 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +KH +T G + E+ N + + I G+ R +V +++ + G+GI +P Sbjct: 224 EKHICLT-GSVTRWAFENTNTKQSTEHQIRGQLRCKSGRV-----MIKAALAGNGIIRVP 277 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + L + D PS Y +++AF +F Sbjct: 278 ALYCQQELQTGKLKEVFTDWSIPSVEFSLLYHHDRHQPKRIRAFIDF 324 >gi|115352578|ref|YP_774417.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170697665|ref|ZP_02888753.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|115282566|gb|ABI88083.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] gi|170137413|gb|EDT05653.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 300 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 143/298 (47%), Gaps = 11/298 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + V V +G+F A E + L+Q ++SR ++ LE VGI++F R AR + Sbjct: 1 MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ S + G+LR+ G +L + EFL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P++ +++ + ++ D+ D D A+R P + SS R L+ H+ A+ Y+ Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASAAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235 EP ++L D H + D P + W D + L VN +++ C Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVPFDATGRLTVNDTGALLGAC 237 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G G+A L + +D LV+++ + +F +Y + + + K++ F +F+ Sbjct: 238 VGGEGVAQLLELYARDILAEGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFV 295 >gi|258544031|ref|ZP_05704265.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC 15826] gi|258520728|gb|EEV89587.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC 15826] Length = 299 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 141/292 (48%), Gaps = 10/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + + F +SGSFT AA+QL L++S+I ++I+ LE + ++L R+ R L T++G Sbjct: 5 NLNDITAFVASVKSGSFTAAAKQLGLTRSTIGKRIARLEARLNVRLLQRNTRNLAPTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + V +L+ + L + S+KP G+L+I+ + LG+ +L L +FL YP Sbjct: 65 RLFYERCTAVLEELDNAEQCLAQRSIKPQGRLKISAPLVLGKTILPPLLADFLHRYPQTS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L + D+ D D A+R P Q SLI R + M AAP YL P S Sbjct: 125 VELSLTDDYADLISDGYDLALRNGNPPQCDSLIARTVAQQKMLTCAAPGYLVQHGTPQSP 184 Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H + F G + + F G R S ++ ++++ + GI Sbjct: 185 DDLAHHQCLHFLHGGRVSRW--HFQQKGKETTFQGSGRFS---TDNGEALLELALSAFGI 239 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y+V+ D +L ++ D V YP + + K++A + + Sbjct: 240 VQLPHYLVQAALDAGSLKSVLSDFQPKPVPVMAVYPSRKQLSPKVRALVDMM 291 >gi|161523039|ref|YP_001585968.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348135|ref|YP_001941331.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160346592|gb|ABX19676.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189338273|dbj|BAG47341.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 300 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 31/298 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF +VAR SF+ AA+ L +S S +S+++ LET +GI+L +R R +++T+ G +++ Sbjct: 13 LRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAGERVY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +E ++ + P G LR++++ G+N++ L E +P + ++L Sbjct: 73 AWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLNVRLE 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D++ + D IR+ I + LI ++L T H A+P YL P + +L Sbjct: 133 LFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGAPKQVGDLA 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLS------IMQYC 235 H + + D P G R+ +QV LS +Q+ Sbjct: 192 SHACLAIKER--------------DHPFGVWRLDARGETVSVQVTGPLSSNHGEVAVQWA 237 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI L + V+ D L R++ V P+ V+ YP L + K++A F+ Sbjct: 238 LAGRGIVLRSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFL 294 >gi|238020448|ref|ZP_04600874.1| hypothetical protein GCWU000324_00330 [Kingella oralis ATCC 51147] gi|237867428|gb|EEP68434.1| hypothetical protein GCWU000324_00330 [Kingella oralis ATCC 51147] Length = 294 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +SGSFT AAE+L++S S+ +S LE +G +L YR+ R L LTEQG + Sbjct: 7 MKVFCQVVQSGSFTRAAERLNISIPMASKHVSHLEKTIGAQLLYRNNRSLKLTEQGDAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R L + P G LRIA + + L + YPD++I+L Sbjct: 67 RDCQSALELLAQAAEHASAGANHPQGTLRIAAPVWFACDKFARMLAAYQSRYPDVEIELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D++ D D A+RL + + ++I ++L I + A P YL P + Q+L Sbjct: 127 LSNRHVDLNSDGEDLALRLSDSL-AENIIAKRLGNIPFYLVATPTYLARHGTPRAPQDLT 185 Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H I T+ DL + M ++ TV P+ E + S ++ N + GI +P Sbjct: 186 RHPAILPTYVDL-SRMMTEYQG-KTV--PL-EFQGSKMRSNHTQMVAALIRAHVGIGYMP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ D+ L+R++ D S Y Y K+++F +F+ Sbjct: 241 AWLADDDITTGRLIRLLPDCPMSSPPFYAVYANRQYMKAKVRSFIDFM 288 >gi|148975480|ref|ZP_01812351.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] gi|145964908|gb|EDK30159.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] Length = 300 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 151/296 (51%), Gaps = 12/296 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + VF V GSFTHAAE L++++S++SR+++ LE +G++L R R L LT + Sbjct: 1 MDLNAVTVFTQVVDCGSFTHAAEVLNMTKSTVSRKLAELEQHLGVRLITRSTRSLILTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + ++ + ++E+ + G L + ++LG +L + FLL YP++ Sbjct: 61 GERFYQSSLQMQEIMNQAELEVSANQDLIRGPLNVVLPVELGHQVLAKYIHSFLLEYPNV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L N+++DI + D ++ + + SSL+ R L T A+P YL+ P++ Sbjct: 121 TINLELTNREVDIIGEGIDLYAQIGELV-DSSLVSRYLTTSKRVLVASPKYLEQV-GPIN 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLG 238 + D +++ K W + GE + S L+VN+ + + CV G Sbjct: 179 TPK-DIKTPFRMIEVVNKAARLPKWELQLGD--GESELIQLPSQLRVNTITACLTACVDG 235 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A+LP++I +++ LV ++ + P +V Y + + K F +++ Sbjct: 236 LGLAVLPEFICREHFKTGRLVNLLPEYDMPQVSVSLVYADRQLMPKRKKVFIDYLL 291 >gi|269966704|ref|ZP_06180782.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B] gi|269828695|gb|EEZ82951.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B] Length = 328 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 12/287 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G+ L R R L LTE G L+ Sbjct: 36 IRSFVLIAQLGNFTKAAEQLSVSRSHVSRQITNLEQQIGVTLLQRTTRTLNLTEAGKVLY 95 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + + G +RI LG++++ + +FL+ +P + I L Sbjct: 96 KQCETALHNIDQAVMAVVDDVEDLRGDIRINCVGGYLGEDVVADIVAQFLIQHPQVSINL 155 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K + S+ I RKL+ + M YA+P+YL+ P ++L Sbjct: 156 DFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVKMGTYASPNYLETYGYPSHPKDL 214 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +KH +T G + E+ N + + I G+ R +V +++ + G+GI +P Sbjct: 215 EKHICLT-GSVTRWAFENTNTKQSTEHQIRGQLRCKSGRV-----MIKSALAGNGIIRVP 268 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + L + + PS Y +++AF +F Sbjct: 269 ALYCQQELQTGKLKEVFTNWSIPSVEFSLLYHHDRHQPKRIRAFVDF 315 >gi|259415674|ref|ZP_05739595.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] gi|259348904|gb|EEW60666.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] Length = 340 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 8/294 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LRVF + R T A + L + Q++ISR++ LE +G LF R A G LT Sbjct: 43 FDWNDLRVFIALHRMRRMTDAGKVLGIDQTTISRRVRALEKAIGTSLFLRRADGFELTAA 102 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G K+ E+ E + + + SG +R+ LG L L +F +P + Sbjct: 103 GEKILPFALEIEQASEQLHEAVSGQNKRLSGSVRVGAPDGLGTYFLPSILTQFQKDHPGV 162 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+++ ++ ++ A+ L P +S L+ RKL H+H + + Y+ P + Sbjct: 163 DIEVVSSSRAFRVASKEVHLALSLSLP-ESGRLLARKLGDYHLHFFGSADYVSEHGVPQT 221 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + EL H L+ + D++ F+ +G R +S + + GSGI Sbjct: 222 LDELKDHRLVGYIADML------FSPEVRYLEELGLRRTVRFASSSMAAQKEAIRAGSGI 275 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +LP ++ ++P+LV ++ + TV+ +A ++ +++A F+ AR Sbjct: 276 GILPRFMALNDPSLVPVLTNEYLLKRTVWIVGHQATEDLARVRAVSEFLQKAAR 329 >gi|325527084|gb|EGD04503.1| LysR family regulatory protein [Burkholderia sp. TJI49] Length = 294 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G + Sbjct: 9 AFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + L + + S+ +P GKLR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDLRDAEATVSASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRARYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR P+ SSL+ R+L A P YL P + +EL H Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFGFVLCATPAYLARAGTPRTPRELAAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + P + +W D + + N+ ++ + G GI +PD++ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D LV +++D +P + + + KL+ F +F+ Sbjct: 245 RDALEQHALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|221198951|ref|ZP_03571996.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221205211|ref|ZP_03578227.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221175002|gb|EEE07433.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221181402|gb|EEE13804.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 300 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 31/298 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF +VAR SF+ AA+ L +S S +S+++ LET +GI+L +R R +++T+ G +++ Sbjct: 13 LRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAGERVY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +E ++ + P G LR++++ G+N++ L E +P + ++L Sbjct: 73 AWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLNVRLE 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D++ + D IR+ I + LI ++L T H A+P YL P + +L Sbjct: 133 LFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGTPKQVGDLA 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLS------IMQYC 235 H + + D P G R+ +QV LS +Q+ Sbjct: 192 SHACLAIKER--------------DHPFGVWRLDARGETVSVQVTGPLSSNHGEVAVQWA 237 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI L + V+ D L R++ V P+ V+ YP L + K++A F+ Sbjct: 238 LAGRGIVLRSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFL 294 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072445|gb|ADJ61844.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 146/290 (50%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L+L +++++ + GLE+ + ++L R R ++LT G+ Sbjct: 4 FQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ T+ + + P G+LRI +G+ +L NL +F YPDI++ Sbjct: 64 AYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR+ + +Q SS++ R++ T AAP YL+ P +I+ Sbjct: 124 MMGMGDRPVDLVQEAVDCVIRIGE-LQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTIE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L +H + + + +W V+ E +++ L VN + ++ + G G+ Sbjct: 183 DLQQHKAVHY--FSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y+V D LV ++ + Y + K++AF +++ Sbjct: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWV 290 >gi|238894943|ref|YP_002919677.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|329999705|ref|ZP_08303480.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|238547259|dbj|BAH63610.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328538236|gb|EGF64382.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 295 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 126/267 (47%), Gaps = 7/267 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VVAR SFT AA QL +SQS++S + LET + ++L R R + TE G +L + Sbjct: 12 FMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAGERLIQRL 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 ++E L+++ +P+G LRI +L LK F+L YPDI I++ +DN Sbjct: 72 GPHLEEIEQALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDINIEITVDN 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI D D +RL + + + R + M +P YL+ P + +L +H Sbjct: 132 GLTDIVGDRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSPAYLQRAGTPQTPWDLAQHR 191 Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I +P + W A R I L +NS + G G+A +PD V Sbjct: 192 CINL--RLPTRGGLYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLGLAYVPDDCV 249 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273 + + LVR++ + TP+F Y Y Sbjct: 250 AEALASGRLVRVLAE-WTPAFPGYHLY 275 >gi|99081589|ref|YP_613743.1| LysR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037869|gb|ABF64481.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040] Length = 303 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 144/290 (49%), Gaps = 18/290 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW+++R F A GSF+ AA L+ +Q ++ RQ+ LE +G+ +F R + L LT Sbjct: 10 INFDWNQVRSFLATAEEGSFSAAARVLNQTQPTVGRQVGALEEALGVTVFERVGKSLRLT 69 Query: 61 EQGSKL--H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G++L H R ++V +K+ T Q SV+ G++RI + + L LK+ L Sbjct: 70 TAGTELLVHVREMADVANKISLTATG-QSQSVE--GQVRITASDVMSTYQLPAMLKQIRL 126 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 P ++I ++ N D+ AD AIR +P Q LI R + H YAA YL Sbjct: 127 AAPRLEIDVVAANDLRDLHRREADIAIRHIRPTQ-PDLIARLVAQASAHLYAASSYLDQV 185 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236 P S +EL + + ++FGD + + + N P G P ++ S+ ++ + + Sbjct: 186 GRPRSEEELAQLDFVSFGD-VERFIGFLN-------PAGIPVTRKNFRIGSHSGVVSWEL 237 Query: 237 L--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + G G++++ D + P + RI+ D +F ++ L +++ Sbjct: 238 VRQGFGVSVMSDDVAAPTPGIERILPDRDPFAFPIWLATHSELHTARRIR 287 >gi|194289699|ref|YP_002005606.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223534|emb|CAQ69539.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 302 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 9/291 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD L+ F V +SGS AA LH++ S++ R+++ LE +G LF RHA G +T G Sbjct: 5 DWDDLKYFLAVGQSGSLAGAARALHVNHSTVLRRLARLEDTLGTLLFERHATGYAMTLAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + V +++ Q +L + SG LR+ TT L LL F L+P IQ Sbjct: 65 EALAQRLAGVGEQIDAAQRQLSGLDSQLSGPLRVTTTDTLLGALLMPLFAAFRALHPRIQ 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QL+++N + +S AD AIR P + L+ R++ + YAA YL+ P Sbjct: 125 LQLVVNNSFLSLSRREADMAIR---PANTPPEYLVGRRIGRLQTAPYAARSYLQQLGLPA 181 Query: 182 SIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + + + ++P + + + + EPR + +S +++ G G Sbjct: 182 AADSPALSDWPAYDWVVPDEALSHLAQARWIREHVPEPR-RVVSADSLVAMADAVRHGMG 240 Query: 241 IALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L + D+P LVR+ D + +P+ L+++ +++A +F+ Sbjct: 241 AGMLLCLLAGDDPALVRLAPPDAAMDTDLWVLTHPD-LRHSARVRALADFL 290 >gi|217979336|ref|YP_002363483.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] gi|217504712|gb|ACK52121.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] Length = 299 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 14/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L VF V S AA +L LS ++S+ ++ LE +G +LF R +R L LT+ G Sbjct: 6 DFEGLAVFAKVVEMRSIAGAAAELGLSSPTVSKALTRLERRLGARLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L ++ E + L S P G +R+A + G + L +FL YPD+ Sbjct: 66 RELTDRARQLVADAEAAETALIAQSSTPRGLVRLAAPMSFGLREVAPILPDFLTRYPDVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L++ +D+ + D A+R+ + SSL+ R+L + AAP YL+ P Sbjct: 126 IDLHLNDALVDLIGEGFDAALRVGL-LPDSSLVARRLCATPRYTVAAPSYLERHGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H + + L + F A+V RP G+ L+ N+ ++M + G Sbjct: 185 AHLSDHVCLGYTYLAAPDVWRFKNQKGEEASV-RPKGQ-----LRANNGDALMPALIAGL 238 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LP++IVK+ + L R++ + +TP +++ P +++ +F+ Sbjct: 239 GVGDLPEFIVKEALADGRLERVLANWLTPQGSLFLVTPPGGPRPARVELLGDFL 292 >gi|192360613|ref|YP_001983795.1| LysR family transcriptional regulator [Cellvibrio japonicus Ueda107] gi|190686778|gb|ACE84456.1| transcriptional regulator, LysR family [Cellvibrio japonicus Ueda107] Length = 299 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 136/302 (45%), Gaps = 37/302 (12%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F V R GSF AA QL +S S +SR +S LE ++G +L YR R + LT+ G Sbjct: 4 WESVEAFIQVIRQGSFAGAARQLQVSNSHVSRLVSQLELQLGTQLLYRTTRQIRLTDAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ L ++ L +PSG L+I G + + +F L YP +++ Sbjct: 64 VYFDHCCHLFDGLREAELLLHHYRDQPSGLLKITAATTFGDKFIAPVVNDFQLRYPQLKV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + N+ +++ + D IR+ ++ S+L+ ++L + +P Y + P S+ Sbjct: 124 SMYFSNRQVELIEEGFDVGIRM-GVLRESTLVAKRLCDRREYIVGSPAYFRRSPAPQSLA 182 Query: 185 ELDKHNLI--TFG-----------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231 ELD HN + T G DL+ + NW Q NS ++ Sbjct: 183 ELDSHNCLVGTRGYWLLSDKGQRKDLVVRG----NW----------------QANSGPAL 222 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G G+A LPDY V + + L ++E V+ YP+ K++ F + Sbjct: 223 LDAALKGIGLAQLPDYYVDEFLGDGRLQSVLEQHRYSDTGVWVVYPQQRHLAPKVRLFID 282 Query: 289 FI 290 F+ Sbjct: 283 FL 284 >gi|300704767|ref|YP_003746370.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299072431|emb|CBJ43776.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 290 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 137/295 (46%), Gaps = 17/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AAE + + S++SR+I LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E +PSG LR + +D L + EF LYP I Sbjct: 65 YFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ P + S LI R L ++ H YA+P YL EP + Sbjct: 125 FDLTPRRVDLVSEPFDVAIRM-GPSEDSQLIARPLASLTPHLYASPGYLDRSGEPRKPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L++H ++ ++D ATV +G +NS I + VL GI L+P Sbjct: 184 LERHECLSILKAGSWTLQDGKRTATVS--VG----GRFTLNSVGMIRRLAVLDLGIVLMP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI-FLKAR 295 + IV D + L RI+ VY A+ T L A + FI FL+AR Sbjct: 238 EEIVADELASGKLRRILPGWHGTPMPVY-----AITETRLLPAKTQRFIEFLRAR 287 >gi|254521789|ref|ZP_05133844.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219719380|gb|EED37905.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 316 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 143/294 (48%), Gaps = 16/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F + G AAE L +S + +S+Q+ LET +G+ L R R ++LTE G Sbjct: 19 FNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLETHLGVVLLQRTTRRMSLTETGH 78 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + +L+ + + E + +G+LR+ + L L FL +P + + Sbjct: 79 AYYRECCRLLDELDALERGIAEQRGEVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQLSL 138 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+++++ +D + D ++RLR + S L+ R+L ++ AAP YL+ P ++ Sbjct: 139 DLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLQQHPVPQAVD 198 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241 +L H+++ + +P + L P G+ I+ + VN+ L + V G GI Sbjct: 199 DLQAHSVLAYS--LPDSPGSWPLLG----PDGQVTITLPARVTVNNSLMLRDLLVAGMGI 252 Query: 242 ALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ P+L R ++ D P V+ YP + K++AF +F+ Sbjct: 253 GALPSFLAA--PSLARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFL 304 >gi|86356442|ref|YP_468334.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280544|gb|ABC89607.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 294 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 14/291 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA SF AA+ L +S ++SR +S LE +G +LF R +R L LT+ G +L Sbjct: 1 MFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDS 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +Y + E + +E + +P G +R+A +D G L L +F L+P+I I L + Sbjct: 61 AARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEISIDLHMS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI D D A+R+ + SSL+ R+L + AAP YL P +EL H Sbjct: 121 DAVVDIVGDGFDAALRI-AVLPDSSLVARRLTPVDRFILAAPAYLDRYGVPEHPRELAAH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALLP 245 + + + + +D L + G+ + L+ + +++ + G G+ LP Sbjct: 180 HCLGYAY---RARQDVWRLRNGE---GKEEVIVPSGSLRATNSQALVPMALRGLGVIELP 233 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +++ D + L I+ D P+ +YF P A K++ +F+ + Sbjct: 234 EFLAHDHLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMAR 284 >gi|298369439|ref|ZP_06980757.1| contact-regulated protein A [Neisseria sp. oral taxon 014 str. F0314] gi|298283442|gb|EFI24929.1| contact-regulated protein A [Neisseria sp. oral taxon 014 str. F0314] Length = 300 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 5/249 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L VF V SGSF+ AAE+L L+ S++SR + LE ++ L R R L LT Sbjct: 1 MKTHSDELAVFVQVVESGSFSRAAERLGLANSAVSRTVKRLEDKLSANLLNRTTRQLRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++ H +E + E+ + P G LR+ + +L+ ++ F +P Sbjct: 61 EEGCRFFERARQILHDIEAAETEILSAGGAPQGVLRVDSATPTLLHLVAPLVRPFCERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L ID+ D AIR + S+L R L + AAP YL P Sbjct: 121 QVSLLLTSSEGYIDLIERRVDIAIRA-GSLHDSALRARHLFDSRLKLVAAPDYLARRGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L +H LI F + PK + ++ + T P + L NS +I + C+ G+G Sbjct: 180 QTVADLSQHTLIGFSE--PKTLNNWPFADTGHTPYAA--VPQLSANSGETIRRLCLEGNG 235 Query: 241 IALLPDYIV 249 IA L D+ Sbjct: 236 IACLSDFTA 244 >gi|294141401|ref|YP_003557379.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293327870|dbj|BAJ02601.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 326 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/294 (30%), Positives = 137/294 (46%), Gaps = 18/294 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + ++ + +S AA++L L ++++R++ LE +G KL YR AR +T +G Sbjct: 23 DDIALYIHIVQSRGLASAAKRLGLPAATVTRRLQKLEASIGCKLIYRSARQFAVTAEGEV 82 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ E+ E TQ L SGKL++ ++ LLQ F+ YPDIQ+ Sbjct: 83 YYQAFYELVQTFEATQRSLSAELHLLSGKLKVLAPTNISTGLLQPMWSSFIKSYPDIQLD 142 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+N + DI AD A+R+ P + S L Q+ L I A+ YL N P + E Sbjct: 143 LSLNNANQDILAAQADIALRI-GPQKDSQLYQKGLGFIPTVLVASTDYLNNHGAPEQLDE 201 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSG 240 L H +I IP W T R G P I+ VN Q+ G G Sbjct: 202 LSDHRIIGVNS-IPI------WTLT-HRVSGHLVELTPSINTF-VNDIKVASQWACDGIG 252 Query: 241 IALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 IALLP + +D + NLV+++ D P +Y +P + K K R+F+ Sbjct: 253 IALLPISEVYQDLHDGNLVQLLTDWSGPRRELYAVWPSGRLLSAKAKCLRDFML 306 >gi|157376708|ref|YP_001475308.1| carbonate dehydratase [Shewanella sediminis HAW-EB3] gi|157319082|gb|ABV38180.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3] Length = 309 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 7/293 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F V +SG F+ AAE + S S +S++I+ LE +G++L R R + LT +G Sbjct: 7 FDGIVIFTQVVKSGGFSAAAESMGHSSSYVSKEINKLEARLGVRLLNRTTRSIGLTPEGE 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E + + V P G+L+I++ I + LQ L E++ YP++ + Sbjct: 67 AYYQQCQQLMVDAEQAVELITQHDVDPKGRLKISSPIGFANSYLQPILSEYMQRYPNVSL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L+++ +D+ + D AIR ++ SSLI RK+ + + A+ Y+ P Q Sbjct: 127 ELDLNDRRVDVVAEGYDLAIRAALQLEESSLICRKIFSCKGYTVASKAYISRHGRPHHPQ 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL +H+ + + + K + + + PI + R L N+ + + + G GI Sbjct: 187 ELSRHHCLCYSNH--KTPGRWQYKDSEGDPIQVDVRQKVLSNNAEIQ-LALTLSGHGICR 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LP + + D + L + + P VY YP + K++AF + + K Sbjct: 244 LPKFYMTDALASGQLEILFPALPAPEIDVYVVYPSRKHLSPKVRAFIDLVVEK 296 >gi|115359722|ref|YP_776860.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285010|gb|ABI90526.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 307 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 149/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++I+ LE ++G +L +R R +T+TE G + Sbjct: 8 DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G++++ L +F YP + ++ Sbjct: 68 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L T H A+P YL P ++ + Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRTLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233 L H+ + + D P G R+ + ++V LS +Q Sbjct: 187 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + + L R++ D I P+ ++ YPE + + K++ +F+ Sbjct: 233 WALAGRGIVLRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFL 291 >gi|107024466|ref|YP_622793.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116688155|ref|YP_833778.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105894655|gb|ABF77820.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116646244|gb|ABK06885.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 294 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G + Sbjct: 9 AFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + S+ +P GKLR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR P+ SSL+ R+L A P YL P + +EL+ H Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTPRELEAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + P + +W D + + N+ ++ + G GI +PD++ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLTLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244 Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D LV +++D +P + + + KL+ F +F+ Sbjct: 245 RDALEYGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|325168451|ref|YP_004280241.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064174|gb|ADY67863.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 299 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 146/298 (48%), Gaps = 13/298 (4%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + VF V +G+F AA+ L L+ S +SR ++ LE VG++LF R R + Sbjct: 1 MTFDTRLLTGVGVFGAVMEAGNFVRAADVLGLTPSGVSRAVARLEQRVGVRLFDRSPRKV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLTE+G++ H + LE E S+ G++R++ + LL + EFL Sbjct: 61 TLTEEGARFHARIMPLLAGLEEAASEAAGSAAFVGGRIRVSIDPWFARMLLAPRIGEFLA 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYP + + L N ++ M AD A+R P SSLI RKL+ + + AAP YL Sbjct: 121 LYPALTLDLTTSNYREEM-MSGADVAVRFGPP-DESSLIARKLLDVPVLTCAAPGYLDRY 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 P++ +L +H+ I F D P+ F W D E +++ L ++ + + C+ Sbjct: 179 GVPVTPHDLMRHDCILFRD--PQTGRPFTWEFQGDNGAIEIKVAGRLVMDDPSAAVAACL 236 Query: 237 LGSGI----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI A+ D ++ L I+ + F +Y +P K++AF +F+ Sbjct: 237 AGQGIFQSFAIGLDEWLESG-ALTTILTEWSGERFPLYAYHPSRHMPPAKVRAFLDFV 293 >gi|24372428|ref|NP_716470.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24346402|gb|AAN53915.1|AE015528_8 transcriptional regulator, LysR family [Shewanella oneidensis MR-1] Length = 303 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+I+ LE E+G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + DI + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKTRGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +EL H+ I G + P + + R + +VNS + + Q + Sbjct: 182 KELSDHSGILLGTSRSAPIWPLGKGTRKTMVSFQRKV--------RVNSPIMVKQLALDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L + K N LV I+++ F VY Y + + AF +F F+K Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPMEPFKVYGVYSSRRQLATNISAFLDF-FVK 290 >gi|39936450|ref|NP_948726.1| LysR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39650305|emb|CAE28828.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris CGA009] Length = 338 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 19/296 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +DW+ + F VAR S AA +L + +++SR++ LE + LF R G TLT Sbjct: 31 IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 90 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + + + + + + G +RIA +G L + +F +YP Sbjct: 91 EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIADFNRIYP 150 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQI+LI D + +D+S AD + +P L +K+ + YA Y P Sbjct: 151 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYATDAYFGGRSPP 209 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +++EL+ H I F +ED+ WL+ V RP P + + S ++ Sbjct: 210 TTVKELETHAFIDF-------IEDYIYSKENRWLSDVLRP---PH-TIFRSTSLVAQSIA 258 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA+LP Y+ N L +M ++ T + ++ E L + ++KA F+ Sbjct: 259 VSAGQGIAMLPSYVASGNAELFPVMPELFT-TRDIWLSVHEDLLHVARIKAVTTFL 313 >gi|315181449|gb|ADT88362.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC 11218] Length = 306 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 21/300 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V GSF+ AAE+L +++S++S++++ LE E+GI+L R R L+LT Sbjct: 2 MDNTFAAIPIFVAVVECGSFSSAAEKLSITKSAVSKRVTQLEDELGIRLLNRTTRKLSLT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + S+ + + E +P GKL+I + G + + EFL YP Sbjct: 62 EAGERYYYHVSQALSFAQQGSDAVTELQGEPQGKLKITAPMSFGVLHVATLIAEFLTRYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I L L+++ +D+ D AIR+ + S+L+ ++LV +P YL P Sbjct: 122 KVEIDLQLEDQMVDLVQGGFDLAIRIGH-LPVSNLVAKRLVRCRSVLCCSPDYLSRHPAP 180 Query: 181 LSIQELDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 +L +HN + + + DF + T + L VN+ +I + Sbjct: 181 QKPADLLQHNCLVYSYFRGGSEWTFTQNGADFKVIPTGN----------LSVNNSEAIRR 230 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI LP ++V + L IM D P +Y +PE K++AF FI Sbjct: 231 ALLDGLGIGQLPTFLVSKDIRAGKLHAIMTDYPLPEHAIYAVFPERKHLPHKVRAFMTFI 290 >gi|319424784|gb|ADV52858.1| transcriptional regulator, LysR family [Shewanella putrefaciens 200] Length = 323 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 40/281 (14%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS + Sbjct: 11 VFATIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +++T+ +L PSG+L+IA + G LL + L +P I + L++ Sbjct: 71 CRKVISIVDSTEQKLNNLKGIPSGELKIAAPVGFGGGLLSEPFQYLLATHPQISLNLVMQ 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLSIQEL 186 + IDI D D AI + P+ S+LI R L M +P YL N + P + Sbjct: 131 DGPIDIVNDGIDLAICI-GPLSDSNLIARHLADWRMLLCTSPDYLPMHHNIKHPSELAVF 189 Query: 187 DK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-------VNSYLSIMQYCVL 237 ++ HN T G+L+ P + C + VN+ +++Q + Sbjct: 190 NRINHNY-TKGELLTH----------------HPSLECFELTGQRISVNNMQTLIQLTLD 232 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITP-----SFTVYFCY 273 G G A LP+ V D + + V+ P SF Y Y Sbjct: 233 GLGYAALPEPEVLD-----YLDKGVLVPLLPEWSFNTYSVY 268 >gi|306842646|ref|ZP_07475293.1| LysR family transcriptional regulator [Brucella sp. BO2] gi|306287216|gb|EFM58709.1| LysR family transcriptional regulator [Brucella sp. BO2] Length = 297 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +P+G +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|300312244|ref|YP_003776336.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075029|gb|ADJ64428.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 129/249 (51%), Gaps = 7/249 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS ++LR F V +G+ + AAE L + S +SR +S LE ++G L R R + LT Sbjct: 1 MSLQSEELRTFVAVVEAGTLSAAAELLAQTTSGVSRALSRLEDKLGASLLTRTTRRMELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + +E+ Q ++ + KP GKLR+ + + + ++ +F YP Sbjct: 61 EEGRAFLEQARAILAAMESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++L +++ ID+ AD AIR+ + +Q SSL R L + ++ A+P YL EP Sbjct: 121 DIELELTTNDRFIDLVEHRADIAIRIGE-LQDSSLHARALSSARLNVVASPAYLARHGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239 S++ L++H LI F P + + + DR P I + +S +I + G Sbjct: 180 ESVEALEQHQLIGFSQ--PDQLNHWPLRHSAGDRYQTRPAI---RASSGETIRHLALQGQ 234 Query: 240 GIALLPDYI 248 GIA L +++ Sbjct: 235 GIACLSNFM 243 >gi|170722406|ref|YP_001750094.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169760409|gb|ACA73725.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 299 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 146/293 (49%), Gaps = 15/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F V GSF+ A +L++ Q ++S+Q+ LE +G +F R R L LT+QG Sbjct: 4 FDSMRIFARVVERGSFSAVARELNMGQPAVSKQVRALEHYLGGPVFARSTRHLALTDQGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E+ +LE+ + SG LRIA + G+ + + FL YP+++I Sbjct: 64 RFYSHCQEILRQLESATRSFASGQEQISGPLRIAAPVSYGRLCIAPLIGTFLQRYPEVRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L++ + D+ ++ D AIR+ ++S L+ L T YA+P YL+ PL Sbjct: 124 DLRLNDHNEDLLVENIDLAIRI-GVVKSEGLVAVSLGTTKRGVYASPTYLQCHGLPLEPG 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 EL HN I F +E ++ W T R E I+ + NS +I + + G G Sbjct: 183 ELAAHNCIGF-----TLLEHYDRWRFT--RGTDEFDIAITGNVTSNSSEAIREMVLCGLG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I+L P ++ + + ++ ++++ + V + +++ + AF +F+ Sbjct: 236 ISLSPQWLFEADVERGSVQSVLDNYQATALPVSAVFSRERRHSARAMAFIDFL 288 >gi|13471571|ref|NP_103137.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022313|dbj|BAB48923.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 302 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 137/292 (46%), Gaps = 8/292 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ +L+ F + GSF AA +L +S ++S+ I LE VG++L R R ++ T G Sbjct: 5 EFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSATAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + +LE+ ++ + +P+G LRI + L +F YPDI Sbjct: 65 DALFSRLAVAFGELESAIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAYPDIA 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + +I+D+ DI D IRL + ++ + + + M A AAP YL+N P Sbjct: 125 LTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKLSEDLQMAAVAAPAYLENRAIPRHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 QEL +H I F P + W R E I L VN ++ + G GIA Sbjct: 185 QELHQHQCIKFE--WPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVGIA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFI 290 + +Y V+ + LVR +E +PSF ++ Y P + L+AF +F+ Sbjct: 243 YMFEYQVRPWIEQGRLVRFLE-AWSPSFPGFYLYHPSSRHVPPALRAFIDFM 293 >gi|113968866|ref|YP_732659.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|113883550|gb|ABI37602.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] Length = 317 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 9/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L L+++++SR+I+ LE++ G +L +R R L LTE Sbjct: 1 MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + +++ L++ + +L G L+I I+LGQ L +FL LYPDI Sbjct: 61 GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ L N+ +D+ + D ++ + L LV + A+P YL P Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179 Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q+L KH I I + F+ + V + EP ++ L VN+ + + G GI Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGQSWV---VIEP-VTQLTVNNVTIAREAAIAGLGI 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P I + + LV +++D V YP+ K + F FI+ Sbjct: 236 TAVPSIIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIY 288 >gi|317492732|ref|ZP_07951157.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919255|gb|EFV40589.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 302 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 139/286 (48%), Gaps = 4/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA SF+ AE+L L + S+S I LE + G +L +R R +TLT+ G + + Sbjct: 8 MQVFVSVAELSSFSRTAERLGLPKGSVSGAIQQLENQFGTQLLHRTTRKVTLTQDGHRCY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + SS SG+LR+ L + ++Q +L EFL+ +P+++++L Sbjct: 68 ERCKGLLADIDELESLFRTSSAPLSGRLRVDMPSGLAKIVIQQSLAEFLMAHPELELELS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ +Q S LI R L + M A+P YL+ P + +L Sbjct: 128 SSDRRVDLIQEGFDCVVRV-GALQDSGLIARPLGQLQMVNCASPAYLQKYGCPQNATDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + + F ++ L VNS S C+ G GI +P Sbjct: 187 SHQMVHYQNAQVGHSDRFEYVTAQGDVQQVEMQGALTVNSTESYSAACIAGLGIIQVPII 246 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ D LV I+ + P+ V YP +++ F +++ Sbjct: 247 GVRHALDTGTLVAILPQLSPPAMPVSLLYPHRRNLARRVQVFMDWM 292 >gi|293395364|ref|ZP_06639648.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422048|gb|EFE95293.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 309 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GSFT AA+ L L + ++S+ I LE E+G+KL +R R L++T +G + + Sbjct: 9 ISIFIQVVEQGSFTKAADILQLHRPAVSKAIQQLEDELGVKLIHRTTRKLSVTTKGDEFY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ S++ P G+L++ + L LL +L +F LYPDI + L+ Sbjct: 69 QRAKHLLAEVDGMMANYS-STLPPRGRLKLDVPLALAHTLLIPHLAQFKSLYPDIDVVLV 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +K D+ + DC +RL + +Q SS I R+L I M AAP YL+ +P ++ EL+ Sbjct: 128 SSDKKTDLIAEGVDCVVRLGE-LQDSSFISRRLGEIRMVTCAAPAYLQRYGKPATLTELE 186 Query: 188 KHNLITF 194 +H + F Sbjct: 187 QHQAVNF 193 >gi|71280508|ref|YP_268408.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71146248|gb|AAZ26721.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 295 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 137/275 (49%), Gaps = 16/275 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSFT AAE+L LS+S +S+Q+S LE E+G +L YR R L+L+++GS+ + Sbjct: 7 METFSAVVEAGSFTGAAEKLGLSKSFVSKQVSTLEVELGCRLLYRTTRTLSLSDEGSQFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + E + E+ + P GK+R+ L + L +F L YP+I++++I Sbjct: 67 NHCKIIMAEAENARAEVMDRQGAPRGKIRMTIPQSLIISGFGQLLIDFQLQYPEIKLEVI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + D+ + D A+R+ + ++ SSLI R+L+ A+ Y+K EP +L Sbjct: 127 ASGRIEDLVKEGIDIALRVGQ-LEDSSLISRRLMDCTFQVVASSDYIKKWGEPFQPADLM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242 +HN + +GD N P GE I+ +++S +++ + G GI Sbjct: 186 QHNCLIYGD------SKINKGWPFRSPSGES-ITVKAKGNFISNDGGLVVEGMLNGLGIG 238 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYP 274 P ++ ++ R ++ D P + YP Sbjct: 239 FGPSFLFNEHVEKGRLKLLLSDYYQPPTAISALYP 273 >gi|295676718|ref|YP_003605242.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436561|gb|ADG15731.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 309 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 139/305 (45%), Gaps = 22/305 (7%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + + V + GSF A E L +SQS +SR ++ LE +GI+LF R R + Sbjct: 1 MPFDERVLNGMGVLTAIVDCGSFAAAGEALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + LE + + G+LR+ + +L L F+ Sbjct: 61 TLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGSFID 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+Q++LI ++ D+ D D AIR P S+L+ RKL+ + AAP YLK Sbjct: 121 KHPDLQLELITRDQLGDMVADGFDVAIRFGDP-PVSTLVARKLLDTRILTVAAPSYLKKH 179 Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229 +P + EL+ +H I F D P F W R P G L VN Sbjct: 180 GKPENPAELEDGRHVCIKFRD--PLTGYPFTWEFHRGRKKLALTPQGR-----LTVNDVG 232 Query: 230 SIMQYCVLGSGIA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ C+ G GIA L + + L+ + D + +Y YP K++AF Sbjct: 233 TLHSVCIAGQGIAQILALGAESLLASGKLIELFPDWGDEVYPLYALYPSRHHPPAKVRAF 292 Query: 287 RNFIF 291 +FI Sbjct: 293 LDFIL 297 >gi|167033005|ref|YP_001668236.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859493|gb|ABY97900.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 298 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 9/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A + L +S S++ ++++ LE +G++LF+R R +TLT +G+ Sbjct: 9 VFNRVAETRSFVAAGQSLGISASAVGKRVARLENRLGVRLFHRSTRSITLTAEGTLFLDR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T+ EL ++S P G+LR++ G L+ L EF+ LYP +++ L Sbjct: 69 SRRILAEIEATEQELSQASETPRGRLRVSMPQVTG--LVMPALAEFMALYPQVELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R +P+ S L + L A+P YL+ PL +EL H Sbjct: 127 DRMVDIVGEGFDVVMRGGQPVD-SRLNAKFLGHFQHRLVASPDYLRERGTPLHPRELATH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDYI 248 + + P + W + P I V +++ + + V GI LPD+ Sbjct: 186 TCLHY--RFPSNGKLETWPLRQEHPEHAYDIPISMVCNHVETRVCFAVNHRGITCLPDFT 243 Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 V N +LV +++D + + Y +P KL+ F +F+ Sbjct: 244 VGRELGNGSLVSVLDDFMEQRGSFYLLWPSGRHMPPKLRVFIDFML 289 >gi|270261513|ref|ZP_06189786.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044997|gb|EFA18088.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 296 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF AAE L L S++S I LE + ++L R R ++LT +G++ Sbjct: 7 MQIFVRVAEAGSFILAAETLSLPASTVSSTIKNLEKYLQVRLLNRTTRRVSLTTEGAQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E T+ L +S +P G+LR+ + ++ NLK+F YPDI + + Sbjct: 67 AQCREILELIEHTESSLTDSVKRPQGRLRVDMPGGIAHFVVMPNLKDFYRRYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D+ + DC IR + S+L+ R L AAP YL+ P + ++L Sbjct: 127 VNDRQVDLVQEGVDCVIRTGN-LNDSTLVARPLGQFRWVTCAAPAYLRENGIPQTPEDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I + + + + + ++ I P VN ++ C+ G G+A L + Sbjct: 186 HHRAIHYFSGHARRAGEMCFFSGTEK-ISVPVNGVAAVNETGLYIKMCLEGFGLAQLAER 244 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V ++ L+ +M D S V YP + ++AF ++I Sbjct: 245 VVAEHLQEGRLIEVMADWQPASVPVTLLYPHQRFLSPAVRAFADWI 290 >gi|260778266|ref|ZP_05887159.1| LysR protein [Vibrio coralliilyticus ATCC BAA-450] gi|260606279|gb|EEX32564.1| LysR protein [Vibrio coralliilyticus ATCC BAA-450] Length = 301 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 143/295 (48%), Gaps = 19/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++L VF+ + R GS T AA++L ++ S+S + LE ++G+ LF R R + LTE G Sbjct: 6 FNQLTVFHAIVREGSITKAAQKLEMASPSVSNALKALEEQLGLPLFTRTTRRIELTEAGR 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 LH TS+ L + + S PSGK+R+ T + Q LLQ EF YP+IQ+ Sbjct: 66 LLHLSTSDSMSDLSLAFESISDLSKVPSGKVRLTTPRFVYQYLLQPIYAEFCQRYPNIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183 ++ + + IDI + D IR ++ +I R+L A +A+P Y++ P + Sbjct: 126 EISISDAAIDILNEGFDLGIRFGDRVE-EGMIARQLTPAMREALFASPEYIEQYGMPDTP 184 Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 L +H L+ + L P + + TV+ P L VN ++ + G Sbjct: 185 GALKQHKLVQYRFISSNQLAPLELSNQGERLTVEMP------HALVVNDTGLMLDAALKG 238 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + D +V+D + LV ++E+ P +Y + KNT K K R I Sbjct: 239 LGIGRIVDPMVEDLFASKQLVPVLEEYWAPYSGLYVYFH---KNTQKAKRVRVLI 290 >gi|256112563|ref|ZP_05453484.1| transcriptional regulatory protein [Brucella melitensis bv. 3 str. Ether] gi|265994005|ref|ZP_06106562.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262764986|gb|EEZ10907.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 297 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRIMTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|330818714|ref|YP_004362419.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327371107|gb|AEA62463.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 311 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 25/310 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F A SGSF+ AA+++ + S++SR +S LE ++GI LF R RGL LTE G Sbjct: 7 IRAFLHAAESGSFSKAADRIAVKTSTVSRYVSELERDLGIALFNRSTRGLVLTEGGRVFR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V L+ + + P G LR+ G + +L EF YP I I + Sbjct: 67 EHAQAVLAALDEAREATSSLNASPRGLLRVTMPRAFGLRHVIPHLPEFTARYPGIDIDAV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D AIR+ + S LI R+L A+P YL+ P + L Sbjct: 127 LSDETVNLIDNGIDLAIRI-GVLPDSQLIARRLAMHRRIVCASPTYLEQHGAPDTPAALA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H ++ F P +D W A VD P L+ + ++ Q + G Sbjct: 186 GHEVLRF----PLMPDDRWWFAARAPRDEEQVDEPFSVQLRGRLRADDTDALRQLAIAGC 241 Query: 240 GIALLP----DYIVKDNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI- 290 GIALLP + ++D LV ++ D + ++ YP + K++AF +F Sbjct: 242 GIALLPVWALGHALRDG-RLVHLLADWDVQTARTASAIWAVYPPKKTVSSKVRAFIDFYA 300 Query: 291 --FLKARDWK 298 + + DW+ Sbjct: 301 DRYARLVDWE 310 >gi|313106317|ref|ZP_07792561.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310879063|gb|EFQ37657.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 371 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA L ++ +++S+ I+ LE E+ +KLF+R RG++L+E G + H Sbjct: 79 LHAFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 138 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 T + Y L + L ES +PSG+LRI + + L +NL + L EF+ YP +Q+++ Sbjct: 139 EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 197 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +DI + D IRL +Q + + + A P YL P S+ +L Sbjct: 198 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADL 257 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGI--AL 243 D H + F P+ W D E +S V++ +I++ G+GI A Sbjct: 258 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLSARFVSTDTETIIEAARAGAGIAQAF 315 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + + D LV ++ P ++ Y KL+AF + R+W+ Sbjct: 316 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 368 >gi|298489036|ref|ZP_07007059.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156534|gb|EFH97631.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 302 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 141/304 (46%), Gaps = 20/304 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 ++ D L VF V + G+FT AA +L +S S++ + I GLE +G++L R R +T TE Sbjct: 9 TYKLDDLAVFATVGQEGNFTRAAARLGVSASAVGQTIRGLEERLGVRLLTRTTRSVTPTE 68 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G KL R + ++ E S +PSG +RI+ + +L LK + YP+ Sbjct: 69 AGDKLLRGLVPLLDEINAQVDAALEYSERPSGTVRISADEFAARAILWPRLKSVMAHYPE 128 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I+LI D DI + D +RL I + + + M A+P YL P Sbjct: 129 ITIELITDYGMTDIVAERFDAGVRLGGTIAADMIASPISGEMRMVTVASPEYLSRHPAPQ 188 Query: 182 SIQELDKHNLI-----TFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYC 235 + +EL H I T G L P +F+ R +G P I +NS I+ C Sbjct: 189 APEELTSHKCINLRLPTHGGLYPW---EFSSQGREFRVRVGGPLI----MNSVYQILDGC 241 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291 + G G A LP+ +V +N L+ I+ P + YP ++T AFR + Sbjct: 242 LEGIGAAQLPNGLVDRYLENGELIEILAAWSEPFQGYHLYYPSRRQHT---AAFRVVLDA 298 Query: 292 LKAR 295 L+AR Sbjct: 299 LRAR 302 >gi|134279453|ref|ZP_01766165.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167844550|ref|ZP_02470058.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167917806|ref|ZP_02504897.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|134248653|gb|EBA48735.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] Length = 294 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 141/287 (49%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ LG +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LGAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + PR + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFALRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + L +++ I T + +P + KL+AF +FI Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288 >gi|319794019|ref|YP_004155659.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596482|gb|ADU37548.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 304 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 143/286 (50%), Gaps = 12/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G+FT AA+ L L + ++++QI LE+ + +KL R R +T+T G+ Sbjct: 7 MRIFVRVVEAGTFTRAADSLALPKGTVTKQIQALESRLRVKLLNRTTRRVTVTPDGAAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + + + P+G+LRI + + ++ NL F YPDIQ+ L Sbjct: 67 ERAARLLNDFDDMEASMTNAQASPTGRLRIDVGTSVARQIILPNLASFCDRYPDIQVDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ T+H A+P Y+K P +++ Sbjct: 127 VSDRTVDLISDNVDCVIRAGE-LSDQSLVARRIGTLHFVTVASPAYIKRYGTPAHPNDIE 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGS-GIAL 243 K H ++++ + + + +R G R+S + N++++ VLG GI+ Sbjct: 186 KRHTVVSYFSGTTRRIYPHEFHKGDERIELNGPYRVSVNESNAHMA----AVLGGFGISQ 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ ++ LV ++ D ++ YP + K++AF Sbjct: 242 CITFMADPHLESGELVEVLADWSRDPLPIHVVYPPNRHLSAKVRAF 287 >gi|117918975|ref|YP_868167.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117611307|gb|ABK46761.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 317 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 9/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L L+++++SR+I+ LE++ G +L +R R L LTE Sbjct: 1 MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + +++ L++ + +L G L+I I+LGQ L +FL LYPDI Sbjct: 61 GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ L N+ +D+ + D ++ + L LV + A+P YL P Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179 Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q+L KH I I + F+ + V + EP ++ L VN+ + + G GI Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGQSWV---VIEP-VTQLTVNNVTIAREAAIAGLGI 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P I + + LV +++D V YP+ K + F FI+ Sbjct: 236 TAVPSIIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIY 288 >gi|330502898|ref|YP_004379767.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917184|gb|AEB58015.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 306 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 141/295 (47%), Gaps = 24/295 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +F V SFT AA + + +S++SR+I+ LE +G++L R R L LTE G Sbjct: 4 DDALIFTRVVECHSFTQAATSMGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63 Query: 66 LHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + ++ + + E ++LQ +PSG LRI + I+ GQ L L EF+ YP I Sbjct: 64 YYERCRQIMLDFAEAEQAVMQLQR---EPSGLLRITSPIEFGQLFLGRVLGEFMRQYPQI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L ++ +D + D AI++ +P Q S+LI RKL A+P YL P S Sbjct: 121 DAEVELTSRSVDPLEEGVDIAIQVGQP-QDSTLIARKLFESGRRLCASPAYLAAHGTPRS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239 + EL+ H I P+ W P+ + C +V N+ + + G+ Sbjct: 180 VAELEGHRAILLQHDAPR-----YW------PLLGEHLPCQRVMTCNNITFAREATLAGA 228 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI+ LP I ++ + LV ++ + P VY YP K+K F +F+ Sbjct: 229 GISGLPVMISEEAVRSGRLVELLPEARLPVGEVYAIYPSRRFQAMKVKTFLDFLI 283 >gi|307727526|ref|YP_003910739.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307588051|gb|ADN61448.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 304 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 141/281 (50%), Gaps = 13/281 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A +G FT AAE+L+L+ S++S+ ++ LE +G+ LF R R L+LT+ G + Sbjct: 15 FVCAADAGGFTAAAERLNLTSSAVSKSVARLERRLGVVLFERTTRSLSLTDAGRAFYETC 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + +L + L +P G +R+A G+ + L F YPD++ QL+ + Sbjct: 75 TRILAELAEAEAILAAQKREPVGTVRVALPASFGRLCVVPVLVRFSAQYPDVRPQLLFTD 134 Query: 131 KDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ D D A+R+ P + +SL QR L + AAP YL+ P +I +L++H Sbjct: 135 RFVDLVEDGVDLAVRIGGPSVLPASLGQRFLGRERLIFCAAPAYLEKNGMPQTIDDLEEH 194 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245 + +G P + A D +G+ PRI + L+ ++ G GIA L Sbjct: 195 ACVVYGR--PDGEQSPWSYAVADGQVGQCIVRPRIVAGDAEAQLAFVRA---GLGIAQLA 249 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 ++V+D+ LV I+++ T + +P A + T K+ Sbjct: 250 TWLVRDDLKAGRLVTILDEAATDGLPLSLLWPVARQLTPKV 290 >gi|254718279|ref|ZP_05180090.1| transcriptional regulatory protein [Brucella sp. 83/13] gi|265983240|ref|ZP_06095975.1| transcriptional regulator [Brucella sp. 83/13] gi|306838890|ref|ZP_07471718.1| LysR family transcriptional regulator [Brucella sp. NF 2653] gi|264661832|gb|EEZ32093.1| transcriptional regulator [Brucella sp. 83/13] gi|306406006|gb|EFM62257.1| LysR family transcriptional regulator [Brucella sp. NF 2653] Length = 297 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVTETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +P+G +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPGFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY+ + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYVARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|221199296|ref|ZP_03572340.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221205802|ref|ZP_03578817.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221174640|gb|EEE07072.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221180581|gb|EEE12984.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 300 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 29/307 (9%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + V V +GSF A E + L+Q ++SR ++ LE +GI++F R AR + Sbjct: 1 MRFDSRLLSGIGVLSAVIEAGSFARAGEAIGLTQPAVSRAVARLEERIGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ + K G+LR+ G +L L FL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKEKVRGRLRVNVDGTFGHYVLAPKLAAFLE 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +++ + ++ D+ D D A+R P + SS R L+ + A+P Y+ Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVN 226 EP ++L D H + D P F W A R L VN Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPFEWEFHRGGEVVPFAAAGR---------LMVN 228 Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 S++ C+ G+G+A L + +D L ++ D +F +Y Y + + K+ Sbjct: 229 DTGSLLGACLGGAGVAQLLELYARDIVSEGRLTLLLPDWTDETFPLYAYYHASNLVSAKV 288 Query: 284 KAFRNFI 290 + F +F+ Sbjct: 289 RVFLDFV 295 >gi|91795113|ref|YP_564764.1| LysR, substrate-binding [Shewanella denitrificans OS217] gi|91717115|gb|ABE57041.1| transcriptional regulator, LysR family [Shewanella denitrificans OS217] Length = 290 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 13/276 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 W+ + F VA + SFT A ++L +S + +SRQ+S LE + KLFYR R + LTE+ Sbjct: 2 MQWEGISEFVAVAETESFTAAGKRLSISTAQVSRQVSQLEDRLSTKLFYRTTRKVALTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ +R +V + L+ + + KP G +++ + G+ + + F+ YP + Sbjct: 62 GAVYYRHCRQVLNGLDDAERAISSLKDKPQGLIKMTAPVTYGETHIMPIVIAFMAQYPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++Q L N+ +D+ D AIRL + + SS++ ++L + + AAP Y+ P S Sbjct: 122 EVQCELTNQRLDLIDGGFDLAIRLGQ-LGDSSMMAKRLSSRRQYVCAAPSYIATYGAPYS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + EL +HN + W + ++ L +S S++ + G GI Sbjct: 181 LSELSQHNCLIG--------SQSQWQFIEQGKVKNIKVQGSLHCSSGFSLLDAAIRGLGI 232 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LPDY V L+ ++E ++ YP Sbjct: 233 VQLPDYYVSQALTEGKLMVLLEPFQQSKEGIWALYP 268 >gi|217970299|ref|YP_002355533.1| LysR family transcriptional regulator [Thauera sp. MZ1T] gi|217507626|gb|ACK54637.1| transcriptional regulator, LysR family [Thauera sp. MZ1T] Length = 299 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 27/297 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++ F V +GSF AAE L LS+++ SR + LET +G++L +R R L+LTE G + Sbjct: 6 EMQTFCAVVDAGSFVGAAEALGLSKATASRYVGELETRLGVRLLHRTTRRLSLTEDGERF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + EV LE + EL S G LRI + G L F L+P +++++ Sbjct: 66 YARSREVLAGLEEAEAELHSRSGAARGLLRINAPVTFGIRHLAPLWGAFRDLHPQVRLEV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D AIR+ + SS+L+ R+L + AAP YL P +L Sbjct: 126 TLADRTVDLVEEGFDIAIRI-AALPSSTLVCRQLARTRIVLCAAPAYLAAHGAPRLPADL 184 Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCV 236 H +I + GD W D P G R+S + NS + + Sbjct: 185 ASHTVIAYSYWSGGD---------EW--QFDGPDG--RVSVRTRPAVHTNSGDTCRAMAL 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ L P ++V ++ LV +M + + +Y YP K++A +F+ Sbjct: 232 AGQGVILQPGFLVAEDLAAGALVELMPAYRSVTLGIYALYPTRKFVPPKVRALVDFL 288 >gi|120553994|ref|YP_958345.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120323843|gb|ABM18158.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8] Length = 298 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 141/287 (49%), Gaps = 24/287 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA GSFT AA+ L ++ +++S+ I+ LE ++ +L R R ++LT+ G Sbjct: 9 MNIFRRVAELGSFTRAADDLDITAATVSKHIAFLERDLDTRLINRTTRRMSLTDAGLAFL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + T + +LE ++E + +P G +R+ + G + G + FL YP+I+I L Sbjct: 69 KRTQALLDELEDAELEARGFQAEPRGLIRLNVPMSFGLTHITGAIDSFLARYPEIEIDLQ 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D AIR+R + SSL+ + L AAP YL++ + +L Sbjct: 129 LSDRMVDLVEQGVDMAIRIRSTLADSSLLAKPLRQSRNIVCAAPGYLEHSPAIHTPADLA 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRI---SCLQVNSYLSIMQYCVLGSG 240 N + F DRP +G+ + + +S L+I Q + G+G Sbjct: 189 AQNCLMFN--------------LHDRPRVWALGDKEVVVSGNYRTDSSLAIRQSLLNGAG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + L+P ++V+ N LV ++ + ++TV+ +P K K++ Sbjct: 235 VGLVPRFLVQQDLANGALVALLSEYPPQTYTVFALFPPGRKQPTKVR 281 >gi|91782875|ref|YP_558081.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686829|gb|ABE30029.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 298 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 20/306 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L VF V SGS T AAE+L + S +SR ++ LE ++ L R R L LT Sbjct: 1 MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALARLEKKLDTALVRRTTRRLQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + H +E + + +PSG+LR+ + + ++ F LYP Sbjct: 61 EEGETFLQHARAILHAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L + + +D+ D AIR+ + +Q S+L R L T + A+P YL EP Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIG------EPRISCLQVNSYLSIMQ 233 S++ L +H LI F E N W R G EP I+ +S ++ Q Sbjct: 180 RSVEALREHRLIGF-----TAPEHLNRWPLREGRKGGAEALKIEPAITA---SSGETLRQ 231 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289 + G GIA L D++ + LV I+ +V+ V Y ++ G+++ F +F Sbjct: 232 LALSGWGIACLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDF 291 Query: 290 IFLKAR 295 I + + Sbjct: 292 IAARVK 297 >gi|322831688|ref|YP_004211715.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321166889|gb|ADW72588.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 297 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 8/290 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F V SGSF+ AAE + L +S+++RQ+ LE+E+G+KL +R +R L++TEQG Sbjct: 5 ENMRTFVQVVDSGSFSRAAELMDLPKSTVTRQVQALESELGVKLLHRTSRRLSMTEQGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E +Q ++ P GK+R+ + + L FL+ YPD+Q++ Sbjct: 65 YYHGAIRLLDQMEILDSNVQAATQAPRGKIRVEMPNAIAYRRVIPALPGFLMHYPDVQVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + N+ D+ DC IR+ + + + +LI R L + M AAP YL+ P Q+ Sbjct: 125 VSVGNRTADLIAQNIDCVIRIGE-LHNDALIARSLGVLPMITCAAPAYLQKHGMPEHPQD 183 Query: 186 LD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L H L+ P+ F D+ R VN + + + G G+ Sbjct: 184 LILDHTLVQIAS--PQTGRVFEHQVFKDQQCVTVRGRWQFSVNDSTAALTGAIAGLGVLT 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + DN LV + + V+ +PE K++ F ++ Sbjct: 242 TYRFLAQEALDNGALVPLFPEWADEQVPVHIAWPENRHLPSKVRYFIEWV 291 >gi|260770382|ref|ZP_05879315.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|260615720|gb|EEX40906.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] Length = 306 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 21/300 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F V GSF+ AAE+L +++S++S++++ LE E+GI+L R R L+LT Sbjct: 2 MDNTFAAIPIFVAVVECGSFSSAAEKLSITKSAVSKRVTQLEDELGIRLLNRTTRKLSLT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + S+ + + E +P GKL+I + G + + EFL YP Sbjct: 62 EAGERYYYHVSQALSFAQQGSDAVTELQGEPQGKLKITAPMSFGVLHVATLIAEFLTRYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I L L+++ +D+ D AIR+ + S+L+ ++LV +P YL P Sbjct: 122 KVEIDLQLEDQMVDLVQGGFDLAIRIGH-LPVSNLVAKRLVRCRSVLCCSPDYLSRHPAP 180 Query: 181 LSIQELDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 +L +HN + + + DF + T + L +N+ +I + Sbjct: 181 QKPADLLQHNCLVYSYFRGGSEWTFTQNGSDFKVIPTGN----------LSINNSEAIRR 230 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI LP ++V + L IM D P +Y +PE K++AF FI Sbjct: 231 ALLDGLGIGQLPTFLVSKDIRAGKLHAIMTDYPLPEHAIYAVFPERKHLPHKVRAFMEFI 290 >gi|49084442|gb|AAT51201.1| PA1328 [synthetic construct] Length = 303 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +GSFT AA L ++ +++S+ I+ LE E+ +KLF+R RG++L+E G + H Sbjct: 10 LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 T + Y L + L ES +PSG+LRI + + L +NL + L EF+ YP +Q+++ Sbjct: 70 EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +DI + D IRL +Q + + + A P YL P S+ +L Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGI--AL 243 D H + F P+ W D E + V++ +I++ G+GI A Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTGAIIEAARAGAGIAQAF 246 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + + D LV ++ P ++ Y KL+AF + R+W+ Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299 >gi|24372117|ref|NP_716159.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24346007|gb|AAN53604.1|AE015500_3 transcriptional regulator, LysR family [Shewanella oneidensis MR-1] Length = 310 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 139/296 (46%), Gaps = 15/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L L+++++SR+I+ LE + G +L +R R L LTE Sbjct: 1 MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELEADTGTQLLFRTTRALKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + +++ L++ + +L G L+I I+LGQ L +FL LYPDI Sbjct: 61 GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAKFLTLYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L N+ +D+ + D ++ S L LV + A+P YL P Sbjct: 121 TIDAELTNRKVDVIEEGIDLLFQIADS-HDSRLQSYSLVNAYKSLMASPKYLAEHGTPKV 179 Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L KH I + K + +W+ + EP ++ L VN+ + + G Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGKSWV------VIEP-VTQLTVNNVTIAREAAIAG 232 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI +P I ++ LV +++D V YP+ K + F FI+ Sbjct: 233 LGITAVPSIIAQEAVEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIY 288 >gi|330967181|gb|EGH67441.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 297 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 6/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F V+ R GSFT AA QL +SQS++S + LE +G++L R R ++ TE G + Sbjct: 7 NDLQAFVVITREGSFTRAAAQLGVSQSALSHTMRALEARLGVRLLTRTTRSVSPTEAGQR 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ + + ++E + E P+G +RI + N+L L + L YPDI+++ Sbjct: 67 LYQSMAPRFDEIELELAAVSEFRNTPAGNVRIQASEHAANNILWPKLLKVLPDYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D DI D +RL + + ++ + +P Y K + P ++ Sbjct: 127 ITVDYALSDIVAQRYDAGVRLGDQVAKDMIAVPIGPSLRIAVVGSPEYFKQRQIPREPRD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN I +P W D + R+ NS + I++ V G G+ L Sbjct: 187 LAAHNCINL--RLPTHGSLMQWDFEKDGHELKARVEGQWTFNSSVPILRAAVAGCGLGFL 244 Query: 245 P-DYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274 P D + K+ + +L+R++ED P + YP Sbjct: 245 PEDMVAKELADGSLLRVLEDWCQPFAGYHIYYP 277 >gi|239816232|ref|YP_002945142.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239802809|gb|ACS19876.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 298 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +ARSG+ AA +L + ++++R+I LE EVG LF R + G LTE Sbjct: 1 MDWDNLRYFLELARSGTLMSAARRLEVDHTTVARRIQALEKEVGAPLFSRESGGHRLTEA 60 Query: 63 GSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G KL + +E+T QE SG +RI T G +L L F + Sbjct: 61 GRKLQPQVEAMESAFQAVESTAPASQEGL---SGLIRIGATEGFGTVVLAPQLALFAQQH 117 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I L+ + + +S AD I L +P + ++ KL + YA+ YL + Sbjct: 118 PRLTIDLLAMPRLVHLSRREADIVISLERPARGPVVVS-KLTDYTLRLYASKKYLAAHKP 176 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ++L H I++ D + ++ +L + RP L+ S L+ + + G+ Sbjct: 177 IKTREDLRGHTFISYVDDL-LFSKELQYLDELHRPDA----FALRSTSVLAQHRAVLAGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LP +I +++ L ++ + T + P K+ +++A F+ Sbjct: 232 GIAVLPAFIAENDGALKPVLPGQANFTRTFWMSMPAETKHLVRMQAVWEFL 282 >gi|308185578|ref|YP_003929709.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1] gi|308056088|gb|ADO08260.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1] Length = 298 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 137/297 (46%), Gaps = 19/297 (6%) Query: 1 MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+F W + +F +VA GSFT AAE+ L +SS+S++IS LE +GI+L R R L L Sbjct: 1 MAFRQWQDMALFALVAECGSFTGAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G + E+ E + PSG+LRI + +G LL EFL LY Sbjct: 61 TFAGERYLLHCQEMMQASERADQAIASLRENPSGRLRITSPAGIGATLLARCNAEFLRLY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PD+ + + + ++ D+ + D A+R +P Q SSLI R++ A+ HYL Sbjct: 121 PDVTLDVSISDEMRDLVQEGFDVALRTGQP-QESSLIGRRIGNCPRLLVASQHYLNQHPP 179 Query: 180 PLSIQELDKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 L Q+L H I ++ + E + WL P G ++ L + Sbjct: 180 LLHPQQLSAHRCIAHRAWNEWVLQRDDEFYRWLL----PPGH------LTDNLLYARESA 229 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + +GI LLP ++ +P LV ++ D ++ YP N+ L F F Sbjct: 230 LGDAGITLLPHFLTDGAMADPRLVPVLPDWEVEGNELWLVYPGRKLNSPALARFIEF 286 >gi|261339009|ref|ZP_05966867.1| hypothetical protein ENTCAN_05214 [Enterobacter cancerogenus ATCC 35316] gi|288318840|gb|EFC57778.1| LysR-family transcriptional activator [Enterobacter cancerogenus ATCC 35316] Length = 299 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 20/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L +SS+S++IS LE +VGI+L R R L+LT G Sbjct: 8 MALFALVAEMGSFTAAARKADLPKSSVSQRISQLEQQVGIRLLNRTTRRLSLTFAGEHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI +G LL EF L YPD+ + + Sbjct: 68 VHCREMLAASERAEYAIQRLRDNPSGRLRITCPAGIGATLLAHMNAEFQLRYPDVSLDVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186 + + +D+ D A+R KP Q SSLI R + + A+P YL REPL+ +L Sbjct: 128 ISDDVLDLVESGYDVALRTGKP-QDSSLIGRMIGHCPRYMLASPGYLAR-REPLTHPSQL 185 Query: 187 DKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H IT ++ + ED+ +L + ++ + + V G+GI Sbjct: 186 VGHRCITHRAWSEWVLQRASEDYRYLPD----------NAHMTDNLVYARECAVAGAGIT 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +LP ++++D LV+++ + ++ YP N+ L ++ +F Sbjct: 236 MLPAFLLEDKIETGALVKVLPEWNVEGNDLWLAYPSRKLNSPALMSYIDF 285 >gi|170692906|ref|ZP_02884067.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170141904|gb|EDT10071.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 334 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 143/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP GKLRI +G+ L+ L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPQLCEFHKRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ + A+P Y++ P S+++L+ Sbjct: 127 LSDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVSCASPEYIERAGMPTSLEDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + + +W VD E ++ S + VN + + + G G+ Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFLVDGKEVEVKMKSIVSVNDADAYVTCGLEGFGLIQPAL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + LV ++ ++ + YP + + K++ F ++I Sbjct: 244 FMVLPHLRAGQLVEVLPEMKPLPMPISAVYPHSRHLSPKVRVFVDWI 290 >gi|254254847|ref|ZP_04948164.1| regulatory protein LysR [Burkholderia dolosa AUO158] gi|124899492|gb|EAY71335.1| regulatory protein LysR [Burkholderia dolosa AUO158] Length = 352 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VV R SF+ AAEQL +S + +S++I+ LE ++G +L +R R +T+TE G + Sbjct: 51 DDLRVFSVVVRLASFSAAAEQLGVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAGER 110 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ ++ ++ + P G LRI+++ G++++ L +F YP + ++ Sbjct: 111 VYARAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVVAPALLDFTARYPQLNVR 170 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ + + LI R+L + A+P YL P S+ + Sbjct: 171 LDLFDRLVDVAGEGYDLDVRIGDEV-ADHLIARRLAANYRVLCASPDYLARRGTPRSLAD 229 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233 L H+ + + D P G R+ + ++V LS +Q Sbjct: 230 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 275 Query: 234 YCVLGSGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GI L I + P L R++ D I P+ ++ YPE + + K++ + Sbjct: 276 WALAGRGIVLRS--IWEAGPLIERRALCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVD 332 Query: 289 FI 290 F+ Sbjct: 333 FL 334 >gi|83749210|ref|ZP_00946211.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207743886|ref|YP_002260278.1| predicted xylanase/chitin deacetylase protein [Ralstonia solanacearum IPO1609] gi|83724104|gb|EAP71281.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206595286|emb|CAQ62213.1| predicted xylanase/chitin deacetylase protein [Ralstonia solanacearum IPO1609] Length = 299 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 134/290 (46%), Gaps = 10/290 (3%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L + R+ GS + AA +L LS RQ+ LE +G+KL R R +LT+ Sbjct: 2 DRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGALGVKLLNRTTRRQSLTDG 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++E Q ++ ES P G+LRI+ I G L L EF+ +PDI Sbjct: 62 GRLFYERAKNILAEMEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L L N+ +D+ + D A R + S L+ R+L + A+P YLK +P + Sbjct: 122 TVELSLTNRTVDLVEEAFDAAFRT-GDLPDSGLMARRLAPHRLTLCASPAYLKMRGQPRT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L KH + F + F+ D + P +S ++ V G GI Sbjct: 181 PEDLRKHECLVFAHTSLRTQWSFDG---PDGSVKVPIKGRFLADSGEALRAAAVAGVGII 237 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L P ++ ++ L RI++ ++ Y + T KL++F +F Sbjct: 238 LQPAELLAEDIQTGLLTRILKRYEPTPRPLHVLYAPDRRMTQKLRSFLDF 287 >gi|325920481|ref|ZP_08182408.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549061|gb|EGD19988.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 308 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 141/297 (47%), Gaps = 17/297 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S+++ + LE + + L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAETLHMSRASVTQVVQQLEARLRVTLLNRTTRRVHVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++S P G+LR+ L + +L L F YPDIQ+ Sbjct: 64 AYYERVLRLLADMDDAETSLSDASALPRGRLRVDVPSPLARLILMPALPTFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R I SLI R++ + YAAP YL+ P Q Sbjct: 124 DMGVSDRRVDLIGENVDCVVR-GGIITDQSLIARRVGDLQAGVYAAPSYLQRLGTPAHPQ 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ +H + F +P M+ N + G ++ N+YL+ + Sbjct: 183 ELENTQHRCVGFMRWSNNKTVPYVMQRGNEAVNLQ---GRYVVASDDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ LP Y+ K + LV++ +D + +P + KL+ F +++ Sbjct: 237 GMGVLWLPVYMAKAHLASGELVQLFDDWSLEPMPLSIAFPPNRHVSAKLRVFIDWVI 293 >gi|222082270|ref|YP_002541635.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726949|gb|ACM30038.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 300 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 130/259 (50%), Gaps = 8/259 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF G FT AA ++ S++S+ IS LE +G +L R R L LT +G Sbjct: 11 EMEVFVRAVELGGFTAAATACRMTPSAVSKLISRLEARLGARLINRSTRRLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + + + + +G +RI T+ G ++L + F+ LYP + +++ Sbjct: 71 YERSIAILADIAEAE-RYASAGEEAAGPIRINTSGSFGNHVLAPLIPSFMALYPAVSLEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +K +D+ + AD AIR P+++SSL RKL T A+P YL+ P SI EL Sbjct: 130 VHTDKVVDLMEERADVAIRT-GPLKNSSLTARKLGTTRKIIVASPDYLRRRGTPRSIDEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 KH I F + +E + L + + + P LQV+ ++ + G+G+A LP Sbjct: 189 QKHGRIGFA--YARAVEGWPLL-SAGKTMEVPVTPGLQVSDGEAMRHLALAGAGLARLPA 245 Query: 247 YIVK---DNPNLVRIMEDV 262 + VK + L ++ED+ Sbjct: 246 FTVKADIEAGRLAPVLEDI 264 >gi|50122764|ref|YP_051931.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49613290|emb|CAG76741.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 301 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF AAE LH+ S+++R I LE+ +G +L R R L++T+ G + + Sbjct: 7 METFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITDVGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + G +RI T L +N L L +F +P I++ Sbjct: 67 DSCKAILRDVHAAESVTAQQKEELQGTIRIGATPSLVKNFLIPALPDFCERHPGIRLDFH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI DC IR +P S L+ R+L T H A+P YL+ P ++ L Sbjct: 127 LGDATVDIVQQGIDCVIRTGEP-PLSRLVARRLGTFQWHICASPRYLEQHGHPTTVDSLK 185 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W + PR + VN + + V G G+ + Sbjct: 186 EHTAVGYTH--SRTGRSTSWGFHDEAHTVAIPRAGQISVNDTDAYVAAGVAGLGLLRIAS 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y+V+ + +LVR++ D+ +P ++ YP++ + ++AF Sbjct: 244 YMVRQQLSDGHLVRLLPDIGSPFEPIFILYPQSRHLSPAIRAF 286 >gi|15596525|ref|NP_250019.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|254239699|ref|ZP_04933021.1| hypothetical protein PA2G_00322 [Pseudomonas aeruginosa 2192] gi|9947267|gb|AAG04717.1|AE004562_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126193077|gb|EAZ57140.1| hypothetical protein PA2G_00322 [Pseudomonas aeruginosa 2192] Length = 302 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +GSFT AA L ++ +++S+ I+ LE E+ +KLF+R RG++L+E G + H Sbjct: 10 LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 T + Y L + L ES +PSG+LRI + + L +NL + L EF+ YP +Q+++ Sbjct: 70 EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +DI + D IRL +Q + + + A P YL P S+ +L Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243 D H + F P+ W D E + V++ +I++ G+GI A Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAF 246 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + + D LV ++ P ++ Y KL+AF + R+W+ Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299 >gi|113867880|ref|YP_726369.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113526656|emb|CAJ93001.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 302 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 144/300 (48%), Gaps = 9/300 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD L+ F V +SGS AA LH++ S++ R+++ LE +G LF RHA G +T G Sbjct: 5 DWDDLKYFLAVGQSGSLAGAARALHVNHSTVLRRLARLEETLGTLLFERHATGYAMTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + V +++ Q +L + SG LR+ TT L LL EF ++P IQ Sbjct: 65 EALAHRLAGVGEQIDAAQRQLSGLDSQLSGPLRVTTTDTLLGGLLMPLFAEFRSMHPRIQ 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q++++N + +S AD AIR P + L+ R++ + YAA YL+ P Sbjct: 125 LQIVVNNSFLSLSRREADVAIR---PANAPPEYLVGRRIGRLQTAPYAARRYLQQLGLPT 181 Query: 182 SIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + + ++P + + + + EPR + +S +++ G G Sbjct: 182 EADHPRLADWSAYDWVVPDEALSHLAQARWIRDHVPEPR-RAVSADSLVAMADAVRHGMG 240 Query: 241 IALLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 +L + +P LVR+ DV + +P+ L+++ +++ +F++ + R ++ Sbjct: 241 AGMLLCLLAGADPELVRLAPVDVAMDTDLWVLTHPD-LRHSARVRVLGDFLYERLRQGEW 299 >gi|78064788|ref|YP_367557.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77965533|gb|ABB06913.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 294 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLTE+G + Sbjct: 9 AFVRTAEALSFVAAGRTLGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + S+ +P G+LR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDFRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR P+ SSL+ R+L A P YL P + ++L+ H Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTPRDLEAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + P + +W D + L N+ ++ + G GI +PD++ Sbjct: 187 ECVRY--CFPTTGKLQDWALAADDGTPLKLRTALTCNNMEALRGTVLAGLGIGYMPDFLA 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D + LV +++D +P + + + KL+ F +F+ Sbjct: 245 RDALEHGELVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|319793059|ref|YP_004154699.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595522|gb|ADU36588.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 302 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 12/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +ARSG+ AA +L + ++++R+I LE EVG LF R A G LTE Sbjct: 1 MDWDNLRYFLELARSGTLMSAARRLEVDHTTVARRIQSLEKEVGAPLFSREAGGHRLTEA 60 Query: 63 GSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G +L + +E+T QE SG +RI T G +L L F + Sbjct: 61 GRRLQPQVEAMESAFQAVESTAPASQEGL---SGLVRIGATEGFGTVVLAPQLALFAAQH 117 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I L+ + + +S AD I L +P + ++ KL + YA+ YL + Sbjct: 118 PKLTIDLLAMPRLVHLSRREADIVISLERPARGPVVVT-KLTDYTLRLYASKQYLAAHKP 176 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ++L H I++ D + E +L + RP L+ S L+ V G+ Sbjct: 177 IKTREDLRGHTFISYVDDLLFSKE-LQYLDELHRPDA----FALRSTSVLAQHSAVVAGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LP ++ + L ++ + T + P K+ +++ F+ Sbjct: 232 GIAVLPAFVADGDKGLRTVLPAQANFTRTFWMSMPAETKHLARMQTVWEFL 282 >gi|75675173|ref|YP_317594.1| LysR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74420043|gb|ABA04242.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi Nb-255] Length = 304 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 9/251 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F V SF AA L LS++++S+ +S LE +G +LF R +R L LT+ G Sbjct: 6 DFEALAIFAKVVELRSFAGAAADLGLSKATVSKAVSRLEDRLGARLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + E + E S P G +R+A + G N++ L FL +YP++ Sbjct: 66 KNLSERAARLLADGEAAENEALARSTVPRGLVRLAVPMTFGVNVIAPLLPGFLAMYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L + +D+ + D +R+ + SSL+ R+L + H A+P YLK P Sbjct: 126 VDLHFSDAMVDLIGEGFDVGVRIAS-LPDSSLLARRLCPMPRHTVASPAYLKAHGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H+ + + L P N RP G L+VN+ +++ + G G Sbjct: 185 MHLAQHSCLGYAYLSTPGVWRYVNARGEQAAVRPSGR-----LRVNNGEALLPAIIAGLG 239 Query: 241 IALLPDYIVKD 251 IA LP++I+ D Sbjct: 240 IADLPEFIIGD 250 >gi|91782384|ref|YP_557590.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686338|gb|ABE29538.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 305 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 145/296 (48%), Gaps = 7/296 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SFT +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L P+G +R+ T+ L + LL L +F YP+I + Sbjct: 64 LFYERCVRILAEVAEAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ P + SSL+ R++ + A+P YL+ EP +++ Sbjct: 124 RLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPTTLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L +H + + + + F + VD + + + S L VN + VLG GI Sbjct: 183 ALSEHRAVNY--VSARTGRTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ 240 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 ++V D N L I+ +P + Y + +L+AF ++ AR+ Sbjct: 241 PSRFMVSDLINQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296 >gi|167814425|ref|ZP_02446105.1| LysR family transcriptional regulator [Burkholderia pseudomallei 91] Length = 322 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290 >gi|330808800|ref|YP_004353262.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376908|gb|AEA68258.1| putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 302 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 146/299 (48%), Gaps = 7/299 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LRVF VA+ GSFT AAEQL +++S S + LE +VG +L R+ R + LT Sbjct: 1 MELNDLRVFCRVAQLGSFTKAAEQLGVAKSRASAIVRTLEADVGSRLLQRNTRSVRLTPD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G E+ + + Q + ++ G++R+ GQ L+ +L+E L +P + Sbjct: 61 GELFFERCRELLRESDHLQGMFRPAAGALQGRVRLDMPSLFGQELVMPHLQELLSAHPLL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ ++++ +D+ + DC IR+ P+ S L+ RKL T+ A+P YL+ P S Sbjct: 121 DLRISINDRRVDMIQEGVDCLIRI-GPLPDSDLVARKLGTMKACNLASPAYLRQYGVPSS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241 + +L H +I + + + E+ W VD + P +S L +NS ++ C G GI Sbjct: 180 LTDLAGHRVIHYANNLRS--EEAAWRYAVDGEVQSVPMVSALAINSGSLLLAACRNGLGI 237 Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 ++ + D+ LV ++ + P P +++A N++ R + Sbjct: 238 MQVSVPASQRLIDSGELVEVLPEFRPPPIQASLLLPHRRHVAPRVEAVLNWLTQVTRPY 296 >gi|323525836|ref|YP_004227989.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382838|gb|ADX54929.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 333 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA L LS + ++R ++ LE +G +L R R L+LTE G+ Sbjct: 6 SMRVFVRVADLGSFVRAANALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTEAGATY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE + L +P G LRI + G L ++ + YP++ + Sbjct: 66 LERVRHILDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPEVVPDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ D+ + D I + +P +S+S++ R+L T + A P YL P +L Sbjct: 126 TLADRQADLVEEGFDVGIMVGRPARSASIVTRRLTTCQLTVCATPDYLAQHGTPARPGDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 H ++ + E P G R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 LAHPCLS------RPPEQGGEERLFSGPEGLVRVRTANAIAANNSEMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LV ++ D P + YP L K++ F Sbjct: 240 LPSYLIGRDLAAGRLVELLRDYRLPEIEITIAYPSRLHLPAKVRTF 285 >gi|254713362|ref|ZP_05175173.1| transcriptional regulatory protein [Brucella ceti M644/93/1] gi|254716283|ref|ZP_05178094.1| transcriptional regulatory protein [Brucella ceti M13/05/1] gi|261218062|ref|ZP_05932343.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261321090|ref|ZP_05960287.1| transcriptional regulator [Brucella ceti M644/93/1] gi|260923151|gb|EEX89719.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293780|gb|EEX97276.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 297 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I + A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPVATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFAGYHLYYPNRRQHPPALAAL 289 >gi|295098522|emb|CBK87612.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 299 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 20/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA++ L +SS+S++IS LE +VGI+L R R ++LT G Sbjct: 8 MALFALVAEMGSFTAAAQKAELPKSSVSQRISQLEQQVGIRLLNRTTRRISLTFAGEHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI +G LL EF L YPD+ + + Sbjct: 68 VHCREMLAASERAEYAIQRLRENPSGRLRITCPAGIGATLLAHMNAEFQLRYPDVSLDVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186 + + +D+ D A+R KP Q SSLI R + + A+PHYL R PL ++L Sbjct: 128 ISDDVVDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPHYLAR-RAPLIHPRQL 185 Query: 187 DKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H IT L+ ED+ +L + ++ + + + G+GI Sbjct: 186 VEHRCITHRAWSEWLLRSESEDYRYLPD----------NAHMTDNLVYARECAIAGAGIT 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP ++++D LV+++ ++ YP N+ L ++ +F Sbjct: 236 LLPAFLLEDKIEKGALVKVLPAWSVEGNDLWLAYPSRKLNSPALMSYIDF 285 >gi|254473821|ref|ZP_05087216.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211957207|gb|EEA92412.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 306 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 141/289 (48%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF +V F AA +L +S+S++S++I+ LE +G +L R R ++LTE G + Sbjct: 7 LPVFVMVVEHQGFAAAARELGVSKSAVSKRITLLEEHLGARLLNRSTRNISLTEAGELYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + KP G+L+I + G+ + + +FL L P+I I +I Sbjct: 67 ARAVDALEAAKEAESAVAQMQGKPKGRLKINVPMTFGRLHIAPLIPKFLKLNPEISIDMI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D++ ID+ D AIR + ++ SSLI RK+ A+P YL+ P + Q+L Sbjct: 127 MDDRTIDLVDGGFDLAIRGGR-LKDSSLIARKITPCFNVLAASPQYLEEHGTPATPQDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 HN + + + W T++ P G+ R+ QVN+ ++ + G GI L Sbjct: 186 NHNCLHYAYF----SDQHEW--TLEDPQGQVRVETSGNYQVNNGDALTTAVLGGCGIGRL 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + L +++ + P+ T+Y YP K + F NFI Sbjct: 240 TTFAAGEYLRSGALTQVLPNYTLPTQTMYAVYPNRKYLPTKTRVFINFI 288 >gi|167737295|ref|ZP_02410069.1| LysR family transcriptional regulator [Burkholderia pseudomallei 14] gi|167909709|ref|ZP_02496800.1| LysR family transcriptional regulator [Burkholderia pseudomallei 112] Length = 320 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290 >gi|91783793|ref|YP_558999.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687747|gb|ABE30947.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 309 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 138/305 (45%), Gaps = 24/305 (7%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + + V + SGSF A L +SQS +SR ++ LE +GI+LF R R + Sbjct: 1 MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT++G + + + LE + + G+LR+ + +L L F+ Sbjct: 61 VLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+Q++LI ++ D+ D D AIR P S+LI RKL+ + AAP YLK Sbjct: 121 RHPDLQLELITRDQLGDMVADGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179 Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229 P + EL+ KH I F D P F+W R P G L VN Sbjct: 180 GHPANPAELESGKHVCIKFRD--PLTGYPFSWEFHRGRKKIVVTPQGR-----LTVNDVG 232 Query: 230 SIMQYCVLGSGIA----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 ++ CV G G+A L + +V LV + D + +Y YP K++A Sbjct: 233 TLHSACVAGQGVAQILELGAESLVASG-KLVALFPDWCDEVYPLYALYPSRHHPPAKVRA 291 Query: 286 FRNFI 290 F FI Sbjct: 292 FFEFI 296 >gi|152989498|ref|YP_001346893.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964656|gb|ABR86681.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 302 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA +G FT AAE++ +S S ISRQ++ LE + +L YR R ++L+E G Sbjct: 4 WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + S +P G LR+ + G+ + + F+ YP +++ Sbjct: 64 TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + + S L+ +L M+ A P YL+ P S Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL + N + + +ED T R G R NS +++ + G G+ L Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V D + LV +++ P+ V+ YP+ + K++ +++ Sbjct: 236 PDYYVIDHLRSGRLVSLLQGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284 >gi|218891710|ref|YP_002440577.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235326|ref|ZP_04928649.1| hypothetical protein PACG_01226 [Pseudomonas aeruginosa C3719] gi|254240756|ref|ZP_04934078.1| hypothetical protein PA2G_01422 [Pseudomonas aeruginosa 2192] gi|126167257|gb|EAZ52768.1| hypothetical protein PACG_01226 [Pseudomonas aeruginosa C3719] gi|126194134|gb|EAZ58197.1| hypothetical protein PA2G_01422 [Pseudomonas aeruginosa 2192] gi|218771936|emb|CAW27715.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 297 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + S AA L +S S++ ++++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++EL +S P G+LR+ ++ L L+ L +F+ YPDI++ L Sbjct: 69 SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P+ S L R+L + +P Y P ++L +H Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 + + P W + R GE P+I V N+ + + + + GIA LPD Sbjct: 186 TCLHY--RFPNTGRLEEW--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV +++ + +P + + KL+AF +F+ Sbjct: 242 FSIREALREGRLVSVLDTFCERRARFFLLWPSGRQVSPKLRAFIDFV 288 >gi|260550884|ref|ZP_05825090.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406011|gb|EEW99497.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624] Length = 345 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 9 MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 69 DRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 129 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 187 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 188 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 245 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 246 RYMLTNH 252 >gi|91781567|ref|YP_556773.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91685521|gb|ABE28721.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 312 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 150/294 (51%), Gaps = 21/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF AAE++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+V +LE + + +SV P G+LR+++ G + + + ++ YP + + + Sbjct: 67 ERLSQVLAELEEAEQAVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R++ T H+ A+P YLK P ++ +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186 Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240 +HN + + ++ P E + + R++ + ++L + VL G+G Sbjct: 187 ARHNYLQYAGVSALEIAPATGEASSRV----------RLTGNLIVNHLEAQRVIVLQGAG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 IA+L ++ D+ LV ++ D + P +Y Y + K+++F +F+ Sbjct: 237 IAMLGTEVIGDDLAAGRLVPLLVDDVPPRELPIYVVYASRRHLSAKVRSFVDFL 290 >gi|254250951|ref|ZP_04944269.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124893560|gb|EAY67440.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 294 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 134/284 (47%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G + Sbjct: 9 AFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + L + + S+ +P G+LR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDLRDAEATVTASAQQPRGRLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D AIR P+ SSL+ R+L A P YL P + ++L+ H Sbjct: 128 DRMVDVVEGGFDAAIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPHAPRDLETH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + P + +W D + + N+ ++ + G GI +PD++ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D LV +++D +P + + + KL+ F +F+ Sbjct: 245 RDALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|15597512|ref|NP_251006.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9948349|gb|AAG05704.1|AE004657_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 297 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + S AA L +S S++ ++++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++EL +S P G+LR+ ++ L L+ L +F+ YPDI++ L Sbjct: 69 SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P+ S L R+L + +P Y P ++L +H Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 + + P W + R GE P+I V N+ + + + + GIA LPD Sbjct: 186 TCLHY--RFPNTGRLEEW--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV +++ + +P + + KL+AF +F+ Sbjct: 242 FSIREALREGRLVSVLDAFCERRAQFFLLWPSGRQVSPKLRAFIDFV 288 >gi|27379710|ref|NP_771239.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27352862|dbj|BAC49864.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 297 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 131/277 (47%), Gaps = 10/277 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D L F +VAR GSFT AA +L +SQS++S I LE + ++L R R ++ T G Sbjct: 5 NLDDLAAFLIVAREGSFTRAAAKLGISQSALSYTIKELEARLKLRLLTRTTRSVSPTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R ++ET + L E KPSG +RI T +L L + L YPDI+ Sbjct: 65 ERLLRNVGPRIAEIETELVALTELREKPSGTIRITATEYATDAVLLPKLAKLLREYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++++ D DI D +R + + + R M AP Y ++ EP Sbjct: 125 LEIVSDYGLTDIVAQRFDAGVRDGEQVARDMIAVRIGPDARMAVVGAPSYFRSRSEPKKP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 +L +HN I +P ++W ++ E ++ L N+ ++Q + G G Sbjct: 185 SQLVEHNCINL--RLPTHGGLYSW--EFEKGSRELKVRVDGQLVFNTTTQMLQAALAGLG 240 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274 +A LP+ +V+ + N L R++ED P + YP Sbjct: 241 LAYLPEGLVRSHINKGRLKRVLEDWCPPYPGYHLYYP 277 >gi|300703398|ref|YP_003745000.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299071061|emb|CBJ42370.1| Transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 294 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 6/257 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F VAR+ + AA++L + Q+++ R+I+ LE E+ KLF R + L LT Sbjct: 1 MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + H T + + + + +G +R+ATT L + + + +P I Sbjct: 61 GEALIGPAETMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRRRHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + +++ AD A+R +P + LI R++ TI YA+ YL+ EP+ Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+L+ L P+ + W A P+ R+ LQ +S ++I + + G G++ Sbjct: 180 GSAFAGHDLV----LYPRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGMS 234 Query: 243 LLPDYIVKDNPNLVRIM 259 L +P LVR++ Sbjct: 235 ELVCCRADLHPELVRVL 251 >gi|330820420|ref|YP_004349282.1| transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327372415|gb|AEA63770.1| transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 296 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A +L +S S++ + I+ LE +G++LF+R R +TLTE+G H Sbjct: 9 AFVRTAETLSFVAAGRKLGISASAVGKTIARLERSLGVRLFHRTTRRVTLTEEGRHFHER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +L + L S+ P G+LR++ + +G L L F YPDI++ L + Sbjct: 69 CHRILEELRDAEATLSASAQTPRGRLRVSLPV-IGYRFLLPVLPAFSARYPDIELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR + + SSL+ R+L A+P YL P + +L H Sbjct: 128 DRLVDVVEGGFDAVIRSGQ-LSDSSLMSRRLGPFRFVLCASPDYLARAGVPRGLADLAAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248 + + ++ ++ L P P + C + N+ ++ + G GI +PD++ Sbjct: 187 EGVRYRFPTTGKLQPWSLLPDGGEP---PNLRCAMTCNNMEALRGAVIAGFGIGFMPDFL 243 Query: 249 VKD---NPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D +LV ++E ++ F++ +P + + + KL+ F +F+ Sbjct: 244 ARDALAAGSLVEVLEPHSIVPGQFSIL--WPSSRQLSPKLRVFVDFM 288 >gi|86158624|ref|YP_465409.1| LysR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775135|gb|ABC81972.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 337 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 136/296 (45%), Gaps = 18/296 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+ V +G T AA +L L +S++SR+++ LE +G++L R+AR L LTE G Sbjct: 9 DDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAGRA 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + + + E E+ P G LRIAT LG+ LL + E LL +P + ++ Sbjct: 69 YHARAARLVAEARALDRETAEARGAPQGTLRIATPALLGE-LLAPAVAELLLRHPRLSVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L +D+ + D A+R P+ SSL+ R+L T+ YA+P YL P + Sbjct: 128 VALAPPHVDLLAEEHDLALRT-GPLADSSLVARRLGTLRTGCYASPAYLARRGTPATADA 186 Query: 186 LDKHNLITFGD--LIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L D L+ + D W A RP G L+V S + Sbjct: 187 LRGEGDAGAHDCILLAEAGTDEVWFFGAGATARTVRPAGR-----LRVPSVRAGQLAARA 241 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP +V ++ LV ++E P V+ YP K++AF + Sbjct: 242 GLGVVRLPAALVAEDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 297 >gi|184158822|ref|YP_001847161.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183210416|gb|ACC57814.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|322507365|gb|ADX02819.1| Transcriptional regulator LysR family [Acinetobacter baumannii 1656-2] gi|323518737|gb|ADX93118.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] Length = 343 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 7 MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 67 DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 127 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 186 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 243 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 244 RYMLTNH 250 >gi|319638889|ref|ZP_07993647.1| LysR-family transcriptional regulator [Neisseria mucosa C102] gi|317399793|gb|EFV80456.1| LysR-family transcriptional regulator [Neisseria mucosa C102] Length = 296 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 139/289 (48%), Gaps = 14/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SGSFT AA+QL +S + S+ +S LE + KL +R++R L LTE G + + Sbjct: 7 LKVFRQVVQSGSFTRAADQLDISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+T + + P G LR+ + + L E+ YP + + L+ Sbjct: 67 RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSTWLAEYRQRYPKVTLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ ID+ + D A+R+ K S SLI + L I AAP YL P + + + Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 +H I +P NW T R GE I ++ ++ L I + G+GI Sbjct: 186 RHQAI-----LPSYTSQQNWEIT-HRQTGEKAILHLSPVIRSDNTLMIRELIKAGAGIGY 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P + V+ + LV+++ D + + Y + + K+++F +F Sbjct: 240 QPLWAVQQELKDGTLVQLLPDYTIWTDQLNATYVDRAFLSAKVRSFIDF 288 >gi|254234449|ref|ZP_04927772.1| hypothetical protein PACG_00299 [Pseudomonas aeruginosa C3719] gi|126166380|gb|EAZ51891.1| hypothetical protein PACG_00299 [Pseudomonas aeruginosa C3719] Length = 302 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +GSFT AA L ++ +++S+ I+ LE E+ +KLF+R RG++L+E G + H Sbjct: 10 LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 T + Y L + L ES +PSG+LRI + + L +NL + L EF+ YP +Q+++ Sbjct: 70 EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +DI + D IRL +Q + + + A P YL P S+ +L Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243 D H + F P+ W D E + V++ +I++ G+GI A Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTETIIEAARAGAGIAQAF 246 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + + D LV ++ P ++ Y KL+AF + R+W+ Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299 >gi|296390295|ref|ZP_06879770.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 302 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +GSFT AA L ++ +++S+ I+ LE E+ +KLF+R RG++L+E G + H Sbjct: 10 LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 T + Y L + L ES +PSG+LRI + + L +NL + L EF+ YP +Q+++ Sbjct: 70 EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +DI + D IRL +Q + + + A P YL P S+ +L Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEHGTPASVADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243 D H + F P+ W D E + V++ +I++ G+GI A Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAF 246 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + + D LV ++ P ++ Y KL+AF + R+W+ Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299 >gi|167892989|ref|ZP_02480391.1| LysR family transcriptional regulator [Burkholderia pseudomallei 7894] Length = 324 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290 >gi|115375470|ref|ZP_01462730.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115367513|gb|EAU66488.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 299 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 18/281 (6%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 V +G T AAE+L L +S++SR+++ LE +G +L R+ R L LTE G + H + + Sbjct: 7 VVATGGITAAAERLGLRKSTVSRRLASLEARLGARLLERNTRRLRLTEAGREYHAHCARL 66 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 + L ES P G LRIAT LG+ LL + EFLL P +++++ L + Sbjct: 67 VAEAREVNKALIESRGTPQGTLRIATLSLLGE-LLTPLIAEFLLRQPRMRVEVSLAPAHV 125 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ + D A+R P+ SSL+ R+L +H YA+P YL++ P ++L H+ + Sbjct: 126 DLIAEEYDLALRT-GPLVDSSLVMRRLGRLHTGCYASPAYLRHRGTPRVPEDLQGHDCV- 183 Query: 194 FGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 L+ + D W + P+ E RI V + S + G G+ LP + Sbjct: 184 ---LLAEPGTDEVWFFGEGPSARTLPV-EGRIRVPSVRAGQSAARA---GLGVVRLPSSL 236 Query: 249 VKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V D+ LV ++E P + YP + K++AF Sbjct: 237 VADDVRAGLLVPLLEAETPPGIPILAVYPSRPQLALKVRAF 277 >gi|296156417|ref|ZP_06839255.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295893016|gb|EFG72796.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 334 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 3/205 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G +L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q + KP GKLRI +G+ L+ +L EF YPDI +QL Sbjct: 67 ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ +Q SSL+ R++ AAP Y++ P S+++L+ Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPDYIERAGMPSSLEDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD 212 H + + + +W VD Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFMVD 208 >gi|260427846|ref|ZP_05781825.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260422338|gb|EEX15589.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 297 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 21/284 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS D D L +F+ + +GSF AA L ++ S+IS++I+ +E +G LF R R +TLT Sbjct: 1 MSQDGD-LAIFHAILDAGSFAGAARHLGVTPSAISKRIAQMEGRLGAPLFVRTTRRMTLT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G T ++ +L + E+ E G +RI ++I LG+ + + +F YP Sbjct: 60 EAGQTYAARTKDLLTQLSAAEDEIAEGIGAIRGPIRITSSIALGRRHVLPIVLDFSEAYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ + L L + +D+ D D A+R + S LI R+L AAP YL P Sbjct: 120 DVAVDLTLTDALVDLIEDGYDLAVR-SAALPDSGLISRRLAGNRRIICAAPGYLARHGAP 178 Query: 181 LSIQELDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYC 235 +L H +T P + +D+ DRP+ R SC NS ++ C Sbjct: 179 TLPDDLAGHACLTLNMRGPFNAWRLGDDW------DRPLELGRGFSC---NSLDALHAAC 229 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPS--FTVYFCYP 274 + G GIA LP ++V + N LV + +DV P+ T+ +P Sbjct: 230 LRGLGIARLPSFLVAEHIANGRLVALFDDVEGPAERSTISLLHP 273 >gi|301347431|ref|ZP_07228172.1| LysR family transcriptional regulator [Acinetobacter baumannii AB056] gi|301512549|ref|ZP_07237786.1| LysR family transcriptional regulator [Acinetobacter baumannii AB058] gi|301595885|ref|ZP_07240893.1| LysR family transcriptional regulator [Acinetobacter baumannii AB059] gi|332850421|ref|ZP_08432741.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332871859|ref|ZP_08440282.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|332730692|gb|EGJ62003.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332731188|gb|EGJ62488.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 337 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 1 MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 61 DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 238 RYMLTNH 244 >gi|167844474|ref|ZP_02469982.1| LysR family transcriptional regulator [Burkholderia pseudomallei B7210] Length = 323 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290 >gi|134292594|ref|YP_001116330.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135751|gb|ABO56865.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 313 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 131/287 (45%), Gaps = 15/287 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA + F+HAA QL+LS S ++R + LE+ +G+KL R R LTE G + Sbjct: 1 MRVFLKVADTHHFSHAAHQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L + + S + G L + L L E+ +P++ + + Sbjct: 61 QGCRSLLADLSEIESRATQESSRIGGDLNVVVLHSLMSPELAALFAEYQSRHPEVSLHIT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++D+ DC I I S S++ R L + A A+P YL P +L Sbjct: 121 LTESEVDLLGGGFDCGIVADTMISSLSVVSRALAHAPLVAVASPGYLLAMTAPQQPADLA 180 Query: 188 KHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H ++ C W+A TVD EPR++ VNS L Q + G GIALL Sbjct: 181 AHRIVGVATGAKTC----RWVAPDGTVDALHVEPRVT---VNSALMQRQLALAGGGIALL 233 Query: 245 PDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286 P++ V + L R++ D +++ V YP GK++AF Sbjct: 234 PEFAVASDLRSGALKRVLADYRLVSDGVAVSLVYPGREFLPGKVRAF 280 >gi|186471326|ref|YP_001862644.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197635|gb|ACC75598.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 305 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 150/300 (50%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VAR SF+ AAE L +S + +S++++ LE ++G +LF+R R + +T+ G + Sbjct: 8 DDLRVFCTVARQASFSAAAEALSVSAAYVSKRVAMLEADLGTRLFHRSTRRVAITDAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ ++ ++ + P G LR++++ G++++ L YP + ++ Sbjct: 68 VYAWAEKILDDVDRLVEDVSTTRRVPRGMLRVSSSFGFGRHVVAPALARLTERYPQLSVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I ++ LI ++L + H AAP YLK P + + Sbjct: 128 LDLFDRIVDVAGEGFDLDIRIGDEI-AAHLIAKRLASNHRVLCAAPAYLKRHGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLSI------MQ 233 L H + + D P G R++ ++V LS +Q Sbjct: 187 LGAHQCLAIKER--------------DHPSGVWRLTERGETVSVKVTGPLSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + V+ D+ LV+++ V P+ V+ YP L ++ K++ +F+ Sbjct: 233 WALAGRGIVLRSIWDVRGLLDSGALVQVLPGVTQPA-NVWAVYPARLASSAKVRVCVDFL 291 >gi|294139722|ref|YP_003555700.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293326191|dbj|BAJ00922.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 292 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 15/289 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +W + F + SFT AA++L+ S + ISR++ LE E+ +LFYR R LTLT Sbjct: 1 MISNWVGVTEFICSVENQSFTKAAKRLNTSTAQISRKVKHLEAELSTQLFYRSTRLLTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ + + +L Q L + G +RI G ++ + +FLL Y Sbjct: 61 EEGKIYYQYSKKANTELLNAQSMLSQYQSSAEGSIRITAPTTYGDQIIAPIVNDFLLKYE 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+I LIL N+ +++ D D A+RL ++ SSLI +KL T +P Y P Sbjct: 121 QIKIDLILTNQRVNLIEDGIDLAVRLGN-LEDSSLICKKLGTRKKSVCVSPEYANKYGIP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++EL N I + D+ W + R+ C N+ +++++ V G Sbjct: 180 KDLEELKNFNCIN-------GLTDY-WSFKTGKVKVSGRLRC---NNSMAVLKAGVQHLG 228 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + LPDY +K+ N +L++I+ + V+ YP + + +K F Sbjct: 229 LIQLPDYHLKEHLKNNSLIQILTEYEAEKEGVWALYPNTRQPSYNVKLF 277 >gi|332875192|ref|ZP_08443025.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|193077849|gb|ABO12726.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC 17978] gi|332736636|gb|EGJ67630.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 337 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 1 MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 61 DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 238 RYMLTNH 244 >gi|298682287|gb|ADI95349.1| LysR family transcriptional regulator [Pseudomonas putida] Length = 301 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 9/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A + SFT A +L +S S+I + ++ LE +G++LF+R R +TLT +G+ Sbjct: 11 LGAFVHAAEARSFTEAGRRLEVSSSAIGKAVARLEERLGVRLFHRSTRAITLTPEGALFL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + EL +++ KP GKLR++ LG L+ +L F YP +++++ Sbjct: 71 ERCHRIFAELEVAERELHQAAAKPQGKLRLSLP-QLGMRLMP-HLIAFQQTYPAVELEMD 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +++ + D +R+ + ++ S L+ R+L A P YL+ P +L Sbjct: 129 FSDRLVNVIEEGFDAVMRIGE-VEDSRLMMRRLQGFSHRIVATPEYLEQRGTPKHPYDLA 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + P + W T D +P+ N+ +M G GIA LPD Sbjct: 188 SHACLHY--RYPSSGKLDAWPLTEDGKPVHLDLPQSAVANAIDPLMAMAEAGQGIACLPD 245 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +I+ D L+ ++E ++ + +P + + K+KAF +F+ + Sbjct: 246 FILVDALAGGRLISLLEAYVSDRRSFTILWPSSRQPLPKIKAFVDFMVAR 295 >gi|237807329|ref|YP_002891769.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237499590|gb|ACQ92183.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 297 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 130/273 (47%), Gaps = 9/273 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F +A GSFT AEQ+ L++S ++RQI+ LE +G+KL R+ R L+LT GS Sbjct: 5 DAMHLFVRIAELGSFTAVAEQMDLARSVVTRQIAALEEHLGVKLMVRNTRRLSLTSAGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E + + E + P G +RI + G L L +F LYPDI ++ Sbjct: 65 YLEKCRVILDLVEAAEASVMEERLTPRGNIRIGLPLSFGLKTLSPLLLKFSGLYPDIDLE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D+ +++ + D AIR+ + ++ RKL T + A A+P YLK +P E Sbjct: 125 MDFDDHQMNLIEEGMDIAIRIAGQLAPGDIV-RKLGTCKLLAVASPDYLKQHGKPQHPSE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L H + + +W VD I ++ N+ ++ + G G+ L Sbjct: 184 LINHACLGY----TLTAGGSSWTFMVDGRHETFYIKTHIKANNGDALTEAAANGLGLTLQ 239 Query: 245 PDYIVKD--NPNLVRIMEDVITPS-FTVYFCYP 274 PD+IV D V + D TP+ +Y P Sbjct: 240 PDFIVNDYLQSGRVETILDEFTPAELGIYAILP 272 >gi|107101762|ref|ZP_01365680.1| hypothetical protein PaerPA_01002806 [Pseudomonas aeruginosa PACS2] Length = 297 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + S AA L +S S++ ++++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++EL +S P G+LR+ ++ L L+ L +F+ YPDI++ L Sbjct: 69 SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P+ S L R+L + +P Y P ++L +H Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 + + P W + R GE P+I V N+ + + + + GIA LPD Sbjct: 186 TCLHY--RFPNTGRLEEW--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV +++ + +P + + KL+AF +F+ Sbjct: 242 FSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV 288 >gi|307726353|ref|YP_003909566.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307586878|gb|ADN60275.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 307 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/301 (26%), Positives = 148/301 (49%), Gaps = 11/301 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LRVF VAR SF+ AAE L +S + +S++I+ LET +G +L +R R + +TE Sbjct: 6 SPDLGDLRVFCEVARKASFSAAAESLQVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +++ ++ ++ ++ + P GKLRI+++ G+ + L F YP Sbjct: 66 AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D++ + D IR+ I + LI R+L + H A+P YL P Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDIRIGDEI-APHLIARRLASNHRVLCASPDYLARHGAPR 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + EL H + I + F W TV +++ L N +Q+ + G Sbjct: 185 QLAELSSHACLA----IKERDHPFGLWRLTVRGETASIKVTGPLSTNHGEVAVQWALAGR 240 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI L + V+ ++ L +++ +V P+ ++ YP L + K++ +F+ + Sbjct: 241 GIVLRSMWDVRPLLESGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQ 299 Query: 297 W 297 W Sbjct: 300 W 300 >gi|213158702|ref|YP_002320000.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|215482844|ref|YP_002325047.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|213057862|gb|ACJ42764.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213989057|gb|ACJ59356.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] Length = 343 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 7 MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 67 DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 127 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 186 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 243 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 244 RYMLTNH 250 >gi|330821525|ref|YP_004350387.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327373520|gb|AEA64875.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 325 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 13/293 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V +GSF AAE+L +SQ +SR I+ LET + I+LF R R ++LT++G + Sbjct: 10 NGMSIFVAVVEAGSFAAAAERLDMSQPGVSRAIARLETRLEIRLFDRSTRAVSLTDEGRR 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 HR + + LE S+ G+LR+ + +L L+ FL +P+++++ Sbjct: 70 FHRQITPLLSGLEEAAATASGSATVVRGRLRVNIDPFFSRLMLGPRLEAFLNQHPELRLE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ ++ D+ D D A+R P + S++ RKL+ + A+P YL PL QE Sbjct: 130 LVTRDQLGDLVADGFDLAVRFGVP-RESAMRARKLLDTRILTVASPDYLARHGRPLKPQE 188 Query: 186 L--DKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H I F D P+ F W +R + E + + L VN +++ C G G+ Sbjct: 189 LGDGRHVCIDFRD--PESGRPFPWEFHRKRERIVVETQ-ARLVVNDVGTMLSACAAGYGV 245 Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL + ++ + LV + D F ++ Y A K +AF +F+ Sbjct: 246 AQVMALGSEALLAEG-RLVELFPDWPDERFPLHALYLSANHPPAKTRAFLDFV 297 >gi|169795311|ref|YP_001713104.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|169148238|emb|CAM86101.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] Length = 345 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 9 MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 69 DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 129 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 187 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 188 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 245 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 246 RYMLTNH 252 >gi|76810135|ref|YP_332367.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|76579588|gb|ABA49063.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] Length = 428 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 111 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 170 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 171 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 230 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 231 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 289 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 290 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 347 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 348 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 394 >gi|330809375|ref|YP_004353837.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377483|gb|AEA68833.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 297 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 6/274 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D+L +F VA+ SFT AA +L +SQ ++SR + LE +G++L R R + TE G Sbjct: 6 YDQLAIFAAVAQERSFTRAAAKLGMSQPALSRAMRQLEERLGVRLLSRTTRSVAPTEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L RV + + +++ L E KP+GKLRI +LQ L L +PD+ I Sbjct: 66 HLLRVVAPRFEEIDNEMAMLSEFRDKPAGKLRITAGEHSAITILQSVLARLLPDHPDLNI 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++I+D DI + D +RL + + R + M +P Y +P+ + Sbjct: 126 EIIVDYGFTDIVAEGFDAGVRLGPQVAKDMIALRIGPDMRMAVVGSPAYFGRYPKPVIPE 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L HN I +P + W + + R+ L N+ ++ + G G+A Sbjct: 186 DLTAHNCINL--RMPTHGGLYIWEFEKNGQELKVRVEGQLVFNTIAMRLEAALQGLGLAF 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 +P+ +V+D L+R++ED P + YP Sbjct: 244 MPEDLVQDAVAQGRLIRVLEDWCEPFSGYHLYYP 277 >gi|49085530|gb|AAT51285.1| PA2316 [synthetic construct] Length = 298 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + S AA L +S S++ ++++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++EL +S P G+LR+ ++ L L+ L +F+ YPDI++ L Sbjct: 69 SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P+ S L R+L + +P Y P ++L +H Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 + + P W + R GE P+I V N+ + + + + GIA LPD Sbjct: 186 TCLHY--RFPSTGRLEEW--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV +++ + +P + + KL+AF +F+ Sbjct: 242 FSIREALREGRLVSVLDAFCERRAQFFLLWPSGRQVSPKLRAFIDFV 288 >gi|325168325|ref|YP_004280115.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064048|gb|ADY67737.1| transcriptional regulator, LysR family protein [Agrobacterium sp. H13-3] Length = 306 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 12/279 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + LR+ + +GS + AA++L S ++SR+++ E +G++L RHAR LT Sbjct: 1 MADEISDLRLLVALVSAGSLSAAAQRLDSSLPAVSRRLAAFEQRLGVRLIERHARRFNLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ LH + ++ + E P G++RI++ + +G+ + + EF YP Sbjct: 61 DEGAALHERAFSILADIDEAEAEASAGKGTPRGRVRISSPVHVGRTQIAPLVAEFRDRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI I+L+L + +D++ D D + + P + S++ RKLV+ AAP YL+ P Sbjct: 121 DITIELMLSDAVVDVAEDDIDIVLHVGVP-TAQSVVTRKLVSGRRIVLAAPAYLERFGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238 +L KH I L+ + FN WL + E +S L S + ++ + G Sbjct: 180 AHPDDLLKHECI----LLMRGRRVFNRWLFKEANGVREVHVSGGLLSTSSEVVYEWILEG 235 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277 GI + + V+D+ + +T Y C P L Sbjct: 236 RGIGIKGSWDVEDD-----LASGRLTECLAPYACDPADL 269 >gi|239502918|ref|ZP_04662228.1| LysR family transcriptional regulator [Acinetobacter baumannii AB900] Length = 337 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 1 MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 61 DRTARILADVADIESSFHDTERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 238 RYMLTNH 244 >gi|238761853|ref|ZP_04622827.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638] gi|238699967|gb|EEP92710.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638] Length = 304 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 148/296 (50%), Gaps = 13/296 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 SF + + +F V +GSF+ AA +L++++S++S++IS E E+G++L +R R L+LT+ Sbjct: 3 SFSY--IPIFIAVVDAGSFSGAAIKLNITKSAVSKRISQFEEELGVRLLHRTTRRLSLTQ 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G K + + + + + KP G LR++ + G+ + + FL P Sbjct: 61 AGLKYYDYARSALQLAKEGEDAITQMQDKPQGILRLSAPMAFGRLHISPLIPPFLSQNPG 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++I +++D++ +++ D IR+ + + S++I R L A+P YL+ P Sbjct: 121 VEINMVMDDRVVNLVEGGFDMGIRIGQ-LADSTMIARPLAPCTSVLCASPEYLRRHGTPQ 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGS 239 S +L +HN + + + FN V R P G QVN+ ++ + G Sbjct: 180 SPHDLSQHNCLFYSYFLGGTEWIFNSHEGVSRFLPKGN-----YQVNNSEALYDALLAGL 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 GI +P +IV + LV ++ + P ++Y YP+ L K++ F +++ + Sbjct: 235 GICQMPKFIVGPALADGRLVSLLPNYRLPKHSIYAIYPQRLHVPAKMRTFLDYLLV 290 >gi|206560399|ref|YP_002231163.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198036440|emb|CAR52336.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 321 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 140/297 (47%), Gaps = 19/297 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA+ LH+S++++++ + LE + +KLF R R + +T G+ Sbjct: 4 FDAMQAFARVVEAGSFTKAADTLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +S P G+LR+ + +L L F +PDIQ+ Sbjct: 64 AYYERVVRLLADMDDAETSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARHPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R +P SL+ R + + + YA+P YL P Sbjct: 124 DMGVSDRVVDVIGENVDCVVRGGEPTD-RSLVARHIGDLRLGVYASPAYLARAGTPSHPA 182 Query: 185 ELDK--HNLITF-----GDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 ELD H ++ F G +P M D + R + ++ N+YL+ + Sbjct: 183 ELDDAHHRVVGFLWARTGKTLPFAMACDGEQVHVRGRYV----LAVDDGNAYLAA---GL 235 Query: 237 LGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ + N LV + +Y +P + KL+ F +++ Sbjct: 236 AGLGILWLPDYMAAAYRANGELVPLFAQWQLEPMPMYVAFPPNRHVSAKLRVFVDWV 292 >gi|107100779|ref|ZP_01364697.1| hypothetical protein PaerPA_01001807 [Pseudomonas aeruginosa PACS2] gi|218892567|ref|YP_002441436.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218772795|emb|CAW28580.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 302 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +GSFT AA L ++ +++S+ I+ LE E+ +KLF+R RG++L+E G + H Sbjct: 10 LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 T + Y L + L ES +PSG+LRI + + L +NL + L EF+ YP +Q+++ Sbjct: 70 EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +DI + D IRL +Q + + + A P YL P S+ +L Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPTYLAEYGTPASVADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243 D H + F P+ W D E + V++ +I++ G+GI A Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAF 246 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + + D LV ++ P ++ Y KL+AF + R+W+ Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299 >gi|310821369|ref|YP_003953727.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309394441|gb|ADO71900.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca DW4/3-1] Length = 309 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 18/281 (6%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 V +G T AAE+L L +S++SR+++ LE +G +L R+ R L LTE G + H + + Sbjct: 17 VVATGGITAAAERLGLRKSTVSRRLASLEARLGARLLERNTRRLRLTEAGREYHAHCARL 76 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 + L ES P G LRIAT LG+ LL + EFLL P +++++ L + Sbjct: 77 VAEAREVNKALIESRGTPQGTLRIATLSLLGE-LLTPLIAEFLLRQPRMRVEVSLAPAHV 135 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ + D A+R P+ SSL+ R+L +H YA+P YL++ P ++L H+ + Sbjct: 136 DLIAEEYDLALRT-GPLVDSSLVMRRLGRLHTGCYASPAYLRHRGTPRVPEDLQGHDCV- 193 Query: 194 FGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 L+ + D W + P+ E RI V + S + G G+ LP + Sbjct: 194 ---LLAEPGTDEVWFFGEGPSARTLPV-EGRIRVPSVRAGQSAARA---GLGVVRLPSSL 246 Query: 249 VKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V D+ LV ++E P + YP + K++AF Sbjct: 247 VADDVRAGLLVPLLEAETPPGIPILAVYPSRPQLALKVRAF 287 >gi|209521529|ref|ZP_03270231.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209498029|gb|EDZ98182.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 306 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 7/296 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SFT +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + L P+G +R+ T+ L ++LL L +F YP I + Sbjct: 64 AFYERCVRILADVVDAESSLSNKRENPAGTIRVDTSGTLARSLLLPALDDFYAQYPAIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ ++ SSL+ +++ + AAP YLK P ++ Sbjct: 124 RLGLADRNIDLIQDAVDCVIRM-GTLEESSLVAKRIGLARIVTCAAPAYLKKYGTPATLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L H + + + + F + VD I + L VN + VLG GI Sbjct: 183 DLTNHRAVNY--VSARTGRTFPFEYEVDGEIERVAMKGTLAVNDGSVYITAGVLGHGIIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 ++V + L I+ + +P + Y + +L+AF ++ AR+ Sbjct: 241 PSRFMVAELIERGALTEILGNYTSPGTPLSILYAHRRNLSSRLRAFIDWFSELARN 296 >gi|300717415|ref|YP_003742218.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299063251|emb|CAX60371.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 304 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 137/281 (48%), Gaps = 8/281 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F ++GS+THAA L L++S+I + I LET +G++L R R L+LT++G ++ Sbjct: 11 AFVAAVKAGSYTHAAGSLGLTRSAIGKSIVRLETRMGVRLLNRTTRSLSLTDEGRVMYDR 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ LE + KPSG LR++ + GQ + L +L +P+++ ++ Sbjct: 71 CRQILDDLEEVDAAMAMRRGKPSGTLRLSAPLSFGQRHILPVLDAYLKKWPELRAEVSFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR+ +P S ++ R + + + A+P YL P + EL H Sbjct: 131 DRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQRIVTCASPQYLSLRGAPKTPAELTGH 190 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + I + + +W AT + L ++S ++ + G GI LP Y+ Sbjct: 191 DTI----FLLSAEKRRSWHFATPEGTFVYEGPGRLNLDSSEAMRASAISGFGIVHLPTYL 246 Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + D+ LV ++E+ P V YP + +++AF Sbjct: 247 LADDVRSGKLVPVLEEYPFPPEPVRIIYPSKRHLSPRIRAF 287 >gi|85710262|ref|ZP_01041327.1| transcriptional regulator (LysR family protein) [Erythrobacter sp. NAP1] gi|85688972|gb|EAQ28976.1| transcriptional regulator (LysR family protein) [Erythrobacter sp. NAP1] Length = 300 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 11/292 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V SGSFT AAE+L ++ SS+SR I+ LE E+G +LF R R + TE G + Sbjct: 4 ENLRTFLAVWYSGSFTAAAEELAVAPSSVSRAIAALEGELGARLFQRTTRAMRPTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L S + + + + L + +G+LRI+++I Q ++ LK F +PD+ I Sbjct: 64 LFPRASGLVEEWDAARQALAGEQAQLAGRLRISSSIAFSQIVIAPMLKRFKADHPDLTID 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +++ + D AIR + ++ SSLI RKL + H A+P + + +E Sbjct: 124 LHLSDDRVNLVEEQIDIAIRHGR-MEDSSLIARKLGAVRYHLVASPRLSEQIGKIEDPEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L + +L+TF + +F R P I+ + L I + + G ALL Sbjct: 183 LRQVSLVTFSFGEFRRQWEFRRGQDTRRVQISPTITA---TNALVIREAVLNDCGAALLA 239 Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 D++++D LV I+ D ++ + ++ YP K + F F+ Sbjct: 240 DWMIEDELERGELVPILPDWNVSGALAQSDLWLVYPSRSFIPAKTRIFAEFL 291 >gi|169633159|ref|YP_001706895.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF] gi|260554423|ref|ZP_05826644.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|169151951|emb|CAP00809.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii] gi|260410965|gb|EEX04262.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 345 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 9 MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 69 DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 129 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 187 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 188 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 245 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 246 RYMLTNH 252 >gi|167917720|ref|ZP_02504811.1| LysR family transcriptional regulator [Burkholderia pseudomallei BCC215] Length = 324 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290 >gi|116049280|ref|YP_791917.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584501|gb|ABJ10516.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 302 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +GSFT AA L ++ +++S+ I+ LE E+ +KLF+R RG++L+E G + H Sbjct: 10 LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 T + Y L + L ES +PSG+LRI + + L +NL + L EF+ YP +Q+++ Sbjct: 70 EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +DI + D IRL +Q + + + A P YL P S+ +L Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEHGTPASVADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243 D H + F P+ W D E + V++ +I++ G+GI A Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTETIIEAARAGAGIAQAF 246 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + + D LV ++ P ++ Y KL+AF + R+W+ Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299 >gi|167822901|ref|ZP_02454372.1| LysR family transcriptional regulator [Burkholderia pseudomallei 9] Length = 409 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 98 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 157 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 158 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 217 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 218 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 276 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 277 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 334 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 335 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 381 >gi|154245318|ref|YP_001416276.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159403|gb|ABS66619.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 308 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 140/283 (49%), Gaps = 10/283 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R+ +A+S S AAEQL ++ S++ R++ LE ++G +LF R G T G Sbjct: 4 WDDFRLVQAIAQSSSLAGAAEQLGVNHSTVFRRLGALEEQLGARLFERARSGYVPTAIGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ R+ + ++ + + + ++PSG+LR+ T L ++L FL YP+I++ Sbjct: 64 EMVRLAERMADEVLSVERRITGQDLRPSGELRVTTNDTLLVHMLTPVFASFLKAYPEIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ N+ + +S AD AIR +P +L+ R++ +I YA PL Sbjct: 124 DVVISNQSLSLSKRDADVAIRASDRP--GDTLVGRRMASIAWAIYARADLAPAT--PLGA 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + +++ I F D + ++ WL + E R+ +VN+ L + + G G+A+ Sbjct: 180 GDFRRYDWIGFSDNL-GGIKPAKWL---RERVDEDRL-VYRVNTVLGLAEAAAEGIGLAV 234 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP +I P LV+I+ ++ +K T +++ F Sbjct: 235 LPCFIAAVTPGLVQIVPPQPEMESGLWLLTHPDIKATARVRTF 277 >gi|134291266|ref|YP_001115035.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134455|gb|ABO58780.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 313 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 136/291 (46%), Gaps = 9/291 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + V + +GSF A E L +SQS +SR I+ LE +G++L R R +TLT++G + Sbjct: 10 NGMGVLAAIVDTGSFAGAGEILDMSQSGVSRAIARLEGRLGVRLLERTTRSVTLTDEGRR 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + LE + + G+LR+ + +L L F+ YP+++++ Sbjct: 70 FYEQVMPLLGALEEATTHATQGATAVRGRLRVNVDPFFSRFVLGPQLGSFIEEYPELRVE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ- 184 L+ ++ D+ D + A+R P Q S+L+ RKL+ + AAP YLK PL Sbjct: 130 LVTRDQLGDMIADGFELAVRFGHP-QPSTLVARKLLETRILTVAAPSYLKRHGRPLQPAG 188 Query: 185 -ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 E D H I + D P F+W R ++ L VN ++ C+ G IA Sbjct: 189 LERDTHACIRYRD--PATGHPFDWEFHRGRKKLVVDVAGRLTVNDVGTMHSVCLAGHAIA 246 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + V+ + LV + D F +Y YP K++AF +FI Sbjct: 247 QVMELGVEAPLADGRLVDLFPDWPDDRFPLYALYPSRRYVPAKVRAFLDFI 297 >gi|288957959|ref|YP_003448300.1| transcriptional regulator [Azospirillum sp. B510] gi|288910267|dbj|BAI71756.1| transcriptional regulator [Azospirillum sp. B510] Length = 307 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 3/198 (1%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSFT AA++L L ++++SR++ LE +GI+L +R R + LTE G+ Sbjct: 11 AFVKVVEEGSFTKAAQRLRLPKTTLSRKVRDLERRLGIRLLHRTTRRIGLTEAGTVYFEH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LE + + + P G LRI T G ++ L EF YPD++I L+L Sbjct: 71 CRRIAGELEQAESAVAQLRDSPRGWLRITTPPSFGMKVIAPLLPEFRARYPDVRIDLVLS 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++++D+ D AIR+ +Q S++ RKL + H YAAP Y P EL +H Sbjct: 131 HENLDLVAREIDLAIRM-GALQDSTMAARKLGVLRRHVYAAPSYCSTYGMPGHPDELVRH 189 Query: 190 NLITFGDLIPKCMEDFNW 207 +T ++ + F W Sbjct: 190 --LTLANMTARRPSGFGW 205 >gi|15887559|ref|NP_353240.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155094|gb|AAK86025.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 293 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG A+++L L+ +++SR+++ LE + +LF R G +TE+ Sbjct: 1 MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ Q L +G +RI LG + L L YPD+ Sbjct: 61 GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI + +P Q L+ KL + YA+ YL + P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERPEQ-GRLMFSKLTDYSLGLYASADYLADHGTPDD 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ L +H I + DLI N+ + R + +++S + G+GI Sbjct: 180 VEALKRHRRIGYVEDLI--FSPSLNYTGEIMRDWD----AAFEISSATGQTEAVRSGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L +YI P L+RIM + S + + Y E+ + +++ +F+ Sbjct: 234 GILHNYIAGQYPELMRIMPH-LGISRSYWTAYHESARQLVRVRTVVDFL 281 >gi|323975925|gb|EGB71020.1| LysR substrate binding domain-containing protein [Escherichia coli TW10509] Length = 304 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+ Y+ +P Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASTDYISRYGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ + LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIAHGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|239816813|ref|YP_002945723.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239803390|gb|ACS20457.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 348 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 145/288 (50%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F VA SF+ AA L +S++++SR ++ LET G++L R R L+LT+ G Sbjct: 5 DLIKTFREVAFRRSFSRAAISLGMSKATVSRYVAELETRSGVRLLNRSTRSLSLTDAGQV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++E+ E T +LQ P G+LR++ L L + EF+ LYPD+ + Sbjct: 65 LLDRSTELVAMAENTLNDLQAHGSHPQGRLRMSAPHGLIAGWLSDVIAEFIQLYPDVYVS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ N D+D+ + D + + I +LI R+LV M A+P Y P ++ Sbjct: 125 LVFTNDDLDLIEEGIDIHLTGGR-IDDMNLIVRRLVPFDMVVCASPAYWARRGIPAVPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+++++ P F T + + P S ++ N +++++ + G+G+A +P Sbjct: 184 LGRHDVLSY-SAKPTTHLPFE---TGGKAVEVPVHSRMEANDAVALIELALRGAGVAYVP 239 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + + LV ++ + + +Y Y + N+ ++ +F+ Sbjct: 240 EPLAQSHLERGALVPVLREHMPSDHWLYAAYSQRRHNSAAMRTMLDFL 287 >gi|226946031|ref|YP_002801104.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226720958|gb|ACO80129.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] Length = 303 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 142/291 (48%), Gaps = 14/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D LR+F V SGS + AA H++ + SR++ LE +G++L R R +LTE+G Sbjct: 5 DISLLRLFVAVVESGSLSSAARAQHITLPAASRKLRQLEESLGVRLLQRTTRRQSLTEEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L+R +V LE + +L S SG+LR+ T I LG+ + L EF L+P++Q Sbjct: 65 ELLYRRAVQVLADLEQVEQQLLRKSAVVSGQLRVTTPISLGRRRIAPLLAEFCALHPELQ 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R ++ SS I R L H A+P Y++ EP S Sbjct: 125 VQIELSDSVLDLVASGMDFAVRF-GGLEDSSYISRPLAPNHRVLCASPEYIRRHGEPRSP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIA 242 +L H+ + G + D+ + RIS V S ++ Q+ + G GIA Sbjct: 184 ADLAHHHCLLIGQ---QSQADWRFEEVT------VRISARLVASDGEVVHQWALDGHGIA 234 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + V D+ L +++ P+ ++ YP +++A +++ Sbjct: 235 LKSIWDVADDLRSGRLRQVLAGHRIPAAPLHAIYPHKHHVAPRVRACIDYL 285 >gi|237810985|ref|YP_002895436.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|237504241|gb|ACQ96559.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] Length = 421 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 104 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 163 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 164 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 223 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 224 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 282 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 283 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 340 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 341 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 387 >gi|217419705|ref|ZP_03451211.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|217397009|gb|EEC37025.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 433 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 116 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 175 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 176 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 235 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 236 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 294 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 295 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 352 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 353 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 399 >gi|319787271|ref|YP_004146746.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317465783|gb|ADV27515.1| transcriptional regulator, LysR family [Pseudoxanthomonas suwonensis 11-1] Length = 340 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 131/294 (44%), Gaps = 5/294 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M++D + VF V GSF AA L L ++++SR++ LET +G +L +R R L LT Sbjct: 1 MAYDLNDTLVFVKVVEQGSFIAAARSLGLPKTTVSRKVQELETRLGAQLLHRTTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ + +LE + + + P G LR +G + L EF YP Sbjct: 61 EAGNVYFEHCQRIAQELEEAEGAVGQLQGGPRGWLRFTVPYSIGIAWISPLLGEFHARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ + + N +D+ D A+R P+ S+LI R+L +A+P YL EP Sbjct: 121 EIRLDMHMSNDQVDLIGSEIDVALR-GGPLPDSTLIARRLAGFRTQVFASPDYLSRHGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H ++ W + E I+ L V + S + VL G Sbjct: 180 LHPDELQHHRILAVRKHYHSHPTRITWPLSDGTDTTEFPINPLMVANDPSALIGAVLCGE 239 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ L D K ++ L R++ P +P + K++AF +F+ Sbjct: 240 GLTLATDVTAKPYVESGALRRVLAGWTGPEVDFNAVFPRGRVMSPKVRAFVDFL 293 >gi|242314165|ref|ZP_04813181.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|242137404|gb|EES23806.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] Length = 417 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 100 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 159 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 160 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 219 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 220 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 278 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 279 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 336 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 337 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 383 >gi|126455277|ref|YP_001065075.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|126228919|gb|ABN92459.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] Length = 415 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 98 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 157 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 158 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 217 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 218 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 276 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 277 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 334 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 335 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 381 >gi|152978820|ref|YP_001344449.1| LysR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150840543|gb|ABR74514.1| transcriptional regulator, LysR family [Actinobacillus succinogenes 130Z] Length = 290 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 14/286 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V ++GS A+E + S +SR+++ LE +G KL R +G+TL + G Sbjct: 7 DDMRLFVSVVQAGSLHLASELTGVPISRLSRRMTQLERALGSKLMDRGKKGVTLNDLGLP 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E +Q+S KP+G LRI+ D+ + L+ L +L PD+ I Sbjct: 67 FFQRAQHMLQLAEQAVSGVQDSLTKPNGLLRISVAGDIMRMLIAPYLPAYLAENPDVNID 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQ 184 + + I++ D D AIR+ I++ +++ RK + I Y+AP YL+ EPL S Q Sbjct: 127 IHQSPQKINMIQDGIDIAIRVGS-IENENVVARKFLDIRFGVYSAPEYLEG-HEPLHSPQ 184 Query: 185 ELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++ +H + +P + ++ L + P G+ L VN YL + G+GI + Sbjct: 185 DIYRHAGVVHALSLPWRFIQGHQRLDIM--PAGK-----LTVNDYLLAAHFIRQGAGIGM 237 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LP ++ P L++++ D P+ + Y KN G + R+F Sbjct: 238 LPTFVGDQTPELIKLLPDWEMPTVPLSVIY---YKNRGTVPTIRSF 280 >gi|296115610|ref|ZP_06834237.1| regulatory protein [Gluconacetobacter hansenii ATCC 23769] gi|295977859|gb|EFG84610.1| regulatory protein [Gluconacetobacter hansenii ATCC 23769] Length = 297 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 12/275 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF VAR SFT AA ++ +SQS++S I LE+ +GI+L R R ++ TE G + Sbjct: 7 NDLQVFLSVARERSFTRAAAKIGISQSALSHTIRHLESRLGIRLLTRTTRAVSPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L E KP+G +R++ + +++L L+ L YPDI+++ Sbjct: 67 LLNRVGPLLDEVDAHIDALSELRDKPAGTIRLSASDHAIKHILWPKLRTILHQYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ DN DI + D +R+ + + R I AP YLKN PL ++ Sbjct: 127 LVQDNGLTDIVTERLDAGVRMGDQLAKDMISARISPDIRFAVVGAPSYLKNNPAPLHPRD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L H I + +P + W D P + R+ L N+ +I++ + G G+A Sbjct: 187 LVSHTCIN--NRLPTLGGFWPWEFQEKDGPEIKIRVDGQLAFNNIFNIIEAALDGFGLAY 244 Query: 244 LPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273 LP+ YI + LVR++E +P + Y+ Y Sbjct: 245 LPEDLALPYISQG--RLVRVLEK-WSPYWDGYYIY 276 >gi|170692588|ref|ZP_02883750.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170142244|gb|EDT10410.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 307 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 148/302 (49%), Gaps = 11/302 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LRVF VAR SF+ AAE L +S + +S++I+ LET +G +L +R R + +TE Sbjct: 6 SPDLGDLRVFCEVARKASFSAAAESLSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +++ ++ ++ ++ + P GKLRI+++ G+ + L F YP Sbjct: 66 AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D++ + D IR+ I + LI R+L + H A+P YL P Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDIRIGDDI-APHLIARRLASNHRVLCASPDYLAREGAPR 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + +L H + I + F W TV +++ L N +Q+ + G Sbjct: 185 QLADLSAHACLA----IKERDHPFGLWRLTVRGEAASIKVTGPLSTNHGEVAVQWALAGR 240 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI L + V+ ++ L +++ DV P+ ++ YP L + K++ +F+ + Sbjct: 241 GIVLRSMWDVRPLLESGQLQQVLPDVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQ 299 Query: 297 WK 298 W Sbjct: 300 WN 301 >gi|163797016|ref|ZP_02190972.1| regulatory protein, LysR:LysR, substrate-binding [alpha proteobacterium BAL199] gi|159177763|gb|EDP62314.1| regulatory protein, LysR:LysR, substrate-binding [alpha proteobacterium BAL199] Length = 301 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 134/292 (45%), Gaps = 6/292 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD LR F VA GS + AA LH++ +++SR + LE ++LF R G LT Sbjct: 1 MNWDDLRYFLAVAGEGSLSGAARSLHVNPATVSRHVDALEERFAVRLFDRRQDGYGLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G KL + + ++ +G + + T L L NL +P I Sbjct: 61 GEKLLARSRGIESEMFALGRAFDAEDRGLAGTVTVTATESLTVPFLIRNLPLLEQRHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+ + + +++S AD AIRL +P Q I RK+ + YA+P YL+ P + Sbjct: 121 RLHLVNEYRMLNLSRREADVAIRLARPEQGDLSI-RKIGVMGFGLYASPAYLEAHGTPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H +I + D P+ + WL R IG+ + N + + G GIA Sbjct: 180 PGDLRDHRVIDWLDGFPENVT-VTWL---RRQIGDT-LPIFSTNPASARLAAARGGVGIA 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 L+P + + +VR++ D P ++ L K++A +FI+ +A Sbjct: 235 LVPCMVAEGVQGVVRLLPDEAIPGVDLWLLVHRDLARLAKVRAVLDFIYDRA 286 >gi|120597618|ref|YP_962192.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1] gi|146294243|ref|YP_001184667.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120557711|gb|ABM23638.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1] gi|145565933|gb|ABP76868.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] gi|319427590|gb|ADV55664.1| transcriptional regulator, LysR family [Shewanella putrefaciens 200] Length = 303 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 148/300 (49%), Gaps = 22/300 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+I+ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + DI + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPSYLKLRGTPATP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISC------LQVNSYLSIMQYCV 236 QEL +H+ I G + W P+G+ PR + ++VNS + + Q + Sbjct: 182 QELSQHSGILLGTSRSAPI----W------PLGKGPRKTMVNFQRKVRVNSPIMVKQLAM 231 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L + K N LV I+++ F VY Y + + F +F F+K Sbjct: 232 DDFGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDF-FVK 290 >gi|161523887|ref|YP_001578899.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351352|ref|YP_001946980.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221211395|ref|ZP_03584374.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|160341316|gb|ABX14402.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189335374|dbj|BAG44444.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221168756|gb|EEE01224.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 294 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 139/286 (48%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +++ + EL +S P G+LR++ TI L+ L F+ YP+I++ L Sbjct: 69 CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLMLPVLAGFMTAYPEIELDLDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R +P S L R L H A+P YL+ P + +L + Sbjct: 126 SDRLVDVVDEGFDAVVRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLVR 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W R P + V N+ + + + + G GIA LP++ Sbjct: 185 HRCLHY--RFPATGKLEIWPLRASRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLPEF 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ D L +++D + VY +P T KL+AF +++ Sbjct: 243 FVREPIDAGTLRTVLDDYVASRTPVYVLWPSGHHPTPKLRAFVDYL 288 >gi|53718371|ref|YP_107357.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|52208785|emb|CAH34723.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] Length = 408 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 91 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 150 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 151 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 210 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 211 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 269 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 270 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 327 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 328 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 374 >gi|300718423|ref|YP_003743226.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661] gi|299064259|emb|CAX61379.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661] Length = 299 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 140/284 (49%), Gaps = 24/284 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++LR + VV +GS T AAEQL + S ISR +S LE ++ L +R R + LT Sbjct: 1 MKITLEELRAWVVVVDTGSITAAAEQLSQTTSGISRALSRLEKKLQTTLLHRTTRRIALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G E+ +ET + ++ + PSG+LR+ +++ L EF YP Sbjct: 61 EEGQIFLEHAREILRSVETAEEQIAQRREIPSGRLRVNAATPFMLHVIVPLLDEFTARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ++L D+ ID+ D AIR+ + ++ SS+ R L + + A+P YL P Sbjct: 121 LIQLELNTDDLVIDLLEQQTDIAIRIGE-LRDSSIHARALGSSRLRLVASPDYLAKYGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQY 234 +++LD H L+ F L D + + V + GEP LQ+ +S + Q Sbjct: 180 TRVEDLDDHRLLGFSQL------DRHNVWPVWKSEGEP----LQIKPTMSASSGETLRQL 229 Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVIT----PSFTVYF 271 V G GI + D++ +++ LV +++D+ P VY+ Sbjct: 230 AVYGQGIVRISDFLSREDRASGRLVTVLDDLTREMHHPIHAVYY 273 >gi|187922237|ref|YP_001893879.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713431|gb|ACD14655.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 309 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 23/308 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F A GSF AA+QL + S++SR I+ LE ++GI LF R RGL LTE G Sbjct: 7 LRAFLYAADLGSFNKAADQLQVKTSTVSRHIAELERDLGIALFNRSTRGLALTEGGHVFR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + P G LR+ G+ + ++ EF+ YP I + ++ Sbjct: 67 EQGAAAIRMLDEACVATSSLNASPQGLLRVTMPTAFGRRHVVAHIPEFMRRYPHIDVDVV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ++ D AIR+ + S L+ R+L A+P +++ P S EL Sbjct: 127 ITDEIVNFVATGVDVAIRV-GVLPDSQLMARRLANHTSVVCASPDHVRLHGVPSSPAELS 185 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI------SCLQVNSYLSIMQYCVLGSG 240 H I F D +W LA G+ L+ N+ +I+ + GSG Sbjct: 186 THPAIRFA-----IAGDDSWFLARQSGADGQEEAVEVKLRGRLRANNIEAILDLAIAGSG 240 Query: 241 IALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNF---I 290 ALLP + + + LVR++ D + ++ YP + K++AF +F + Sbjct: 241 AALLPLWAIGEPLRTGLLVRLLPDWQGQATSSPPAIWGVYPRKKTVSSKVRAFLDFYSDM 300 Query: 291 FLKARDWK 298 F + R W+ Sbjct: 301 FSRERYWE 308 >gi|209885918|ref|YP_002289775.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] gi|209874114|gb|ACI93910.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] Length = 297 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 128/284 (45%), Gaps = 8/284 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ L F +AR AA +L + +++SR+IS LE + +KLF R G LTEQ Sbjct: 2 FNWNDLVFFLELARQNRLAPAARRLRVDHTTVSRRISELERNLSVKLFDRKPDGFVLTEQ 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L V + ++ L + +G++R+ T +G L L E P I Sbjct: 62 GHRLFVVAERIEQEIGNVPQALGAEDMAATGRVRVVTMEGIGAFFLAERLAELAQRQPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + + ++ AD I P L+ RKL + + YA+ Y+ P Sbjct: 122 VVELVTERHIVSLTKREADIFISFIPP-TGQRLVVRKLGSFRLALYASSAYISRNGMPKD 180 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL H + + DLI ++ WL V P+ + +S + G+GI Sbjct: 181 HSELIHHTFVDYVEDLI--AIQPVRWLLDVIDPL----TVSFRSSSMHAQQNAIAAGAGI 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 LLP + K NP LV I+ D + +Y E L+ ++++ Sbjct: 235 GLLPLFSAKRNPGLVPILADAVQVHRDIYLSVHEDLEFLARVRS 278 >gi|107103144|ref|ZP_01367062.1| hypothetical protein PaerPA_01004213 [Pseudomonas aeruginosa PACS2] gi|218890145|ref|YP_002439009.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254236544|ref|ZP_04929867.1| hypothetical protein PACG_02543 [Pseudomonas aeruginosa C3719] gi|126168475|gb|EAZ53986.1| hypothetical protein PACG_02543 [Pseudomonas aeruginosa C3719] gi|218770368|emb|CAW26133.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 302 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA +G FT AAE++ +S S ISRQ++ LE + +L YR R ++L+E G Sbjct: 4 WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + S +P G LR+ + G+ + + F+ YP +++ Sbjct: 64 TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + + S L+ +L M+ A P YL+ P S Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL + N + + +ED T R G R NS +++ + G G+ L Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + + LV ++E P+ V+ YP+ + K++ +++ Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284 >gi|225851601|ref|YP_002731834.1| LysR family transcriptional regulator [Brucella melitensis ATCC 23457] gi|256264890|ref|ZP_05467422.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str. 63/9] gi|225639966|gb|ACN99879.1| transcriptional regulator, LysR family protein [Brucella melitensis ATCC 23457] gi|263095344|gb|EEZ18971.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str. 63/9] gi|326408072|gb|ADZ65137.1| LysR family transcriptional regulator [Brucella melitensis M28] gi|326537788|gb|ADZ86003.1| transcriptional regulator, LysR family protein [Brucella melitensis M5-90] Length = 297 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG +R++ Q++L L+ FL +P+I I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPNIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|113969039|ref|YP_732832.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|117921876|ref|YP_871068.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|113883723|gb|ABI37775.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] gi|117614208|gb|ABK49662.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 303 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+I+ LE E+G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + DI + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPAYLKARGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +EL +H+ I G + P + R + +VNS + + Q + Sbjct: 182 KELSEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSPIMVKQLALDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L + K N LV I+++ F VY Y + + AF +F F+K Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDF-FVK 290 >gi|261211917|ref|ZP_05926203.1| transcriptional regulator [Vibrio sp. RC341] gi|260838525|gb|EEX65176.1| transcriptional regulator [Vibrio sp. RC341] Length = 266 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 133/263 (50%), Gaps = 9/263 (3%) Query: 32 SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91 ++I+R+I LE + ++L RHAR LTLTE G + ++ S + +L + E+ + Sbjct: 5 ATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGA 64 Query: 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151 SG++RI+ +L + ++ F+ YPDI I+L++ N+ D+ D R+ P + Sbjct: 65 SGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQR 123 Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211 SSLI RK+ + A+P+YL N +P +EL +H L+ L+ + + V Sbjct: 124 DSSLIARKIGEVKDILVASPNYLANHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETIV 183 Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFT 268 + G + S L V + C G GI L+PD ++++ + +LV+++ D + Sbjct: 184 NTDRGRFQASALNV-----VRSACSEGLGITLMPDVMLREFLSDGSLVQVLSDWSSNPRD 238 Query: 269 VYFCYPEALKNTGKLKAFRNFIF 291 +Y Y K++ F +F+ Sbjct: 239 IYMLYNHKDHQPEKVRLFIDFVI 261 >gi|154244922|ref|YP_001415880.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159007|gb|ABS66223.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 299 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +LR+F VAR GSF AA L + S++SR ++ LE E+ +L +R R ++LTE Sbjct: 1 MDTAQLRIFVHVARRGSFAAAARDLDMDASAVSRAVAALEAELDARLMHRTTRAMSLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +L+ + E+ + +P G LR+ ++ G+ L L E +P + Sbjct: 61 GQAYLARVEPILDELDRARDEVASARAEPVGTLRLTASVAFGEACLMPLLAEMRTRFPRL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ LIL + ++D++ + D A+RL P + +I +L A+P Y P + Sbjct: 121 KLDLILTDTNLDLATERIDMALRL-APDVRADVIGIRLFATRYRVVASPDYCAREGAPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 QE+ KH I FG + DF W+ D + E + + ++S L+I + G Sbjct: 180 PQEVGKHCAIVFG------LPDFRLRWMFRRDGQVEEVAVRGDIAISSGLAIRRAARDGL 233 Query: 240 GIALLPDYIVKDNPNLV 256 G+ALLPD++V P+L Sbjct: 234 GLALLPDWLV--GPDLA 248 >gi|304395346|ref|ZP_07377230.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304357599|gb|EFM21962.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 305 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 139/286 (48%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF AAE L L S+++ I LE + ++L R R ++LT +G + Sbjct: 7 MQIFIRVAEAGSFVRAAETLSLPSSTVTSTIKNLEKYLQVRLLNRTTRRVSLTPEGLQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E T+ L +S+ +P G+LR+ + ++ NLK+F LYPDI + + Sbjct: 67 AQCREILALIEHTEASLADSNRRPRGRLRVDMPGGIAHFIVLPNLKDFYRLYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR + + S+L+ R L A+P YL+ P + + L Sbjct: 127 VSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWLTCASPDYLREYGIPETPEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H I + + + ++ + P VN ++ C+ G G+A L + Sbjct: 186 QHRAIHYFSGSGRRTNELRFIRGAE-AFSVPVEGDTAVNETGLYIRLCLEGFGLAQLAEN 244 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ N LV ++ D PS V YP + ++AF +++ Sbjct: 245 VISKNLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290 >gi|238021580|ref|ZP_04602006.1| hypothetical protein GCWU000324_01480 [Kingella oralis ATCC 51147] gi|294671432|ref|ZP_06736280.1| hypothetical protein NEIELOOT_03139 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|237866194|gb|EEP67236.1| hypothetical protein GCWU000324_01480 [Kingella oralis ATCC 51147] gi|291306865|gb|EFE48108.1| hypothetical protein NEIELOOT_03139 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 299 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 141/292 (48%), Gaps = 10/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + + F +SGSFT AA+QL L++S+I ++I LE + ++L R+ R L T++G Sbjct: 5 NLNDMTAFVASVKSGSFTAAAKQLGLTRSTIGKRIVRLEARLNVRLLQRNTRNLAPTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + V +LE + L + S++P G+L+I+ + LG+ +L L +FL YP Sbjct: 65 RLFYERCTAVLEELENAEQCLAQRSIEPQGRLKISAPLVLGKTILPPLLADFLHRYPQTS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L + D+ D D A+R P Q SLI R + + M AAP YL P S Sbjct: 125 VELSLTDDYADLISDGYDLALRNGNPPQFDSLIARTVGSQQMLTCAAPGYLVQHGTPQSP 184 Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H + F G + + F G R S ++ ++++ + GI Sbjct: 185 DDLAHHQCLHFLHGGRVSRWR--FQQKGKETTFQGSGRFSA---DNGEALLELALSAFGI 239 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y+V+ D +L ++ D V YP + + K++A + + Sbjct: 240 VQLPHYLVQTALDAGSLKSVLSDFQPKPVPVMAVYPSRKQLSPKVRALVDMM 291 >gi|168229952|ref|ZP_02655010.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168241087|ref|ZP_02666019.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448912|ref|YP_002045592.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471408|ref|ZP_03077392.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249654|ref|YP_002146485.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194407216|gb|ACF67435.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457772|gb|EDX46611.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197213357|gb|ACH50754.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205335563|gb|EDZ22327.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339551|gb|EDZ26315.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 302 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 144/292 (49%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + ++ V GSF AAE L L + +++R + LE ++G+KL +R R +++T++G + Sbjct: 7 EAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +L+ + L S+ P G+LR+ I L + ++ L +F YPDI+I Sbjct: 67 FYQRCLSLLSELDDVR-RLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIV 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DC IRL + + SS + R+L T M AAP YL P SI E Sbjct: 126 LGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184 Query: 186 LDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241 L K H + F ++ W TVD I +I S + V++ + + + G G+ Sbjct: 185 LMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKIPSSILVDNSEAFLSCGLAGLGVLH 242 Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P +I L I+ D P V YP+ K++ F +++ Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292 >gi|167565109|ref|ZP_02358025.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 303 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VVA +G F+ AA QL + SS++R + LE +G+ L R R +TLT+ G+ Sbjct: 7 LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ +P G LR++ + + +L +L FL YP + + L+ Sbjct: 67 DQIGALLSQLVEADESVADAGSEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D D A+R+ P Q L+ R+L+ A+ YL P++ +L Sbjct: 127 VSDAYLDLATDRIDVAVRIGAPAQDPGLVVRRLMENRRIVVASHDYLDTMGTPVAPGDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 H + F P +W + D + ++ + L I++ VL G GIAL+P Sbjct: 187 SHRCLRF----PYRQGRQSWTFSRDGQSDKVEVNGRLTANSLDILRESVLSGQGIALVPT 242 Query: 247 YIVKDNPNLVRIM----EDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ R++ +TP VY Y +++ K++ F F+ Sbjct: 243 WLVHDDVAAGRMLPLFESWCVTPPGGGAQVYAAYLPNRRHSRKVQTFIAFL 293 >gi|157960433|ref|YP_001500467.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845433|gb|ABV85932.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 303 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 145/294 (49%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA ++ + +S+ISR+++ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + S + ++E + ++ + SG LRIA + Q L+ FL LYP+I+ Sbjct: 63 ALFFQHCSSISDEIEAAKATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNIE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D+ + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKIHGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L +H+ I G + P + R + +VNS + + Q + Sbjct: 182 QDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSAVMVKQLVMDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + + K+ + +LV I+++ +F VY Y + + F +F Sbjct: 234 FGIAMLSNSVCKNELASGSLVPILQEWPMEAFKVYGVYSSRRQLATNISVFLDF 287 >gi|78061647|ref|YP_371555.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969532|gb|ABB10911.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 308 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 141/290 (48%), Gaps = 10/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA +G F+ AA +L ++ SS++R + LE +G L R R +TLT+ GS Sbjct: 7 LRAFIDVAETGGFSKAARRLGVATSSVTRLMDALEKSLGSALLTRTTRHVTLTDAGSAYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V L+ + ++ + G LR++ + G+ L ++ FL +P I + L+ Sbjct: 67 EQITRVLSDLDEADGSVSDTGIDAVGPLRVSMPVTFGRLCLGPHIASFLQQHPRISLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D++ + D A+R+ P +LI +L H + A+ YL++ P S ++L Sbjct: 127 LSDSTLDLAAERIDVAVRIGTPANQPNLIVNRLAEHHRYVVASRDYLESNGIPTSPEDLR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + F F + + R+S VN+ + + + G GIALLP + Sbjct: 187 NHQCLRFAYQAALQRWSFTRAGSTEHVEIHGRLS---VNNSDVLREVVISGLGIALLPQW 243 Query: 248 IVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +V+++ L R+ ED + P + VY Y +++ K+ A +F+ Sbjct: 244 LVEEDVMAGRLTRLFEDYSVNPLDQTVCVYAAYLPNRRHSRKVHALLDFL 293 >gi|90577583|ref|ZP_01233394.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] gi|90440669|gb|EAS65849.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] Length = 309 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 140/289 (48%), Gaps = 13/289 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + VF V + G F AAE S S +S++I+ LE+ +G++L R R + LT +G Sbjct: 7 FDGINVFVQVVKCGGFGAAAEVTGHSNSYVSKEITKLESRLGVRLLNRTTRSIALTPEGK 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E E+ +S+V+P G L+++ + G++ L +L YP++ + Sbjct: 67 TYYQECVQLISDAEQAIAEITQSTVEPKGTLKVSCPVWFGKHYLADVFTTYLSRYPEVTL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +K ID+ D D IR + SSLI +++ + + YLK+ P Sbjct: 127 DLDMSDKPIDVIADGYDLVIRATAKLDDSSLICKRIYRSRICTVSTKQYLKDHGYPQHPS 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSG 240 EL H+ + +L + FN +D+ + E + L N+ +S ++ G G Sbjct: 187 ELSAHSCFCYTNL-----KKFNMWEYLDKAGNKTLVEVQQRVLSNNTEMS-LELVTKGLG 240 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I +P++ ++ + +L + +D I P VY YP T K++ F Sbjct: 241 IIRVPEFYIETQLQSGDLTLLFDDYIFPEIDVYALYPTRKHVTSKVRFF 289 >gi|330821362|ref|YP_004350224.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327373357|gb|AEA64712.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 319 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 148/297 (49%), Gaps = 18/297 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F +GSFT AA++L LS+ +SR+++ LE + ++L R+ R L +TE G Sbjct: 4 DDLRIFLATVDAGSFTGAADKLLLSKQFVSRRMAALEAALHVRLLNRNTRKLAVTESGQA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + + + G L+I+ + G + L L EFL +P ++++ Sbjct: 64 FYLHAQRILAEVAQAEEAMSARRTELHGSLKISAPMSFGMSHLSPLLAEFLAAHPAVRLE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R+ + + S+L+ R L T+ M A +P Y ++ EP + E Sbjct: 124 VELSDRRVDLIGEGFDLALRIGQ-LADSTLVARTLGTLRMIACCSPAYRRSHGEPTAPAE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241 L +H + +G + + + + + P G R +Q N+ + + G G+ Sbjct: 183 LHRHACLLYGQ---ESRDGWEF----ETPEGR-RAYAVQGPLIANNGDVVRDAAIAGLGV 234 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 ALLP +IV + LV I+ TP + YP+ + + ++ F FL+ R Sbjct: 235 ALLPQFIVGPAIASGALVTILAAHATPPLRLSAVYPQHRQGSTAIRTL--FAFLEER 289 >gi|313202143|ref|YP_004040801.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gi|312441459|gb|ADQ85565.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 314 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 152/291 (52%), Gaps = 8/291 (2%) Query: 1 MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+ D ++ ++ F V SFT AA L+L +++IS Q+ LE +G+KL R R +++ Sbjct: 1 MAMDRFEAMQAFTRVVELASFTKAALSLNLPKTTISAQVQALENRLGVKLLNRTTRHVSV 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G+ + + ++LE T+ L++++ +PSG+LR+ +G+ +L L +F Y Sbjct: 61 TTDGAAYYERAVALLNELEETEAALRQATSRPSGRLRVDVPGSIGRRILIPALADFTEKY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PDI +++ +++ +D+ + DC IR P+ SL+ R++ ++ A P YL+ Sbjct: 121 PDIILEMGCNDRPVDLLEEGVDCVIRGGDPLD-QSLVARRVASLRFVTCATPGYLRKHGI 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLG 238 PL ++L++H I + + +F++ +R + R + N + + C+ G Sbjct: 180 PLQPRDLERHTGIHYFSSKTGKVYEFDFERDGERYEVSSHRK--MIFNDGDACLAACLAG 237 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ ++V++ + L ++ ++ + +Y YP+ + K++AF Sbjct: 238 LGVFQAATFMVQEHIASGELQVVLGTHLSENLPLYVLYPQNRHLSSKVRAF 288 >gi|296162233|ref|ZP_06845028.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295887500|gb|EFG67323.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 305 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 145/296 (48%), Gaps = 7/296 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SFT +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L P+G +R+ T+ L + LL L +F YP+I + Sbjct: 64 LFYERCVRILAEVAEAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ P + SSL+ R++ + A+P YL+ EP +++ Sbjct: 124 RLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPTTLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L +H + + + + + F + VD + + + S L VN + VLG GI Sbjct: 183 ALSEHRAVNY--VSARTGKTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 ++V D L I+ +P + Y + +L+AF ++ AR+ Sbjct: 241 PSRFMVSDLIKQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296 >gi|172065125|ref|YP_001815837.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997367|gb|ACB68284.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 294 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLAAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRQGTPDT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +L H + +G W VD G R +Q N+ + + G Sbjct: 180 PADLAAHTCLLYGR-----ERRVGWEFRVD---GAARTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP +IV D+ LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|226199393|ref|ZP_03794951.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|225928469|gb|EEH24498.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] Length = 415 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 98 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 157 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 158 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 217 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 218 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 276 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 277 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 334 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 335 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 381 >gi|206580017|ref|YP_002237030.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206569075|gb|ACI10851.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 294 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF AAE L L S+++ I LE + ++L R R ++LT +G + Sbjct: 7 MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E ++ L ES +P G+LR+ + ++ +L +F YPDI + + Sbjct: 67 AQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR+ + + +SSL+ R L A+P YL+ P S + L Sbjct: 127 VSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGCFRWVTCASPDYLREYGVPSSPEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H + + + ++F ++ T P+ VN ++ C+ G G+A L Sbjct: 186 QHRAVHYFSGQARRADEFRFVRHGETFSVPVS----GNAAVNETGLYIKMCLAGFGLAQL 241 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + IV D+ LV ++ D P V YP + ++AF ++ Sbjct: 242 AENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 290 >gi|134279870|ref|ZP_01766582.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|134249070|gb|EBA49152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] Length = 441 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 124 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 183 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 184 EHCIKIITEITETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 243 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 244 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 302 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 303 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 360 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 361 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 407 >gi|254242328|ref|ZP_04935650.1| hypothetical protein PA2G_03069 [Pseudomonas aeruginosa 2192] gi|296387866|ref|ZP_06877341.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313109034|ref|ZP_07795007.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|126195706|gb|EAZ59769.1| hypothetical protein PA2G_03069 [Pseudomonas aeruginosa 2192] gi|310881509|gb|EFQ40103.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 302 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA +G FT AAE++ +S S ISRQ++ LE + +L YR R ++L+E G Sbjct: 4 WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + S +P G LR+ + G+ + + F+ YP +++ Sbjct: 64 TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + + S L+ +L M+ A P YL+ P S Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRLMYLCATPEYLRRHGTPQSPT 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL + N + + +ED T R G R NS +++ + G G+ L Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + + LV ++E P+ V+ YP+ + K++ +++ Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284 >gi|296155935|ref|ZP_06838774.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295893441|gb|EFG73220.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 296 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 143/289 (49%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + +FT AA +L LS+ +SR++ LE +G++L R+ R L +T+ G + Sbjct: 4 DDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDLGQE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + + G LR++ + G L + FL + D++ + Sbjct: 64 FYERAKRILGEVEDAEQAMSLRRAGLRGLLRVSAPMSFGMAHLSPLVAMFLREHGDVRFE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D AIR+ + S+LI +KLV I + A +P Y++ P + Sbjct: 124 MDLSDRTVDVVGEGFDMAIRI-GALPDSTLIAQKLVDIRVVACCSPGYVRRRGTPAVPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L++H+ + +G +W VD + L+ N+ + + G GI L Sbjct: 183 LERHSCLLYGH-----GGAVSWEFVVDGVTKGVEVHGPLRANNGELVRDAAIAGLGIVRL 237 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+IV D + LV ++ED + + VY YP+ +++ ++A F+ Sbjct: 238 PDFIVADALRSGQLVPVLEDFLPTATGVYAVYPQHRQSSLTIRALVEFL 286 >gi|311693827|gb|ADP96700.1| transcriptional regulator, LysR family protein [marine bacterium HP15] Length = 296 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++ F V +GSF A+E L +S++++SR +S LE+ +G++L R R L+LT +G Sbjct: 6 EMQTFCNVVEAGSFVAASESLGMSKAAVSRYVSELESRLGVRLLQRTTRRLSLTGEGEVF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +E + E+ + G LR+ + G + L EF YPD+++ + Sbjct: 66 YVRCRELLAGVEEAEAEITSRNDVARGTLRVNAPVSFGISHLAPLWGEFHARYPDVELSI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +DI + D AIR+ +QSS+L+ R++ + + A A+P Y+ P ++L Sbjct: 126 DLSDRLVDIVEEGFDMAIRI-ATLQSSTLVSRRITSTRLIACASPDYIATHGSPAKPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +I + + +W + P G + + N+ + + G GI L Sbjct: 185 ASHRIIGYSNF----TTGNDW--PFEGPEGATSVRVRPWMYANNGETCCGAALAGQGIVL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V + LV +M + VY YP T K++A +++ Sbjct: 239 QPGFLVHKDLEAGRLVELMPAYRSTELGVYAVYPTRKFVTPKVRALVDYL 288 >gi|270261837|ref|ZP_06190109.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043713|gb|EFA16805.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 302 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 139/281 (49%), Gaps = 8/281 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F ++GS+THAA L L++S+I + I LET +G++L R R L+LT++G + Sbjct: 11 AFVAAVKAGSYTHAAGSLGLTRSAIGKSIVRLETRMGVRLLNRTTRSLSLTDEGRVMFDR 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ LE + KP+G LR++ + GQ + L +L +P+++ ++ Sbjct: 71 CRQILDDLEEVDAAMAMRRGKPTGTLRLSAPLSFGQRHILPILDVYLKKWPELRAEVSFS 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR+ +P S ++ R + + H+ A+P YL + P + +L +H Sbjct: 131 DRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQHIVTCASPEYLSSRGVPETPADLTRH 190 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + I + + +W AT + L ++S ++ + G GI LP Y+ Sbjct: 191 DTI----FLLSAEKRRSWRFATPEGTFVYEGPGRLNLDSSEAMRASAIAGFGIVHLPTYL 246 Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + ++ L+ ++E+ P V YP + +++AF Sbjct: 247 LGEDLRSGKLIPVLEEFPFPPEPVRLIYPSKRHLSPRIRAF 287 >gi|254258123|ref|ZP_04949177.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254216812|gb|EET06196.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 395 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 78 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 137 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 138 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 197 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 198 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 256 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 257 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 314 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 315 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 361 >gi|254181679|ref|ZP_04888276.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|184212217|gb|EDU09260.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 407 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 90 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 149 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 150 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 209 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 210 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 268 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 269 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 326 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 327 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 373 >gi|254296273|ref|ZP_04963730.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157806130|gb|EDO83300.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] Length = 397 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 80 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 139 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 140 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 199 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 200 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 258 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 259 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 316 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 317 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 363 >gi|126442213|ref|YP_001057833.1| transcriptional regulator [Burkholderia pseudomallei 668] gi|126221706|gb|ABN85212.1| transcriptional regulator [Burkholderia pseudomallei 668] Length = 435 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 118 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 177 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 178 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 237 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 238 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 296 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 297 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 354 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 355 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 401 >gi|187476841|ref|YP_784865.1| LysR family transcriptional regulator [Bordetella avium 197N] gi|115421427|emb|CAJ47932.1| LysR-family transcriptional regulator [Bordetella avium 197N] Length = 340 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 111/190 (58%), Gaps = 1/190 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AAE L L +++++ I LE +G++L R R ++LT G+ Sbjct: 4 FQAMQVFVRVVEANSFTRAAESLTLPRTTVTTIIQNLERHLGVRLLNRTTRRISLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + ++ T+ LQ+++ +P G+LRI +GQ +L L +F YPD+++ Sbjct: 64 AYYKHATRILAEVYETEACLQDAAARPQGRLRIDVPASVGQLILIPALCDFHTRYPDVEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR + ++ SSL+ R++ T+ A P YL+ P S+Q Sbjct: 124 VIGMGDRKVDLVQEAVDCVIRSGE-LEDSSLVARRIGTVQTVTCATPSYLERYGTPESLQ 182 Query: 185 ELDKHNLITF 194 +L++H+ + + Sbjct: 183 DLERHHAVHY 192 >gi|34498937|ref|NP_903152.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34104786|gb|AAQ61143.1| probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472] Length = 315 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 24/292 (8%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-- 67 +F V +GSF+ AAE+L L++S++S+++ LE + ++L R R L+LTE G + + Sbjct: 9 IFVAVVEAGSFSAAAERLGLTKSAVSKRVQQLEAGLNVRLLQRTTRSLSLTEAGERYYDR 68 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + + E LQ +P G LR+A + G+ L EFL YPDIQ+ L Sbjct: 69 ARGALALAREAEEVAAGLQG---RPQGLLRVAAPMAFGRLHLSPLAAEFLRRYPDIQLDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +D++ +D+ D A+R+ + + ++ R+L + A+P YL P EL Sbjct: 126 AMDDRMVDLVEGGYDLAVRIGN-LPDNRMVARRLAPCRVAVCASPDYLAAHGRPAHPSEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +HN I + W T P GE R+ QVN+ + + G GI Sbjct: 185 ARHNCIHYS----YYRGGAYW--TFQGPDGEIRVQPRGNYQVNNSEARRDALLAGLGICE 238 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +IV P+L ++ D P ++ +P+ + K +AF +F+ Sbjct: 239 MPTFIV--GPDLAAGRLEAVLTDYPLPPHAIHVVFPQ-RRLPAKARAFIDFL 287 >gi|313108025|ref|ZP_07794191.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310880693|gb|EFQ39287.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 291 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 149/294 (50%), Gaps = 10/294 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA +GSFT AA+ L + ++++S + LE ++G +L +R R + LT GS + Sbjct: 1 MRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSVVL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S + SG+L++ + + L+ L EF +PDI+++L Sbjct: 61 ERCRHLLEDMEELESLFHDGS-RASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELELG 119 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ + + +SSL+ R+L + + A+P YL+ EP + +LD Sbjct: 120 SSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPADLD 178 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + P W D R + S + VN+ S + C+ G G+ +P Sbjct: 179 RHWAVNYAS--PSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQIPA 236 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 Y V+++ L ++ + Y YP + +++AF +++ L+AR Sbjct: 237 YDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 290 >gi|33594412|ref|NP_882056.1| LysR family regulatory protein [Bordetella pertussis Tohama I] gi|33564487|emb|CAE43800.1| LysR family regulatory protein [Bordetella pertussis Tohama I] gi|332383823|gb|AEE68670.1| LysR family regulatory protein [Bordetella pertussis CS] Length = 302 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D+ RVF VA GSF AA L L ++S+S + LE +VG +L +R R + LT G+ Sbjct: 4 FDQYRVFAQVAEMGSFIKAAHTLELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTADGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++E Q S + +G+L I + + L+ L L +P +Q+ Sbjct: 64 QLLERIRPLLAEVEDIDQLFQASQRQAAGRLNIDVPSRIARRLVAPALPALLRRHPRLQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ + DCA+R+ + SSSL+ R L ++ + A+P YL+ EP Sbjct: 124 ALGSGDRAIDLVREGVDCAVRI-GVLHSSSLVVRPLGSLALINCASPAYLREHGEPGHPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 EL + T G P+ W P G + S + VN+ S + C+ G G Sbjct: 183 ELAAGHW-TVGYASPQTGRALPWECAT--PRGGTNLVEAASRVVVNNAESYIACCLAGLG 239 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + +P Y V+ D LV +M D S V YP + + +L F Sbjct: 240 LIQIPRYDVQHLLDGGQLVEVMPDRRAASMPVALLYPHRRQRSRRLAVF 288 >gi|258543481|ref|YP_003188914.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634559|dbj|BAI00535.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-01] gi|256637617|dbj|BAI03586.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-03] gi|256640669|dbj|BAI06631.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-07] gi|256643726|dbj|BAI09681.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-22] gi|256646781|dbj|BAI12729.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-26] gi|256649834|dbj|BAI15775.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-32] gi|256652822|dbj|BAI18756.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655878|dbj|BAI21805.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-12] Length = 305 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 3/244 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++F V +GSFT AA + LS + +++ ++ LET +G+ LF+R R L+LTE G Sbjct: 7 SMQIFVKVIAAGSFTGAARLMALSPTMVTKHVTALETRLGVSLFHRSTRHLSLTEAGRLF 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + + E +P G+LR+ + + L EF YP +QI+L Sbjct: 67 LESCQKILADVENMEQTVSEQYREPRGQLRLNAPVSFAIRYVAPYLSEFSRRYPQVQIEL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L+++ +D+ + D +R+R + S+L RKL + M A+P YL P + EL Sbjct: 127 GLNDRPVDLVEEGWDLTLRIRN-LTISTLRARKLAAVRMVICASPSYLAKAGTPTHVDEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN + + +++ ++ + + C N+ ++ + V G+GIA LP Sbjct: 186 QHHNCLGYTLSGNNSASRWHFGDNGEKTVSVSGLLC--ANNGDALREAAVAGAGIAYLPL 243 Query: 247 YIVK 250 ++V Sbjct: 244 FVVS 247 >gi|330810481|ref|YP_004354943.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378589|gb|AEA69939.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 292 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 142/290 (48%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F V SGSFT AAE+L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEEMRIFAQVMESGSFTAAAEKLGLSKQFVSRKLMELEQRLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + +++E + + + +P G +R++ + L L FL YP + + Sbjct: 64 RYYEAALRLLNEVEQVEQGISGQTSEPRGTIRLSAPLSFAVAHLGSLLPLFLQRYPGVSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ S+LI R++ TI A+P YL P + Sbjct: 124 EVDLSDRSVDLLGEGYDLALRI-GVLEDSTLIARRIATIERVYCASPTYLAQKGTPARPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ + +G W +P+ ++ N+ + + G GI Sbjct: 183 DLRNHDCLPYGH-----SRQVQWRFVGAGKPLTLEVTGRMRANNGDLLRDAAIAGMGITY 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +I+ D + L++++E T + YP+ ++ ++A F+ Sbjct: 238 LPAFILGDALKDGRLIKVLEGFETEPLALSAVYPQHRQSARPVQALVEFL 287 >gi|167838727|ref|ZP_02465586.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 334 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 143/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLR+ +G+ ++ +L EF YPDI +Q+ Sbjct: 67 ERCVRILADVEETEASFQVNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPDIDLQIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL+ EP +I+ L Sbjct: 127 LTDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQTIEALA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E +++ L VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFGLIQPPL 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N L ++ + YP + + K++ F +++ Sbjct: 244 FMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWV 290 >gi|323498536|ref|ZP_08103529.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323316425|gb|EGA69443.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 303 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 145/289 (50%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V G F+ AA++L +++S++S++I+ LE E+GI+L +R R L+LTE G Sbjct: 4 FSSIPVFVAVVECGGFSPAADKLKITKSAVSKRINQLEDELGIRLLHRTTRKLSLTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + S+ + + E +P GKL++ + G + + EFL LY D++I Sbjct: 64 RYYSYVSQSLSLAQQGVDAVTELQGQPRGKLKLTAPMSFGVQYVAPLVAEFLALYSDVEI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+++ +D+ D IR+ + S+L+ ++L A+ YL +P Sbjct: 124 DLQLEDQMVDLIESGFDIGIRIGH-LPLSNLVAKRLTPCKSILCASEDYLNQFGQPTRPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN + + + ++ + + PR L VN+ +I + + G GI L Sbjct: 183 DLTQHNCLQYAYF--RGGNEWTFTSHGKEFKVMPR-GRLVVNNSEAIRRALLEGLGIGQL 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV + L+ +M++ P VY +PE K++AF +FI Sbjct: 240 PTFIVAKDIAAGKLMGVMQEYQLPEHAVYAVFPERKHMPLKVRAFLDFI 288 >gi|209518023|ref|ZP_03266854.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501527|gb|EEA01552.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 300 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIETFATVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 66 LEDCQRILHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P S+ +L Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLAENRRVCVASPAYLSRRGAPHSLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + G + W+ D + ++S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGTEIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|207723659|ref|YP_002254057.1| transcription regulator protein [Ralstonia solanacearum MolK2] gi|206588862|emb|CAQ35824.1| transcription regulator protein [Ralstonia solanacearum MolK2] Length = 299 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 132/285 (46%), Gaps = 7/285 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F GS + AA +L LS RQ+ LE +GIKL R R +LT+ G + Sbjct: 7 MQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGALGIKLLNRTTRRQSLTDGGRLFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E Q ++ ES P G+LRI+ I G L L EF+ +PDI ++L Sbjct: 67 ERAKNILAEMEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDITVELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D A R + S L+ R+L + A+P YLK +P + ++L Sbjct: 127 LTNRTVDLVDEAFDAAFRT-GDLPDSGLMARRLAPHRLILCASPAYLKMRGQPRTPEDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 KH + F + F+ D + P +S ++ V G GI L P Sbjct: 186 KHECLVFAHTSLRTQWSFDG---PDGSVKVPIKGRFLADSGEALRAAAVAGVGIILQPAE 242 Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 ++ ++ L RI++ ++ Y + T KL++F +F Sbjct: 243 LLAEDIQTGLLTRILKRYEPTPRPLHVLYAPDRRMTQKLRSFLDF 287 >gi|260459260|ref|ZP_05807515.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259034814|gb|EEW36070.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 311 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 141/285 (49%), Gaps = 13/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSF AA+++ LS +++S+ + LE +G +L R R ++LTE G+ ++ Sbjct: 7 MTVFANVVSEGSFAGAAKRMRLSPAAVSKHVHLLEEWLGARLLNRTTRRISLTEVGASVY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E + ES +P+G LR++ I G L + E+L YP++ ++L+ Sbjct: 67 ERSLRILEDVEDVRTSAAESHARPTGSLRVSAPISFGALYLGKVVAEYLAAYPEVSVELV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +DI + D A+R+ P+ S+LI R++ A+P Y+ P +L Sbjct: 127 LDDRVVDIVEEGLDVAVRI-APLTDSNLIARRIAPSWEVICASPEYIDRRGRPTKPSDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVL-GSGIALL 244 H+ + + + F D P GE ++S + +++ L G+GI L Sbjct: 186 DHDCLDYALRAGRGKWRF------DGPEGEVAVKVSARMTATNGQLLRDAALSGAGIVLG 239 Query: 245 PDYIVKD--NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAF 286 P +++ + + I+ + P ++Y YP + K+++F Sbjct: 240 PTFLLGEAVRSGWLEIVMPLFKPVGRSIYAVYPSRRHLSAKVQSF 284 >gi|291085350|ref|ZP_06352831.2| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] gi|291070710|gb|EFE08819.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] Length = 305 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 12/292 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V G F AAE LHL + ++++ I LE ++G KL R R ++LT++G Sbjct: 2 FEYMNIFVQVVEQGGFARAAEVLHLHRPAVTKAIQHLEDDLGAKLLNRTTRKVSLTDEGE 61 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ T + ++ + P GKLR+ + L ++L LK+F YPDI++ Sbjct: 62 AFYQRTKVLLADVDDIMASFSPTR-PPRGKLRVNAPLSLAHSVLVPALKDFQSRYPDIEM 120 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ + DC IR+ + +Q SSLI R+L + M A+P YL+ P + + Sbjct: 121 ILTSTDRRIDLLAEGIDCMIRIGE-LQDSSLISRRLGAVKMVTCASPDYLQQHGIPQTPE 179 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-- 241 +L +H + F + E W + D + + V++ ++ C+ G GI Sbjct: 180 DLSRHQAVNF--FSERHREALEWSFVSADETVSFTPAGRISVDNSDILLTGCLAGLGIIR 237 Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+L Y+ + LV ++ + S V YP+ +++ F +++ Sbjct: 238 GVHAVLAPYL--QSGQLVEVLANYAGESKPVSVLYPDRRHLAPRVRVFIDWL 287 >gi|78066008|ref|YP_368777.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77966753|gb|ABB08133.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 307 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 5/290 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA+ L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 6 DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G L L FL YP + Sbjct: 66 ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPVLPAFLERYPRVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + SSL R+L + A+P YL P Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRRGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +++++H +T+ +L F A+ D +G ++ N+ I+ + G G+AL Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRQPASGDE-VGVSVHGRIRTNNADVIVPALIAGHGLAL 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V + N L +M D V P + ++ +F+ Sbjct: 244 QPEFLVWEAMQNGELEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFL 293 >gi|83749104|ref|ZP_00946109.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|83724225|gb|EAP71398.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 290 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 137/295 (46%), Gaps = 17/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AAE + + S++SR+I LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E +PSG LR + +D L + EF LYP I Sbjct: 65 YFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ P + S LI R L ++ H YA+P YL EP + Sbjct: 125 FDLTPRRVDLVSEPFDVAIRM-GPSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L++H ++ ++D ATV +G +NS I + VL GI L+P Sbjct: 184 LERHECLSILKAGSWTLQDGKRTATVS--VG----GRFTLNSVGMIRRLAVLDLGIVLMP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI-FLKAR 295 + IV D + L RI+ VY A+ T L A + FI FL+AR Sbjct: 238 EEIVADELASGKLRRILPGWHGTPMPVY-----AITETRLLPAKTQRFIEFLRAR 287 >gi|297539930|ref|YP_003675699.1| LysR family transcriptional regulator [Methylotenera sp. 301] gi|297259277|gb|ADI31122.1| transcriptional regulator, LysR family [Methylotenera sp. 301] Length = 299 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F VA GSFT AA+ L L ++S+S + LE +G +L +R R + LT G Sbjct: 5 DAIKRFVRVAELGSFTKAADALGLPKASVSLAVQQLENRLGTQLLHRTTRKVQLTPDGQI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V +++ Q G +R+ + + N++ L EFL YP++Q+ Sbjct: 65 FYERGKDVLAEMDELDSLFQTDDASIRGLIRVDMSYPMAHNIVIPRLPEFLSRYPNLQVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC IR K +Q S LI R L + YA+P YL EPL +++ Sbjct: 125 LSSTDRQVDLIAEGFDCVIRTGK-LQDSGLIVRNLGVLTQTNYASPAYLAQHGEPLRLED 183 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H LI + + F W + I P S L VN+ C+ G GI Sbjct: 184 LSNHWLIHYCVNAATKFDMFEYWDGQACQRISMP--SRLSVNNADGYQAACLAGLGIIQA 241 Query: 245 P----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V + LV I++ P+ V YP + +++ F +++ Sbjct: 242 PLIGGAKLVAEG-KLVEILKKFGAPAMPVSLVYPHRRNLSKRVRIFMDWL 290 >gi|161504629|ref|YP_001571741.1| hypothetical protein SARI_02745 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865976|gb|ABX22599.1| hypothetical protein SARI_02745 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 304 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 145/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V GSF+ AAE+L + S+ISR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVAVIEGGSFSRAAERLGQANSAISRSVKKLEMKLGVNLINRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + + + E+ E+ P G LRI + + L +K F YP Sbjct: 61 EEGERYFRRVQIILQDMAAAETEILETRNTPRGLLRIDAATPVILHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++ L+ I++ D AIR + SSL R L T + A+P Y+ P Sbjct: 121 EVKLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIDLYGAP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 S++EL +H + F + P + W +A D + E S L NS ++ Q C+ G+ Sbjct: 180 KSVEELKQHVCLGFTE--PLLLN--TWPVACCDGQLYEIH-SGLSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D P F+ + A+ + +++AF +F+ Sbjct: 235 GIACLSDYMIDKEIAQGTLVELMTDKRLPVEMPFSAVYYSDRAV--SPRIRAFVDFL 289 >gi|322831725|ref|YP_004211752.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|328725476|ref|XP_003248492.1| PREDICTED: uncharacterized HTH-type transcriptional regulator yafC-like [Acyrthosiphon pisum] gi|321166926|gb|ADW72625.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 302 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 140/295 (47%), Gaps = 20/295 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + L F VA + SF A L +S S++ + I+ +ET + ++LF+R R +TLT +G Sbjct: 3 NLSSLNTFVQVAETRSFVAAGRILGVSASAVGKSIARMETRLNVRLFHRSTRSVTLTVEG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + +LE + EL + + P G+LR+ ++ LL L EF+ YPDI Sbjct: 63 TLFLERCRRIVAELEAAESELSQLAESPRGRLRL--SLPQVSTLLLPVLGEFMRRYPDIG 120 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L ++ +D+ + D +R + + S L RKL T H AP Y + P Sbjct: 121 LDLDFTDRIVDVVEEGFDAVVRTGQ-LADSRLSMRKLGTFHHLLVGAPDYFEQYGTPAKP 179 Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL +H + F G L P + ++ L+ P+ + N+ + + + G Sbjct: 180 QELVEHRCLHFRFPNSGKLEPWPLPEYQDLSL---PVS------MVCNNIETRQCFALQG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA LPD+ ++ LV +++D + S Y +P T KL+ F +F+ Sbjct: 231 LGIACLPDFSIRKELAGGQLVTVLDDYVKRSGDFYILWPSGGYMTPKLRVFIDFL 285 >gi|152988405|ref|YP_001347373.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963563|gb|ABR85588.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 306 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 142/289 (49%), Gaps = 12/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +F V SFT AA+ L + +S++SR+I+ LE +G++L R R L LTE G Sbjct: 4 DDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ H + + + PSG LRI + I+ GQ L G L +F+ YP I + Sbjct: 64 YYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLAGLLGDFMRQYPLITAE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D + D I + +P + S+L+ R+L+ A+P YL P S+ E Sbjct: 124 VELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLATGRWLCASPGYLAEHGTPGSVAE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + L+ + + W + D + +SC N+ + V G+GIA LP Sbjct: 183 LAGHRAV----LLSTDSQRY-WPLSGDSLPCQRVLSC---NNITFAREAVVAGAGIAALP 234 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I ++ N LVR++ DV P +Y YP K+KAF +F+ Sbjct: 235 ALICEESVRNGRLVRLLPDVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283 >gi|16330261|ref|NP_440989.1| transcriptional regulator [Synechocystis sp. PCC 6803] gi|1652750|dbj|BAA17669.1| transcriptional regulator [Synechocystis sp. PCC 6803] Length = 295 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 19/296 (6%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL Y V R GSF AA +++L +S++++ + LE E+ ++L +R R +T T Sbjct: 2 DKLESIYAFTQVVREGSFAAAARKMNLGRSTVNKMVIALENELKVQLLHRSTRKVTPTPT 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ LE ++ + + +P G LR+ + G + + +F+ L+ + Sbjct: 62 GIAFYEKSVQILADLEEAELSVSQLHGEPKGLLRVNAPMTFGTMYIAPLVAKFMALHSQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++QL L+++ +D + D IR+ +P++S+SLI + L + A+P YL P + Sbjct: 122 EVQLTLEDRFVDAIAEGYDLLIRIAQPLESASLICQPLFQTKLLLCASPEYLAVRGMPQA 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCVL 237 +++L +HN + +G + +L GE IS C L+I Sbjct: 182 LEDLQRHNCLLYG--YSSGGSQWQFLGQA----GEKVISVSGNFCSNNGEALAIA--VAQ 233 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIALLP +IV+ + + I+ D TV YP K+K F F+ Sbjct: 234 GLGIALLPQFIVQPYLEAGKMQIILPDYCLRELTVSLIYPVNRHLATKVKLFTEFL 289 >gi|332533075|ref|ZP_08408945.1| transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis ANT/505] gi|332037554|gb|EGI74007.1| transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis ANT/505] Length = 301 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 144/286 (50%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V + GSF+ AA++L +S +S+ IS LE + +L +R R +++TE G++ + Sbjct: 7 MKTFLAVVQEGSFSKAADKLDISPQLVSKYISALEDNLRTRLLHRTTRKVSVTEAGNQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V +E + L S SG L I+ + G L G L +F YP++++ L Sbjct: 67 QRCQQVIIDIEDMENSLNNLSESVSGVLSISAPMSFGTKHLAGLLVDFQKQYPNLKLDLR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D A+R+ +++S+LI +K+ IH+ +A+P YLK P ++ +L Sbjct: 127 LTDQYVDIVEQGIDIALRI-GVLKNSTLIAKKIAPIHLAVFASPDYLKRHGTPQTLLDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 HN + + P L V+ E ++ S N+ ++ + G GIA+ P Sbjct: 186 SHNYLRYSHSEPT-----KRLFGVNELKSELKLESNFVANNGDLLLNTAIAGGGIAMQPT 240 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +I + +VRI++D +Y Y K++AF +F Sbjct: 241 FIAGEALAQGKVVRILKDHEPEPMGLYMVYANRQFLPSKVRAFVDF 286 >gi|167841327|ref|ZP_02468011.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 324 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q + KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGNRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP+ I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPVEIAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D RP+ + VN + + V G G+ Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGRPVEVRMNGAVTVNDSDAYVTCGVEGFGMIQPTL 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP+ + K++ F ++I Sbjct: 244 FMVL--PHLLDGTLLEVLPGFNPKPKPISIVYPDNRHLSAKVRVFADWI 290 >gi|167737394|ref|ZP_02410168.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|217420235|ref|ZP_03451741.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|217397539|gb|EEC37555.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 294 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ LG +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LGAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + P+ + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPQ--SMICNNVETRVCFAIRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + L +++ I T + +P + KL+AF +FI Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288 >gi|207743951|ref|YP_002260343.1| hypothetical protein RSIPO_02134 [Ralstonia solanacearum IPO1609] gi|206595353|emb|CAQ62280.1| hypothetical protein RSIPO_02134 [Ralstonia solanacearum IPO1609] Length = 284 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 136/293 (46%), Gaps = 17/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V ++ F AAE + + S++SR+I LE +G++L +R R + LTE G Sbjct: 1 MALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQLYF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L E +PSG LR + +D L + EF LYP I Sbjct: 61 ERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFDFD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D AIR+ P + S LI R L ++ H YA+P YL EP +L+ Sbjct: 121 LTPRRVDLVSEPFDVAIRM-GPSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPADLE 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H ++ ++D ATV +G +NS I + VL GI L+P+ Sbjct: 180 RHECLSILKAGSWTLQDGKRTATVS--VG----GRFTLNSVGMIRRLAVLDLGIVLMPEE 233 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI-FLKAR 295 IV D + L RI+ VY A+ T L A + FI FL+AR Sbjct: 234 IVADELASGKLRRILPGWHGTPMPVY-----AITETRLLPAKTQRFIEFLRAR 281 >gi|86158636|ref|YP_465421.1| LysR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775147|gb|ABC81984.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 300 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 138/294 (46%), Gaps = 14/294 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++ VF V +GSFT AA L L +SS+SR ++ LE E+GI+L R R L+LT+ Sbjct: 1 MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEGELGIRLLQRTTRRLSLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + T + L E +P G +R+ +DL +L + FL +P + Sbjct: 61 GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPDLAR-LTDAFLRAHPQV 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ L + +D+ + D AIR + SSL+ RKL + +AAP YL+ P Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRA-GVLADSSLLARKLSDSALALFAAPSYLEARGRPRR 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 + +L +H+ + L E W T R GE +++ + + + + G+ Sbjct: 179 LADLARHDCL----LYRAGGETAVWRLTGRR--GEEQVTVRGRAAADEFAFVRGMLLAGA 232 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIAL+P +V + L R++ + V +P + FR+ I Sbjct: 233 GIALVPTGMVAAHLRTGALERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAI 286 >gi|119524024|gb|ABL77403.1| PtrA [Pseudomonas chlororaphis] Length = 301 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 9/273 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F V+ +GSFT AA+QL S+ +S++IS LE + + L R R L+LT G+ Sbjct: 2 DDLAAFAVLIEAGSFTLAAQQLGCSKGQLSKRISALEAQFSVVLLQRTTRRLSLTAAGAA 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E + L +G +R+ + LG+ +G L EF YP++QI+ Sbjct: 62 LLPQAQALLVQVERARQALARLKDDMAGPVRLTVPVSLGETFFEGLLLEFSRQYPEVQIE 121 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+N D++ D D AIR + L+ R L+ H A+P YL+ EP + ++ Sbjct: 122 LELNNNYRDLTRDGFDLAIR-SEVANDQRLVARPLLAWHEMTCASPAYLEQYGEPQTPRD 180 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +H + L WL + R+S N Y + + ++G+GIA L Sbjct: 181 LAEHRCL----LNSHYSGREEWLYHQQHELLRVRVSGPFASNHYNLLKKAALVGAGIARL 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P Y+++ + L ++ D T S +Y +P Sbjct: 237 PSYLLQAELADGRLRGLLRDYQTRSMPMYLVHP 269 >gi|149377206|ref|ZP_01894954.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] gi|149358505|gb|EDM46979.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] Length = 296 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 7/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++ F V SF A+E + +S++++SR + LE+ +G++L +R R L+LT +G Sbjct: 6 EMQTFCTVVDESSFVAASEAMGMSKAAVSRYVGELESRLGVRLLHRTTRRLSLTAEGEVF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +E + EL S G LRI + G L +F YP++++ + Sbjct: 66 YVRCRELLAGVEEAEAELTSRSGVAKGVLRINAPVSFGIRHLAPLWGQFHSEYPNVELNI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +DI + D AIR+ +++S+L+ R+L T + A+P YL P +L Sbjct: 126 DLSDRIVDIVEEGFDLAIRIAS-LRNSTLVSRRLTTTRLVVCASPEYLSAHGTPEHPGDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +I + +L F+ D P+ + N+ + V G G+ P Sbjct: 185 IHHKIIAYSNLATGNDWHFD---GPDGPLSTRIRPWMHANNGETCCAAAVAGQGVIHQPS 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V+D+ LV +M D + VY YP T K++A +F+ Sbjct: 242 FLVQDDLDAGRLVELMPDYRSDELGVYAVYPTRKFVTPKVRALVDFL 288 >gi|312959680|ref|ZP_07774197.1| regulatory protein [Pseudomonas fluorescens WH6] gi|311286397|gb|EFQ64961.1| regulatory protein [Pseudomonas fluorescens WH6] Length = 301 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 8/296 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + V+ V +GS T AA +S + + + LE +G+ L R R +LTE G Sbjct: 4 FQAMSVYVKVVETGSMTAAAYACGMSTTMVGNHLRALEQRLGVSLLKRTTRKQSLTEFGG 63 Query: 65 KLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ EV + ++ Q+ Q S P G LRI G L L EF YP I+ Sbjct: 64 QYYQRCLEVLGLVADSEQLAEQAHSDVPKGTLRITAPPAFGTERLAPALSEFSRRYPQIK 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++L N+ +D+ D AIRL + ++ SSLI R + + A+P YL P + Sbjct: 124 LYVVLGNERMDLVDSGFDAAIRLGE-LEPSSLIARPMQDYTITLCASPEYLARHGTPQTP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240 ++L +H+ + F D + L + GE P L +NS ++ Q V G G Sbjct: 183 EDLQQHDCLAFAYPSTDDWRDADKLWRMTDAAGEVEIPVSGSLTINSSQALRQVAVQGMG 242 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I +LPD +V+ + LV ++ PS ++ Y + KL+AF +F+ K Sbjct: 243 IVMLPDALVQPDLQSGKLVALLTHYQLPSRPMHLLYGQDRYRLPKLRAFVDFVMEK 298 >gi|304397953|ref|ZP_07379829.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304354664|gb|EFM19035.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 301 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 24/281 (8%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V +GSF+ AA +L S S S+ +S LE ++G++L R R L+ T+ G + Sbjct: 8 RMFVTVLETGSFSAAALRLGTSSSQASKLVSKLEQQLGVQLLKRSTRALSPTDVGRSYYE 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + E ++ES+ P+G+L+I+ G +L L F YP I++ + Sbjct: 68 RVKNLLDAFEALDASVRESATTPTGRLKISAPGSFGTAVLSQVLVAFARRYPLIELDVSF 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ ++I + D AIR+ + SSL+ RKL +H+ A+P YL+ P + + + Sbjct: 128 SDRAVNIVDEGFDMAIRIGT-LSDSSLVARKLSEVHVRIAASPVYLEQFGTPQHWRNMAQ 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYL------SIMQYCVLG 238 H +C+ D N+ P G I + V L + +Q + G Sbjct: 187 H----------QCIIDTNFRDPRHWPFTSGDGSSEIVTVPVRGRLRFANTEACLQAAIAG 236 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276 GIA LP +I +VR++E+ TP ++ YP A Sbjct: 237 LGIARLPGFIAAPALQRGEIVRLLENFETPPLGLFAVYPPA 277 >gi|269960324|ref|ZP_06174698.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834935|gb|EEZ89020.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 316 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 150/296 (50%), Gaps = 18/296 (6%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DK+R VF V GSF AAE L+LS+++IS+ I+ LE+ + L R R L +T+ Sbjct: 2 DKIRALTVFRRVVELGSFVAAAEDLNLSKAAISKNINELESYLKSPLINRTTRNLHITDN 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +V L + ESS G L+I+ + LG L + EF+ L+P++ Sbjct: 62 GQLYYQQVCQVLDALNNADRSVIESSHTLKGTLKISMPMSLGLIELNPIICEFMKLHPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I++++ ++ ID+ D AIR + +SSL RKL+ I A+P YL+ + S Sbjct: 122 SIEVVMSDEHIDLIEQGVDIAIRGGGELGNSSLRSRKLLDIRRVLCASPQYLEESQPFKS 181 Query: 183 IQELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +++ H L+++ ++ + + VD P S VNS L++ Q G Sbjct: 182 PRDVINHRLLSYSLSSTSRRWTFQNGSEVLEVDLP-----ASVYTVNSGLALTQAACAGH 236 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 G+ALLPD+ V+ P L ITP + +Y YP + + KL+AF +++ Sbjct: 237 GVALLPDFFVE--PQLASGELVEITPEWQMEKHALYIVYPYHKEQSQKLRAFIDYV 290 >gi|269104645|ref|ZP_06157341.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268161285|gb|EEZ39782.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 299 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 135/293 (46%), Gaps = 13/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F V +S SF+ AA L S S +S++++ LE +G++L R R L+LT +G Sbjct: 7 FDGIIIFVQVVKSESFSAAAHLLGHSSSHVSKEVNKLENRLGVRLLNRTTRSLSLTPEGE 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ E + P G LRI I LQ L E+ YP++ + Sbjct: 67 AYFEQCIQLIQGAEDAVSLITHHEASPRGTLRINCPIGFSHQHLQPILVEYAKRYPNVIL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L +K ID+ D D AIR + SSLI + + ++ A+P YL+ P Sbjct: 127 DLDLTDKRIDVIADGYDLAIRAAAQLDESSLICKAIYKSCIYTVASPDYLERKGRPYHPF 186 Query: 185 ELDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL KH+ I + +L + ++ N L VD PR+ N L++ + G G Sbjct: 187 ELTKHDCICYSNLKSPYRWEYIDKSNQLINVDV---RPRVKTNDGNIELAMT---LAGQG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP++ + DN L + ED+ VY YP + K++ F + I Sbjct: 241 ICRLPEFYIADNLKTGQLEILFEDLPETEVNVYLLYPSRKHLSPKVRCFIDLI 293 >gi|218676611|ref|YP_002395430.1| Transcriptional regulators, LysR family [Vibrio splendidus LGP32] gi|218324879|emb|CAV26637.1| Transcriptional regulators, LysR family [Vibrio splendidus LGP32] Length = 300 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/303 (25%), Positives = 153/303 (50%), Gaps = 12/303 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + VF V GSFTHAAE L++++S++SR++ LE +G++L R R L LT + Sbjct: 1 MDLNAVTVFTQVVDCGSFTHAAEALNMTKSTVSRKLDELEQHLGVRLITRSTRSLVLTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + ++ + ++E+ + G L + ++LG +L + FL +P++ Sbjct: 61 GERFYQSSMQMQEIMNQAELEVSANQDLIRGPLNVVLPVELGHQVLAQYIHSFLKEHPNV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L N+++DI + D ++ + + SSL+ R L T A+P YL+ E + Sbjct: 121 TMNLELTNREVDIIAEGIDLYAQIGELV-DSSLVSRYLTTSKRTLVASPEYLEQFGEIKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLG 238 +L +++ K W ++ GE + C L+VN+ + + CV G Sbjct: 180 PSDLKSP--FRMVEVVNKAARLPKWHLQLE--AGESILIDLPCQLRVNTITACLTACVDG 235 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+A+LP++I +++ L+R++ + P +V Y + + K F +++ + Sbjct: 236 LGLAVLPEFICREHFKTGKLIRLLPEYEMPEVSVSLVYADRQLMPKRKKVFIDYLLTAFQ 295 Query: 296 DWK 298 + K Sbjct: 296 NRK 298 >gi|212637173|ref|YP_002313698.1| regulatory protein LysR:LysR substrate-binding [Shewanella piezotolerans WP3] gi|212558657|gb|ACJ31111.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella piezotolerans WP3] Length = 303 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 143/294 (48%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + + +S+ISR+++ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAQGFSQAARETGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + ++E + ++ + SG LR+A + Q L+ F+ LYP+++ Sbjct: 63 ALFFQHCTSISDEIEAAKATIENTHNDVSGSLRVAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D+ + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPSYLKTHGTPANP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL H+ I G + P + R + +VNS + + Q + Sbjct: 182 QELATHSGILLGTSRSAPIWPLGKGTRKTMVNFKRKV--------RVNSAVMVKQLVMDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + + K+ + +LV I+++ +F VY Y + + F +F Sbjct: 234 FGIAMLSNSVCKNELASGSLVPILQEWPMEAFKVYGVYSSRRQLATNISVFLDF 287 >gi|296162833|ref|ZP_06845615.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295886929|gb|EFG66765.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 309 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 22/304 (7%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + + V + SGSF A L +SQS +SR ++ LE +GI+LF R R + Sbjct: 1 MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT++G + + + LE + + G+LR+ + +L L F+ Sbjct: 61 VLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+Q++LI ++ D+ D D AIR P S+LI RKL+ + AAP YLK Sbjct: 121 RHPDLQLELITRDQLGDMVADGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179 Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229 P++ +L+ KH I F D P FNW R P G L VN Sbjct: 180 GHPVNPADLESGKHVCIKFRD--PLTGYPFNWEFHRGRKKIVVTPQGR-----LTVNDVG 232 Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ C G G+A + + + + LV + D + +Y YP K++AF Sbjct: 233 TLHSACAAGQGVAQILELGAESLMASGKLVALFPDWSDEVYPLYALYPSRHHPPAKVRAF 292 Query: 287 RNFI 290 FI Sbjct: 293 FEFI 296 >gi|189352503|ref|YP_001948130.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189336525|dbj|BAG45594.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 300 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 136/277 (49%), Gaps = 7/277 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D++ L F VAR +FT AA Q+ +SQS++SR ++GLE +G++L R R ++LT Sbjct: 1 MKEDFNDLVGFMTVARERNFTRAAAQMGVSQSALSRTVAGLERRMGLQLLTRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + + ++E L+ + +PSG +RI TT ++ + L+ L YP Sbjct: 61 EAGDRLLSAIAPRFEEIEAEVDSLRAMTNQPSGTVRITTTDYAAKSYVWPRLQSLLRQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++I+L+ D DI D D +RL + + R + M +P YL++ Sbjct: 121 ELKIELVNDYGLSDIVADRYDIGVRLGDQVAKDMVAVRIAPDMTMTVVGSPSYLQSKPHA 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + Q+L HN I +P W R + R+ L N+ +++ + G Sbjct: 181 RTPQDLTLHNCINL--RLPTRESLLPWELRKGRRELKVRVEGQLTFNNVYQMVEAALGGF 238 Query: 240 GIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273 G+A +P +V+D R ++ED P+F + Y Sbjct: 239 GLAYVPKDLVEDKVRAGRLCWVLEDWY-PTFVGHHAY 274 >gi|86358885|ref|YP_470777.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282987|gb|ABC92050.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 341 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 134/276 (48%), Gaps = 17/276 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F A +G F+ AAE+LHL++S++S+ I+ LE +G++LF R R +LTE+G + Sbjct: 51 IFVQTAEAGGFSAAAERLHLTRSAVSKTIARLEQRLGVRLFNRTTRSQSLTEEGRFFYER 110 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + +L+ G+LR++ + G++ L L +PD+++ Sbjct: 111 CLRAIEEIRIGEAQLESGRRAVRGRLRVSMPVLFGRHCAAPILTRLLDDHPDLELDFSFS 170 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D D A+R + L+ R + M A+P YL+ P + EL H Sbjct: 171 DRVVDLLEDGFDLAVRNGPLKDNPDLMARAIARQSMTVCASPTYLEKYGVPQTFDELAHH 230 Query: 190 NLITF--GDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 I + GD D W+ +G PR S L+++ SI V G G+A Sbjct: 231 QGIIYRRGD------NDRAWI--FPSAVGPPREVLPKSRLRLDDLASIADAAVEGRGLAW 282 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 L ++V+D + LVR++ DV + F Y +P + Sbjct: 283 LTCWLVRDRVLSGELVRVLTDVPSNIFEAYAVWPRS 318 >gi|149911198|ref|ZP_01899822.1| transcriptional regulator, LysR family [Moritella sp. PE36] gi|149805725|gb|EDM65723.1| transcriptional regulator, LysR family [Moritella sp. PE36] Length = 296 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 147/295 (49%), Gaps = 10/295 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + WD ++ Y VA GS + A + L+++ +++ R+I+ LET + +KLF+RH RG LT+ Sbjct: 3 NISWDDYKIAYQVAIDGSLSQAGKSLNINHATVLRRINQLETALEVKLFFRHQRGYKLTD 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ L E+ + + +LQ K SG+LRI+T L LK F +YP Sbjct: 63 AGAILLAELPELIARFSKLEHQLQNVESKISGELRISTISSYSSQLAPA-LKAFRDIYPA 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+I+++ + + + A ++R+ + LI ++L + YA+ Y+K +P Sbjct: 122 IRIKVLSTDDIVPLESGAAHVSLRVGPKPNGADLIVKELTRFKTNYYASKEYVKEFGKPS 181 Query: 182 SIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + L+ H + +P + ++ V I + RI Q N + + Q + G G Sbjct: 182 TDSSLNDHYWV-----LPTAEKYRIPFVRHVVDNIDQDRI-VFQSNHFPDVNQAVIEGMG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 I + ++ K P+LV+I + ++F Y + K++ ++K F + FL AR Sbjct: 236 IGPMGEHQAKLYPSLVKIPLNSPKSEEAMWFVYHKDAKHSARVKCF--YEFLHAR 288 >gi|148260787|ref|YP_001234914.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402468|gb|ABQ30995.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5] Length = 295 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 118/261 (45%), Gaps = 8/261 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD++R+F VAR G AA QL L+ +++ RQ+S LE E+G KLF RH G TLT Sbjct: 1 MNWDRIRIFLAVARHGQILGAARQLRLNHATVGRQLSALEEELGAKLFERHTGGCTLTGA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L L ++ +G +R+ LG L L +P++ Sbjct: 61 GEALLLAAERAESDFLRVGTALAGTAEAVAGVVRVGAPDGLGNYFLARELGALAARHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD I L +P Q L+ RKL + YAA YL P+ Sbjct: 121 TIQLVPLPRTFSLSRREADLVITLERPKQ-GRLVVRKLTDYTLSVYAAASYLDR-HGPIR 178 Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 QE L H +T + + ++ AT+ R I C S + M+ G GI Sbjct: 179 RQEDLAGHLFVTHVEELAYS-RALDYAATLGR-IMRRHFEC---GSVVGQMEAVRAGHGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDV 262 +L DY P L R++ D+ Sbjct: 234 GILHDYAAIGFPELRRLVPDL 254 >gi|222147639|ref|YP_002548596.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221734627|gb|ACM35590.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 293 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 21/295 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F +AR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAIARTGQILAASKRLGLNHATLSRRLTALEDALKTRLFIRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + K +G +RI G L L + +P++ Sbjct: 61 GEVFLASAERMETEMLEAQARLGRTDAKVAGTVRIGAPDGFGVFFLASRLGGLIERHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD A+ L +P Q L+ L + YA+ Y++ P + Sbjct: 121 KIQLVPVPRSFSLSQREADIAVTLERPDQ-GRLVSAHLTDYSLALYASRQYIERHGLPET 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 ++ L H+ I + DLI +F NW A+ +++S + + Sbjct: 180 VEALKDHHRIGYVEDLIFTPSLNFTGEIMRNWNAS------------FEISSAIGQTEAV 227 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI +L YI + + +LVRI+ D IT + Y E+L++ +++ +++ Sbjct: 228 LAGAGIGILHSYIARQHRDLVRILPD-ITLHRAYWTTYHESLRDLARIRTVVDYL 281 >gi|239834604|ref|ZP_04682932.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239822667|gb|EEQ94236.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 304 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 8/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D R+F V SFT AA+ L + +SS+S + LE +G +L +R R ++ T+ G+ Sbjct: 5 DLFRIFARVVECSSFTRAADTLGVPRSSVSAAVLELEGRLGARLLHRTTRSVSTTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + L ++ PSG LRI +G+ ++ L EFL YP+I I Sbjct: 65 FYERCLSLIADMEEAE-NLFRNTATPSGTLRIDVPGRIGRLIIAPALPEFLDAYPEIDIH 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ P+ S LI R L + + A+P YL+ P + + Sbjct: 124 LGVTDRAVNLVEESVDCVLRV-GPLTDSGLIARSLGELPLINVASPAYLERYGIPETPHD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H I + +E + W A R I P + VNS + + C+ G G+ + Sbjct: 183 LSAHWAINYASPSSGRVEPWEWSEAGATRSI--PVRGRVTVNSAEAYIACCLAGLGLIQI 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V+ + L+ +M D+ + F Y + +L+ F +++ Sbjct: 241 PAYDVRRHLEAGELIEVMADMRAAPMRMTFLYSHRQHLSRRLQVFADWL 289 >gi|160895812|ref|YP_001561394.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361396|gb|ABX33009.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 307 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 13/272 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A +GSF AAE+L L++S++ + ++ LE +G +LF R R L LTE G + Sbjct: 14 AFVASAEAGSFAQAAERLGLTRSAVGKAVARLEERLGARLFVRTTRSLGLTEDGQMFYER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L+ + L+ + G+LRI+ + G++ + L E L+P ++I+ Sbjct: 74 CAQALEDLDAARHMLEAGRREVVGRLRISAPVVFGRHHVAPLLLELAQLHPRLRIEASFT 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D + D D AIR + S L+ R+L M A+P YL+ P S+ +L H Sbjct: 134 DRQLDFADDGIDLAIRSGELPDSDWLVARRLGMQTMVLCASPAYLQAHGAPRSVADLAGH 193 Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 I + G P WLA D + P + L + +I + G+G+A +P Sbjct: 194 RCIAYMRSGRAAPW------WLAGEDGSLAAPVLEPALGFDDIETIATATLQGAGLAHMP 247 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + V+ D+ LVR++ DV ++ +P Sbjct: 248 LWRVRSALDSGALVRLLPDVPAARIPLHVLWP 279 >gi|313202348|ref|YP_004041006.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gi|312441664|gb|ADQ85770.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 301 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 147/297 (49%), Gaps = 18/297 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F VA+ SF+ AA +L +S+S++S+ ++ LET +G +L R R L+LTE G Sbjct: 3 DLNLMAIFAHVAQEQSFSTAARKLGMSRSAVSKAVAKLETALGARLLNRSTRHLSLTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + E ++ + KPSG LR+A ++ G + + +FL YP+++ Sbjct: 63 AGMLEHCARIVTESERASQVVENLNSKPSGTLRVAASVAFGTLHVAPAMADFLQQYPEVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + ++ ID+ + D I++ + S+L+ RKL + P Y + P S Sbjct: 123 LDITITDRAIDMVEEGYDVIIKVAQE-PPSALVARKLAPVRRQVCGTPAYFRQHGLPASP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L HN + D I + + + D I P +++N ++ Q + G G+AL Sbjct: 182 MALTAHNCL---DYIHSGDKGYWRFSGPDGEIAVPVSGRVRINDDEALSQVVLGGFGLAL 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP +IV + + +L ++ D I VY Y L N F+ LKAR + Sbjct: 239 LPTFIVGNHLQSGHLQSVLSDYIPVEQHVYAMY---LPN--------RFLPLKARTF 284 >gi|294141696|ref|YP_003557674.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293328165|dbj|BAJ02896.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 303 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 16/294 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V +GS + A+ + SSISRQ+ LE ++GI+L R+ R + LTE G Sbjct: 6 RLHYFNCVVETGSISKASRVFDIQPSSISRQLMALEKDLGIRLLNRNTRNIGLTEAGLTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + +L+ + E P G L+++ T+ G++ + + F+ YP++ I+L Sbjct: 66 YQYSQRIVSELDEAHRAVNELQKNPKGHLKVSMTVGFGESCVLPLISAFIRQYPEVNIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + ID+ + D AIR + S+LI RKL + ++P Y+ +PLS +L Sbjct: 126 ELTERVIDMVEENVDIAIR-SGHLPDSNLIARKLTDNNFLICSSPQYITQHGQPLSANDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 + + I +G + WL P +++ L VNS Q + +G AL Sbjct: 185 HEFDCIKYGYAGWR-----EWLVMTSAPHAFKKLTISEGLTVNSVNGQKQLMLNDAGFAL 239 Query: 244 LPDYIVKD---NPNLVRIM-EDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290 +P + VK+ N +LV+I+ +D +P + Y Y + + K++ F +FI Sbjct: 240 IPLWAVKEELKNGSLVQILAQDTFSPCAPLSSTYALYQKRELISPKIRVFLDFI 293 >gi|260776407|ref|ZP_05885302.1| putative transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260607630|gb|EEX33895.1| putative transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 266 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 9/245 (3%) Query: 32 SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91 ++I+R+I LE + ++L RHAR L+LTE G + + S + ++L + E+ + Sbjct: 5 ATITRRIQALEEALNLRLLNRHARKLSLTEAGERFYNECSPLLNRLTSAAEEITDECRGA 64 Query: 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151 +GK+RI+ +L + + L EF+ YPDI I+L N + D R+ P + Sbjct: 65 AGKIRISAPSNLTKRRMMPMLNEFMKHYPDINIELTTSNHADQLDPTEWDVIFRV-GPQR 123 Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211 SSLI RK+ ++ A+P YLKN P ++L H+L+ L+ + + N V Sbjct: 124 DSSLIARKISSVEDILVASPEYLKNNPTPKHAEDLHNHSLLKGAPLLKWQLTNSNGETVV 183 Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT 268 + G + S L V + C G GI L+PD ++K ++ +L R++ED Sbjct: 184 NNDKGRFQASTLDV-----VRSACSNGLGITLMPDAMLKKYIEDGSLTRVLEDWSANPRD 238 Query: 269 VYFCY 273 +Y Y Sbjct: 239 IYMLY 243 >gi|261379509|ref|ZP_05984082.1| transcriptional regulator, LysR family [Neisseria subflava NJ9703] gi|284797972|gb|EFC53319.1| transcriptional regulator, LysR family [Neisseria subflava NJ9703] Length = 296 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 139/290 (47%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SGSFT AA+QL +S + S+ +S LE + KL +R++R L LTE G + + Sbjct: 7 LKVFRQVVQSGSFTRAADQLGISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+T + + P G LR+ + + L E+ YP + + L+ Sbjct: 67 RQCSYALDTLDTAAQKAAGGTDTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ ID+ + D A+R+ K S SLI + L I AAP YL P + + + Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPESVM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 +H I +P NW T R GE I ++ ++ L I + G+GI Sbjct: 186 QHQAI-----LPSYTSQQNWEIT-HRITGEKAILHLSPVIRSDNTLMIRELIKAGAGIGY 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + V+ L++++ D + + Y + + K+++F +F+ Sbjct: 240 QPLWAVQQELKEGTLIQLLPDYTIWTDQLNATYVDRAFLSAKVRSFIDFL 289 >gi|167586820|ref|ZP_02379208.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 300 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFVAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRVINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWSFLEDGKVVSIRVSGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V D+ LV +++ P ++ +P+ Sbjct: 242 WWEVGDDVAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|254254764|ref|ZP_04948081.1| regulatory protein LysR [Burkholderia dolosa AUO158] gi|124899409|gb|EAY71252.1| regulatory protein LysR [Burkholderia dolosa AUO158] Length = 359 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 11/296 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF AA++L + +SS+SR + LE + +LF R R ++LT +G + Sbjct: 53 TFLAVVTEGSFARAADRLGVGRSSVSRHVQKLEDRLDARLFQRTTRSMSLTREGELFYEN 112 Query: 70 TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 L +++E S PSG LRI +T G+ ++ L++F YPDI ++L+L Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKIIAPLLRDFHAQYPDITLELLL 172 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ D S D D A R + ++ S+++ R+L+ + M A+P Y + P + EL + Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAQRYGLPRHVDELAQ 231 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247 H I + E W +D + +++ + + ++ VL G GIA LP Y Sbjct: 232 HRCINLRTASGRVTE---WEFKIDGLAQQRQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 288 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 V D + LV + Y CY +++ F +++ +ARD + Sbjct: 289 QVCDLLADGKLVSCLGQYAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 344 >gi|288961787|ref|YP_003452097.1| transcriptional regulator [Azospirillum sp. B510] gi|288914067|dbj|BAI75553.1| transcriptional regulator [Azospirillum sp. B510] Length = 299 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 139/292 (47%), Gaps = 23/292 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63 WD + F VA SGSF+ AAE+L +S S +SR ++ LE + +LFYR R ++LTE G Sbjct: 4 WDGIDEFVAVAESGSFSRAAERLRVSSSHVSRAVARLEDRLQARLFYRTTRKVSLTESGR 63 Query: 64 ------SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +L + + + Q +S VK G LR+ G+ + + + + Sbjct: 64 AFLDRCQRLAEQRDDAFLAVGALQGG-GDSEVK--GLLRMTCATAYGEQFVMPLINDLME 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P + I++ L N+ +D+ + D AIRL + + SSL+ ++ MH AAP YL+ Sbjct: 121 CHPQLSIEVELTNRQLDLVQEGYDLAIRLGR-LSESSLVATRIAPRAMHLCAAPAYLERH 179 Query: 178 REPLSIQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P S+ L H LI D + D N + RP G R NS S++ + Sbjct: 180 GVPDSLASLATHQCLIGTSD---HWLFDDNGTDWLFRPRGRWR-----CNSGFSVLDAAL 231 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G G+ LPDY V+ LV +++ P+ V+ YP+ K+ A Sbjct: 232 RGFGLCQLPDYYVRGPVAEGRLVSLLDRHQPPNTAVWAVYPQKRHVPAKVHA 283 >gi|270264875|ref|ZP_06193139.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041173|gb|EFA14273.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 306 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 144/278 (51%), Gaps = 16/278 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F ++ GSF+ AAE ++ S +S++I LE +G +L YR R LTLTE G Sbjct: 9 NDLILFALIVDCGSFSKAAETAGVTSSVVSKRIGRLEKSLGARLLYRTTRSLTLTESGLA 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ ++ K++ + E S + +G +R++ G+ LL ++ EF +P+++++ Sbjct: 69 LYQQAKDIGMKVQDALYAVSEKSEELTGTVRMSVPTISGELLLSESVAEFCAQHPNLKVE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ +D+ + D AIR + SSLI R ++ +P YL+ +P S + Sbjct: 129 MRLENRFVDLVEEGVDLAIR-TGTLPDSSLIARPILDSRWVIVCSPGYLERHPQPQSAAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L +HN +T+ + D NWL + +P G I LQVN LS I + + G Sbjct: 188 LLEHNCLTY--TYQESGTD-NWL--MKQPGGND-IYELQVNGNLSANNARAIRKAVIGGY 241 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA++P +V + + LV I+ VY YP Sbjct: 242 GIAMVPRCMVYEDLQDGKLVEILAGHCAKVLGVYAVYP 279 >gi|254473674|ref|ZP_05087070.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211957386|gb|EEA92590.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 298 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 15/291 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + +F VA +GS + AA+QL+ SQ +I RQ+ +E E+G+ LFYRH RGL LTE G Sbjct: 10 WDLIGIFVAVAETGSLSAAAKQLNQSQPTIGRQVKAIEAELGVSLFYRHQRGLGLTEDGE 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L + Q L K S G +R+ + + ++ + EF YP+ Sbjct: 70 AL--LPHAKAMHAAAAQFLLHAEERKQSGFAGSVRVTASQVISNYVMPKLIAEFRQTYPE 127 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQI L+ + ++ AD A+R+ P Q ++ +K+ + +A+ +L+ P Sbjct: 128 IQIDLVPSDDAQNLLFQEADIAVRMFTPTQ-LDIVAKKIGETPLGLFASKAFLERVGMPK 186 Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ++L + I + DLI + M++ VDR R C +Y +++ G Sbjct: 187 TREDLFALDWIGYDRSDLILRGMQEAG--LKVDRNFFSVR--CDDRVTYWELVRA---GC 239 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ L I ++ +LVR+ D P+ V+ P LK ++K +F+ Sbjct: 240 GVGLGQIGIGVEDDSLVRLELDDPLPALPVWLASPHTLKQIPRIKLLFDFL 290 >gi|158421907|ref|YP_001523199.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158328796|dbj|BAF86281.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 319 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 129/263 (49%), Gaps = 16/263 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V +G F+ AA LHL+ S++S+ I+ LE +G +L R+ R L LT +G+ Sbjct: 11 EMEVFVRVVDAGGFSAAARALHLTPSAVSKLITRLELRLGARLINRNTRRLQLTAEGAAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + LE + + S V PSG+LR+ + G L L EFL YP + + + Sbjct: 71 YERAVTLLADLEEAERSVARSEV-PSGRLRVNANVPFGTLYLLPALPEFLARYPAVTLDV 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L +K +D+ + D A+R P++SS L+ RKL M A+P YL P +L Sbjct: 130 VLTDKVVDLMEERMDVAVRA-GPLKSSQLVARKLGDTRMVIVASPEYLARHGTPRGPADL 188 Query: 187 DKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 D H I F L P E+ ATV RP G + + ++ + G+GI Sbjct: 189 DAHRCIGFCYLRQVEGWPLKAEEGRE-ATVFRPQGH-----VLASDGETLRHMVLAGTGI 242 Query: 242 ALLPDYIVKDN---PNLVRIMED 261 A L + V + LV ++ED Sbjct: 243 ARLGTFHVAADLLAGRLVPLLED 265 >gi|115360820|ref|YP_777957.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286148|gb|ABI91623.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 294 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLAAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRQGTPDT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +L H + +G W +D G R +Q N+ + + G Sbjct: 180 PADLAAHTCLLYGR-----ERRVGWEFRID---GAARTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP +IV D+ LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|291037290|ref|ZP_06568254.1| transcriptional regulator [Gluconacetobacter xylinus NBRC 3288] Length = 298 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L + +A +GSFT AAE L L +S++SR+++ LE + LF R R L+LT++G + Sbjct: 6 DDLALLVTIAEAGSFTAAAEALGLPKSTVSRRLADLELLLRTSLFRRSTRALSLTDEGRR 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + E +G++ + TT LGQ L+ +L YPD+++ Sbjct: 66 IYEMAQPSILAAGNAARAIAEREQLVAGRVSLTTTAALGQYLIAPHLVRLTADYPDLKVD 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + I+I + D A+R+ + S LI R+L + A+P YL PLS + Sbjct: 126 LQLTERRINIIGESVDLAVRMGN-LGDSDLIARRLCMVRRLLVASPAYLAQAGTPLSPLD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HN I + D W + I + L Q LG GIA+LP Sbjct: 185 LAAHNAIVTSAGLDTWRFDGGWECVMRWNIA--------AGNMLVAHQLARLGHGIAMLP 236 Query: 246 DYIVKDN 252 D+++ ++ Sbjct: 237 DFMIAND 243 >gi|157377100|ref|YP_001475700.1| LysR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319474|gb|ABV38572.1| transcriptional regulator, LysR family [Shewanella sediminis HAW-EB3] Length = 303 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 146/296 (49%), Gaps = 21/296 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA ++ + +S+ISR+++ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + + ++E + ++ + SG LRIA + Q ++ F+ LYP+++ Sbjct: 63 ALFYQHCTSISDEIEAAKATIENTHNDVSGSLRIAIPVSFSQEIIANLCSSFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + ++ + + D AI+ P+QSS L+ R L A+P YLKN P + Sbjct: 123 LDVQFTDSEVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKNNGTPATP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCV 236 Q+L H+ I G + W P+G+ + +VNS + + Q Sbjct: 182 QDLMNHSGILLGTSRSAPI----W------PLGKGARKTMVNFKRKVRVNSAVMVKQLVQ 231 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + + K+ + LV I+++ +F VY Y + + F +F Sbjct: 232 DDFGIAMLSNSVCKNELASGALVPILQEWPIEAFKVYGVYSSRRQLATNISVFLDF 287 >gi|254300213|ref|ZP_04967659.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157810202|gb|EDO87372.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] Length = 299 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ G GIA Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270 >gi|330831408|ref|YP_004394360.1| LysR family transcriptional regulator [Aeromonas veronii B565] gi|328806544|gb|AEB51743.1| Transcriptional regulator, LysR family [Aeromonas veronii B565] Length = 300 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 17/297 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + + GSFT AA +L ++++ +SR+I+ LE +G++L YR R LTLTE+ Sbjct: 1 MDLNAALILVRIVDKGSFTGAARELGMTKAMVSRRIAELEQRLGVRLLYRSTRQLTLTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G K + S+ L ++ L S + +G L++A I+ GQ ++ + +FL YP + Sbjct: 61 GEKYYLHCSKAVDALTEAELMLSASQQEVTGTLKLAVPIETGQLVVGRLVAKFLQAYPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181 Q++L L N+ +D + D +R+ + S+L R+L + A+P YL R P+ Sbjct: 121 QVELELTNRVVDPISEGLDALVRI-GDMSDSNLAARRLWSTGRLLCASPDYL--ARSPVI 177 Query: 182 -SIQELDKHNLITF--GDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++L H +T G L C E VD P S +VN+ + Sbjct: 178 ERPEDLANHERVTVSSGFLASHWCFELDGREVLVDPP------SRFRVNNITCAREAAKA 231 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+A LP + +D + LV ++ + P +Y +PE KL+AF +F+ Sbjct: 232 GLGLASLPAMLCQDELASGELVILLPEWQQPRVPIYLLFPERQLMPRKLRAFIDFMI 288 >gi|330890318|gb|EGH22979.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 303 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + + +F V RSGSF AA L + +++SR++ LE ++G +L +R R L LT Sbjct: 1 MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G H L +L +P G+LRIA D + +FL YP Sbjct: 61 QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S+Q L H ++ P + L D + E +++ N+ ++ + + G Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ + LV ++ S ++ YP + AF + K R Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296 Query: 296 DWKF 299 D F Sbjct: 297 DKAF 300 >gi|239992908|ref|ZP_04713432.1| putative transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 292 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 133/284 (46%), Gaps = 13/284 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA G+FT AA +L S + ISR+++ LE ++G+KL R R ++LTE G++ + Sbjct: 10 FCAVADVGNFTGAANKLDTSVAQISRKVASLEKQLGVKLLQRTTRSVSLTEAGTQYFQQA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 LE Q+ + P G +++ + G+ + L F+ Y I +Q N Sbjct: 70 MPALKALEDAQLAVSALQASPQGLIKLTAPVAFGEAFIAPLLNTFMQKYAGISVQCTFSN 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +DI D AIR+ K ++ S+L+ +KL T H+ + Y K +P SI+EL +H+ Sbjct: 130 EKLDIVELGLDLAIRIGK-LEDSTLVAKKLATRHLFVCGSRDYFKEQGQPKSIEELKEHS 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 L+ W +D I P ++ NS ++ V G GIA LP + V Sbjct: 189 LLVGSQPY--------WRLLIDNKIQSIPVQGRVRYNSGNALCSAAVAGLGIAQLPGFYV 240 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + L+ + + ++ +P K++ +F+ Sbjct: 241 RKALASGQLIELFPEYKDKQEAIWAVFPSNRNVAPKIRLLVDFL 284 >gi|227823576|ref|YP_002827549.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] gi|227342578|gb|ACP26796.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 314 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 140/293 (47%), Gaps = 14/293 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +F WD L+ F VAR+G + AA +L S +++SR+I LE + +KLF R+ RG LT Sbjct: 4 NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTA 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + E Q ++ + G +R++T G L L EF YP+ Sbjct: 64 MGQRFVETAERIERETEQLQFDISDGMTAQRGVVRLSTLEGFGNFFLSDRLAEFAGRYPN 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ + + +S AD A+ L P ++ L +H Y A YL + Sbjct: 124 ISLELVAIQQIMSLSRKEADIAVALAAP-KAGPYHSEVLTPYTLHVYGARSYLARHSKIR 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLG 238 + +L H + + +ED + +D +GE P + Q +S L+ ++ G Sbjct: 183 TRNDLSSHRFVGY-------IEDMIFTPGLDY-LGEIQPGLRAHFQSSSILTQLKAARQG 234 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290 G+ +LP ++ KD NL ++ + I T + C+ + + +++A R+F+ Sbjct: 235 LGLCVLPYFMAKDETNLEIVLPEEIELKRTYWLICHRDQMA-MPRVRAVRDFL 286 >gi|167575001|ref|ZP_02367875.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 303 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 139/291 (47%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VVA +G F+ AA QL + SS++R + LE +G+ L R R +TLT+ G+ Sbjct: 7 LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ +P G LR++ + + +L +L FL YP + + L+ Sbjct: 67 DQIGALLSQLVEADESVADAGSEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D D A+R+ P Q L+ R+L+ A+ YL P+ +L Sbjct: 127 VSDAYLDLATDRIDVAVRIGAPAQDPGLVVRRLMENRRIVVASHDYLDTMGTPVEPGDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 H + F P +W + D + ++ + L I++ VL G GIAL+P Sbjct: 187 SHRCLRF----PYRQGRQSWTFSRDGQSDKVEVNGRLTANSLDILRESVLSGQGIALVPT 242 Query: 247 YIVKDNPNLVRIM----EDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ R++ +TP VY Y +++ K++ F F+ Sbjct: 243 WLVHDDVAAGRMLPLFESWCVTPPGGGAQVYAAYLPNRRHSRKVQTFIAFL 293 >gi|149910250|ref|ZP_01898895.1| hypothetical transcriptional regulator [Moritella sp. PE36] gi|149806719|gb|EDM66684.1| hypothetical transcriptional regulator [Moritella sp. PE36] Length = 303 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 1/194 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF+ A L+++ SS++R I LE+E+G+ LF R R L LTE G + Sbjct: 5 IRVFIKVVELGSFSKTASVLNMAPSSVARNIDSLESELGVTLFKRSTRQLLLTEDGQQFC 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + +Q+ + +P G L+I+ G+ + L EFL YP ++I++ Sbjct: 65 ERAEKLLADADDLVSSMQQVNQEPEGVLKISAFESFGRQCISPLLPEFLARYPKVKIEIE 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ ID++ + D IR+ +P S+L R L T H A+P YL P + +L Sbjct: 125 LDNQVIDLNGENVDLGIRIGRP-SDSNLRARMLFTNHTILCASPEYLAKFGMPKAPADLS 183 Query: 188 KHNLITFGDLIPKC 201 +HN +T + +C Sbjct: 184 EHNCLTLANSRQRC 197 >gi|294140060|ref|YP_003556038.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293326529|dbj|BAJ01260.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 302 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 148/292 (50%), Gaps = 14/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA + SF AA +L+++ SS+SRQI+ LE+++ + LF R R + L+ G L+ Sbjct: 8 LRSFMAVAEANSFAKAARKLNMANSSVSRQIAQLESQLNVSLFTRTTRHVQLSPAGEILY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + ++E EL +V P G L+++ Q L L EFL LYPD+++ + Sbjct: 68 GRASGLIMEMENLAAELSAENVTPHGTLKVSVPWWFSQLHLAPLLPEFLALYPDLRVVMQ 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ + + D A+RL + ++ S+LI R+L A+P YL E + ++L Sbjct: 128 CDDGMTKLVEEGFDVAVRLSR-LKDSNLIARRLGPHSFAMAASPEYLARHAEVIKPEDLR 186 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 +H +++F P +W L + P + ++ I++ C L G+GI + P Sbjct: 187 EHAMLSFNFSTPY----HSWTLRKQGKSYRIPLKDSVLTSNNADILKQCALDGAGIIIQP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFI 290 + ++ ++ L++++ D S T ++ Y + K ++K F +F+ Sbjct: 243 VWGIQAEIESGALIQLLPDFEVTSTTFDNGIFAVYSKESKAVNRVKVFVDFL 294 >gi|167564938|ref|ZP_02357854.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] gi|167572144|ref|ZP_02365018.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 334 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E T+ Q ++ KP GKLR+ +G+ ++ +L EF +PDI +QL Sbjct: 67 ERCVRILADVEETEASFQTNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRFPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+P YL EP +I+ L Sbjct: 127 LSDRPVDLLQEGIDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLDKYGEPQTIEALA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246 +H + + + +W +D E +++ L VN + + + G G+ P Sbjct: 186 QHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFGLIQPPL 243 Query: 247 YIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V +D L ++ + YP + + K++ F ++I Sbjct: 244 FMVLPQLRDG-TLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWI 290 >gi|296156335|ref|ZP_06839174.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295893841|gb|EFG73620.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 303 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 142/300 (47%), Gaps = 16/300 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D F +A SGS T AA +L LS +++S+ ++ +E+ G+ L R R ++LT Sbjct: 4 SIQPDDFAFFSTLAASGSLTAAARELGLSTAAVSKHLAQMESRAGVSLVNRTTRRMSLTP 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G + + ++ L S P G LR+ T+ G++ + + F+ +P+ Sbjct: 64 EGDLYLTRARRILNDMDDLAQLLGGSQAAPKGLLRVNATLGFGRSHVAPLISTFVRRFPE 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + +QL L +S D D +R +P + +I R++ + A+P YL R P Sbjct: 124 VDVQLQLSVDPPPLSDDAFDVCVRFGEP-PDARVIARRVASNRRLLCASPRYLAQRRAPR 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQY 234 S EL +HN I I + + + W T R E + ++V L+ +++ Sbjct: 183 SPAELAQHNCIG----IRQGGDGYGLWRLTSGRGAAE-KTETVRVRGNLTTNDGEIAVKW 237 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + G GI + ++ + + + LV +M D TP +Y YP+ L+ T ++KAF + + Sbjct: 238 ALDGHGILMRAEWDIAEYLADGRLVHVMPDYRTPGADIYAVYPQQLQMTARVKAFVDMLI 297 >gi|271502124|ref|YP_003335150.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270345679|gb|ACZ78444.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 298 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 138/289 (47%), Gaps = 18/289 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA Q +++SS+S ++S LE +G++LF R R L LT G + Sbjct: 8 MALFALVAECGSFTEAARQAGMAKSSLSLRVSQLEQSLGLRLFNRTTRKLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E ++ +Q KPSG+LRI + LG LL EF +P + ++++ Sbjct: 68 VHCQEMRQASERAEMAMQHLRDKPSGRLRITSPAGLGATLLARLTVEFQSRFPAVSLEIV 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ + D A+R KP Q SSLI R L + + A+ YL +EL Sbjct: 128 VADRVIDLVEEGFDAALRTGKP-QDSSLIGRSLGQVPHYLVASYAYLAALPPITHPRELQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQYCVLG-SGIAL 243 H +C+ W R E R+ + L + CVL GI L Sbjct: 187 AH----------RCIAHRAWPEWGFRREAEYFLWRLPQSHITDNLLYARACVLADGGITL 236 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LP ++ + D+ LV ++ + + +Y YP N+ L +F +F Sbjct: 237 LPAFLCREQIDSGELVCLLSEWQADTNDLYLIYPGRKLNSPALNSFIDF 285 >gi|300719065|ref|YP_003743868.1| LysR family transcriptional regulator [Erwinia billingiae Eb661] gi|299064901|emb|CAX62021.1| LysR family transcriptional regulator [Erwinia billingiae Eb661] Length = 305 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA +GSF AAE L L S+++ I LE + ++L R R + LT +G + Sbjct: 7 MQVFIRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLQVRLLNRTTRRVRLTPEGLQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E T+ L +S +P G+LRI + ++ NLK+F LYPDI + + Sbjct: 67 AQCREILSLIEHTESSLTDSVRRPQGRLRIDMPGGIAHFIVMPNLKDFYRLYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR + + S+L+ R L A+P YL+ P + + L Sbjct: 127 VSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWVTCASPDYLREYGIPETPEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H I + + + + + + P VN ++ C+ G G+A L + Sbjct: 186 QHRAIHYFSGSGRRTNELRFRRGTEM-LSVPVEGDAAVNETGLYIRLCLEGFGLAQLAEN 244 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ +N LV ++ D PS V YP + ++AF +++ Sbjct: 245 VISENLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290 >gi|289627046|ref|ZP_06460000.1| LysR protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646298|ref|ZP_06477641.1| LysR protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298486983|ref|ZP_07005036.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158545|gb|EFH99612.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866782|gb|EGH01491.1| LysR protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 311 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 143/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +++ P G+LR+ LL L F YPDIQI Sbjct: 64 AYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPSPFASMLLMPALPGFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + I SLI R++ + + YAAP+YL P+ + Sbjct: 124 DMGVSDRIVDMIGENVDCVVRGGE-ITDQSLIARRVGDLQLGVYAAPYYLTRMGTPVHPR 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ + +P M V G ++ N+Y++ + Sbjct: 183 ELEDSAHRIVGYLWARTSKALPYAMHRDGEKVHVQ---GRYALAVDDGNAYIAA---GLA 236 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ + + +L+ + +D S +Y +P + K++ F ++I Sbjct: 237 GMGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292 >gi|254000391|ref|YP_003052454.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253987070|gb|ACT51927.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4] Length = 301 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 148/297 (49%), Gaps = 18/297 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F VA+ SF+ AA +L +S+S++S+ ++ LET +G +L R R L+LTE G Sbjct: 3 DLNLMAIFAHVAQEQSFSTAARKLGMSRSAVSKAVAKLETALGARLLNRSTRHLSLTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + E ++ + KPSG LR+A ++ G + + +FL YP+++ Sbjct: 63 AGMLEHCARIVTESERASQVVENLNSKPSGTLRVAASVAFGTLHVAPAMADFLQQYPEVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + ++ ID++ + D I++ + S+L+ RKL + P Y + P S Sbjct: 123 LDMTITDRAIDMAEEGYDVIIKVAQE-PPSALVARKLAPVRRQVCGTPAYFRQHGLPTSP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L HN + D I + + + + I P +++N ++ Q + G G+AL Sbjct: 182 MALTAHNCL---DYIHSGDKGYWRFSGPEGEIAVPVSGRVRINDDEALSQVVLGGFGLAL 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP +IV + + +L ++ D I VY Y L N F+ LKAR + Sbjct: 239 LPTFIVGNHLQSGHLQSVLSDYIPVEQHVYAMY---LPN--------RFLPLKARTF 284 >gi|306846367|ref|ZP_07478918.1| LysR family transcriptional regulator [Brucella sp. BO1] gi|306273210|gb|EFM55101.1| LysR family transcriptional regulator [Brucella sp. BO1] Length = 297 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +P+G +R++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKSGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T + + RI+ L S ++Q C+ G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSQHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|167718264|ref|ZP_02401500.1| LysR family transcriptional regulator [Burkholderia pseudomallei DM98] Length = 298 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q S +PSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGSRRPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + V G G+ Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 ++V P+L+ + P F + YP + + K++ F ++I Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290 >gi|76819501|ref|YP_337608.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|126456556|ref|YP_001075227.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167742167|ref|ZP_02414941.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167819345|ref|ZP_02451025.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167849191|ref|ZP_02474699.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167897789|ref|ZP_02485191.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167906134|ref|ZP_02493339.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167914456|ref|ZP_02501547.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167922355|ref|ZP_02509446.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|242311132|ref|ZP_04810149.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254189944|ref|ZP_04896453.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254262347|ref|ZP_04953212.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|76583974|gb|ABA53448.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] gi|126230324|gb|ABN93737.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|157937621|gb|EDO93291.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|242134371|gb|EES20774.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254213349|gb|EET02734.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 299 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ G GIA Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270 >gi|220919812|ref|YP_002495115.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] gi|219952232|gb|ACL62623.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 298 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 144/292 (49%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ L F +AR G AA +L + +++SR+I+ LE + +LF R + G LTE Sbjct: 2 FDWNDLTFFLELARHGRLMPAARRLKVDHTTVSRRIAELERNLDSRLFQRCSGGFVLTEA 61 Query: 63 GSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G KL + + K+ + + LQE+ + G++R+AT + L EF P Sbjct: 62 GHKLFVIAEAIEQKMLSVPEALGLQEAG-QLLGRVRVATMEGIAAFYLAAKFSEFAASMP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L+ + I+++ AD ++ P Q L+ R++ + +A+ YL P Sbjct: 121 GVVVELVTERHLINLTKREADISVSFVPP-QGPRLLVRRVGEFRLALFASERYLARRGRP 179 Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-G 238 + +L H+ + + DL+ +E +WL V P + + ++ ++ Q V G Sbjct: 180 ATRADLQDHDFVDYVEDLV--AIEPVHWLLEVLTP-----SNVVFRSTSMAAQQTAVASG 232 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +G+ALLP + K NP L+ ++ + + +Y E ++ G+++A F+ Sbjct: 233 AGMALLPLFSAKTNPALIPVLPNEVVVRRDLYLGVHEDIEYVGRVRAVTRFL 284 >gi|148548512|ref|YP_001268614.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148512570|gb|ABQ79430.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 313 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 147/297 (49%), Gaps = 12/297 (4%) Query: 4 DWDKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 D D L F V VA + SF A++ L +S S++ ++++ LE+ +G++LF+R R +TLT Sbjct: 15 DMDSLSGFVVFNRVAETRSFVAASQSLGISASAVGKRVARLESRLGVRLFHRSTRSITLT 74 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G+ + + ++E T+ EL ++S P G+LR+ ++ L+ L EF+ LYP Sbjct: 75 AEGTMFLERSRRILAEIEATEQELSQASETPRGRLRV--SMPQVTRLVMPALAEFMALYP 132 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ L ++ +DI + D +R +P+ S L + L A+P YL+ P Sbjct: 133 QVELDLDFSDRMVDIVGEGFDVVMRGGQPVD-SRLSAKFLGHFQHRLVASPEYLRERGTP 191 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGS 239 L ++L H + + P + W + P I V +++ + + + Sbjct: 192 LHPRDLAAHTCLHY--RFPSNGKLETWPLRQEHPEQAYDIPISMVCNHVETRVCFALNHR 249 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI LPD+ V N +LV +++D + + Y +P + KL+ F +F+ + Sbjct: 250 GITCLPDFNVGRELANGSLVSVLDDFMERRGSFYLLWPSGRQMPPKLRVFIDFMLAR 306 >gi|262369809|ref|ZP_06063137.1| LysR substrate binding domain-containing protein [Acinetobacter johnsonii SH046] gi|262315877|gb|EEY96916.1| LysR substrate binding domain-containing protein [Acinetobacter johnsonii SH046] Length = 302 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 147/295 (49%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLSDLDDFYCFAQVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ + + QN + L FL YP Sbjct: 61 DIGMNIYRHAQVMMNAAQAAHDLVDHLSLQPRGVIKLSLPVSIAQNEIARILPSFLKTYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++Q+++ N+ +DI + D A+R+R + SL+ RK I H +A+ YL E Sbjct: 121 EIKVQMMVTNRRVDIINEGFDIALRVRSNLDDDPSLVIRKFENIEQHLFASQAYLNEFGE 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++L +H++++ D + ++ + + + R++ + + S LS++ V + Sbjct: 181 LKQPEDLSQHHILSMVD---EHLDQHIIVHNDAQQQKKIRVNPVVMGSDLSMLAQLVRKN 237 Query: 240 -GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD IV+D + LVR++ D P + YP G L A R FI Sbjct: 238 CGIALLPDSIVQDMVKSGELVRVLPDWKAPHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|24376001|ref|NP_720044.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24351004|gb|AAN57488.1|AE015885_1 transcriptional regulator, LysR family [Shewanella oneidensis MR-1] Length = 325 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 139/278 (50%), Gaps = 9/278 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE G + Sbjct: 11 VFATIAEKGSMSAAAQQLNLSSSAVSQQVAKLEMDMGISLFHRNTRHLTLTEAGHLFYEN 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ +E+ + +L PSG+L+IA + G LL L L +P I + L L Sbjct: 71 CIKIIKIVESGEHKLNALKGTPSGELKIAAPVGFGSGLLSQPLANLLAAHPQISLNLQLQ 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + IDI + D AI + P+ S+LI R L M AAP Y+ + EL Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARPLADWRMLLCAAPSYIPQHQILQHPGELQAF 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N I+ P+ + V+ + RIS VN+ +++Q + G G A+LP+ V Sbjct: 190 NRISHSYAKPEFLTHSQTQERVE--LSAQRIS---VNNMQTLIQLTLDGLGFAVLPEPEV 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + LV ++ + +++VY K K+K Sbjct: 245 HQYLASGQLVTLLPEWSLRTYSVYSVTSARDKQPAKVK 282 >gi|144898709|emb|CAM75573.1| transcriptional regulator, LysR family [Magnetospirillum gryphiswaldense MSR-1] Length = 298 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 11/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L F G FT AA +L S+S ISRQ++ LE ++G +L R R L+ TE G Sbjct: 4 FAALTAFVQTVECGGFTQAARRLGQSKSLISRQVAQLEAQLGARLLQRTTRKLSTTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L E+ + P GKLRI+ + G L L FL P++++ Sbjct: 64 AYYQRAHRILADLAEASAEIGQLQSMPRGKLRISAPMSFGVLHLTPALPRFLESCPELEM 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D A+R+ + + SSLI R++ I A+P YL C P Sbjct: 124 DLALTDRFVDLVEEGFDVAVRIGR-LADSSLIVRRITPIRRVLCASPAYLARCGHPQRPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L H + G L M W T D + R+SC + + ++ + G G Sbjct: 183 DLAHHACL--GHLE---MGSSEWRFLTADNGLETVRVSCRFRAGNGEALRTMALAGLGFV 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + + + LV +++ + +Y YP + K++ F +F+ Sbjct: 238 YLPSFFIGADLRAGTLVSVLDQYVPQDSALYGAYPHGRHLSAKVRVFLDFL 288 >gi|71734735|ref|YP_274406.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555288|gb|AAZ34499.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320328788|gb|EFW84787.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 303 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + + +F V RSGSF AA L + +++SR++ LE ++G +L +R R L LT Sbjct: 1 MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRKVQQLEIQLGTRLLHRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G H L +L +P G+LRIA D + +FL YP Sbjct: 61 QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S+Q L H ++ P + L D + E +++ N+ ++ + + G Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ + LV ++ S ++ YP + AF + K R Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296 Query: 296 DWKF 299 D F Sbjct: 297 DKAF 300 >gi|114561684|ref|YP_749197.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114332977|gb|ABI70359.1| transcriptional regulator, LysR family [Shewanella frigidimarina NCIMB 400] Length = 312 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 19/297 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +++++F V GSFT AA+ L ++++++SR+I+ LE + G++L +R R L LTE G Sbjct: 2 DLNRVQIFSQVVEQGSFTGAAKALGITKATVSRKIADLEADAGVQLLFRTTRSLKLTEAG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S + S++ L+ + L S G L++ I+LGQ L L FL YP+I Sbjct: 62 SSYYHRISKILQDLQNAEDLLSASQQDIKGNLKVICPIELGQLFLGRILARFLAAYPNIT 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L N+ ID+ + D ++ + L LVT A+P YLK P Sbjct: 122 IDAELTNRKIDVIEEGVDFLFQITEQ-HDPKLQSYSLVTASRLLMASPTYLKRHGTPQIP 180 Query: 184 QELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 Q+L H I G + + WL +D P + L+VN+ + + Sbjct: 181 QDLMLHTAIKLQSAHINGGW--RIFDGNQWL-DLDPP------AQLKVNNVTFAREAAIE 231 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GI +P +I + D+ L+ I+ED V +P+ + K + F F++ Sbjct: 232 GLGITAVPVFIAQEAIDSKQLIPILEDFPMMQTKVTLSFPQRVYLPRKYRVFVEFLY 288 >gi|302131086|ref|ZP_07257076.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 307 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 12/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F +GSFT AA+QL L++S++ + I LE + ++L R R L++T+ G Sbjct: 7 NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQV 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ V L+ + L PSG+LR++ + LG+ + +++ L +P + + Sbjct: 67 LYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDWPSLSVD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D A+R+ P + S L+ R + M A+P YL +P + + Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQPQTPDD 186 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H + F G L+P +N+ DR + LQ++S S+ Q V G GIA Sbjct: 187 LSEHQCLHFVSGGRLLP-----WNFRVN-DRSLSVTHGGRLQMDSAESLHQSAVAGLGIA 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ D+ LV+++ + + + YP + K++ F Sbjct: 241 TLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLF 287 >gi|262164197|ref|ZP_06031935.1| transcriptional regulator LysR family [Vibrio mimicus VM223] gi|262026577|gb|EEY45244.1| transcriptional regulator LysR family [Vibrio mimicus VM223] Length = 304 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V GSF+ A+++L +++S++S+++S LE ++GI+L R R L+LTE G + + Sbjct: 10 VFVAVVECGSFSLASKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGERYYYH 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S+ + + E +P GKL+I + G + + +F+ +YP ++I L L+ Sbjct: 70 VSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEIDLQLE 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D AIR+ + +S+L+ ++LVT A+P YL EP +L +H Sbjct: 130 DQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCRSVLCASPEYLTRHGEPEKPADLLEH 188 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N + + F+ + I + L VN+ +I + + G GIA LP ++V Sbjct: 189 NCLVYSYFRGGSEWTFHNQQQEVKVIPK---GNLTVNNSEAIRRALLAGLGIAQLPTFLV 245 Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L +M P VY +PE K++AF +F+ Sbjct: 246 SKDLARGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289 >gi|119947131|ref|YP_944811.1| transcriptional regulator, substrate-binding of LysR family protein [Psychromonas ingrahamii 37] gi|119865735|gb|ABM05212.1| transcriptional regulator, LysR family [Psychromonas ingrahamii 37] Length = 298 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 W + F VA SFT A ++L +S + +SRQI+ LE + ++L YR R +++T++ Sbjct: 1 MQWQGINEFVAVAEMHSFTLAGKKLKISTAQVSRQINALEKRLNVRLLYRTTRHVSVTQE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ V L + + KP G ++++ I G+ + + +FL Y I Sbjct: 61 GQIFYQHCHNVLEGLAAAEQAISSLQAKPQGHIKLSAPITYGEQKILPLINDFLCRYERI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L N+ +D+ D AIRL + SSL+ +KL A+P YLK EP S Sbjct: 121 QVTCELTNQRVDLVDGGFDLAIRL-GDLPDSSLVAKKLAARENFVCASPEYLKKFGEPHS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + EL +HN + D+ W T R+ L+ NS ++ + GI Sbjct: 180 LSELVQHNCLL-------GTRDY-WHFTEQGKEKNIRVRGNLRCNSGFGLVDAALKNIGI 231 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY ++++ N L+ ++ +V ++ YP+ + K++ +F+ Sbjct: 232 IQLPDYYLQEHINSGKLISLLNNVRVAEEGIWAVYPQNRYLSPKIRLLIDFL 283 >gi|296101170|ref|YP_003611316.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055629|gb|ADF60367.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 299 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 140/290 (48%), Gaps = 20/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA++ L +SS+S++IS LE +VGI+L R R L LT G Sbjct: 8 MALFALVAEMGSFTAAAQKADLPKSSVSQRISQLEQQVGIRLLNRTTRRLNLTFAGEHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI +G LL EF L YPD+ + + Sbjct: 68 VHCREMLAASERAEYAIQRLRENPSGRLRITCPAGIGATLLAHLNAEFQLRYPDVSLDVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186 + + +D+ D A+R KP Q SSLI R + + A+P YL REPL ++L Sbjct: 128 ISDDVLDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPEYLAR-REPLHHPRQL 185 Query: 187 DKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H IT L+ ED+ +L + ++ + + V G+GI Sbjct: 186 VDHRCITHKAWSEWLLQSESEDYRYLPD----------NAHMTDNLVYARECAVAGAGIT 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP ++++D LV+++ + ++ YP N+ L ++ +F Sbjct: 236 LLPAFLLEDKIEKGALVQVLPEWNVEGNDLWLAYPSRKLNSPALMSYIDF 285 >gi|107022467|ref|YP_620794.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689416|ref|YP_835039.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105892656|gb|ABF75821.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116647505|gb|ABK08146.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 310 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 5/290 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA+ L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 9 DLEAWAIFARVAETGSFAKAADLLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G + L L FL YP + Sbjct: 69 ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLHHLSPVLPAFLERYPRVD 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + S+L R+L + A+P YL P Sbjct: 129 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L++H +T+ +L F A+ D +G ++ N+ I+ V G G+AL Sbjct: 188 RDLEQHVCLTYTNLPTPEYWRFRHPASGDE-VGVSVHGRIRTNNADVILPALVGGHGLAL 246 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V D L +M D V P + ++ +F+ Sbjct: 247 QPEFLVWDELQRGALEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFL 296 >gi|299531717|ref|ZP_07045121.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298720276|gb|EFI61229.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 308 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 142/289 (49%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G+FT AA+ L + ++S+++ + LE + +KL R R +T+T G+ + Sbjct: 7 MRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ++ P G+LR+ + + L+ +L EF YP+IQI L Sbjct: 67 DRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPEIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ + AAP YL+ P ++L+ Sbjct: 127 VSDRTVDLISDNVDCVIRGGE-LADQSLVARRIGNLEFITVAAPEYLQRHGVPRHPRDLE 185 Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 N+I F + + +F+ V + + N+Y+S + + G GI L Sbjct: 186 SGHRNVIYFSPVSARRYPLEFHKGGEVIEIASPAHLGVNEGNAYISAI---LAGQGIGQL 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + +N L R++ED P +Y YP + K++AF +++ Sbjct: 243 SRFQIHKYLENGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWV 291 >gi|117620002|ref|YP_857691.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561409|gb|ABK38357.1| LysR-family transcriptional regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 143/287 (49%), Gaps = 10/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 LRVF V GS + A E+L +S++ ++R ++ LE +G +L +R R L+LT G + L Sbjct: 7 LRVFVSVVEQGSLSGAGEKLEMSRAMVTRYLAELEQWMGARLLHRTTRRLSLTGPGEEAL 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R + + E QI ++ P G+LRI ++ L + LL G ++L Y I + Sbjct: 67 NRARAMLALGEEMEQIAVRGDEA-PKGQLRITSSYSLSEALLVGAANDYLACYAGTAIDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D A+R+ + +L+ R+L T H A+P YL P +Q+L Sbjct: 126 LLLDRTVNLVEERIDLAVRITNDLD-PNLVARRLGTCHSVVCASPAYLARHPTPHKVQDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN +T+ K + +F D P P L N +++ + G+GI+L P Sbjct: 185 ALHNCLTY-TYFGKSLWEFQ---GPDGPESVPVSGNLSANISNLLLEATLEGAGISLQPR 240 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V+ D LV ++E VY Y + + L++F +F+ Sbjct: 241 YSVQPHLDTGTLVPLLEQWQPKRLGVYAVYGTRKQMSPLLRSFLDFL 287 >gi|300717430|ref|YP_003742233.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661] gi|299063266|emb|CAX60386.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661] Length = 300 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 18/293 (6%) Query: 5 WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +++L AR+G S+T AA L +S S+IS+ I LET++GI LF R R L LT Sbjct: 7 FERLTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLETQLGITLFTRTTRSLVLTA 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +LH + + + + S +P+G LRIA + +G +++ L +F LYP Sbjct: 67 EGRELHERALRLLQDADEIEQIAKRSRAEPAGTLRIAASYPIGLHMIAPVLPQFCALYPK 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++I L L ++ I I + D A+RL + S+L+ R+L + YA+P YL +C P Sbjct: 127 VKIDLRLSDRVISIVDESIDIAVRL-GDLDDSNLLSRRLSPYRLGCYASPEYLASCSAPE 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----VNSYLSIMQYCV 236 + +L H + + + F W V GE L V++ +++ Sbjct: 186 NPNDLMSHKTVNL--RYQQTGQLFRWPFQV----GERETEILPSSDVVVDASEAVLALVA 239 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G GI + ++ +N LV I+ + + E+ ++ ++A Sbjct: 240 AGGGIGMATSFMADSWVENKRLVPILTAFAVERHNITALWHESRRSNPAVRAL 292 >gi|152986793|ref|YP_001347649.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961951|gb|ABR83976.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 297 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 150/296 (50%), Gaps = 10/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA +GSFT AA+ L + ++++S + LE ++G +L +R R + LT+ GS Sbjct: 5 DSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTQDGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + ++ S + SG+L++ + + L+ L F +PDI+++ Sbjct: 65 VLERCRHLLEDMEELEGLFRDGS-RASGRLKVDVPSRVARLLIAPALPAFFREHPDIELE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DCA+R+ + + +SSL+ R+L + + A+P YL P + ++ Sbjct: 124 LGSSDRSVDLVQEGVDCALRVGQ-LGNSSLVARRLGEMALINCASPAYLAQHGVPQAPEQ 182 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD H + + P W R + S + VN+ S + C+ G G+ + Sbjct: 183 LDGHWAVNYAS--PTSGRVLPWEYREGGRSVTRVLRSRVTVNNAESYIACCLSGLGLIQI 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 P Y V+++ L ++ + VY YP + ++KAF +++ L+AR Sbjct: 241 PAYDVREHIERGELREVLPQWRAEAMPVYALYPHRRHLSRRVKAFVDWLERLLRAR 296 >gi|170698250|ref|ZP_02889327.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170136831|gb|EDT05082.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 294 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G + + EFL +P + Sbjct: 61 GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRQGTPET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +L H + +G W +D G R +Q N+ + + G Sbjct: 180 PADLAGHTCLLYGR-----ERRVGWEFRID---GAARTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP +IV D+ LV +++ T+ +P+ + L+ F F+ Sbjct: 232 LGIALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286 >gi|217972029|ref|YP_002356780.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217497164|gb|ACK45357.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 303 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+I+ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + DI + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKLKGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +EL HN I G + P +A R + +VNS + + Q + Sbjct: 182 KELSLHNGILLGTSRSAPIWPLGKGSRKTMANFQRKV--------RVNSPIMVKQLAMDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L + K N LV I+++ F VY Y + + F +F F+K Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDF-FVK 290 >gi|161523309|ref|YP_001578321.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351918|ref|YP_001947546.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221214265|ref|ZP_03587237.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|160340738|gb|ABX13824.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189335940|dbj|BAG45010.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221165920|gb|EED98394.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 294 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G + Sbjct: 9 AFVRAADALSFVAAGRTLGISASAVGKTIARLEQSLGVRLFNRTTRRITLTDEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + L + + S+ +P GKLR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDLRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR P+ SSL+ R+L A P YL P + +L+ H Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPRAPCDLEAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + P + +W D + + N+ ++ + G GI +PD++ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D LV +++D +P + + + KL+ F +F+ Sbjct: 245 RDALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|88859573|ref|ZP_01134213.1| transcriptional regulator, LysR family protein [Pseudoalteromonas tunicata D2] gi|88818590|gb|EAR28405.1| transcriptional regulator, LysR family protein [Pseudoalteromonas tunicata D2] Length = 299 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 19/292 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F V + GSF AA L S S IS++IS LE+ +G++L R R L+LT +G Sbjct: 7 FDGIEIFVQVVKCGSFNAAASVLSHSSSHISKEISKLESRIGVRLMNRTTRSLSLTPEGE 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ E + V+P G L+I+ I Q LQ + ++L +YP++ + Sbjct: 67 AYFQQCVQLISDAEQAVSLITADDVQPKGTLKISCPIGFSQQYLQSVIAQYLDMYPNVTL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L +K ID+ D D AIR + + SSLI +++ H + Y++ P + Sbjct: 127 EWDLSDKRIDLIADGYDLAIRASEQLVESSLICKRVFHCKAHVVVSKGYIEKYGRPHHPR 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCVL 237 EL H+ I + +L DF V+R G P ++ C L+++Q Sbjct: 187 ELAAHHCICYSNLKMPGRWDF-----VERD-GTPFQVDVRQKVRCNNGQMQLALVQ---A 237 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI LP + + D + L + D P VY YP + K++ F Sbjct: 238 HQGITRLPAFYLNDALQSGELEVLFCDYKEPEVNVYAIYPSRKHLSPKVRCF 289 >gi|86144245|ref|ZP_01062577.1| hypothetical protein MED222_07548 [Vibrio sp. MED222] gi|218676327|ref|YP_002395146.1| transcriptional regulators, LysR family [Vibrio splendidus LGP32] gi|85837144|gb|EAQ55256.1| hypothetical protein MED222_07548 [Vibrio sp. MED222] gi|218324595|emb|CAV26127.1| transcriptional regulators, LysR family [Vibrio splendidus LGP32] Length = 298 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 154/300 (51%), Gaps = 20/300 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A+ SFT A +L ++QS++S++I+ LE+++G+ LF R++R ++LT G Sbjct: 7 IRIFVETAQLNSFTATANKLDVTQSAVSKKIAWLESDLGMTLFQRNSRKISLTHAGKDYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + ++ T + L+ + G+L+I+ LL L+ F+ +P I+I L Sbjct: 67 TYCSRLLEEMSTIESRLKRETESVEGELKISAPSAFSSMLLSEPLQAFIEQHPGIRINLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D++ ++++ D AIR + ++ S L R L +H +A+P YL+ PL Q+L Sbjct: 127 IDDRIVNLNEHNIDVAIRASQ-LKDSGLKARFLFNNKVHYFASPDYLEKQGIPLYPQDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGI 241 +H +T+ + P W T D+ + + ++VN + +++ G GI Sbjct: 186 EHQCLTYSLMSPAN----EWRFT-DK---SDKTNTIKVNQIFTSDSPDMLLKMARQGLGI 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296 LPD++ K + L R++ED +Y Y + +++ F +F+ +L AR+ Sbjct: 238 VALPDWMGKEYVEKGELKRLLEDWSNNQLPMYVVYHASDYLPQRIRVFIDFLAKYLSARN 297 >gi|93006232|ref|YP_580669.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92393910|gb|ABE75185.1| transcriptional regulator, LysR family [Psychrobacter cryohalolentis K5] Length = 299 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 136/275 (49%), Gaps = 15/275 (5%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR VF V GSF+ +A +L ++ S++S+QI LE E+G+ L +R R L+LTE Sbjct: 3 DNLRGMAVFASVVGHGSFSGSARELGITTSAVSQQIRSLENELGVVLLHRSTRKLSLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + +V E +I++ + + +G LRIATT +LG N + L ++ + D+ Sbjct: 63 GASFYEAAKDVVSAAEQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHDDL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I DN ID+ + D AIR+ I S++ L + A+P YL+ ++ + Sbjct: 123 SITYFADNNYIDMIDERIDIAIRMSPNINDSTVSNHPLSDVRQMLVASPQYLRQHKKIET 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVLG 238 ++L H+LI M+D N + G + RI S + N+ M G Sbjct: 183 PKDLADHHLICI-----DIMKDTNNVELTQTETGKKTRIKMTSRIHTNNVFMAMTIAKEG 237 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVY 270 GI + + VK ++ NLV ++ PSF +Y Sbjct: 238 HGILRMMEMDVKKELESGNLVEVLTGYQMPSFVLY 272 >gi|330819148|ref|YP_004348010.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327371143|gb|AEA62498.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 302 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/312 (26%), Positives = 154/312 (49%), Gaps = 39/312 (12%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++++ LE ++G +L +R R + +T+ G + Sbjct: 8 DDLRVFSIVVRVASFSAAAEQLGVSPAYVSKRVALLEGQLGTRLLHRSTRRVAVTDSGER 67 Query: 66 L----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 + ++ +V H +E ++ + P G LRI+++ G+++L L +F +P Sbjct: 68 VLAWAEKILDDVDHLVE----DVSTTRTVPRGTLRISSSFGFGRHVLAPALLDFSERFPQ 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L L ++ +D++ + D +R+ I + LI ++L T + A+P YL+ P Sbjct: 124 INVRLDLFDRLVDVAGEGFDLDVRIGDEI-AEHLIAKRLATNYRVLCASPAYLERHGAPR 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI---- 231 I +L H +C+ + D P G R+ S ++V LS Sbjct: 183 QIADLGSH----------QCLA----IKERDHPFGVWRLTQRGETSSVKVGGALSTNHGE 228 Query: 232 --MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +Q+ + G GI L + D+ L R++ DV P+ V+ YP L + K++ Sbjct: 229 VAVQWALAGKGIVLRSIWEAGPLLDSGALKRVLPDVTQPA-NVWAVYPARLAASAKVRVC 287 Query: 287 RNFIFLKARDWK 298 +F+ W+ Sbjct: 288 VDFLAEAFAQWR 299 >gi|157376746|ref|YP_001475346.1| LysR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319120|gb|ABV38218.1| transcriptional regulator, LysR family [Shewanella sediminis HAW-EB3] Length = 293 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 135/271 (49%), Gaps = 9/271 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VV SF+ A+ +L++ S++SRQ++ LE +L YR R + LT +G Sbjct: 11 MRTFLVVVERHSFSAASRELNIVVSAVSRQVADLERHFNCQLLYRTTRAMHLTSEGEHYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R E+ +L+ + + +G L+I T + Q +++EFL L+P +++ + Sbjct: 71 RQFQEIIARLDNLESFSRHRGEIIAGHLKITTPQNSALIGFQSSIQEFLTLHPRVKVSWL 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +D+ + D A+R+ K ++ S+L+ R + A+P YL+ P +LD Sbjct: 131 QMNRYVDLVDEGVDLALRVGK-LEDSNLVARPFGEFTLKFVASPEYLRVNGTPSHPSQLD 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 KH I L W R+S ++VN+ + Q+ V G+A LPD Sbjct: 190 KHRCI----LDSSNRHPGRWQYQGSDKEELVRVSADVEVNNGQMVAQFAVADQGVAQLPD 245 Query: 247 YIVKDNPN---LVRIMEDVITPSFTVYFCYP 274 ++++D+ + LV I+E+ PS +Y YP Sbjct: 246 FLLQDHIDSGRLVSILEEFAMPSIPMYLVYP 276 >gi|28871413|ref|NP_794032.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854664|gb|AAO57727.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 307 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 12/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F +GSFT AA+QL L++S++ + I LE + ++L R R L++T+ G Sbjct: 7 NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQV 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ V L+ + L PSG+LR++ + LG+ + +++ L +P + + Sbjct: 67 LYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDWPSLSVD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D A+R+ P + S L+ R + M A+P YL +P + + Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQPQTPDD 186 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H + F G L+P +N+ DR + LQ++S S+ Q V G GIA Sbjct: 187 LSEHQCLHFVSGGRLLP-----WNFRVN-DRSLSVTHGGRLQMDSAESLHQSAVAGLGIA 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ D+ LV+++ + + + YP + K++ F Sbjct: 241 TLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLF 287 >gi|320324417|gb|EFW80496.1| LysR protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328462|gb|EFW84464.1| LysR protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 311 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 143/296 (48%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +++ P G+LR+ LL L F YPDIQI Sbjct: 64 AYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPSPFASMLLMPALPGFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + I SLI R++ + + YAAP+YL P+ + Sbjct: 124 DMGVSDRIVDMIGENVDCVVRGGE-ITDQSLIARRVGDLQLGVYAAPYYLTRMGTPVHPR 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ + +P M V G ++ N+Y++ + Sbjct: 183 ELEDSAHRVVGYLWARTSKALPYAMHRDGEKVHVQ---GRYALAVDDGNAYIAA---GLA 236 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ + + +L+ + +D S +Y +P + K++ F ++I Sbjct: 237 GMGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292 >gi|300693770|ref|YP_003749743.1| transcriptional regulator, lysr family [Ralstonia solanacearum PSI07] gi|299075807|emb|CBJ35116.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 292 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 117/247 (47%), Gaps = 7/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AAE L + S++SR+I LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVKAKGFRGAAEALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGQI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E +PSG LR + +D L + EF LYP I Sbjct: 65 YFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVIYLAPLIAEFAGLYPGITFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ +P +SS LI R L + H YA+P YL+ EP + + Sbjct: 125 FDLTPRQVDLVSEPFDVAIRMGEP-ESSQLIARPLALLQAHLYASPGYLERSGEPATPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + + + ATV +G +NS I + L GI L+P Sbjct: 184 LKRHECLGMLKVGSWTLHQGAQTATVS--VG----GRFTLNSVGMIRRLATLDMGIILVP 237 Query: 246 DYIVKDN 252 + IV D+ Sbjct: 238 EAIVADD 244 >gi|114563446|ref|YP_750959.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114334739|gb|ABI72121.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] Length = 289 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 122/244 (50%), Gaps = 7/244 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA G++ AA + ++S++ +S+ I+ LE +G+KL R R LTE G + Sbjct: 7 MQVFSHVAEQGNYGTAAHKFNISRTMVSKHINQLEAYLGVKLINRTTRQQELTESGHVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E + LQ S P G +RI + G +L + +FLL YP I ++L Sbjct: 67 QECQIILMAIEQAENTLQSMSSTPKGTIRINAPVSFGNIVLAPIVNQFLLQYPQIDVELR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID +D+AD +R+ + S+LI R ++ M A+PHYL SI +L Sbjct: 127 LDNNLIDPMVDHADVVVRIGN-LDDSALIGRHIMNYEMVFCASPHYLAQHSPIASISDLP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H+ + F LA + R L NS L ++Q + G GI L P Sbjct: 186 QHDCLGFS------YSKSASLAVAHSQLFGKRSFRLLSNSGLVLIQAAIDGLGIILQPQI 239 Query: 248 IVKD 251 +V++ Sbjct: 240 VVQE 243 >gi|134296059|ref|YP_001119794.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139216|gb|ABO54959.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 301 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWTFQEDGKVVSIRVSGTMECSDGAVLHEWCLAGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V D+ LV +++ P ++ +P+ Sbjct: 242 WWEVGDDVAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|296160079|ref|ZP_06842898.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295889553|gb|EFG69352.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 352 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA L LS + ++R ++ LE +G +L R R L+LTE G+ Sbjct: 6 SMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGTTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE + + + +P G LRI + G + L ++ + YPD+ + Sbjct: 66 LERVRHILDDLEGVEQMVVARNQEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++ +S++ R+L T +M A P YL P + L Sbjct: 126 TLADRHVDLVEEGFDVGILVARHMRGASIVTRRLTTGYMTVCATPAYLAQHGTPTRPEHL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 H ++ + E P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 LAHPCLS------RPAEQGGEERVFTGPDGEVRVRPTNAIVANNAEMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LV ++ + P + YP L K++ F Sbjct: 240 LPSYLIGRDLASGRLVPLLSNYRLPQIEITIAYPSRLHLPAKVRTF 285 >gi|27377897|ref|NP_769426.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27351043|dbj|BAC48051.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 140/304 (46%), Gaps = 33/304 (10%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD R+F V RSGSF AAE+L LS +++ R+I E + G LF R G LT++G Sbjct: 24 DWDAARIFLEVVRSGSFRSAAERLSLSINAVRRRIDDFERQTGTTLFTRDVHGTHLTDEG 83 Query: 64 ----SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 S + R+ + + L T+ ++ SG++R+A T LG L L EF Y Sbjct: 84 TMVVSAVERMEAAAFDVLRTS----DSTANVLSGEVRVAVTEGLGTFWLAPRLVEFQQAY 139 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI---HMHAYAAPHYLKN 176 P I + L + D+S AD AI L +P S + KLV + H+ +A+ Y++ Sbjct: 140 PKILVDLHCAMRSADVSRHEADVAIHLSRP----SALDVKLVRLGRMHLMFWASEKYIEK 195 Query: 177 CREPLSIQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P S EL KH L+ F D + E F G P L + + +S Y Sbjct: 196 HGAPRSAMELIKHRLVLQFADQL-AAKETFESFFP-----GVPERDLLVMKTNVSSANYW 249 Query: 236 VL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + G+GI + P Y V L+ + ++ P ++ Y +G++ R+ I Sbjct: 250 AVANGAGIGVFPSYAVALGGKLIPLEVELNRP-LDIWLSYH---PGSGRIPRVRHMI--- 302 Query: 294 ARDW 297 DW Sbjct: 303 --DW 304 >gi|288962020|ref|YP_003452330.1| transcriptional regulator [Azospirillum sp. B510] gi|288914300|dbj|BAI75786.1| transcriptional regulator [Azospirillum sp. B510] Length = 319 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 142/289 (49%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V + SFT AA++L+LS+S +SR+I LE +G +L R R L+LTE G Sbjct: 10 DDMLAFIKVVDTKSFTAAADRLNLSKSVVSRRIGELENRLGARLLNRTTRKLSLTEVGQA 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + LE + + + P G+LR+ + G L + EFL YP I+I Sbjct: 70 YYERCTRILADLEEAEQAVADLHAAPRGRLRLNAPVSFGILHLAPAVAEFLERYPAIEID 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+++ +D+ + D A+R+ + ++ SSLI R+L M A+P YL+ P + + Sbjct: 130 MDLNDRTVDLVDEGYDLAVRIGR-LRDSSLIARRLAPARMALCASPAYLQKHGVPETPDD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + + + +P D W VD R+S ++ N+ + + G G + Sbjct: 189 LADHNCLIYTN-VPN--PDL-WQFIVDGESRGIRVSGPIRSNNGDLLREAAAAGVGFIMS 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ LV ++ I +V YP+ + K++ F +F+ Sbjct: 245 PTFLCGQALARGELVSVLHSHIPTEVSVNAVYPQNRHLSPKVRVFVDFL 293 >gi|194366151|ref|YP_002028761.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348955|gb|ACF52078.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 301 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 16/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F + G AAE L +S + +S+Q+ LE +G+ L R R ++LTE G Sbjct: 4 FNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLEAHLGVVLLQRTTRRMSLTETGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + +LE + + E +G+LR+ + L L FL +P + + Sbjct: 64 AYYRECCRLLDELEALERGIAEQRGDVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQLSL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+++++ +D + D ++RLR + S L+ R+L ++ AAP YL+ P ++ Sbjct: 124 DLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLQQHPAPQAVD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241 EL H+++ + + D + P G+ I+ + VN+ L + V G GI Sbjct: 184 ELQAHSVLAY------SLSDSPGSWPLLGPDGQVTITLPARVTVNNSLLLRDLLVAGMGI 237 Query: 242 ALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ P L R ++ D P V+ YP + K++AF +F+ Sbjct: 238 GALPSFLAA--PALARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFL 289 >gi|107027487|ref|YP_624998.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693801|ref|YP_839334.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896861|gb|ABF80025.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116651801|gb|ABK12441.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 307 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 148/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++++ LE ++G +L +R R +T+T+ G + Sbjct: 8 DDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LR++++ G++++ L +F YP + ++ Sbjct: 68 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L T H A+P YL P S+ + Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRSLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233 L H+ + + D P G R++ ++V LS +Q Sbjct: 187 LTSHDCLAIKER--------------DHPFGVWRLNVRGETVTVKVGGALSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + + L R++ D P+ ++ YPE + + K++ +F+ Sbjct: 233 WALAGRGIVLRSIWEAGPLIERGELCRVLPDATQPA-NIWAVYPERVAASAKVRVCVDFL 291 >gi|72383804|ref|YP_293158.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72123147|gb|AAZ65301.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 307 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 12/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDWD LRVF ARS S A+ L +SQS+ISR+I LE + G KLF R ++GL+LT Sbjct: 4 FDWDNLRVFLAAARSQSTLEASHTLKMSQSTISRRIQRLERDTGSKLFERSSQGLSLTSA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L ++ L + + ++ +G++R+ +T G L + +F +P I Sbjct: 64 GHRLLEHVEKLESTLSAVETAVFSDTLALTGEIRLGSTEAFGTFFLAPHSAQFCSRHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++ + +++S AD ++ + +P ++S + KL + YA YL Sbjct: 124 TVDVLPMPRSLNLSKREADASVAIDRP-SANSFVTCKLSDYRLVPYATAEYLDKHPPIRK 182 Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L H I + D + + F W+ + RP L+ S ++ Q G Sbjct: 183 LDDLAGHRWIDYVDDLVFSPQQFMLQKWIPSC-RPF-------LRSTSAVAQAQAVKAGL 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LP ++ LV +M D I + T + P + ++KA +++ Sbjct: 235 GIAVLPCFLGSLIDGLVPVMLDEIHITRTFWLVAPPERREVARVKALWDYL 285 >gi|170732722|ref|YP_001764669.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169815964|gb|ACA90547.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 310 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 5/290 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA+ L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 9 DLEAWAIFARVAETGSFAKAADLLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G + L L FL YP + Sbjct: 69 ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLHHLSPVLPAFLERYPRVD 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + S+L R+L + A+P YL P Sbjct: 129 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L++H +T+ +L F A+ D +G ++ N+ I+ V G G+AL Sbjct: 188 RDLEQHVCLTYTNLPTPEYWRFRHPASGDE-VGVSVHGRIRTNNADVILPALVGGHGLAL 246 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V D L +M D V P + ++ +F+ Sbjct: 247 QPEFLVWDELQRGALEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFL 296 >gi|186476339|ref|YP_001857809.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184192798|gb|ACC70763.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 312 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQQRYPDVHLEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D A+ L + + S L+ ++L + A A+P YL+ P ++ +L Sbjct: 126 TLAQRMPDLLDEGYDVALVLAQSLPDSGLVSQRLGSAFSIACASPDYLERNGVPQTLSDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 H + +I M W T D P G+ + S Q+N ++ G G+A Sbjct: 186 RGHTCL---QMITPVMPADEW--TFDGPNGQETLHLGASTFQINVAEAMAVAVREGMGVA 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y + LV I+ + I+ VY YP K++ + F+ Sbjct: 241 VLPIYSAIAGLRSGELVWILPEYISQEMNVYALYPSRQYLDAKIRTWVEFL 291 >gi|170735831|ref|YP_001777091.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818019|gb|ACA92601.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 291 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 7/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F +AR+G+ AA QL++ Q+++ R+I+ LE E+ +LF R LT Sbjct: 1 MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPSLYVLTTA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + T + + + +G +RIATT LG+ + + + I Sbjct: 61 GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIANLRRRHAGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + +++ AD AIR +P +S LI R+L + YA+ YL EP++ Sbjct: 121 DVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEPVA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 D H+L+ + + M W A P R+ Q +S + +++ + G GIA Sbjct: 180 GSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 LP + P+LVR+M F V+ L T +++A Sbjct: 235 ELPCFRADTEPDLVRLMPQRCN-HFDVWLVAHADLYKTARVQA 276 >gi|90023595|ref|YP_529422.1| LysR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89953195|gb|ABD83210.1| transcriptional regulator, LysR family [Saccharophagus degradans 2-40] Length = 311 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 128/277 (46%), Gaps = 17/277 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F A GSF+ AA+Q S+IS+ + LETE+G+ LF+R R L LTE G + Sbjct: 7 LKFFIATADCGSFSGAAKQFGSDPSTISKAVRRLETELGVLLFHRTTRSLALTEAGHQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V L T+ EL + S +P G LRI G+ L ++ F YP ++ L Sbjct: 67 GTAKSVTESLNNTEFELADKSNEPRGTLRINAPFTYGRRYLVPAIQSFREKYPQVKFDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ IDI + D A+R ++ S LI R+L + A+P + S + Sbjct: 127 FNDAYIDIIENRFDIALR-SGSLKDSRLIARQLSPMDFVVCASPDVAASLPADFSPMHFN 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 + + F G L+P L VD I E + L V+ S+ + CV G+G+ Sbjct: 186 QVPWVRFRFKQTGKLMP-------ILFKVDGIIAEMECNADLVVDDGESMTELCVQGAGL 238 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 A LP + +K D LV + SF ++ YP+ Sbjct: 239 AQLPHFALKADLDAGRLVPLFPSCTYSSFGIHIIYPK 275 >gi|114048816|ref|YP_739366.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113890258|gb|ABI44309.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 303 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 144/298 (48%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+I+ LE E+G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LR+A + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRMAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + DI + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPAYLKARGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +EL +H+ I G + P + R + +VNS + + Q + Sbjct: 182 KELSEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSPIMVKQLALDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L + K N LV I+++ F VY Y + + AF +F F+K Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDF-FVK 290 >gi|163750492|ref|ZP_02157731.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] gi|161329813|gb|EDQ00801.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] Length = 314 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 136/281 (48%), Gaps = 25/281 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA+ L+L +S++SR++ LE E+ +KLF+R +R +TLT GS Sbjct: 4 EDIALFHRIVETGSLVDAADLLNLPKSTVSRRLQALEDELKVKLFHRQSRAMTLTASGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120 + T + LE T +EL ++ + G LRI +D+ + EF+ +P Sbjct: 64 FYDKTLAILGDLEQTLVELTDTQAEIGGHLRILMFPVPELLDIANGIF-----EFMDHHP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++LI+ + D+ + D A + + ++ R+++ +H A+P YL P Sbjct: 119 ELTVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREVINEELHFVASPDYLAKAGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC----V 236 + +E+++HN I F P N + P G ++ N L+ +Q C + Sbjct: 179 VLPEEIEQHNSILF--RYP------NGRIFSEVPFGNDMKIAVKGNLCLNSIQLCLQASL 230 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 G GIA LP + + D L + EDV Y YP Sbjct: 231 TGRGIAFLPTKLTREHVDRGELTILFEDVEPYIGKCYLVYP 271 >gi|329113564|ref|ZP_08242344.1| Putative HTH-type transcriptional regulator YafC [Acetobacter pomorum DM001] gi|326697086|gb|EGE48747.1| Putative HTH-type transcriptional regulator YafC [Acetobacter pomorum DM001] Length = 305 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 125/245 (51%), Gaps = 9/245 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V +G+FT AA + LS + +++ ++ LET +G+ LF R R L+LTE G Sbjct: 8 MQIFVKVVAAGNFTGAARLMALSPTMVTKHVTALETRLGVSLFQRSTRHLSLTEAGRLFL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +E + + E +P G+LR+ + + L EF YP +Q++L Sbjct: 68 ESCQKILADVENMEQTVSEQYREPRGQLRLNAPVSFAIRYVAPYLPEFSRRYPQVQVELG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D +R+R + S+L RKL + M A+P YL+ P + EL Sbjct: 128 LNDRPVDLVEEGWDLTLRIRN-LTVSTLRARKLAAVRMIICASPAYLEKAGTPTHVNELQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 +HN + + +++ + GE +S L N+ ++ + V G+GIA L Sbjct: 187 QHNCLGYTLSGNNSASRWHFGES-----GEKTVSVSGLLSANNGDALREAAVAGAGIAYL 241 Query: 245 PDYIV 249 P ++V Sbjct: 242 PLFVV 246 >gi|330819631|ref|YP_004348493.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327371626|gb|AEA62981.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 336 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 4/243 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L L ++S++ I LE +G++L +R R L+LT G+ + Sbjct: 7 MQVFTRVVDTNSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E T+ Q ++ KP GKLR+ LG+ ++ L EF YPDI +QL Sbjct: 67 ERCVRILAEVEETEASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRDRYPDIDLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC IR+ +Q SSL+ R++ A+ YL+ EP SI +L Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGVTVASRAYLERYGEPRSIDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + + + +W +D E ++ S + VN + + + G G+ P Sbjct: 186 DHRAVNY--FSSRTGRNIDWAFLIDGQEVEVKMESVVSVNDADAYVTCGIEGFGLIQPPL 243 Query: 247 YIV 249 ++V Sbjct: 244 FMV 246 >gi|302134270|ref|ZP_07260260.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331014475|gb|EGH94531.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 301 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 17/300 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ + Sbjct: 7 MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + EV + ++ +++ +P+G LRI + G LL L F +PD+++ L+ Sbjct: 67 QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D AIRL QSS LI R L + AAP YL P ++L Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAPTRPEDLR 186 Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 HN + F P E W T P GE + + N+ + Q G G Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + +LPD +V+ + LV ++ D P + Y +++ +L R+F+ W Sbjct: 243 VVMLPDALVQRDLQEGRLVALLPDYRLPRRPMNLLY---VQDRYRLPKLRSFVEFATAQW 299 >gi|152971493|ref|YP_001336602.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262043868|ref|ZP_06016957.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330013114|ref|ZP_08307568.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|150956342|gb|ABR78372.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259038802|gb|EEW39984.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533594|gb|EGF60311.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 288 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF AAE L L S+++ I LE + ++L R R ++LT +G + Sbjct: 1 MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E ++ L ES +P G+LR+ + ++ +L +F YPDI + + Sbjct: 61 AQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR + + +SSL+ R L A+P YL+ P S + L Sbjct: 121 VSDRQVDLIQEGVDCVIRTGE-LNNSSLVARPLGRFRWVTCASPDYLREYGVPPSPEALS 179 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H + + + ++F ++ T P+ VN ++ C+ G G+A L Sbjct: 180 QHRAVHYFSGQARRADEFRFVRHGETFSVPVS----GNAAVNETGLYIKMCLAGFGLAQL 235 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + IV D+ LV ++ D P V YP + ++AF ++ Sbjct: 236 AENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 284 >gi|332142490|ref|YP_004428228.1| putative transcriptional regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327552512|gb|AEA99230.1| putative transcriptional regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 292 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 10/242 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA G+FT AA +L S + ISR+++ LE ++G+KL +R R ++LTE G+ Sbjct: 10 FCAVAEVGNFTGAANKLDTSVAQISRKVASLEKQLGVKLLHRTTRSVSLTEAGTLYCEQA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 LE Q+ + P G +++ + G+ + L F+ Y I +Q I N Sbjct: 70 LPALKALEDAQLSVSALQNSPQGLIKLTAPVAFGEAFIAPLLNAFMQKYSGISVQCIFSN 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +DI D AIR+ K ++ S+L+ +KL T H++ A+ Y K P ++++L KH Sbjct: 130 EKLDIVDMGLDLAIRIGK-LEDSTLVAKKLSTRHLYVCASEQYFKENGRPKTLEDLKKHT 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 L+ W VD+ I P ++ NS ++ + G G+A LP + V Sbjct: 189 LLVGSQPY--------WRFLVDKTIRAIPVQGRVRYNSGNALCSAAIAGLGLAQLPGFYV 240 Query: 250 KD 251 ++ Sbjct: 241 RE 242 >gi|127513220|ref|YP_001094417.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126638515|gb|ABO24158.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 299 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 141/289 (48%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + +F V GSF+ AA +L +++S++S++IS LE +G+KL R R L LT+ G Sbjct: 4 YANIPLFVSVVELGSFSEAARRLGINKSAVSKRISALEQALGVKLIQRTTRRLHLTDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ Q L G L+++ GQ + L EF YP I + Sbjct: 64 QYYEYVHQAAALMQQAQDALASQQGAVQGSLKVSLPNVFGQRHIAPLLSEFSRQYPTINL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ LD++ +D+ + D +R+ + SSL+ KL H A+P YL + P S+ Sbjct: 124 EVSLDDRVVDLLKEGLDMVVRI-GDLPDSSLVAVKLAPCHSLLCASPDYLAHQSHPRSLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L HN + + F V R +PR ++VN+ I + + G GIAL+ Sbjct: 183 DLRGHNCLFYSYFRGGLEWSFERRGEVSRI--KPR-GNIKVNNSEVIRRLLLDGMGIALM 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y+V++ LV ++ D P+ +Y PE +L+ F +F+ Sbjct: 240 PRYLVEEELAAGTLVPVLSDYQAPTHGIYALTPERQHMPARLRVFIDFL 288 >gi|53718473|ref|YP_107459.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|53725114|ref|YP_102157.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|67639352|ref|ZP_00438218.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|76810670|ref|YP_332454.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121601500|ref|YP_991984.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124385192|ref|YP_001028431.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126448800|ref|YP_001079665.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|254176718|ref|ZP_04883375.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254203840|ref|ZP_04910200.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254208817|ref|ZP_04915165.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254260030|ref|ZP_04951084.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254360128|ref|ZP_04976398.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52208887|emb|CAH34826.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|52428537|gb|AAU49130.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|76580123|gb|ABA49598.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121230310|gb|ABM52828.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|124293212|gb|ABN02481.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126241670|gb|ABO04763.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|147745352|gb|EDK52432.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147750693|gb|EDK57762.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|148029368|gb|EDK87273.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|160697759|gb|EDP87729.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|238519887|gb|EEP83353.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|254218719|gb|EET08103.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 294 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ L +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + PR + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFAIRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + L +++ I T + +P + KL+AF +FI Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288 >gi|331015557|gb|EGH95613.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 313 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 12/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F +GSFT AA+QL L++S++ + I LE + ++L R R L++T+ G Sbjct: 7 NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQV 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ V L+ + L PSG+LR++ + LG+ + +++ L +P + + Sbjct: 67 LYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDWPSLSVD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D A+R+ P + S L+ R + M A+P YL +P + + Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQPQTPDD 186 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H + F G L+P +N+ DR + LQ++S S+ Q V G GIA Sbjct: 187 LSEHQCLHFVSGGRLLP-----WNFRVN-DRSLSVTHGGRLQMDSAESLHQSAVAGLGIA 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ D+ LV+++ + + + YP + K++ F Sbjct: 241 TLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLF 287 >gi|325122859|gb|ADY82382.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 343 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 7 MKVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 67 DRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 127 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 186 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 243 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 244 RYMLTNH 250 >gi|146338059|ref|YP_001203107.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190865|emb|CAL74870.1| putative transcriptional regulator, LysR family [Bradyrhizobium sp. ORS278] Length = 294 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 142/297 (47%), Gaps = 11/297 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F VA F AA +L LS S+I+R ++GLE +G++L R R +TLT+ G + Sbjct: 5 DAMQAFVTVAELNGFAPAARRLKLSPSAITRLVAGLEEHLGVRLLQRTTRSVTLTDAGRR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + LE ++ ++P G+L ++ + G+ + + +L YP++ + Sbjct: 65 YLERVRRILTDLEEAELAAASERLQPVGRLVVSAPVGFGRLHVGPVMAAYLSRYPEVAGE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ I++ D DCA+R+ +Q SSL+ R++ ++ AP Y K EP + + Sbjct: 125 LRLEDRQINLVDDGVDCAVRIGH-LQDSSLVARQVGSMRRIVVGAPAYFKAHGEPRAPEA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + KH I FG P F R PR L N+ + +QY G G+ + Sbjct: 184 VAKHQTIQFG---PADEWQFVKEGRELRIAVSPR---LVTNNADAAIQYAEAGGGVTRVM 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 Y + L R+M ++ +P + + K++AF + + + +W+F Sbjct: 238 AYQAAEMLRAGRLRRVMTKFEPAPVPIHIVFPSSRLLSAKVRAFVDLV-TETCNWRF 293 >gi|313499526|gb|ADR60892.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 298 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 144/288 (50%), Gaps = 9/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A++ L +S S++ ++++ LE+ +G++LF+R R +TLT +G+ Sbjct: 9 VFNRVAETRSFVAASQSLGISASAVGKRVARLESRLGVRLFHRSTRSITLTAEGTMFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T+ EL ++S P G+LR+ ++ L+ L EF+ LYP +++ L Sbjct: 69 SRRILAEIEATEQELSQASETPRGRLRV--SMPQVTRLVMPALAEFMALYPQVELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R +P+ S L + L A+P YL+ PL ++L H Sbjct: 127 DRMVDIVGEGFDVVMRGGQPVD-SRLSAKFLGHFQHRLVASPEYLRERGTPLHPRDLAAH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDYI 248 + + P + W + P I V +++ + + + GI LPD+ Sbjct: 186 TCLHY--RFPSNGKLETWPLRQEHPEQAYDIPISMVCNHVETRVCFALNHRGITCLPDFN 243 Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 V N +LV +++D + + Y +P + KL+ F +F+ + Sbjct: 244 VGRELANGSLVSVLDDFMERRGSFYLLWPSGRQMPPKLRVFIDFMLAR 291 >gi|332975063|gb|EGK11969.1| LysR family transcriptional regulator [Kingella kingae ATCC 23330] Length = 293 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 20/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +SGSFT AA+ L +S S+ ++ LE VG +L YR+ R L LTEQG + Sbjct: 7 MKVFCQVVQSGSFTRAADLLDISIPMASKHVAHLEKNVGAQLLYRNNRSLKLTEQGERYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + S L Q + KP G LRI+ + + L E+ LYPD+++ L Sbjct: 67 QDCSTALELLAQAAESAQAGTSKPQGLLRISAPVWFACDHFAHLLHEYQTLYPDVELMLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D++ D D A+RL + + ++I + L I + A+P Y+ +P EL Sbjct: 127 LTNQRVDLNSDGEDLALRLTHTL-ADNIIAKPLGKIPFYLAASPSYIAQHGQPTHPDELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGI 241 +H + ++ + L+ + RI+ LQ+N + +L G+GI Sbjct: 186 QHQAV---------LQSYVDLSQLSGEYKGQRIN-LQLNGKIRSNHTQMLASLIRAGAGI 235 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +P ++ D+ L+R++ D +Y Y K+++F +F+ K + Sbjct: 236 GYIPAWLADDDLRAGRLIRLLPDCQMQDPPLYAVYANRQFMKAKVRSFIDFMAQKCQ 292 >gi|224826216|ref|ZP_03699318.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224601317|gb|EEG07498.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 293 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AAE LSQ + + I LE +G +L R R LTE G + + Sbjct: 7 MEVFVAVVERGSFTAAAEAFGLSQPMVGKHIRALEQRLGARLLARTTRRQHLTEIGEQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ +I + P G L+I + G L L EF++ YP++ ++L Sbjct: 67 QRCRHILAEIRDAEIGAERLHQAPRGMLKINAPVTFGSLRLAPALGEFMVQYPEVSVELA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D IR+ ++ S L+ R L M AAP YL+ P + EL Sbjct: 127 LSDQVVDLVEEGCDALIRIGTLVE-SGLVARPLAPYRMMVCAAPAYLQRWGTPRTPGELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + L K W +P + Q N+ ++ + G GI + P+ Sbjct: 186 GHQWLGH-SLWEK---HAGWRLPTGADAVDPPAARFQSNNGQALRMVALQGGGIVMQPEV 241 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++ ++ LV I+ D + S ++ Y + KL+AF +F+ Sbjct: 242 LLAEDVAAGRLVEILADYLPSSKPMHVLYLPDRQQVPKLRAFIDFVL 288 >gi|190573807|ref|YP_001971652.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011729|emb|CAQ45348.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 343 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 21/306 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS D ++ +F V GSF AA+ L L ++++SR++ LET +G +L +R R L LT Sbjct: 1 MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR +G + L +F YP Sbjct: 61 EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ + + N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRV-GALPDSNLVARKLGSLRTQVFASPAYIERYGEP 179 Query: 181 LSIQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLS 230 L +EL H ++ G+ P+ F W + GE P + N + Sbjct: 180 LHPEELQFHRILAMRKPYHTGN-SPR----FTW--QLGENGGELRDFPVTPLMTANDMSA 232 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + V G G+ L D + K ++ + R++ P + + K++AF Sbjct: 233 LNGALVCGEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFV 292 Query: 288 NFIFLK 293 +F+ K Sbjct: 293 DFLVEK 298 >gi|89073952|ref|ZP_01160458.1| Hypothetical transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] gi|89050280|gb|EAR55784.1| Hypothetical transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] Length = 300 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 8/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE ++++S +S++IS LETE+G++L YR R LTLTE G Sbjct: 5 DDLVLFTQVIEHGSFSKVAELNNVTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGEV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + H + ++ S SGK+R++ G+ +L + +F +P + + Sbjct: 65 LYHRAKSINHVAQAAFDSVKGYSEALSGKVRMSVPTISGELVLAKAVSDFCQKHPGLSVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N +D+ D D IR ++ SSLI R + A+P Y+++ +P ++ Sbjct: 125 MSLNNHFVDLVADNYDLVIRTGY-LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L+ HN + + P+ F+W I ++S ++ +++ + + G+GIA L Sbjct: 184 LNCHNCLGYN---PQSTGPFDWQFIKQNKIYNQKVSGNFSSDNAIALKKNVLAGNGIAYL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P+ ++ D LV ++ +Y YP K +++A Sbjct: 241 PNCLIHDELERGELVELLSTHAGKVVGIYAVYPYTRKPAKRIQAL 285 >gi|119386012|ref|YP_917067.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376607|gb|ABL71371.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 301 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 24/291 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD LR+F VAR+GS + AA L ++ S++ R+I E +G++LF R G LT+ G Sbjct: 7 DWDDLRLFLAVARAGSLSGAARSLGVTHSTVFRRIGAFEARLGVRLFDRLPGGYALTQAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + ++ +++ +P+G +RI TT L +L ++ F +P+I+ Sbjct: 67 EEMRDSVIRIEEEITALALKVTGQDQRPTGTIRITTTDLLAVGVLPRHVAAFRAEWPEIE 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I++I+ + +D++ AD A+R+ P Q +LI R++ + AY A R P Sbjct: 127 IEVIVADTVLDLTRREADVALRIGNPGQ-ETLIGRRVGRLAFAAYGAAD-----RPPGDP 180 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 E D I +G P W + + NS ++ +G G+A Sbjct: 181 AEGD---WIGYGSAHGPLSRNLARWWPDARQ--------IYRTNSIIAAHAGAKVGIGLA 229 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP I +P+L+R + ED + ++ E L+ T +++ F +F+ Sbjct: 230 ALPCVIADCDPSLIRAAALPEDFM---LDLWLLIHEDLRQTARIRLFLDFM 277 >gi|194365342|ref|YP_002027952.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348146|gb|ACF51269.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 343 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 21/306 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS D ++ +F V GSF AA+ L L ++++SR++ LET +G +L +R R L LT Sbjct: 1 MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR +G + L +F YP Sbjct: 61 EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ + + N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRV-GALPDSNLVARKLGSLRTQVFASPAYIERYGEP 179 Query: 181 LSIQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLS 230 L +EL H ++ G+ P+ F W + GE P + N + Sbjct: 180 LHPEELQFHRILAMRKPYHTGN-SPR----FTW--QLGENGGELRDFPVTPLMTANDMSA 232 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + V G G+ L D + K ++ + R++ P + + K++AF Sbjct: 233 LNGALVCGEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFV 292 Query: 288 NFIFLK 293 +F+ K Sbjct: 293 DFLVEK 298 >gi|168235654|ref|ZP_02660712.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736666|ref|YP_002114575.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712168|gb|ACF91389.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290987|gb|EDY30340.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 302 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 144/292 (49%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + ++ V GSF AAE L L + +++R + LE ++G+KL +R R +++T++G + Sbjct: 7 EAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +L+ + L S+ P G+LR+ I L + ++ L +F YPDI+I Sbjct: 67 FYQRCLLLLSELDDVR-RLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIV 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DC IRL + + SS + R+L T M AAP YL P SI E Sbjct: 126 LGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184 Query: 186 LDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241 L K H + F ++ W TVD I ++ S + V++ + + + G GI Sbjct: 185 LMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGILH 242 Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P +I L I+ D P V YP+ K++ F +++ Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292 >gi|33599456|ref|NP_887016.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33567052|emb|CAE30965.1| probable LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 328 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++S+++ + LE + ++L R R + T G+ Sbjct: 4 FDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ LE + L +S P G+LR+ +L L F YPDI + Sbjct: 64 AYYERVRQLLADLEDAETSLSGASATPGGRLRVDVPSPFASTILVPALPAFQARYPDILL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++++D+ + DC IR + I + SL R + + + YA+P YL P + Sbjct: 124 HLGVSDREVDLIDENVDCVIRGGQ-IGNLSLAARHVGDLQLGVYASPGYLARAGVPAHPR 182 Query: 185 ELD--KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL +H +I F L P M + V G + + N+YL+ + Sbjct: 183 ELQDAQHRIIGFSWSRARRLFPCAMRRADERIEV---AGRHALLLDEGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +P Y+ + + L+R+ D +Y YP+ + KL+ F ++I Sbjct: 237 AMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRVFIDWI 292 >gi|293609592|ref|ZP_06691894.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828044|gb|EFF86407.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 343 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 130/247 (52%), Gaps = 5/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SF+ AA+ L L ++S++ I LE + ++L R R ++LT G+ + Sbjct: 7 MKVFNKVVETNSFSLAADSLGLPRASVTTTIQALERHLQVRLLNRTTRKISLTPDGAVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + + + ++ P G+LRI + +G+ +L L++F YPDI + + Sbjct: 67 DRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + DCAIR+ + ++ SSLI R++ T A+P YL+ EP SI++L Sbjct: 127 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 K H I F + +F+W VD I + + VN + + + G GI P Sbjct: 186 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 243 Query: 246 DYIVKDN 252 Y++ ++ Sbjct: 244 RYMLTNH 250 >gi|190572889|ref|YP_001970734.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010811|emb|CAQ44420.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 299 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 9/300 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D + +R+ VA + SFT AA QL LSQS +SR I LE +G+KL R+ R + LT Sbjct: 5 SLDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAIGRLEATLGVKLLQRNTRNVALTP 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + L+ + +L + PSG L+I+ G+ +L L L +P Sbjct: 65 DGRQFVEQVAPLLAGLDDAERQLADRPCTPSGTLKISAPSMFGRKVLVPMLAPLLEQHPQ 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q++ +L ++ +D+ + D A+R I ++ R L + A+P YL C P Sbjct: 125 LQVEAVLSDRLVDLVEEGFDAALRT-GVIADQRIVARPLRPLRWVTVASPAYLARCGAPD 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + L H + +L + D+ +L R P + + +S +++ + G G Sbjct: 184 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREFTPP--TRMVFDSGDPLVEAAIAGIG 241 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 I + D+ V D + L R+++ S + YP + +++ KL+ + + A DW Sbjct: 242 IVQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALL--AGDW 299 >gi|163793888|ref|ZP_02187862.1| LysR family transcriptional regulatory protein [alpha proteobacterium BAL199] gi|159180999|gb|EDP65516.1| LysR family transcriptional regulatory protein [alpha proteobacterium BAL199] Length = 274 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 131/248 (52%), Gaps = 5/248 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L++F VAR GS AA L SS+SR ++ +E E+G++LF+R R L+LTE Sbjct: 1 MDLNTLQLFCDVARLGSLAAAARHRGLDPSSVSRGVAAIEAELGVRLFHRTTRTLSLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ V ++LE + ++ S P+G LR+ ++ Q + + +F +PD+ Sbjct: 61 GAVYLSRAEAVVNELEQARDSVRAISAGPAGTLRLTASVAFAQICIVPLIHQFRDAFPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ ++++DI + D AIRL P +S LI +L+ A+P YL Sbjct: 121 KLELLATDRNLDIVAERIDLAIRL-APDRSGELIGSRLMDTRYRVVASPAYLARAPRLTQ 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +L KH L+ F +P+ + + D I E ++ + ++S L++ + + G G Sbjct: 180 PADLSKHRLLLFD--LPEFRSAWRFRGP-DGQIVEVAVNGDVVISSALALRESALNGLGP 236 Query: 242 ALLPDYIV 249 ALL ++++ Sbjct: 237 ALLANWLI 244 >gi|330987379|gb|EGH85482.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 303 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + + +F V RSGSF AA L + +++SR++ LE ++G +L R R L LT Sbjct: 1 MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLQRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G H L +L +P G+LRIA D + +FL YP Sbjct: 61 QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179 +Q++ +L ++ D+ D D A+R P+Q S + R+L+ H A+P Y+ Sbjct: 121 RVQLEFVLSDERADLIADRLDIALR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S+Q L H ++ P + L D + E +++ N+ ++ + + G Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ + LV ++ S ++ YP + AF + K R Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296 Query: 296 DWKF 299 D F Sbjct: 297 DKAF 300 >gi|77460696|ref|YP_350203.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384699|gb|ABA76212.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 301 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 14/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GS + AA+ L LS+ +SR ++ LE VG +L +R R L+LT G+++ Sbjct: 7 MRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTTAGNEIL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ Q + E + P G LRI+ + GQ L + F+ YP + I L Sbjct: 67 PRCRQMLDLSGDMQAAVSEPADAPRGLLRISVSTSFGQAQLADAMAAFVKAYPGVNIDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +++ + D AIR + +LI R+L AAP YL+ +P +++L Sbjct: 127 MLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCAAPAYLQEHPQPQRVEDLS 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +HN +T FG + ED P+ P + N ++++ + G+G+A+L Sbjct: 186 RHNCLTHSYFGKSLWHFEED-------GEPVSVPVQGNISANEASTLLRATLAGAGVAML 238 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y+ + LVR++ ++Y Y L+ +F+ Sbjct: 239 PTYLAGAHIHSGELVRLLPHAEPRQMSIYAVYASRKHMPAALRCMLDFL 287 >gi|323529427|ref|YP_004231579.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386429|gb|ADX58519.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 307 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 147/301 (48%), Gaps = 11/301 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LRVF VAR SF+ AAE L +S + +S++I+ LET +G +L +R R + +TE Sbjct: 6 SPDLGDLRVFCEVARKASFSAAAESLSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +++ ++ ++ ++ + P GKLRI+++ G+ + L F YP Sbjct: 66 AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D++ + D IR+ I + LI R+L + H A+P YL P Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDIRIGDDI-APHLIARRLASNHRVLCASPDYLARHGAPR 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + +L H + I + F W TV +++ L N +Q+ + G Sbjct: 185 QLADLSSHACLA----IKERDHPFGLWRLTVRGEAASIKVTGPLSTNHGEVAVQWALAGR 240 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI L + V+ D+ L +++ + P+ ++ YP L + K++ +F+ + Sbjct: 241 GIVLRSMWDVRPLLDSGQLQQVLPEATQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQ 299 Query: 297 W 297 W Sbjct: 300 W 300 >gi|153824339|ref|ZP_01977006.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] gi|149741893|gb|EDM55922.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] Length = 302 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 147/289 (50%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V GSF+ AA++L +++S++S+++S LE ++GI+L R R L+LTE G Sbjct: 5 FSSIPVFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGE 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + S+ + E +P GKL+I + G + + +F+ +YP ++I Sbjct: 65 RYYYHVSQALSYARQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEI 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+++ +D+ D AIR+ + +S+L+ ++LVT A+P YL EP Sbjct: 125 DLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCKSVLCASPEYLARYGEPEKPA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN + + F+ + I P+ L VN+ +I + + G GIA L Sbjct: 184 DLLEHNCLVYTYFRGGNEWTFHHQQQEVKVI--PK-GNLTVNNSEAIRRASLAGLGIAQL 240 Query: 245 PDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V KD L +M P VY +PE K++AF +F+ Sbjct: 241 PTFLVSKDLAGGALQSVMTHYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289 >gi|94313791|ref|YP_587000.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357643|gb|ABF11731.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 308 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF AAE L L +++++R I LET +G+KL +R R +++T G+ + Sbjct: 7 MQAFTRVVDVGSFARAAESLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTTDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + L + P G L + TT L Q +L +L +F YPD++++L Sbjct: 67 ERCVRILADVEEAEQSLTRHNNSPRGTLCVDTTSGLAQMVLLPHLHDFFKAYPDLKLELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ K ID+ + D +R+ S++ R++ + + YA+P YL+ P ++ EL Sbjct: 127 INGKPIDLLKEGVDVVLRVGA--LDESMVARRIGQLKLAFYASPIYLRRVGTPQNLTELA 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + F L + + W + E + S + N M + G GIA + Sbjct: 185 QHKAVNF--LSNRTGREMPWPLSRGGERTEVLLPSAISTNDADVYMACALEGHGIARISR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + + ++ LV +M D T + YP+ + K++ F N+ Sbjct: 243 AMAEPYVNSGRLVEVMSDWQTDELPISAMYPQNRHLSAKVRVFVNW 288 >gi|71281213|ref|YP_270268.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71146953|gb|AAZ27426.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 307 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 16/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD ++ Y VA GS + A L ++ +++ R+I+ LE + +KLF RH RG LT+ G Sbjct: 6 WDDYKIAYQVALDGSLSRAGVSLRINHATVLRRINQLEQALEVKLFIRHQRGYKLTDAGC 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L E+ K + + +LQ SG+LRI TT+ ++ LK F YP I++ Sbjct: 66 VLMDEMPEMLAKFSSLENKLQNVEGDISGELRI-TTVSSFSPVITPALKAFRAKYPKIRL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +LI + + + A ++R L+ + L+ + +A Y+ +P +I Sbjct: 125 KLISTDDIVPLDSGAAHVSLRAGPSPVGVDLVVKNLIKLETAYHATQDYIDEFGQPKTIN 184 Query: 185 ELDKHNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 E + H + +P + N++ VD+ I + RI Q N++ I + G G Sbjct: 185 EFNDHQWV-----LPTPEKYRIPFVNYI--VDK-IDKNRI-VFQSNNFSDIHDAVIAGMG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 I L D+ NP++V+I D+ +++F Y + LK++ ++++F + FLKA Sbjct: 236 IGPLSDHQASLNPSMVKIDLDIPKNGESIWFVYHKDLKHSARIQSF--YHFLKA 287 >gi|107026639|ref|YP_624150.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692171|ref|YP_837704.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896013|gb|ABF79177.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116650171|gb|ABK10811.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 297 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 7/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F +AR+G+ AA QL++ Q+++ R+I+ LE E+ +LF R LT Sbjct: 7 MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPSLYVLTTA 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + T + + + +G +RIATT LG+ + + + I Sbjct: 67 GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIANLRRRHAGI 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + +++ AD AIR +P +S LI R+L + YA+ YL EP++ Sbjct: 127 DVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEPVA 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 D H+L+ + + M W A P R+ Q +S + +++ + G GIA Sbjct: 186 GSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 LP + P+LVR+M F V+ L T +++A Sbjct: 241 ELPCFRADTEPDLVRLMPQRCN-HFDVWLVAHADLYKTARVQA 282 >gi|330809547|ref|YP_004354009.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377655|gb|AEA69005.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 304 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 15/299 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V RSGSF AA +L + +++SR++ LE ++ +L R R LTLT Sbjct: 2 LDLNDVALFVQVVRSGSFAEAARRLGMPSNTVSRRVQQLEAQLESRLLQRSTRKLTLTHA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + L EL S +PSG +RIA D + +FL +P + Sbjct: 62 GQGFYERCVDAVDGLMDAGQELMMGSEEPSGLVRIAAMADFFDFFPMEWVADFLAAHPRV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPL 181 Q+ +L + +D+ D D A R P+Q S + R+L+ A+P Y+ PL Sbjct: 122 QLDFVLSDARVDLIADRIDVAFR-GGPLQDSGYVGRQLLKNDGDGMVASPAYIAARGTPL 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVL 237 S+Q+L H+ ++FG P M + ++ P G E ++ S N+ ++ + V Sbjct: 181 SLQDLAHHDGVSFGQ--PGGMAHWRFVG----PDGIEEQVQIASRFHANTAQALRRATVA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GIA+LP + + LVR++ F + YP + + AF + K Sbjct: 235 GLGIAVLPGALSSLDLEAGRLVRVLPQYRRIGFGLNVLYPSRRQLPLAVSAFIGLVMEK 293 >gi|58040565|ref|YP_192529.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58002979|gb|AAW61873.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 303 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 7/247 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF+ AA L LSQ+ +++ I+ LE+ +GI LF+R R L+LTE G Sbjct: 8 MQVFAKVVAQGSFSGAARSLGLSQTMVTKHIAALESRLGISLFHRSTRKLSLTEPGRLFF 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ LE + E+ + +P G LR+ + + L EF +P + ++L Sbjct: 68 IRSQKILTDLEEMEQEVSAENQEPRGLLRLNAPVSFAIRHVGPILPEFSRRHPLVTVELG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID + D +R+ + + SS+L R+L + AAP YL+ P S+ +L Sbjct: 128 LDDRRIDPITEGWDLTLRIGR-MPSSALRSRRLAQVDFVVCAAPSYLEEYGTPRSVADLP 186 Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H + T GD I F P+ P + N+ + + V G GI P Sbjct: 187 NHRCLGYTLGDEISSARWSFGPNGERTVPVSGP----MHANNGDILREAAVAGQGIIYQP 242 Query: 246 DYIVKDN 252 +IV D Sbjct: 243 TFIVSDE 249 >gi|15598826|ref|NP_252320.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9949789|gb|AAG07018.1|AE004783_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 302 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA +G FT AAE++ +S S ISRQ++ LE + +L YR R ++L+E G Sbjct: 4 WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + S +P G LR+ + G+ + + F+ YP +++ Sbjct: 64 TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + + S L+ +L M+ A P YL+ P S Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL + N + + +ED T R G R NS +++ + G G+ L Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + + L ++E P+ V+ YP+ + K++ +++ Sbjct: 236 PDYYVIEHLRSGRLASLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284 >gi|21230893|ref|NP_636810.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769108|ref|YP_243870.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188992256|ref|YP_001904266.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris str. B100] gi|21112503|gb|AAM40734.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574440|gb|AAY49850.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167734016|emb|CAP52222.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris] Length = 344 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 5/297 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V GSF AA L L ++++SR++ LET +G +L +R R + LT Sbjct: 1 MTHDLNDTLIFVKVVEQGSFIAAANSLGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ H + +LE + + + P G LR LG + L EF YP Sbjct: 61 EAGAVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+ + L N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H + F W + + E ++ L V + + + VL G Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVREFPVNPLMVANDPAALNGAVLCGE 239 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L D + K + + R++ P + + K++AF +F+ + Sbjct: 240 GLLLTGDVMAKPFVQSGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296 >gi|53717207|ref|YP_105988.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|67643307|ref|ZP_00442054.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|121596794|ref|YP_989970.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124383253|ref|YP_001024453.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126447888|ref|YP_001078126.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|167003900|ref|ZP_02269679.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254174085|ref|ZP_04880747.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254200832|ref|ZP_04907197.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254204802|ref|ZP_04911155.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254357053|ref|ZP_04973328.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52423177|gb|AAU46747.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|121224592|gb|ABM48123.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|124291273|gb|ABN00543.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126240742|gb|ABO03854.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|147748444|gb|EDK55519.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147754388|gb|EDK61452.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|148026080|gb|EDK84203.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|160695131|gb|EDP85101.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|238524623|gb|EEP88055.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|243060657|gb|EES42843.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] Length = 299 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G ++ +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARMLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ G GIA Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270 >gi|325923211|ref|ZP_08184891.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] gi|325546308|gb|EGD17482.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] Length = 306 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 146/288 (50%), Gaps = 9/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + + LE ++G++LF+R R +TLT +G+ Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKHVVRLEEKLGVRLFHRSTRSVTLTAEGTLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL +++ P G+LR+ ++ L L+ L +F+ YP+I++ L Sbjct: 69 SRRILAEIEAAELELSQATAAPRGRLRV--SLPLVSALVLPVLGDFMRHYPEIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P S L R+L M AP+YL P +L +H Sbjct: 127 DRMVDVIEEGFDAVVRTGEP-SDSRLSARRLGGFQMMLVGAPYYLAQRGTPRVPVDLLQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + P + W R GE + + + N+ + + + V G GIA LPD+ Sbjct: 186 ACLHY--RYPNSGKLEAWPLHTRRNSGELVLPTSMICNNIETRVCFAVQGLGIACLPDFA 243 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++D + L+ ++ + + S + +P + + K++AF +F+ K Sbjct: 244 IRDLLADGRLLPVLAEHVRRSGAFHVLWPASKHPSPKVRAFVDFLCAK 291 >gi|170696486|ref|ZP_02887611.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170138589|gb|EDT06792.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 300 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 66 LEDCQRIIHDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P S+ +L Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLSRRGAPHSLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + G + W+ D + ++S ++ + + ++C+ G G+A Sbjct: 185 AQHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|119382985|ref|YP_914041.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372752|gb|ABL68345.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 300 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 143/303 (47%), Gaps = 35/303 (11%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L F A + SFT A +L +S S++ + ++ LE E+G++LF+R R +TLT +G Sbjct: 4 FGTLAAFVHSAETRSFTEAGRRLGISSSAVGKTVARLEEELGVRLFHRSTRAITLTAEGC 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + + + EL +++ KP GKLR+ +G +L+ +L F +P+I++ Sbjct: 64 RFLDRCYRIFAEFDDAKRELTQAAGKPQGKLRVGLP-QIGIHLMP-HLIAFQRTFPEIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L ++ +++ + D +R+ + + S L R+L H AAP YL + P Sbjct: 122 ELDFSDRLVNLVEEGFDAVMRIGE-LNDSRLTMRRLDGYHHRLVAAPAYLAHRGTPDRPA 180 Query: 185 ELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 EL H + T G L P + ++D P NS S+++ G Sbjct: 181 ELMDHACLRYRYPTTGKLAPWPLNGRGGAPSIDPP------QSSVTNSIDSLLEMVQAGL 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVY----------FC--YPEALKNTGKLKAFR 287 GIALLPD+IV D V TV FC +P + K+KAF Sbjct: 235 GIALLPDFIVADA---------VAAGRLTVVLDRHGQDRRDFCILWPSSRHTAPKIKAFV 285 Query: 288 NFI 290 +F+ Sbjct: 286 DFM 288 >gi|298717497|ref|YP_003730139.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361686|gb|ADI78467.1| Uncharacterized HTH-type transcriptional regulator ycaN [Pantoea vagans C9-1] Length = 302 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + + VF VA S SF+ AA++LH+++S++++ IS LE +G+ LF R R +LT Sbjct: 1 MKSEMNTIPVFVAVAESVSFSQAAQKLHVTRSAVAKTISRLEERLGVTLFNRTTRSQSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G+ + ++ + L+ ++ SGKLR++ + LGQ + L +P Sbjct: 61 AEGTLYYESCCRALDEINRAEDILEGGKLQVSGKLRVSVPVLLGQMCVSPILLTLAKQHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++++ ++ D+ + D A+R+ SSSL+ R L + M A+P YL++ EP Sbjct: 121 GLELEISFSDRPADLQDEGFDLAVRIGVLPDSSSLVARYLGSHSMVFCASPGYLRDAGEP 180 Query: 181 LSIQELDKHNLITF---GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +S EL++H + + G ++ + + + + + P + ++ ++ V Sbjct: 181 ISPDELNQHAAVAYIRSGRILKWRIKNEKDEITDLIPP------ARFTMDDMQAVRDITV 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G GIA LP ++V++ +L I++D S+ VY +P T K++ Sbjct: 235 AGGGIASLPYWLVREELATGSLTEILKDRSAGSWPVYAVWPRTPHLTLKVR 285 >gi|317048408|ref|YP_004116056.1| LysR family transcriptional regulator [Pantoea sp. At-9b] gi|316950025|gb|ADU69500.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 297 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 140/291 (48%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF A GSF A+ L +S +++ I+ LET +G L R R L LT+ G + + Sbjct: 7 MKVFVKAAELGSFAAVADMLEMSPQMVAKHIAALETRLGAALINRTTRRLHLTDIGRRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V ++E + P+G +R+ + G L + +L +P +Q++L Sbjct: 67 ERCRVVLAEVEEADAVVLNMQATPAGIIRVNAPVTFGSYTLAPFITRYLAAWPQVQVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ I+ + + A+ IR+ + + S+++ L + A AAP Y+ P + EL Sbjct: 127 LSDRIINAAEEEAEVLIRIGE-LADSAMVAWPLARYRLIACAAPSYIALHGMPRTPAELQ 185 Query: 188 KHNLITFG---DLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H + +G +P C F+ ++ RP G L+ N + ++M + G G+ Sbjct: 186 HHACLVYGYWSSAMP-CRWIFHKAGKIEEVRPEGR-----LRSNDWKALMHAALEGYGVT 239 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P+ ++K+ N LVR++ D PS ++ P A K T K++ F + + Sbjct: 240 LGPEDVLKEEINKGRLVRVLPDYSGPSRPMHVLVPSARKQTTKIRCFVDAV 290 >gi|326403986|ref|YP_004284068.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050848|dbj|BAJ81186.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 295 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 118/261 (45%), Gaps = 8/261 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD++R+F VAR G AA QL L+ +++ RQ+S LE E+G KLF RH G TLT Sbjct: 1 MNWDRIRIFLAVARHGQILGAARQLRLNHATVGRQLSALEEELGAKLFERHTGGCTLTGA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L L ++ +G +R+ LG L L +P++ Sbjct: 61 GEALLLAAERAESDFLRVGSALAGTAEDVAGVVRVGAPDGLGNYFLARELGALAARHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD I L +P Q L+ RKL + YAA YL P+ Sbjct: 121 TIQLVPLPRTFSLSRREADLVITLERPKQ-GRLVVRKLTDYTLSVYAAASYLDR-HGPIR 178 Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 QE L H +T + + ++ AT+ R I C S + M+ G GI Sbjct: 179 RQEDLAGHLFVTHVEELAYS-RALDYAATLGR-IMRRHFEC---GSVVGQMEAVRAGHGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDV 262 +L DY P L R++ D+ Sbjct: 234 GILHDYAAIGFPELRRLVPDL 254 >gi|254524616|ref|ZP_05136671.1| transcriptional regulator [Stenotrophomonas sp. SKA14] gi|219722207|gb|EED40732.1| transcriptional regulator [Stenotrophomonas sp. SKA14] Length = 343 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 21/306 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS D ++ +F V GSF AA+ L L ++++SR++ LET +G +L +R R L LT Sbjct: 1 MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR +G + L +F YP Sbjct: 61 EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ + + N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRV-GALPDSNLVARKLGSLRTQVFASPAYIERYGEP 179 Query: 181 LSIQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLS 230 L +EL H ++ G+ P+ F W + GE P + N + Sbjct: 180 LHPEELQFHRILAMRKPYHTGN-SPR----FTW--QLGENGGELRDFPVTPLMTANDMSA 232 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + V G G+ L D + K ++ + R++ P + + K++AF Sbjct: 233 LNGALVCGEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFV 292 Query: 288 NFIFLK 293 +F+ K Sbjct: 293 DFLVEK 298 >gi|254000178|ref|YP_003052241.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986857|gb|ACT51714.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4] Length = 312 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 149/286 (52%), Gaps = 7/286 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ ++ F V SFT AA L+L +++IS Q+ LE +G+KL R R +++T G+ Sbjct: 4 FEAMQAFTRVVELASFTKAALSLNLPKTTISAQVQALENRLGVKLLNRTTRHVSVTTDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++LE T+ L++++ +PSG+LR+ +G+ +L L +F YPDI + Sbjct: 64 AYYERAVALLNELEETEAALRQATSRPSGRLRVDVPGSIGRRILIPALADFTEKYPDIIL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +++ +D+ + DC IR P+ SL+ R++ ++ A P YL+ P+ + Sbjct: 124 EMGCNDRPVDLLEEGVDCVIRGGDPLD-QSLVARRVASLRFVTCATPGYLRKHGIPMQPR 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L++H I + + +F++ +R + R + N + + C+ G G+ Sbjct: 183 DLERHTGIHYFSSKTGKVYEFDFERDGERYEVSSHRK--MIFNDGDACLAACLAGLGVFQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++V++ + L ++ ++ + +Y YP+ + K++AF Sbjct: 241 AATFMVQEHIASGELQVVLGTHLSENLPLYVLYPQNRHLSSKVRAF 286 >gi|192359439|ref|YP_001984195.1| transcriptional regulator [Cellvibrio japonicus Ueda107] gi|190685604|gb|ACE83282.1| transcriptional regulator [Cellvibrio japonicus Ueda107] Length = 300 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 144/301 (47%), Gaps = 17/301 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F VA SFT AA+ L L ++S+S + LE+ +G +L R R + LT+ G Sbjct: 5 DAMLMFVRVAELASFTKAADSLGLPKASVSTGVQQLESLLGARLLQRTTRRVQLTQDGRV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +E + Q+ + SG+LR+ L +N++ L FL L+P +Q++ Sbjct: 65 FYERARDLLADMEDLEGLFQQGASNLSGRLRVDMPNGLAKNIVLPRLPAFLALHPQLQLE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC IR+ K + SSLI R L + + A+P YL + P ++ + Sbjct: 125 ISSTDRRVDVIREGFDCVIRVGK-LSDSSLIARPLGKLKLLNCASPAYLASHGSPHTLAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239 L +H L+ + + F + + E C+ + +++ C+ G Sbjct: 184 LAQHQLVHYVTTLGARSAGFEY-------VQEGETHCIAMGGNITVNNSDAYSAACLAGV 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GIA +P V+ + LV I+ D + V YP +++ F +++ + RD Sbjct: 237 GIAQIPRIGVQPYLADGRLVEILPDYCAEAMPVSLIYPARRHLPRRVQGFMDWVSEQLRD 296 Query: 297 W 297 + Sbjct: 297 Y 297 >gi|152989350|ref|YP_001348304.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964508|gb|ABR86533.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 297 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + S AA L +S S++ ++++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++EL +S P G+LR+ ++ L L+ L +F+ YPDI++ L Sbjct: 69 SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPALADFMQTYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P+ S L R+L + +P Y P ++L +H Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPGYFARHGTPRCPEDLLRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 + + +E+ W + R GE P+I V N+ + + + + GIA LPD Sbjct: 186 TCLHYRFSSTGRLEE--W--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV +++ + +P + + KL+AF +F+ Sbjct: 242 FSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV 288 >gi|78064018|ref|YP_373926.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971903|gb|ABB13282.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 307 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 149/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++I+ LE ++G +L +R R +T+TE G + Sbjct: 8 DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ ++ ++ + P G LRI+++ G++++ L +F +P + ++ Sbjct: 68 VYARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHIVAPALLDFTARFPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I S L+ R+L + A+P YL P S+ + Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDEI-SDHLVARRLAANYRVLCASPDYLARRGTPRSLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233 L H+ + + D P G R+ + ++V LS +Q Sbjct: 187 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + + L R++ D I P+ ++ YPE + + K++ +F+ Sbjct: 233 WALAGRGIVLRSIWEAAPLIERGALCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFL 291 >gi|254252634|ref|ZP_04945952.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124895243|gb|EAY69123.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 307 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 5/290 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA+ L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 6 DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRRLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G L L FL YP + Sbjct: 66 ELLRDRAIRLLADAERIESEASAHALEPHGLVRVNAPMSFGVRHLAPVLPAFLERYPHVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + SSL R+L + AAP YL P Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LNDSSLRSRRLCAVRRPLVAAPAYLDRHGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +++++H +T+ +L F A+ + +G ++ N+ I+ V G G+AL Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRHTASGEE-VGVSVQGRIRTNNADVIVPALVAGHGLAL 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V D L +M D V P + ++ F+ Sbjct: 244 QPEFLVWDALQRGELEEVMRDWKIADINVNLVTPPGMLRAARVTVLLEFL 293 >gi|299533709|ref|ZP_07047081.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298718258|gb|EFI59243.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 287 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 20/289 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F + GS AA+ L LS +++S+Q+ LE ++G L R R ++LT+ G + Sbjct: 1 MRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +T + ++ S++ +G+LR+ + + L L F+ +P +QI L Sbjct: 61 AECCRLLDDFDTLEQSVRAQSLQVTGRLRVNAPLSFALSTLAPLLARFMQRHPQLQIDLS 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D D +IRL + SSLI R+L ++ A+P YL+ P S+ L Sbjct: 121 MEDRLMDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASVAALR 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H L+ + LA VD + P + VN+ L + + V G GI LP + Sbjct: 181 GHALLNYS------------LAQVDDGLQVPSEARASVNNSLMLRELLVAGLGIGALPSF 228 Query: 248 IVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + P + + ++D VY YP K++AF +F+ Sbjct: 229 LAR--PAIAQGQLEALALQDWAEQPRHVYVVYPTQRHLLPKVRAFVDFL 275 >gi|296158939|ref|ZP_06841767.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295890814|gb|EFG70604.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 334 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R LTLT +GS Sbjct: 40 QIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTFEGSAF 99 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H+++ + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 100 LEDCQRIIHEMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 159 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P S+ +L Sbjct: 160 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPTYLSRRAAPHSLADL 218 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 HN + G + W+ D + ++S ++ + + +C+ G G+A Sbjct: 219 AHHNCLALG---ASANQQRGWMFQQDDKVVSIKVSGTMECSDGAVLHDWCLEGYGLAWRS 275 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++++ P ++ +P+ +++ F +F+ Sbjct: 276 WWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 323 >gi|325914016|ref|ZP_08176372.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325539785|gb|EGD11425.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 344 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V GSF AA L L ++++SR++ LET +G +L +R R + LT Sbjct: 1 MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR LG + L EF YP Sbjct: 61 EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+ + L N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H + F W + + + ++ L V + + + VL G Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239 Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L D + K LV R++ P + + K++AF +F+ + Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296 >gi|221067348|ref|ZP_03543453.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220712371|gb|EED67739.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 308 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 142/289 (49%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G+FT AA+ L + ++S+++ + LE + +KL R R +T+T G+ + Sbjct: 7 MRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ++ P G+LR+ + + L+ +L EF YP+IQI L Sbjct: 67 DRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPEIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ + AAP YL+ P ++L+ Sbjct: 127 VSDRTVDLISDNVDCVIRGGE-LSDQSLVARRIGNLEFITVAAPDYLQRHGVPRHPRDLE 185 Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 N+I F + + +F+ V + + N+Y+S + + G GI L Sbjct: 186 SGHRNVIYFSPVSARRYPLEFHKGGEVIEIASPAHLGINEGNAYISAI---LAGQGIGQL 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + +N L R++ED P +Y YP + K++AF +++ Sbjct: 243 SRFQIHKYLENGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWV 291 >gi|21242232|ref|NP_641814.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107655|gb|AAM36350.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 344 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V GSF AA L L ++++SR++ LET +G +L +R R + LT Sbjct: 1 MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR LG + L EF YP Sbjct: 61 EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+ + L N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H + F W + + + ++ L V + + + VL G Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239 Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L D + K LV R++ P + + K++AF +F+ + Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296 >gi|217418713|ref|ZP_03450220.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|217398017|gb|EEC38032.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ G GIA Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270 >gi|91792127|ref|YP_561778.1| LysR, substrate-binding [Shewanella denitrificans OS217] gi|91714129|gb|ABE54055.1| LysR, substrate-binding [Shewanella denitrificans OS217] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 129/277 (46%), Gaps = 18/277 (6%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR +F +A GSFT AEQ + S+S +S++IS LE ++G +L +R R + LT Sbjct: 2 DKLRGMQLFVRLADLGSFTRVAEQTNSSKSMVSKEISRLEADLGARLLHRSTRNVQLTPV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G E+ KL + Q+ + GKL+I + LG L +F+ +P+I Sbjct: 62 GEGYLVRAREILAKLADAESFAQDQQLNLRGKLKINAPMALGITDLSSLFADFMQAHPEI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ ID+ D R S+ + R L A+P YLK S Sbjct: 122 ELDIHLGDESIDLVEQGFDLGFRASSTPIDSNYVGRALTAFTYRVCASPDYLKQHPSIDS 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240 ++L HN + K + W PI G LQVNS L +M+ G G Sbjct: 182 PEDLQAHNCFVYSYFHGKNI----W------PIEDGVAVKGNLQVNSTLFMMESIKKGLG 231 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + +PD++ + D+ +V ++ D P T+Y YP Sbjct: 232 LGFIPDFVCQQAIDSGQVVEVLADAKKPKLTLYALYP 268 >gi|49084700|gb|AAT51224.1| PA3630 [synthetic construct] Length = 303 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA +G FT AAE++ +S S ISRQ++ LE + +L YR R ++L+E G Sbjct: 4 WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + S +P G LR+ + G+ + + F+ YP +++ Sbjct: 64 TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + + S L+ +L M+ A P YL+ P S Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL + N + + +ED T R G R NS +++ + G G+ L Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + + L ++E P+ V+ YP+ + K++ +++ Sbjct: 236 PDYYVIEHLRSGRLASLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284 >gi|126443372|ref|YP_001062263.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|134279056|ref|ZP_01765769.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167827719|ref|ZP_02459190.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|226197646|ref|ZP_03793221.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254193149|ref|ZP_04899584.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|126222863|gb|ABN86368.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|134249475|gb|EBA49556.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|169649903|gb|EDS82596.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|225930255|gb|EEH26267.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ G GIA Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270 >gi|322834500|ref|YP_004214527.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321169701|gb|ADW75400.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 302 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 20/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L +SS+S +IS LE VG++L R R L LT G + Sbjct: 8 MALFALVAECGSFTQAASRAGLPKSSVSHRISQLEKSVGLRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E ++ ++ PSG+LRI + LG LL EF YPD+ +++ Sbjct: 68 IHCQEMMQASERAELAIRRLRDNPSGRLRITSPAGLGATLLARMNVEFQKRYPDVSLEVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + D A+R KP Q SSLI R+L + A+P YL S Q+L Sbjct: 128 VSDALVDLVQEGFDIALRTGKP-QDSSLIGRELGHSPRYLLASPAYLAQHPSLDSPQQLA 186 Query: 188 KHNLI---TFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 H+ I + + + + ++ WL + L + C L G+GI Sbjct: 187 SHHCIAHRAWSEWVLHRGDTWHRWL-----------LPAAHTTDNLLYARECALAGAGIT 235 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LLP ++ D LVR++ + +Y YP N+ L F F+ Sbjct: 236 LLPAFLCHDEVAKGTLVRVLPEWEAEGNDLYLVYPGRKLNSPALACFIEFML 287 >gi|227114220|ref|ZP_03827876.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 301 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 139/288 (48%), Gaps = 11/288 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + +F V +GSF AAE +H+ S+++R I LE+ +G +LF R R L++T+ G Sbjct: 4 FQAMEIFMRVVDAGSFKKAAETMHVLPSTVTRSIKELESHLGARLFNRTTRALSITDVGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + + + G +RI T L +N L L F YP I++ Sbjct: 64 RYYDSCKAILRDVHAAESVAAQQKEELHGTIRIGATPSLVKNFLIPALSGFCERYPGIKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +DI + DC IR +P S L+ R+L H + A+P YL+ P +++ Sbjct: 124 DFHLGDATVDIVQNGIDCVIRTGEP-PLSRLVARRLGAFHWYICASPRYLEQHGHPTTLE 182 Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L+KH + T DF+ A T PI +IS ++Y++ V G G+ Sbjct: 183 SLNKHAAVGYTHSRTGRSTRWDFHDGAHTAAMPIAA-QISVNDTDAYVAA---GVAGLGL 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + Y+V + +LVR++ + P ++ YP++ + ++AF Sbjct: 239 IRIASYMVHQQLADGHLVRLLPGISAPLEPIFILYPQSRHLSPAIRAF 286 >gi|78066828|ref|YP_369597.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967573|gb|ABB08953.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 307 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 130/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 12 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V + ++ + + VK SG LRI+ G+ + + EF + +PD+ + L Sbjct: 72 LEDCQRVINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPDVSVTL 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 132 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 191 ARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLDGHGLAWRS 247 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V D+ LV +++ P ++ +P+ Sbjct: 248 WWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQ 280 >gi|116050260|ref|YP_790923.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585481|gb|ABJ11496.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 297 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + S AA L +S S++ ++++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++EL +S P G+LR+ ++ L L+ L +F+ YPDI++ L Sbjct: 69 SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P+ S L R+L + +P Y P ++L +H Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 + + +E+ W + R GE P+I V N+ + + + + GIA LPD Sbjct: 186 TCLHYRFSNTGRLEE--W--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV +++ + +P + + KL+AF +F+ Sbjct: 242 FSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV 288 >gi|53721886|ref|YP_110871.1| LysR family regulatory protein [Burkholderia pseudomallei K96243] gi|52212300|emb|CAH38323.1| LysR family regulatory protein [Burkholderia pseudomallei K96243] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ G GIA Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270 >gi|91783841|ref|YP_559047.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687795|gb|ABE30995.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 355 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA L LS + ++R ++ LE +G +L R R L+LTE GS Sbjct: 7 MRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGSTYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + + +P G LRI + G + L ++ + YPD+ + Sbjct: 67 ERVRHILDDLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D I + + ++ +S++ R+L T M A P YL P + L Sbjct: 127 LADRHVDLVEEGFDVGILVARHMRGASIVTRRLTTGFMTVCATPAYLAQHGTPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 H ++ + E P GE R+ + + N+ + Q+ +LG G+A+L Sbjct: 187 AHPCLS------RPAEQGGEERVFAGPDGEVRVRPTNAIVANNAEMLRQFALLGMGVAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LV ++ + P + YP L K++ F Sbjct: 241 PSYLIGRDLASGRLVPLLSNYRLPQIEITIAYPSRLHLPAKVRTF 285 >gi|78047094|ref|YP_363269.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294626581|ref|ZP_06705179.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|325928736|ref|ZP_08189906.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|78035524|emb|CAJ23170.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292599148|gb|EFF43287.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|325540904|gb|EGD12476.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 344 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V GSF AA L L ++++SR++ LET +G +L +R R + LT Sbjct: 1 MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR LG + L EF YP Sbjct: 61 EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+ + L N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H + F W + + + ++ L V + + + VL G Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239 Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L D + K LV R++ P + + K++AF +F+ + Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296 >gi|303250066|ref|ZP_07336268.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307246101|ref|ZP_07528183.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307252826|ref|ZP_07534716.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|157837301|gb|ABV82728.1| LysR [Actinobacillus pleuropneumoniae] gi|302651129|gb|EFL81283.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853036|gb|EFM85259.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306859725|gb|EFM91748.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 297 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 25/303 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF +VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T + EL+ G LRIA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTQRGELR-------GSLRIASNAAFGSTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R ++ + R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNNPDPNA-VARPLFTCHSLLVATPAYLTQHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S QEL H + ++ K ++ ++ + E S L +N +++ + + G Sbjct: 179 HSPQELANHRYLAHANVNRK---EWTFIKGGQETVLE-LTSQLTINDTGALLNFTLADGG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 IA+LP Y ++ N L ++ D P++ VY YP + + +++F +F+ F Sbjct: 235 IAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLSQAVRSFVDFLVEEFEGK 294 Query: 295 RDW 297 RDW Sbjct: 295 RDW 297 >gi|194292732|ref|YP_002008639.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG 19424] gi|193226636|emb|CAQ72587.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 302 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 7/287 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D+ RVF VA GSF AA L L ++S+S + LE +VG +L +R R + L+ G+ Sbjct: 4 FDQYRVFLQVAEMGSFIKAAHALGLPRASVSAAVQDLEAQVGARLLHRTTRQVRLSADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++E Q + SG+L + + + L+ L L +P +Q+ Sbjct: 64 QLLERLRPLLAEVEDIDQLFQAGQRQASGRLNVDMPSRIARRLVAPALPALLRRHPRLQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ + DCA+R + SSL+ R L I + A+P YL+ EP Sbjct: 124 SLGSSDRAIDLVQEGVDCAVRFGM-LADSSLVVRPLGRIALVNCASPAYLREHGEPRDPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L + +L G P+ D W + T G + + VN+ S + C+ G G+ Sbjct: 183 DLRRGHL-AVGYASPRTGRDLPWEFVDTDGSAHGADVATRVSVNNAESYIACCLAGIGMI 241 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P + V+ D L+ IM D S V YP + + +L F Sbjct: 242 QIPRFDVQHLLDTGQLLEIMPDWRPASMPVSLLYPHRRQRSQRLAVF 288 >gi|294665670|ref|ZP_06730946.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604565|gb|EFF47940.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 344 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V GSF AA L L ++++SR++ LET +G +L +R R + LT Sbjct: 1 MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR LG + L EF YP Sbjct: 61 EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+ + L N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H + F W + + + ++ L V + + + VL G Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239 Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L D + K LV R++ P + + K++AF +F+ + Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296 >gi|259416519|ref|ZP_05740439.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B] gi|259347958|gb|EEW59735.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B] Length = 304 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 10/295 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR GSFT AA+++++S S++S+ I LE + I+L R R ++LTE GSKL Sbjct: 9 LAAFAQVARDGSFTRAADRMNISTSALSQSIRSLENRLAIRLLNRSTRSISLTEAGSKLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E ++ +P G +RI + LL+ +L EF L PD+++ + Sbjct: 69 KQIEPALSMIENGMASALDADNRPEGLVRINASRVAANYLLEPHLGEFHQLCPDVELDIF 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ DI + D IRLR + S + I M A P Y P + +L Sbjct: 129 IDDSFEDIVREGFDAGIRLRDGVVDSMVAIPISPPISMAVVATPTYFAANPPPQTPDDLT 188 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +HN I F G I +F+ T + EP+ S N ++ + G G+ + Sbjct: 189 RHNCIGFRHGKNIQISPWEFDNPTTGAEILFEPKGS-FATNGDELMLSAALQGVGLVMHF 247 Query: 246 DYIVKD---NPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 D++V+ + LVR+++ P F +Y E + +L+A +F+ K R Sbjct: 248 DFVVQKQLTSGELVRVLKPWCKPFDGFDIYLPSREHMPT--RLRALIDFLTAKRR 300 >gi|238896067|ref|YP_002920803.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238548385|dbj|BAH64736.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 294 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF AAE L L S+++ I LE + ++L R R ++LT +G + Sbjct: 7 MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E ++ L ES +P G+LR+ + ++ +L +F YPDI + + Sbjct: 67 AQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR + + +SSL+ R L A+P YL+ P S + L Sbjct: 127 VSDRQVDLIQEGVDCVIRTGE-LNNSSLVARPLGHFRWVTCASPDYLREYGVPPSPEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + + + ++F ++ + P VN ++ C+ G G+A L + Sbjct: 186 QHRAVHYFSGQARRADEFRFVRHGET-FSVPVSGNAAVNETGLYIKMCLAGFGLAQLAEN 244 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IV D+ LV ++ D P V YP + ++AF ++ Sbjct: 245 IVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 290 >gi|170293884|gb|ACB13019.1| putative LysR family transcriptional regulator [Hydrogenophaga sp. PL2G6] Length = 319 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 16/290 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LHL+++S+++ I LE + +KL R R + +T +G+ Sbjct: 4 FDAMQAFVRVVDAGSFTKAAETLHLNKTSVTQLIQQLEARLRVKLLNRTTRKVQVTAEGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + L ++ P G+LR+ L + +L L F YPDIQI Sbjct: 64 AYYERVVRLLADLDDAETSLSDARTAPRGRLRVDVPSPLARFVLVPALSGFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC IR + I SLI R + + + AYAAP YL+ P + Sbjct: 124 DMGVSDRIMDLISDSVDCVIRGGE-ITDPSLIARLVGELPIKAYAAPGYLQRHGTPEHPK 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +L+ H ++ F G + P M+ + R G ++ N+YL+ + Sbjct: 183 DLEHSHHRVVGFLSTRNGRVPPFSMQLGDGERIDVR--GHHVVAIDDGNAYLAA---GLA 237 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G G+ LP Y+ +D+ LV + ++ +Y YP + KL+ Sbjct: 238 GLGVLRLPTYMARDHVARGELVTLFDEWSFEPMPLYLAYPPNRYVSAKLR 287 >gi|330963660|gb|EGH63920.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 301 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 14/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ + Sbjct: 7 MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + EV + ++ +++ +P+G LRI + G LL L F +PD+++ L+ Sbjct: 67 QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D AIRL QSS LI R L + AAP YL P ++L Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAPTRPEDLR 186 Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 HN + F P E W T P GE + + N+ + Q G G Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + +LPD +V+ + LV ++ D P + Y + KL++F F Sbjct: 243 VVMLPDALVQRDLQDGRLVALLPDYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294 >gi|289662995|ref|ZP_06484576.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 344 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V GSF AA L L ++++SR++ LET +G +L +R R + LT Sbjct: 1 MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR LG + L EF YP Sbjct: 61 EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+ + L N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H + F W + + + ++ L V + + + VL G Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239 Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L D + K LV R++ P + + K++AF +F+ + Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296 >gi|332524256|ref|ZP_08400480.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332107589|gb|EGJ08813.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 304 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS T AA+ ++ + + R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIESFVAVATKGSLTAAAQAEGVAPAVVGRRIDALEERLGVKLMLRTTRRITLTHEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +V L + + VK SG LRI G+ + + F+ +PD+ + L Sbjct: 66 LEDCQKVLADLGNAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVPSFMAEHPDVSLSL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +DI + DCAIR+ + SSL+ +L A+P YL+ P + +L Sbjct: 126 NLSDRVVDIVNEGFDCAIRVGD-LADSSLVSVRLADNRRLCVASPRYLQRAGVPRTPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H +T L + W VD RP G S QV + +C G G Sbjct: 185 ARHECLT---LSSDASQTRGWAFLVDGQVQHLRPTGRLDCSDGQV-----LHAWCRAGLG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA + V+ + LV ++E+ P +Y +P+ +++ + +F+ Sbjct: 237 IAWRSTWEVQQDIASGQLVAVLEEFSAPPNGIYAVFPQRRLLPLRVRLWIDFV 289 >gi|238911787|ref|ZP_04655624.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 302 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 143/292 (48%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + ++ V GSF AAE L L +++R + LE ++G+KL +R R +++T++G + Sbjct: 7 EAMNIYVNVVEQGSFIRAAEVLELHCPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +L+ + L S+ P G+LR+ I L + ++ L +F YPDI+I Sbjct: 67 FYQRCLSLLSELDDVR-RLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIV 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DC IRL + + SS + R+L T M AAP YL P SI E Sbjct: 126 LGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184 Query: 186 LDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241 L K H + F ++ W TVD I +I S + V++ + + + G G+ Sbjct: 185 LMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKIPSSILVDNSEAFLSCGLAGLGVLH 242 Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P +I L I+ D P V YP+ K++ F +++ Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292 >gi|227113957|ref|ZP_03827613.1| Regulatory protein, LysR family (Azotobacter vinelandii DJ) [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 298 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 143/285 (50%), Gaps = 9/285 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + I+ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKSIARLEEKLGVRLFHRSTRSITLTAEGSLFLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL ++S P G+LR+ ++ L +L+ L +F+ YP+I++ L Sbjct: 69 SRRILAEIEAAELELSQTSAVPRGRLRV--SLPLVSSLVLPVLGDFMHKYPEIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R P+ S L R+L T AAP YL P + +L +H Sbjct: 127 DRMVDVIEEGFDAVVRTGDPVD-SRLTARRLGTFRFLVVAAPEYLAQSGCPQTPADLMQH 185 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + P + W L P + + N+ + + + + G GIA LPD+ Sbjct: 186 ACLHY--RFPNSGKLEPWALRLPPGEPELPLPTSMICNNIETRVCFALQGLGIAYLPDFS 243 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ L I+ D + S Y +P + + K++A +F+ Sbjct: 244 IRELLAEGQLQPILTDYVERSGVFYVLWPSSKHPSPKVRALVDFL 288 >gi|115352689|ref|YP_774528.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282677|gb|ABI88194.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 294 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 11/282 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L LS S+I ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +++ + EL S+ P G+LR++ TI LL L +F+ YP+I++ + Sbjct: 69 CRRVIAEIDAAEQELTHSAEAPRGRLRVSLPTIG---TLLLPLLADFMAAYPEIELDIDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R +P S L R L H A+P YL+ P + +L + Sbjct: 126 SDRLVDVVEEGFDAVLRTGQPTD-SRLSSRLLGHFGQHLVASPDYLERHGTPRTPTDLAR 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W R P + V NS + + + G GIA LP++ Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRASRSGTPPAVPVSMVSNSAETRLCFARRGLGIACLPEF 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ D+ L ++ + I Y +P T KL+AF Sbjct: 243 FVRDALDDGTLRAVLAEHIVSRTPFYVLWPSGRHPTPKLRAF 284 >gi|300312300|ref|YP_003776392.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075085|gb|ADJ64484.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 24/294 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + WD +R F ++R GS + +A L + S+++R + LE + +KLF R ARG LT Sbjct: 22 TLQWDDVRYFLTLSREGSLSASARVLKVEHSTVARHVGNLEKTLRVKLFDRLARGWVLTT 81 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLL 118 +G++L S+ +LE L +++ SGK+R++ L + L L F Sbjct: 82 EGAEL----SKQAEQLEVEMHSLWRAALANTTLSGKVRVSAPPILMSDFLVPRLPAFQEK 137 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YPDI++++I + + +D++ AD A+R+ +P+ S L+ R L + Y P +L+ Sbjct: 138 YPDIELEVIGEARGVDLTRGEADIALRMGEPV-SPLLVARMLCNVSYSVYGIPAWLERPE 196 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVL 237 S LD+ + C + WL + VD+ R L+ N ++ + Sbjct: 197 SERSFIGLDQES---------PCRQK-AWLESQVDQ-----RRYALRTNDIRAMCHAAMS 241 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ALLP ++V ++ LV I P +Y ++ +++A +F+ Sbjct: 242 GIGLALLPRFMVAEDTRLVAIPMPETPPPCPLYLVMHSDVRRAPRIRATADFLI 295 >gi|295688180|ref|YP_003591873.1| LysR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430083|gb|ADG09255.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC 21756] Length = 295 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 7/281 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F VV R GS + AA L ++Q S++R I LE VG KLF R RGL+ T++G Sbjct: 7 WDLFRTFAVVLREGSLSGAARVLGMTQPSVARHIDALEAAVGAKLFVRSQRGLSPTDRGL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L R +E + + SG +RI + +G L L +P + I Sbjct: 67 AL-RSHAESLVATSAALLRAASGTEGASGTVRITASEVVGAEHLPPILAALRRAHPALAI 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L N D+ AD A+R+ +P Q +L+ RK+ + + +A YL P + + Sbjct: 126 ELVLSNAVSDLLQRQADIAVRMVEPTQ-QALVARKVGAVTLGFHAHRDYLAARGVPRTAE 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H+LI P + + + R L+ +S L+ + G GI + Sbjct: 185 DLLAHDLIGVDTETPAVRAVLSRMPGLTR-----EAFGLRTDSDLAQLAAIRAGYGIGVC 239 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 I + +P LVR+ D+ + ++ E L+ + +A Sbjct: 240 QVEIARRDPALVRVTPDLFSFELPLWVVMHEDLRGGARYRA 280 >gi|158340510|ref|YP_001521504.1| LysR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310751|gb|ABW32365.1| transcriptional regulator, LysR family [Acaryochloris marina MBIC11017] Length = 296 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 135/284 (47%), Gaps = 8/284 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F V +GSFT A L+ ++ +SR +S LE +G++L R R L +TE G Sbjct: 2 ESLEIFRAVVDAGSFTAAGGVLNKDKAHVSRVVSRLEKRLGVQLLKRSTRRLNITEIGRD 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + LE T+ + + +P G LR+ + G + + E+L YP+++++ Sbjct: 62 FYERACGILAALEETEASIAHAQGEPRGVLRVTAGAEFGPMRVNYWIAEYLKRYPEVRVE 121 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +D+ + D AIR+ P+ S L R L I YA+P Y EP S++ Sbjct: 122 ADFSDRIVDVIHEGIDVAIRV-GPLVDSELSVRPLGEIRYGLYASPAYAHTRGEPKSLKA 180 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+LI F P+ + + +R C+ +N+ L+ + G GIALLP Sbjct: 181 LAQHSLIMFA---PRGKPVWPMVRGKEREDVTLEALCV-INNNLAARELAADGLGIALLP 236 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + L R++ED +V + + T K++AF Sbjct: 237 HFHAAPQLAQKRLTRVLEDWERVPVSVSALFTSSRYMTPKVRAF 280 >gi|94313468|ref|YP_586677.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357320|gb|ABF11408.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 304 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 141/293 (48%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF + SFT AA+ L L +SS++ + LE+ +G++L R R ++ T G Sbjct: 5 DAMRVFTRIVERRSFTAAAKDLDLPRSSVTDAVKQLESRLGVRLLQRTTRHVSPTLDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E + +S P G LR+ L + L L FL +P I +Q Sbjct: 65 YFQRCLRLLADFEEAEAAFAGTS--PKGVLRVDVQGQLARRFLFPALPAFLAQHPGITLQ 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC +R+ +P Q S ++ R++ + AAP YL P+SI+ Sbjct: 123 ISEGDRLVDLVREGIDCVLRVGEP-QDSEMVARRVARLAQLTLAAPPYLARHGSPVSIES 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H ++ F G L+P + V P + + V+ S++ C LG G Sbjct: 182 LGNHRMVGFRSTLTGGLLPLEFMTGGVRSEVMLP------APVSVSGAESLVAACRLGLG 235 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +P Y V+++ LV ++ ++ P+ +V YP + + + +++ F +++ Sbjct: 236 LIQVPRYHVEEDLLRGTLVSVLSEIPPPTMSVSLLYPRSRQLSQRVRVFLDWV 288 >gi|134292115|ref|YP_001115851.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135272|gb|ABO56386.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 305 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 12/303 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA + +S +++SR ++ LE +G +LF R +R L LTE G Sbjct: 6 DFEGLAMFAKVAEEGSFAAAARSMGVSVATVSRGVARLEGRLGGRLFNRTSRQLALTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L ++Y E + +E +V+P G +R+A + G + L F YP++ Sbjct: 66 RTLCEKAGDMYRHAEEAESAAREMAVQPRGLVRLAVPMSFGLRWVAPLLPAFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D A+R+ + SSL+ R+L + + A+P YL P Sbjct: 126 IDLHLSDASVDLIADGFDAALRI-AALPDSSLVARRLCAVTQYVVASPAYLAREGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241 ++L +++ + D W T D EP + L+V + +++ + G I Sbjct: 185 RDLAGRACLSYAY---RAHSDV-WRFTNDAGEEEPILPNGPLRVTNSDALLPTLLEGLAI 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296 LP++I + + L I+ D +YF P A K+ A +F L Sbjct: 241 GELPEFIAGEYLADGRLEAILTDWSLTKGGLYFITPSARARPAKIAALSDFFAEHLSEPS 300 Query: 297 WKF 299 W++ Sbjct: 301 WRW 303 >gi|145589741|ref|YP_001156338.1| LysR family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048147|gb|ABP34774.1| transcriptional regulator, LysR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 291 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 138/282 (48%), Gaps = 6/282 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S +WD L+ F +A+ G AA L ++ +++SR+I LE E+G++LF R+ G LTE Sbjct: 3 SMNWDHLQYFLALAKDGRLIVAARSLGVNHTTVSRRIQALEREMGVQLFSRNNLGFELTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + +V ++ + + + SG +R+ T G ++ L E +P Sbjct: 63 AGMQLQNIAHKVEQQINGISKNIGSENTEISGTVRVGATEGFGTFIVGPILYELSKKFPR 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I L+ + +++S AD AI L++P + L+ KL + YA+ YL + L Sbjct: 123 LSIDLLSLPRIVNLSRREADIAITLQRPTRGPYLVT-KLRDYELKLYASNEYLASNPAIL 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 S +LDK I++ D + E L+ +D I +P+ + S S +Q +G G+ Sbjct: 182 SRGDLDKQTFISYVDDLLFSKE----LSYLDE-ICKPKQISFRSTSIQSQLQAARVGLGV 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 A+LP ++V+ L I+ I + + P K ++ Sbjct: 237 AVLPSFMVQAQDGLQEILPKDIRIIRSFWMMMPNEYKKVDRM 278 >gi|157376742|ref|YP_001475342.1| hypothetical protein Ssed_3610 [Shewanella sediminis HAW-EB3] gi|157319116|gb|ABV38214.1| conserved hypothetical transcriptional regulator, LysR family [Shewanella sediminis HAW-EB3] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 15/277 (5%) Query: 5 WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DKL+ VF V + GSF+ AA ++ + + + I LET +G KL R R +LTE Sbjct: 1 MDKLKSMQVFVNVVQHGSFSRAAINFAVTSTMVGKHIKFLETHLGTKLLNRTTRKQSLTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + + LQ KP G++RI + + G LL + +FL YPD Sbjct: 61 AGQLYYLECQRILDDIAEAENSLQALENKPKGRIRINSPVTFGNILLAPIVADFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L LDN ID D D IR+ + + +SSLI R++ M A+P YL R PL Sbjct: 121 INVELTLDNDLIDPLHDPVDVVIRIGE-LANSSLIARQIAVYEMMFCASPDYLARHRVPL 179 Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 S+ +L H + F GD+ + +D + + S L NS ++ + G+ Sbjct: 180 SLNDLASHQCLGFSYGDI------QSSLALRIDTSAFDTQHSRLTSNSGQALKVAALKGT 233 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 GI L P ++ + +L+ I+ + + ++ Y Sbjct: 234 GILLQPRLLLSEELGRGDLIEILSEQVPSPTPIHLMY 270 >gi|161521329|ref|YP_001584756.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345379|gb|ABX18464.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] Length = 328 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 135/274 (49%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L F VAR +FT AA Q+ +SQS++SR ++GLE +G++L R R ++LTE G Sbjct: 32 DFNDLVGFMTVARERNFTRAAAQMGVSQSALSRTVAGLERRMGLQLLTRTTRSVSLTEAG 91 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L+ + +PSG +RI TT ++ + L+ L YP+++ Sbjct: 92 DRLLSAIAPRFEEIEAEVDSLRAMTNQPSGTVRITTTDYAAKSYVWPRLQSLLRQYPELK 151 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L+ D DI D D +RL + + R + M +P YL++ + Sbjct: 152 IELVNDYGLSDIVADRYDIGVRLGDQVAKDMVAVRIAPDMTMTVVGSPSYLQSKPHARTP 211 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L HN I +P W R + R+ L N+ +++ + G G+A Sbjct: 212 QDLTLHNCINL--RLPTRESLLPWELRKGRRELKVRVEGQLTFNNVYQMVEAALGGFGLA 269 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273 +P +V+D R ++ED P+F + Y Sbjct: 270 YVPKDLVEDKVRAGRLCWVLEDWY-PTFVGHHAY 302 >gi|293394408|ref|ZP_06638707.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291423097|gb|EFE96327.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 305 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA +GSF AAE L L S+++ I LE + ++L R R + LT +G + Sbjct: 7 MQVFIRVAEAGSFVRAAETLSLPASTVTSTIKNLERYLQVRLLNRTTRRVRLTPEGLQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E T+ L +S +P G+LRI + ++ NLK+F LYPDI + + Sbjct: 67 AQCREILSLIEHTESSLTDSVRRPQGRLRIDMPGGIAHFIVMPNLKDFYRLYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR + + S+L+ R L A+P YL+ P + L Sbjct: 127 VSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWVTCASPDYLREYGIPEMPEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H I + + + + + + P VN ++ C+ G G+A L + Sbjct: 186 QHRAIHYFSGSGRRTNELRFTRGTEM-LSVPVEGDAAVNETGLYIRLCLEGFGLAQLAEN 244 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ +N LV ++ D PS V YP + ++AF +++ Sbjct: 245 VISENLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290 >gi|293395485|ref|ZP_06639769.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422169|gb|EFE95414.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 331 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 7/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +LRVF VA GSF A+E L + ++++S I LE E+G +LF+R R + LT G +L Sbjct: 32 RLRVFIQVADVGSFVRASELLLMPKTTVSAAIQQLENEMGARLFHRTTRRVQLTGDGERL 91 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + Q + G+L + + + ++ L +F L YPDI++ L Sbjct: 92 LEHARSLLDDVAALDNLFQPAGSPIGGRLAVDVPSRIARRIIVPALPDFFLQYPDIELFL 151 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ID+ + DC +R+ + SSLI L + M A+P YL+ P ++L Sbjct: 152 SSSDRTIDLVQEGMDCVVRV-GSLSDSSLISHTLGQLSMVNCASPTYLQRHGTPQDNRQL 210 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 H ++ + P + W + I E + S + VN+ + + C++G G+ +P Sbjct: 211 ADHWVVGYAQ--PSLLSANCWQWRHNGEIVEHTLRSKVTVNNVENYIGSCLVGMGLIQIP 268 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + ++ D+ +LV ++ P+ + YP + T + AF ++ Sbjct: 269 RFDIQHFLDDGSLVEVLPQARAPAMRISLLYPHRRQRTARFSAFADW 315 >gi|89072784|ref|ZP_01159341.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] gi|89051306|gb|EAR56761.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] Length = 301 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 141/288 (48%), Gaps = 11/288 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + VF V + G F AAE S S +S++I+ LE+ +G++L R R + LT +G Sbjct: 7 FDGITVFVQVVKCGGFGAAAEVTGHSSSYVSKEIAKLESRLGVRLLNRTTRSIALTPEGK 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ + E + E+ +S+++P G L+++ + G+ L +L YP+ + Sbjct: 67 TYYQECVQLINDAEQSVAEITKSTIEPKGTLKVSCPVWFGKYYLADVFTTYLSRYPEATL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +K ID+ D D IR + SSLI +++ + + A+ YLK+ Sbjct: 127 DLDMSDKSIDVIADGYDLVIRATAKLDDSSLICKRIYSSRICTVASKQYLKDYGYLQHPS 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 EL H+ + +L + FN DR + + Q V+S + M ++ +G+ + Sbjct: 187 ELSDHSCFCYSNL-----KKFNVWGYRDRVGNKTLVDVHQRVSSNNTEMSLALVNNGLGI 241 Query: 244 --LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P++ ++ + LV + +D I P VY YP + K+K F Sbjct: 242 IRIPEFYIETQLQSGELVLLFDDYIPPQLDVYALYPTRKHLSAKVKCF 289 >gi|254498468|ref|ZP_05111197.1| putative LysR family transcriptional regulator [Legionella drancourtii LLAP12] gi|254352323|gb|EET11129.1| putative LysR family transcriptional regulator [Legionella drancourtii LLAP12] Length = 313 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 9/297 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +F+ V GSF AA++ +S S IS++IS LE+++ I+L R R L LTE Sbjct: 3 NFNISDALTLVCVVDEGSFAAAAKKAGVSSSVISKRISRLESQLRIQLIQRTTRSLALTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + ++ ++ E+ + PSG LRI + GQ L + +FL LYP+ Sbjct: 63 SGKIFYERCQKIKTEISEATAEVLQHHQTPSGLLRINVPMSFGQVHLVPAVNDFLELYPE 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQI+LIL ++ + D AI ++ + L RK+ Y AP Y K P Sbjct: 123 IQIELILGSQYASFIHNGLDVAIFIKDLPNTHLLKSRKITVRSKGVYGAPSYFKRFGLPK 182 Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +L HN + + G+ + + F W + I P L++NS ++ + Sbjct: 183 IPGDLVNHNCLIYQAEPGNQL-GIGQRFEWHFCHEQKTIIVPVAGNLRINSSQGLVTAAL 241 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+A L ++V + N +LV ++ED ++ YP K++ F +F+ Sbjct: 242 AGNGVAKLSSFMVTEEIKNGSLVSVLEDYCERDIDIHAVYPNQQFLPSKVRVFIDFL 298 >gi|254183311|ref|ZP_04889903.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|184213844|gb|EDU10887.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQYLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ G GIA Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270 >gi|258623586|ref|ZP_05718581.1| transcriptional regulator, LysR family [Vibrio mimicus VM573] gi|258584132|gb|EEW08886.1| transcriptional regulator, LysR family [Vibrio mimicus VM573] Length = 300 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ GSFT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGSFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ P+++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPEVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S I RKL + M A P YLK C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTDVAMSTLATPAYLKQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHNTTQQTIDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + ++ LV + D PS Y + +LK F F Sbjct: 245 FYCQEEIARGALVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|294012055|ref|YP_003545515.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292675385|dbj|BAI96903.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 292 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 144/297 (48%), Gaps = 24/297 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDWD +RVF VAR+ AA L + ++ISR+++ LE +G +LF A TLT Sbjct: 2 FDWDDIRVFLAVARTRKIAPAARALGIDATTISRRLARLERALGPELFELGAGERTLTAH 61 Query: 63 GSK-LHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLL 117 G LH S +E+ + E + SG++R++ G +L L +F Sbjct: 62 GQALLHHAES-----IESAALAAMEEATGREHHLSGQVRLSVAEGFGTWVLAPGLADFSR 116 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P I++ LI + ++ S AD A+ L +P Q L R++ +H YA+P YL Sbjct: 117 RHPGIRLDLITASGFLNPSKREADMAVMLARP-QRGRLSVRRMGDYRLHLYASPAYLAQA 175 Query: 178 REPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P S +L H L+ + +P+ + + ++L V+ + E + +N MQ+ Sbjct: 176 GTPGSTADLRGHVLVGY---VPEFIFSPELDYLDEVEAGL-EASLRATSIN-----MQHR 226 Query: 236 VL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ G+GI +LPD+I +P L+ +M D + + + LK ++ A ++ Sbjct: 227 MIAEGAGIGVLPDFIAGRDPALMPVMADRVEIMRSFWLVTHGDLKKLPRIAAVATWL 283 >gi|167839456|ref|ZP_02466140.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 126/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMRVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLADHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNEVD-PSLIARRLGTCRSVLCASPGYLAEHGAPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ + G G+A Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIKGGGVA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPVRAGALVRVLPDCAAPDLGIYAVY 270 >gi|295684224|gb|ADG27456.1| LysR-like protein [Klebsiella pneumoniae] Length = 303 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+I+ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + DI + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKARGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +EL H+ I G + P + R + +VNS + + Q + Sbjct: 182 KELSDHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSPIMVKQLALDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L + K N LV I+++ F VY Y + + AF +F F+K Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDF-FVK 290 >gi|167901542|ref|ZP_02488747.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] Length = 294 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ L +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + PR + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFAIRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + L +++ I T + +P + KL+AF +FI Sbjct: 242 FSVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288 >gi|171060831|ref|YP_001793180.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778276|gb|ACB36415.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 310 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 18/279 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA+ GS T AA ++ + I R+I LE +G+KL R R ++LT +GS Sbjct: 7 QIEAFVAVAQKGSLTAAAAGEGVAPAMIGRRIDALEARLGVKLMLRTTRRISLTHEGSAF 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG +RI G+ + + F+ L+P+++I L Sbjct: 67 LEDCNRMLADLANAEASVSAGGVKASGLIRITAPGGFGRRHVAPLVPRFMALHPEVRISL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ + DCA+R+ + SSLI +L AAP YL P EL Sbjct: 127 NLSDRVIDMVNESYDCAVRVGD-LPDSSLISVRLADNRRRCVAAPAYLARAGMPTHPNEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H +T L + + W TVD RP G R+ C + +CV G G Sbjct: 186 MRHECLT---LSSEASQSRGWAFTVDGEVAHLRPPG--RLDCTDGQ---VLHAWCVAGLG 237 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 +A + V+ + LV +++ P +Y + A Sbjct: 238 LAWRSSWEVEGDLRSGRLVSVLDTFAAPPNGIYAVFAHA 276 >gi|114706251|ref|ZP_01439153.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Fulvimarina pelagi HTCC2506] gi|114538112|gb|EAU41234.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Fulvimarina pelagi HTCC2506] Length = 293 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 31/300 (10%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F VAR+G AA +L L+ +++ R++S LE ++G KL +R G LT Q Sbjct: 1 MNWDDARIFLAVARAGQILGAARRLELNHATVGRRLSALEADIGAKLLHRRPNGCELTAQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + E+ + V SG +RI G + L L +P++ Sbjct: 61 GRAFLAQAELMEAATISARAEIGNADVSLSGTVRIGAPDGFGTSFLAPRLWRLAERHPNL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + IS AD A+ + +P + L+ KL + YAA YL+ EP Sbjct: 121 TIQLVPVPRAFSISRREADIAVTVERP-EHGRLVAGKLTDYALGFYAARSYLERHGEPEK 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----------SCLQVNSYLSI 231 + +L H L+ +ED + PR+ S +++S + Sbjct: 180 LGDLASHRLV-------GAVEDLLY---------SPRLTYFADLLQEWPSRFEISSAMGQ 223 Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ G+GI +L + + LVRI+ D I ++ + + E++++ ++ A FI Sbjct: 224 LEAVAAGAGIGILHCFSAQRRSELVRILPDERIDRAY--WLVFHESVRDVARIAAVAEFI 281 >gi|170728449|ref|YP_001762475.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813796|gb|ACA88380.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 303 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 146/294 (49%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA ++ + +S+ISR+++ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + ++E + ++ + SG LR+A + Q L+ F+ LYP+I+ Sbjct: 63 ALFFQHCTSISDEIEAAKATIENTHNDVSGSLRVAIPVSFSQELIANLCSSFMRLYPNIE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + ++++ + + D AI+ P+QSS L+ R L+ A+P YLK P + Sbjct: 123 LDVQFTDREVGLVGEGYDIAIKY-GPLQSSDLVARLLLERQPILVASPGYLKANGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL +H+ I G + P + + R + +VNS + + Q + Sbjct: 182 QELMEHSGILLGTSRSAPIWPLGKGARKTMVSFKRKV--------RVNSAVMVKQLVLDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + + K+ + +LV ++++ VY Y + + F +F Sbjct: 234 FGIAMLSNSVCKNELASGSLVPLLQEWPIEPIKVYGVYSSRRQLAANISVFLDF 287 >gi|157373771|ref|YP_001472371.1| carbonate dehydratase [Shewanella sediminis HAW-EB3] gi|157316145|gb|ABV35243.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3] Length = 315 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 21/279 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA+ L+L +S++SR++ LE ++ +KLF+R +R +TLT GS Sbjct: 4 EDISLFHRIVETGSLVDAADLLNLPKSTVSRRLQTLEDDLKVKLFHRQSRSMTLTASGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIAT-TIDLGQNLLQGNLKEFLLLYPDIQI 124 + T + LE T +EL ++ + G LRI + Q+++ G + EF+ PD+ + Sbjct: 64 FYDKTQSILGDLEQTMVELTDTEAEIGGHLRILIFPVPQLQDIVTG-IFEFMDHNPDLTV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +LI+ + D+ + D A + + ++ R++++ +H A+P YL P+ + Sbjct: 123 ELIVSTEPQDMIRNKIDLAFMVEDAFNENEMVAREMLSEVLHFVASPEYLAKAGTPVLPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----GSG 240 EL HN I F P FN + P G R ++ N L+ ++ C+ G G Sbjct: 183 ELSNHNSILF--RYPNG-RIFNEV-----PFGNDRTIAVKGNLCLNSIELCLQATLSGRG 234 Query: 241 IALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYP 274 IA LP +Y+ + L + EDV Y YP Sbjct: 235 IAFLPIEATHEYV--ERGELTMLFEDVEPYIGKCYLVYP 271 >gi|325982624|ref|YP_004295026.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212] gi|325532143|gb|ADZ26864.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212] Length = 307 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 143/289 (49%), Gaps = 6/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F V +GS + AA+++ +++S +SR++ LE +G++LF+R R + LT+ G Sbjct: 4 FENMNAFVRVVEAGSISGAADRMDVAKSVVSRRLKELEAHLGVELFHRTTRQMNLTDSGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + + + + G L++A + G L + EFL +P+I Sbjct: 64 AFYQQSVRILADILEAEHATSQFHGALKGNLKVAVPLSFGLMHLGPAISEFLQAHPEITF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L +++ +DI + D AIR+ + SSLI R+L I A+P YL EP S + Sbjct: 124 DLDFNDRQVDILTEGFDLAIRI-ASLPDSSLIARRLAPIQAIMCASPSYLARMGEPQSPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL H + + +LI E++N + I L+ ++ + V GSGI L+ Sbjct: 183 ELIHHRCLAY-NLISN-FENWNLYNIEGQLIRTKIAPYLKASNGEFLRDAAVAGSGIILM 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV + L+ ++ + + Y YP+ + +++AF +F+ Sbjct: 241 PTFIVYKEIERGALIPLLTQYTSSRLSAYALYPQTRHLSQRVRAFVDFL 289 >gi|226942158|ref|YP_002797232.1| Transcriptional regulator, LysR family [Laribacter hongkongensis HLHK9] gi|226717085|gb|ACO76223.1| Transcriptional regulator, LysR family [Laribacter hongkongensis HLHK9] Length = 301 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 24/300 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +R F V GSF+ A+ L L +S +SR+I+GLE+ +G++L R R L LTE G Sbjct: 3 DLNDMRYFAEVVERGSFSAASRALGLPKSRLSRRIAGLESRLGVRLMQRTTRRLALTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +R + V + + + +P G +R++ + L Q +L +L FL YP ++ Sbjct: 63 ELFYRHCAVVRDEADMAAETVARLQAEPRGVVRVSCPVTLAQTMLGPHLPAFLAAYPQVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + N+ +D+ + D A+R+R + S SL+ ++L H A+P L P S Sbjct: 123 LDMRVSNRAVDLVEEGLDVALRVRPTLADSGSLVVKRLGVAHTVLVASPEQLTRQGRPRS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235 EL + + + + + WL + P G+ PR L + LS+ Sbjct: 183 PDELVRLDTVAMSAVDGRT----TWL--LQGPDGQDYPFQHTPR---LLADDLLSLRFAV 233 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 + G G LPDY+ +++ R+ +++ P + ++ +P ++ F +F+ Sbjct: 234 LAGVGATYLPDYLCREDVMAGRL--ELVLPGWAPCPGIIHAVFPSRRGQVPAVRVFLDFL 291 >gi|186471815|ref|YP_001863133.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184198124|gb|ACC76087.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 295 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 142/292 (48%), Gaps = 13/292 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + V+ V +GS + AA + +S +S+SR I+ LE + G +L R R L +T++G Sbjct: 4 FEAMSVYVRVVEAGSLSAAARAIPMSLTSVSRHIAALEDQFGAQLLRRTTRNLAMTDEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L+ + +++ L + SG+LRIA LG+ L+ L FL ++PD+ + Sbjct: 64 ILYDRAKSILGEVDELGSALSAGRGRLSGRLRIAAPNLLGRLLIAPLLPRFLAMHPDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L ++ ++I + A+R+ + + SSL+ RKL I M AAP YL P Sbjct: 124 DLMLVDRVVNIVEEGLHLAVRVGR-LPDSSLVARKLDDIEMMVCAAPSYLARRGTPRRPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241 +L +H+ + F D F AT R+S L +NS +++ + G+GI Sbjct: 183 DLRRHDCLVFSDAAGPVDWRFQSGAT------RTRVSVTGRLWMNSLDALVSAALEGAGI 236 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + V D L +++ P+ V+ + + K++ F +++ Sbjct: 237 VRAPAWQVAAHIDAGRLQPVLDKFAPPATPVHVLFERTKLASPKIRTFVDYL 288 >gi|330965855|gb|EGH66115.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 303 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 9/301 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V RSGSF AA QL + +++SR++ LE ++G +L R R L LT+ G Sbjct: 4 DLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRVQHLEVQLGTRLLQRSTRKLVLTQAG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + L + +L +PSG++RIA D + +FL YP +Q Sbjct: 64 EHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYPRVQ 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLS 182 ++ +L ++ D+ D D A R P+Q S + R+L+ A+P YL P S Sbjct: 124 LEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATYGMPDS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 ++ L H+ ++ P + + L D + + +I+ N+ ++ + + G GI Sbjct: 183 LESLQAHDCVSAA--YPGGVTTWRMLGP-DAKMHDVQIASRFNANTAQALRKATLAGLGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 ALLP +++ N LV ++ S ++ YP + + AF + K R Sbjct: 240 ALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLRGNA 299 Query: 299 F 299 F Sbjct: 300 F 300 >gi|289670149|ref|ZP_06491224.1| LysR family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 344 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V GSF AA L L ++++SR++ LET +G +L +R R + LT Sbjct: 1 MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR LG + L EF YP Sbjct: 61 EAGSVYHEHCQRISRELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+ + L N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H + F W + + + ++ L V + + + VL G Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239 Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L D + K LV R++ P + + K++AF +F+ + Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296 >gi|255263828|ref|ZP_05343170.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] gi|255106163|gb|EET48837.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] Length = 295 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 137/274 (50%), Gaps = 9/274 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F +V +G + AA++L +++S++SR+IS LE G L R LT G + Sbjct: 5 EDLRIFGIVVETGGISKAAKRLGIAKSAVSRRISLLEERYGAILIDRTPGVWELTATGKE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ +V +++ + + +S SG L ++ + G N L L F +P+IQ+ Sbjct: 65 LYQRALQVVGEMDGIEADFVNTSANHSGPLSVSVPREFGINFLSNALLAFKAKFPEIQLT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D++ ID+ + D AIR+ I S+ R + T++ +A Y K P + + Sbjct: 125 IDFDDRSIDLDRENYDFAIRITGNIIDSAGATR-IGTVNHRLFAGSQYFKTHAMPTCLDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALL 244 L HNL+ FG + + F + + EP L NS +++ + G GI+ L Sbjct: 184 LRDHNLLYFGS-ARRTVWHFRDAKDKHQELEFEP---FLNSNSGTFLLKATIGGHGISRL 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 PD+I + +LV ++ D++ P + ++ + E Sbjct: 240 PDFIASEAVPQGDLVEVLPDLVMPEWGIFLVHSE 273 >gi|189023320|ref|YP_001934088.1| LysR family transcriptional regulator [Brucella abortus S19] gi|260546339|ref|ZP_05822079.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038] gi|189018892|gb|ACD71614.1| Bacterial regulatory protein LysR [Brucella abortus S19] gi|260096446|gb|EEW80322.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038] Length = 297 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSFT AA QL +SQS++S+ I LE VGI+L R R ++ TE G +L Sbjct: 9 LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ E +PSG + ++ Q++L L+ FL +PDI I+L Sbjct: 69 AQVGPALAEIASGFAQIGELRERPSGTVLLSADEYAIQSVLWPALERFLAEFPDIHIELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D D+ + D +R K + + R I M A P +L+ +P Q+L Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H+ I +P E F W T R + RI+ L S ++Q C G G+A L Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACFAGFGLAYL 244 Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P DY + ++ LV ++ D + YP ++ L A Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289 >gi|313110787|ref|ZP_07796642.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|310883144|gb|EFQ41738.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 297 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + S AA L +S S++ ++++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++EL +S P G+LR+ ++ L L+ L +F+ YPDI++ L Sbjct: 69 SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPALADFMQAYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P+ S L R+L + +P Y P ++L +H Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 + + +E+ W + R GE P+I V N+ + + + + GIA LPD Sbjct: 186 TCLHYRFSNTGRLEE--W--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV +++ + +P + + KL+AF +F+ Sbjct: 242 FSIREALREGRLVSVLDTFCERRARFFLLWPSGRQVSPKLRAFIDFV 288 >gi|116051627|ref|YP_789534.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115586848|gb|ABJ12863.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 302 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA +G FT AAE++ +S S ISRQ++ LE + +L YR R ++L+E G Sbjct: 4 WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + S +P G LR+ + G+ + + F+ YP +++ Sbjct: 64 TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIRL + + S L+ +L M+ P YL+ P S Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCTTPEYLRRHGTPQSPT 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL + N + + +ED T R G R NS +++ + G G+ L Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V + + LV ++E P+ V+ YP+ + K++ +++ Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284 >gi|212635225|ref|YP_002311750.1| transcriptional regulator [Shewanella piezotolerans WP3] gi|212556709|gb|ACJ29163.1| Transcriptional regulator protein, putative [Shewanella piezotolerans WP3] Length = 295 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 11/274 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +V + GSFT AA L L ++++SR+I LE + +LF+R R L LT+ G Sbjct: 4 EDLKLFTIVVKLGSFTAAANALDLPRANVSRRIGELEKALNAQLFFRTTRQLRLTQHGEA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V E + +L + KP GK+++ + LQ L +F LYPDI++ Sbjct: 64 YYHELLTVLEGFEQAKNKLHDIDEKPIGKVKVGFLPE-SDEALQPALAKFQQLYPDIELD 122 Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + I +N + DI D I K +Q S I R+++++ YA+P YL + EP S+ Sbjct: 123 MRITNNYETDIYALALDFVIYAGK-VQDSGFIARRILSLGRGIYASPEYLASHGEPQSLA 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL KH+ I + P D W + + R +C N + + V G GI + Sbjct: 182 ELSKHDAICY--RWPDGSIDDKWDLISETVHVKSRFTC---NHMGFVRRAIVGGQGIGFM 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 P + +VRI+ + V+ YP+ Sbjct: 237 PPLFALAAIEAKRIVRILPQYESKKEDVWLIYPD 270 >gi|328545632|ref|YP_004305741.1| Uncharacterized HTH-type transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326415372|gb|ADZ72435.1| Uncharacterized HTH-type transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 320 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 18/290 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD LRVF VAR+GS + AA L ++ S++ R+I E +G++LF R G LT G Sbjct: 7 NWDDLRVFLAVARAGSLSGAARTLGVNHSTVFRRIGAFEEALGVRLFERQPGGYLLTPAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDI 122 +L V ++ + ++ ++ SG +R TTID L LL +L F YP I Sbjct: 67 EELRDGALRVEEEIASLSRKVTGQDLRLSGAVRF-TTIDMLAFGLLPRHLAGFRDAYPGI 125 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L++ N +++S D A+R+ + +L+ R++ + YA+ Y EP Sbjct: 126 EVELVVGNVALNLSRREVDVALRVGN-APAETLVGRRVGRLAFAVYASADYRARRPEP-- 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-CLQVNSYLSIMQYCVLGSG 240 +L HN I F D A V R G P + L+ NS + + G G Sbjct: 183 --DLSLHNWIGF---------DSEHEALVRRMAGFLPEVKPVLRTNSVAAALSAAKAGMG 231 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A LP + +LVRI + ++ E L+ T +++AF +F+ Sbjct: 232 LAPLPCGLADLETDLVRIAPLPDEFTLDLWLLTHEDLRQTARIRAFLDFL 281 >gi|187926772|ref|YP_001893117.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gi|241665102|ref|YP_002983461.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728526|gb|ACD29690.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gi|240867129|gb|ACS64789.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 299 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 139/276 (50%), Gaps = 14/276 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++ F V +GS T AAE++ + +S++SR+++ LE + +L R GL++TE G Sbjct: 5 DEIMTFVEVVNAGSITKAAERMGIVKSAVSRRLNDLEDRLKARLLVRSTAGLSVTEAGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + +L+ ++ + ++S SG + ++ + L +L ++ FL L+P + + Sbjct: 65 FHERARRIIAELDEAELTVTDASADLSGTIHMSAPVSLTNLVLMPHICAFLRLHPGLTLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +DI + D AIR + S L+ RKL + A+P YL + PL+ Q+ Sbjct: 125 LSLSDRFVDIVNEGFDIAIRA-GTLSDSRLVARKLTDMRRVTCASPDYLASRGTPLTPQD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241 LD H+ G + E W T P GE + + ++ N+ +++ V G GI Sbjct: 184 LDHHD----GLVSTNAPESTYWHYTA--PDGETYLARPNTRMKANNGEAVITAAVAGLGI 237 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 A +P +I + L+ ++ D + ++Y YP Sbjct: 238 AAVPAFISTELIAQGALIPVLSDYRLAAGSLYAIYP 273 >gi|163758074|ref|ZP_02165162.1| transcriptional regulator, LysR family, putative [Hoeflea phototrophica DFL-43] gi|162284363|gb|EDQ34646.1| transcriptional regulator, LysR family, putative [Hoeflea phototrophica DFL-43] Length = 301 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 18/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MSFDW+++R F A GSF+ AA L +Q +I RQISGLE +G+ LF R RG TLT Sbjct: 6 MSFDWNQVRAFLATAEEGSFSGAARALKTTQPTIGRQISGLEAALGVTLFERTVRGPTLT 65 Query: 61 EQGSKL--H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 E G L H RV E + T S + +G++ ++ T + +L G L + Sbjct: 66 EAGRDLLDHVRVMGETATLISTVA---AGQSQEVTGEVAVSATDLVSAVILPGLLGDLRE 122 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 P I +++I N ++ AD AIR +P + LI R L + YAA YL Sbjct: 123 TAPGIHLRIIASNDISNLMRREADIAIRHVRPTE-VDLIARHLGDFRANLYAASVYLDKA 181 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCV 236 P + + L H + + + L T+ R G P ++S I+Q+ + Sbjct: 182 GRPRNPRALADHAFV--------GSPNSDQLVTILRDKGIPVHRENFVMSSESGIVQWEL 233 Query: 237 L--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + G GI +P + + + +++ ++ + F V+ LK + +++ +F+ K Sbjct: 234 VKSGYGITFMPALLGEATSGIEKVLPELPSLEFPVWLVTHRELKTSRRIRVVFDFLARK 292 >gi|146306147|ref|YP_001186612.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145574348|gb|ABP83880.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 318 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSFT AA+ L LS + +SR I+ LE + +L R R L LTE G + Sbjct: 7 MRVFVQVVERGSFTAAAQALDLSTAQVSRLIADLEQHLEARLLQRTTRRLALTETGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++E E + + PSG+LR+ T LG + + + YP + ++L Sbjct: 67 ERCRQILGQIEEADAEARGAHRTPSGRLRVHTMTGLGLQHITPLIARYAERYPQVVVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D D I + + S L+ ++L ++ AAP YL P +L Sbjct: 127 LAQRTPDLLEDGHDVTIAFARDLPDSQLVAQRLGPVYSVLCAAPSYLAGHGVPQRPSDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + D + + DF D + C QVN ++++ G G LLP + Sbjct: 187 QHRYLRLTDPLYRGQWDFG-----DEQLDALPAECFQVNVAEALVKAAQAGMGFCLLPSF 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+RI+ + +Y YP K + + F+ Sbjct: 242 VASQPLREGRLLRILPQHRLRALNIYAMYPSRRLLDAKTRTWVEFL 287 >gi|187924270|ref|YP_001895912.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715464|gb|ACD16688.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 353 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA L LS + ++R ++ LE +G +L R R L+LTE G+ Sbjct: 6 SMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGTTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE + + + +P G LRI + G + L ++ + YPD+ + Sbjct: 66 LERVRHILDDLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T +M A P YL P + L Sbjct: 126 TLADRHVDLVEEGFDVGIFVARHMRSASIVTRRLTTGYMTVCATPAYLAQHGTPTRPEHL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 H ++ + E P GE R+ + + N+ + Q+ + G G+A+ Sbjct: 186 LSHPCLS------RPSEQGGEERVFTGPDGEVRVRPTNAIVANNTEMLRQFALRGMGVAM 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LV ++ + P V YP L K++ F Sbjct: 240 LPSYLIGRDLASGRLVPLLREYRLPQIEVTIAYPSRLHLPAKVRTF 285 >gi|83593592|ref|YP_427344.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576506|gb|ABC23057.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC 11170] Length = 304 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 25/297 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+ V +GSF+ A L ++ SS+SRQ+S LE +G +L R R L+LTE G H Sbjct: 7 MRLLSRVVEAGSFSEAGRLLGMAPSSVSRQVSALEDTLGTQLLNRTTRRLSLTEAGGLFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + P G L++ + G + L FL YPD+ + L Sbjct: 67 DRALRILADVEDATRVVSSLESAPRGTLKLNVPVGFGNYHVAPALPLFLARYPDLTVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ID+ + D A+R+ ++ SSL+ R+L Y +P YL+ P + +L Sbjct: 127 LSDHFIDLIEEGVDVAVRI-GALRDSSLVARRLADNRRMVYGSPDYLRRMGTPETPHDLT 185 Query: 188 KHNLITF-------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 H I + G L + + TV P L N+ S+ + + GSG Sbjct: 186 AHRCIAYRYRPGPQGWLFER--DGIRLDITVTGP--------LTANNSESLHKMILGGSG 235 Query: 241 IALLPDYIVKDNPN---LVRIMED-VITPS---FTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ + LV ++ D ++P+ ++ YPE+ + K++AF +F+ Sbjct: 236 LAMLPTWMAYSDVKSGLLVPLLGDWTMSPTSLESAIHVVYPESRHLSAKVRAFIDFM 292 >gi|311105588|ref|YP_003978441.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760277|gb|ADP15726.1| bacterial regulatory helix-turn-helix protein, LysR family protein 63 [Achromobacter xylosoxidans A8] Length = 292 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F A+ GS+ AAE L LS S++ + ++ LE +G++L R R ++LTE+G+ Sbjct: 5 NGIHAFVHAAQRGSYVAAAEHLGLSASAVGKSVARLEDRLGVRLLNRSTRRISLTEEGAL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++L+ + E+ P G+LR++ +G LL L EF YP+I+++ Sbjct: 65 YLERCLRIVNELDEAEAEVTRGREAPRGRLRVSVPA-IGYRLLLPLLPEFTRRYPEIELE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ +D+ + D IR + S L R L AP YL P + + Sbjct: 124 LDFNDRIVDVIGEGLDAVIRSGE-FADSRLRARPLRPYRFVVAGAPAYLAARGRPRAPGD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 LD H + + P + W D P+ P + L NS +++ G G+A LP Sbjct: 183 LDGHARLAY--RYPGTSQVQPW-QFRDGPVA-PAPAALSFNSVEALIGAAQAGLGLAYLP 238 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+ ++ D L +++D + +P++ KL+AF +F+ Sbjct: 239 DFALRAALDEGRLATVLDDCLDADGRFSVLWPDSRHPLPKLRAFVDFM 286 >gi|330821573|ref|YP_004350435.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373568|gb|AEA64923.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 300 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF+ AA +L L Q ++S+ ++ LE +G +L R RGLT T+ G + + Sbjct: 7 METFVAVVEAGSFSAAARRLKLGQPAVSKSVAQLEAHLGARLLLRSTRGLTPTDAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++ESS SG+LR+ + + + LK F+ +PD+Q+ +I Sbjct: 67 EHARLAIEEADQAEQAVRESSAGLSGRLRVGAAVTFARLHVLPALKTFVDRHPDLQLDII 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID+ + D A+R+ + + SS+ + + A P YL PL+ EL Sbjct: 127 LDDRAIDLLEEGVDVALRMGR-LDDSSMTAHPIASSRRLVVATPEYLAEAGTPLTPAELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLAT-VDRPI-GEPRISCLQVNSYLSIMQYCVLGS-GIALL 244 +H I + F T V + G R+S + M+ VL G+A+ Sbjct: 186 RHQAIVYSQRGGGESWSFQRDGTEVTVAVSGRVRVSAAEG------MRTAVLADMGLAVA 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ N + ++ D P ++ +P T K +AF F+ Sbjct: 240 SEWMFGPELANGTVRAVLTDWALPPVDLWAVFPSGRLVTSKARAFVAFV 288 >gi|330817470|ref|YP_004361175.1| transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327369863|gb|AEA61219.1| transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 300 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 135/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFIAVAGKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLLRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + VK SG LR++ G+ + + F +PD+ I L Sbjct: 66 LEDCQRIVHDMQNAEASVSAGGVKASGHLRVSGPAGFGRRHVAPLVPAFTAAHPDVTITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL AAP YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVAAPAYLARAGTPRTLDEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H+ + L + W D I R++ ++ + + ++C+ G G+A Sbjct: 185 ARHHCLA---LAANANQQRGWAFQQDGQIVSIRVAGPMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|254000432|ref|YP_003052495.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253987111|gb|ACT51968.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4] Length = 300 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 7/296 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF VA SFT AA+ L L + SIS ++ LE +G +L +R R + LT+ G + Sbjct: 5 DAMQVFVRVAELASFTQAADSLGLPKGSISNAVTQLEARLGARLLHRTTRKVQLTQDGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +++ + Q++ G+LR+ +++ NL+ L EF+ +P I+I+ Sbjct: 65 FYERCKDLLAEVDEVESLFQQTETLLRGRLRVDMPLNMAHNLVIPQLPEFMQRHPGIEIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D + DC +R+ + S L+ R L T+ M A+P Y++ P+++++ Sbjct: 125 LSSTDRRVDPISEGFDCVVRV-GVLTESGLVARHLGTLEMVNCASPAYIRQYGMPMALED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H ++ + ++ F +L A V R P + + VN+ + C+ G GI + Sbjct: 184 LAAHYMVHYVSVLGAKPSAFEYLEAGVSRHCLVP--ARVTVNNSTAYSMACLAGLGIIQV 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P V+ L+ ++ + V YP + +L AF ++ K + Sbjct: 242 PLVAVRAYLQRGELLELLPEFKPEPMPVSLLYPHRRHLSRRLLAFMEWLTQKVHAY 297 >gi|69209774|gb|AAP70013.2| LysR-like protein [Klebsiella pneumoniae] Length = 304 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+I+ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + DI + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKARGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +EL H+ I G + P + R + +VNS + + Q + Sbjct: 182 KELSDHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSPIMVKQLALDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L + K N LV I+++ F VY Y + + AF +F F+K Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDF-FVK 290 >gi|117617569|ref|YP_855739.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558976|gb|ABK35924.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 300 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 23/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V GS++ A + +S + + + GLE +G KLF++ R TLTE G Sbjct: 7 MRIFTRVVDLGSYSAVASEEGISAQMVGKHVQGLEQWLGGKLFHKTTRQQTLTELGQLFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L T+ Q +P+G+LRIA + G + L L FL YP +++ L Sbjct: 67 ARCQRVLEELALTESLTQHLLAEPAGRLRIAAPLSFGHHRLVPLLPAFLDRYPKLEVDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D AIR +P Q +L+ R L+T H AAP YL P +L Sbjct: 127 LTPRWVDLVEEGVDAAIRTLRP-QDEALVARPLLTQHYRLCAAPDYLARHGVPRQPADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239 +H +C+ NW D E R+ S L++N + +++ + G+ Sbjct: 186 RH----------QCLHG-NWGEHERWQFVGEDGQSEEVRVASRLRINHWPALLTAALSGA 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI+L P V+++ L+ +++ P T++F YP A + K+ +F+ Sbjct: 235 GISLQPADQVQEHIAAGRLLPLLDTYRIPDKTLHFIYPAARRQVLKITLLGDFL 288 >gi|83720032|ref|YP_443330.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|167620459|ref|ZP_02389090.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257139575|ref|ZP_05587837.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83653857|gb|ABC37920.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 299 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L YR R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLYRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S+V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGLTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHQPVNYASPTNGRIAPWEWVEGDAVKRVALRGRVT---VNSAEAYIACCLSGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ + + YP + + + F ++ Sbjct: 241 IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWL 290 >gi|187922437|ref|YP_001894079.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713631|gb|ACD14855.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 312 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 151/292 (51%), Gaps = 17/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF AAE++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+V +LE + + +SV P G+LR+++ G + + + ++ YP + + + Sbjct: 67 ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R++ T H+ A+P YLK P ++ +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL-GSGIA 242 +HN + + + +E AT D PR+ L VN +L + VL G+GIA Sbjct: 187 ARHNYLQYAGV--SALEIAP--ATGD---ASPRVRLTGNLIVN-HLEAQRVIVLQGAGIA 238 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 +L ++ D+ LV ++ D + P ++ Y + K+++F +F+ Sbjct: 239 MLGTEVIGDDLAAGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDFL 290 >gi|117618303|ref|YP_858045.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559710|gb|ABK36658.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 309 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 130/261 (49%), Gaps = 13/261 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + L +F V +GSF AAE+LHL++S++ + I+ LE +G++LF+R R +LT Sbjct: 1 MANSLNGLDLFASVVEAGSFAQAAERLHLTRSAVGKGIARLEQRLGVQLFHRTTRSQSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G+ HR ++ + L + + +G L+++ + GQ + L E +P Sbjct: 61 EEGALFHRHCLRALEEVRLGEAALASNKLTLNGSLKVSMPVLFGQLCVAPLLLELAQAHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L ++ +D+ + D IR +P S L +L M AAP YL EP Sbjct: 121 GLALSLSFSDRKVDLVEEGLDLVIRNGEPPDSLDLAAHRLGEHGMTLCAAPSYLAERGEP 180 Query: 181 LSIQELDKHNLITF---GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + + +L +H I + G ++ + D W + RP G LQ + +I Q + Sbjct: 181 MMLADLAEHEGIAYLRQGRVLAWQWQLDGQWQSV--RPTGR-----LQFDDLHAITQAAI 233 Query: 237 LGSGIALLPDYIVKDNPNLVR 257 G G+A LP ++ + P+L R Sbjct: 234 AGFGLAWLPSWLAR--PHLER 252 >gi|134297380|ref|YP_001121115.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140537|gb|ABO56280.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 349 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|220925132|ref|YP_002500434.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949739|gb|ACL60131.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 302 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 23/298 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF VA++GSF+ AA +L LS +++S+ +S LE +G LF+R +R L LTE G Sbjct: 6 DFEAWAVFARVAQAGSFSRAAAELGLSTATVSKAVSRLEARLGTGLFHRTSRRLALTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + + + + +P G +R+A + G L L +FL +P++ Sbjct: 66 RAALEGAARIVAAGEAAEADAEAGAREPRGLVRVAAPMSFGLKHLAPLLPDFLAAFPEVA 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D +R+ + SSL R+L + AAP YL P Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LADSSLRVRRLCGVRRSLVAAPAYLARAGRPAHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISC---LQVNSYLSIMQYC 235 Q+L +H C+ + +L DR P GE ++ L+ N+ ++ Sbjct: 185 QDLARH----------ACL-GYAYLPNPDRWHFAGPGGEVSVTPSGRLRANNADALTPAL 233 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G+A+ PD+++ + + L R+M P + P ++ A FI Sbjct: 234 LAGLGLAVQPDFLIWEELASGRLERVMPGWAPPPIALNLVMPPGSLRPARVAALIAFI 291 >gi|91784152|ref|YP_559358.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91688106|gb|ABE31306.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 300 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R LTLT +GS Sbjct: 6 QIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H+++ + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 66 LEDCQRIIHEMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ +L A+P YL P S+ +L Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLRLGENRRVCVASPAYLSRRGAPHSLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 HN + G + W+ D + ++S ++ + + +C+ G G+A Sbjct: 185 AHHNCLALG---ASANQQRGWMFQQDDKVVSIKVSGTMECSDGAVLHDWCLEGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|167835644|ref|ZP_02462527.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 294 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 141/287 (49%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGTRFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E Q EL S+ PSG+LR++ L +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAQQELSRSAHAPSGRLRVSLPA-LSSPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P S L R+L T +P Y P + +L +H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-HDSRLSARRLGTFSQVVVGSPDYFARHGAPRTPADLARH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + P+ + N+ + + + + G G+A +PD Sbjct: 186 ACLLY--RFPTTGKLERWPLRPAPGDADVELPK--SMICNNVETRVCFAIRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + L +++ + S + + +P + KL+AF +FI Sbjct: 242 FAVRDELASGRLRTALDEYVERSQSFHVLWPSGRHASPKLRAFVDFI 288 >gi|167590769|ref|ZP_02383157.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 301 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 141/301 (46%), Gaps = 16/301 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L L+ SS+ R + LE +G L R R +TL++ GS Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGAVLLNRTTRQVTLSDAGS 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L + + +PSG LR++ + G + ++ FL YP + I Sbjct: 64 VYYARAKRLLEELAEADALVSDRGSEPSGPLRVSVPVAYGVRRIAPHIAAFLARYPKLDI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIRL + S+ ++ R+L T + A+ YL+ P + Sbjct: 124 DLQLTDERVDLVVGRIDVAIRLGEAAPSADVVARQLGTFQRYVVASHAYLEARGMPATPG 183 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL H + F GD D + ATV I R L+ N + + G+GI Sbjct: 184 ELVDHACLRFHFGGDQQAWTFADAHGAATV---IVAGR---LKSNHSEVLRDAALDGAGI 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDV-ITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294 ALLPD++V + L R+ E +TP V Y + + ++ AF +F+ A Sbjct: 238 ALLPDWLVDADVRSGRLRRLFEQYEVTPDAARSVVTALYLPNQRGSKRVAAFIDFVESLA 297 Query: 295 R 295 R Sbjct: 298 R 298 >gi|167582781|ref|ZP_02375655.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 296 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A +L +S S+I + I+ LE +G++LF+R R +TLT++G H Sbjct: 9 AFVRTAETLSFVAAGRKLGVSASAIGKTIAKLERSLGVRLFHRTTRKVTLTDEGRHFHER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +L Q L +S+ P G+LR++ + +G L L EF YPD+++ L + Sbjct: 69 CHRALEELRDAQAALSQSAQTPRGRLRVSLPV-IGYRFLLPVLPEFKRRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR + SSL+ R+L A+P YL P +++EL H Sbjct: 128 DRLVDVVEGGFDAVIR-SGTLSDSSLMSRRLGPFSFLLCASPAYLARAGAPRTLRELGAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + P + W D GEP + + N+ ++ G GI +PD+ Sbjct: 187 ACVRY--RFPTTGKLQPWALLPDG--GEPPNLHTTMTCNNMEALRAAVTAGFGIGYMPDF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +D + LV +++ +P + + K++ F +F+ Sbjct: 243 LARDALADGALVTVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFV 288 >gi|126438703|ref|YP_001057931.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|167909782|ref|ZP_02496873.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|126218196|gb|ABN81702.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] Length = 294 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ L +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + PR + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFALRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + L +++ I T + +P + KL+AF +FI Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288 >gi|261494574|ref|ZP_05991056.1| putative LysR family transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309765|gb|EEY10986.1| putative LysR family transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] Length = 296 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 24/300 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + LR F +VA++ SFT AA Q+ +SQS++S I G+E + IKLF+R R ++ T Sbjct: 1 MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L++ ++ +++ L E G LRI + +++L EF+ YP Sbjct: 61 EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L+ +++ +DI + D IRL + + R + M A A+P+YL P Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDVKMTAAASPNYLAQHGTP 180 Query: 181 LSIQELD-----KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYL 229 + +L KH L T G ++ D PI +P+ + N +L Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRD---------PITKKIVKFQPQGNLTANNGFL 231 Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + Y G GI P ++ DN +LV I+ D + YP +N+ LKA Sbjct: 232 -LQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNSPLLKAL 290 >gi|296389273|ref|ZP_06878748.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 297 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + S AA L +S S++ ++++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++EL +S P G+LR+ ++ L L+ L +F+ YPDI++ L Sbjct: 69 SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPALADFMQAYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P+ S L R+L + +P Y P ++L +H Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 + + +E+ W + R GE P+I V N+ + + + + GIA LPD Sbjct: 186 TCLHYRFSNTGRLEE--W--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV +++ + +P + + KL+AF +F+ Sbjct: 242 FSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV 288 >gi|270261789|ref|ZP_06190062.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270045273|gb|EFA18364.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 295 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 127/242 (52%), Gaps = 6/242 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S+I + I+ LET + ++LF+R R +TLT +G+ + Sbjct: 9 AFVQAAETLSFVEAGRVLGVSASAIGKSIARLETRLAVRLFHRSTRSMTLTAEGTLFLQR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ + EL ++ P GKLR+ ++ L +LL L EF+ YP I++++ Sbjct: 69 CQRILGEMAAAEQELSDTRSAPRGKLRV--SLPLVGSLLNPVLAEFIRQYPQIELEVDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +++ + D IR+ + + S L+ R+L T H+ AAP YL+ P +L +H Sbjct: 127 DRRVEVIEEGFDAVIRVGE-TEDSRLMSRQLGTFHLQLVAAPGYLRQAGIPQQPADLRQH 185 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + P + +W +A D+ +G+ + + NS +++ G GIA LPD+ Sbjct: 186 ACLLYK--FPTTGKVESWPVADWDKILGDGLRTSVVCNSVDTLIYLAEQGQGIACLPDFA 243 Query: 249 VK 250 VK Sbjct: 244 VK 245 >gi|192359615|ref|YP_001982027.1| putative HTH-type transcriptional regulator YcjZ [Cellvibrio japonicus Ueda107] gi|190685780|gb|ACE83458.1| putative HTH-type transcriptional regulator YcjZ [Cellvibrio japonicus Ueda107] Length = 306 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 131/272 (48%), Gaps = 11/272 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +VA SFT AA +L +SQS++S+ I GLE +G++LF R R ++LT G +L Sbjct: 9 LSAFLMVAEEASFTRAAAKLGVSQSALSQTIRGLEERLGLRLFARTTRSVSLTPAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ E+ E KP+G +RI ++LQ + FL YPDI I+L Sbjct: 69 ELIGPAMGQIDMGLEEITELRDKPAGTIRINADEYAVHSVLQPAVTRFLPEYPDIHIELA 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSIQEL 186 +D DI D +R R + + +I ++ H M +P Y P ++ +L Sbjct: 129 IDYGLTDIVSGRYDAGVR-RGGLVAKDMIAVQISPPHPMAVVGSPAYFARRSTPKTLHDL 187 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H I +P E F W+ ++ E R+ L NS SI + G G+A Sbjct: 188 TEHTCINL--RLPTHGEHFPWV--FEKAGKEQRVKVEGSLVTNSIASIRDAALGGLGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVIT--PSFTVYFCY 273 LP V+D+ +++E + + +F Y Y Sbjct: 244 LPQAYVRDHLAAGQVIEVLASWRKTFEPYHLY 275 >gi|116250129|ref|YP_765967.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254777|emb|CAK05851.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 301 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V +GS + AA +L LS+S +S +++ LE +G L +R R LTLTE G+ Sbjct: 5 EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGMLLHRTTRKLTLTEDGTV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E ++ E SG +RIA + G+ L L FL +P+I++ Sbjct: 65 FLGRAARIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIELT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D++ +D + D D IR PI S L+ KL A+P YL P S+ + Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPIADSRLVAWKLAHSRRLLCASPDYLARQGIPSSLAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H I + + + + D+ + T D I L +N+ + + G GIALLP Sbjct: 184 LNSHRGIFYTN---RGVADWRF-QTFDGAIVVRAKLALGINNGDMLRDAAIAGLGIALLP 239 Query: 246 DYIVKDNPNLVRIME-DVI-TPSFT-VYFCYPEALKNTGKLKAFRNFI 290 +I R+ E DV P +Y +PE + KL+A + + Sbjct: 240 AFIAGPAIREGRLAEIDVGHKPEAEFIYMAHPEGRNPSAKLRAIADHL 287 >gi|34498758|ref|NP_902973.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34104609|gb|AAQ60967.1| probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472] Length = 298 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 128/273 (46%), Gaps = 10/273 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V GS + AA QL + + + R++ LE +G++L R R + T++G Sbjct: 6 QLETFVAVVGLGSLSAAARQLGVVPAMVGRRLDALEERLGVRLLVRTTRSVAPTQEGEAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + S + G LR++ G+ + ++ F L+P++++ L Sbjct: 66 YEDCQRILADLTEAEAAVASGSGRARGHLRLSAPAGFGRRHVAPHVAAFQRLHPEVKVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ D DCAIR+ + S L+ +L H A+P YL P ++++L Sbjct: 126 DLSDRLVDLQRDRIDCAIRI-SDLSDSGLVAIRLAENHRVVVASPAYLAAHGAPRALEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H ++ G+ + W VD +P+ L+ N + + + G G+A Sbjct: 185 QRHQCLSLGE-----SQSRGWSFAVDGKPVNLKVSGALECNDGAVLHDWALQGLGLAWRS 239 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + VKD+ L +++D +P + VY P+ Sbjct: 240 LWEVKDDLSEGRLATVLDDFSSPDYPVYAVVPQ 272 >gi|167564682|ref|ZP_02357598.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 305 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VV R SF+ AAEQL +S + +S++++ LE ++G +L +R R + +TE G + Sbjct: 8 DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ T ++ ++ ++ + P G LRI+++ G+++L L +F YP + ++ Sbjct: 68 VYAWTEKILDDVDHLVEDVSTTRNVPRGTLRISSSFGFGRHVLAPALLDFNERYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I + LI ++L T + A+P YL P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPAYLARYGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233 L H +C+ + D P G R+ S ++V LS +Q Sbjct: 187 LAAH----------QCLA----IKERDHPFGVWRLTARGETSSVKVGGALSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GI L I + P L R++ D I P+ V+ YP L + K++ + Sbjct: 233 WALAGRGIVLRS--IWEAGPLLASGELKRVLPDAIQPA-NVWAVYPARLAASAKVRVCVD 289 Query: 289 FI 290 F+ Sbjct: 290 FL 291 >gi|148255791|ref|YP_001240376.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146407964|gb|ABQ36470.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 301 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 138/294 (46%), Gaps = 11/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+ F V +GSFT AA L L Q +I+++I+ LE + G +LF R R L T + + Sbjct: 5 DALQTFIRVMEAGSFTQAAADLGLGQPAITKRIALLEEQFGCRLFVRTTRKLRPTAEADR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ E+ E+ + + PSG LR+ G+ E+ YP++++ Sbjct: 65 VLKLAKEIVTLFESAGLPSPKRVGAPSGTLRMTVPTSFGRYFFGDIFAEYGRRYPEVRLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +D+ + AIR+ + SSSL+ R++ T+ AAP L R P + Sbjct: 125 IRFTEQFVDLVETGTELAIRI-GVLSSSSLVARRVGTVKRLLVAAPALLTRHRPPRLPND 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVL-GSGIAL 243 L + +T+ L PK F T +G P ++C + IM L G G A+ Sbjct: 184 LRQLPCVTYSRLSPKNEWSFES-ETGRHVVGITPSLTCDDAD----IMSLAALEGLGAAV 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 LPD+ + LV ++ D PS ++ YP+ + + + FR+ I +A Sbjct: 239 LPDWCAVGHIASGKLVHLLPDYDVPSLPLHVVYPDPQWMSHRARLFRDLIIERA 292 >gi|187923524|ref|YP_001895166.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714718|gb|ACD15942.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 298 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/306 (28%), Positives = 146/306 (47%), Gaps = 20/306 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L VF V SGS T AAE+L+ + S +SR ++ LE ++ L R R L LT Sbjct: 1 MKTSTDELLVFVTVIDSGSITAAAEKLNQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + +E + + +PSG+LR+ + + ++ F LYP Sbjct: 61 EEGETFLQRARAILDAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L + + +D+ D AIR+ + +Q S+L R L T + A+P YL EP Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIG------EPRISCLQVNSYLSIMQ 233 S++ L +H LI F E N W R G EP I+ +S ++ Q Sbjct: 180 KSVEALREHRLIGF-----TAPEHLNRWPLREGRKGGAESLKIEPAITA---SSGETLRQ 231 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289 + G GIA L D++ + LV I+ +V+ V Y ++ G+++ F +F Sbjct: 232 LVLSGWGIACLADFMSAADVREKRLVPILGNVLADERQRVSAVYYQSASLAGRVQCFLDF 291 Query: 290 IFLKAR 295 I + + Sbjct: 292 IAARVK 297 >gi|323494047|ref|ZP_08099163.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311674|gb|EGA64822.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 305 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 6/246 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V SGSF+ A L+++ SS++R I LE ++ LF R R L LTE+G Sbjct: 3 DLIRIFNQVVESGSFSQAGSVLNMAPSSVARNIDNLEAQLKTTLFKRSTRQLLLTEEGQY 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H+ + T E++++ +P G LRI+ G L + +FL YP ++++ Sbjct: 63 FHQQALPLLDNANTLVEEMKKTHRQPEGLLRISAFESFGNIFLAPLIPKFLQQYPKVKVE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LDN +D++ + D AIR+ P + S L RKL+T A+P YL N E + + Sbjct: 123 LELDNNVVDLNSENIDIAIRIGSP-KDSRLRARKLMTNQTLLVASPDYLNNHPEITAPDD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + LI + + +W + + ++ L ++ + G+G+ LL Sbjct: 182 LADHNCL----LISQKRQRSHWHFQRGKVNKQVMVTGNLSSRGGSPVLWGALQGTGVLLL 237 Query: 245 PDYIVK 250 D++VK Sbjct: 238 SDWMVK 243 >gi|294142453|ref|YP_003558431.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293328922|dbj|BAJ03653.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 303 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 145/294 (49%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + + +S+ISR+++ LE ++ ++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGIPKSTISRKVAQLEEQLDVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + ++E + ++ ++ SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCISIRDEIEAAKATIENTNNHVSGSLRIAIPVSFSQELIANLCSSFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + ++ + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDSEVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKANGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL HN I G + P + + + R + +VNS + + + + Sbjct: 182 QELANHNGILLGTSRSAPIWPLGKGNRKTMVSFKRKV--------RVNSAVMVKKLSLDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + + K+ + +LV I+++ +F VY Y + + F +F Sbjct: 234 FGIAMLSNSVCKNELASGSLVPILQEWPIEAFKVYGVYSSRRQLATNISVFLDF 287 >gi|323526521|ref|YP_004228674.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323383523|gb|ADX55614.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 300 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 66 LEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P S+ +L Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPHSLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + G + W+ D + ++S ++ + + ++C+ G G+A Sbjct: 185 AQHNCLALG---ASANQQRGWVFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|224824697|ref|ZP_03697804.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224603190|gb|EEG09366.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 309 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 19/299 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F +AR GSFT AAE + ++S IS+ + LE ++G L R+ R + LTE G + Sbjct: 11 DALLAFDALARLGSFTAAAEAIGCAKSRISQLVKDLEHDLGTVLVLRNTRRVALTEAGRR 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L +++ L+ + +++E+ G LR+++T+ Q LL L E L+P ++++ Sbjct: 71 LACHAAQLRSMLDKVRPDIEEAQGAIGGPLRVSSTMSFAQYLLAPLLGELAELHPALEME 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ +N+ D D +R R + L+ + + ++ YAAP YL P + ++ Sbjct: 131 LVAENRLQDPVEAGLDFCLRTRA-VHDDRLVAKSIGFVYEELYAAPAYLARAGMPQTPED 189 Query: 186 LDKHNLI--TFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L KH L+ ++ + L + +D +++ RP L + Y I G GI Sbjct: 190 LLKHQLLHNSYNETGLDWRLEKDGQFVSLAIRPT-------LLCDQYAVIANAACAGVGI 242 Query: 242 ALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LLP Y+V +P L R ++ T + V+ YP K +AF + + R Sbjct: 243 GLLPQYVV--SPQLARGELCPVLPGWRTSGWPVFLVYPYRHPMPKKYEAFLQRVVPRLR 299 >gi|254249529|ref|ZP_04942849.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124876030|gb|EAY66020.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 342 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 148/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++++ LE ++G +L +R R +T+T+ G + Sbjct: 43 DDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAGER 102 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LR++++ G++++ L +F YP + ++ Sbjct: 103 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLNVR 162 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L T H A+P YL P S+ + Sbjct: 163 LDLFDRLVDVAGEGYDLDVRIGDDI-ADHLIARRLATNHRVLCASPDYLARRGTPRSLAD 221 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233 L H+ + + D P G R++ ++V LS +Q Sbjct: 222 LTSHDCLAIKER--------------DHPFGVWRLNVRGETVTVKVGGALSTNHGEVAVQ 267 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + + L R++ + P+ ++ YPE + + K++ +F+ Sbjct: 268 WALAGRGIVLRSIWEAAPLIERGELCRVLPEATQPA-NIWAVYPERVAASAKVRVCVDFL 326 >gi|323525875|ref|YP_004228028.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382877|gb|ADX54968.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 306 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 22/304 (7%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + + V + GSF A L +SQS +SR ++ LE +GI+LF R R + Sbjct: 1 MPFDERMLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + LE + + G+LR+ + +L L F+ Sbjct: 61 TLTDEGRRFYEQIVPLLSGLEEAAASAAQGATAVRGRLRVNLDPFFSRLVLGPRLGGFVD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+Q++LI ++ D+ D D AIR +P SSLI RKL+ + AAP YLK Sbjct: 121 RHPDLQLELITRDQLGDMVSDGFDVAIRFGEP-PVSSLIARKLLDTRVLTVAAPAYLKKH 179 Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229 P + EL+ +H I F D P F+W R P G L VN Sbjct: 180 GHPANPAELESGQHACIKFRD--PLTGYPFSWEFHRGRKKMVITPQGR-----LTVNDVG 232 Query: 230 SIMQYCVLGSGIA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ C G G+A L + + +V + D + +Y YP K++AF Sbjct: 233 TLHSVCTAGQGVAQTLALGAESLLGSGKMVELFPDWGDEVYPLYALYPSRHHPPAKVRAF 292 Query: 287 RNFI 290 +FI Sbjct: 293 LDFI 296 >gi|146310215|ref|YP_001175289.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145317091|gb|ABP59238.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 299 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 141/290 (48%), Gaps = 20/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L +SS+S+++S LE +VGI+L R R L LT G Sbjct: 8 MALFALVAEMGSFTAAARKAGLPKSSVSQRVSQLEQQVGIRLLNRTTRKLNLTFAGEHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + +Q PSG+LRI +G LL +F YPD+ + + Sbjct: 68 VHCREMLAASERAEYAIQRLRDNPSGRLRITCPAGIGATLLAHLNADFQRRYPDVSLDVC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186 + + +D+ D A+R KP Q SSLI R + + A+P YL C EPL ++L Sbjct: 128 ISDDLLDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPDYLARC-EPLEHPRQL 185 Query: 187 DKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H IT L+ + ED+ L IS ++ + + + G+GI Sbjct: 186 VEHRCITHKAWPEWLLRRESEDYRHLPD------NAHIS----DNLVYARESAIAGAGIT 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP ++++D N LV+++ + ++ YP N+ L ++ +F Sbjct: 236 LLPAFLLEDKLENGALVQVLSEWNVEGNELWLAYPSRKLNSPALMSYVDF 285 >gi|190893111|ref|YP_001979653.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190698390|gb|ACE92475.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|327192563|gb|EGE59513.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 299 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 135/276 (48%), Gaps = 17/276 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F A +G F+ AAE+LHL++S++S+ I+ LE +G++LF R R +LT++G + Sbjct: 9 IFVQTAEAGGFSAAAERLHLTRSAVSKTIARLEQRLGVRLFNRTTRTQSLTDEGRFFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + +L+ + G+LR++ + G+ L L +PD+++ Sbjct: 69 CLRAIEEIRIGEAQLESGRREVRGRLRVSMPVLFGRQCAAPILTRLLDDHPDLELDFSFS 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D D A+R + L+ R + M A+P YL+ P ++++L H Sbjct: 129 DRIVDLLEDGFDLAVRNGPLKDNPDLMARAIAGQSMTVCASPAYLEKYGAPQTLEDLAHH 188 Query: 190 NLITF--GDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 I + GD D W+ G PR S L+++ SI V G G+A Sbjct: 189 QAIVYRRGD------NDRPWIFPA--AAGPPREILPKSRLRLDDLASIADAAVEGRGLAW 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 L ++V+D + LVR++ D+ + F Y +P + Sbjct: 241 LTCWLVRDRVLSGELVRVLTDMPSNIFQAYAVWPRS 276 >gi|187924121|ref|YP_001895763.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715315|gb|ACD16539.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 302 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 135/288 (46%), Gaps = 7/288 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G F AA+ L + +++S+ + LE +G+KL R R +++T G+ + Sbjct: 7 IRIFARVVETGGFGRAAQSLQMPNATVSKWVKSLEDHLGVKLLERSTRSVSVTTDGTAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + +L+ + L P G LR+ + +L L EF YPDIQ++L Sbjct: 67 ERTRHLLSELDDIEATLGRDRANPRGVLRVDSGGSTASGILIPALPEFCARYPDIQVRLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ D+ + DCAI R +L+ + + T+ A+P YL PL +E+ Sbjct: 127 VTDRTADLIAENIDCAI--RSTADDPNLVTQAIGTLRWTTCASPAYLAEHGTPLHPREIV 184 Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 DKH + + ++L +R + + + + V+ + + + G GI Sbjct: 185 DDKHAVAGYFSASSGLAPPLHFLRDGERIVLDKVRNTVMVSESNAHLATALAGLGIVHTL 244 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D++V+ LV I+ D VY YP + + + KL+ F +++ Sbjct: 245 DFMVRPAVARGELVPILTDWRPDPLQVYLAYPPSRRYSTKLRVFADWV 292 >gi|313498191|gb|ADR59557.1| Transcriptional regulator, LysR family protein [Pseudomonas putida BIRD-1] Length = 289 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 141/283 (49%), Gaps = 7/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F + R+ + AA+QL + Q+++SR+++GLE +G +LF R GL LT+ Sbjct: 1 MNWDDVRIFLTIQRASTLRGAAQQLVIDQTTVSRRLTGLERALGSRLFLRTTGGLVLTDT 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ R+ ++ + + + + + +G++R+ TT L + + ++ +P++ Sbjct: 61 GQEVLRMAEDMERMAVSFERRGEGADARVAGEVRVTTTDALAVDFVLPAIEHLRASHPEV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + +D++ AD A+R +P Q LI R+L + YA YL+ EP Sbjct: 121 RVILSTTTRLLDLARREADIAVRTLRPEQ-PDLIVRQLGCWEVGLYATRSYLEKHGEPQP 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q L H++ + + + N LA R G +++S L + + G I Sbjct: 180 GQGLANHDIALYQQGVTSRQD--NTLAGESRAQGR---VVAELDSSLMLATFVRAGLAIG 234 Query: 243 LLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLK 284 LP+Y+ + +P LVR+ S+ + + L T +++ Sbjct: 235 ELPEYLAQRDPALVRLWPGCRRAKSYEAWLVLHQDLARTARVR 277 >gi|301385008|ref|ZP_07233426.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060456|ref|ZP_07251997.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] gi|302133285|ref|ZP_07259275.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 303 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 9/300 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + +F V RSGSF AA QL + +++SR+I LE ++G +L R R L LT Sbjct: 1 MIADLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + + L + +L +PSG++RIA D + +FL YP Sbjct: 61 QTGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ A+P YL Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S++ L H+ ++ P + L D I + ++S N+ ++ + + G Sbjct: 180 PDSLESLQAHDCVSAA--YPGGSTTWRMLGP-DAKIHDVQLSSRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ N LV ++ S ++ YP + + AF + K R Sbjct: 237 LGIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296 >gi|260772457|ref|ZP_05881373.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260611596|gb|EEX36799.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 291 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 138/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +V GS+T + + + ++I+R+I LE + ++L RHAR LTLTE G + Sbjct: 4 DDLNLFRLVVEHGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R S + +L + + + SG +R++ +L + ++ F+ YPDI ++ Sbjct: 64 FFRDCSPLLQRLASMAEAITDECRGASGTIRLSAPENLTKRMMMPMFNAFMHQYPDINLE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L N + + D R+ P + SSLI RK+ + A+P YL P ++ Sbjct: 124 LTTSNHAVQLDPTEWDVIFRV-GPQRDSSLIARKISEVKDILVASPLYLAKHPTPTHAEQ 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +++L+ L+ + + ++ +G + S L V + C G GI L+P Sbjct: 183 LSQYSLLKGDPLLKWQLCNDKGETCINNDVGRFQASTLNV-----VRSACSDGLGITLMP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 D ++K+ + +LVR++ D +Y Y K++ F +F+ Sbjct: 238 DVMLKEFLADGSLVRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286 >gi|309779596|ref|ZP_07674355.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308921537|gb|EFP67175.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 133/262 (50%), Gaps = 12/262 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V G F+ AA ++ S++S+ ++ LET +G +L R R L LT +G+ Sbjct: 9 FGEMEVFVRVVEEGGFSAAARACRMTPSAVSKLVARLETRLGARLVNRSTRRLQLTPEGA 68 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + V L+ + E + +PSG+LRI + + +G ++L + FL +P++ + Sbjct: 69 AFYERSVTVLADLDEAERE-ASAGAQPSGRLRINSNVPVGTHVLLPIVPAFLACHPEVSL 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ +D+ D D A+R P++SS L+ RKL + A+P YL P + Sbjct: 128 DIALTDRVVDLLEDRTDVALR-SGPLKSSRLVARKLGQTRLMVVASPAYLARAGTPRTPA 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +HN +TF + + F T P G +IS + ++ V G G+A Sbjct: 187 DLARHNCLTFSYVRAENAWPFAKRGRRTAFTPQGNTQISDGE-----ALRAVAVAGLGLA 241 Query: 243 LLPDYIVK---DNPNLVRIMED 261 L ++ V+ + LV ++ED Sbjct: 242 RLAEFQVRADLEAGRLVPVLED 263 >gi|206558863|ref|YP_002229623.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198034900|emb|CAR50772.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 349 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|220916837|ref|YP_002492141.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219954691|gb|ACL65075.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 11/250 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++ VF V +GSFT AA L L +SS+SR ++ LE ++GI+L R R L+LT+ Sbjct: 1 MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + T + L E +P G +R+ +DL +L + FL +P + Sbjct: 61 GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPDLAR-LTDAFLRAHPQV 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ L + +D+ + D AIR + SSL+ RKL + +AAP YL+ P Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRA-GVLADSSLLARKLSDSALALFAAPSYLQARGRPRR 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 + +L H+ + L E W T R GE +++ + + + V G+ Sbjct: 179 LADLAGHDCL----LYRAGPETAVWRLTGRR--GEEQVTVHGRAAADEFAFVRGMLVAGA 232 Query: 240 GIALLPDYIV 249 GIAL+P +V Sbjct: 233 GIALVPTGMV 242 >gi|206560483|ref|YP_002231247.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198036524|emb|CAR52421.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 131/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF + +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P+++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPVTLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V ++ LV +++ P ++ +P+ Sbjct: 242 WWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|298489035|ref|ZP_07007058.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156533|gb|EFH97630.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 297 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 128/279 (45%), Gaps = 17/279 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L VF VAR SFT AA L +SQS+IS I LE +GI+L R RG + TE G Sbjct: 5 DFNSLAVFITVARERSFTKAAAHLGVSQSAISHSIRSLEERLGIRLLARTTRGASPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L Y +ET L E KP+G +RI + +L L L YPD+ Sbjct: 65 ERLLVSLVPYYEGIETEIAALGELRDKPAGTIRITSPDHAASTILWPKLSRLLPEYPDLT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ + + IDI + D +R+ + + R M AP Y + +P Sbjct: 125 LEINIGYRLIDIVAERFDAGVRIGDQVAKDMIAVRISPDFRMAVVGAPSYFAHRAKPQIP 184 Query: 184 QELDKHN-----LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 Q+L HN L T G L + W + + + + ++ IM + Sbjct: 185 QDLTTHNCANLRLPTHGGL-------YAWEFSKAGKALHVQVSGQMIFSNSPQIMAAALQ 237 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 G G+A P+ +V+ ++ L+R++ED +P+F Y Y Sbjct: 238 GYGLAYAPEDLVQAYVEDGQLIRVLED-WSPTFPGYHLY 275 >gi|126441686|ref|YP_001058473.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126221179|gb|ABN84685.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] Length = 299 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H L+ + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|311105010|ref|YP_003977863.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310759699|gb|ADP15148.1| bacterial regulatory helix-turn-helix protein, LysR family protein 53 [Achromobacter xylosoxidans A8] Length = 307 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 148/287 (51%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A QL +S S+I + ++ LE ++G++LF+R R +TLT +G Sbjct: 9 VFVQVAETRSFVAAGRQLGVSASAIGKSVARLEAKLGVRLFHRSTRSVTLTAEGMLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL ++ P G+LR+ ++ L L+ L EF+ YP+I++ L Sbjct: 69 SRRILAEIEAAELELSRAAGAPRGRLRV--SLPLVSGLVLPILGEFMREYPEIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P S L R+L + + A+P YL + P + +L H Sbjct: 127 DRMVDVIEEGFDAVVRTGEP-ADSRLSARRLGSFQILLVASPAYLASRGTPRTPADLLHH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPD 246 + + + P + W + + GEP + + N+ + + + G GIA LPD Sbjct: 186 SCLHY--RFPSSGKLETW--ALRQAEGEPELQLPVSMICNNIETRACFALQGLGIAYLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ + +LV+++ + + +P + + + K++A +F+ Sbjct: 242 FAIREPLADGSLVQVLAGQAERTNVFHVLWPASKQPSPKVRALVDFL 288 >gi|241207306|ref|YP_002978402.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861196|gb|ACS58863.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 137/288 (47%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V GS + AA +L LS+S +S +++ LE +G L +R R LTLTE G+ Sbjct: 5 EGIAAFVAVVEVGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGAV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E ++ E SG +RIA + G+ L L FL +P+I++ Sbjct: 65 FLGRAARIVSEIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIELT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D++ +D + D D IR PI S L+ KL A+P YL P S+ + Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPIADSRLVAWKLTRSRRLLCASPDYLARQGIPSSLAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 LD H I + + + + D+ + T D I L +N+ + + G GIALLP Sbjct: 184 LDSHRGIFYTN---RGVADWRF-QTPDGAIVVRAKLALGINNGDMLRDAAIAGLGIALLP 239 Query: 246 DYIVKDNPNLVRIME-DVI-TPSFT-VYFCYPEALKNTGKLKAFRNFI 290 +I R+ E DV P +Y +PE + KL+A + + Sbjct: 240 AFIAGPAIREGRLAEIDVGHKPEAEFIYMAHPEGRNPSAKLRAIADHL 287 >gi|262173272|ref|ZP_06040949.1| transcriptional regulator [Vibrio mimicus MB-451] gi|261890630|gb|EEY36617.1| transcriptional regulator [Vibrio mimicus MB-451] Length = 300 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ P+++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPEVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S I RKL + M A P YLK C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTDVAMSTLATPAYLKQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D PI LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHNTTQQTIDVPID----GDLQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + ++ LV + D PS Y + +LK F F Sbjct: 245 FYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|186471537|ref|YP_001862855.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197846|gb|ACC75809.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 134/277 (48%), Gaps = 7/277 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D++ L F VAR +FT AA QL +SQS++SR ++G+E +G++L R R ++LT Sbjct: 1 MKEDFNDLVGFMTVARERNFTRAAAQLGVSQSALSRTVAGVEKRMGLQLLARTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + + ++E L+ + +P G +RI TT + L+ L YP Sbjct: 61 EAGEQLLAAIAPRFEEIEAEVDSLRAMTNRPGGTVRITTTDYAANTYVWPRLQPLLREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++++L+ D DI D D +RL + + R + M P YL++ + Sbjct: 121 ELKVELVNDYGLADIVADRYDIGVRLGDQVAKDMIAVRIAPDMTMAIVGCPSYLESRPQA 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + Q+L HN I +P +W R + R+ L N+ ++ + G Sbjct: 181 KTPQDLTLHNCINL--RLPTRDSLLSWELRKGRRELQVRVDGQLTFNNVYQMVDAALAGF 238 Query: 240 GIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273 G+A +P IV+D+ R ++ED P+F + Y Sbjct: 239 GLAYVPKDIVEDHVRTGRLCWVLEDWY-PTFVGHHVY 274 >gi|299068859|emb|CBJ40100.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 293 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AAE L + S++SR+I LE +G++L +R R + LTE G Sbjct: 6 NDMALFVEVVKAKGFRGAAEALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGLI 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E +PSG LR + +D L + EF LYP I Sbjct: 66 YFERCKRIVDEARLAHEQLGELLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYPGITFD 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ +P ++S LI R L ++ + YA+P YL+ EP + + Sbjct: 126 FDLTPRQVDLVSEPFDVAIRMGEP-ENSQLIARPLASLQANLYASPAYLERSGEPRTPAD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + G L TV P+G +NS I + L GI L+P Sbjct: 185 LGRHECL--GMLKVGSWTLHEGAHTVTVPVG----GRFTLNSVGMIRRLATLDMGIILVP 238 Query: 246 DYIVKDN 252 + IV D+ Sbjct: 239 EEIVADD 245 >gi|307729875|ref|YP_003907099.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584410|gb|ADN57808.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 306 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 139/300 (46%), Gaps = 14/300 (4%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + + V + GSF A L +SQS +SR ++ LE +GI+LF R R + Sbjct: 1 MPFDERMLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + LE + + G+LR+ + +L + F+ Sbjct: 61 TLTDEGRRFYEQIVPLLNGLEEAAASAAQGATAVRGRLRVNMDPFFSRLILGPRVGAFID 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ ++LI ++ DI + D AIR +P SSLI RKL+ + AAP YLK Sbjct: 121 RHPDLHVELITRDQLGDIVSEGFDVAIRFGEP-PVSSLIARKLLDTRILTVAAPSYLKKH 179 Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQ 233 P + EL+ +H I F D P F+W R I P+ L VN ++ Sbjct: 180 GHPANPAELENGRHACIKFRD--PLTGYPFSWEFHRGRKKMIVTPQ-GRLTVNDVGTLHS 236 Query: 234 YCVLGSGIA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 C G G+A L + + +V + D + +Y YP K++AF +FI Sbjct: 237 ACAAGQGVAQILALGAESLLASGKMVELFPDWADEVYPLYALYPSRHHPPAKVRAFLDFI 296 >gi|144900257|emb|CAM77121.1| regulatory protein, LysR:LysR, substrate-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 329 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 140/290 (48%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF VA SGSF+ AAE L+L ++S++ + +ET VG +L R R + LT G+ Sbjct: 35 LRVFIRVAESGSFSRAAEALNLPRASVTTAVQAVETRVGTRLLSRTTRRVALTPDGTAYL 94 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + + G+L+++ L + L L FL YP +Q++L Sbjct: 95 ERCRRLLDDVDDMDALFRQGADQIKGRLKVSLPERLANHTLIPALPAFLARYPGVQVELA 154 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR + ++ S LI R+L + ++A+P YL P+ +L Sbjct: 155 VTDRFVDLVGEGVDCVIRAGE-LRDSRLIGRRLGAMVQGSFASPAYLSAHGTPIEPADLP 213 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 H LI + + DF+W G PR + L V++ + + + G G+ Sbjct: 214 GHRLIGY---VGPQGADFSWEYM---EAGRPRQIVVPARLAVDNAEAQVAAAMAGLGLIQ 267 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y ++ + LV ++ P + YP + K+ AF +++ Sbjct: 268 VPVYGIRPQVTDGRLVEVLAGYRPPPLPMTVLYPHRRHRSPKVTAFIDWV 317 >gi|91794244|ref|YP_563895.1| LysR, substrate-binding [Shewanella denitrificans OS217] gi|91716246|gb|ABE56172.1| transcriptional regulator [Shewanella denitrificans OS217] Length = 298 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 148/298 (49%), Gaps = 21/298 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA SFT AAEQL+LS+ +SR + LE + ++L +R R ++LT +G + Sbjct: 7 MRSFVEVADCASFTQAAEQLNLSRLQVSRHVKELEQWLNLRLLHRTTRSVSLTLEGEETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + Q Q+ + K G +R+A+ I LGQ+ L + EF+ L+P+++ Q + Sbjct: 67 SYCQEILSGVAQMQSRAQQHNTKLVGTIRLASPIGLGQHKLFDVVNEFIALHPNVKFQFV 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + + + D A+R +P +LI R+L+ I AAP YL++ ++I ++ Sbjct: 127 LADSLAAMVGERVDIALRYTHQP--DDNLIARRLMQIDSVICAAPEYLEHHEPIINIADI 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN L+ ++WL +D + + LQ N +++ +L G+ LP Sbjct: 185 GRHNC-----LVHTSQSQWHWL--IDNQHQQLNVGGNLQANDMGVLIKAALLAKGLVCLP 237 Query: 246 DYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + NP L+ ++ ++P ++ Y L + +L R FI A+ W+ Sbjct: 238 ADLA--NPYLADGQLIEVLPQYVSPGKPLWAVY---LSRSYQLLHVRAFIDFIAQKWQ 290 >gi|310815366|ref|YP_003963330.1| Transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308754101|gb|ADO42030.1| Transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 302 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 10/299 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D R+ V GSF AE+ +S S+ IS LE+++G++L R R L+LTE G Sbjct: 5 DADRLLISVVDLGSFARGAERHGVSPGQASKVISRLESDLGVQLLSRTTRALSLTEAGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V ++E +++++ +PSG+LR+ + G + L L EF YP+I + Sbjct: 65 YVERMRRVVEEVEAIDASVRQATGRPSGRLRVTAPLTFGVSTLTPILVEFARAYPEITLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ + + + D A+R+ P+ SSLI RKL I + A+P YL P Sbjct: 125 ISFSDRVVSLVDEGFDAAVRIGHPVD-SSLIARKLTDIRIVLGASPGYLAAHGTPDQPAA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+ + + FN T + P S + +++ S + LG GIA +P Sbjct: 184 LVGHDCVIDANFTDATRWRFN---TAGGRVSVPVQSRIVLSNAESCARAASLGLGIARIP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 ++ + LV +M ++ +P KL++F F+ F DW+ Sbjct: 241 SFVAGPMFQSGALVPLMTQTEDDPVGLFIVFPPGRHLPLKLRSFVEFLAGHFRGTPDWE 299 >gi|317493997|ref|ZP_07952413.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917770|gb|EFV39113.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 300 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 18/286 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +V GSFT AA + L +SS+S+++S LE ++G++L R R L LT G + Sbjct: 8 MALFALVVECGSFTSAALRAGLPKSSVSQRVSNLEQQLGLRLLNRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI +G LL +F L YP++ +++ Sbjct: 68 VHCREMIQAAERADLSLQRLKDNPSGRLRITAPAGIGATLLAHVCSDFRLSYPEVSLEIF 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ + D A+R KP Q SSL+ R+L + A+P YL E ++L+ Sbjct: 128 ISDVMRDLVQEGFDVALRTGKP-QDSSLVGRRLGYSPRYLLASPSYLAQHPELEHPKQLE 186 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I ++ + E + W +D ++ L + + + G+GI L Sbjct: 187 RHQCIAHRAWHEWVLQRGGEFYRWELPMDHA----------ADNLLYVRECVLAGAGITL 236 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP ++ + + LVR++ +Y YP N+ L F Sbjct: 237 LPAFLSQELVEQGRLVRVLPQWEAEGNELYLVYPSRKLNSPALDRF 282 >gi|307729300|ref|YP_003906524.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583835|gb|ADN57233.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 300 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H + + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 66 LEDCQRILHDMHNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P S+ +L Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPHSLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + G + W+ D + ++S ++ + + ++C+ G G+A Sbjct: 185 AQHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|171316380|ref|ZP_02905600.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171098509|gb|EDT43311.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 349 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|28869807|ref|NP_792426.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853052|gb|AAO56121.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 14/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ + Sbjct: 7 MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + EV + ++ +++ +P+G LRI + G LL L F +PD+++ L+ Sbjct: 67 QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D AIRL QSS LI R L + AAP YL P ++L Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAPTRPEDLR 186 Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 HN + F P E W T P GE + + N+ + Q G G Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + +LPD +V+ + LV ++ D P + Y + KL++F F Sbjct: 243 VVMLPDALVQRDLQEGRLVALLPDYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294 >gi|264677076|ref|YP_003276982.1| cyclolysin secretion ATP-bindingprotein cyaB [Comamonas testosteroni CNB-2] gi|262207588|gb|ACY31686.1| cyclolysin secretion ATP-bindingprotein cyaB [Comamonas testosteroni CNB-2] Length = 297 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 135/286 (47%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF+ VA+ GSF A L LS ++IS+ I+ LE VG +L R R + LTE+G Sbjct: 7 LQVFHRVAQRGSFAEAGRSLGLSPAAISKNIAELEAHVGTRLIQRTTRRMALTEEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L L PSG L+++ + + ++ FL YP++Q+ L Sbjct: 67 EHVTRALDALADADSALCPFKAAPSGLLKVSAPMTFTLTQISSSIPTFLERYPELQLDLH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +DI + D AIR ++ SSLI R L ++ AAP Y + P + +L+ Sbjct: 127 LDDRRVDIVREGFDLAIRGSDRLEDSSLIARPLTSMSHVLCAAPGYFEKRGRPHTPADLN 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 I F +F ++ R S V+S L++ G G++L+P Sbjct: 187 GLEHIRFSLSGHADTWEFEQGGRMESVAVNARYS---VSSSLAVRDALRAGFGVSLIPRP 243 Query: 248 IVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+++ R +++D T T+Y YP T KL+A +F+ Sbjct: 244 YVEEDLRTGRLQAVLDDWSTVKTTLYAIYPSRQHVTPKLRALLDFL 289 >gi|260775725|ref|ZP_05884621.1| transcriptional regulator LysR family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608141|gb|EEX34310.1| transcriptional regulator LysR family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 300 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 145/294 (49%), Gaps = 11/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V + SF AA +L +S+S++++++ LE +G++L +R R ++LTE G Sbjct: 5 DAIPFFLEVVKHASFAQAARELGVSRSAVNKRVVQLEEGLGVRLLHRTTRQVSLTEAGMN 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H+ ++ Y+ L+ + + G L+I+ + G+ ++ + FL + IQI Sbjct: 65 FHQHVNQAYYWLQKAEDAATSQQSQAIGTLKISAPMSFGRLVVAPIIPTFLEQFSGIQID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK-NCRE-PLSI 183 + + + +DI D AIR + SSLI RKL+ A+P Y + N R P Sbjct: 125 MTMSDDYVDIVAGGYDLAIR-GGDLDDSSLIARKLIKSRSVVCASPLYFESNARSVPSHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +EL +HN +T+ E W+ I ++ +VN+ +++ G GIA Sbjct: 184 RELIQHNALTYR----HTSETAEWVFAQGHEIESISVTGNYRVNNSEALLSATTQGLGIA 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LPD+I + + L++++ + P ++Y +PE KL+ F +F+ K Sbjct: 240 RLPDFIARPYLHSGELLQLLPQYVMPEKSIYALFPERDHMPIKLRVFLDFLTQK 293 >gi|238761173|ref|ZP_04622150.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] gi|238761426|ref|ZP_04622402.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] gi|238700400|gb|EEP93141.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] gi|238700653|gb|EEP93393.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] Length = 300 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 144/290 (49%), Gaps = 10/290 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + L VF VA + SF A L +S S++ + I+ LE +G++LF+R R + LT +G Sbjct: 10 NLSSLTVFVQVAETRSFVVAGRVLGVSASAVGKSIARLEARLGVRLFHRSTRSIALTSEG 69 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + ++E ++E+ + + KP GKLR+ + L LL L +F+L YPDI Sbjct: 70 AIFLERSRRILAEVEAAELEMLQLADKPRGKLRV--SFPLASTLLLPVLADFMLAYPDIV 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L ++ +D+ + D +R + + S L RKL ++ A+P YL+ EPL Sbjct: 128 LDLDFSDRIVDVVEEGFDAVVRTGE-LTDSRLSARKLGQSNVLLVASPAYLEQYGEPLHP 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H I P + W + + P IS + N+ + M + + G GIA Sbjct: 187 SELANH--ICLHYRYPNSGKLETWPLPYEPDLQIP-IS-MVCNNIETRMCFALRGLGIAC 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+ + + L +++ + + +++ +P T KL+ F +FI Sbjct: 243 LPDFSMGNALVEGKLRTLLDGYMKRTVSLHVVWPSGRYITPKLRVFIDFI 292 >gi|206559768|ref|YP_002230532.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035809|emb|CAR51700.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 307 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 5/290 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA+ L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 6 DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G L L FL YP + Sbjct: 66 ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLRHLSPVLPAFLERYPRVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + S+L R+L + A+P YL P Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LNDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +++++H +T+ +L F A+ D +G ++ N+ I+ V G G+AL Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRHPASGDE-VGVSVHGRIRTNNADVILPALVGGHGLAL 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V D L +M D V P + ++ +F+ Sbjct: 244 QPEFLVWDAMQRGELEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFL 293 >gi|171320993|ref|ZP_02909982.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171093739|gb|EDT38881.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 296 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 13/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G Sbjct: 7 NGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRH 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + S+ +P GKLR++ + +G L L EF YPD+++ Sbjct: 67 FYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELD 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ +D+ D IR P+ SSL+ R+L A P YL P + + Sbjct: 126 LDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRAPHD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIA 242 L+ H+ + + P + +W LA D G P + + N+ ++ + G GI Sbjct: 185 LEAHDCVRY--CFPTTGKLQDWALAARD---GTPLKLRTAMTCNNMEALRGAVMAGLGIG 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +PD++ + D LV +++D +P + + + KL+ F +F+ Sbjct: 240 YMPDFLARDALDTGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 290 >gi|170728259|ref|YP_001762285.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813606|gb|ACA88190.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 298 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 151/289 (52%), Gaps = 6/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +++F +RSGSFT AA++L+L+QS++S++I+ LE ++G LF+R++R + LT QG Sbjct: 4 YESMQLFIHTSRSGSFTAAADELNLTQSAVSKKIAWLEKKLGFTLFHRNSRKIQLTTQGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + +L+ G+LR++ + +L + +F+ ++P + + Sbjct: 64 NYLSYCKQALDEMTYIESQLKGELNAVIGELRLSVPSAMATQILAKPISDFMAIHPQLTV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++++ +D+ D AIR+ + S R L +A+P YLK+ P + + Sbjct: 124 NISVNDRQVDLIESKVDIAIRV-ATLPDSGYKARFLFNNQSIMFASPSYLKDKGTPKTAE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL H + + P + ++ + + + ++ +S +++ ++G GI+ L Sbjct: 183 ELTTHQCLVYSLKAPSNI--WSLTDSNNTTVKVKVKERVKSDSAEMLLKMSLMGHGISAL 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++VK DN L I+ D + S +Y + +++AF NF+ Sbjct: 241 PNWMVKQHIDNGRLTAILVDYQSMSLPMYAVFKADGYQPYRIQAFVNFL 289 >gi|28870352|ref|NP_792971.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853599|gb|AAO56666.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 303 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 9/300 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + +F V RSGSF AA QL + +++SR+I LE ++G +L R R L LT Sbjct: 1 MITDLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + + L + +L +PSG++RIA D + +FL YP Sbjct: 61 QTGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ A+P YL Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S++ L H+ ++ P + L D I + ++S N+ ++ + + G Sbjct: 180 PDSLESLQAHDCVSAA--YPGGSTTWRMLGP-DAKIHDVQLSSRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ N LV ++ S ++ YP + + AF + K R Sbjct: 237 LGIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296 >gi|170697720|ref|ZP_02888807.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170137335|gb|EDT05576.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 349 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|115353237|ref|YP_775076.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172062109|ref|YP_001809761.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115283225|gb|ABI88742.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] gi|171994626|gb|ACB65545.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 349 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|107024063|ref|YP_622390.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691149|ref|YP_836772.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734480|ref|YP_001766427.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894252|gb|ABF77417.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116649238|gb|ABK09879.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|169817722|gb|ACA92305.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 349 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|161526297|ref|YP_001581309.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348989|ref|YP_001944617.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343726|gb|ABX16812.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189333011|dbj|BAG42081.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 349 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEQFPKVVPDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 127 LVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+L Sbjct: 187 EHPSLSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGGDIARGALVRLLPDFKLPQVEINIAYPSRRHLPAKVRTF 285 >gi|311280828|ref|YP_003943059.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1] gi|308750023|gb|ADO49775.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1] Length = 300 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 144/298 (48%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++ +F V SGSF+ AAEQL + S++SR + LE+++G+ L R R L+LT Sbjct: 1 MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + EL E+ P G LR+ + + L ++ F YP Sbjct: 61 EEGERYFRRMQGVLQEMAAAENELMETRNTPRGLLRVDAATPVMLHFLMPLVRPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P YL P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKVIASPDYLAMHGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 + +L H + F + P + W LA D + E + C L NS ++ Q C+ G Sbjct: 180 QTADDLSAHLCLGFTE--PVSLN--TWPLARYDGQLLE--VECGLTSNSGETLKQLCLNG 233 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L DY+V ++ V I+ D P F+ + A+ +++AF +F+ Sbjct: 234 NGIACLSDYMVDKEIESGEFVEILADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|317050029|ref|YP_004117677.1| LysR family transcriptional regulator [Pantoea sp. At-9b] gi|316951646|gb|ADU71121.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 299 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 130/270 (48%), Gaps = 5/270 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GSFT AAE L L + S+SRQ+ LE ++G +L +R R + LT+ G + Sbjct: 7 MQVFVRVAEMGSFTRAAESLGLPKGSVSRQLQALENQMGTRLLHRTTRRVHLTQDGLVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SGKLR+ ++ + + L EFL YP I+I+L Sbjct: 67 DRCLDLLSMLDDMDSLFQHDPATLSGKLRVDMSVAMATGFILPRLPEFLQHYPGIEIELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC IR+ + ++ S LI RK+ T + A+P YL P+ +++L Sbjct: 127 SSDRQVDVIREGFDCVIRVGE-LKDSGLIARKIGTHALINCASPDYLSRFGRPVRLEDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H ++ + + + F + + + VNS + C+ G GI +P Sbjct: 186 QHAMVHYTQQLGQPSSGFEYFDGKQTHYIQTG-GVVTVNSTETYRAACIAGLGIIQVPAI 244 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274 V+ ++ LV ++ + YP Sbjct: 245 GVQPLLESGQLVEVLHHFPAKPMPISLLYP 274 >gi|330445750|ref|ZP_08309402.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489941|dbj|GAA03899.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 300 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 8/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE ++++S +S++IS LETE+G++L YR R LTLTE G Sbjct: 5 DDLVLFTQVIEHGSFSKVAELNNVTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGEV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + H + + S SGK+R++ G+ +L + +F +P + ++ Sbjct: 65 LYHRAKSISHVAQAAFDSVTGYSEALSGKIRMSVPTISGELVLANAVADFCQRHPGLSVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN +D+ D D IR ++ SSLI R + A+P Y+++ +P ++ Sbjct: 125 MSLDNHFVDLVADNYDLVIRTGY-LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPKD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + + P+ F+W + ++S ++ ++ + + G+GIA L Sbjct: 184 LLSHNCLGYN---PQSTGPFDWQFLKQNKVYTQKVSGNFSSDNAAALKKVVLAGNGIAYL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P+ ++ D LV ++ +Y YP K +++A Sbjct: 241 PNCLIYDELQRGELVELLPTHAGKVVGIYAVYPYTRKPAKRIQAL 285 >gi|325272410|ref|ZP_08138802.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324102451|gb|EGB99905.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 152/302 (50%), Gaps = 11/302 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F V GSF+ AA Q +S + +SRQ+ LE +G +L R R L LTE G+ Sbjct: 4 FSAMQSFRRVVDLGSFSAAASQAGVSHTVLSRQVKQLERHLGAQLLTRTTRRLHLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ +++ +EL E +P+G LR+ G+ L L +F+ +P +QI Sbjct: 64 LFYRHCVQILEQMQAMSLELSEHQQQPTGTLRLGVATAFGELELGRWLPDFVERHPLLQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L ++ +D+ D +R+ + +SSL+ R+L + AAP YL+ P + Sbjct: 124 ELHCSDRFVDLLEAEIDVCLRVTDQLPNSSLVARRLTGSEVLLVAAPGYLQRHGTPATPD 183 Query: 185 ELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H L+ + L P+ ++ N R I PR L NS +++ + GIA Sbjct: 184 ELTGHPLLGYSQLPHPQRLQLTNNQGE-QRDILMPR--RLSANSPMALRAAAIGALGIAS 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 +IV D N LV ++E P+ T+Y YP++ K++A +++ + +AR W Sbjct: 241 FDRFIVHDALQNGRLVPVLEGWKLPARTLYAVYPQSRYLPPKVRALLDYVQAYYSQAR-W 299 Query: 298 KF 299 ++ Sbjct: 300 EY 301 >gi|170733405|ref|YP_001765352.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169816647|gb|ACA91230.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V D+ LV +++ P ++ +P+ Sbjct: 242 WWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|167834974|ref|ZP_02461857.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 351 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P+ ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPMHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|213969828|ref|ZP_03397962.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|213925376|gb|EEB58937.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 354 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 9/297 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V RSGSF AA QL + +++SR+I LE ++G +L R R L LT+ G Sbjct: 55 DLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLTQTG 114 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + L + +L +PSG++RIA D + +FL YP +Q Sbjct: 115 EHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYPRVQ 174 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLS 182 ++ +L ++ D+ D D A R P+Q S + R+L+ A+P YL P S Sbjct: 175 LEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGMPDS 233 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 ++ L H+ ++ P + L D I + ++S N+ ++ + + G GI Sbjct: 234 LESLQAHDCVSAA--YPGGSTTWRMLGP-DAKIHDVQLSSRFNANTAQALRKATLAGLGI 290 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 ALLP +++ N LV ++ S ++ YP + + AF + K R Sbjct: 291 ALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 347 >gi|148975143|ref|ZP_01812067.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] gi|145965067|gb|EDK30317.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] Length = 301 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R R L LT G L+ Sbjct: 10 IRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTHAGQDLY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + G +++ LG+ ++ + EF+ LYPDI I L Sbjct: 70 TKCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYPDISISL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ ++ + I RKL+ I M A+P Y +P ++L Sbjct: 130 DFSSNRVDLIEDAFDIAFRM-GSLEDAGFIARKLLDIEMGTLASPEYFVRKGKPNHPKDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ +T + K + F L + + LQ + ++Q G+GI +P Sbjct: 189 IHHDCLTGS--VRKWI--FQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNGIIRVPT 244 Query: 247 -YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y +++ + LV++ +D + P Y +++ F +F+ Sbjct: 245 IYCLQELNDGQLVQVFDDWVVPKVDFSAIYHRDRYQPSRIRTFIDFV 291 >gi|160898474|ref|YP_001564056.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364058|gb|ABX35671.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 305 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 147/292 (50%), Gaps = 23/292 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S+I + ++ LE +G++LF+R R +TLT +G+ Sbjct: 17 VFVQVAETRSFVAAGRLLGISASAIGKSVARLEDRLGVRLFHRSTRSITLTAEGTLFLER 76 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E Q+EL ++S P G+LR+ ++ L +L+ L EF+ YP+I++ L Sbjct: 77 SRRILAEIEAAQLELSQASTAPRGRLRV--SLPLVSSLVLPVLGEFMRAYPEIELDLDFT 134 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D D +R P S L R+L A+P YL P ++L +H Sbjct: 135 DQLVDVIEDGFDAVVRTGAP-ADSRLSARRLGAFGYLLVASPGYLAQRGTPRVPEDLLQH 193 Query: 190 NLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 + + + G L P W+ + R G P + + + N+ + + + + G GI Sbjct: 194 SCLHYRYPHSGKLEP-------WV--LRRAAGAPELQLPTSMICNNIETRLCFALQGLGI 244 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A LP++ +++ + L ++ D + + + +P + + KL+A +F+ Sbjct: 245 AYLPEFSIREPLADGRLQPVLADCMEHTNVFHVLWPASKHPSPKLRALVDFL 296 >gi|239815506|ref|YP_002944416.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239802083|gb|ACS19150.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 320 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 14/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V SGS + AA++L LS+ ++R ++ LE G +L +R R L+LT G + Sbjct: 5 NAMRVFVTVVDSGSLSAAADKLDLSRPVVTRYVAELEQWTGARLLHRTTRRLSLTAAGEE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L +V Q +++ + P G+LRI + Q L + +++ L+P + + Sbjct: 65 LLPRCRQVLELAGDMQEAVRQPAEAPRGQLRITASTSFAQAQLADAVADYVRLHPGVAVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ +++ + D AIR+ I +LI R+L A+P YLK +PL ++E Sbjct: 125 LVLLDRAVNLVDERIDLAIRVAVEID-PNLIARRLTDCRSVVCASPGYLKEHGQPLRVEE 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L + N +T FG + +N+ D P+ + N S+M G+GI Sbjct: 184 LAQRNCLTHSYFGRSL------WNFTRREDGTPVSVAVGGNVSTNDAASLMHLARAGAGI 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP Y+ LVR+ + +Y Y L+ +F+ Sbjct: 238 AMLPTYLTAGLLQAGELVRLFPEFEPQVVGMYAVYASRKHMPATLRTMLDFL 289 >gi|254251077|ref|ZP_04944395.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124893686|gb|EAY67566.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 349 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|284919978|emb|CBG33033.1| LysR-family transcriptional regulator [Escherichia coli 042] Length = 304 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 143/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L +F V SGSF+ AAEQL + S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R + ++ + E+ E+ P G L I + + L +K F YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLHIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L + A+P Y+ + Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKS 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L +H + F + P + W +A D + E + L NS ++ Q C+ G+ Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY++ LV +M D + P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|254501667|ref|ZP_05113818.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222437738|gb|EEE44417.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 304 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 130/284 (45%), Gaps = 6/284 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW++ R F V A GS + AA L+L+Q ++SRQ++ LE +G+ LF R ++ L LT Sbjct: 6 ITFDWNQARAFLVTAEEGSLSAAARALNLTQPTLSRQVAALEETLGVTLFERVSKSLVLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + + S + G + I+TT LG LL L+ P Sbjct: 66 EAGVELAEHVRAMGEAASRVSLAASGQSQQIEGMVTISTTDILGIYLLPEILRNLRRKAP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+I++ N D+ AD AIR +P L RKL Y A YL + Sbjct: 126 GIEIRIRCTNSLSDLRRREADIAIRHVEP-DHPDLYARKLYDASAKVYGARSYLSRFGDS 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LS+++ H+ I F D P+ + L + P+ E I L S +Y G G Sbjct: 185 LSMKDAGAHDFIGFDD-NPQLV---GHLRAMGLPVTEANIK-LSSPSGAVAWEYVRRGLG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + ++ D I P LV +D+ F V+ L + +++ Sbjct: 240 LGIMADEIAACCPELVPAFDDLTEVYFPVWLVTHRELHTSRRIR 283 >gi|206561140|ref|YP_002231905.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198037182|emb|CAR53103.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 294 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L LS S+I ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +++ + EL +S P G+LR++ TI LL L +F+ YP+I++ + Sbjct: 69 CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R P S L R L H A+P YL+ P + +L + Sbjct: 126 SDRIVDVIDEGFDVVLRTGHPTD-SRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQ 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W R P + V N+ + + + + G GIA LP++ Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRAPRAGTPPEVPVSMVSNNAETRLCFALRGLGIACLPEF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+D + L +++D + Y +P KL+AF +++ Sbjct: 243 FVRDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYM 288 >gi|271500266|ref|YP_003333291.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270343821|gb|ACZ76586.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 305 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 17/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF HAA+ L L S+++ I LE + ++L R R + LT +G++ Sbjct: 7 MQIFIRVAEAGSFIHAAQTLSLPASTVTSTIKNLEKHLQVRLLNRTTRRVNLTPEGAQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + T+ L ++ +P G+LR+ + ++ NLK+F YPDI + + Sbjct: 67 ASCREILALIAHTESSLTDAIQRPQGRLRVDMPAGIAHAVITPNLKDFRRRYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR + S+LI R L + A+P YL PL+ +L Sbjct: 127 VSDRQVDLIQEGVDCVIRTGD-LSDSTLIARPLGKLTWVTCASPAYLHAKGTPLTPDDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGI 241 H I + + + ++ + I +QVN +++ +Q C+ G G+ Sbjct: 186 HHQAIHYFSGNARRANEMRFVRGHESKI-------VQVNGVMAVNETGLYIQMCLDGYGL 238 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A L +V + L+ ++ED V YP + L+AF +++ Sbjct: 239 AQLAKSVVSRYLQDKRLIEVLEDWRPADVPVTLLYPHHRFVSPALRAFTDWV 290 >gi|204927662|ref|ZP_03218863.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323004|gb|EDZ08200.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 302 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + ++ V GSF AAE L L + +++R + LE ++G+KL +R R +++T++G + Sbjct: 7 EAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +L+ + L S+ P G+LR+ I L + ++ L +F YPDI+I Sbjct: 67 FYQRCLSLLSELDDVR-RLFSSTQPPKGRLRLDVPITLTRAVIIPALGDFQNRYPDIEIV 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DC IRL + + SS + R+L T M AAP YL P SI E Sbjct: 126 LGSSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184 Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241 L H + F ++ W TVD I ++ S + V++ + + + G GI Sbjct: 185 LMTSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGILH 242 Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P +I L I+ D P V YP+ K++ F +++ Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292 >gi|167579261|ref|ZP_02372135.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 305 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V R SF+ AAEQL +S + +S++++ LE +G +L +R R + +TE G + Sbjct: 8 DDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G+++L L +F YP + ++ Sbjct: 68 VFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I + LI ++L T + A+P YL C P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADRLIAKRLATNYRVLCASPGYLARCGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + I + F W TV ++ L N +Q+ + G GI L Sbjct: 187 LAAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242 Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P L R++ D + P+ V+ YP L + K++ +F+ Sbjct: 243 --RSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291 >gi|89095356|ref|ZP_01168272.1| transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] gi|89080361|gb|EAR59617.1| transcriptional regulator, LysR family protein [Oceanospirillum sp. MED92] Length = 298 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SF+ A+ L+L S++SRQ++ LE L YR R + LT +G Sbjct: 11 MRTFLEVVEHMSFSEASRALNLVVSAVSRQVADLEKHFDCTLLYRTTRSMKLTPEGEFYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +LE + E + K GKLRI ++ Q LQ L F+ YPD+ I + Sbjct: 71 EKFRQVIEQLEALESSKSERTNKIQGKLRITAPFNIDQLGLQHQLAAFMRQYPDVSISWV 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +++ + D A+R+ ++ S I RK + + A+P YLK EP ++L Sbjct: 131 LVNRYVNLIEEGFDLAVRV-GDLEDSGFIARKYGLLEVDFVASPDYLKTHGEPKHPKDLS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + D + F+++ + + L VN + + G GIA LPD+ Sbjct: 190 EHQCLI--DSSIRQPGRFSYMENNKQHQVSVK-GALDVNQGRILADFAAAGLGIAQLPDF 246 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++K D+ LV +++ P + YP A L+A F+ Sbjct: 247 LIKDYIDSGQLVPVLQAYKLPPRDISLVYPAAKLTNPTLRALIEFLL 293 >gi|293394798|ref|ZP_06639089.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422749|gb|EFE95987.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 295 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF AAE L L S+++ + GLE + ++L R R ++LT +G + Sbjct: 1 MQIFTRVAEAGSFVRAAETLSLPPSTVTSTLKGLEKYLQVRLLNRTTRRVSLTPEGLQYL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ ++ + L +S +P G+LR+ + ++ NLK+F YPDI + + Sbjct: 61 AQCREILFLIDHAEASLTDSVKRPQGRLRVDMPGGIAHFIVMPNLKDFFRRYPDIYLMVG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D+ + DC IR+ + + +S+L+ R L A+P YL+ P S +EL Sbjct: 121 VNDRQVDLIQEGVDCVIRVGE-LNNSTLVARPLGRFRWVTCASPDYLREYGIPQSPEELS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I + K + + + R I P VN ++ C+ G G+ L + Sbjct: 180 RHRAIHYFSGQAKRANEMRFARGAETRSI--PMNGGTAVNETGLYIKMCLDGFGLVQLAE 237 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V + L+ ++ D PS V YP + ++ F +++ Sbjct: 238 SVVSEYLQAGKLIEVLADWQPPSIPVNLLYPHQRFLSPAVRVFADWV 284 >gi|241764319|ref|ZP_04762348.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241366333|gb|EER60870.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 297 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 132/286 (46%), Gaps = 5/286 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR SFT AA QL +SQS++S I ET++G++L R R ++ T+ G Sbjct: 5 NYNDLTAFITVARERSFTRAASQLGVSQSALSHSIRAFETKLGVRLLTRTTRSVSPTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R + ++E ++E KP+G +R+ T + +L L+ L +PD + Sbjct: 65 ERLLRSVAPQLDEIEAEVATIRELQDKPAGLVRVTTAEHAAETILWPKLEHVLPAHPDFR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D DI D D IRL + R I M +P Y + P S Sbjct: 125 VEVCIDYGLTDIVADRFDAGIRLGHQVAKGMTAVRISPDISMAVVGSPSYFERHARPRSP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L +HN I P + W D R+ L +N+ I+ + G G+ Sbjct: 185 HDLTQHNCINL--RFPTSGGLYAWELEKDGSKLNVRVDGQLVLNNLSQILGATLAGLGLC 242 Query: 243 LLPDYIVKDNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAF 286 +P+ I + + R+ + + T P F Y Y + +++ + +F Sbjct: 243 FIPEDIARPHIETGRLKQVLKTWCPKFPGYHLYYPSRRHSSRALSF 288 >gi|24372292|ref|NP_716334.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24346225|gb|AAN53779.1|AE015516_1 transcriptional regulator, LysR family [Shewanella oneidensis MR-1] Length = 329 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 139/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + G LRI N+L + F+ L+P + ++ Sbjct: 64 FYQRSQNILAQLDETLFEMTNDDAEIRGHLRIQMFPIHSMNVLMQAIFRFMDLHPKLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I + +D+ + D A + + + L+ R + T + YA+P YL P + +E Sbjct: 124 VISSAESVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLCFYASPTYLAKYGTPNTTKE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 ++ HN+ F K + W+ E R+ NS +++ + G GI Sbjct: 184 IESHNVSLFRLSNGKIFNEL-WIGAEQ----EVRVRGNFCSNSVEVAVEFALQGRGIVYA 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V D + L+ ++ D+ Y YP + + F +FI Sbjct: 239 PAEVVADLVASGQLITLLPDIPPHPGECYLAYPSRRYVSLASRRFIDFI 287 >gi|327192685|gb|EGE59623.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 304 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 16/281 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V +GSFT AA L + ++++SR+I+ LE E+G++L R R L+ T+ Sbjct: 2 LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSATDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +S+ +E + L E+ +P+G +RI+ + G + LQ + + L YP Sbjct: 62 GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L + +++ + D A R ++ S+LI RKL + H A+P YL P Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 +L +H+ + G WL ++ P G+ I N ++M + G Sbjct: 181 PADLVRHDCVVAGQ-----STHAQWL--LEGPHGQETIPVSGRFAANEMQAVMAAAIAGY 233 Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEA 276 GIA LP + ++D L R+++ TP ++ YP + Sbjct: 234 GIARLPHGVANAYIRDG-RLCRVLDGYTTPVGGLHVVYPSS 273 >gi|239816923|ref|YP_002945833.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239803500|gb|ACS20567.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 300 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 139/288 (48%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GSF+ AA + H +Q ++++Q++ E + ++L R+ RG++LTE G+ + Sbjct: 7 MEMFVRVVETGSFSKAALEFHTTQPTVTKQVAATEARLKVRLLNRNTRGVSLTEPGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + E + ++ + G LRI T++ G+ ++ E++ +P +Q+ L Sbjct: 67 EKCKNIVREAEEAESIVRLRQNQAQGLLRIGTSVAFGRRVVVPLALEYMRRHPQVQLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ D AIR+ K + SSL R L T AAP YLK P Q+L Sbjct: 127 FEDRYVDLIAQGIDVAIRMGK-LADSSLGARYLGTNPWAMVAAPGYLKKHGTPKRAQDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H + + ++ D W + P+ P + N+ +++ G GIAL+P Sbjct: 186 AHVALIYSSVV----GDEFWRMHTPKGDPVTVPVSGRFRSNNLSAVLAAARDGLGIALMP 241 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ + + ++ ++ D P ++ +P GK+ F F+ Sbjct: 242 RYVASESLASGKVLEVLGDHKLPEQEIHAVFPSPKLVPGKVSGFVAFL 289 >gi|197122067|ref|YP_002134018.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171916|gb|ACG72889.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K] Length = 301 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 11/250 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++ VF V +GSFT AA L L +SS+SR ++ LE ++GI+L R R L+LT+ Sbjct: 1 MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + T + L E +P G +R+ +DL +L + FL +P + Sbjct: 61 GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPDLAR-LTDAFLRAHPQV 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ L + +D+ + D AIR + SSL+ RKL + +AAP YL P Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRA-GVLADSSLLARKLSDSALALFAAPSYLDARGRPRR 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 + +L +H+ + L E W T R GE +++ + + + + G+ Sbjct: 179 LADLARHDCL----LYRAGAETAVWRLTGRR--GEEQVTVHGRAAADEFAFVRGMLLAGA 232 Query: 240 GIALLPDYIV 249 GIAL+P +V Sbjct: 233 GIALVPTGMV 242 >gi|115376665|ref|ZP_01463894.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115366346|gb|EAU65352.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 267 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 133/266 (50%), Gaps = 10/266 (3%) Query: 29 LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88 + +S++SR++S LE VG +L R R L LTE G + + + + E ++ + Sbjct: 1 MPKSTVSRKVSELEERVGAQLLQRTTRKLRLTEVGQAYYEHCARIVAEAEQAELAVTRMQ 60 Query: 89 VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148 P G LR+ T L N + L FL YP++QI+++ ++ +D+ + D A+R + Sbjct: 61 SAPHGLLRV--TAPLAFNFMGSILAAFLTRYPEVQIEMVCTDRTVDLVEEGFDLAVRAGR 118 Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW- 207 SSSLI R+L +I A+P Y++ P S +EL H+ + FG + W Sbjct: 119 LPDSSSLIARRLGSIERGVMASPRYIQERGAPKSPKELAAHDCLLFGVGTGGNV----WS 174 Query: 208 LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT 264 L + +R + L VN + + G GIALLP+ + ++ + RI+ + + Sbjct: 175 LVSGNRSAEVSIRARLTVNEPDMLRAVTLAGFGIALLPNSLYAEDIATGRMQRILPEWSS 234 Query: 265 PSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V+ YP ++ K+ AF +F+ Sbjct: 235 PGASVHALYPVTRHHSPKVMAFVDFL 260 >gi|323530261|ref|YP_004232413.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323387263|gb|ADX59353.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 320 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F A GSFT AA ++ +++SR ++ LE +G +LF R R + LT+ G + Sbjct: 13 IELFCFAAELGSFTLAANAASVTPAAVSRSVARLEERLGARLFVRTTRQIRLTDAGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E +L + E+ P+G +RI+ G + L F YP + ++ Sbjct: 73 EQCREALSQLADAEREVTGEQTTPAGVVRISMPTPYGHYRVLPLLPAFRERYPHVYVETH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P SSL+ RKL M AAP YLK P ++ +L Sbjct: 133 LSNRNIDFADEGFDLAIRGRAPAD-SSLVARKLEDAEMVVVAAPGYLKRAGVPETVADLQ 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241 H I F +P W T+ P+ + + L SY L+ + G+G+ Sbjct: 192 THECIQFD--LPSSGRRLAW--TLQDPLDDGDV--LTSGSYATSGDALAGVTLARAGAGL 245 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V+D+ LV ++ + + YP A T +++AF +F+ Sbjct: 246 FQTYRFVVQDDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVDFL 297 >gi|152977767|ref|YP_001343396.1| LysR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150839490|gb|ABR73461.1| transcriptional regulator, LysR family [Actinobacillus succinogenes 130Z] Length = 296 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 10/295 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +GSFT AA +L +S+ ISR ++ +E + +L R R ++LTE G + Sbjct: 7 IQVFLAVTETGSFTQAAARLDISKPMISRYVNLMEDWLNARLLQRTTRKVSLTEAGEQAV 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + + EL S + G LR+ + G L + F++ +P + IQL+ Sbjct: 67 VFCRQIINLQQEMEQELAAQSGELRGGLRLTASNAFGSAHLVQAINAFMMCHPKLNIQLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + I++ + D A+R+ +L+ RKL H A P YL EP + +L Sbjct: 127 LSDTPINLVEERIDLAVRITNS-PDPNLVARKLAACHSVLAATPAYLAQAGEPATPDQLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + ++ K + R I S N L+++ GIA+LP Y Sbjct: 186 NHRYLAHANINRKSWK----FKQNGREIQIELTSRFATNDTLALLHAVQGHGGIAMLPRY 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDW 297 ++ + N L ++ D P F +Y YP K +++ +F+ + +DW Sbjct: 242 LISEQLKNGTLKPVLTDWQLPEFDIYALYPSRHKLPLAVRSLIDFLAQWFAVKDW 296 >gi|257485191|ref|ZP_05639232.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010904|gb|EGH90960.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 303 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 9/304 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + + +F V RSGSF AA L + +++SR++ LE ++G +L R R L LT Sbjct: 1 MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLQRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G H L +L +P G+LRIA D + +FL YP Sbjct: 61 QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S+Q L H ++ P + L D + E +++ N+ ++ + + G Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ + LV ++ S ++ YP + AF + K R Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296 Query: 296 DWKF 299 D F Sbjct: 297 DKAF 300 >gi|251791329|ref|YP_003006050.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247539950|gb|ACT08571.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 298 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 5/252 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++++ F V GS T AA QL + S ISR + LE+++G+ L +R R L L+ Sbjct: 1 MKVTLEEMQAFVAVVDGGSVTAAAGQLGQTASGISRALGRLESKLGMTLLHRTTRRLALS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + +V K+E + ++ KPSG+LRI T L Q+ + + EF YP Sbjct: 61 EEGQIFLQHARDVLQKVELAEEQIALRRRKPSGRLRINATASLMQHFIVPLIPEFRRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D++ ID+ D AIR+ + ++ SS+ R L + A+P YL P Sbjct: 121 CISLELNTDDEIIDLLEQRTDIAIRIGE-LRDSSIHARPLGATRLWILASPEYLNRHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LS++ L H L+ F + D PI + + ++ + Q G G Sbjct: 180 LSVEALSGHTLLGFTQSASLNLWPLRSALGDDYPI----VPTIAASNGEILRQLAQRGEG 235 Query: 241 IALLPDYIVKDN 252 I L D++ +D+ Sbjct: 236 IVCLSDFMTRDD 247 >gi|240947924|ref|ZP_04752358.1| LysR family transcriptional regulator [Actinobacillus minor NM305] gi|240297787|gb|EER48234.1| LysR family transcriptional regulator [Actinobacillus minor NM305] Length = 296 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 137/282 (48%), Gaps = 32/282 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF VA +GSFT AEQL +S+ ISR ++ +E + +LF R R + LT+ G Sbjct: 7 IKVFLTVAETGSFTATAEQLEISKPMISRYVALMEEWLNARLFQRSTRKVALTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++ +T+E+ ++ Q EL+ G LR+ ++ G L + FL L+P Sbjct: 67 LFCQRIANLTAEMEQEMMVQQSELR-------GALRVTSSQTFGTYHLVQMVNRFLQLHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQL+L+++ +D+ + D AIR+ + I RKL H A P YL P Sbjct: 120 KLNIQLLLNDQQMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPDYLAKFGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235 +EL +H+ ++ ++ K W T GE + S N +++ Sbjct: 179 TQPEELYQHHYLSHHNINRKA-----WKCTQ----GEQEVLLDLNSRFTTNDTQALLNSV 229 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + +GIA+LP Y+++ L ++ D P+F++Y YP Sbjct: 230 LDSNGIAMLPKYMLETELQQGKLQAVLSDWQLPAFSIYAMYP 271 >gi|221201853|ref|ZP_03574890.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221207641|ref|ZP_03580649.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221214663|ref|ZP_03587633.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221165553|gb|EED98029.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221172487|gb|EEE04926.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221178273|gb|EEE10683.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 349 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEQFPKVVPDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 127 LVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+L Sbjct: 187 EHPSLSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGGDIARGALVRLLPDFKLPQVEINIAYPSRRHLPAKVRTF 285 >gi|325121624|gb|ADY81147.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 299 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 145/298 (48%), Gaps = 29/298 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF HAAE L L S+++ + LE + ++L R R ++LT +G++ Sbjct: 9 MQIFVRVAEAGSFIHAAEALSLPASTVTSTVKNLEKYLQVRLLNRTTRRVSLTPEGAEYL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E T+ L + +P G+LR+ + +++ NL+EF YPDI + + Sbjct: 69 IQCREIIDLIEHTESNLTNAIKQPQGRLRVDMPAGIAHSVIMPNLQEFQQRYPDIYLMIG 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR+ +++S+L+ R L A+ YLK P + +L+ Sbjct: 129 VSDRQVDLIKEGVDCVIRMGN-LENSTLVARPLGEFRWVTCASAAYLKENGFPQTPNDLE 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQYC 235 H I ++ + R GE R +Q+N +++ ++ C Sbjct: 188 HHRAI-------------HYFSGSHRHAGEMRFVRNEEKKTVQMNGTVAVNETELYIKMC 234 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G+A L + +V D+ L+ +++D P V YP + ++ F ++I Sbjct: 235 LEGYGLAQLAERLVIDHLKEKRLIAVLQDWCPPPVAVTLLYPHQRFLSPAVRVFSDWI 292 >gi|260778886|ref|ZP_05887778.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260605050|gb|EEX31345.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 302 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/304 (25%), Positives = 152/304 (50%), Gaps = 28/304 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + VF V GSFTHAA+ L++++S++SR++ LE +G++L R R L LT + Sbjct: 1 MDLNAIAVFAQVVDCGSFTHAADALNMTKSTVSRKLVELEKHLGVRLITRSTRSLVLTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + ++ + ++E+ + G L + ++LG ++ + FL YP + Sbjct: 61 GERFYQSSLQMLEIMNQAELEVSANQDLIRGPLNVVLPVELGHQIMGSYINAFLKEYPSV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L N+++DI + D ++ + ++ S+L+ R L A+P Y Sbjct: 121 TINLELSNREVDIIAEGIDLYAQIGE-LEDSALVSRPLTKSQRVLVASPEY--------- 170 Query: 183 IQELDKHNLI-TFGDLIP--KCMEDFNWLATVDR--PIGEPRISC-------LQVNSYLS 230 L++H I + DLIP + +E FN + + I E S L+VN+ + Sbjct: 171 ---LEEHGGIESHRDLIPPHQMVEVFNRAVRLPKWHLIPEDGDSLQIDLPHRLRVNTITA 227 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 ++ C+ G GIA+LP++I ++ + L++++ + P V Y + + K F Sbjct: 228 CLKACLDGLGIAVLPEFICREHFASGRLIQLLPEYQMPEVLVSLVYADRQLMPKRKKVFI 287 Query: 288 NFIF 291 +F+ Sbjct: 288 DFLL 291 >gi|258626793|ref|ZP_05721601.1| transcriptional regulator, LysR family [Vibrio mimicus VM603] gi|258580933|gb|EEW05874.1| transcriptional regulator, LysR family [Vibrio mimicus VM603] Length = 300 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ P+++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPEVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S I RKL + M A P YLK C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTEVAMSTLATPAYLKQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHNTTQQTIDVPVD----GDLQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + ++ LV + D PS Y + +LK F F Sbjct: 245 FYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|212633465|ref|YP_002309990.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212554949|gb|ACJ27403.1| Helix-turn-helix, Fis-type [Shewanella piezotolerans WP3] Length = 314 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 139/276 (50%), Gaps = 15/276 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA+ L+L +S++SR++ LE E+ +KLF+R +R +TLT GS Sbjct: 4 EDITLFHRIVETGSLVEAADILNLPKSTLSRRLQLLEDELNVKLFHRQSRAMTLTASGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T+ + +LE T EL + + +G LRI + + EF+ L P + ++ Sbjct: 64 FYDKTTPMLAQLEQTMSELSGQNAEVAGHLRILIFPIPELIHITHAIFEFMDLNPGLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+ + D+ + D A L + ++ R ++T +H +A+P YL PL+ + Sbjct: 124 IIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHMITEMVHFFASPEYLAKTDIPLTQEC 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241 L +HN I F K FN D P G+ R ++ VNS + ++ ++G GI Sbjct: 184 LSEHNSILFRYPNGKI---FN-----DVPFGKDRTLAVKGNLCVNSLETCLEATLMGRGI 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 +++P + D+ L + E++ Y YP Sbjct: 236 SMMPLAFAQEHVDSGKLKMLFEEIEPYEGKCYLVYP 271 >gi|114776626|ref|ZP_01451669.1| putative transcriptional regulator [Mariprofundus ferrooxydans PV-1] gi|114552712|gb|EAU55143.1| putative transcriptional regulator [Mariprofundus ferrooxydans PV-1] Length = 300 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 14/290 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S W+ +R F VA +GS + AA L LSQ ++SR I LE+ + LF R ++GL LTE Sbjct: 3 SIPWELIRSFLAVADAGSLSAAARSLELSQPTLSRNIQTLESHTRLNLFKRTSQGLNLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G+ L ++ + ET ++ S + +G++RI+ +G LL + F +P Sbjct: 63 EGTALVEAAQQMNNSAETFARQVSGLSTELNGEIRISANEIVGIYLLPAVIAAFRKQHPA 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I++++ N+ +++ AD A+R+ P Q L+ R+L + + YA YL P Sbjct: 123 VHIEIVISNRASNLNKREADIALRMFHPKQ-PDLVARRLPDMPLGFYAHKSYLDQHGTPE 181 Query: 182 SIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 S EL +H LI F D I + D L+ +S + +Q + G Sbjct: 182 SFNELREHALIGFDQNRDFIDGARAMGFTFSNNDFE--------LRTDSLMLQIQLALQG 233 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVY-FCYPEALKNTGKLKAFR 287 GI + + P + RI+E P + C+ + N +++AF+ Sbjct: 234 CGIVGTHVGVARQWPEMKRILEWAPIPPLEFWVVCHADTQYN-ARIRAFK 282 >gi|226943206|ref|YP_002798279.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226718133|gb|ACO77304.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 311 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 134/296 (45%), Gaps = 23/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SGSFT AA L LS + +SR +S LE + +L +R R L +TE G + Sbjct: 7 MRAFVRVVDSGSFTAAAASLQLSNAQVSRLVSDLEASLQARLLHRTTRRLAVTEAGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ +E + + P G+LR+ + LG L + + LYP++ + L Sbjct: 67 QRCRNILAEVQDAAVEASGAHLTPRGRLRVHSITSLGTLQLAPLVARYTALYPEVSLDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D I L + + S L+ +++ +H AAP YL+ P Q+L Sbjct: 127 LSQRTPDLLEEGHDVVITLSRELPDSELVAQRVGDLHSVVCAAPQYLERHGTPKIPQDLH 186 Query: 188 KHNLITFGD-LIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H + D L P +D + TV RP G QVN ++ Q G G+ LL Sbjct: 187 EHRCLRLVDPLFPDRWVFQDGDGELTV-RPGGH-----FQVNVAEAMAQAAAAGMGVCLL 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P ++ L R++ ++Y YP R+F+ K R W Sbjct: 241 PSFVAAKALRQGTLKRLLPQYQLHQRSIYALYPS-----------RSFLDAKTRTW 285 >gi|154247221|ref|YP_001418179.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161306|gb|ABS68522.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 337 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 12/298 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F + S SF+ AA +L LS + +S +I LE +G +LF R R ++LTEQG Sbjct: 32 DNMKAFAMSVESESFSEAARRLRLSANVVSHRIQMLEKHLGCRLFNRTTRRMSLTEQGRV 91 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ + + E P G LR+ + LG+ L+ + +P+I ++ Sbjct: 92 YYEAITDALRLIDAAESNVSELGALPRGALRVTAPLHLGRRLVAQVSARYQEAHPEIDVR 151 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L +D+ + D A+RL + SS+I RK+ + AAP YL+ PL Q+ Sbjct: 152 LRLSEHTLDLIAESIDVALRL-ATFEDSSMIMRKVAQVERILCAAPAYLERAGVPLRPQD 210 Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H L+ F L + W+ T + R + P L+ + + + + G GI Sbjct: 211 LLSHQCLLLRFASL-----RELRWMLTDEGRDLAVPVTGHLEADDGDVLTVWALEGRGIV 265 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + P + V D LV +++ T+ YP K+KAF + + + R + Sbjct: 266 VKPRFEVADALAEGRLVPVLQAHPPKPATLAVLYPARQLVPLKVKAFADMLVDQGRRY 323 >gi|307255082|ref|ZP_07536900.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259519|ref|ZP_07541244.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306861955|gb|EFM93931.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866455|gb|EFM98318.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 297 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 25/303 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF +VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLMVAETGSFTATAERLVLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T + EL+ G LRIA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTQRGELR-------GSLRIASNAAFGSTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R ++ + R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNNPDPNA-VARPLFTCHSLLVATPAYLTQHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S QEL H + ++ K ++ ++ + E S L +N +++ + + G Sbjct: 179 HSPQELANHRYLAHANVNRK---EWTFIKGGQETVLE-LTSQLTINDTGALLNFTLADGG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 IA+LP Y ++ N L ++ D P++ VY YP + + +++F +F+ F Sbjct: 235 IAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLSQAVRSFVDFLVEEFEGK 294 Query: 295 RDW 297 RDW Sbjct: 295 RDW 297 >gi|289627430|ref|ZP_06460384.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646129|ref|ZP_06477472.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866700|gb|EGH01409.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 303 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + + +F V RSGSF AA L + +++SR++ LE ++G +L +R R L LT Sbjct: 1 MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G H L +L +P G+LRIA D + +FL YP Sbjct: 61 QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 121 LVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S+Q L H ++ P + L D + E +++ N+ ++ + + G Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ + LV ++ S ++ YP + AF + K R Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296 Query: 296 DWKF 299 D F Sbjct: 297 DKAF 300 >gi|127514147|ref|YP_001095344.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126639442|gb|ABO25085.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 303 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+++ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARNTGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ S + ++E + ++ + G LRIA + Q L+ F+ LYP++ Sbjct: 63 ALFYQHCSSISDEIEAAKATIENTHNDVFGSLRIAIPVSFSQELIASLCSSFMRLYPNVD 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D+ + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKANGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L +H+ I G + P + + R + +VNS + + Q + Sbjct: 182 QDLKEHSGILLGTSRSAPIWPLGKGERKTMVNFKRKV--------RVNSAIMVKQLVLDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + + K+ +LV ++++ F VY Y + + F +F Sbjct: 234 FGIAMLSNSVCKNELAGGSLVPLLQEWPMEPFKVYGVYSSRRQLATNISVFLDF 287 >gi|161524400|ref|YP_001579412.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350845|ref|YP_001946473.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198354|ref|ZP_03571400.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221208293|ref|ZP_03581297.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221215425|ref|ZP_03588389.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|160341829|gb|ABX14915.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189334867|dbj|BAG43937.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221164609|gb|EED97091.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221171941|gb|EEE04384.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221182286|gb|EEE14687.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 301 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 128/273 (46%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFVAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI G+ + + +F +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVPDFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPTTLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWTFQEDDKVVSIRVSGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V D+ LV +++ P ++ +P+ Sbjct: 242 WWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|118161424|gb|ABK64105.1| putative LysR family transcriptional regulator [Janthinobacterium lividum] Length = 305 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 6/288 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD +RVF + RS AA++L + S++SR++ E +VG +LF R+ G LT + Sbjct: 2 LDWDNVRVFLELTRSAGLVDAAKKLGIDHSTVSRRMRKFEEQVGTQLFDRNYVGYQLTPE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + EL E + SG++R+ T G +L +L +F YP I Sbjct: 62 GHRLMEYAETMESTVFAATEELGEHNRLLSGQVRLGATEGFGAIVLAPHLAQFCGRYPHI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + LI + + +S AD AI + +P+ S + KL + YA P YL S Sbjct: 122 SVDLIAVPRFVSLSKREADVAISIERPL-SGPYVVTKLSDYRLKLYATPAYLARHAPITS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +L +H +I + D + E L +D + + + S ++ G +A Sbjct: 181 VAQLAQHPIIGYVDDLVFSSE----LRYMDN-VAPDSLRAFRSTSVIAQYHAARAGQALA 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + + LV +++ I + P +N ++ A N++ Sbjct: 236 ILPCFVAQQSNELVPVLDGDIDLLRAFWMISPSERRNIARVSALWNYL 283 >gi|78066418|ref|YP_369187.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967163|gb|ABB08543.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 308 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 144/290 (49%), Gaps = 10/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA +G F+ AA ++ ++ SS++R + LE +G L R R +TLT+ G+ Sbjct: 7 LRAFIDVAETGGFSKAARRMGVATSSVTRLMDALEQSLGSALLTRTTRQVTLTDAGAAYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V L+ + ++ + G LR++ + G+ L ++ FL +P + + L+ Sbjct: 67 EQITRVLSDLDEADGSVSDTGIDAVGPLRVSMPVTFGRLCLGPHIASFLQQHPRVSLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D++ + D A+R+ P +LI +L H + A+ YL++ P S ++L Sbjct: 127 LSDSTLDLAAERIDVAVRIGSPANQPNLIVNRLAEHHRYVVASHDYLQSNGVPASPEDLR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + F ++ +++ T D + L VN+ + + + G GIALLP + Sbjct: 187 HHQCLRFA--YEAALQRWSFTRT-DGTVHVEINGRLSVNNSDVLREAVISGFGIALLPQW 243 Query: 248 IVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 +V+++ L R+ ED + P + VY Y +++ K+ A +F+ Sbjct: 244 LVEEDVVAGRLRRLFEDYSVNPLDQTVCVYAAYLPNRRHSRKVHALLDFL 293 >gi|241205403|ref|YP_002976499.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859293|gb|ACS56960.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 300 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 141/300 (47%), Gaps = 15/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 3 DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE L + L E+ KP G L+I+ + GQ + + F YP IQ Sbjct: 63 RAYYDRCSEPLAHLLDAEHALTETQRKPEGLLKISVPVIFGQEVFYEFVSAFQKTYPKIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L + N +D+ + D AIR ++ S+++ ++L + AAP YLK PL Sbjct: 123 VDLFVTNLFLDLIAENIDLAIRFGD-LKDSTIVAQRLGKSVRYLVAAPDYLKGRVLPLKP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +EL H + L+ + W R +S + + ++ + G GI Sbjct: 182 EELKDHQCV----LLNGRNGEAEWHLVSGRKSVRLHVSGPISSRDFDAVSAFTYRGHGIG 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298 LLP ++ L+R++ D + V+ YP T + R +FL+A + WK Sbjct: 238 LLPSTYCEEQIRKGELIRLLPDWSSEEIFVHAVYP-----TRRFLPSRLQVFLEALKAWK 292 >gi|87121640|ref|ZP_01077528.1| substrate-binding transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86163172|gb|EAQ64449.1| substrate-binding transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 309 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 141/293 (48%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V+AR GSFT AAE + S+S +SRQ++ LE ++G+ L R R LT+QG + Sbjct: 10 IQAFVVIAREGSFTKAAELMGCSRSYLSRQLNQLEAQLGVSLIIRTTRAQRLTQQGEAFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + + +K+ + ES+ + SG L I +G+ L+ + F LYP+I+I+L Sbjct: 70 QQCQQSLNKIHVAVNQALESASELSGPLNINCVGGYIGETLIMDLINGFSRLYPNIEIKL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 D++ +D+ D R+ ++ S+LI RKL+ I + A+P Y KN P+ +EL Sbjct: 130 DFDSRRVDLISGEFDFVFRM-GSLEDSALIARKLMDIEIVTLASPEYFKNHGRPIHPKEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240 +H IT G + + LA + E +QV S ++ G G Sbjct: 189 KEHACIT-GSIKNWRFVSSHELAADGSALAED----IQVKGPFSCKNGHAMVNNAKAGLG 243 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +P D L+ + +D S Y + + KLKAF+ ++ Sbjct: 244 IVRVPVMYCLDEIKEGKLLHLFDDWQAASVAFNLIYLQDAYQSKKLKAFKEYV 296 >gi|167561683|ref|ZP_02354599.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] gi|167568920|ref|ZP_02361794.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 324 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q + KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCIKIITEIAETDASFQVGNRKPSGALRVHMPSSLGRRLVIPALPIFHQRYPDIVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPREIAELA 185 Query: 188 KHNLITF 194 +H+ + F Sbjct: 186 EHHAVNF 192 >gi|104779325|ref|YP_605823.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95108312|emb|CAK13006.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 295 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L+ + S+++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEKHLGTALFVQHAQGYELTPS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + ++ P GK+R+ T +G + YP + Sbjct: 62 GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFQRYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + LI RKL + YA+ YL S Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLQS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H+ I + D + E L ++ P + + S ++ G GIA Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRTPNV-VFRSTSVIAQQHAAQAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIF 291 +LP+Y+ + +P LVR++ PS T+ + C L + +L+ +++ Sbjct: 235 VLPNYMARHDPKLVRVL-----PSETIQRSYWICTRRELHKSVRLRVVWDYLL 282 >gi|313499419|gb|ADR60785.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 308 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 135/299 (45%), Gaps = 16/299 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT A ++ +++SR IS LE +G +LF R R + LTE G + Sbjct: 13 IELFCLAAELGSFTAAGLAAGVTPAAVSRSISRLEERLGSRLFVRTTRSIRLTEGGRGYY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + + +PSG LR + G + + L EF YP +Q+ + Sbjct: 73 EQCRQALTQLVEAERVVTGQQQEPSGTLRFSLPTTYGHHRILPLLPEFRRRYPKVQVDIH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + D AIR+R S+LI R L + A P YL++ EP S++EL Sbjct: 133 LGNRNIDFVGEGYDVAIRVRAQ-PDSTLIARPLEDARLVVVATPDYLEHAGEPQSLEELA 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241 +H+ I F +P WL + G R L Y L + G+G+ Sbjct: 192 QHDCIQF--ELPSSGRRIAWLFDEE---GRER-EVLTEGGYVCSDDVLGGVTLAKHGAGL 245 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +IV+ +LV ++ S YP+ +L+AF +FI K R W Sbjct: 246 FQTYRFIVERELAEGSLVEVLRPFAGRSRPFTLLYPQGRHMPLRLRAFVDFIMDKRRQW 304 >gi|325521761|gb|EGD00507.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 330 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEHFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPSLSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|320324680|gb|EFW80754.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 306 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++ D + + +F V RSGSF AA L + +++SR++ LE ++G +L +R R L LT Sbjct: 4 VALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRKVQQLEIQLGTRLLHRSTRKLVLT 63 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G H L +L +P G+LRIA D + +FL YP Sbjct: 64 QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 124 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGM 182 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S+Q L H ++ P + L D + E +++ N+ ++ + + G Sbjct: 183 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 239 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ + LV ++ S ++ YP + AF + K R Sbjct: 240 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 299 Query: 296 DWKF 299 D F Sbjct: 300 DKAF 303 >gi|171322119|ref|ZP_02910982.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171092573|gb|EDT37886.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 301 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEDDRVVSIRVNGTMECSDGAVLHEWCLAGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V D+ LV +++ P ++ +P+ Sbjct: 242 WWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|257141237|ref|ZP_05589499.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 305 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V R SF+ AAEQL +S + +S++++ LE +G +L +R R + +TE G + Sbjct: 8 DDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G+++L L +F YP + ++ Sbjct: 68 VFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I + LI ++L T + A+P YL C P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARCGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + I + F W TV ++ L N +Q+ + G GI L Sbjct: 187 LAAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242 Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P L R++ D + P+ V+ YP L + K++ +F+ Sbjct: 243 --RSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291 >gi|83716204|ref|YP_438216.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650029|gb|ABC34093.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 335 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V R SF+ AAEQL +S + +S++++ LE +G +L +R R + +TE G + Sbjct: 38 DDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAGER 97 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G+++L L +F YP + ++ Sbjct: 98 VFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLDVR 157 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I + LI ++L T + A+P YL C P + + Sbjct: 158 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARCGTPRQLAD 216 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + I + F W TV ++ L N +Q+ + G GI L Sbjct: 217 LAAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 272 Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P L R++ D + P+ V+ YP L + K++ +F+ Sbjct: 273 --RSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 321 >gi|222084745|ref|YP_002543274.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722193|gb|ACM25349.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 309 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 146/297 (49%), Gaps = 22/297 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F VA SF+ AA +L +S S++S+ IS LE + + LF R R ++LTE G + Sbjct: 7 DGLVTFVTVAEEKSFSAAAVRLGVSPSAVSQSISKLEGRMRLALFNRTTRSVSLTEAGLR 66 Query: 66 -LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L RV V H L EL E+ KP+G LRI LQ L++FL YPDI++ Sbjct: 67 YLERVVPAV-HDLTAAAQELGEAVDKPAGLLRINVARSGYMIALQPILRDFLDTYPDIEL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM------HAYAAPHYLKNCR 178 ++ ++ +DI D +R L+QR +VT+ + H AAP YL Sbjct: 126 EVRIEGSLVDIVGQGFDAGVRF------GDLVQRDMVTVKIGPAISAHIIAAPGYLGRYG 179 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 P ++L HN I+F +E W D E ++ L +N ++ Q + Sbjct: 180 IPRHPRDLLHHNCISFRHSSSGQIE--RWEFEKDGEKIELAVNGRLILNDSAALTQAALD 237 Query: 238 GSGIA-LLPDYIVK--DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFI 290 G GIA ++ YI + D+ LVRI+ D +PS + YP+ + KL+A +F+ Sbjct: 238 GIGIAYMINGYIDRFLDDGRLVRILSD-WSPSLAGLALYYPDRRRVPAKLRALIDFL 293 >gi|330992242|ref|ZP_08316190.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter sp. SXCC-1] gi|329760441|gb|EGG76937.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter sp. SXCC-1] Length = 299 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D R+F V S SFT AA+ L + +SS+S I LE +G +L R R + T G+ Sbjct: 5 DLFRIFARVVESASFTRAADTLKMPRSSVSAAIQELENRLGTRLLARTTRSVAPTPDGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + + + P G LR +G+ L+ L FL YP+I I+ Sbjct: 65 FYGHCLRLIADMEEAEGLFRPDAAGPRGLLRANMPGRIGRLLVAPALPAFLRRYPEIDIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D DC +R+ P+ S LI R++ + + A+P YL P + Sbjct: 125 LGVTDRVVNLVEDGIDCVLRV-GPLGDSGLIARQMGELALVNVASPAYLARRGTPHHPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 LD H + + +ED+ W+ T+ R+S VNS +++ C+ G G+ Sbjct: 184 LDGHEAVRYAAPTTGRVEDWEWMEDGTLHTRALPGRVS---VNSAETLVACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V+ + LV +M + YP + +L+ F +++ Sbjct: 241 VPAYDVRHHIAAGELVDVMPRWRPEPMPMALLYPHRKHLSRRLQVFADWL 290 >gi|254488099|ref|ZP_05101304.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] gi|214044968|gb|EEB85606.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] Length = 295 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 15/290 (5%) Query: 6 DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL V + R GSF AAE L +S + +SR++ LE +G L R R +++T+ Sbjct: 2 DKLSVMHAFRRIVERGSFARAAEDLGVSPALLSREVKLLEESLGSTLLTRTTRSMSVTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + +++ + G L++ + GQ ++ L FL YPDI Sbjct: 62 GRLYFDEAIGILDAVTNIENRIRDGAGAVRGHLKVNASSSFGQTVIAPVLPGFLETYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L LD++ +D+ D +IR+R + +S+L+ RK+ T+ +A+P YL++ P Sbjct: 122 RLTLSLDDRVVDMIEGGFDVSIRIRAAMPNSALVARKIGTMRQRIFASPSYLEHAGVPQD 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240 +++ +H ++ F L+ + + D +P++ +V + L + + G G Sbjct: 182 PEDIRRHRVVGF--LLADHLTTWALTGPSDTYALDLDPKV---RVGNSLVLRDLLIAGQG 236 Query: 241 IALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I LPD+ V D P LVR++ PS ++ L K+ AF Sbjct: 237 IGTLPDF-VSDGPERRGELVRVLPGWELPSPEIFAVTASRLGMDTKVTAF 285 >gi|209517706|ref|ZP_03266543.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501881|gb|EEA01900.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 314 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 13 IELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDAGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E+ P+G LRI+ G + L F YP +Q++ Sbjct: 73 EQCRQALSQLMDAEREVTGEQTTPAGVLRISMPTPYGHYRVLPLLPAFRERYPQVQVETH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P S+L+ RKL M A P YLK P ++ +L Sbjct: 133 LSNRNIDFADEGFDLAIRGRAPA-DSNLVARKLEDAEMVVVATPAYLKRAGVPKTVADLQ 191 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I F +P W + DR + R S L+ + G+G+ Sbjct: 192 AHECIQFD--LPSSGRHLAWTFEDSHEDRDV-LTRGSFATSGDALAGVTLARAGAGLFQT 248 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V+D+ LV ++ + + YP A T +++AF +F+ Sbjct: 249 YRFVVEDDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVDFL 297 >gi|239814919|ref|YP_002943829.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239801496|gb|ACS18563.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 298 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 138/296 (46%), Gaps = 20/296 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++LR F VA +G + AA +L +S+S +SR++S LE E+G++L R RG LTE Sbjct: 1 MDIEELRTFVEVADAGGVSSAALRLGVSKSIVSRRLSRLEEELGVQLLARSTRGAALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G+ + V +I++ ++ P+ G+LR+A LG L E Sbjct: 61 GATFRDHAARV-----CAEIDVAREAILPAGDLRGRLRVAAPFSLGPTHFAPILAEMARR 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + IQ ++ +D+ + DCAIR+ + S+LI R++ +H A+P Y+K Sbjct: 116 HPGLHIQTCYSDRFVDLIAEGYDCAIRIGY-LPDSNLIARRIGPVHGKLVASPAYVKAHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + +EL H + G + D + TV RP G + ++ +++ G Sbjct: 175 SPETPEELLAHQALMQGTEA-WHLTDGDKTITV-RPQGR-----FKADNGTALVAAATAG 227 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA LPD++ + + LV +M P Y P K++ + Sbjct: 228 LGIAYLPDWLTHEHVASGALVPVMTRHPPPPAGAYVVRPPGQHPARKIRVLTELLI 283 >gi|117922006|ref|YP_871198.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614338|gb|ABK49792.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 331 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 139/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI N+L + F+ L+P + ++ Sbjct: 64 FYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPRLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I + +D+ + D A + + + L+ R + T + YA+P YL P + QE Sbjct: 124 VINSAESVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAEHGTPRTPQE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 ++ HN+ F K + W+ E R+ NS +++ + G GI Sbjct: 184 IESHNVSLFRLSNGKIFNEL-WIGAEQ----EVRVRGNFCSNSVEVAVEFALQGRGIVYA 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P +V + LV ++ ++ Y YP + + F +FI Sbjct: 239 PTEVVAEYVAAGQLVTLLPEIDPHPGEFYLAYPSRRYVSLASRRFIDFIL 288 >gi|115350177|ref|YP_772016.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115280165|gb|ABI85682.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 296 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + + F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G Sbjct: 5 NLNGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + S+ P GKLR++ + +G L L EF YPD++ Sbjct: 65 RHFYERCQRILEDFRDAEATVTASAQHPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L +++ +D+ D IR P+ SSL+ R+L A P YL P + Sbjct: 124 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRAP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240 +L+ H+ + + P + +W LA D G P + + N+ ++ + G G Sbjct: 183 HDLEAHDCVRY--CFPTTGKLQDWALAAAD---GTPLKLRTAMTCNNMEALRGAVMAGLG 237 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +PD++ + D LV +++D +P + + + KL+ F +F+ Sbjct: 238 IGYMPDFLARDALDTGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 290 >gi|330992266|ref|ZP_08316214.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp. SXCC-1] gi|329760465|gb|EGG76961.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp. SXCC-1] Length = 301 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 18/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F ++A +GS A + +S +++SR++S +E +G +L R +R LT +G +LH Sbjct: 8 LKFFCILAAAGSIAGCARAMGMSPAAMSRRLSAMEARLGTRLVTRTSRHFALTAEGQRLH 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H +E + EL + +P G LR+ +LG+ +L G + F+ YP++ + LI Sbjct: 68 EHAVRIMHDVEEAEAELTARADRPHGLLRVGVPSELGRKMLAGVVATFVEQYPEVTVHLI 127 Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L + +D+ D D AIR P + ++SL+ + V A+P Y P + Sbjct: 128 LSDAGLDVIDDGLDIAIRPGMPTDQEVMTTSLLNSRRVVC-----ASPEYCARKGLPATP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +L KH+ I LI + FN W+ R E ++ L +S + + V G GI Sbjct: 183 HDLLKHDCIC---LIRR-QRIFNEWVYLDGRVRKEVHVTPRLATSSSEVVHDWAVSGRGI 238 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290 AL + + D+ R++E + ++ T++ YP + + F +F+ Sbjct: 239 ALKVLWDIADDLKCGRLIECLSAYAWEDVTLHAVYPSRTHMPPRTRFFLDFV 290 >gi|167838477|ref|ZP_02465336.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 305 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 146/292 (50%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VV R SF+ AAEQL +S + +S++++ LE ++G +L +R R + +TE G + Sbjct: 8 DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ T ++ ++ ++ + P G LRI+++ G+++L L +F YP + ++ Sbjct: 68 VYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFNERYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I + LI ++L T + A+P YL P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARHGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + I + F W TV ++ L N +Q+ + G GI L Sbjct: 187 LAAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242 Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P L R++ D + P+ V+ YP L + K++ +F+ Sbjct: 243 --RSIWEAGPLLASGKLKRVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291 >gi|167614649|ref|ZP_02383284.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 305 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V R SF+ AAEQL +S + +S++++ LE +G +L +R R + +TE G + Sbjct: 8 DDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G+++L L +F YP + ++ Sbjct: 68 VFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I + LI ++L T + A+P YL C P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARCGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + I + F W TV ++ L N +Q+ + G GI L Sbjct: 187 LAAHQCLA----IKERDHPFGVWRFTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242 Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P L R++ D + P+ V+ YP L + K++ +F+ Sbjct: 243 --RSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291 >gi|3169721|gb|AAC17939.1| GstR [Bradyrhizobium japonicum] Length = 342 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 12/292 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F SGS + AA L S +++SRQIS LE G +L R R L LT+ G L+ Sbjct: 50 TFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLALTDDGRMLYER 109 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +++ + L S +PSG+LR++ +G+ L+ L +FL P + + L+L Sbjct: 110 AKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHACPSLSVDLLLV 169 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++++++ + A+R+ + I S L+ RKL + M A+P YL EP S +L +H Sbjct: 170 DRNVNLIEEDVHLALRVGR-IPDSQLVTRKLAEVQMIHCASPGYLARRGEPQSPSDLPRH 228 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246 + + F D F A G RI L VNS ++ G+GI +P Sbjct: 229 DCLVFSDAPGAATWRFGRDAK-----GGSRIRIAGRLWVNSLDALASAAENGAGIVRVPS 283 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V+ L R++ + ++ Y + + K++AF +F+ + R Sbjct: 284 WQVERQLAEGRLRRLLREHEPAPAPLHALYQPSRLGSAKIRAFIDFLVERWR 335 >gi|33603466|ref|NP_891026.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33577590|emb|CAE34855.1| probable LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 296 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 29/304 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F VA+ +F+HAAE L++ S++SR++S LE +G++L R R + LT Sbjct: 1 MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERGLGMRLLNRSTRRIDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ + + +LQ+ + +P G+LRI+ L Q L + EF LYP Sbjct: 61 EAGALYFERCRHIVEEARVAHEQLQDMAAQPKGRLRISLPTSLAQLFLTDVIPEFRSLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 DI+ L + +D + D +R ++P SSL+ R++V + H YAAP YL E Sbjct: 121 DIECDFDLSMRPVDPISNPFDLVLRFGQQP--DSSLVARQIVLMTQHLYAAPQYLALHGE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +L H L P + F++ L + D ++ +QV+ L+ +L Sbjct: 179 PRVPADLGHHEC-----LRPSMSDAFSYWVLQSGD------KVERVQVSGRLAANNIGML 227 Query: 238 G----SGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+ + P ++ D+ LVR++ D ++ P + K +AF Sbjct: 228 GRLASQGLGITP-LVMSDSMTRAIRQAGLVRVLPDWALTPIPLFALMPSRMV-PAKTRAF 285 Query: 287 RNFI 290 +FI Sbjct: 286 LDFI 289 >gi|253689926|ref|YP_003019116.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756504|gb|ACT14580.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 298 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 143/285 (50%), Gaps = 9/285 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + ++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTAEGSLFLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL ++ P G+LR+ ++ L +L+ L EF+ YP+I++ L Sbjct: 69 SRRILAEIEAAELELSQTKAVPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R P+ S L R+L T AAP YL P + +L +H Sbjct: 127 DRMVDVIEEGFDAVVRTGDPVD-SRLTARRLGTFRFLVVAAPDYLARYGCPQTPADLMQH 185 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + P + W L P + + N+ + + + + G GIA LPD+ Sbjct: 186 ACLHY--RFPNSGKLEPWALRLPPGEPELPLPTSMICNNIETRVCFALQGLGIAYLPDFS 243 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ L I+ D + S + +P + + K++AF +F+ Sbjct: 244 IREQLAGGQLQPILTDYVERSGVFHVLWPASKHPSPKVRAFVDFL 288 >gi|167569550|ref|ZP_02362424.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 307 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 11/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLNRTTRKVTPTQDGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S+V PSG LR+ +G+ ++ L FL YP I I Sbjct: 65 LYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPGFLDQYPQISID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DCA+R+ + S LI R + + + A+P YL P + + Sbjct: 125 LGVTDRTVNLIEERVDCALRV-GTLSDSGLIARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H I + + + W+ TV+R + R++ VNS + + C+ G G+ Sbjct: 184 LARHRPINYASPSSGRVAPWEWVEGDTVERLALQGRVT---VNSAEAYIACCLSGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294 +P Y V + LV ++ D + YP + + F +++ LKA Sbjct: 241 IPAYDVDTHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFHVFADWLETLLKA 296 >gi|116250546|ref|YP_766384.1| LysR family transcriptional regulator protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255194|emb|CAK06268.1| putative LysR family transcription regulator protein [Rhizobium leguminosarum bv. viciae 3841] Length = 293 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 136/289 (47%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + +G +R+ G + L + + +P++ Sbjct: 61 GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S+ AD AI L +P Q L+ KL + YA+ YL + P Sbjct: 121 KIQLVPVPRSFSLSLREADIAITLERPDQ-GRLVSSKLTDYTLGLYASRDYLASQGTPAD 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I L H I + DLI +F+ G ++++ + + G+GI Sbjct: 180 IDALKAHRRIGYVEDLIFTASLNFSGAVMRSWDAG------FEISTAIGQTEAVRTGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L DYI + P L RI+ +V + + Y E ++ ++++ +F+ Sbjct: 234 GILHDYIARQYPELQRILPEV-SIRRAYWTTYHETARDLLRVRSVADFL 281 >gi|70730265|ref|YP_260004.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344564|gb|AAY92170.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 304 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 141/291 (48%), Gaps = 9/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AA+ L + +S++ I LE +G++L +R R ++ T G+ Sbjct: 4 FNAMRVFTRIVELGGFAKAADSLQMPPASVTILIKQLEAHLGVQLLHRTTRQVSPTLDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + LE ++ + P G LRI + +G+ L+ L EF YP I++ Sbjct: 64 AYYQRCVRLLADLEESEAAFSLARHNPRGLLRIDMPVGIGRLLVIPALPEFSARYPQIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L+++ +D+ + DCA+R P SL+ R L + A+P YL+ P + Q Sbjct: 124 EIGLNDRPVDLIREGVDCALR-GGPALDESLVARPLAQLQQVTCASPGYLRQRGVPRTPQ 182 Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIA 242 EL H ++ F ++ K + A +P+ P R++ + YL+ C G G+ Sbjct: 183 ELQGHQMVEYFSNVSGKRYGLEFFFAGQLQPVQLPKRVAMNSADGYLAA---CEAGYGLI 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + L R++ED P+ + YP + +L+ F +++ Sbjct: 240 QTPYYHVARQLQDATLQRVLEDYPLPALPLTALYPPQRHLSTRLRVFIDWL 290 >gi|77362164|ref|YP_341738.1| LysR family transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76877075|emb|CAI89292.1| putative transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis TAC125] Length = 280 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 138/264 (52%), Gaps = 28/264 (10%) Query: 23 AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 AA+QL ++ S++S+QI LE EVG+ LF R R L+LTE G ++ ++ E T+ Sbjct: 4 AAKQLGMTTSAVSQQIKTLEQEVGLNLFNRSPRSLSLTEAGDIYYQSCKKLLQTAEQTKQ 63 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 +LQ + PSGKL++ + G LL LK + L+P + I+LIL ++ +D+ + AD Sbjct: 64 KLQYLTGIPSGKLKLVAPVGFGAGLLSEPLKRLIELHPKLNIELILTDEPVDMLKEGADL 123 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPLS-----IQELDKHNLITFGD 196 A+ + P+ S+LI RKL P+ L N PL+ I++L++H I Sbjct: 124 ALCI-GPLNDSNLIARKLAQW-------PYALCVNATHPLAINDQCIEQLNQHAHIAHSH 175 Query: 197 LIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD--- 251 L ++ P + PRI +VN+ S++Q G G A+LP+ V++ Sbjct: 176 L------NYQLFKPNSAPYTLNAPRI---KVNNMQSVIQLVCDGLGYAMLPEPEVRERIK 226 Query: 252 NPNLVRIMEDVITPSFTVYFCYPE 275 N L ++ +D ++TVY P+ Sbjct: 227 NKELKQLHKDWQRSNYTVYAVTPK 250 >gi|238895494|ref|YP_002920229.1| LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547811|dbj|BAH64162.1| LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 306 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 142/295 (48%), Gaps = 15/295 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE+ + ++L +R R L +T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQI Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++++D+ D DC +R + I SLI R + + + Y AP Y++ P + Sbjct: 124 DMGVSDREVDLIGDNVDCVLRGGQ-ITDQSLIARHVGDLQIGVYVAPSYVERLGAPAHPR 182 Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL + G L + + D L + + I L V+ + ++ ++G G+ Sbjct: 183 ELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNACLEAGLVGLGVIA 242 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290 LP+Y+ + + + P FT +Y +P KL+ F ++I Sbjct: 243 LPNYMAAAHQAV-----GALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWI 292 >gi|186472744|ref|YP_001860086.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195076|gb|ACC73040.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 304 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 143/290 (49%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SF+ +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVDANSFSKVSEMLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L P+G +R+ T+ L + LL L +F +P+I + Sbjct: 64 LFYERCVRILAEVADAESSLSNKRETPAGTIRVDTSGTLARALLLPVLDDFYQRFPEIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ ++ SSL+ +++ + + A+P YL P +++ Sbjct: 124 RLGLADRNIDLIQDGVDCVIRM-GMLEESSLVAKRIGSSRIVTCASPAYLDKHGTPRTLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL +H + + + + F + V D + S L VN + LG GI Sbjct: 183 ELAEHQAVNY--VSARTGRTFPFEYNVGDEVVKVQMKSVLAVNDGSVYINAGALGHGIIQ 240 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + N L I+ + +PS + YP + +L+AF +++ Sbjct: 241 PSRFMVAELINQGALREILTEYDSPSTPLSIVYPHRRNLSSRLRAFVDWV 290 >gi|107023527|ref|YP_621854.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690610|ref|YP_836233.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105893716|gb|ABF76881.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116648699|gb|ABK09340.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 294 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L LS S+I ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +++ + EL +S P G+LR++ TI LL L +F+ YP+I++ + Sbjct: 69 CRRVIAEIDAAEQELTQSVEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R P S L R L H A+P YL+ P + +L + Sbjct: 126 SDRIVDVIDEGFDVVLRTGHPTD-SRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQ 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W R P + V N+ + + + + G GIA LP++ Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRAPRAGTPPEVPVSMVSNNAETRLCFALRGLGIACLPEF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+D + L +++D + Y +P KL+AF +++ Sbjct: 243 FVRDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYM 288 >gi|146311693|ref|YP_001176767.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145318569|gb|ABP60716.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 301 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 8/288 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AA+ L+L +++S+ + LE +G++L +R R + T +G + Sbjct: 7 MRAFTRVVETGNFTRAADSLNLPNATLSKLVKSLEAHLGVRLLHRTTRRVVATPEGQDYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S V +E S +P G LRI + +L L +FL YP+I+I L Sbjct: 67 EKASRVLIDIEEIDTSFSASQRRPKGYLRIDIGGSTAREVLIPALPDFLKRYPEIKIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ +D+ DC IR P+ SSLI R + M A P YLK P EL Sbjct: 127 VSDRPVDLISGNVDCVIR-GGPLNDSSLIARHIGDATMVTCATPGYLKAAGVPAYPDELR 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 + H L+++ L P F + ++ + E + + VN + + V G GI Sbjct: 186 NGHKLVSY--LSPLTGRAFPFRFIIEGEMRELKTQHHIGVNESNAHLAAAVAGMGIIQTF 243 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y KD + LV I++ S+ + YP+ T +L+ F +++ Sbjct: 244 CYAAKDALKDGTLVEILQAWRPASYPFHVVYPQNRHMTHRLRVFIDWL 291 >gi|254469575|ref|ZP_05082980.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211961410|gb|EEA96605.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 298 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 131/277 (47%), Gaps = 12/277 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR ++ V GSF AA+ ++S + + R +S LE + ++L R R + +TE Sbjct: 2 DKLRKMALYCRVVELGSFVAAAQDQNVSPAIVGRHVSDLEAMLKVRLINRTTRSMEVTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + ++ +L + ++ E SG +R+A LG L ++ F YP+ Sbjct: 62 GHRYYQGCKISLAQLAALEQDMTNEEGEALSGIIRLAAPEGLGAPHLLSAIESFQGFYPN 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I L+LDN D + D +IRL +Q SSLI RKL + YAAP YL P Sbjct: 122 ILFDLVLDNGQTDFISENVDLSIRLAISMQDSSLIVRKLTDTRLCFYAAPSYLAKHGTPK 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 +++LD+H + FG +W D + + R+ + VN + + G G Sbjct: 182 KLEDLDQHACLAFG----ASRFGDSWPIVTDMGLSKYRLPWRVVVNQTQFYRKALMKGMG 237 Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYP 274 I LLP+ +V ++ +L + DV P +Y YP Sbjct: 238 IGLLPEIMVAEQAEDGSLTPLSLDVTLPEVGIYTVYP 274 >gi|149374844|ref|ZP_01892617.1| probable transcriptional regulator [Marinobacter algicola DG893] gi|149360733|gb|EDM49184.1| probable transcriptional regulator [Marinobacter algicola DG893] Length = 304 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 12/259 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GSF+ AA L+ S+ S+ I+ LE +G KL +R R + LT +G + Sbjct: 12 MEIFSTVVEQGSFSKAARVCRLTPSAASKAITRLEKRLGTKLIHRSTRQMQLTAEGRWFY 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + SSV+P+G LRI + +G L + +FL YP I ++L Sbjct: 72 ERCRHILSDLEEAE-QGASSSVEPTGHLRITASFPVGHGFLIPIVTKFLARYPGITLELS 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ ++ D AIR P+ +S+L+ RKL M AP YL+ P++++EL Sbjct: 131 LTDQVVNLLAEHTDVAIR-NGPLGNSNLVARKLGETRMVIVGAPEYLERRGVPVTLEELR 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALLP 245 HN + F W T D E P+ S L V+ ++ + + G G+A L Sbjct: 190 THNRLGFN----FSRHTATWPLTFDGEQTELAPQGSLL-VSDGETMRKMAMEGVGLARLT 244 Query: 246 DYIVKDN---PNLVRIMED 261 ++V ++ LV +ME+ Sbjct: 245 RFLVDEDIRQGRLVPVMEE 263 >gi|83720634|ref|YP_441189.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|257140145|ref|ZP_05588407.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83654459|gb|ABC38522.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 324 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G +L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVEANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q KPSG LR+ LG+ L+ L F YPD+ + L Sbjct: 67 EHCIKIITEIAETDASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDVVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP+ I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPMEIAELA 185 Query: 188 KHNLITF 194 H+ + F Sbjct: 186 AHHAVNF 192 >gi|331016585|gb|EGH96641.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 303 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 140/300 (46%), Gaps = 9/300 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + +F V RSG+F AA QL + +++SR+I LE ++G +L R R L LT Sbjct: 1 MIADLNDVALFVQVVRSGNFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + + L + +L +PSG++RIA D + +FL YP Sbjct: 61 QKGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ A+P YL Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S++ L H+ ++ P + L D I + ++S N+ ++ + + G Sbjct: 180 PDSLESLQAHDCVSAA--YPGGSTTWRMLGP-DAKIHDVQLSSRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ N LV ++ S ++ YP + + AF + K R Sbjct: 237 LGIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296 >gi|330806843|ref|YP_004351305.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374951|gb|AEA66301.1| Putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 292 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 141/289 (48%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++VF V GSF+ A +L+L Q ++S+QI LE +G LF R R L LT+QG Sbjct: 4 FDAMQVFVRVVERGSFSAVARELNLGQPAVSKQIRALEQHLGGALFARSTRHLALTDQGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ L+ ++ + +G LR+A + G+ + + EFL +P ++I Sbjct: 64 RFYAESKDILASLDAARLSFASGQEQIAGLLRVAAPVSFGRLCIAPLVGEFLARHPQLRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L +++ D+ + D AIR+ ++S L+ L YA+P YL+ +PL+ Sbjct: 124 DLRLSDQNEDVLKENIDLAIRI-GVVKSEGLVAISLGDSPRRVYASPAYLQQHGKPLAPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L HN + F L + F+ + ++C NS +I + + G G++L Sbjct: 183 DLVGHNCLAFTLLEHYDVWRFDQDGRQHSVTIKGNVTC---NSSEAIREMVLSGLGVSLS 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + + ++ D + V + + + + +AF +F+ Sbjct: 240 PQWLFAADIRQGTVCTVLADYQPLALPVSAVFSHDRRRSARTRAFVDFL 288 >gi|206563054|ref|YP_002233817.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198039094|emb|CAR55057.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 296 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 7/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F +AR+G+ AA QL++ Q+++ R+I+ LE E+ +LF R LT Sbjct: 1 MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPTLYVLTTA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + T + + + +G +RIATT LG+ + + + I Sbjct: 61 GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIARVRRKHAGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + +++ AD AIR +P +S LI R+L + YA+ YL EP++ Sbjct: 121 DVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEPVA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 D H+L+ + + M W A P R+ Q +S + +++ + G GIA Sbjct: 180 GSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEATLAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 LP + P LVR+M F V+ L T +++A Sbjct: 235 ELPCFRADTEPELVRLMPQRCN-HFDVWLVAHTDLYKTARVQA 276 >gi|170736901|ref|YP_001778161.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819089|gb|ACA93671.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 307 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 148/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++++ LE ++G +L +R R +T+T+ G + Sbjct: 8 DDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LR++++ G++++ L +F YP + ++ Sbjct: 68 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L T H A+P YL P S+ + Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDDI-ADHLIARRLATNHRVLCASPDYLARRGTPRSLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233 L H+ + + D P G R++ ++V LS +Q Sbjct: 187 LTSHDCLAIKER--------------DHPFGVWRLNVRGETVTVKVGGALSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + + L R++ + P+ ++ YPE + + K++ +F+ Sbjct: 233 WALAGRGIVLRSIWEAAPLIERGELCRVLPEATQPA-NIWAVYPERVAASAKVRVCVDFL 291 >gi|295095965|emb|CBK85055.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 295 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 21/282 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS ISR + LE +G++L R R L+LT G Sbjct: 7 NYNELYLFIQVVREGSFTAAAQRLGLAQSGISRSVRELEERLGVRLLVRTTRKLSLTHAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ + L+T L PSG +RI + + L L F YPDI+ Sbjct: 67 EQLYQTAGSAFDALDTGLTRLAHYRQTPSGTVRINASQHAIEKCLLPKLAIFKQRYPDIR 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+ +++ +DI + D +RL + + R + M AAP + + P + Sbjct: 127 LELMNESRFVDIIAERFDAGVRLGPEVGQGMIAVRITPDMEMAVVAAPAHFRRYGFPQTP 186 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235 +LD H I F D + W D RP G+ S +SY+ + Sbjct: 187 ADLDAHPCIAYQFAD-----GNHYQWELVQDGKHVTHRPEGQWAFS----DSYME-AEAA 236 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LG G+A +P +V D+ L+R+++ +Y YP Sbjct: 237 RLGLGLAYVPVELVADDLERGTLIRVLQRYSLRMDGLYLYYP 278 >gi|291619366|ref|YP_003522108.1| YhjC [Pantoea ananatis LMG 20103] gi|291154396|gb|ADD78980.1| YhjC [Pantoea ananatis LMG 20103] gi|327395689|dbj|BAK13111.1| putative HTH-type transcriptional regulator YhjC [Pantoea ananatis AJ13355] Length = 299 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 131/270 (48%), Gaps = 5/270 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GSFT AAE L L + S+SRQI LE ++G +L +R R + LT+ G + Sbjct: 7 MQVFVRVAEMGSFTAAAESLGLPKGSVSRQIQALENQMGTRLLHRTTRRVQLTQDGLVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + Q SGKLR+ + + +L+ L EFL YP ++I+L Sbjct: 67 DRCLDLLSMISDMDSLFQHDPATLSGKLRVDMSAAMATDLILPRLPEFLQHYPGVEIELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + DC IR+ + ++ S LI R++ T + A+P YL P+ ++EL Sbjct: 127 SNDRQVDVIREGFDCVIRVGE-LKDSGLIARRIGTHTLINCASPGYLSRFGRPIRLEELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H ++ + + + + F + + VNS + C+ G GI +P Sbjct: 186 QHAMVHYSQQLGQPAQGFEFFDGKQCHYVHTG-GVVTVNSTETYRAACLAGLGIIQVPTV 244 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + ++ LV ++ ++ YP Sbjct: 245 GIHKYLESGELVEVLHAFPAKPMPIHLLYP 274 >gi|170695066|ref|ZP_02886214.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170139918|gb|EDT08098.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 302 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 135/272 (49%), Gaps = 12/272 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F A+S SFT AAE+L L++S++ + I+ LE +G +LF+R R ++LT G Sbjct: 12 IFVTAAKSRSFTDAAEELGLTKSAVGKAIAKLEDRLGAQLFHRTTRSISLTADGDAYFAA 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ T + L + +P G+LRI G+ +L L + +PD+Q + Sbjct: 72 CASALDEISTAETALGPGNQRPVGRLRIDMPAAFGRRILVPILLDIGRKHPDLQFTMTFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID + D IR + SS L+ R+L + M A+P YL P ++++L H Sbjct: 132 DHLIDPIEEGVDLVIRFGELESSSGLVARRLTSQRMVIAASPDYLAQRGTPSALEDLKNH 191 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPD 246 + I + + +W VD + RIS Q++ SI++ + G G+ +P Sbjct: 192 SCIVGH----RRGQPLSWRVNVDGEVS--RISPPATHQISDGDSIVEAALAGLGLCQMPM 245 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 +++ ++ L+ ++ED+ + V+ +P+ Sbjct: 246 SLLRPHLESGKLISVLEDISSEFIDVHAVWPK 277 >gi|33598521|ref|NP_886164.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33574650|emb|CAE39302.1| probable LysR-family transcriptional regulator [Bordetella parapertussis] Length = 296 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 29/304 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F VA+ +F+HAAE L++ S++SR++S LE +G++L R R + LT Sbjct: 1 MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERGLGMRLLNRSTRRIDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ + + +LQ+ + +P G+LRI+ L Q L + EF LYP Sbjct: 61 EAGALYFERCRHIVEEARVAHEQLQDMAAQPKGRLRISLPTSLAQLFLTDVIPEFRSLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 DI+ L + +D + D +R ++P SSL+ R++V + H YAAP YL E Sbjct: 121 DIECDFDLSMRPVDPISNPFDLVLRFGQQP--DSSLVARQIVLMTQHLYAAPQYLALHGE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +L H L P + F++ L + D ++ +QV+ L+ +L Sbjct: 179 PRVPADLGHHEC-----LRPSMSDAFSYWVLQSGD------KVERVQVSGRLAANNIGML 227 Query: 238 G----SGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+ + P ++ D+ LVR++ D ++ P + K +AF Sbjct: 228 GRLASQGLGITP-LVMSDSMTRAIRQAGLVRVLPDWALTPIPLFALMPSRMV-PAKTRAF 285 Query: 287 RNFI 290 +FI Sbjct: 286 LDFI 289 >gi|298486740|ref|ZP_07004796.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158607|gb|EFH99671.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 303 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + + +F V RSGSF AA L + +++SR++ LE ++G +L +R R L LT Sbjct: 1 MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G H L +L +P G+LRIA D + +FL YP Sbjct: 61 QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 121 LVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGL 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S+Q L H ++ P + L D + E +++ N+ ++ + + G Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIALLP +++ + LV ++ S ++ YP + AF + K R Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296 Query: 296 DWKF 299 D F Sbjct: 297 DKAF 300 >gi|222149796|ref|YP_002550753.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221736778|gb|ACM37741.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 309 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 154/296 (52%), Gaps = 24/296 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121 +R +++ +++ ++E++V SGK+RI T ++GQ+L+ +F L +PD Sbjct: 66 YRSAADILKEIDNLADLVRENNVGISGKIRITVPRSFTDAEVGQSLI-----DFALQHPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+++ +++ +D+ + D AIR+ K ++ S +I RKL +A A+P +L+ Sbjct: 121 LSIEIVAEDRFVDLIEEGFDLAIRVTK-LEDSGMIARKLADFRSYACASPVFLEKYGPLT 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVL 237 Q+L K + LI N L + +P GE IS L+VNS + ++ + Sbjct: 180 HPQDLSKVPV-----LIDTNTRGHNSL-RLRQPDGEAFTVNISGPLEVNSPQTTLRGALS 233 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIALLPD++ + ++ L+ I ED + +Y YP K++A +F+ Sbjct: 234 GLGIALLPDFVARRHIESGALISIFEDYMPSGSGIYAVYPHRRYLPAKVRALVDFM 289 >gi|170701865|ref|ZP_02892794.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133223|gb|EDT01622.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 296 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 13/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G Sbjct: 7 NGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRH 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + S+ +P GKLR++ + +G L L EF YPD+++ Sbjct: 67 FYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELD 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ +D+ D IR P+ SSL+ R+L A P YL P + + Sbjct: 126 LDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRAPHD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIA 242 L+ H+ + + P + +W LA D G P + + N+ ++ + G GI Sbjct: 185 LEAHDCVRY--CFPTTGKLQDWALAARD---GTPLKLRTAMTCNNMEALRGSVMAGLGIG 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +PD++ + D LV +++D +P + + + KL+ F +F+ Sbjct: 240 YMPDFLARDALDTGALVTVLDDYRIAPGQFSIMWPSSRQLSPKLRVFVDFL 290 >gi|33595174|ref|NP_882817.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33565251|emb|CAE36049.1| probable LysR-family transcriptional regulator [Bordetella parapertussis] Length = 329 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 26/301 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++S+++ + LE + ++L R R + T G+ Sbjct: 4 FDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ LE + L +S P G+LR+ +L L F YPDI + Sbjct: 64 AYYERVRQLLADLEDAETSLSGASATPGGRLRVDVPSPFASTILVPALPAFQARYPDILL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++++D+ + DC IR + I + SL R + + + YA+P YL P + Sbjct: 124 HLGVSDREVDLIDENVDCVIRGGQ-IGNLSLAARHVGDLQLGVYASPGYLARAGVPAHPR 182 Query: 185 ELD--KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL +H +I F L P M R + RI ++ L L Sbjct: 183 ELQDAQHRIIGFSWSRARRLFPCAM----------RRRADERIEVAGRHALLLDEGNAYL 232 Query: 238 GSGIALL-----PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +G+A + P Y+ + + L+R+ D +Y YP+ + KL+ F ++ Sbjct: 233 AAGLAAMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRVFIDW 292 Query: 290 I 290 I Sbjct: 293 I 293 >gi|126175718|ref|YP_001051867.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|152999353|ref|YP_001365034.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|160873968|ref|YP_001553284.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|304411136|ref|ZP_07392751.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307306431|ref|ZP_07586174.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|125998923|gb|ABN62998.1| transcriptional regulator, LysR family [Shewanella baltica OS155] gi|151363971|gb|ABS06971.1| transcriptional regulator, LysR family [Shewanella baltica OS185] gi|160859490|gb|ABX48024.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|304350329|gb|EFM14732.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306910722|gb|EFN41150.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|315266202|gb|ADT93055.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 303 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + +S+ISR+I+ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + DI + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKLKGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +EL H+ I G + P +A R + +VNS + + Q + Sbjct: 182 KELSLHSGILLGTSRSAPIWPLGKGSRKTMANFQRKV--------RVNSPIMVKQLAMDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L + K N LV I+++ F VY Y + + F +F F+K Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDF-FVK 290 >gi|332978482|gb|EGK15194.1| LysR family transcriptional regulator [Psychrobacter sp. 1501(2011)] Length = 301 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 9/272 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR VF V GSF+ AA QL ++ S++S+QI LE ++G+ L +R R L+LTE Sbjct: 4 DNLRGMAVFASVVGHGSFSGAARQLGITTSAVSQQIRSLEKDLGVVLLHRSTRKLSLTEA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + +V + +I++ + + +G LRIATT +LG N + L ++ + D+ Sbjct: 64 GASFYESAKDVVTAADQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHDDL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + DN ID+ + AD AIR+ I+ SS+ L + A+PHYL+ + Sbjct: 124 SIHFLADNHYIDMIDERADIAIRMSPQIKDSSVATYPLAEVKQMLVASPHYLRQHEKITK 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L H LI+ + DFN + T + + P S +Q N+ G G+ Sbjct: 184 PKDLVSHQLISIDLMKDPNTLDFNSIETGKKNRVKLP--SRIQTNNVFLATTLAKEGHGL 241 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270 + V+ + LV ++ + P F +Y Sbjct: 242 VRVMSLDVQKELASGELVEVIPEYSLPHFVLY 273 >gi|237808400|ref|YP_002892840.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237500661|gb|ACQ93254.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 303 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 10/287 (3%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V GSF AA++L +S S+ IS LE +G++LF R R L TE G + Sbjct: 8 RMFVAVMDVGSFASAAQRLGISSGQASKLISRLEQNLGVQLFKRSTRALAATEIGLAYYE 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + +++ +S PSGK+RI+ + G L +L F YP I++ + Sbjct: 68 RVKRLLDDYDALNDDIRNTSDSPSGKVRISAPVTFGSMQLATHLIAFAQRYPQIELDVSF 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +++ D D A+R+ K + SSLI RKL I + A+P YL P EL + Sbjct: 128 SDRLVNVVDDGFDLALRIGK-LSDSSLIARKLCDIRVIHVASPGYLNERGMPAHWHELSQ 186 Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H I L + F W ++ I E P L+ ++ ++ G GIA LP Sbjct: 187 HECI----LDTNFRDPFIWPFLDQNKVIDEYPVNGRLKFSNAEVCLKAACAGLGIARLPS 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ D +V ++ + P +Y YP A K +A +F+ Sbjct: 243 FVAADALRAKEVVPVLTNCELPILGLYALYPPAKHLARKSRAVIDFL 289 >gi|167571846|ref|ZP_02364720.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 305 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 149/302 (49%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VV R SF+ AAEQL +S + +S++++ LE ++G +L +R R + +TE G + Sbjct: 8 DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ T ++ ++ ++ + P G LRI+++ G+++L L F YP + ++ Sbjct: 68 VYAWTEKILDDVDHLVEDVSTTRNVPRGTLRISSSFGFGRHVLAPALLNFNERYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I + LI ++L T + A+P YL P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPAYLARYGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233 L H +C+ + D P G R+ S ++V LS +Q Sbjct: 187 LAAH----------QCLA----IKERDHPFGVWRLTTRGETSSVKVGGALSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GI L I + P L R++ D I P+ V+ YP L + K++ + Sbjct: 233 WALAGRGIVLRS--IWEAGPLLASGELKRVLPDAIQPA-NVWAVYPARLAASAKVRVCVD 289 Query: 289 FI 290 F+ Sbjct: 290 FL 291 >gi|170731500|ref|YP_001763447.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169814742|gb|ACA89325.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 294 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G + Sbjct: 9 AFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + S+ +P GKLR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR P+ SSL+ R+L A YL P + +EL+ H Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATLAYLAQAGTPRTPRELEAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + P + +W D + + N+ ++ + G GI +PD++ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLTLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D + LV +++D +P + + + KL+ F +F+ Sbjct: 245 RDALEHGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|167562312|ref|ZP_02355228.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 306 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 11/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLNRTTRKVTPTQDGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S+V PSG LR+ +G+ ++ L FL YP I I Sbjct: 65 LYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPGFLDQYPQISID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DCA+R+ + S LI R + + + A+P YL P + + Sbjct: 125 LGVTDRTVNLIEERVDCALRV-GTLSDSGLIARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H I + + + W+ TV+R + R++ VNS + + C+ G G+ Sbjct: 184 LARHRPINYASPSSGRVAPWEWVEGDTVERLALQGRVT---VNSAEAYIACCLSGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294 +P Y V + LV ++ D + YP + + F +++ LKA Sbjct: 241 IPAYDVDTHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFHVFADWLETLLKA 296 >gi|229523106|ref|ZP_04412518.1| transcriptional regulator [Vibrio cholerae TM 11079-80] gi|229339956|gb|EEO04966.1| transcriptional regulator [Vibrio cholerae TM 11079-80] Length = 302 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V GSF+ AA++L ++S++S+++S LE ++GI+L R R L+LTE G Sbjct: 5 FSSIPVFVAVVECGSFSLAAKKLKTTKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGE 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + S+ + E +P GKL+I + G + + +F+ +YP ++I Sbjct: 65 RYYYHVSQALSYARQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEI 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+++ +D+ D AIR+ + +S+L+ ++LVT A+P YL EP Sbjct: 125 DLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCKSVLCASPEYLARYGEPEKPA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN + + F+ + I P+ L VN+ +I + + G GIA L Sbjct: 184 DLLEHNCLVYTYFRGGNEWTFHHQQQEVKVI--PK-GNLTVNNSEAIRRASLAGLGIAQL 240 Query: 245 PDYIV-KDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V KD L +M P VY +PE K++AF +F+ Sbjct: 241 PTFLVSKDLAGGVLQSVMTHYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289 >gi|119899911|ref|YP_935124.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119672324|emb|CAL96238.1| probable transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 302 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 35/286 (12%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD L F VA GSF AAE+L +S S +SRQ++ LE + +LFYR R ++LTE G Sbjct: 11 WDGLEAFVAVADCGSFGGAAERLGVSTSHVSRQVARLEERLQARLFYRSTRRVSLTETGQ 70 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + +Q+ P G LR+ + G+ + + +F+ YP++++ Sbjct: 71 VFLQHCRRLQDGFDEALHAVQDLGGAPKGLLRMTCAVTYGERFIVPLVNDFIERYPELRV 130 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L N +DI + D AIRL + + SSL+ ++ M+ AAP YL P ++ Sbjct: 131 EIELTNAMLDIVREGYDLAIRLGR-LTDSSLVATRIAPRVMYLCAAPSYLARRGTPQTLA 189 Query: 185 ELDKHNLI-------TFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIM 232 EL H+ + F D + E F NW + NS +++ Sbjct: 190 ELAGHDCLLGSADTWVFQD---QGREHFLRVQGNW----------------RCNSGEAVL 230 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + G G+A LPDY V ++ L ++ P V+ +P+ Sbjct: 231 DAALRGFGLAQLPDYYVLEHLREGRLRALLTAYQPPHTAVWALFPQ 276 >gi|322616203|gb|EFY13119.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620219|gb|EFY17089.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623054|gb|EFY19896.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628344|gb|EFY25132.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634750|gb|EFY31481.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638684|gb|EFY35379.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641033|gb|EFY37679.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645489|gb|EFY42017.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651625|gb|EFY47997.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654472|gb|EFY50794.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658646|gb|EFY54906.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665089|gb|EFY61277.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667833|gb|EFY63993.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671755|gb|EFY67876.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677199|gb|EFY73263.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680138|gb|EFY76177.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685434|gb|EFY81430.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196031|gb|EFZ81195.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199949|gb|EFZ85037.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202453|gb|EFZ87494.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205754|gb|EFZ90717.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210269|gb|EFZ95167.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216741|gb|EGA01465.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223241|gb|EGA07581.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223648|gb|EGA07959.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231943|gb|EGA16050.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234470|gb|EGA18557.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237921|gb|EGA21980.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243478|gb|EGA27497.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249476|gb|EGA33390.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253784|gb|EGA37611.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259092|gb|EGA42739.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261233|gb|EGA44821.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266598|gb|EGA50085.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271323|gb|EGA54749.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 302 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 142/292 (48%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + ++ V GSF AAE L L + +++R + LE ++G+KL +R R +++T++G + Sbjct: 7 EAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +L+ + L + P G+LR+ I L + ++ L +F YPDI+I Sbjct: 67 FYQRCLSLLSELDDVR-RLFSRTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIV 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DC IRL + + SS + R+L T M AAP YL P SI E Sbjct: 126 LGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184 Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241 L H + F ++ W TVD I ++ S + V++ + + + G GI Sbjct: 185 LMTSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGILH 242 Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P +I L I+ D P V YP+ K++ F +++ Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292 >gi|75674686|ref|YP_317107.1| LysR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419556|gb|ABA03755.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi Nb-255] Length = 309 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 11/291 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V SFT AA+ L L +SS+S + LE+ VG +L +R R + T G+ Sbjct: 5 DLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLHRTTRKVVPTPDGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +E T+ ++S+ +P GKL++ LG+ ++ L +F YPDI++ Sbjct: 65 FYKRCLRLLADVEETEALFRQSARRPVGKLKVDVPGRLGRLIIVPALPDFFARYPDIELD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D +R+ + S LI R + + + AAP YL P + + Sbjct: 125 LGVTDRAVNLVEQSVDGVLRV-GVLSQSGLIARSVGVLPLINVAAPSYLGRHGIPETPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 LD H + + +ED+ W+ V + RI+ +Y++ C L G G+ Sbjct: 184 LDTHLAVRYASPSTGRIEDWEWIDNGHVRTRVVAGRITVNSAEAYIA----CALAGLGMI 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y VK + LV I+ F + F YP + +++ F +++ Sbjct: 240 QIPAYDVKPHLAAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWL 290 >gi|71065615|ref|YP_264342.1| LysR family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71038600|gb|AAZ18908.1| putative transcriptional regulatory protein LysR family [Psychrobacter arcticus 273-4] Length = 299 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 15/275 (5%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR VF V GSF+ +A +L ++ S++S+QI LE +G+ L +R R L+LTE Sbjct: 3 DNLRGMAVFASVVGHGSFSGSARELGITTSAVSQQIRSLENTLGVVLLHRSTRKLSLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + +V E +I++ + + +G LRIATT +LG N + L ++ + D+ Sbjct: 63 GASFYEAAKDVVSAAEQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHDDL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I DN ID+ + D A+R+ I S+L L + A+P YL+ ++ + Sbjct: 123 SITYFADNNYIDMIDERIDIAVRMSPNINDSTLSNHPLSDVRQMLVASPQYLRQHKKIET 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVLG 238 ++L H LI M+D N + G + RI S + N+ M G Sbjct: 183 PKDLADHQLICI-----DIMKDANNVELTQTETGKKTRIKMTSRIHTNNVFMAMTIAKEG 237 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVY 270 GI + + VK ++ NLV ++ PSF +Y Sbjct: 238 HGILRMMEMDVKKELESGNLVEVLTGYQMPSFVLY 272 >gi|319782432|ref|YP_004141908.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168320|gb|ADV11858.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 299 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 6/279 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F VAR SFT AA +L +SQS++S + LE +G++L R R ++ TE G + Sbjct: 7 NELTAFLAVAREESFTRAAAKLGVSQSALSHTVRALEERLGVRLLTRTTRSVSPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R ++ET I L KP+G +RI+ +L + L YPDI+++ Sbjct: 67 LLRTVGPRLDEIETELIALSALREKPAGTIRISAGEHAADAVLWPAIAPLLPDYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+D DI + D +RL + + + R + M +P Y +P + Q+ Sbjct: 127 IIVDYGLTDIVAERFDAGVRLGEQVARDMIAVRIGPDMRMAVVGSPTYFATRPKPRTPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L HN I +P + W R + L N+ M + G G+A L Sbjct: 187 LTTHNCINL--RLPTYDGLYAWEFEKAGRELKVRVEGQLVFNTAALRMNAVLAGLGLAYL 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 P+ V N LVR++ D P + YP + T Sbjct: 245 PEEQVTAHLANGRLVRVLADWCGPFPGYHLYYPSRRQAT 283 >gi|319795206|ref|YP_004156846.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597669|gb|ADU38735.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 300 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GSF+ AA + + +Q ++++QI+ ET + ++L R+ RG++LTE G+ + Sbjct: 7 MEMFVRVVETGSFSKAAREFNTTQPTVTKQIAATETRLKVRLLNRNTRGVSLTEPGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E +Q + G LR+ T++ G+ ++ E++ +P +Q+ L Sbjct: 67 EKCKTIVRDAEEADSIVQLRQNQAQGLLRVGTSVAFGRRVVVPLALEYMRRHPQVQLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ D AIR+ K + SSL R L AAP YLK P Q+L Sbjct: 127 FEDRYVDLIAQGIDVAIRMGK-LADSSLGARYLGANPWVMVAAPGYLKKHGTPKRAQDLG 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + ++ E + P+ P + N+ +++ G GIAL+P Y Sbjct: 186 AHVALIYSSVVGD--EFWRMHTPKGEPVTVPVSGRFRSNNLSAVLAAARDGLGIALMPRY 243 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ +V ++ D P ++ +P GK+ F F+ Sbjct: 244 VASESMAAGKVVAVLGDHALPEQEIHAVFPSPKLVPGKVSGFVAFL 289 >gi|313202390|ref|YP_004041048.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gi|312441706|gb|ADQ85812.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 300 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 145/296 (48%), Gaps = 7/296 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF VA SFT AA+ L L + SIS ++ LE +G +L +R R + LT+ G + Sbjct: 5 DAMQVFVRVAELASFTRAADSLGLPKGSISNAVTQLEARLGARLLHRTTRKVQLTQDGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +++ + Q++ G+LR+ +++ NL+ L EF+ +P I+I+ Sbjct: 65 FYERCKDLLAEVDEVESLFQQTETLLRGRLRVDMPLNMAHNLVIPQLPEFMQRHPGIEIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D + DC +R+ + S L+ R L T+ M A+P Y++ P+++++ Sbjct: 125 LSSTDRRVDPISEGFDCVVRV-GVLTESGLVARHLGTLEMVNCASPAYIRQYGMPMALED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H ++ + ++ F ++ A V R P + + VN+ + C+ G GI + Sbjct: 184 LAAHYMVHYVSVLGAKPSAFEYMEAGVSRHCLVP--ARVTVNNSTAYSMACLAGLGIIQV 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P V+ L+ ++ + V YP + +L AF ++ K + Sbjct: 242 PLVAVRTYLQRGELLELLPEFKPEPMPVSLLYPHRRHLSRRLLAFMEWLTQKVHAY 297 >gi|313111122|ref|ZP_07796950.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310883452|gb|EFQ42046.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 309 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 107/197 (54%), Gaps = 1/197 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++ D + +++ VA + SFT AA L L+QS +SR I LE E+G++L +R R ++LT Sbjct: 8 IAMDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLT 67 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + + +LE + L + PSG L+I T LG+ ++ L+E YP Sbjct: 68 PDGQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +QI+ + ++ +D++ + D A+RL + + LI R L + A+P YL++ P Sbjct: 128 QLQIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTP 186 Query: 181 LSIQELDKHNLITFGDL 197 +++L HN T DL Sbjct: 187 ERLEQLAGHNCPTVRDL 203 >gi|167580021|ref|ZP_02372895.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 294 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ L +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R KP + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGKP-RDSRLSARQLGTFAQVVVGSPDYFARQGAPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A+ D + P+ + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPASGDADVEPPQ--SMICNNVETRVCFAIRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V++ + L +++ I Y +P + KL+AF +FI Sbjct: 242 FAVREELASGRLRTVLDAYIERPQAFYVLWPSGRHASPKLRAFVDFI 288 >gi|284008190|emb|CBA74457.1| LysR family transcriptional regulator [Arsenophonus nasoniae] Length = 312 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 141/276 (51%), Gaps = 11/276 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF A + SF+ AE+LHL++SS++++I+ LE +GI LF+R R +LTE+G+ Sbjct: 12 NSLPVFVAAAEANSFSQTAEKLHLTRSSVAKKIAQLEARLGITLFHRTTRTQSLTEEGTL 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++E + L ++ GK R++ + G + L + YP ++++ Sbjct: 72 YYEYCRRALDEIEKIEDILNSGKLETCGKFRLSMPVLFGHLCIAPLLISLIKQYPKLELE 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ ID+ + D +I + SS+L+ RK+ M A+P YL EP +I E Sbjct: 132 MSFNDRIIDLIEEGIDLSIYIGTLPDSSNLVARKIGKHRMTICASPSYLAQMGEPQTIIE 191 Query: 186 LDKHNLITF--GDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H + + + I K ++D N RP + L ++ +I + +GIA Sbjct: 192 LAQHFAVAYSHSNRIQKWRLKDDNGGIYEFRP-----KTRLMMDDMQAIKDAIISDAGIA 246 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 LPD++V+ + L IM +F++Y +P+ Sbjct: 247 WLPDWLVRKELIDGRLKEIMPRAGEITFSIYAVWPK 282 >gi|330897904|gb|EGH29323.1| LysR family transcriptional regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 302 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 140/306 (45%), Gaps = 13/306 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+FD + + +F V RSGSF AA QL + ++ISR++ LE ++ +L R R L LT Sbjct: 1 MAFDLNDVALFVQVVRSGSFAQAARQLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60 Query: 61 EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + G + + R V +E + +L +PSG +RIA D + FL Y Sbjct: 61 QAGEEFYDRCVGAVDGVMEAAE-QLASGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178 P +Q++ +L + D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GSPLQDSGYVGRQLIDEGHDTMVASPAYIAVHG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 P S+Q L H ++ G W L D + E I+ N+ ++ + + Sbjct: 179 MPDSLQSLHSHYCVSAGHRGGATA----WRLLGPDTKMHEVHIASRFNANTAQALRKATL 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GIALLP +++ + LV ++ S ++ YP + AF + K Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLPRYQRTSHGLHVLYPSRQHLPPAVSAFIALVLEK 294 Query: 294 ARDWKF 299 RD F Sbjct: 295 LRDKAF 300 >gi|326316212|ref|YP_004233884.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373048|gb|ADX45317.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 309 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 144/289 (49%), Gaps = 18/289 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R++ V +G+FT AA+ L L ++++++ + LE + ++L R R +T+T G+ + Sbjct: 7 MRIYARVVEAGTFTRAADSLQLPKATVTKHVQALEARLRVRLLNRTTRRVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + PSG+LR+ + + L+ +L+EF YPDIQ++L Sbjct: 67 DRAVRLLADFDDIEASMTHARATPSGRLRVDVGTSMARLLIIPHLEEFQSRYPDIQLELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSIQ 184 + ++ +D+ D DC IR + + SL+ R++ + A+P YL+ REPL + Sbjct: 127 VSDRIVDLLSDNVDCVIRGGE-LTDQSLVARRIGLLEFITVASPAYLERHGTPREPLDL- 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEP-RISCLQVNSYLSIMQYCVLGSG 240 E ++I F P+ + D IG P R++ + N+YL+ + + G G Sbjct: 185 ERGHQSVIYFS---PRTSRRYPLEFHRDGESLEIGGPSRLAVNESNAYLAAL---LAGRG 238 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + + D +LVR++ + P VY YP + K++AF Sbjct: 239 VGQITTMQAQRYVDRGDLVRVLPEWSHPLLPVYVVYPPNRHLSAKVRAF 287 >gi|157963506|ref|YP_001503540.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848506|gb|ABV89005.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 316 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 23/280 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA+ L+L +S++SR++ LE E+ +KLF+R +R +TLT GS Sbjct: 4 EDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELNVKLFHRQSRAMTLTASGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + LE T EL + +G LRI + + EF+ L+P++ ++ Sbjct: 64 FYDKSTAMLATLEQTLSELSGEESEVTGHLRILIFPVPELIHITHAIFEFMDLHPELTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+ + D+ + D A L + ++ R +++ +H +A+P YL P S E Sbjct: 124 IIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHVISEMVHFFASPEYLAKAGRPTSPDE 183 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237 L +HN I F G + FN + P G+ R L VNS + ++ ++ Sbjct: 184 LPQHNSILFRYPNGRI-------FNEV-----PFGKDRTLSVKGNLCVNSLATCLEATLM 231 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G GI+++P K+ + L + EDV + YP Sbjct: 232 GRGISMMPLPFAKEHIASGELEMLFEDVEPYEGKCFLVYP 271 >gi|172059197|ref|YP_001806849.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171991714|gb|ACB62633.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 296 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + + F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G Sbjct: 5 NLNGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + S+ +P G+LR++ + +G L L EF YPD++ Sbjct: 65 RHFYERCQRILEDFRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L +++ +D+ D IR P+ SSL+ R+L A P YL P + Sbjct: 124 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPRAP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240 +L+ H+ + + P + +W LA+ D G P + + N+ ++ + G G Sbjct: 183 HDLEAHDCVRY--CFPTTGKLQDWALASRD---GTPLKLRTAMTCNNMEALRGAVMAGLG 237 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +PD++ +D + LV +++D +P + + + KL+ F +F+ Sbjct: 238 IGYMPDFLARDALDTVALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 290 >gi|26989225|ref|NP_744650.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24984068|gb|AAN68114.1|AE016443_5 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 308 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 136/299 (45%), Gaps = 16/299 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR IS LE +G +LF R R + LTE G + Sbjct: 13 IELFCLAAELGSFTAAALAAGVTPAAVSRSISRLEERLGSRLFVRTTRSIRLTEGGRGYY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + + +PSG LRI+ G + + L EF YP +Q+ + Sbjct: 73 EQCRQALTQLVEAERVVTGQQQEPSGTLRISLPTTYGHHRILPLLPEFRRRYPKVQVDIH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + D AIR+R S+LI R L + A P YL++ P S++EL Sbjct: 133 LGNRNIDFVGEGYDLAIRVRAQ-PDSTLIARPLEDARLVVVATPDYLEHAGAPQSLEELA 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241 +H+ I F +P WL + G R L Y L + G+G+ Sbjct: 192 QHDCIQFE--LPSSGRRIAWLFDEE---GRER-EVLTEGGYVCSDDVLGGVTLAKHGAGL 245 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +IV+ +LV ++ S YP+ +L+AF +FI K R W Sbjct: 246 FQTYRFIVERELAEGSLVEVLRPFAGRSRPFTLLYPQGRHMPLRLRAFVDFIMDKRRHW 304 >gi|197284690|ref|YP_002150562.1| LysR family transcriptional regulator [Proteus mirabilis HI4320] gi|227357685|ref|ZP_03842034.1| LysR-family transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194682177|emb|CAR41827.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320] gi|227162014|gb|EEI47028.1| LysR-family transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 298 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 18/273 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++++VF V SGSFT AAE+L L+ S++SR + LE+++G+ L R R L+LT Sbjct: 1 MKATSEEVQVFIAVVESGSFTRAAEKLALANSAVSRTVKKLESKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++ + EL + P G LRI + +LL +K+F YP Sbjct: 61 EEGEHYFHRMQVILQDMKLAEDELINTQKTPQGLLRIDAATPVVLHLLVPFIKQFQQKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + L+ I++ D AIR+ + SSL + L+ + A P YL +P Sbjct: 121 QITLSLVSSETFINLIERKVDIAIRVGN-LTDSSLRAKPLLNSYRKIVATPDYLARYGQP 179 Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L H +TF + + P E+ L + P+G + NS +I Q C Sbjct: 180 KIAEDLLDHTCLTFTEPVSLNTWPIERENGQLL---EAPMG------ISSNSGETIRQLC 230 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265 + G+GIA L D++V +N + + D + P Sbjct: 231 LEGNGIACLSDFMVVNDIENGRFIELFPDKLRP 263 >gi|170728635|ref|YP_001762661.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813982|gb|ACA88566.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 314 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 33/285 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA+ L+L +S++SR++ LE ++ IKLF+R +R +TLT GS Sbjct: 4 EDIALFHRIVETGSLVEAADLLNLPKSTVSRRLQILEDDLNIKLFHRQSRSMTLTASGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120 + T + LE T +EL ++ + G LRI +D+ + +F+ P Sbjct: 64 FYDKTLSILGDLEQTLVELTDTEAEIDGHLRILIFPVPELLDIANGIF-----DFMDHNP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++LI+ + D+ + D A + + ++ R+++T +H A+P YL P Sbjct: 119 ELTVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREMITEELHFVASPDYLAKAGTP 178 Query: 181 LSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC- 235 + ++L KHN I F G + FN + P G ++ N L+ +Q C Sbjct: 179 VLPEDLAKHNSILFRYPNGRI-------FNEV-----PFGNDMKIAVKGNLCLNSIQLCL 226 Query: 236 ---VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 + G GIA LP + +D+ L + EDV Y YP Sbjct: 227 EASLTGRGIAFLPIELTRDHVERGELTMLFEDVEPYVGKCYLVYP 271 >gi|330810671|ref|YP_004355133.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378779|gb|AEA70129.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 304 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 6/244 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SF AA L S SS++R I GLE G+KLF R A +TLTE G +L Sbjct: 9 LEAFATVARKRSFVVAARSLGRSPSSLTRAIQGLEERSGVKLFNRSANAVTLTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L S +G +R + ++ G + ++ YPD+ + +I Sbjct: 69 PHAYRMLDLQREADEDLAGLSGLATGWIRFSAPQSFAHTVIPGLIAQYSQRYPDVSVDVI 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D D +IR P QSS LI L + + YA+P YL+ C P SI+ L+ Sbjct: 129 FTDAAVDPVKGKLDFSIRGAFP-QSSDLIGYPLWSYSRYLYASPGYLERCGLPASIEALE 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H LI P+ ++++N+ G R+ + +S ++ Q + G+GIA L D Sbjct: 188 QHALIL--HTAPRILKEWNFRGPGQ--AGSFRVHPKFRFSSGAAVFQAALAGAGIARLAD 243 Query: 247 YIVK 250 ++ + Sbjct: 244 WLAE 247 >gi|90411129|ref|ZP_01219142.1| transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90327975|gb|EAS44296.1| transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 305 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 27/308 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V GSF+ A E+L +++S++S++IS LE ++GI+L R R L+LTE G Sbjct: 4 FSAIPVFVAVVECGSFSLAGEKLGVTKSAVSKRISQLEAKLGIQLLQRTTRRLSLTEAGE 63 Query: 65 K---LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 + R + ++ E LQE +P G LR+ + G+ + + +FL P Sbjct: 64 QYFDYARNALTIANEGEDAISMLQE---QPQGTLRLNVPMVFGRLHIAPMIPKFLQDNPK 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I++++++D+K +D+ D AIR+ K + SSLI +++ H A+P YLK P Sbjct: 121 IKVEMMMDDKVVDLISGSFDIAIRIGK-LPDSSLIAKRIAPCHSVLCASPDYLKKHGTPS 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----VNSYLSIMQYCV 236 + +L HN +++ FN E +IS + VN+ ++ + + Sbjct: 180 TPLDLAHHNCLSYSYFQAGSEWRFNG--------PEGQISVVPKGNYCVNNSDALFEGLL 231 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF----RNF 289 G G+ +P +IV + NL+ ++ + P +Y PE K+ F +N+ Sbjct: 232 TGLGVCQMPTFIVASAIEQGNLISLIPEYELPKHAIYAMLPERKHIPAKISIFLAYLKNY 291 Query: 290 IFLKARDW 297 I K+ W Sbjct: 292 IDEKSASW 299 >gi|27375622|ref|NP_767151.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27348759|dbj|BAC45776.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 303 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 12/292 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F SGS + AA L S +++SRQIS LE G +L R R L LT+ G L+ Sbjct: 11 TFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLALTDDGRMLYER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +++ + L S +PSG+LR++ +G+ L+ L +FL P + + L+L Sbjct: 71 AKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHACPSLSVDLLLV 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++++++ + A+R+ + I S L+ RKL + M A+P YL EP S +L +H Sbjct: 131 DRNVNLIEEDVHLALRVGR-IPDSQLVTRKLAEVQMIHCASPGYLARRGEPQSPSDLPRH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246 + + F D F A G RI L VNS ++ G+GI +P Sbjct: 190 DCLVFSDAPGAATWRFGRDAK-----GGSRIRIAGRLWVNSLDALASAAENGAGIVRVPS 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V+ L R++ + ++ Y + + K++AF +F+ + R Sbjct: 245 WQVERQLAEGRLRRLLREHEPAPAPLHALYQPSRLGSAKIRAFIDFLVERWR 296 >gi|317403588|gb|EFV84079.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 300 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 6/289 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GS T AA + +S + ++ I GLET +G++L R R +LTE G + Sbjct: 1 MEIFVAVVELGSLTAAAARHEMSAAMAAKHIKGLETRLGLRLMNRTTRRQSLTEAGQAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + V P G LRI +T+ G L + ++L LYPD+ ++L Sbjct: 61 SRCKAILADIREAEQGAEALRVAPRGNLRITSTVSFGSFALAPAIADYLNLYPDVSVELA 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D A+R+ +P + S L+ R + T M AAP YL P + +L Sbjct: 121 LSDAVEDLVASRYDLAVRIGEP-RDSGLVARPIGTYQMIICAAPAYLARHGTPEAPADLA 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + F + D P S N+ ++ Q + G GI L P+ Sbjct: 180 RHQCLDFSYWSRRTGWRLGGPEGADADF--PPTSRFIANNGQALRQAALAGFGIVLQPEL 237 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++ ++ LV I++ + V YP+ + KL F F+ + Sbjct: 238 LLAEDVRAGRLVPILQSYWPAARPVTLLYPKDRQALPKLTTFVEFVVAR 286 >gi|317054023|ref|YP_004118048.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316952018|gb|ADU71492.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 291 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR++ V ++G+FT AAEQL LS+ +SR+I+ LE +G +L R+ R L++T+ G Sbjct: 4 DDLRIYVAVIKAGNFTSAAEQLMLSKQYVSRRIAALEESLGARLLNRNTRKLSVTDNGQL 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R + ++ ++ + G R++ + G + L + EFL L+P +Q Q Sbjct: 64 FARHAQRILDDVQEAELAVSGRRQVLQGSFRLSVPMSFGISHLSPYIAEFLSLHPALQFQ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D AIR+ + S+LI +KL A+P YL+ P ++ Sbjct: 124 VELADRYVDMIGEGFDMAIRI-GTLPDSTLIAKKLGEFRRVICASPRYLQGADAPRKPED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + +G E F + P +S N+ + + G G+ LLP Sbjct: 183 LLDHACLRYGRESQTGWELFRGEQREVINVQGPMVS----NNGEMLRDAAMAGLGLILLP 238 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++IV + +LV +++D S ++ YP+ + + + F F+ Sbjct: 239 EFIVAPALASGDLVTVLDDWHPSSLSLNALYPQHRQRSEVNRVFMAFL 286 >gi|257454968|ref|ZP_05620216.1| transcriptional regulator, LysR family [Enhydrobacter aerosaccus SK60] gi|257447678|gb|EEV22673.1| transcriptional regulator, LysR family [Enhydrobacter aerosaccus SK60] Length = 299 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 15/279 (5%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR VF V R GSF+ AA++L ++ S++S+QI LE ++G+ L +R R L+LTE Sbjct: 3 DNLRGMAVFASVVRHGSFSGAAKELGITTSAVSQQIRSLENDMGVVLLHRSTRKLSLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + +V E +I + + + +G LRIATT +LG N + L ++ + D+ Sbjct: 63 GTSFYESAKDVVAAAEQGRIRVNQLRDELAGNLRIATTPELGVNHILPALSTWISAHDDL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I DN+ +D+ + D A+R+ + SSL L I A+PH+L+ + Sbjct: 123 TIHFEADNQYVDLIEERIDIALRMSPNLNDSSLSAFPLTEIRQLLVASPHFLRQNEKLTE 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVLG 238 ++L K N+I ++D N + ++ G + R+ + +Q N+ + G Sbjct: 183 PKDLAKLNMIGIS-----LIKDPNQVDMINVETGKKSRVRMPTRIQTNNIMLATTLAKEG 237 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G+A + ++ N +LV ++ PS+ +Y P Sbjct: 238 HGVARIMSLDIQKELANGDLVEVLPGYQLPSYMLYAVTP 276 >gi|93006764|ref|YP_581201.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394442|gb|ABE75717.1| transcriptional regulator, LysR family [Psychrobacter cryohalolentis K5] Length = 288 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 129/256 (50%), Gaps = 10/256 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA SFT AA +L +S + +SRQ++ LE + KL YR R ++LTE+G Sbjct: 3 WDGISEFVYVAEFESFTKAASKLAISTAQVSRQVTALEKRLNTKLLYRTTRKVSLTEEGR 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + KP G++ + + G+ L + +F++ Y DI++ Sbjct: 63 VFYQHCRSILDGLDAAEQAVSNLQSKPQGRINLTAPVTYGEQQLLPLINDFMVQYSDIEV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ ID+ D AIR+ K + S+++ KL A+P Y + P ++ Sbjct: 123 TAFLSNQKIDLIEGGYDLAIRIGK-LSDSTMMANKLSHRTNFVCASPAYFEKYGRPKTLD 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL +H+ + G L ++ A +R I R+S ++ NS S++ + G GI Sbjct: 182 ELSQHSCL-LGTLDYWHFKE----ADTERNI---RVSGKIRYNSGYSLVDAALKGLGIVQ 233 Query: 244 LPDYIVKDNPNLVRIM 259 LPDY V+ + R+M Sbjct: 234 LPDYYVQKHLATGRLM 249 >gi|239817288|ref|YP_002946198.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239803865|gb|ACS20932.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 301 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VA GSF+ AA +L +S++S S+ ++ LE ++L R R +TLT+ G L Sbjct: 7 LKTFLEVANVGSFSRAAGKLGISKASASKHVATLEARFNVRLMNRSTRSVTLTDAGRLLQ 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + +E+TQ ELQ +PSG+LR+A L Q L EFL LYPD+ I L Sbjct: 67 LRSAPLMEMVESTQSELQAHGSRPSGRLRVAGLHGLVQTDFPSLLSEFLTLYPDVHIDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+ +D+ + D A+R + I +LI R+L + + A P Y P ++ Sbjct: 127 IGNRVVDLVEEGVDIALRFGR-IGDENLIVRRLQRVELTLCATPSYWARRGIPQMPDDMR 185 Query: 188 KHNLITF 194 H+++T+ Sbjct: 186 WHDVLTY 192 >gi|206575369|ref|YP_002235608.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206570574|gb|ACI12203.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 295 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA +GSF AAE L L S+++ I LE + ++L R R ++LT +G + Sbjct: 7 MQVFIRVAEAGSFVRAAETLSLPSSTVTSTIKNLEKYLQVRLLNRTTRRVSLTPEGLQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E T+ L + + +P G+LR+ + ++ NLKEF YPDI + + Sbjct: 67 AQCREILALVEHTEASLADLNRRPRGRLRVDMPGGIAHFIVMPNLKEFYSRYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR + I +S+L+ R L A+P YL+ P S ++L Sbjct: 127 VSDRQVDLVQEGVDCVIRTGELI-NSTLVARPLGEFRWITCASPDYLREYGIPQSPEDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I + + ++ ++ + + VN ++ C+ G G+A L + Sbjct: 186 HHRAIHYFSGQSRRTDELRFVKGTET-LSVSVSGQAAVNETGLYIKMCLEGFGLAQLAEN 244 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V ++ LV ++ D PS V YP + ++AF ++I Sbjct: 245 VVAEHLEKGTLVEVLADWQPPSVPVTLLYPHQRFLSPAVRAFADWI 290 >gi|167838388|ref|ZP_02465247.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 296 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 135/285 (47%), Gaps = 9/285 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A +L +S S++ + I+ LE +G++LF+R R +TLT++G H Sbjct: 9 AFVRTAETLSFVAAGRKLGVSASAVGKTIAKLERTLGVRLFHRTTRKVTLTDEGRHFHER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +L Q + +S+ P G+LR++ + +G L L EF YPD+++ L + Sbjct: 69 CHRALEELRDAQASVSQSAQTPRGRLRVSLPV-IGYRFLLPVLPEFKRRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR + SSL+ R+L A+P YL P +++ELD H Sbjct: 128 DRLVDVVEGGFDAVIR-SGALSDSSLMSRRLGPFSFLLCASPAYLAQAGAPRTLRELDAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + ++ + L P P + + + N+ ++ + G GI +PD++ Sbjct: 187 ACVRYRFPTTGKLQPWGLLPDGSEP---PNLHTAMTCNNMEALRAAVMSGFGIGYMPDFL 243 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D + L +++ +P + + K++ F +F+ Sbjct: 244 ARDALADGALATVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFV 288 >gi|187479222|ref|YP_787247.1| LysR family transcriptional regulator [Bordetella avium 197N] gi|115423809|emb|CAJ50360.1| LysR-family transcriptional regulator [Bordetella avium 197N] Length = 301 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/271 (28%), Positives = 133/271 (49%), Gaps = 9/271 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF AAE+ L++S ++RQI+ LE + G++L R R L LT+ G + Sbjct: 1 MQTFARVVELGSFAAAAERAGLARSVVTRQIAYLEEKYGVRLLNRTTRKLNLTDAGRAFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + L+ S +P+G+LRI+ + G L + ++L YPD+ I L Sbjct: 61 ERIRPLLSELADIDLALRAQSSQPTGRLRISAPVSFGVLHLGPAVADYLQRYPDVVIDLD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ D D A+R+ P+ SSL+ R L + AAP YL P + L Sbjct: 121 LNDRVVDLVQDGYDVAVRI-GPLTDSSLVARPLAPQTLQVCAAPSYLARHGTPAQPEALR 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + +W+ D RI+ ++ N+ + + G GI L PD Sbjct: 180 QHQCLHYS----YASGGTDWVFEKDGQTTLVRITPSMRANNGDVLRTAALAGHGIILQPD 235 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 +++ D+ LV ++ D P T+ YP Sbjct: 236 FLIGDDLRAGRLVPVLPDYRRPVITMMMVYP 266 >gi|49083524|gb|AAT51054.1| PA3135 [synthetic construct] Length = 307 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 141/289 (48%), Gaps = 12/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +F V SFT AA+ L + +S++SR+I+ LE +G++L R R L LTE G Sbjct: 4 DDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ H + + + PSG LRI + I+ GQ L L +F+ YP I + Sbjct: 64 YYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQITAE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D + D I + +P + S+L+ R+L++ A+P YL P S+ E Sbjct: 124 VELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTSVAE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + L+ + + W + D + +SC N+ + V G+GIA LP Sbjct: 183 LAGHRAV----LLSTDSQRY-WPLSGDSLPCQRVLSC---NNITFAREAVVAGAGIAALP 234 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I + + LVR++ DV P +Y YP K+KAF +F+ Sbjct: 235 ALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283 >gi|85704667|ref|ZP_01035769.1| hypothetical protein ROS217_06294 [Roseovarius sp. 217] gi|85671075|gb|EAQ25934.1| hypothetical protein ROS217_06294 [Roseovarius sp. 217] Length = 302 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AAE L + +++++ I LE + KL R R + +T G+ + Sbjct: 7 MRAFVRVVETGNFTRAAESLRMPKATLTNLIQRLEKHLQTKLLNRTTRLVIVTTDGAFYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +++ L +PSG+LR+ + + +L +F YPDIQ+ + Sbjct: 67 ERAVQLVSEIDELDNSLTHRQTRPSGRLRVEMSGAFADWYVIPSLADFYQSYPDIQLDIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R +P + SLI R++ I + AAP YL+N P + +L+ Sbjct: 127 VTDRTVDYVRENVDCALRAGEP-KDQSLIARRVSEIGLITCAAPSYLENHGTPSTPAQLE 185 Query: 188 KHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L G L P + +++ + RI+ V SYL + + G GI Sbjct: 186 TDHLCVNYFIAQTGSLKPFVFAQDDSEISIN---SKHRIAVNDVRSYL---RATISGQGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LPD++ +D LV ++ D + VY YP + K++ F +++ Sbjct: 240 GQLPDFMAEDEIAKGALVPVLSDWKAKTVPVYVVYPPNRHLSNKVRVFVDWLI 292 >gi|78062199|ref|YP_372107.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77970084|gb|ABB11463.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 320 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +G+FT AA L L+ +++S I LE E+ +KLF R RG++LTE G + Sbjct: 26 LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 85 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 R T Y ++ + EL+++ +P+G LR+ T + L + L+ L F YP +++++ Sbjct: 86 RQTEPAYRQVMQARDELKDARSEPNGLLRV-TALPLARTLVIAPVLATFRERYPKVRLEI 144 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +N+ +DI+ D D IRL +Q + R + A+P YL P SI +L Sbjct: 145 RYENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARYDAPASIADL 204 Query: 187 DKHNLITF 194 ++H I F Sbjct: 205 ERHACIRF 212 >gi|162454395|ref|YP_001616762.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161164977|emb|CAN96282.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 305 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 130/253 (51%), Gaps = 10/253 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A GSFT AA +L ++ S++SR+I+ LE EVG++LF+R R +TL+++G Sbjct: 10 FVEAAELGSFTLAARRLRVTPSAVSRRITQLEGEVGVRLFHRTTRAVTLSDEGRAFFERA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +L+ Q +P+G LR+ +G++++ L F YPD+ ++L L + Sbjct: 70 RAALRELDDAQRATSGLRDRPAGLLRVEAPTVIGRHVIVPVLARFAERYPDVDVELALRD 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 D++ + D A+RL + S LI R + M AP YL+ P ++ +L++H Sbjct: 130 DPADLASERIDVAVRL-GTLPDSGLIARPVGRSRMLVCGAPGYLREHGRPRTVDDLERHV 188 Query: 191 LITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + G L+P + D + R I R + V+ ++++ + G+G+A L D+ Sbjct: 189 RLGYALHGRLLPWRLRDGVKV----REIAPTR--RIVVDDGEALIELAIEGAGLAWLCDF 242 Query: 248 IVKDNPNLVRIME 260 ++ +++E Sbjct: 243 MLARAGKARKLVE 255 >gi|261253365|ref|ZP_05945938.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] gi|260936756|gb|EEX92745.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] Length = 303 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 144/284 (50%), Gaps = 20/284 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + VF V GSFTHAAE L +++S++SR+++ LE +G++L R R L LT + Sbjct: 1 MDLNGVNVFVQVVDCGSFTHAAESLRMTKSTVSRKLAELEQHLGVRLITRSTRSLVLTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G K ++ ++ + ++E+ + G L I ++LG +L + +FL+ YP++ Sbjct: 61 GEKFYQSGLQMLEVMNQAELEVSANQDLVRGPLNIVLPVELGHQVLGSYINQFLMQYPNV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L N+++DI + D ++ K ++ S+L+ R L A+P YL+ + Sbjct: 121 TMNLELSNREVDIVGEGIDLYAQIGK-LEDSNLVSRYLTASKRALVASPDYLEEY--GMI 177 Query: 183 IQELD---KHNLITFGD---LIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 LD H ++ + +PK D + +D P L+VN+ + ++ Sbjct: 178 EHHLDLIAPHQMVEVSNKAVRLPKWHLQLDDDSSYQIDLPYR------LRVNTITACLKA 231 Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + G GIA+LP++I +++ LVR++ + P V Y + Sbjct: 232 SLDGLGIAVLPEFICREHFATGRLVRLLPEYRMPEVEVSLVYAD 275 >gi|33600975|ref|NP_888535.1| LysR family regulatory protein [Bordetella bronchiseptica RB50] gi|33575410|emb|CAE32487.1| LysR family regulatory protein [Bordetella bronchiseptica RB50] Length = 302 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 13/290 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D+ RVF VA GSF AA L L ++S+S + LE +VG +L +R R + LT G+ Sbjct: 4 FDQYRVFAQVAEMGSFIKAAHALELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTADGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++E Q S + +G+L I + + L+ L L +P +Q+ Sbjct: 64 QLLERIRPLLAEVEDIDQLFQASQRQAAGRLNIDVPSRIARRLVAPALPALLRRHPRLQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ + DCA+R+ + SSSL+ R L ++ + A+P YL+ P Sbjct: 124 ALGSGDRAIDLVREGVDCAVRI-GVLHSSSLVVRPLGSLALINCASPAYLREHGAPGHPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 EL + T G P+ W AT P G + S + VN+ S + C+ G Sbjct: 183 ELAAGHW-TVGYASPQTGRALPWEYAT---PRGGTSLVEAASRVVVNNAESYIACCLAGL 238 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ +P Y V+ D LV +M D S V YP + + +L F Sbjct: 239 GLIQIPRYDVQHLLDGGQLVEVMPDQRAASMPVALLYPHRRQRSRRLAVF 288 >gi|209886612|ref|YP_002290469.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] gi|209874808|gb|ACI94604.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] Length = 298 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 135/264 (51%), Gaps = 16/264 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD RV VAR+G+ AA +L + QS++SR+++ +E G +F R+ +GL+LT G+ Sbjct: 13 WDHFRVVLEVARTGTLVAAARRLGVDQSTVSRRLAQVEFSTGGTIFKRNRQGLSLTPLGN 72 Query: 65 KL-HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++ RV K+E + +E+Q + K SG++ IA+ +G L+ +LK + YP Sbjct: 73 EIFSRV-----EKMEASLLEIQGITSKGTIASGRVTIASMEGIGSLLIARSLKALSVAYP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ L+ + +DIS AD + +P + SL+ +K+ + H YA+ Y+ R Sbjct: 128 EIEVHLVTTSNHVDISKREADIFVSFFEP-ATGSLVTQKIADVCFHLYASDEYI-GGRTI 185 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L I + D P + WL + I P+I + S S M G G Sbjct: 186 MLPTDLQGETFIGYID-DPIFLPSARWL---EEFIENPKIG-FRATSMFSQMNAAQEGLG 240 Query: 241 IALLPDYIVKDNPNLVRIMEDVIT 264 I +LP+Y + L +I+ D T Sbjct: 241 IVMLPNYAQAELSGLRKIVPDRFT 264 >gi|190574827|ref|YP_001972672.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012749|emb|CAQ46378.1| putative transcriptional regulator-LysR family [Stenotrophomonas maltophilia K279a] Length = 301 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 16/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F + G AAE L +S + +S+Q+ LE +G+ L R R ++LTE G Sbjct: 4 FNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLEAHLGVVLLQRTTRRMSLTETGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + +L+ + + E +G+LR+ + L L FL +P + + Sbjct: 64 AYYRECCRLLDELDALERGIAEQRGDVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQLSL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+++++ +D + D ++RLR + S L+ R+L ++ AAP YL+ P ++ Sbjct: 124 DLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLRQHPAPQAVD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241 +L H+++ + + D + P G+ I+ + VN+ L + V G GI Sbjct: 184 DLQAHSVLAY------SLSDSPGSWPLLGPDGQVTITLPARVTVNNSLLLRDLLVAGMGI 237 Query: 242 ALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ P L R ++ D P V+ YP + K++AF +F+ Sbjct: 238 GALPSFLAA--PALARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFL 289 >gi|163749091|ref|ZP_02156341.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] gi|161331161|gb|EDQ02050.1| transcriptional regulator, LysR family protein [Shewanella benthica KT99] Length = 303 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 145/294 (49%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + + +S+ISR+++ LE ++G++L R R L+LT+ G Sbjct: 3 DLNGMMLFAAVVRAKGFSQAARETGIPKSTISRKVARLEEQLGVRLLQRDTRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + ++E + ++ ++ SG LRIA + Q L+ F+ LYP+++ Sbjct: 63 ALFYQHCISIRDEIEAAKATIENTNNHVSGSLRIAIPVSFSQELIANLCSSFMRLYPNVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + ++ + + D AI+ P+QSS L+ R L A+P YLK P + Sbjct: 123 LDVQFTDSEVSLVGEGYDIAIKY-GPLQSSDLVARLLFERKPILVASPGYLKANGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL H+ I G + P + + + R + +VNS + + + Sbjct: 182 QELANHHGILLGTSRSAPIWPLGKGNRKTMVSFKRKV--------RVNSAVMVKKLVQDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + + K+ + +LV I+++ +F +Y Y + + F +F Sbjct: 234 FGIAMLSNSVCKNELASGSLVPILQEWPIEAFKIYGVYSSRRQLATNISVFLDF 287 >gi|83719370|ref|YP_440683.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|167579354|ref|ZP_02372228.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] gi|167617454|ref|ZP_02386085.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257140670|ref|ZP_05588932.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83653195|gb|ABC37258.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 351 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGTPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|87120162|ref|ZP_01076058.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86164864|gb|EAQ66133.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 299 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 10/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V GS + A++ ++ SSISRQI LE E+ ++L R R + LTE G K Sbjct: 6 RLHYFNAVVELGSISAASQLYNVQPSSISRQIIALEKELSVRLLSRTTRNIGLTEAGRKY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + +L+ + + + P G LR+ T+ G++++ + FL YP I+++L Sbjct: 66 YEYSQRIVAELDEAKRVVNDLQESPKGLLRLNLTVGFGESVVLPLIPLFLEQYPAIKVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L K +D+ D D AIR K ++ SSLI KL+ + A+PHYL E +S +L Sbjct: 126 DLTEKVVDLVEDNIDIAIRSGK-LEDSSLIATKLMDNNFIPCASPHYLSKHPEIVSPDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 KH I +G + + LA + + + + VNS Q + +GIAL+P Sbjct: 185 IKHQCIHYGY---SGWQSWYLLANKKQSLNLEK--TISVNSVNGQKQLILNHAGIALIPQ 239 Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + VK +++ + P +T F E L +T + R FI K R Sbjct: 240 WAVKSELEEKSLLQ--LLPQYT--FSPNEHLTSTYGIYLNRQFIAPKIR 284 >gi|260778146|ref|ZP_05887039.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606159|gb|EEX32444.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 301 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 105/187 (56%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LTE G + Sbjct: 10 IRSFVLIAQLGNFTKAAEALDVSRSHVSRQISSLENQMGVTLLIRTTRTLKLTEAGKAFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + + H ++ + + K G+++I LG++L+ EF+ ++PD+ I L Sbjct: 70 QQCEKALHNIDQALLAAVDDVEKVQGEIKINCVGGYLGEDLIAQIATEFMHVHPDVSINL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K ++ S + RKL+ I M A+P YLK +P +EL Sbjct: 130 DFSSHRVDLIEDDFDIAFRMGK-LEDSGFVARKLLDIKMGTLASPSYLKRYGQPNHPKEL 188 Query: 187 DKHNLIT 193 +H+ +T Sbjct: 189 TQHHCLT 195 >gi|213969939|ref|ZP_03398072.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|301382212|ref|ZP_07230630.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302061331|ref|ZP_07252872.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] gi|213925264|gb|EEB58826.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 301 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 135/300 (45%), Gaps = 17/300 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ + Sbjct: 7 MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + EV + ++ +++ +P+G LRI + G LL L F +PD+++ L+ Sbjct: 67 QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D AIRL QSS LI R L + A P YL P ++L Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAEPDYLARHSAPTRPEDLR 186 Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 HN + F P E W T P GE + + N+ + Q G G Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + +LPD +V+ + LV ++ D P + Y +++ +L R+F+ W Sbjct: 243 VVMLPDALVQRDLQEGRLVALLPDYRLPRRPMNLLY---VQDRYRLPKLRSFVEFATAQW 299 >gi|296160862|ref|ZP_06843675.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295888954|gb|EFG68759.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 312 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 148/289 (51%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF AAE++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+V +LE + + +SV P G+LR+++ G + + + ++ YP + + + Sbjct: 67 ERLSQVLAELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R++ T H+ A+P YLK P ++ +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 +HN + + + + A+ R++ + ++L + VL G+GIA+L Sbjct: 187 ARHNYLQYAGVSALEIAPATGDAS-----SRVRLTGNLIVNHLEAQRVIVLQGAGIAMLG 241 Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ++ D+ LV ++ D + P ++ Y + K+++F +F+ Sbjct: 242 TEVIGDDLAAGRLVPLLVDDVPPRELPIHVVYASRRHLSAKVRSFVDFL 290 >gi|87120784|ref|ZP_01076677.1| Transcriptional Regulator, LysR family protein [Marinomonas sp. MED121] gi|86164012|gb|EAQ65284.1| Transcriptional Regulator, LysR family protein [Marinomonas sp. MED121] Length = 298 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 4/237 (1%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA SFT AA+ L+L ++++S I LE + ++L R R ++LT +G Sbjct: 9 VFATVAEQLSFTKAADILNLPRATVSTSIQSLEARLRVQLLNRTTRRVSLTLEGQVFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V +++ + Q+S+ K G+++I ++ + ++ L EF +P+I+I L Sbjct: 69 CQTVLTEIDDLEKSFQQSTGKLDGRIKIDMPVNFAREIVLPRLFEFNNKFPEIEIDLSSH 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID+ + D IR R S+ + RKL+ + + YA+P YLK P ++ +L H Sbjct: 129 DTFIDVVGESVDLVIR-RGDYSDSNFVVRKLMNVSIGNYASPAYLKERGVPKNLDDLKHH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 +L+T+ + +FN+L DR + + + + + VNS +S C+ G GIA LP Sbjct: 188 SLVTYSPSLGNKTGNFNYL--YDREVKKVSMRTSINVNSTVSYTDACLGGLGIAQLP 242 >gi|186470638|ref|YP_001861956.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196947|gb|ACC74910.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 324 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAEQL + +++++ I LE +G++L R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAEQLGMPRATVTTTIQNLEAVLGVRLMNRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + T Q + KPSG LR+ LG++L+ L+ F YPDI + L Sbjct: 67 EHCIRIITDIAETDASFQAGNRKPSGALRVHMPNSLGRHLVIPALQSFHQRYPDIALDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR ++ SS++ R++ T+ A+P YL EP SI +L Sbjct: 127 LSDRPVDPVEEGIDCMIRAGA-LEDSSMVARRIGTLKRVTCASPDYLVRFGEPQSIDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F + W+ VD +PI + VN + ++ C + G L+ Sbjct: 186 MHHAVNF--RVAHGTRPMPWIILVDGKPIEVRMNGVVTVNDSEAYVK-CGM-EGFGLIQP 241 Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 + P L + P+F + YP + K++ F +++ Sbjct: 242 MLFMVAPQLRDGSLKEVLPAFKPKPKPISIVYPNNRHLSAKVRVFADWV 290 >gi|110636229|ref|YP_676437.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110287213|gb|ABG65272.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1] Length = 295 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/276 (29%), Positives = 128/276 (46%), Gaps = 11/276 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + L F VAR SFT AA +L +S S++S+ + LE +GI+L R R + TE G Sbjct: 3 NLNDLAAFGAVARERSFTRAAAKLRVSPSALSQTVKNLEERLGIRLLTRTTRSVAPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R + + +++ L E KP+G +RI +LLQ LK FL YPDIQ Sbjct: 63 ERLLRTITPRFEEIDAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPEYPDIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I+D DI + D +R+ + + + + M A+P Y P + Sbjct: 123 VEIIIDYGLTDIVAEGFDAGVRMGEQVAKDMIAVPIGPDMRMAVVASPAYFDQHPIPKTP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q++ H I +P F+W L R + L NS + + G G+A Sbjct: 183 QDMTVHKCIN--TRLPTYGGVFSWGLEKKGREVKVRGEGQLIFNSLAMRLSSALDGLGVA 240 Query: 243 LLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273 +P+ YI + L+R++ED P F Y Y Sbjct: 241 YMPEDQALPYIA--DGRLIRVLED-WCPGFPGYHLY 273 >gi|167583711|ref|ZP_02376099.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 307 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 83/310 (26%), Positives = 152/310 (49%), Gaps = 43/310 (13%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + D LRVF VV R SF+ AAEQL +S + +S++++ LE ++G +L +R R + +TE Sbjct: 4 SPNLDDLRVFSVVVRLTSFSAAAEQLGVSPAYVSKRVAQLEAQLGTRLLHRSTRRVAVTE 63 Query: 62 QGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G ++ ++ +V H +E ++ + P G LRI+++ G++++ L F Sbjct: 64 AGERVLARAEKILDDVDHLVE----DVSTTRTVPRGTLRISSSFGFGRHVVAPALLAFTE 119 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP + ++L L ++ +D++ + D IR+ I + LI R+L + H A+P YL Sbjct: 120 RYPQLNVRLDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIARRLASNHRVLCASPAYLARR 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI 231 P ++ +L H + + D P+G R++ ++V LS Sbjct: 179 GTPRTLADLSSHECLAIKER--------------DHPLGVWRMNVRGETQTVKVGGALST 224 Query: 232 ------MQYCVLGSGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNT 280 +Q+ + G GI L I + P L R++ D P+ V+ YPE + + Sbjct: 225 NHGEVAVQWALAGRGIVL--RSIWEAGPLIARGALCRVLPDATQPA-NVWAVYPERVATS 281 Query: 281 GKLKAFRNFI 290 K++ +F+ Sbjct: 282 AKVRVCVDFL 291 >gi|186471394|ref|YP_001862712.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197703|gb|ACC75666.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 338 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 132/285 (46%), Gaps = 9/285 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA GSF A ++L + +SS+SR + LE ++ +LF R R +LT +G Sbjct: 31 FIAVANEGSFARAGDRLGIGRSSVSRNVQKLEAQLDTRLFLRTTRSTSLTREGELFFENC 90 Query: 71 SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ E++E S P G+LRI +T G+ ++ L+ F YPDI ++L+L+ Sbjct: 91 QAGVERIVQALEEMRELRSGPPRGRLRIYSTPGFGRKIVAPLLRGFHAQYPDIALELLLN 150 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D + D D + R + ++ S ++ R+L+ + M AAP Y++ P + EL H Sbjct: 151 DRPADFTADRIDVSFREGR-MEDSEIVARQLIPMQMIVCAAPSYVQAHGLPRHVDELAHH 209 Query: 190 NLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 I F + E W VD P+ + N I+Q + G G+A LP Y Sbjct: 210 GCINFRTASGRLKE---WEFRVDGLPLRHHPHASHTFNDPDLILQSVLDGQGLAQLPGYQ 266 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V D LV + Y CY +++ F +++ Sbjct: 267 VCDLLGEGRLVSCLTQYAPDDSGHYICYLSRKHLPARIRVFVDYM 311 >gi|293396447|ref|ZP_06640724.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421049|gb|EFE94301.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 302 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 138/284 (48%), Gaps = 14/284 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F ++GS+T AA L LS+S+I + I LET +G++L R R L+LT++G + Sbjct: 11 AFVAAVKAGSYTQAAGSLGLSRSAIGKSIVRLETRMGVRLLNRTTRSLSLTDEGRVMFDR 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ LE + VKP+G LR++ + GQ + L +L +P+++ ++ Sbjct: 71 CRQILEDLEEVDATMAMRRVKPTGTLRLSAPLSFGQRHILPILDIYLKKWPELRAEVSFS 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR+ +P S ++ R + + + A+P YL + P + ++L H Sbjct: 131 DRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQRIVTCASPDYLSSRGVPQTPEQLTHH 190 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + I + + W T + G R L ++S ++ + + G GI LP Sbjct: 191 DTI----FLLSAEKRRCWRFTTPEGVFVYDGPGR---LNLDSSEAMRESAIAGFGIVHLP 243 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y++ D+ L+ ++E P + YP + +++AF Sbjct: 244 TYLLADDLRRGKLIPVLEKYPFPPEPIRIIYPSKRHLSPRIRAF 287 >gi|91776925|ref|YP_546681.1| LysR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710912|gb|ABE50840.1| transcriptional regulator, LysR family [Methylobacillus flagellatus KT] Length = 298 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 140/303 (46%), Gaps = 18/303 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+++ VF V ++GSF+ AA QL L S++S +++ LE +G+ L R R L LTE Sbjct: 1 MDFNEAAVFVKVVQAGSFSAAARQLQLPTSTVSTRVARLEQRLGVTLLQRTTRRLNLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G S L + L + KP G+LR+ DLG +LL G ++ +P + Sbjct: 61 GRAYFAHASIGLGYLLEAEAALDAARQKPQGRLRVTAPADLGDSLLAGLVQRLQQQHPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++LIL ++ +D+ + D AIR + ++ SSLI + L +A+ YL + Sbjct: 121 EVELILTDRYMDLVAEGIDAAIRTGE-LRDSSLIAKPLGMARWAMFASRAYLASSPRLQQ 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVL 237 Q+L++H + F M W T+ R GE P NS + + Sbjct: 180 PQDLNQHRCLQF-----SPMGRDGW--TLRR--GEDIMTIPLTGSTMANSIGIVRNMALN 230 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G G+ALLP YI K +L R++ + V+ YP KL A + + Sbjct: 231 GQGVALLPTYICKTELAIGSLERVLPQWQAQADPVHLVYPRQRFMPPKLLALIDMAQAEL 290 Query: 295 RDW 297 R W Sbjct: 291 RPW 293 >gi|134291777|ref|YP_001115546.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134966|gb|ABO59291.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 301 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 136/298 (45%), Gaps = 10/298 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L L+ SS+ R + LE +G LF R R +TL++ G Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLELAASSVVRAVDALEASLGTVLFNRTTRQVTLSDAGV 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V +L + + +PSG LR++ + G + ++ L +P + I Sbjct: 64 VYYARAKRVLEELADADALVADRGSEPSGPLRVSVPVAYGLRRIAPHVAALLARHPKLDI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ D AIRL S+ ++ R L T H A+P YL P + Sbjct: 124 DLQLTDERVDLVTSRIDVAIRLGDAAPSADVVARPLGTFRRHVVASPGYLDAHGTPATPG 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H + F + + F + + R L+ N + + + G+GIALL Sbjct: 184 DLVDHACLRFHFGVDQQAWTFVGAQGTTQVVVAGR---LKSNHSEVLCEAALDGAGIALL 240 Query: 245 PDYIVK---DNPNLVRIMEDV-ITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKAR 295 PD++V + L R+ +D +TP + Y + + ++ AF +F+ AR Sbjct: 241 PDWLVDADVEAGRLRRLFDDYDVTPGAARAVITALYLPNQRGSKRVAAFIDFVAALAR 298 >gi|114046062|ref|YP_736612.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113887504|gb|ABI41555.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 330 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI N+L + F+ L+P + ++ Sbjct: 64 FYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPKLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I + +D+ + D A + + + L+ R + T + YA+P YL P + QE Sbjct: 124 VINSAEAVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPDYLAKHGTPKTSQE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241 ++ HN+ F K + W IGE + ++ NS +++ + G GI Sbjct: 184 IESHNVSLFRLSNGKIFNEL-W-------IGEEQAVRVRGNFCSNSVQVAVEFALQGRGI 235 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V + LV ++ ++ Y YP + + F +FI Sbjct: 236 VYAPTEVVSEYVTAGQLVTLLPEIDPHPGECYLAYPSRRYVSLASRRFIDFI 287 >gi|15598331|ref|NP_251825.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107102684|ref|ZP_01366602.1| hypothetical protein PaerPA_01003749 [Pseudomonas aeruginosa PACS2] gi|116051131|ref|YP_790038.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890664|ref|YP_002439528.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254236104|ref|ZP_04929427.1| hypothetical protein PACG_02064 [Pseudomonas aeruginosa C3719] gi|254241829|ref|ZP_04935151.1| hypothetical protein PA2G_02546 [Pseudomonas aeruginosa 2192] gi|296388363|ref|ZP_06877838.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313108458|ref|ZP_07794462.1| putative transcriptional activator [Pseudomonas aeruginosa 39016] gi|9949248|gb|AAG06523.1|AE004737_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115586352|gb|ABJ12367.1| putative transcriptional activator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168035|gb|EAZ53546.1| hypothetical protein PACG_02064 [Pseudomonas aeruginosa C3719] gi|126195207|gb|EAZ59270.1| hypothetical protein PA2G_02546 [Pseudomonas aeruginosa 2192] gi|218770887|emb|CAW26652.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310880964|gb|EFQ39558.1| putative transcriptional activator [Pseudomonas aeruginosa 39016] Length = 306 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 141/289 (48%), Gaps = 12/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +F V SFT AA+ L + +S++SR+I+ LE +G++L R R L LTE G Sbjct: 4 DDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ H + + + PSG LRI + I+ GQ L L +F+ YP I + Sbjct: 64 YYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQITAE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D + D I + +P + S+L+ R+L++ A+P YL P S+ E Sbjct: 124 VELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTSVAE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + L+ + + W + D + +SC N+ + V G+GIA LP Sbjct: 183 LAGHRAV----LLSTDSQRY-WPLSGDSLPCQRVLSC---NNITFAREAVVAGAGIAALP 234 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I + + LVR++ DV P +Y YP K+KAF +F+ Sbjct: 235 ALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283 >gi|221202151|ref|ZP_03575186.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221208788|ref|ZP_03581787.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221171420|gb|EEE03868.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221177945|gb|EEE10357.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 294 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G + Sbjct: 9 AFVRAADALSFVAAGRTLGISASAVGKTIARLEQSLGVRLFNRTTRRITLTDEGRHFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + L + + S+ +P GKLR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDLRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR P+ SSL+ R+L A P YL P + +L+ H Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPHAPCDLEAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + P + +W D + + N+ ++ + G GI +PD++ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + LV +++D +P + + + KL+ F +F+ Sbjct: 245 RGALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|264678250|ref|YP_003278157.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262208763|gb|ACY32861.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 308 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 142/289 (49%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G+FT AA+ L + ++S+++ + LE + +KL R R +T+T G+ + Sbjct: 7 MRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ++ P G+LR+ + + L+ +L EF YP+IQI L Sbjct: 67 DRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPEIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ + AAP YL+ P ++L+ Sbjct: 127 VSDRTVDLISDNVDCVIRGGE-LADQSLVARRIGNLEFITVAAPEYLQRHGVPQHPRDLE 185 Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 N+I F + + +F+ V + + N+Y+S + + G GI L Sbjct: 186 SGHRNVIYFSPVSARRYPLEFHKGGEVIEIASPAHLGINEGNAYISAI---LAGQGIGQL 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + ++ L R++ED P +Y YP + K++AF +++ Sbjct: 243 SRFQIHKYLESGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWV 291 >gi|325922885|ref|ZP_08184605.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325546639|gb|EGD17773.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 344 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 5/297 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + +F V GSF AA L L ++++SR++ LET +G +L +R R + LT Sbjct: 1 MIHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS H + +LE + + + P G LR LG + L EF YP Sbjct: 61 EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ+ + L N+ +D+ AD A+R+ + S+L+ RKL ++ +A+P Y++ EP Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL H + F W + + + ++ L V + + + VL G Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239 Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L D + K LV R++ P + + K++AF +F+ + Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296 >gi|171320095|ref|ZP_02909162.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171094661|gb|EDT39708.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 305 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G Sbjct: 6 SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V ++E + + ++ P G+L++ + + ++ L EFL +P+I I+L Sbjct: 66 YERCVGVLREIEDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPEFLAAHPNISIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ + DC +R+ + S +I R++ ++ AAP YL C P ++ EL Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIARRIGSLTTCTCAAPAYLDRCGAPETVDEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H + + W VD GE RI + VN + ++ V G G+ Sbjct: 185 AQH--VAISHISADTGRPRPWDYVVD---GETRIVQMCGTVAVNDADTYIECGVAGIGLI 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+ + L ++ D P + YP KLK F +++ Sbjct: 240 KTSLYLVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290 >gi|209551924|ref|YP_002283841.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537680|gb|ACI57615.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 301 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V +GS + AA +L LS+S +S +++ LE +G L +R R LTLTE G+ Sbjct: 5 EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGAV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ ++ E SG +RIA + G+ L L FL +PDI++ Sbjct: 65 FLERAGRIVREIDEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLADHPDIELT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D++ +D + D D IR PI S L+ KL A+P YL P S+ + Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPIADSRLVAWKLAPSRRLLCASPDYLARQGMPSSLDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H I + + + + D+ + + +++ L +N+ + + G GIALLP Sbjct: 184 LNSHRGIFYTN---RGVADWRFQTPEGAVVVRAQLA-LGINNGDMLRDAAIAGLGIALLP 239 Query: 246 DYIVKDNPNLVRIME-DVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I + R+ E DV + +Y +P + KL+A + + Sbjct: 240 SFIARPAIREGRLAEIDVGHQPEAEFIYMAHPAGRNPSAKLRAIADHL 287 >gi|222084933|ref|YP_002543462.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722381|gb|ACM25537.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 293 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 137/290 (47%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD +R+F VAR+G A+++L ++ +++SR+++ LE + +L R G LT + Sbjct: 1 MDWDDVRMFLAVARTGQILAASKRLGVNHATLSRRVTTLEERLKTRLLVRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q + +G +RI G + L L + YP++ Sbjct: 61 GEIFLHAAERMETEMLRAQASVGHLDSAITGTVRIGAPDGFGVSFLAPRLGRLIARYPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L +P Q L+ KL + YA+ YL P S Sbjct: 121 RIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASKAYLDKAGLPDS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++ L H I + +ED + A+++ I + ++++ + + G+G Sbjct: 180 VEALKLHPRIGY-------VEDLLFTASLNFSGEIMRSWDASFEISTSIGQTEAVRSGAG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +L DYI + P L RI+ D I+ + Y E+ ++ +++ +F+ Sbjct: 233 IGILHDYIARQYPELTRILPD-ISIKRAYWTTYHESARDLVRVRTVADFL 281 >gi|254254663|ref|ZP_04947980.1| regulatory protein LysR [Burkholderia dolosa AUO158] gi|124899308|gb|EAY71151.1| regulatory protein LysR [Burkholderia dolosa AUO158] Length = 319 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 10/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R + V R GS + AA L L+Q ++ R I LE +G+ LF R GL T Sbjct: 31 WELYRSYLGVLREGSLSGAARALGLAQPTVGRHIEALEKSLGLDLFTRSQSGLLPTPAAL 90 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L R +E + +S G +RI+ + +G +L + + YP+++I Sbjct: 91 EL-RPYAEAMGSSAAALMRAADSQGGVKGTVRISASEVIGAEVLPPIVADLQATYPELRI 149 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L N+ D+ + AD A+R+ +P Q ++L+ R++ + + YA YL P + Sbjct: 150 ELALTNRVHDLLLREADIAVRMTRP-QQNALLVRRVGVLEVGLYAHRAYLARRGTPQAPS 208 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIA 242 EL +H LI F + P F A P+ E R S + Q ++ G+GI Sbjct: 209 ELAQHALIGFDEETP-----FLRAAASTLPV-EWRRHAFTARSDSDLAQLALIRAGAGIG 262 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + + + +P LVR++ DV + + E L+++ + KA + +F Sbjct: 263 VCQVALARRDPQLVRVLPDVFSFPLETWVTMHEDLRHSARCKATFDALF 311 >gi|170733950|ref|YP_001765897.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169817192|gb|ACA91775.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 294 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L LS S+I ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +++ + EL +S P G+LR++ TI LL L +F+ YP+I++ + Sbjct: 69 CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R P S L R L H A+P YL+ P + +L + Sbjct: 126 SDRIVDVIDEGFDVVLRTGHPTD-SRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQ 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W R P + V N+ + + + + G GIA LP++ Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRAPRVGTPPEVPVSMVSNNAETRLCFALRGLGIACLPEF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+D + L +++D + Y +P KL+AF +++ Sbjct: 243 FVRDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYM 288 >gi|15597252|ref|NP_250746.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9948064|gb|AAG05444.1|AE004632_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 300 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 1/195 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + +++ VA + SFT AA L L+QS +SR I LE E+G++L +R R ++LT Sbjct: 1 MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + +LE + L + PSG L+I T LG+ ++ L+E YP + Sbjct: 61 GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRCYPQL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI+ + ++ +D++ + D A+RL + + LI R L + A+P YL+ P Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRGHGTPER 179 Query: 183 IQELDKHNLITFGDL 197 +++L HN T DL Sbjct: 180 LEQLAGHNCPTVRDL 194 >gi|254422904|ref|ZP_05036622.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335] gi|196190393|gb|EDX85357.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335] Length = 302 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 142/297 (47%), Gaps = 14/297 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F V F A L LS+S +++ ++ LE ++ ++L R R ++ T+ G Sbjct: 5 ESMRTFVEVVNHSGFAAAGRHLGLSRSVVNKLVAQLEQDLDVQLLQRTTRRVSPTDMGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +++ ++ + + ++P G LRI + G L + +F+ YPDI++Q Sbjct: 65 YYERCVDILAEVKAAELSVTQMQMQPKGTLRINAPMSFGTMHLAEAIAQFMYQYPDIKVQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D +R+ ++ +LI K+ I AAP+YLK P +++ Sbjct: 125 MTLSDRFVDLIEEGFDVTLRIAAAVEEEALITHKIAPIRRVLCAAPNYLKAHGTPTRLED 184 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIAL 243 L +H+ + +G L W L D+ P I C ++ ++ + + G GIAL Sbjct: 185 LKQHHCLHYGHLATGS----KWRLVGPDKTYTIP-IKCRGYSNNGEVLRESAIAGVGIAL 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP +I+ D + L I+ + T CY + K++ F+ +DW Sbjct: 240 LPTFIIGDALRSNELSIILPNYRPLELTARLCYATNRHLSTKIQLLTTFL----QDW 292 >gi|167579946|ref|ZP_02372820.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] gi|167618023|ref|ZP_02386654.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 324 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G +L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T Q KPSG LR+ LG+ L+ L F YPD+ + L Sbjct: 67 EHCIKIITEIAETDASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDVVLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK EP+ I EL Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPMEIAELA 185 Query: 188 KHNLITF 194 H+ + F Sbjct: 186 AHHAVNF 192 >gi|332284927|ref|YP_004416838.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330428880|gb|AEC20214.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 306 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 17/294 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 DWD LR F VAR+ + AA +L + S++SR+I LE E+G LF + + G TLTE Sbjct: 2 LDWDGLRYFLEVARTQRVSAAALRLGVRHSTVSRRIHALELELGTLLFDKSKSTGFTLTE 61 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G++ ++ L T + E+ S SG LR+ +T G +L + +F +P Sbjct: 62 EGNRFFAYAEQIEGTLITAREEISGQSQTLSGHLRVGSTEGFGNYVLAPLMTDFQRRFPA 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ + I +S AD AI L +P Q + KL+ + Y + Y+ C L Sbjct: 122 ITLDIMPVPRFISLSKREADIAISLERP-QRGPYLCTKLLDYSLKLYGSTEYIARCAPIL 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L +H I + +E+ + L +D + R+ + S ++ + G Sbjct: 181 KKTDLAEHTFIGY-------VEELLFSDRLRYLDDIVANSRV-IFKSTSVIAQYHAALQG 232 Query: 239 SGIALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ +P L ++ D V+T SF +Y C+ E L+++ ++ A +F+ Sbjct: 233 ESLAILPCFMAAQDPRLQAVLNDEIVVTRSFWMY-CH-EDLRHSRRVMALWDFL 284 >gi|304397693|ref|ZP_07379570.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304354865|gb|EFM19235.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 294 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 131/284 (46%), Gaps = 9/284 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R F +AR + A++ L++ Q+++ R+I+ E+ + +LF R R L+E Sbjct: 1 MNWDDVRFFLALARQKTLRGASKSLNVDQATVGRRIAAFESALSSRLFIRTPRAFMLSEF 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ S + ++ + P+G +RIA+T L + ++ YPDI Sbjct: 61 GEQVMAEASAMESAMQAMSRKAACGDSIPAGNVRIASTDTLATVFVIPAIQRLREQYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+ DIS D AIR +P S LI ++L TI M YA+ Y EP Sbjct: 121 TVTLLTGIGFSDISYRSVDIAIRGARP-DSEELIVKRLATIDMGLYASQRYFDRLGEPQQ 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H L+ F D++P+ ++ A + + L+ N+ L + G GI Sbjct: 180 ESGLTDHQLVMFPADMVPRHRQNLCGFAVNSQQV------VLECNTQLLMQSAIKRGIGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 LL ++ +P L+ + + P +P+ L+ +++A Sbjct: 234 GLLSTFLANCDPQLIPVFPEKRDPVDIWLVLHPD-LQKVARIRA 276 >gi|222081049|ref|YP_002540412.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725728|gb|ACM28817.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 289 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 118/247 (47%), Gaps = 7/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ SF AAE + S++SR+IS LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVKAKSFRGAAEVTSVPNSTLSRRISALEKAIGLRLLHRTTRRIELTEAGLI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E +PSG LR++ +D L + EF LYP I + Sbjct: 65 YFERCKRIVDEARLAHEQLGEILAQPSGLLRVSLPVDFANTYLAPLIAEFADLYPGINFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ +P + S +I R L + H +A+P YL+ EP + Sbjct: 125 FDLTPRRVDLVSEPFDVAIRMGEP-EPSHMIARPLARLSPHLFASPRYLELNGEPKKPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + L K N T + IG ++NS I + L GIA+LP Sbjct: 184 LLNHQCLCM--LKTKVWTLSNGTDTDEATIG----GRFRLNSIGMIRRLASLDMGIAMLP 237 Query: 246 DYIVKDN 252 D IV D Sbjct: 238 DEIVSDE 244 >gi|78067951|ref|YP_370720.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77968696|gb|ABB10076.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 349 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEHL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPSLSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|254460904|ref|ZP_05074320.1| transcriptional regulator, LysR family [Rhodobacterales bacterium HTCC2083] gi|206677493|gb|EDZ41980.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium HTCC2083] Length = 301 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 13/275 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ +D LR F + GS + AA +S + S +IS LE+ +G++LF R R LT T Sbjct: 1 MSY-FDNLRTFVRIYELGSMSAAARDQRISPAVTSARISQLESHLGVRLFQRTTRSLTPT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG + V +E + + +++ P G L IA + +G+ L+ ++ EF +P Sbjct: 60 EQGRIFYDGACAVLEAVEAAEAGVGDATENPRGTLHIAAPLGVGRRLIAPHVPEFTREFP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L + ++ ID++ + D A L +P + S+L RK+ AAP Y+ P Sbjct: 120 LVDVRLRMTDRKIDLTAEGLDIAFFLGRP-EDSNLRIRKIADCDRVLCAAPSYIAKHGHP 178 Query: 181 LSIQELD--KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 + E+D KHN + P E F W L+T D P + + + + + Sbjct: 179 KTGAEIDRGKHNCLNL--RFPGARE-FQWELSTPDGPRKFDVQGRFECDDSDVLTDWALQ 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTV 269 G+GIAL P + + D + LV + ED TP V Sbjct: 236 GAGIALRPVFEIADYLTSGALVTVSED--TPPLPV 268 >gi|254247854|ref|ZP_04941175.1| hypothetical protein BCPG_02666 [Burkholderia cenocepacia PC184] gi|124872630|gb|EAY64346.1| hypothetical protein BCPG_02666 [Burkholderia cenocepacia PC184] Length = 301 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF + +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V ++ LV +++ P ++ +P+ Sbjct: 242 WWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|119773147|ref|YP_925887.1| LysR, substrate-binding [Shewanella amazonensis SB2B] gi|119765647|gb|ABL98217.1| LysR, substrate-binding [Shewanella amazonensis SB2B] Length = 290 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA + SFT AA +L +S + +SRQ+ LE +G KL YR R ++LTE G Sbjct: 3 WEGICEFVAVAEAQSFTAAAGRLGISTAQVSRQVRELEERLGSKLLYRTTRKVSLTEDGQ 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R +V L+ + + +P G +R+ + G+ + + ++ +P +++ Sbjct: 63 LFYRHCRQVLDGLDEAERAVSSLKSEPRGLIRMTAPVTYGEQYVMPIVLAYMQQFPQVEV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q L N+ +D+ D AIRL + SS++ RKL + A+P Y+ P S+ Sbjct: 123 QCELTNQQLDLVQGGFDLAIRL-GVLPDSSMMARKLAERVQYLVASPDYVSRHGAPHSLS 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +H + G L ++ L ++ + R+SC N+ L+ + G GIA L Sbjct: 182 ELSRHQCL-LGSLPFWRFQEEGKLRSLKV---KGRLSCSSGNTLLAA---ALAGMGIAQL 234 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + + L+ +++ P ++ YP + + K+ N + Sbjct: 235 PGYYVDEAIRDGRLLVLLKPFQEPKEGIWGLYPHNRQLSPKIGHLMNML 283 >gi|167822985|ref|ZP_02454456.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|226192810|ref|ZP_03788423.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|225935060|gb|EEH31034.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] Length = 294 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ L +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVVDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + P+ + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPQ--SMICNNVETRVCFALRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + L +++ I T + +P + KL+AF +FI Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288 >gi|237509186|ref|ZP_04521901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|235001391|gb|EEP50815.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] Length = 299 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + E P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ ++ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTANLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ G GIA Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270 >gi|90410160|ref|ZP_01218177.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90329513|gb|EAS45770.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 308 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF V SGSF+ A LH++ SS++R I LE ++ + LF R R L LTE+G Sbjct: 3 DLVRVFTQVVESGSFSKAGHALHMAPSSVARNIDNLEKQLRVTLFKRSTRQLLLTEEGQY 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S++ + + +++ PSG LRI+ G + L +FL YP++ + Sbjct: 63 FLVGASKLMEDADQLIRSMDKTNDVPSGTLRISVFESFGNLCINPILPDFLKRYPNVTVD 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LD++ +D++ + D IR+ +P SSL R L+ H A+P YL+ C P + +E Sbjct: 123 IELDDRMVDMNAENIDLGIRIGRP-ADSSLNARMLMPNHTILCASPSYLERCGTPTTPEE 181 Query: 186 LDKHNLI 192 + +HN + Sbjct: 182 VSQHNCL 188 >gi|113971730|ref|YP_735523.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|113886414|gb|ABI40466.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] Length = 330 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI N+L + F+ L+P + ++ Sbjct: 64 FYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPKLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I + +D+ + D A + + + L+ R + T + YA+P YL P + QE Sbjct: 124 VINSAEAVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPDYLAKHGTPKTSQE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241 ++ HN+ F K + W IGE + ++ NS +++ + G GI Sbjct: 184 IESHNVSLFRLSNGKIFNEL-W-------IGEEQAVRVRGNFCSNSVQVAVEFALQGRGI 235 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V + LV ++ ++ Y YP + + F +FI Sbjct: 236 VYAPTEVVSEYVTAGQLVTLLPEIEPHPGECYLAYPSRRYVSLASRRFIDFI 287 >gi|320158517|ref|YP_004190895.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O] gi|319933829|gb|ADV88692.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O] Length = 305 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V SGSF+ A L+++ SS++R I LE + LF R R L LTE+G + Sbjct: 5 LKVFDQVVESGSFSQAGRALNMAPSSVARNIDSLENRIKTTLFKRSTRQLILTEEGQYFY 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +S++ + E++ + P G LRI+ G L + EFL YP IQI+L Sbjct: 65 QQSSKILRDSDNLLAEMRGNHGVPEGILRISVFESFGNLYLTPLIPEFLERYPKIQIELE 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186 LDNK +D++ D D AIR+ P Q S L R L+T + A+P Y+ N P++ E L Sbjct: 125 LDNKLVDLNSDNVDMAIRIGTP-QDSRLKARHLLTNYTALVASPAYI-NTHSPITKPEDL 182 Query: 187 DKHN 190 +HN Sbjct: 183 QQHN 186 >gi|170744291|ref|YP_001772946.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168198565|gb|ACA20512.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 294 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 14/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F R+GS + AA +L S + + +QI+ LE +G +L R R +LT+ G+ Sbjct: 7 MRAFVATVRAGSMSAAAAELGQSPAMVGQQIAALEERLGTRLLNRTTRRQSLTDFGASYV 66 Query: 68 RVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ Q ELQ++ V+ G+LRI G L L + L PD+++ Sbjct: 67 EQCRDILERIALAQEAAELQQTRVQ--GRLRITAPTTFGAEALMPALGGYRLTAPDVELD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++++D+ + D A R+ IQ S++I R L M AAP YL P+ + Sbjct: 125 ITLSDRNVDLVEEGFDLAFRI-GAIQDSAMIARPLAPYRMVVCAAPDYLARRGTPIHPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L+ H I F P + + D R + PR+ + VNS ++ G GI + Sbjct: 184 LEGHEAIAF---TPSARSPWTFARGDDERAVTPPRM--ITVNSGQAVRAAARAGLGIIMQ 238 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P+ +V+ + LVR+ + ++ Y + T +L++F +F Sbjct: 239 PEILVRRDMETGCLVRLFPEWRLGDRPMWLLYHRDRRMTPRLRSFISF 286 >gi|300704962|ref|YP_003746565.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299072626|emb|CBJ43976.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 298 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 131/285 (45%), Gaps = 26/285 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA ++ ++ S++S+ IS LE +G++L R R + T G Sbjct: 5 NFNDLYAFLVVARESSFTKAANEMGMTSSALSQTISALEARLGVRLLSRTTRSVAPTTAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + S + +E LQE +P+G +R+ T + +L L + YP+IQ Sbjct: 65 ERLLQKLSSGFGSIENELQALQELRDRPAGTVRLTTVGHAAETVLWPKLLPLIKAYPEIQ 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI------HMHAYAAPHYLKNC 177 +++ +D + +DI + D +RL LI + +V I M A Y + Sbjct: 125 VEISVDYRLVDIVAERFDAGVRL------GGLIDKDMVAIRISPDKRMAVVATTDYFCDH 178 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 P EL H I G L+P E + +V P+ I N ++ Sbjct: 179 EVPRHPSELGSHTCINLRLPSTGALLPWSFERDGVVLSV--PVAGQYI----FNGSGLVL 232 Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 Q + G+GI +P+ I ++ LVRI+ED P Y YP Sbjct: 233 QAVLSGAGIGCVPEDIAEEYVRAGRLVRILEDWCKPLDGYYLYYP 277 >gi|190892251|ref|YP_001978793.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190697530|gb|ACE91615.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 304 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 136/280 (48%), Gaps = 14/280 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V +GSFT AA L + ++++SR+I+ LE E+G++L R R L+ T+ Sbjct: 2 LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSATDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +S+ +E + L E+ +P+G +RI+ + G + LQ + + L YP Sbjct: 62 GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLSTYPKS 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L + +++ + D A R ++ S+LI RKL + H A+P YL P Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 +L +H+ + G WL ++ P G+ I N ++M + G Sbjct: 181 PADLVRHDCVVAGQ-----STHAQWL--LEGPHGQETIPVSGRFAANEMQAVMAAAIAGY 233 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 GIA LP + L R+++ TP ++ YP + Sbjct: 234 GIARLPHGVANAYIRGGRLCRVLDGYTTPVGGLHVVYPSS 273 >gi|74317134|ref|YP_314874.1| LysR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056629|gb|AAZ97069.1| transcriptional regulatory protein, LysR family [Thiobacillus denitrificans ATCC 25259] Length = 316 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 141/290 (48%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V +GS T AAE+++L++S++SR+++ LE +G+ L R R L LTE G + Sbjct: 7 MQMFVAVVEAGSITAAAERMNLAKSAVSRRLAELEAGLGVSLIQRTTRRLNLTESGRTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E+ + G+L++A G L ++ F+ +PD++++L Sbjct: 67 ARCVAILADVEDAEAEVSQGHGALRGRLKVALPQAFGLLHLAPLIQTFMKRHPDVRLELD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D AIR+ + S+LI R+L I A+P YL P + +L Sbjct: 127 FNDRQVDLMQEGFDLAIRIAT-LADSTLIARRLAAIPHRVVASPGYLARRGTPRAAADLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243 +H+ + + ++ + + P GEP + L +S ++Q + G+ L Sbjct: 186 QHDCLAYSNVRDPGLWSYR------DPGGEPGQVRVVVRLAASSGEFLLQAAIADEGLVL 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + + + L ++ D P Y YP + + AF +F+ Sbjct: 240 LPAFYLHAALRSGQLSEVLADHRWPEPAAYAVYPPTRHLSARAHAFIDFL 289 >gi|229589552|ref|YP_002871671.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361418|emb|CAY48293.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 311 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 142/290 (48%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF V R F AA++L LS + +S++I LET + +L +R +R + LTE G + Sbjct: 19 EDLRVFLTVIRKAGFAAAADELGLSPAYVSKRIQILETTLATRLLHRTSRRIALTEDGER 78 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + R + + EL ++ P G+L I +T G+N + L YPD++I+ Sbjct: 79 VQRWAVHILEDFQQLSDELSDAHDSPRGRLHICSTFGFGRNHVAPALSLLAEQYPDLEIR 138 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +DI + D IR+ I I R+LV+ AAP YL+ P + + Sbjct: 139 LDLLDRVVDIVSEGFDLEIRVGDDIPGQH-IGRRLVSNRRVLCAAPAYLQRRGTPHQLSD 197 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L++H+ + ++ + F W D R+ L N+ ++Q+ + G G+ L Sbjct: 198 LEQHDCL----VLKERDNAFGIWNLEHDGAQESVRVRGPLSSNNGEIVLQWALDGRGVLL 253 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + VK + L++++ T S V+ YP L +GKL+A F+ Sbjct: 254 RSMWDVKPLLEQGKLMQVLHGY-TQSANVWAVYPTRLAYSGKLRACVEFL 302 >gi|209521036|ref|ZP_03269769.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209498530|gb|EDZ98652.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 307 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 134/297 (45%), Gaps = 8/297 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++++F + A GS + AAEQL +S ++ SR +S LE ++G +L R R + LT+ G + Sbjct: 6 QIQLFVLTADLGSLSRAAEQLDMSNAAASRTLSLLEEQLGTRLIERTTRRMWLTDAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 HR V +L + SV P G LR+ +++ L L +FL YP++ +QL Sbjct: 66 HRRCGLVLSELAEADSIAADESVSPRGVLRVTSSVSFAMMHLAPALPDFLERYPNLSVQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 N+ + D AIR ++ S + R+L A+P YL P + Q+L Sbjct: 126 TAANQYHNFIEAGIDIAIRTKEHEGDSGITVRRLAETRRVLAASPDYLSTHGRPQTPQDL 185 Query: 187 DKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H ++ + + P + L + S L N I+ G GI + P Sbjct: 186 GQHRMLIYNLSVDPHQLH----LGRGEDECTVSISSALDSNEGQVIVAAGRAGLGIVIQP 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 YI+ D+ LV ++ED P T+ Y K++ F F+ + R + Sbjct: 242 MYIIHDDIVAGRLVPVLEDWQLPKLTINLAYQSRRYQPAKIRVFSEFLVERVRSQQL 298 >gi|17549131|ref|NP_522471.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431382|emb|CAD18061.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 309 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 15/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V G F AA +L L+ SS++RQ++ LE +G +L R R +TLTE G++ + Sbjct: 7 LSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEASLGTRLMNRSTRSVTLTEAGAQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L++ + E + PSG LR+ + G+ + + FL +P +++ + Sbjct: 67 DDARRILEELDSADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPGMRLDIR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ D D AIRL + + +L+ RKL A+P YL P ++L Sbjct: 127 LTDAMVNLVEDRIDVAIRL-GALTAPNLVARKLAPHRRVICASPDYLGEHGTPAQPRDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN + F L D W T D + P L+ N + + + G+G+ L+P Sbjct: 186 HHNCLLFDYLT----GDSTWTLTRDGKREKVPVSGNLRANGSELLREAAMGGAGMLLMPT 241 Query: 247 YIVKDN---PNLVRIMED-VITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ LV ++E TP ++ Y + + KL F +F+ Sbjct: 242 WLVGDDIAAGRLVPVLEPWTPTPGADEGESAIWAVYLPNRRGSKKLAGFLDFL 294 >gi|254197721|ref|ZP_04904143.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|169654462|gb|EDS87155.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] Length = 299 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGITDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H L+ + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|222081973|ref|YP_002541338.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726652|gb|ACM29741.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 291 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 9/290 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68 VF VA SF+ A +L LS S++S+ ++ LE +G +L R R L LT +G L R Sbjct: 3 VFVQVAELRSFSAAGRKLRLSPSAVSKLVTRLEDRLGTRLLVRTTRSLQLTPEGEVYLER 62 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + E ++ + P G+LR++ ++ G + + EFL LYP++++++ L Sbjct: 63 AQAILADIQEAERMVAAGGAAVPHGRLRVSASVAFGVCYVVPLIPEFLTLYPEVELEISL 122 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + IDI + AD AIR+ ++ SSL RKL+ A+P Y++ P + +LD Sbjct: 123 SDSVIDIVGERADVAIRV-GSLRDSSLKARKLLESRRVIVASPAYIERKGRPETPDDLDH 181 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +TF + P E +++ + +P LQ N+ ++ C+ G G+A + + Sbjct: 182 HNCLTF-NFRPTA-EGWSFRDPHTGSVSVKPVFGNLQANNGPTVRSLCLAGVGLARVGQF 239 Query: 248 IVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK 293 V+ D LV ++ED ++ Y +++AF +F+ L+ Sbjct: 240 HVQPDLDAGRLVPVLEDFNPEDIEMIHAVYAGHDHLAARIRAFIDFLALR 289 >gi|134294260|ref|YP_001117995.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137417|gb|ABO53160.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 294 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 132/288 (45%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F A + SF A L +S S++ + I+ LE +G++LF R R +TLT++G Sbjct: 5 NGIAAFVRAAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + L + + S+ +P G+LR++ + +G L L F YP++++ Sbjct: 65 FYERCQRILEDLRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPAFRECYPEVELD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ +D+ D IR P+ SSL+ R+L A P YL P + Sbjct: 124 LDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPRVPHD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 LD H+ + + P + +W D + + N+ ++ + G GI +P Sbjct: 183 LDTHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVMAGLGIGYMP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D++ + D LV +++D +P + + + KL+ F +F+ Sbjct: 241 DFLARDALDAGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|325526115|gb|EGD03772.1| LysR family regulatory protein [Burkholderia sp. TJI49] Length = 318 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 141/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L R R L+LT +G+ + Sbjct: 1 MEVFTRVVDANSFTRAADTLSMPRASVTTIIQNLEALLGVRLMNRTTRRLSLTAEGAAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ LQ + KPSG LR+ LG+ L+ +L F YPDI + L Sbjct: 61 EHCVKIISEIAEVDSSLQTGNRKPSGLLRVHMPSSLGRRLVIPSLTLFRQRYPDITLDLG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 121 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLRRVTCASPDYLARHGEPREIADLT 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + F + W+ +D +P+ + + VN + + + G G+ Sbjct: 180 EHHAVNF--RVSHGARAVPWVFMIDGKPVEVRMNATVTVNDSDAYVTCGLEGFGMIQPTL 237 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP+ + K++ F +++ Sbjct: 238 FMVLPNLLDGSLVEVLPDCNPKPKPISIVYPQNRHLSAKVRVFADWL 284 >gi|238024793|ref|YP_002909025.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237879458|gb|ACR31790.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 314 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 1 MQVFTRVVDANSFTRAAETLSMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ Q + KP G LR+ LG+ +L L F YPDI++ Sbjct: 61 EHCIRIMTEISEADASFQAGNRKPHGTLRVHLPSLLGRRVLLPALALFHQRYPDIELHFG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D DC IR+ P+ SS++ R++ I + A+P YL+ P SI+ L+ Sbjct: 121 LSDRPVDLVRDGFDCEIRV-GPLADSSMVARRVGVIKRISCASPDYLERYGRPASIEALE 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI----- 241 +H + F W +D + E R+ S + VN + + + G G+ Sbjct: 180 QHRAVNFA--YTSGGRPMPWTFLIDGKLHEVRMNSVVTVNDSDAYVTCALEGFGMIQPML 237 Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++P + + +LV ++ V + YP + + ++ F +++ Sbjct: 238 FSVIPHLL---DGSLVEVLPGVYPKPKPISIVYPHSRHLSMTVRVFADWV 284 >gi|330876238|gb|EGH10387.1| LysR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 301 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 133/292 (45%), Gaps = 14/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ + Sbjct: 7 MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + EV + ++ +++ +P+G LRI + G LL L F +PD+++ L+ Sbjct: 67 QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D AIRL QSS LI R L + AAP YL P ++L Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAPTRPEDLR 186 Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 HN + F P E W T P GE + + N+ + Q G G Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + +LPD +V+ + LV ++ + P + Y + KL++F F Sbjct: 243 VVMLPDALVQRDLQDGRLVALLPEYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294 >gi|229588867|ref|YP_002870986.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360733|emb|CAY47591.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 302 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 132/273 (48%), Gaps = 9/273 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F V+ +GSFT AAEQL S+ +S++IS LE + + L +R R L+LT G+ Sbjct: 5 DDLAAFAVLIEAGSFTLAAEQLGCSKGQLSKRISQLEAQFSVVLLHRTTRKLSLTAAGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ + L +G +R+ + LG+ G L EF YP +QI+ Sbjct: 65 LLPQAQALVVQVDRARQALARLKDDLAGPVRMTVPVSLGETFFDGLLLEFSKQYPQVQIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+N+ D++ D D +R I++ L+ + L+ H A+P YL++ EP + + Sbjct: 125 LELNNRYRDLARDGFDLGVR-SGAIENERLVAKPLLAWHEMTCASPAYLEHYGEPETPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L H + L WL + R+S N Y + + ++G+GIA L Sbjct: 184 LAAHICL----LNSHYSGREEWLYHQQHELLRVRVSGTFASNHYNLLKKAALVGAGIARL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P Y++ + L ++ D T S +Y +P Sbjct: 240 PSYVLPAELADGRLRWLLRDYQTRSMPMYLVHP 272 >gi|167572658|ref|ZP_02365532.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 299 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFMEQWSGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + + P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLADHVATVVADPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSVLCASPGYLAEYGAPTRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ + G G+A Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGVA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRAGALVRVLADCTAPELGIYAVY 270 >gi|76810121|ref|YP_332968.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|167823599|ref|ZP_02455070.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167910386|ref|ZP_02497477.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|226198654|ref|ZP_03794220.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254188333|ref|ZP_04894844.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254258856|ref|ZP_04949910.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|76579574|gb|ABA49049.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] gi|157936012|gb|EDO91682.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|225929397|gb|EEH25418.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254217545|gb|EET06929.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 299 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H L+ + + + W+ V R R++ VNS + + C+ G G Sbjct: 184 LERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGPIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|261492013|ref|ZP_05988588.1| putative LysR family transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312296|gb|EEY13424.1| putative LysR family transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 296 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 141/300 (47%), Gaps = 24/300 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + LR F +VA++ SFT AA Q+ +SQS++S I G+E + IKLF+R R ++ T Sbjct: 1 MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L++ ++ +++ L E G LRI + +++L EF+ YP Sbjct: 61 EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L+ +++ +DI + D IRL + + R M A A+P+YL P Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDAKMTAAASPNYLAQHGTP 180 Query: 181 LSIQELD-----KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYL 229 + +L KH L T G ++ D PI +P+ + N +L Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRD---------PITKKIVKFQPQGNLTANNGFL 231 Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + Y G GI P ++ DN +LV I+ D + YP +N+ LKA Sbjct: 232 -LQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNSPLLKAL 290 >gi|73537527|ref|YP_297894.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72120864|gb|AAZ63050.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 305 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 14/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSFT AA + +S +++SR ++ LE +G +LF R +R L+LT G Sbjct: 6 DFEGLAMFAKVAEEGSFTAAARVMGVSVATVSRGVARLEERLGARLFNRTSRELSLTGFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +Y + E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 QTICDKAGAIYRQAEEAESAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + L + +D+ D D A+R+ + SSL+ R+L + A+P YLK P Sbjct: 126 IDMHLSDASVDLVADGYDAALRI-AALPDSSLVVRRLCAVTQFVVASPAYLKREGRPAHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGS 239 +EL + +++ + D W T +GE L+V + +++ + G Sbjct: 185 RELADRSCLSYAY---RARSDV-WRFT--NAVGEEESVMPTGPLRVTNSEALLPTLLDGL 238 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LP++I + + L I+ D +YF P A K+ A ++ Sbjct: 239 AIAELPEFIAGEYLADGRLETILTDWSLTKGGLYFVTPSARARPAKVAALSDYF 292 >gi|78067279|ref|YP_370048.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77968024|gb|ABB09404.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 300 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 11/298 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + V V +G+F A E + L+Q ++SR ++ LE VGI++F R AR + Sbjct: 1 MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E I+ +S + G+LR+ G +L + EFL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEDAAIDAGQSKARVRGRLRVNVDATFGHYVLAPKMAEFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +++ + ++ D+ D D A+R P + SS R L+ + A+ Y+ Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYC 235 EP ++L D H + D P F W + + L VN ++ C Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPFEWEFHRGKEVVPFDAAGRLMVNDTGMLLGAC 237 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GIA L + +D + L+ ++ + F +Y + + + K++ F +F+ Sbjct: 238 LGGAGIAQLLELYARDILADGRLMLLLPEWADEKFPLYAYHHASNLVSAKVRVFLDFV 295 >gi|296446336|ref|ZP_06888281.1| transcriptional regulator, LysR family [Methylosinus trichosporium OB3b] gi|296256109|gb|EFH03191.1| transcriptional regulator, LysR family [Methylosinus trichosporium OB3b] Length = 300 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF VA +GSFT AAE+L LS++ S+ + LE +G++L R R + +TE G+ Sbjct: 5 EAMRVFVAVADAGSFTAAAERLDLSRAMASKHVMDLEARLGVRLLDRTTRSVGVTEAGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ + T + E + +P G+LR++ G + + F + + ++ Sbjct: 65 YATRCREILDAIATAEQEATSRAAEPVGRLRVSAPSFFGARFVAPLVAAFAERHLRVGVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD+K +D+ + D AIR+ + ++ SSL+ ++ + + AP YL P + Sbjct: 125 LALDDKFVDLVEEGFDLAIRIGR-LEDSSLVASRIASTRLMICGAPSYLDRRGRPRGPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H + + F D P G + S NS ++ V G G+ Sbjct: 184 LSGHECLRYSHATVGAAWPF------DGPDGPELVRLSSRFASNSAEALCAMAVAGLGLV 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+ V + L +++ D + ++ +P K++AF F+ Sbjct: 238 CAPDFYVAEPLRAGALEQVLADRMIEPLGIFIVHPSRRHVPSKVRAFIEFL 288 >gi|262376435|ref|ZP_06069664.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145] gi|262308574|gb|EEY89708.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145] Length = 294 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 144/293 (49%), Gaps = 16/293 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD LR F V+AR+ + T+AA + + S+++R+I LE +G +LF R A G LT Sbjct: 1 MKVDWDHLRFFLVLARAKTLTNAARLIGVEHSTVARRIQALENTLGTQLFKREATGYELT 60 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E + I++ + G++RI G L L EF Y Sbjct: 61 SEGLALVPRV-----EQMEQSFIQIDKRHDPLQGRVRIGAPEGFGTAFLARLLAEFSQHY 115 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD I + +P +S I +L + Y + HYL+ E Sbjct: 116 PLLTIDLIPVPKAIKLSHREADIVIAIDRP-KSGPYIITRLSNYCLKLYGSQHYLQQNPE 174 Query: 180 PLSIQELDKHNLITF-GDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVL 237 +++L +H + + DL+ L +++R P+ +C + NS L+ Sbjct: 175 IKKLEDLQQHRFVDYIDDLVYSTA-----LYSLERLPLQVS--ACFRSNSILAQEIAVRA 227 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+A+LP ++V D L ++ ++ + T + L++ K+K +F+ Sbjct: 228 GAGLAILPKFLVNDKSELKEVLGQQLSFTHTFWMLTLVDLQHEPKIKLVWDFL 280 >gi|311108827|ref|YP_003981680.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763516|gb|ADP18965.1| bacterial regulatory helix-turn-helix protein, LysR family protein 179 [Achromobacter xylosoxidans A8] Length = 298 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V G F A+ Q+ LS +++S+ I+ LE+ + +L R R ++LTE G++ + Sbjct: 7 LKVFRQVVERGGFAAASRQMGLSPAAVSKNIAELESHLAARLLNRTTRRMSLTEAGARYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L + L PSG LR++ + L L + FL YP + + L Sbjct: 67 EQVARILDDLGEAEQSLGPLQQAPSGTLRVSAPMSLSLVRLSAAMPRFLERYPQVSLDLN 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ IDI + D AIR ++ SSL+ RKL+T+ AP Y + P S L Sbjct: 127 LEDRRIDIVKEGYDVAIRGTDRLEDSSLVARKLMTLDHVLCGAPAYFERHGLPASPLALR 186 Query: 188 KHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + F L E F +R P +V+S L++ G G++L+P Sbjct: 187 GMERVQF-TLSGHADEWTFKRAGETER---VPVRGRYRVSSSLAVRDALRAGFGVSLVPR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 V+ D+ L +++D VY YP K++AF +F+ Sbjct: 243 IYVQQDLDSGALQAVLQDWQPDETYVYAVYPSRRHMVAKVRAFVDFLL 290 >gi|261253484|ref|ZP_05946057.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] gi|260936875|gb|EEX92864.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] Length = 293 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 14/275 (5%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +KLR +F + GSFT AEQ S+S +S++IS LE E+G +L +R R + LT Sbjct: 2 NKLRAIELFVRLTEVGSFTRLAEQQRTSKSMVSKEISRLEQELGARLLHRTTRNIQLTYV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +E+ K+E ++ + P GK+++ + LG L +F+ +PD+ Sbjct: 62 GEEYLKYANEILAKIENADAFVKTLAQAPRGKIKVNAPMALGITDLSMLFADFMQAFPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + L +++ID+ + D R S+ I + L + H A+ Y + + Sbjct: 122 DLDIHLGDENIDLVAEGFDLGFRASSQTFDSNYIGKALCEFNYHLCASRDYFSHHAPIQT 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L +HN + K + W VD I L+VNS L ++Q G GI Sbjct: 182 KQDLLQHNCFEYSYFKGKNV----W--PVDGVIATS--GSLRVNSVLFMLQVIKAGRGIG 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 LP+++ + +N LV ++ D T+Y YP Sbjct: 234 YLPEFVCRELLENGQLVEVLPDSEKSKLTLYALYP 268 >gi|171323082|ref|ZP_02911716.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171091525|gb|EDT37152.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 305 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AAE L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 6 DLEAWAIFARVAETGSFAQAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G L L FL YP + Sbjct: 66 ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + SSL R+L + A+P YL+ P Sbjct: 126 IDLVLSDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLERRGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++++H +T+ +L P+ N + D +G ++ N+ I + G G+A Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPASGED--VGVSVHGRIRANNADVIAPALLAGHGLA 242 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 L P+++V D L R + + P + + + G L+A R + L Sbjct: 243 LQPEFLVWD--ALQRGELEEVMPEWKIADINVNLVTPPGMLRAARVTVLL 290 >gi|301156291|emb|CBW15762.1| predicted DNA-binding transcriptional regulator [Haemophilus parainfluenzae T3T1] Length = 299 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V + SFT AA Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISVFCKVIETQSFTQAANQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIVPTEAGML 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L + + G L I+ D G + NL +F+ L+P++ ++ Sbjct: 65 YYQRCQAILLDLSEADSSISNMATSLQGNLLISVPRDFGLLYISPNLPKFIELHPNLHVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K +D+ + D A+R+ +Q SSL+ RK+ + MH A+P YL+ PL+ + Sbjct: 125 IEFEDKRVDLVAEGYDLALRIGY-MQDSSLVARKISSSLMHFVASPSYLEARGTPLTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ H G L + +W +T I +I V N+ +++++ G GI+ Sbjct: 184 LEYHQ----GLLYKSSLNQVHWQSTKANQIQRYKIQSKVVSNNGMALLEMTKAGLGISNA 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+ VKD + +LV I+ + +Y YP K++AF F+ Sbjct: 240 PDFFVKDALASGDLVEILSEYKQKPLDIYVVYPNRRHLPAKVRAFIEFL 288 >gi|157963029|ref|YP_001503063.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848029|gb|ABV88528.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 297 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 141/289 (48%), Gaps = 13/289 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F V +S F+ AAE L S S +S++++ LE+ +G++L R R + LT +G Sbjct: 5 FDGIVIFVQVVKSAGFSAAAEVLGHSTSYVSKEVNKLESRLGVRLLNRTTRSIGLTPEGD 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E + + V P G L+++ + Q L+ + E+L YP++ + Sbjct: 65 AYYQQCLQLISDAEQAIGLITQHDVSPRGVLKLSCPVGFAQQHLKPIISEYLKRYPNVSL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L +K D+ D D AIR ++ SSLI RKL + + A+ Y+ +P + Sbjct: 125 DLDLSDKRTDVIADGYDLAIRASAQLEESSLICRKLYSCKAYTVASKEYISRHGKPHHPR 184 Query: 185 ELDKHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL+ HN I + + D+ +VD P+I C N L++ + G G Sbjct: 185 ELETHNGICYSNHKQPSRWDYIDHDGKHFSVDI---RPKILCNNGNMQLNL---ALAGHG 238 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I LP++ ++ +N L + + + + V+ YP + K++AF Sbjct: 239 ITRLPNFYMQGELENDQLEILFDKFPSANIDVFVVYPSRKHLSPKVRAF 287 >gi|27366629|ref|NP_762156.1| transcriptional regulator [Vibrio vulnificus CMCP6] gi|27358195|gb|AAO07146.1|AE016808_166 Transcriptional regulator [Vibrio vulnificus CMCP6] Length = 305 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 3/184 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V SGSF+ A L+++ SS++R I LE + LF R R L LTE+G + Sbjct: 5 LKVFDQVVESGSFSQAGRALNMAPSSVARNIDSLENRIKTTLFKRSTRQLILTEEGQYFY 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +S++ + E++ + P G LRI+ G L + EFL YP IQI+L Sbjct: 65 QQSSKILRDSDNLLAEMRGNHGVPEGILRISVFESFGNLCLTPLIPEFLERYPKIQIELE 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186 LDNK +D++ D D AIR+ P Q S L R L+T + A+P Y+ N P++ E L Sbjct: 125 LDNKLVDLNSDNVDMAIRIGTP-QDSRLKARHLLTNYTALVASPAYI-NTHSPITKPEDL 182 Query: 187 DKHN 190 +HN Sbjct: 183 QQHN 186 >gi|251788162|ref|YP_003002883.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247536783|gb|ACT05404.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 298 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 133/290 (45%), Gaps = 20/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA Q +++SS+S +IS LE +G++LF R R L LT G + Sbjct: 8 MALFALVAECGSFTEAARQAGMAKSSLSLRISQLEQALGLRLFNRTTRKLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E ++ + PSG+LRI LG LL EF L +P + + ++ Sbjct: 68 VHCREMRQASERAEMAMLHLRNNPSGRLRITAPAGLGATLLARLTAEFQLRFPAVSLDIV 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ + D A+R KP Q SSLI R L + + A+ YL + ++L Sbjct: 128 VADRVIDLVEEGFDVALRTGKP-QDSSLIGRSLGQVPHYLVASTAYLAGFAPIMHPRDLQ 186 Query: 188 KHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG-SGIA 242 H IT + E F W R+ + L + C L GI Sbjct: 187 SHRCITHRAWPEWGFHRETEYFLW-----------RLPQSHITDNLLYARACALADGGIT 235 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP ++ + D LV ++ + + +Y YP N+ L F +F Sbjct: 236 LLPTFLCREPLDRGELVCLLPEWQADTNDLYLIYPGRKLNSPALNCFIDF 285 >gi|182677572|ref|YP_001831718.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633455|gb|ACB94229.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 304 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 103/186 (55%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V A GSF+ A +L+LS+SS+ + ++ LE +G++LF+R R LTE+G + Sbjct: 9 IFLVCADEGSFSAAGRKLNLSRSSVGKTVARLEDMLGVRLFHRSTRHQALTEEGKIYYEH 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +++L+ + PSG LR+ + LG++ + L +F + D+++ L L+ Sbjct: 69 ARRAHNELDRARQIFASGHRSPSGILRVTAPMSLGRSCIGPLLLDFTSRFSDLKLVLSLN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR+ I ++ + RKL T M YA+P YL P S E D+H Sbjct: 129 DRPVDLIDEGFDLAIRVGATINTTGIAGRKLSTQAMRLYASPSYLGARGTPKSCGEFDQH 188 Query: 190 NLITFG 195 ++ +G Sbjct: 189 QILAYG 194 >gi|159186538|ref|NP_396136.2| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141598|gb|AAK90577.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 299 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 25/294 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V +GS AA +L +++S +SR+IS LE +G L R +G LT+ G + H Sbjct: 15 FIRVVETGSIAGAASRLGIAKSIVSRRISRLENFLGATLLTRSQKGTALTDVGREYHLRA 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +LE+ Q + S+ + SG++R++ + G+ L L EF LL+P I + ++ Sbjct: 75 ASGLAELESAQEMVVRSTTEASGQVRVSVPVAFGEFCLAPLLAEFALLHPRIHFDVRFED 134 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + D+ + D A+R+ I S LI RKL + A+P YL+ P EL HN Sbjct: 135 RQPDLVAEAYDLAVRI-GSIPDSVLITRKLAKVRWAVVASPSYLEARGRPSKPSELAAHN 193 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIALL 244 I + + F W R G ++VNS ++ G GI +L Sbjct: 194 AILY------SFDTFGW-----RFQGPDGWEQVRVNSQFRSDNGQMMLSAARAGLGIVVL 242 Query: 245 PDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLK 293 P ++V+++ + E + P ++ ++ P A +++A NF++ K Sbjct: 243 PVFMVQESLASGDLEE--VVPGYSHAGADLHILMPPARAGIARVRALVNFLYEK 294 >gi|222110064|ref|YP_002552328.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221729508|gb|ACM32328.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 310 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 21/298 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + F V + SFT AA+ LH+S++++++ + LE + ++L R R + +T +G+ Sbjct: 4 FDAMVAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVRLLNRTTRKVNVTAEGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + L +S P G+LR+ L + +L F YPDIQ+ Sbjct: 64 AYYERVVRLLGDLDDAETSLTSASSAPRGRLRVDVPSPLARMVLVPAFAAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R +P +SL+ R + + M YAAP YL N PL + Sbjct: 124 HMGVSDRVVDLIDENVDCVVRGGEP-GDASLVARHVGDLSMGLYAAPTYLANAGMPLHPK 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L+ H+++ F G ++ + + V +G I+ N+YL+ V Sbjct: 183 NLEAAPHHIVGFLGSSTGRVLSCVLHRGDEQVRV---MGRYAIATDDGNAYLAA---GVA 236 Query: 238 GSGIALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G LP Y+ P+L R + ED +Y +P +L+ F +++ Sbjct: 237 GLGALWLPQYMAA--PHLARGELAPLFEDWAIAPMPLYIAFPPNRHVGARLRVFMDWM 292 >gi|170719261|ref|YP_001746949.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169757264|gb|ACA70580.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 295 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 16/293 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L+ + S+++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLSAAKRLNTTHSTVARHIESIEKSLGTPLFVQHAQGYELTPS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + ++ P GK+R+ T +G + YP + Sbjct: 62 GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFDRYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + LI RKL + YA+ YL + Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-SADLLITRKLTDYRLALYASQAYLDRAPPLRN 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H+ I + D + E L ++ P ++ + S ++ G GIA Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNVA-FRSTSVIAQQTAARAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIF 291 +LP+Y+ + +P LVRI+ PS T+ + C L + +L+ +++ Sbjct: 235 VLPNYMARHDPTLVRIL-----PSETIQRSYWICTRRELHKSVRLRVVWDYLL 282 >gi|186474802|ref|YP_001856272.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184191261|gb|ACC69226.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 362 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL P ++L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARHMRSASIVTRRLTTGCMTVCATPAYLDKHGTPTRPEQLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ V N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPDGEVRVRPTNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDTTRGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|54301849|ref|YP_131842.1| hypothetical protein PBPRB0169 [Photobacterium profundum SS9] gi|46915269|emb|CAG22042.1| Hypothetical protein PBPRB0169 [Photobacterium profundum SS9] Length = 297 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 146/289 (50%), Gaps = 8/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R + V GSFT A++L+++Q SIS++I+ LE +VG L YR +R + LT QGS Sbjct: 7 DCMRAYIRVTHLGSFTAVADELNVTQGSISKKIAWLERDVGFSLLYRSSRRVELTAQGSS 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++E T+ L+ + G+L ++ + LL + F+ P + I Sbjct: 67 YLTYCEQMIEEMELTEAALKGELDEVVGELTLSVPSAMATRLLAKPIGMFMTQNPKLVIN 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++++ +++ D AIR + + S+ R L +A+P YLK P++ + Sbjct: 127 VSVNDRVVNLIESGIDIAIRASE-LADSAYKARFLFHNQAVYFASPDYLKQHARPVTASD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L++H +T+ P D + D + + +++ + +S ++ + G G+ +L Sbjct: 186 LEQHECLTYSLASPS---DIWLVKQKDSLVQKVKVNEVFKSDSAEMLLAMALSGHGVGVL 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V+ DN LV+++ED S +Y Y +++AF +F+ Sbjct: 243 PSWMVEQCLDNNQLVQLLEDYTATSLPMYAVYKSGEYQPYRIRAFIDFL 291 >gi|238028949|ref|YP_002913180.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237878143|gb|ACR30476.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 352 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 133/285 (46%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + L Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRYPKVVPDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGVPTHPEHLM 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ V N+ + Q+ +LG GIA+L Sbjct: 187 EHPSLSLPS------EYWGDERVFTGPDGEVRVRPTNVVVANNTEMLRQFALLGMGIAML 240 Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGGDTARGKLVRLLPDYRLPQVEINVAYPSRRHLPAKVRTF 285 >gi|254482988|ref|ZP_05096223.1| LysR substrate binding domain protein [marine gamma proteobacterium HTCC2148] gi|214036673|gb|EEB77345.1| LysR substrate binding domain protein [marine gamma proteobacterium HTCC2148] Length = 292 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 13/293 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S W+ + F V R GSFT AA+ L +S+S +SRQI+ LE + +L R R ++ T+ Sbjct: 3 SHRWESIEAFERVVRLGSFTRAADDLGVSRSHVSRQINALENRLDAQLLLRTTRKVSTTD 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + +V L+ + + + P G LR+ G++ + +F+ Y D Sbjct: 63 VGQAFYMQCRQVLDNLDEAERAVLDLQANPRGILRVTVAGAFGEDFIAPAALDFMAEYRD 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L N+ ID+ + D AIR ++ SSLI R++ T + A+P YL P Sbjct: 123 LIVELNFSNRLIDLISEGYDVAIRA-GTLKDSSLIARRISTRKLLTCASPEYLLRNGTPS 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 SI L HN + G L +W + + R+S + N+ S+++ G G Sbjct: 182 SIHSLTNHNCL-LGTLD-------SWRFRENGRNQDLRVSGNWRSNNGRSLLRAARAGLG 233 Query: 241 IALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LP Y+ +D + L+ ++ED V+ YP + K++ F NF+ Sbjct: 234 LVQLPSFYLDQDIIDGALLPVLEDYNPTDTGVWAVYPHNRHLSAKVRLFVNFL 286 >gi|170696696|ref|ZP_02887812.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170138399|gb|EDT06611.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 306 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 22/304 (7%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + + V + GSF A L +SQS +SR ++ LE +GI+LF R R + Sbjct: 1 MPFDERVLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + LE + G+LR+ + +L L F+ Sbjct: 61 TLTDEGRRFYEQIVPLLSGLEDAAASAARGATAVRGRLRVNMDPFFSRLVLGPRLGGFVD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+Q++LI ++ D+ D D AIR +P SSLI RKL+ + AAP YLK Sbjct: 121 KHPDLQLELITRDQLGDMVGDGFDVAIRFGEP-PVSSLIARKLLDTRILTVAAPSYLKKH 179 Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229 P + EL+ +H I F D P F+W R P G L VN Sbjct: 180 GHPANPAELESGQHACIKFRD--PLTGYPFSWEFHRGRKKIVVTPQGR-----LTVNDVG 232 Query: 230 SIMQYCVLGSGIALL---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ C G GIA + + + LV + + + +Y YP K++AF Sbjct: 233 TLHSVCAAGQGIAQILALGAEALLASGKLVELFPEWGDELYPLYALYPSRHHPPAKVRAF 292 Query: 287 RNFI 290 +FI Sbjct: 293 IDFI 296 >gi|295681411|ref|YP_003609985.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295441306|gb|ADG20474.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 296 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 132/276 (47%), Gaps = 13/276 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +L F+ V +G F+ AA + SQS+IS+ I LE +G+ LF R R +TLT+QG Sbjct: 4 FHELNAFFAVVEAGGFSAAARRTGESQSAISKSIGALEKRLGVLLFNRSTRRVTLTDQGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + T + ++E EL S++ SG +RIA+ G+ + + E L +P +++ Sbjct: 64 RYYERTKPLLDEIEVADSELTSSTLDVSGLVRIASASTFGRLHVLPLIPELLSRHPGLRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L + D+ D D AIR+ S+++R + + + + Y + P Sbjct: 124 DLVLSDFVRDMVEDRIDLAIRVGSINDPDSVVKR-IASTPLVCVGSRRYFEQYGVPKEPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGI 241 EL HN + +G L +E NW P G P L NS +I + G GI Sbjct: 183 ELANHNCLLYGGL----LESANW--PFHGPRGRFSVPVRGNLSSNSVETIRSAVLAGVGI 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 L + D +P++V +++D I + V +P Sbjct: 237 GLFAKLSLADELKHPDIVTVLDDFIRDARDVSVIWP 272 >gi|238022638|ref|ZP_04603064.1| hypothetical protein GCWU000324_02547 [Kingella oralis ATCC 51147] gi|237865841|gb|EEP66977.1| hypothetical protein GCWU000324_02547 [Kingella oralis ATCC 51147] Length = 289 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 18/252 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ +F VA++ F+ AA +L + QS++SR+I+ LE +G++LF R R L LT G+ Sbjct: 5 NEMALFVEVAQANGFSRAAAKLGMPQSTLSRRIAALEDALGLRLFNRSTRRLELTGAGAY 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + L E G LR++ +D+ N++ L EF YPD+++ Sbjct: 65 YLERALPIVAEARLLHGALDEMRETVRGALRVSLPVDMAYNMVAPLLPEFAARYPDLRVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +D+ + D A+R K + S I L YAAP YL EP S + Sbjct: 125 FDVTPRKVDLIGEPFDLAVRTGK-LPDSDYIATPLAEFSGCLYAAPGYLAQRGEPQSPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240 L H + F D + W TV R G R+ S NS + Q +G G Sbjct: 184 LAAHECLRFSDGL--------W--TVQR--GSERVTVQPQSRFGANSPGMLRQMAAVGLG 231 Query: 241 IALLPDYIVKDN 252 IALLP+ +V+D+ Sbjct: 232 IALLPEILVRDD 243 >gi|87120816|ref|ZP_01076709.1| hypothetical transcriptional regulator [Marinomonas sp. MED121] gi|86164044|gb|EAQ65316.1| hypothetical transcriptional regulator [Marinomonas sp. MED121] Length = 287 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 121/248 (48%), Gaps = 12/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GSF AA +L+ S+S +S Q++ LE G++L +R R L LT +G K++ Sbjct: 1 MAIFVTVVEAGSFAAAARKLNSSRSRVSEQVAQLEAAAGMRLLHRSTRQLALTSEGEKVY 60 Query: 68 ---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ E+ H++E S +PSG++ I+TT D+ L L EF YP +Q+ Sbjct: 61 AKAKILPELIHEIEAV-----ASPAEPSGRVAISTTHDIAIKHLIPVLNEFQRRYPKVQV 115 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 LI+ ++ +D+ + D AIR+ P SLI R + YA+P YLK P ++ Sbjct: 116 DLIISDQKLDLIAEQIDIAIRIGLP-NDDSLIGRVMYEERSALYASPAYLKEHGRPKTLG 174 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +H + + + + +P+ NS L + G GI+ L Sbjct: 175 ELAQHKWVVISQMSQNGEQSLIYQG---KPVHINPAYYQLTNSPLVAQSLTLAGHGISTL 231 Query: 245 PDYIVKDN 252 VKD Sbjct: 232 LPVTVKDE 239 >gi|332715762|ref|YP_004443228.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325062447|gb|ADY66137.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3] Length = 297 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 6/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR SFT AA +L +SQS++S + LE +G++L R R ++ TE G + Sbjct: 7 NDLAAFIAVAREQSFTRAAAKLGVSQSALSHTLRQLEARLGVRLLMRTTRAVSPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E L E KP+G +RI +L L++FL YPDI+++ Sbjct: 67 LLNGIGPHFDEIEAHVDALNELREKPAGTIRIVAAEYAITYVLWPKLRKFLPQYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LILDN DI + D +R+ + + + R + +P Y KN P ++ Sbjct: 127 LILDNGLTDIVTERYDAGVRMGEHLAKDMISARIGPDFCLAVVGSPAYFKNRPHPRHPKD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+ I F +P + W R I L N+ + ++ + G G+A + Sbjct: 187 LVGHDCINF--RLPSAGGLYVWEFEDKGREIKIKVDGQLAFNNSFNSLEAALDGFGLAYI 244 Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYP 274 P+ ++ + LVR+++ P Y YP Sbjct: 245 PEEMILPYVADGRLVRVLQKYSPPWDGYYLYYP 277 >gi|193077534|gb|ABO12366.2| putative transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 300 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QNLL L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNLLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QLI+ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237 S EL H +++ + + ++ L D + + ++S + N Y+ + Q Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD +D + LV+I+ D + YP G L A R FI Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|296115882|ref|ZP_06834506.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977570|gb|EFG84324.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] Length = 306 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 132/282 (46%), Gaps = 17/282 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F VA GSF AAE++ LS+ ++S+ I LE +G+ LF R++R ++LTE G Sbjct: 5 DFEAWAIFAKVAEFGSFARAAEEVQLSKPTVSKAIGRLEQALGVALFNRNSRHISLTEMG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + + E + E + + +PSG +RIA + G L L FL YPDI Sbjct: 65 RMLLGHANRILAEAEAAETEARGGTQRPSGLIRIAAPMTFGIGHLSPVLPAFLAKYPDID 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + + +D+ + D A+R+ + SSL RKL + + A+P YL P Sbjct: 125 ITVDFSDALVDLVAEGYDVALRIAS-LADSSLRARKLCEVRLLLVASPEYLDRVGRPDHP 183 Query: 184 QELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++L+ H + G + + + + N PR ++L + Sbjct: 184 RDLETHKSFVYTNTSAPGKVRLRQVNNGNEFVLTQ----TPRFRADNAEAFLPAL---AA 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 G G L P+++V + + RI+ D P+ +Y P + Sbjct: 237 GLGFGLFPEFMVGEGLASNRFERILPDWEAPAIALYLVTPSS 278 >gi|221197596|ref|ZP_03570643.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221204270|ref|ZP_03577288.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221176436|gb|EEE08865.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221184150|gb|EEE16550.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 335 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 149/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +V R SF+ AAEQL +S + +S++I+ LET++G +L +R R +T+TE G + Sbjct: 36 EDLRVFSLVVRLASFSAAAEQLAVSAAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAGER 95 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G++++ L +F YP + ++ Sbjct: 96 VFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 155 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L + A+P YL P ++ + Sbjct: 156 LDLFDRLVDVAAEGYDLDVRIGDEI-ADRLIARRLAANYRVLCASPDYLARRGMPRTLAD 214 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233 L H+ + + D P G R++ ++V LS +Q Sbjct: 215 LASHDCLAIKER--------------DHPFGVWRLNVRGDTVTVKVGGALSTNHGEVAVQ 260 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + D+ L R++ D + P+ ++ Y E + + K++ +F+ Sbjct: 261 WALAGRGIVLRSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFL 319 >gi|239815514|ref|YP_002944424.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239802091|gb|ACS19158.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 314 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 140/289 (48%), Gaps = 7/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+VF VA +GSFT AA++L L +++IS + LE ++G +L +R R + LT G Sbjct: 5 DLLKVFLRVAETGSFTRAADRLALPRATISTAVQQLEAKLGSRLLHRTTRRVGLTPDGEV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +E + + S + SG+L++ + + L+ L +F YP I+++ Sbjct: 65 LLERARTLVADMEDIEQQFLPSRSQVSGRLKVDVPSRIARRLIAPALPDFFERYPAIELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ ++ DCA+R+ P+ SSSL+ R L + A+P YL P + + Sbjct: 125 LGSSDRAVDLVLEGVDCALRV-GPLASSSLVARPLGHFTLINCASPAYLARHGTPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H + + P W D R+ S + N+ + + + G G+ + Sbjct: 184 LPEHIAVNYAS--PTSGRAAPWEWQRDGETATLRMRSQVSANNAETYIACALAGLGLIQI 241 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V+++ L ++ + V+ YP + +++AF ++ Sbjct: 242 PAYDVREHLAAGELAEVLPEARAQPLPVHLVYPHRRNLSRRMQAFAGWL 290 >gi|167565553|ref|ZP_02358469.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 299 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 16/274 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFMEQWSGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + + P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLADHVATVVADPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSVLCASPGYLAEHGAPTRPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ + G G+A Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGVA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 LLP + + LVR++ D P +Y Y Sbjct: 237 LLPTFAAAEPIRAGALVRVLADCTAPELGIYAVY 270 >gi|296389531|ref|ZP_06879006.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 300 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 1/195 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + +++ VA + SFT AA L L+QS +SR I LE E+G++L +R R ++LT Sbjct: 1 MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + +LE + L + PSG L+I T LG+ ++ L+E YP + Sbjct: 61 GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI+ + ++ +D++ + D A+RL + + LI R L + A+P YL++ P Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTPER 179 Query: 183 IQELDKHNLITFGDL 197 +++L HN T DL Sbjct: 180 LEQLAGHNCPTVRDL 194 >gi|254247369|ref|ZP_04940690.1| Glycine cleavage system transcriptional activator [Burkholderia cenocepacia PC184] gi|124872145|gb|EAY63861.1| Glycine cleavage system transcriptional activator [Burkholderia cenocepacia PC184] Length = 294 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L LS S+I ++I+ LE + ++LF+R R +TLT +G++ Sbjct: 9 VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V +++ + EL +S P G+LR++ TI LL L +F+ YP+I++ + Sbjct: 69 CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D +R P S L R L H A+P YL+ P + +L Sbjct: 126 SDRIVDVIDEGFDVVLRTGHPTD-SRLSSRLLGHFRQHLVASPDYLERHGAPRTPADLAL 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H + + P + W R P + V N+ + + + + G GIA LP++ Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRAPRAGTPPEVPVSMVSNNAETRLCFALRGLGIACLPEF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+D + L +++D + Y +P KL+AF +++ Sbjct: 243 FVRDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYM 288 >gi|307307399|ref|ZP_07587135.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307321897|ref|ZP_07601281.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306892456|gb|EFN23258.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306901913|gb|EFN32513.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 299 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 8/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +RVF VA+ SFT AA QL ++ +++R +S LE +G++L R R ++LT G Sbjct: 3 DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRAVSALERSLGVQLLLRTTRQVSLTSAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + +L+E +G +RI + LGQ LL + F +P + Sbjct: 63 AVYAARVEPLIRQFDQVRDDLREEQGDVAGLIRINAPLSLGQQLLPDIVSGFRAEHPQVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L ++ IDI + D A+R+ + + S I RK+ + A+P YL P + Sbjct: 123 VSLSLTDRFIDIVSERFDLALRVSEAPRDRSTIWRKVCRVRRILVASPGYLAIFGTPETP 182 Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H I + + I + E N T G+ L N+ I + G G+A Sbjct: 183 DDLSRHGCIAYDEEAISETWELTNGGRTRKALAGK----VLAANNGELIAKLVEDGQGLA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP +IV D L +++ + P + YP K ++ F +F Sbjct: 239 LLPHFIVGDALARGALKQVLAEWEPPELWLTLYYPPYEKLPMRVARFSDF 288 >gi|288960625|ref|YP_003450965.1| transcriptional regulator [Azospirillum sp. B510] gi|288912933|dbj|BAI74421.1| transcriptional regulator [Azospirillum sp. B510] Length = 309 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 14/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +L VF +A + + AA+ L +S S +SR ++ LE +G++L R R L LT +G Sbjct: 4 FTELEVFTKIAEEANLSRAADALGISVSGVSRHLASLENRLGVRLVQRTTRQLYLTPEGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 E+ + + + +P G LRI ++ G L ++EF +P +QI Sbjct: 64 SFAANAREILSTMREAEASVSMVVAQPRGTLRIGASLSFGLLHLMPVIREFRARHPLVQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + N+ D+ D AIR R+ SS+ RKL A+P YL+ P + Sbjct: 124 DLKISNRYQDLVESGLDIAIRTRRVEMDSSVTIRKLAETRRLIAASPDYLRERGMPAEPK 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 +L KH+L+ + +D + L+ GE P + N + Q + GSG Sbjct: 184 DLSKHDLLLY-----SLADDPDHLSLARN--GELVRIPLTGQMICNDGQILRQAALDGSG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P YIV + LVR++ D P T+ +P + + F N + Sbjct: 237 IIIQPAYIVHADIKAGRLVRVLPDWELPRLTMNLAFPSRTHLPARTRLFINAL 289 >gi|254506674|ref|ZP_05118814.1| transcriptional regulator, LysR family protein [Vibrio parahaemolyticus 16] gi|219550255|gb|EED27240.1| transcriptional regulator, LysR family protein [Vibrio parahaemolyticus 16] Length = 312 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 10/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++ +F VA+ SF+ AA+QL +S+S +S QI LE E+ L R R + LT G Sbjct: 8 FERYALFSEVAKQLSFSKAADQLGISRSYLSSQIQELEQELETSLLIRSTRSVRLTSAGE 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 K+ V + + EL + + +G LRI L +EF L+P I+ Sbjct: 68 KILTKMQGVNASILQLEKELDHTKSEVTGALRITAPTIFSHRFLINICREFQALHPQIEF 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + D++ D AIR +++ ++L++ A+P YL+ P + Sbjct: 128 DLDIGYTREDLTKSNFDLAIRATNS-PPENMVAKRLMSYQHICCASPAYLEQNGRPQHPE 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN ++ L D N +D + +N L +++ G G+ + Sbjct: 187 DLKQHNCLSDPHLTHWSFSDGNNTIVIDTD------GDMFINDNLLLLEAAKQGKGVIKM 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY+V+ DN L+RI++ +Y YP L+ + KL AF F+ Sbjct: 241 PDYLVQPAIDNGELIRILDGYFIVESGIYLIYPPELRGSTKLSAFTEFV 289 >gi|89093632|ref|ZP_01166579.1| transcriptional regulator [Oceanospirillum sp. MED92] gi|89082028|gb|EAR61253.1| transcriptional regulator [Oceanospirillum sp. MED92] Length = 296 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 15/294 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + + +F V SFT AAE+L + +S+ISR+I+ LE E+G++L R R L++T + Sbjct: 1 MNLNDVHLFIQVIEHNSFTSAAEKLGIQKSTISRRIAQLEDELGVRLLNRTTRKLSMTNE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + +LE + + +P G+LRI +LG ++ + F+ YP I Sbjct: 61 GEDLFKRCRPLLEELENVEHSVTSRQSEPKGRLRITMPPELGIFIMNDAVSSFIKRYPQI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI + L + +D+ + D A+R+ + SSLI RK+ H H YA+ YL EP + Sbjct: 121 QIDIELSVRVVDLVEEGIDLALRV-GDLSDSSLIARKISDAHAHLYASQDYLDKYGEPET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H I I D+ NW +P+ P ++ N+ + G Sbjct: 180 PDDLINHQCIG----IKLNSTDWVFENW--NDGKPV--PVNFRIRANNLTFCKDMLLNGL 231 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P+ ++ + +I+ + TP+ ++ YP K++ F + I Sbjct: 232 GIGRIPNGFFEEELKTGEVKQILTEYRTPTVGIHALYPSRRHLNPKVRLFIDHI 285 >gi|330818692|ref|YP_004362397.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327371085|gb|AEA62441.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 352 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + YP + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRYPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 126 TLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEQHGVPTHPEHL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG GIA+ Sbjct: 186 MEHPSLSLPS------EYWGDERVFTGPDGEVRVRPTNVIVANNTEMLRQFALLGMGIAM 239 Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGGDTARGKLVRLLPDYRLPQVEINVAYPSRRHLPAKVRTF 285 >gi|269104823|ref|ZP_06157519.1| transcriptional regulators LysR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268161463|gb|EEZ39960.1| transcriptional regulators LysR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 300 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 1/190 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V ++GSF+ +L+ SQ++IS++++ LE E+G+KL R++R L LT G++ Sbjct: 7 MRAFVRVVQTGSFSATGRELNTSQTAISKKVAALEKEIGVKLLTRNSRELALTPSGTEYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + +E P G LRI+ I + +L L EF LYP+I I L+ Sbjct: 67 NKCVAILGEIDEAEASAREDVAVPKGVLRISAPIAFSRLVLASLLSEFNSLYPEISIDLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D AIR R ++ S+LI R L + +A+P YL P ++L Sbjct: 127 ASDQHVDLISSGVDVAIRARN-LEDSTLIARHLFDNVLMLFASPDYLAKNGTPNKPEDLL 185 Query: 188 KHNLITFGDL 197 HN + + L Sbjct: 186 DHNCLVYSRL 195 >gi|126732239|ref|ZP_01748040.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] gi|126707321|gb|EBA06386.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] Length = 298 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 9/285 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW++ R F V A GS + AA L ++Q ++ RQ++ LE E+G+ LF R RGL LT Sbjct: 6 VTFDWNRARAFLVTAEEGSLSAAARALGMTQPTLGRQVTALEEELGVVLFERVGRGLVLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G++L + + + SG + IA LL LK + P Sbjct: 66 ESGTRLVEHVRAMGEAAVAVSLAATGQATDVSGPVAIAAPELYAMWLLPPVLKRLAEVAP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++++ N+ D+ AD AIR P Q LI ++L + +P Y + E Sbjct: 126 GIRVEVVSSNRMSDLKRREADIAIRNAAPDQ-PDLIGKRLTDDTAGLFCSPDYAASLGEV 184 Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ELDK I F + P +A D G L+ S+ + G Sbjct: 185 RGPAELDKARFIGFEENAPFVAALTQRGVAVTDTSFG------LRTTSHAVHWEVARQGL 238 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GI + P + +P LV+++ +V T + V+ LK + +++ Sbjct: 239 GIGIGPVTLGSGDPLLVQVLPEV-TFDYPVWLVAHRELKTSPRVR 282 >gi|116050005|ref|YP_791182.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891987|ref|YP_002440854.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|115585226|gb|ABJ11241.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] gi|218772213|emb|CAW27992.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 300 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 1/195 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + +++ VA + SFT AA L L+QS +SR I LE E+G++L +R R ++LT Sbjct: 1 MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + +LE + L + PSG L+I T LG+ ++ L+E YP + Sbjct: 61 GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI+ + ++ +D++ + D A+RL + + LI R L + A+P YL++ P Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTPER 179 Query: 183 IQELDKHNLITFGDL 197 +++L HN T DL Sbjct: 180 LEQLAGHNCPTVRDL 194 >gi|288960878|ref|YP_003451217.1| uncharacterized HTH-type transcriptional regulator [Azospirillum sp. B510] gi|288913186|dbj|BAI74673.1| uncharacterized HTH-type transcriptional regulator [Azospirillum sp. B510] Length = 314 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 11/288 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD LR VAR GS + AA L ++ S++ R+++ LE +G +LF + G LT G Sbjct: 6 NWDDLRYLLAVARHGSLSAAARALGVNHSTVLRRVTALEQAMGARLFDKLPGGYVLTTAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ RV ++ L L S + SG LR+ T L +L ++ F +PD++ Sbjct: 66 DEMQRVAQKMEEDLAAANRLLSGSDTRISGSLRVTTLDILTLYILPRHIAAFRRRHPDLR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+ + ++ AD AIR +L+ R + + AY A YL+ + I Sbjct: 126 IDLVAAEASLSLTRREADVAIRATTS-PPENLVGRAVSGLAFAAYGAVAYLERTGD---I 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 L++H + + + N +R + P S +VNS ++ G G+ Sbjct: 182 GGLERHPWVG----LDESFAHTNLAHWTERTV--PAASVRYRVNSVAGAVEAVRAGIGLG 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP +V +P RI + + ++ E L++ G+++AF +F+ Sbjct: 236 LLPCGVVDGDPAFRRIGDPIPEADTKLWLLTHEDLRHMGRVRAFLDFM 283 >gi|209516608|ref|ZP_03265461.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209502883|gb|EEA02886.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 302 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 20/272 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ +RVF + R GS + AA L ++ ++ISR++ LE +G KL R G LT Sbjct: 9 LDWEDVRVFVALVRYGSLSAAARALTVTHATISRRVQSLEKSLGAKLVERRPNGYVLTPA 68 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+++ V E+ ++ +++ + P G +R+ L Q L L +L+P + Sbjct: 69 GTEILSVAREM--EVSASKLMRGGADDTPRGLVRVNAPPSLAQGFLAEPLAALTVLHPSL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREP 180 I L D + + + AD A+R + + S +I + LVT YA+ +LK EP Sbjct: 127 DIDLSSDFRAVGLERREADIAVRFGQ-AKDSDVIAKLLVTAGFGFYASAQWLKRIEAGEP 185 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239 + D+ N + + WLA PR + + NS+++ G+ Sbjct: 186 PTFVGFDEAN---------ASLPEAAWLAQE-----FPRARTAFRGNSHMTQAAAARSGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271 G+ALLPD++ + L++ M + PS ++ Sbjct: 232 GVALLPDFVGRHGDGLIKCMLEHTAPSRELWL 263 >gi|91778619|ref|YP_553827.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691279|gb|ABE34477.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 313 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 147/294 (50%), Gaps = 11/294 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LRVF VAR SF+ AAE L +S + +S++I+ LET +G +L +R R + +TE Sbjct: 6 SPDLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +++ ++ ++ ++ + P GKLRI+++ G+ + L F YP Sbjct: 66 AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSGRYPQ 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D++ + D +R+ I + LI R+L + H A+P YL+ P Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPGYLERHGAPR 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + +L H + I + F W TV +++ L N +++ + G Sbjct: 185 QLADLSSHACLA----IKERDHPFGLWRLTVRGETASIKVTGPLSTNHGEVAVEWALAGR 240 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + V+ ++ L +++ +V P+ ++ YP L + K++ +F+ Sbjct: 241 GIVLRSMWDVRPLLESGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFL 293 >gi|330957610|gb|EGH57870.1| LysR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 302 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 139/285 (48%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AAE+L+L+ S++S+ ++ LE +G++LF R R L LTE+G+ + Sbjct: 10 IETFVAVANAGSFTAAAERLNLTNSALSKSVARLENRLGMRLFERTTRSLALTEEGAAYY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + +LE + L +P+G+LRI G+ + + EF +P ++ ++ Sbjct: 70 VVCTRMLAELEDAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILEFAGQHPKLRPRVT 129 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ D D A+R+ + + + R L T + AAP YL P + ++L Sbjct: 130 FTDRFVDLLEDGIDLAVRIGGSQVWPAGVAHRYLGTERVIFCAAPAYLHRHGTPETFEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS--GIALL 244 H I FG WL D+ E R ++ Q + S GIA L Sbjct: 190 ADHACILFGR---GDGSSSPWLFVDDQGQAEARAVEARLVIGNGEAQVAAVKSAWGIAQL 246 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++KD LV I+ + T ++ +P + ++ K++A Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRSRESLPKVQAL 291 >gi|307728138|ref|YP_003905362.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307582673|gb|ADN56071.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 367 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA L +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASALDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ + + N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|107101483|ref|ZP_01365401.1| hypothetical protein PaerPA_01002526 [Pseudomonas aeruginosa PACS2] gi|254240489|ref|ZP_04933811.1| hypothetical protein PA2G_01141 [Pseudomonas aeruginosa 2192] gi|126193867|gb|EAZ57930.1| hypothetical protein PA2G_01141 [Pseudomonas aeruginosa 2192] Length = 300 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 1/195 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + +++ VA + SFT AA L L+QS +SR I LE E+G++L +R R ++LT Sbjct: 1 MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + +LE + L + PSG L+I T LG+ ++ L+E YP + Sbjct: 61 GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI+ + ++ +D++ + D A+RL + + LI R L + A+P YL+ P Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRGHGTPER 179 Query: 183 IQELDKHNLITFGDL 197 +++L HN T DL Sbjct: 180 LEQLAGHNCPTVRDL 194 >gi|254523576|ref|ZP_05135631.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219721167|gb|EED39692.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 285 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 24/294 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA GSFT AAEQL +S + + I LE +G L R+ R LTE GS Sbjct: 1 MQAFVAVAERGSFTCAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAGSAYL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +++ + ++ V+P G LR++ G +L +L L P + I+L Sbjct: 61 AGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPSTWGSCVLAPHLAALLRAQPQLNIELD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ D D AIR+ P+ S ++ R L M AAP YL+ P + +L Sbjct: 121 LSNRRVDLIEDGFDVAIRV-GPLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTPADLQ 179 Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H+ C+ W LA ++ E R++C N +++ + V G+G Sbjct: 180 EHD----------CLSHLAWRGGHGWQLANGEQVDWEARLTC---NDGVALREAAVAGAG 226 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + L P ++ L ++ D + ++ Y + +L+ F +F+ Sbjct: 227 LVLQPTALLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVM 280 >gi|194291232|ref|YP_002007139.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193225067|emb|CAQ71078.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 313 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V GSF AA+QL +S + ++R ++ LE+ +G +L R R L+LT+ G Sbjct: 6 SMRVFSKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + + S SG LR+ T + G +LL L F LYPD+ + Sbjct: 66 LQRCQQILEDVEEAESVVTARSQSLSGTLRLVTPVMFGLHLLPELLSRFQQLYPDVVFDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 IL ++++DI + D A+ L S L+ R L++ + A+P Y+ EL Sbjct: 126 ILSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLLSAEVILCASPGYVAAHAPIRHAHEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIA 242 H I +P ++ L P GE R L N+ L+ Q + G+A Sbjct: 186 SHHRCIAMR--LPNAEHEWTLLG----PEGEVTVPIRPGLLCSNAELA-HQAALADMGVA 238 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +L Y+ + N + LVR++ P V YP K++AF +F+ Sbjct: 239 MLSSYLARPNIDAGRLVRVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLL 290 >gi|83644160|ref|YP_432595.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632203|gb|ABC28170.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 329 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++++++ V +GS T AA+ L +++S++SR+++ LE +G++L R R LTLTE G Sbjct: 4 FEEMQIYAKVVETGSITRAAQVLDIAKSAVSRRLADLEARLGVQLLVRTTRKLTLTETGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L + + SGKL+IA G L +F+ ++P++ Sbjct: 64 SYYERCLRLLEDLAELEESVTSEHKSLSGKLKIAAPFTFGMMHLGCVFNDFMQMHPNLNF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + +++ +DI + D AIR+ + + S+LI R + IH A+P YL+ EP + + Sbjct: 124 DINFNDRQVDIVQEGYDLAIRIGR-LVDSTLIARPICKIHTVICASPAYLEKFGEPKTPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +H +I + +L +N + P LQ N+ + Q V G GI Sbjct: 183 ELTQHRVIHYSNLPNSIWRFWNSKSECIEVNVNP---WLQANAGDYLRQAAVNGYGIVTQ 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P++I+ + L I+ D Y YP + +++ F +++ Sbjct: 240 PNFILYKEIASGALKPILTDYQLVEANAYLIYPHTRHLSHRVRTFVDYVL 289 >gi|33599427|ref|NP_886987.1| LysR family regulatory protein [Bordetella bronchiseptica RB50] gi|33567023|emb|CAE30936.1| LysR family regulatory protein [Bordetella bronchiseptica RB50] Length = 340 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 112/202 (55%), Gaps = 2/202 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L L +++++ I GLE +G++L R R ++LT G+ Sbjct: 4 FQAMQVFVRVVEANSFTRAADALVLPRTTVTTVIQGLERHLGVRLLNRTTRRISLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + ++E T+ Q+++ +P G+LR+ +G+ +L L EF YPDI++ Sbjct: 64 AYYKHATRILAEVEETEACFQDAAARPQGRLRVDVPPCIGRLVLIPALCEFHTRYPDIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR + ++ SSL+ R++ T AAP YL P ++Q Sbjct: 124 VIGMGDRRVDLVQEAVDCVIRSGE-LEDSSLVARRIGTFQTLTCAAPSYLARKGMPHTLQ 182 Query: 185 ELDKHNLITFGDLIPK-CMEDF 205 L +H + + + C DF Sbjct: 183 ALAEHQAVHYFSATGRNCSWDF 204 >gi|90422373|ref|YP_530743.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104387|gb|ABD86424.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 313 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 143/292 (48%), Gaps = 9/292 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L +F+ V + S + AA +L + +S+ISR+I LE + G LF + R LT T+ Sbjct: 5 LDLNALLLFFEVTNARSISAAAAKLGIPKSTISRKIQFLEDQTGATLFRKGCRKLTTTDI 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + ++E + + G LR++ +D G L + F + YPDI Sbjct: 65 GQTLYEHCERIAAEIEEAGLGTARMQTELRGTLRVSMPVDFGIGWLSSAIAAFAVTYPDI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + +++ +D++++ D A++L P+ + R L +I YA+P +L+ PL+ Sbjct: 125 HLVIDANSRWVDVTVEPYDVAVQL-GPLPQTQGGTRPLASITRGVYASPEFLRRAGSPLN 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GI 241 I + + + + + + +F RI+ +++ I + V+G G+ Sbjct: 184 IDDFGRFDCVVTEHQRAEGVWNFRSAQGAKVINVAGRITV----NHIGIARELVIGGVGL 239 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP+ + +++ L R++ D +P+ V +P K + +L+ F +F+ Sbjct: 240 GILPNIMCQNDVRAKRLSRVLTDWESPALQVSATFPGKRKESRRLRTFLDFL 291 >gi|71066227|ref|YP_264954.1| LysR family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039212|gb|AAZ19520.1| transcriptional regulator, LysR family [Psychrobacter arcticus 273-4] Length = 288 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 10/256 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VA SFT AA +L +S + +SRQ++ LE + KL YR R ++LTE+G Sbjct: 3 WDGISEFVYVAELESFTKAAAKLAISTAQVSRQVTALEERLNTKLLYRTTRKVSLTEEGR 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + KP G++ + + G+ L + +F++ Y DI++ Sbjct: 63 VFYQHCRSILDGLDAAEQAVSNLQSKPQGRINLTAPVTYGEQQLLPLVNDFMVQYSDIEV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ ID+ D AIR+ K + S+++ +KL AAP Y K P ++ Sbjct: 123 TAFLSNQKIDLIEGGYDLAIRIGK-LSDSTMMAKKLSHRTNFVCAAPTYFKKYGRPKTLD 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL +++ + G L D+ W + R+S ++ NS S++ + G GI Sbjct: 182 ELSQYSCL-LGTL------DY-WHFKEEDTERNIRVSGKIRYNSGYSLVDAALKGLGIVQ 233 Query: 244 LPDYIVKDNPNLVRIM 259 LPDY V+ + R+M Sbjct: 234 LPDYYVQKHLVTGRLM 249 >gi|317491096|ref|ZP_07949532.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920643|gb|EFV41966.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 297 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 10/289 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA +L +SQS++S I GLE + I+L R R + TE G Sbjct: 5 NFNDLISFLVVARERSFTKAAAKLGVSQSALSHSIRGLEERLDIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 KL + ++E+ L++ P+G +RI ++L LK FL YPDI Sbjct: 65 EKLATSLEPRFAEIESELDALRDMRDTPAGNIRITAGEHAVDSVLWPVLKPFLASYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++++DN DI D IRL + + + R + M +P Y + P + Sbjct: 125 VEIVVDNTLTDIVSGRFDAGIRLGEQVAKDMIAVRIGPDMSMAVVGSPSYFEQYGTPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 Q+L H I +P + W ++ E R+ L NS + LG G Sbjct: 185 QDLQNHRCINM--RLPTMGGLYAW--EFEKEGQELRVRVDGQLIFNSLRQRIDAANLGFG 240 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 IA +P+ VK+ + LV+++++ Y YP ++T F Sbjct: 241 IAYVPEDSVKNELADGRLVQVLKEWCNTFPGYYLYYPSRKQHTTAFSLF 289 >gi|270158678|ref|ZP_06187335.1| LysR family transcriptional regulator [Legionella longbeachae D-4968] gi|289166511|ref|YP_003456649.1| transcriptional regulators, LysR family [Legionella longbeachae NSW150] gi|269990703|gb|EEZ96957.1| LysR family transcriptional regulator [Legionella longbeachae D-4968] gi|288859684|emb|CBJ13654.1| putative transcriptional regulators, LysR family [Legionella longbeachae NSW150] Length = 304 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 132/275 (48%), Gaps = 20/275 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +F V + G F+HAA L LS +SR+I+ LE+++G+ L R R L LT +G Sbjct: 5 DDTALFVAVVQQGGFSHAARHLGLSSGLVSRRIAHLESKLGVTLLKRTTRQLHLTPEGKL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L +Q S+ KP G +RI+ G++ L L +FL + DI+I Sbjct: 65 FWQHSYRIQQELNEALSLIQSSAKKPKGLIRISAPSYFGRHYLTPLLSQFLDDFQDIKID 124 Query: 126 LILDNKDIDISMDYADCAIRL------RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 L+LDN+ +D+ + D IR ++ SSL R + + YA+ YL E Sbjct: 125 LVLDNQKLDLVKEQLDLVIRGAGYMDNETMLKDSSLQMRLITKEKICLYASTEYLLKHGE 184 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYC 235 P I EL H +I+ +L E +N+ T D G EP+ +C ++S L C Sbjct: 185 PKLIDELLNHRIISCMNLNHINQEKWNY--TYDNKHGSVTFEPQFNCNDIDSALIA---C 239 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270 V G GI D+ K + + + + P T Y Sbjct: 240 VNGCGIGKFTDFNAK-----IALQQGQLRPILTKY 269 >gi|149909493|ref|ZP_01898147.1| transcriptional regulator, LysR family [Moritella sp. PE36] gi|149807398|gb|EDM67349.1| transcriptional regulator, LysR family [Moritella sp. PE36] Length = 294 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 10/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V +GS + A+ + SSISRQ++ LE E+GI+L R R + LTE GS Sbjct: 6 RLHYFNCVVETGSISAASRVFDVQPSSISRQLAALEAELGIRLLNRTTRNIGLTEAGSTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + +L+ + + P G L+I+ T+ G+ + + F+ YPD+ I+L Sbjct: 66 YYYSQRIVAELDEANRAVNDLQQSPKGNLKISMTVGFGEACVLPLVPGFMKAYPDVNIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ D D AIR + + S+LI KL A P YL + P + +L Sbjct: 126 ELSERVVDLVEDNVDIAIRSGR-LPDSNLIASKLADNDFLLCATPQYLADNGTPETPDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 N I +G + +W D+P L VNS Q + +G+ L Sbjct: 185 INFNCICYGYSGWR-----DWFLMDDKPRKLAITEGLIVNSVNGQKQLVLNHAGLVLAAR 239 Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V + N R+++ + SF+ Y E L +T L R+ I K R Sbjct: 240 WAVNNELNNGRLVQVLAQHSFSPY----ERLSSTYALYLKRDLISPKIR 284 >gi|254470959|ref|ZP_05084362.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211960101|gb|EEA95298.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 296 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 141/291 (48%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V S T A+ + L SSISRQI+ LE E+G++L R+ R ++ TE G + Sbjct: 4 RIAYFNAVMEEQSITEASRRFDLQPSSISRQIASLEEELGVRLLNRNTRKVSPTEAGLRF 63 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ L+ + + + +P G L I++T+ G+ ++ + F+ YP ++I++ Sbjct: 64 YSYSRQILSDLDEAKRAISDLQQEPQGTLTISSTVGFGETVILPLVPAFMSEYPKLKIKV 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ + D AIR + SSLI R L+ + A+P YLK P + Q+L Sbjct: 124 ELTERVVDLIEEGVDVAIR-SGSLADSSLIARHLLPNNFIICASPTYLKQAGTPETPQDL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 KH I +G NW D+ L+ NS Q + G+AL+P Sbjct: 183 TKHRAIKYG-----YAGWANWFQISDKIERLTLSDTLETNSVNGQKQLILNHGGLALIPH 237 Query: 247 YIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKN---TGKLKAFRNFI 290 + V+ LV+++ D+ +P Y LK + K+K F ++I Sbjct: 238 WAVRRELATGELVQVLPDLTFSPHGQQTSTYAIYLKRELISPKIKVFMDYI 288 >gi|167736554|ref|ZP_02409328.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] Length = 340 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LR+ + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|187924466|ref|YP_001896108.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715660|gb|ACD16884.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 300 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 135/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 66 LEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P S+ +L Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPHSLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 HN + G + W+ + ++S ++ + + ++C+ G G+A Sbjct: 185 AHHNCLALG---ASANQQRGWMFQQGDKVVSIKVSGTMECSDGAVLHEWCLEGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|121593441|ref|YP_985337.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120605521|gb|ABM41261.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 304 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G+FT AA+ L L + ++++ + LE + +KL R R +T+T G+ + Sbjct: 7 MRIFARVVEAGTFTRAADSLQLPKGTVTKHVQALEERLRVKLLNRTTRRVTVTADGAAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + + + + + P G+LR+ + + L+ N +F YP+IQ+ L Sbjct: 67 DRTVRLLADFDDIEASMSQERANPRGRLRVDVGSSVARLLIVPNPAQFQERYPNIQMDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ + AAP YL+ P +L+ Sbjct: 127 VSDRTVDLIGDNVDCVIRGGE-LADQSLVARRIGNLEFITVAAPAYLERFGVPAHPLDLE 185 Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + +I F + + +F V G ++ + N+YL+ + V G G+ + Sbjct: 186 RSHRTVIYFSPVSARRYPLEFRKDGEVIETSGPSHLAVNESNAYLNAL---VAGQGVGQI 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + + LVR++ D P VY YP + K++AF Sbjct: 243 TTFQAQQHFERGELVRVLPDWSHPLLPVYVVYPPNRHLSAKVRAF 287 >gi|88859488|ref|ZP_01134128.1| transcriptional regulator lysR family protein [Pseudoalteromonas tunicata D2] gi|88818505|gb|EAR28320.1| transcriptional regulator lysR family protein [Pseudoalteromonas tunicata D2] Length = 296 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 133/284 (46%), Gaps = 11/284 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V + GS + AA L +Q ++ R I+ LE + I LF R GLT TE + Sbjct: 7 WELYRSFLRVMQEGSLSAAARALGSTQPTVGRHIAQLERALNITLFIRAQGGLTPTEAAN 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L +E+ E + G +RI T+ +G +L E + L+P I + Sbjct: 67 ALLLPATEMASLAEAMERVACSQGDGIQGTVRITTSDVIGTEILPTIFAEMVKLFPKITL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L +K D+ AD AIRL +P Q + LI R++ I + +A YLK P ++ Sbjct: 127 ELVLSDKAQDLLNREADIAIRLFRPTQ-TQLIARRIGNIDVGFFAHKEYLKTQGTPTTLA 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGI 241 +L++H LI F + N++ T ++ + + C + +S ++ + G+GI Sbjct: 186 DLNEHRLIGFDKVT-------NYIRTAEKTLPFSVDKNNFCFRTDSNVAQLALIRAGAGI 238 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + + NLVR++ D + E L+ + KA Sbjct: 239 GICQVGLASQDKNLVRLLSDDFNFEMDTWVTMHEDLRKSPACKA 282 >gi|70730282|ref|YP_260021.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344581|gb|AAY92187.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 302 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 12/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + L+VF V +SGS A E+L LS S++ + ++ LE +G++L R R ++LT++G Sbjct: 3 NLNGLQVFVSVVQSGSLVGAGERLGLSASAVGKALARLEQRLGVRLLNRSTRRISLTDEG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + +++ + EL S KP G+LR++ +G +L L EF YPDI+ Sbjct: 63 ALFYERGQRIVAEVQEAEAELARISDKPRGRLRVSLPA-IGYRMLLPILPEFSARYPDIE 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L +++ ID+ + D IR + + S L R L AP Y P + Sbjct: 122 LDLDFNDRLIDVIAEGVDAVIRSGE-LPDSQLKSRNLGPFGFVLVGAPGYFARRGTPRTP 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 ++L++H + + P W ++ P G P + S L N+ S++ G G Sbjct: 181 RDLEQHACLRYK--FPGGSLLQQW--SLRLPDGAPPLVLGSALTSNNLESLIHASTQGLG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA +P+++V + +LV +++D +P + KL+ F +F+ Sbjct: 237 IAYVPEFVVCGALADGSLVAVLDDYQQERGKFSILWPSSRHLLPKLRVFVDFL 289 >gi|167585072|ref|ZP_02377460.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 349 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTEQFPKVVPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEHL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ V N+ + Q+ +LG G+A+ Sbjct: 186 AEHPGLSLPS------EYWGDDRVFTGPDGEVRVRPTNVVVANNTAMLRQFALLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|262404307|ref|ZP_06080862.1| transcriptional regulator LysR family [Vibrio sp. RC586] gi|262349339|gb|EEY98477.1| transcriptional regulator LysR family [Vibrio sp. RC586] Length = 297 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ +F V GSFT A E L +++S +S QI+ LE + ++L R R ++LT +G Sbjct: 4 ELKRIAIFNKVVECGSFTSAGESLGMTKSKVSEQITTLEKNLNVRLLNRTTRKVSLTTEG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + E + + + SG +RI TTID+G LL L+EF LYP ++ Sbjct: 64 GTFYQYSHGLLGMAEEALYSVNHLASEVSGIIRIGTTIDVGTFLLAPLLEEFYQLYPQVK 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L L++ D D IR+ + + SSSL+ R + + YA+ YL I Sbjct: 124 FDLQLEDGLQDFVESNLDIVIRMGE-LTSSSLVGRVIAPFEIGLYASQSYLDKSPPLEKI 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGS 239 ++L H+ I L C+ N T+ P GE L+ N+ L++M G Sbjct: 183 EDLQHHDWIYLTRL---CLP--NHTMTLVNPEGERHDVKLEPQHISNAPLAVMAMVQQGL 237 Query: 240 GIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GI + +++ P LVR+ D S T+ YP +++ F +++ R Sbjct: 238 GIGAIAHFLINKVPGPALVRLFPDFYQLSTTMNILYPSRKNLPPRVRLFIDYLVESLR 295 >gi|167725586|ref|ZP_02408822.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] Length = 331 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LR+ + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|167616306|ref|ZP_02384941.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 299 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 16/291 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + + P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLADHVATVVAKPDDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNEVD-PSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ + G GIA Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP + + L R++ D P +Y Y + ++A +F+ Sbjct: 237 LLPTFAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRRQMPLAMRAMIDFL 287 >gi|237811080|ref|YP_002895531.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|237503088|gb|ACQ95406.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] Length = 294 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ L +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + P+ + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPQ--SMICNNVETRVCFALRGRGLACVPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + L +++ I T + +P + KL+AF +FI Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288 >gi|33595145|ref|NP_882788.1| LysR family regulatory protein [Bordetella parapertussis 12822] gi|33565222|emb|CAE36020.1| LysR family regulatory protein [Bordetella parapertussis] Length = 340 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 112/202 (55%), Gaps = 2/202 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L L +++++ I GLE +G++L R R ++LT G+ Sbjct: 4 FQAMQVFVRVVEANSFTRAADALVLPRTTVTTVIQGLERHLGVRLLNRTTRRISLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + ++E T+ Q+++ +P G+LR+ +G+ +L L EF YPDI++ Sbjct: 64 AYYKHATRILAEVEETEACFQDAAARPQGRLRVDVPPCIGRLVLIPALCEFHTRYPDIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR + ++ SSL+ R++ T AAP YL P ++Q Sbjct: 124 VIGMGDRRVDLVQEAVDCVIRSGE-LEDSSLVARRIGTFQTLTCAAPSYLARKGMPHTLQ 182 Query: 185 ELDKHNLITFGDLIPK-CMEDF 205 L +H + + + C DF Sbjct: 183 ALAEHQAVHYFSATGRNCSWDF 204 >gi|17548668|ref|NP_522008.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430916|emb|CAD17598.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 292 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AA+ L + S++SR+I LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVKARGFRGAAQALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGLI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E +PSG LR + +D L + EF LYP I Sbjct: 65 YFERCKRIVDEARLAHEQLGELLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYPGINFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ +P ++S LI R L ++ + YA+P YL+ EP + + Sbjct: 125 FDLTPRQVDLVSEPFDVAIRMGEP-ENSQLIARPLASLQANLYASPGYLERSGEPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + G L TV P+G +NS I + L GI L+P Sbjct: 184 LGQHECL--GMLKVGSWTLHEGAHTVTTPVG----GRFMLNSVGMIRRLATLDLGIILVP 237 Query: 246 DYIVKDN 252 + IV D+ Sbjct: 238 EEIVADD 244 >gi|227819830|ref|YP_002823801.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338829|gb|ACP23048.1| putative LysR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 299 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 136/290 (46%), Gaps = 8/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +RVF VA+ SFT AA QL ++ +++R +S LE +G++L R R ++LT G Sbjct: 3 DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRAVSALEESLGVQLLLRTTRQVSLTSAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + +L+E +G +RI + +GQ +L + F +P + Sbjct: 63 AVYAARVEPLIRQFDQVREDLREEHGDVAGLIRINAPLSIGQQILPDIVSGFRAEFPRVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L ++ IDI + D A+R+ +P + S I RK+ + A+P +L P Sbjct: 123 VSLSLTDRFIDIVSERFDLALRVSEPPRDKSTIWRKVCRVRRILVASPGHLAAFGTPEMP 182 Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H I + + I + E N T G+ L N+ I + G G+A Sbjct: 183 DDLHRHACIAYDEEAIAESWELTNGGRTRKALAGK----VLAANNGELIARLAEDGQGVA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP +IV D L +++ + P + YP K ++ F +F Sbjct: 239 LLPHFIVDDALSRGTLKQVLAEWEPPELWLTLYYPPYEKLPMRVARFSDF 288 >gi|194367110|ref|YP_002029720.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349914|gb|ACF53037.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 301 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 15/294 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ R+F V S SFT AA+QL L +S++S I+ LE +G +L R R ++ T G Sbjct: 5 DRFRIFTRVVESASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + ++E + ++ +P G L+I +G+ ++ L +F YP +++ Sbjct: 65 FHARCLRLIAEVEDAESLFRQDDAQPIGLLKIDVPSRIGRRIIAPALPDFFARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D D +R+ + SSL+ R L + AAP YL+ P + Sbjct: 125 LGMTDRAVNLIEDGCDAVLRVGH-LGDSSLVARTLGQLDFVNVAAPSYLREHGVPQHPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + + +E + W L T +P ++VNS + + CV G G Sbjct: 184 LPQHRAVNYASPTTARVEPWEWQDGSQLRT------QPMPGWVRVNSAEASIACCVAGLG 237 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + +P Y V+ + LV +M + V P +++ F ++ Sbjct: 238 LLQIPRYDVQAELHAGALVEVMPQYVAQPLPVTLLQPHRQHRAQRVQVFIEWLL 291 >gi|148556135|ref|YP_001263717.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501325|gb|ABQ69579.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 308 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 13/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F VA GSF+ AAE L L+++++S+ IS LE + L +R R L+LTE G Sbjct: 6 DFEAWAIFAKVAEKGSFSQAAEDLGLAKTTVSKAISRLEERMRTTLLHRTTRKLSLTESG 65 Query: 64 S-KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 L R + + L+E+++ P G +R+A + G+ L L F+ YPDI Sbjct: 66 RLSLDRALRIMADGVAIEADILEEAAI-PRGLIRVACSTGFGETALAPMLPAFMAAYPDI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + + +D+ + D AI++ + SSL +L+T+ AAP ++ P Sbjct: 125 RLDITFSEQRVDLVAEGYDLAIQIGDNAEDSSLRISRLLTLRRRVTAAPSLIERHGRPRH 184 Query: 183 IQELDKHNLITFGDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L + + LIP + + ++ D P L +NS L +M + G Sbjct: 185 PSDLAHYPM-----LIPSHVPWGREVDFTGPGDEHFHVPVSGALHMNSTLGLMHALLAGV 239 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G + +P+Y + LV + D PS + P +++A F+ Sbjct: 240 GASAVPEYFTWEATRDGLLVDLFPDWTIPSSPICIVTPPGRARPARVRALLEFL 293 >gi|157963214|ref|YP_001503248.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848214|gb|ABV88713.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 304 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 139/300 (46%), Gaps = 12/300 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 SF+ + L FY VAR GSF AA++L L+ S IS+ I LET + +L R R L LTE Sbjct: 4 SFNLNLLSSFYAVARHGSFAAAADELCLTHSVISKHIKQLETSLQSQLIIRTTRALELTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL-LLYP 120 +G L+ +++++ + + E SG+L I L + EF+ L YP Sbjct: 64 EGEFLYSKCQSIFNEVLQVKDFIDEKKRVVSGRLVIKMPSILKHDDGIAKSLEFMHLTYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + ++ D+ D+ + D A R+ K ++ SS + RK+ I + A+P YLK P Sbjct: 124 GLMLDIVFDDNLGDLVKEGVDIAFRIGK-LEDSSYLCRKVRDIDTYVVASPEYLKVAGTP 182 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L EL +H + + C+ NW P L S + QY G Sbjct: 183 LHPNELTQHKCLHYS----HCLTGLNWSFKQNGEQFNVPITPALSSMSESMLAQYACKGF 238 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+ D++ ++ LV +++D T +Y +P A K ++F N I L RD Sbjct: 239 GVTTTLDFVTAKDIESARLVSLLKD-FTWKTELYLVFPYAAVVPLKTRSFINSI-LSTRD 296 >gi|17549367|ref|NP_522707.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431620|emb|CAD18297.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 298 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 15/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF GSF+ AAE L +S + + + G+E +G++L R R +LT+ G + Sbjct: 7 MAVFVKAVELGSFSAAAEVLQMSSQLVGKHVQGIEQRLGVRLLNRTTRRQSLTDFGRAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E + +E+ P+GKLRI + G + L L E++ YP++++++ Sbjct: 67 ERSKIILAEVEIAESLAEETRAVPTGKLRINAPVSFGMHTLAQRLPEYMKRYPEVEVEMT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ-EL 186 L N+ +D+ + D R+ + + S LI R L + AAP YL+ R PL+ +L Sbjct: 127 LSNRTVDLINEGYDAVFRVGE-LSDSGLIARPLAPYRLVLCAAPAYLEG-RPPLTTPWDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIAL 243 +HN + F + NW T D P G P S L V+ ++ + G G+ L Sbjct: 185 RQHNCLGFAYTELRT----NW--TFDGPDGRVVVPVSSRLMVDHGEPLLCAALAGMGVLL 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 P +V+ + +LV ++ + ++ Y + T KL++F +F L Sbjct: 239 QPLELVRSALADGSLVGVLPQYEPLTRPMHVLYAPDRRVTPKLRSFLDFAVL 290 >gi|254224675|ref|ZP_04918291.1| transcriptional regulator, LysR family [Vibrio cholerae V51] gi|125622738|gb|EAZ51056.1| transcriptional regulator, LysR family [Vibrio cholerae V51] Length = 301 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DLSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|322836467|ref|YP_004215844.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321171020|gb|ADW76717.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 300 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 10/289 (3%) Query: 5 WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +++L AR+G S+T AA L +S S+IS+ I LE +G+ LF R R L LT Sbjct: 7 FERLTGLIAFARAGALGSYTAAARSLTVSPSAISKSIQRLENHLGVTLFARTTRSLVLTA 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +LH ++ E + + +P+G LRI+ + +G +++ + +F +YP+ Sbjct: 67 EGRELHERVLQLLQVAEDIEQLAKRKRAEPAGTLRISASYPIGLHMIAPVIPQFCTIYPN 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++I L L ++ + + + D A+RL + S+L+ R+L + M YA+P YL C P Sbjct: 127 VKIDLRLSDRVLSLVDENIDIAVRL-GDLADSNLLSRRLSSYRMGCYASPEYLAQCAPPK 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H + + F W V R I S + V++ ++ V G+G Sbjct: 186 HPNDLMGHKTVNL--RYQNTGQLFRWPFQVGGREIEILPSSNVVVDASEVVLASIVAGTG 243 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I + ++ N LV ++ D + + E+ ++ ++AF Sbjct: 244 IGMATSFMADSWVKNEKLVPLLTDFTVERHNISALWHESRRSNPAVRAF 292 >gi|187924123|ref|YP_001895765.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715317|gb|ACD16541.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 298 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 128/278 (46%), Gaps = 13/278 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F VA +GSF AAEQL +S S ++R +S LE +GI+LF R R + LTE G+ Sbjct: 5 FQAMQAFVKVADAGSFAQAAEQLGVSTSVVTRHVSSLEKHLGIRLFQRTTRKVVLTEAGA 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE + +S + +G LRI L E+ +P + + Sbjct: 65 EYGDGCRLLMAELEEVESRATTASKEVAGDLRIVALGSFSLFRLTPLFAEYQAKFPRVNL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L K +D+ D I I+S SL+ R+L+ H A+ YL P + Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLINSHAVPVASAAYLAQAGHPKTPA 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L +H +IT P W+ + GE I + VNS + Q + GI Sbjct: 185 DLARHRVIT----APLDTSPQTWVFD-NGDGGEDSIALDASFTVNSMIMQKQAALGAMGI 239 Query: 242 ALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYP 274 ALLP +V D L+RI+ED V+ V YP Sbjct: 240 ALLPLEMVDDELRAGTLMRILEDHAVLNGDVAVSLVYP 277 >gi|146339476|ref|YP_001204524.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192282|emb|CAL76287.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 406 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 139/311 (44%), Gaps = 47/311 (15%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD R+F V R+GSF AAE+L LS +++ R+I E ++G LF R G LT++G Sbjct: 82 DWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFERQIGATLFTRDVHGARLTDEG 141 Query: 64 SKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + V S V ++E EL + + SG++R+A T LG L L EF + Sbjct: 142 AL---VVSAV-ERMEAASFELLRAGDGLASAASGEVRVAVTEGLGTFWLAPRLVEFQQNF 197 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P++ + L + D+S AD AI L +P + R L +H+ +A+ YL+ Sbjct: 198 PNVNVDLYCAMRSADVSRHEADVAIHLSRPAALDVKLVR-LGRMHLMCFASEKYLETYGV 256 Query: 180 PLSIQELDKHNLI-----------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228 P SI EL KH L+ F + P G + + + + Sbjct: 257 PKSIDELVKHRLVLQVADEAAANTAFATIFP----------------GYEQRDLIAMTTN 300 Query: 229 LSIMQYCVL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +S Y + G+GI + P Y +V + D + S+ ++ Y TG++ Sbjct: 301 VSSANYWAVAHGAGIGVFPTYASALGGKIVPLEVD-LKWSYDIWLSY---HATTGRIPRV 356 Query: 287 RNFIFLKARDW 297 R+ I DW Sbjct: 357 RHMI-----DW 362 >gi|86139527|ref|ZP_01058095.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] gi|85823710|gb|EAQ43917.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] Length = 323 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 27/297 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R F A++GSFT AA+Q+ +S S+ ++ LE +G++L R R + LT G Sbjct: 27 DQIRAFVATAQTGSFTAAADQMGISNRLTSKYVAELEARLGVRLLQRTTRRVGLTPAGED 86 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + E+ ESS SG LR++ I G+ + G L F +P + I+ Sbjct: 87 LLTRAPALLDDFDAVLSEVTESSKGFSGTLRVSAPITFGEIYVVGMLARFAAAHPAVSIE 146 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD+K +D++ + D RL +SL R+L A+P YL C P + +E Sbjct: 147 LRLDDKYLDLASEGLDLTFRLGH-FDQASLKVRRLGEFRSVLVASPDYLARCGTPTTPEE 205 Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRISCL----QVNSYLSIMQYC 235 L H C+ D N W+ R G I+ + VNS + + Sbjct: 206 LSNH----------ACIVDTNRRNPRRWMF---RKGGSETIAHVTGRFHVNSASAAVALA 252 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G G+A +P + ++ + +LV ++++ + S V Y E K++A +F Sbjct: 253 ISGIGLAYVPSFALRGAVKSGDLVALLDEYRSESGPVGAAYLEGRTLPRKVRALIDF 309 >gi|330960495|gb|EGH60755.1| LysR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 302 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 144/295 (48%), Gaps = 20/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + S +P G LR++ + L L +FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQSSEPRGTLRLSAPLSFAVAHLGCLLPQFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDLALRI-GVLEDSSLIARRIASIDRVYCASPGYLAARGTPQTPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238 +L +H+ + +G W R G ++S L V+ + + V G Sbjct: 183 DLHQHDCLPYGH-----SRQVQW-----RFQGAGKVSSLSVSGRMRVNNGELLRDAAVAG 232 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI LP +IV + +LVR+++D T+ YP+ + + ++ F F+ Sbjct: 233 LGITYLPTFIVGAALRDGSLVRVLDDRRPEPLTLSAVYPQHRQASRLVQVFIEFL 287 >gi|116252247|ref|YP_768085.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115256895|emb|CAK07989.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 297 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 6/284 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ +L F VA +GSFT A+ +L LSQS++S + LE +G++L R R L+LT+ G Sbjct: 5 DFSELAAFIAVAEAGSFTRASAKLGLSQSAVSYSVRMLEQRLGVRLISRTTRSLSLTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ R + +E+ + KP+G +RI T ++L + FL YPDI+ Sbjct: 65 ERMLRNLRPAFEHIESEIAAVTSLRDKPAGTIRITTFRYAAMSVLWPVMTTFLTEYPDIE 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ILD DI D IR+ + +Q + R + M +P Y +N P++ Sbjct: 125 MEVILDEGLTDIVAGRFDAGIRIGEQVQKDMVAVRIGPDLRMAVVGSPSYFQNRTIPMTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 ++L H I++ + + W D R++ L +N L + + G G+A Sbjct: 185 RDLGDHRGISYRQTTGGGL--YAWEFERDSEELVVRMNGPLIINDSLMLEAAALDGLGLA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 + V + L+R+++D P + YP ++T Sbjct: 243 YTFESQVSQYVADGRLIRVLDDWCQPFPGYHLYYPSRRQHTAAF 286 >gi|167578175|ref|ZP_02371049.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 299 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 16/291 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + + P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLADHVATVVAKPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNEVD-PSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ + G GIA Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP + + L R++ D P +Y Y + ++A +F+ Sbjct: 237 LLPTFAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRKQMPLAMRAMIDFL 287 >gi|15889748|ref|NP_355429.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157664|gb|AAK88214.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 299 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 145/292 (49%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+F+ AA L++ +++++ + LE + L R R + LT G+ + Sbjct: 7 MRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S++ ++E + + V+PSG+LR+ ++ +L EF YP I++ L Sbjct: 67 ERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQIRLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R+ ++ SLI RK+ + +A+P Y++N P ++L+ Sbjct: 127 VGDRLVDYIAENVDCALRV-GVLRDQSLIARKVGELRFETFASPSYIENFGMPREPEDLE 185 Query: 188 KHNL------ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 K + T G ++P + N + +V+ P + VN + + + G GI Sbjct: 186 KEHYSVGYLNATTGQIMPASFD--NGVRSVEL---TPNY-VVSVNDSRTYLNAALAGMGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++V+D LV ++ + + +Y YP+ T K++ F +++ Sbjct: 240 VQLPVFMVRDALSRGELVPVLSEWRREAMPIYVVYPQTRHVTNKVRVFVDWL 291 >gi|126455278|ref|YP_001065164.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|242314710|ref|ZP_04813726.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|126228920|gb|ABN92460.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|242137949|gb|EES24351.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] Length = 294 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ L +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + P+ + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPQ--SMICNNVETRVCFAIRGRGLACVPD 241 Query: 247 YIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D R+ ++ I T + +P + KL+AF +FI Sbjct: 242 FAVRDELASARLRTALDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288 >gi|167625200|ref|YP_001675494.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167355222|gb|ABZ77835.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 303 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 142/289 (49%), Gaps = 13/289 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F V +SG F+ AAE L S S +S++++ LE +G++L R R + LT +G Sbjct: 11 FDGIVIFAQVVKSGGFSAAAEVLGHSTSYVSKEVNKLEERLGVRLLNRTTRSIGLTPEGD 70 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E+ + ++ V P G LR++ + QN L+ + ++L LYP++ + Sbjct: 71 AYYQQCLQLIIDAESAVGLITQNDVSPRGVLRLSCPVGFAQNHLKPIISQYLQLYPNVSL 130 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + D+ D D AIR ++ SSLI RK+ + + A+ Y+ +P + Sbjct: 131 DLDLSDNRTDVVADGYDLAIRASAQLEESSLICRKIYSCKAYTVASKEYISRHGKPHHPR 190 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSG 240 EL+ HN I + + D+ +D + + R L N ++ + + G G Sbjct: 191 ELETHNGICYSNHKQPSRWDY-----IDHDGKHFVVDIRQKILCNNGHMQ-LSMALAGHG 244 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I LP + ++ ++ L + E+ + V+ YP + K++AF Sbjct: 245 ITRLPSFYLQGALESDQLEILFENFPSADIDVFVVYPSRKHLSPKVRAF 293 >gi|187919069|ref|YP_001888100.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717507|gb|ACD18730.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 304 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 11/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F A+E L +S +SR I+ LE + +LF R R ++LTE+G + + Sbjct: 14 VFAAVVDAGTFAAASELLGMSPPGVSRAIARLEKRLKTRLFNRTTRAVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +E + GKLRI + +L L EF+ +P+++++LI Sbjct: 74 VMPHLRGMEEAAAAAAGGAATVRGKLRINLDPVFSRIILGPKLDEFMDAHPELELELIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE--LD 187 ++ D+ MD D A+R +P +SSSLI RKL+ + AAP YL P QE L Sbjct: 134 DQLGDLVMDGFDLALRFGEP-RSSSLIARKLLDTAVVTVAAPSYLARRGRPAEPQELGLG 192 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA---- 242 H + F + P + + W + I L VN +++ C+ GSG+A Sbjct: 193 MHRCLEFRN--PDTGKPYPWEFHRKRKKIVVETNGRLTVNDPSALLNACLAGSGVAQMLL 250 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L ++++++ LV + D F +Y +P + + F +FI Sbjct: 251 LGGEHLIREG-RLVNLFPDWPDERFPLYAYHPSRHHTPARTRVFLDFI 297 >gi|71278724|ref|YP_267987.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144464|gb|AAZ24937.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 293 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 17/293 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V GSF+ AA S S IS+ ++ LE VG++L R R ++LT +G + Sbjct: 3 IFTQVVECGSFSGAAIATGHSNSYISKTLNKLEARVGVRLLNRTTRSISLTPEGQVYYEQ 62 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L +S ++P G L+I+ +N LQ + F+ YP++ + L L+ Sbjct: 63 CQQLVLDAHDAVSLLTQSHIEPKGVLKISCPTSFAENHLQEVMSAFMHQYPEVNLVLDLN 122 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D D IR + SSL+ RK+ + + A+ YLK P S ++L +H Sbjct: 123 DRHVDLVQDGFDLVIRATDKLAESSLVCRKIYSCKAYTVASHDYLKRFGLPQSPEQLSEH 182 Query: 190 NLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 I + +L + W+ T ++ + ++ C + L+++ + G GI L Sbjct: 183 QCICYSNL----KQANKWIYSHSNGTDNQVEVKAKLLCNSASMELAMV---LAGHGICRL 235 Query: 245 PDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 P +++ +DN L + D ITP+ VY YP + K++ F + + K Sbjct: 236 PAFVMEKELQDN-KLAILFNDYITPTIDVYAIYPSRKHLSPKVRCFIDLLVDK 287 >gi|52426189|ref|YP_089326.1| LysR protein [Mannheimia succiniciproducens MBEL55E] gi|52308241|gb|AAU38741.1| LysR protein [Mannheimia succiniciproducens MBEL55E] Length = 295 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 10/285 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V +SGS +HA E + S +SR+++ LE +G +L R +G++L E G + Sbjct: 14 DDMRLFVSVVQSGSLSHAGELTGIPVSRLSRRLTQLEQALGTQLLNRGKKGVSLNELGER 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + E +Q+S PSG LRI+ D+ +Q L +L P + ++ Sbjct: 74 FFEHSQQMLQQAELAIESVQKSLENPSGLLRISVAADIFYLFIQPYLATYLNENPQVNLE 133 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L N+ I++ D D AIR I + +++ R + +A+ YL EP S + Sbjct: 134 INLSNQKINMIQDGVDLAIRT-GVIDNENVVARLWKKMEFGVFASQAYLAKYSEPQSPND 192 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H++I+ +P + N V R++C N + + Q SGI +LP Sbjct: 193 LYQHHIISQMYTLPWRFQQGNQEVAV---FPHSRLTC---NDFAIVEQQLKQHSGIGILP 246 Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +L+RI+ D S V Y +N G + R+F+ Sbjct: 247 ITKNHNRSDLIRILADWQLQSVPVSLIY---YRNRGAIATVRSFV 288 >gi|167908981|ref|ZP_02496072.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] Length = 343 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LR+ + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|300896273|ref|ZP_07114817.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300359814|gb|EFJ75684.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] Length = 308 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + I S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 QEL HN + + +F+ +A + E +S + N S+++ + G+G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 246 Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|325982030|ref|YP_004294432.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212] gi|325531549|gb|ADZ26270.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212] Length = 303 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F VA +GSF AA ++++S++++S+ ++ LE ++ +LF R R L+LTE G Sbjct: 3 DLNLLIIFARVAEAGSFAEAARRMNISRAAVSKAVAKLEKDLSTRLFLRSTRHLSLTETG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + + E + + +P G L+++ + G + L FL YP I+ Sbjct: 63 TTLSEHANRILEESEHAERAINSLHAEPRGVLKVSVSSSFGTRHIAPALPCFLTRYPKIR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + + D+ + D IR+ +L+ RK+ + A P Y + P + Sbjct: 123 IDLTITDHPGDLVEEGYDVQIRVTNE-PDLNLVARKIAPVRRILCATPQYFQQWGMPKTP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240 ++L+KHN + + + F+ P G+ P L++N ++ Q + G G Sbjct: 182 EDLEKHNCLDCALSVEQGYWRFSG------PTGKIKVPISGTLRINDNDALAQAALHGLG 235 Query: 241 IALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IALLP Y + R+ + + ++ +Y CY + K++AF NF+ Sbjct: 236 IALLPTYTIGMELQKGRLQVALPEYLSVERHIYACYLPSRHLPIKIRAFINFL 288 >gi|325523613|gb|EGD01903.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 301 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRIINDMQNAESSVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPTTLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V ++ LV +++ P ++ +P+ Sbjct: 242 WWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|218703579|ref|YP_002411098.1| putative LysR-like transcriptional regulator [Escherichia coli UMN026] gi|293403416|ref|ZP_06647507.1| transcriptional regulator [Escherichia coli FVEC1412] gi|298379027|ref|ZP_06988908.1| transcriptional regulator [Escherichia coli FVEC1302] gi|218430676|emb|CAR11548.1| putative LysR-like transcriptional regulator [Escherichia coli UMN026] gi|291429269|gb|EFF02289.1| transcriptional regulator [Escherichia coli FVEC1412] gi|298280140|gb|EFI21644.1| transcriptional regulator [Escherichia coli FVEC1302] Length = 329 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 36 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 95 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 96 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155 Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + I S LI KLVT+ A+P YLK P + Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 QEL HN + + +F+ +A + E +S + N S+++ + G+G Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 267 Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 268 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323 >gi|107028770|ref|YP_625865.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690071|ref|YP_835694.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105897934|gb|ABF80892.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116648160|gb|ABK08801.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 301 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V ++ LV +++ P ++ +P+ Sbjct: 242 WWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|302188178|ref|ZP_07264851.1| LysR family transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 322 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 14/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F +GSFT AA+QL L++S++ + I LE + ++L R R L++T++G Sbjct: 7 NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDEGQI 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ V L+ + L PSG+LRI+ + LG+ + +++ L +P + + Sbjct: 67 LYERCVGVLQDLDDVEDALAFRRSTPSGRLRISLPVALGRLHVLQHIECCLNDWPSLSVD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D A+R+ P + S L+ R + M A+P YL EP + ++ Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHDEPKTPED 186 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H + F G L+P W V+ + LQ++S S+ Q + G GI Sbjct: 187 LSEHQCLHFVSGGRLLP-------WNFRVNGSSVPVTHGGRLQMDSAESLRQSAIAGLGI 239 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A LP Y+V D+ LV+++ + + YP + K++ F Sbjct: 240 ATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLF 287 >gi|260431621|ref|ZP_05785592.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] gi|260415449|gb|EEX08708.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] Length = 294 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/282 (26%), Positives = 131/282 (46%), Gaps = 6/282 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ +R F A +GS + AA +L +Q ++SRQI+ LE+++G+ LF R R L +T Sbjct: 7 FDWNHIRAFLATAETGSLSAAARRLDQTQPTLSRQIAALESDLGVMLFERVGRSLQITTA 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L T E+ + + + G++RI + + +L L+E P + Sbjct: 67 GIELLEHTREMGAAADRIALAASGQAQSIEGQVRITASDVMSAYILPDLLREIRAQAPKL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I +I N D+ AD AIR +P Q LI + + H YAA YL P S Sbjct: 127 RIDVIAANDIRDLMRREADIAIRHVRPDQ-PDLIAKLVQEADGHFYAATAYLNRAGRPKS 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +L +H I+FGD + + + + E N ++ ++ G GIA Sbjct: 186 LSDLSRHAFISFGD----TAQMIAYFEPIGLHLTEENFRLGSQNGIVA-WEFARQGFGIA 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + + + P + R++ D+ F ++ L + +++ Sbjct: 241 PMSEPVGDATPGMERVLPDMEPLRFPIWLTTHRELHTSRRIR 282 >gi|190150512|ref|YP_001969037.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915643|gb|ACE61895.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 297 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 33/307 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF +VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T Q EL+ G L+IA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTKQGELR-------GSLKIASNAAFGSTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R +++ R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLSRHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236 S QEL H + ++ K W D G+ + S L +N +++ + + Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290 GIA+LP Y ++ N L ++ D P++ VY YP + +++F +F+ Sbjct: 231 ADGGIAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEE 290 Query: 291 FLKARDW 297 F DW Sbjct: 291 FEGKGDW 297 >gi|53717758|ref|YP_106744.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|53724669|ref|YP_101978.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|67642449|ref|ZP_00441205.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|76808955|ref|YP_331757.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121599020|ref|YP_994106.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124385694|ref|YP_001028233.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126440879|ref|YP_001057199.1| transcriptional regulator [Burkholderia pseudomallei 668] gi|126449285|ref|YP_001081874.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|126451470|ref|YP_001064437.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134284075|ref|ZP_01770769.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167003299|ref|ZP_02269088.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|167813628|ref|ZP_02445308.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167822172|ref|ZP_02453643.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167843763|ref|ZP_02469271.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167900758|ref|ZP_02487963.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167917024|ref|ZP_02504115.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|217425029|ref|ZP_03456525.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|226194650|ref|ZP_03790245.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237810333|ref|YP_002894784.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242314449|ref|ZP_04813465.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254176788|ref|ZP_04883445.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254182258|ref|ZP_04888855.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254188224|ref|ZP_04894736.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254197080|ref|ZP_04903503.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254203658|ref|ZP_04910018.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254208633|ref|ZP_04914981.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254260212|ref|ZP_04951266.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254295700|ref|ZP_04963157.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|254360312|ref|ZP_04976582.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52208172|emb|CAH34103.1| LysR family transcription regulatory protein [Burkholderia pseudomallei K96243] gi|52428092|gb|AAU48685.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|76578408|gb|ABA47883.1| LysR family transcription regulatory protein [Burkholderia pseudomallei 1710b] gi|121227830|gb|ABM50348.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|124293714|gb|ABN02983.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126220372|gb|ABN83878.1| transcriptional regulator [Burkholderia pseudomallei 668] gi|126225112|gb|ABN88652.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|126242155|gb|ABO05248.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|134244527|gb|EBA44631.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|147745170|gb|EDK52250.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147750509|gb|EDK57578.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|148029552|gb|EDK87457.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|157806013|gb|EDO83183.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157935904|gb|EDO91574.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|160697829|gb|EDP87799.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|169653822|gb|EDS86515.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|184212796|gb|EDU09839.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|217392049|gb|EEC32075.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|225933351|gb|EEH29343.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237505039|gb|ACQ97357.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|238523604|gb|EEP87041.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|242137688|gb|EES24090.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|243061155|gb|EES43341.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254218901|gb|EET08285.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 351 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LR+ + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|325923478|ref|ZP_08185133.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] gi|325546045|gb|EGD17244.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] Length = 308 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 14/248 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V + FT AAE L ++ S++S+ I+ LET +G KL +R R L LT +G Sbjct: 15 EMEVFIAVVAAEGFTAAAEPLGMTASAVSKLINRLETRLGTKLLHRTTRKLQLTPEGIAF 74 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H + ++ + E + P G++RI + + G + L L EFL YPD+Q+ + Sbjct: 75 HERCLRILDDIDCAEHEAGQVG-SPRGRVRINSHVAFGVHYLLPRLPEFLAHYPDVQLDV 133 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ D +D AIR P+ S L QR+L + A+P YL+ P ++L Sbjct: 134 TLSDVVVDLLDDRSDVAIRT-GPLPDSRLTQRRLGASGLVVVASPDYLRRAGTPELPEDL 192 Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +H + F D P D +A P G+ L++ S+ Q + G+G+ Sbjct: 193 HQHRRLGFNYARHVDAWPFIGRDGARVAIA--PSGD-----LRLGDGESMRQMALAGAGV 245 Query: 242 ALLPDYIV 249 A L Y V Sbjct: 246 ARLARYHV 253 >gi|170739445|ref|YP_001768100.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193719|gb|ACA15666.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 306 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD L+VF VARSG A +L L+ ++++R+I GLE +G LF+R G LTE Sbjct: 1 MNWDHLQVFLAVARSGQMLEAGRRLGLNHATVARRIEGLEAALGATLFHRRPHGSVLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L V + ++ L+ +P+G +RI LG L L + + Sbjct: 61 GEGLVPVAERIEAEVLAATARLRAQEAEPTGTVRIGAPDGLGNLFLARELGRLARRHAGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L+ + +S AD AI L +P LI KL + YAA YL P Sbjct: 121 IIELVPLPRSFSLSRREADLAIGLDRP-SHGRLILSKLSDYSLGLYAARDYLDQAGAPAG 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H + ++D+ + + +D + + + + ++ G+G Sbjct: 180 EADLAAHPAVI-------GLDDYAYASALDYAAFLQDRARRVFRCAGAVGQLEAVRAGAG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +L D+ P+LVR++ + +P++ ++ A R+FI Sbjct: 233 IGILHDFAAAGCPDLVRVLPGIQFRRTYWLMSHPDS-HEARRVAACRDFI 281 >gi|284920104|emb|CBG33163.1| LysR-family transcriptional regulator [Escherichia coli 042] Length = 307 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 14 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 74 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 133 Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + I S LI KLVT+ A+P YLK P + Sbjct: 134 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 186 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 QEL HN + + +F+ +A + E +S + N S+++ + G+G Sbjct: 187 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 245 Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 246 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 301 >gi|189351988|ref|YP_001947615.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221210527|ref|ZP_03583507.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|189336010|dbj|BAG45079.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221169483|gb|EEE01950.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 307 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 149/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +V R SF+ AAEQL +S + +S++I+ LET++G +L +R R +T+TE G + Sbjct: 8 EDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G++++ L +F YP + ++ Sbjct: 68 VFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L + A+P YL P ++ + Sbjct: 128 LDLFDRLVDVAAEGYDLDVRIGDEI-ADHLIARRLAANYRVLCASPDYLARRGMPRTLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233 L H+ + + D P G R++ ++V LS +Q Sbjct: 187 LASHDCLAIKER--------------DHPFGVWRLNVRGDTVTVKVGGALSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + D+ L R++ D + P+ ++ Y E + + K++ +F+ Sbjct: 233 WALAGRGIVLRSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFL 291 >gi|315182209|gb|ADT89122.1| transcriptional regulator, LysR family protein [Vibrio furnissii NCTC 11218] Length = 302 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 10/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V SFT AAE L+L S++SRQ+ LE +G++L R R L LT+ G + Sbjct: 7 IQVFQQVVEDQSFTRAAENLNLVPSAVSRQVGELEKWLGVRLVNRTTRSLHLTDDGRRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +E+ ++E + L E SGK++I + +GQ ++ L EF +PDI + L Sbjct: 67 EKMAEISSQIEALK-ALNEDKSHLSGKVKITAPMMVGQIIVPDLLSEFKARHPDISLSLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ D+ + D AIR + SS RK+ I A+ YLKN +L Sbjct: 126 LMNRKADLIEEGFDVAIRAGN-LSDSSFFARKIGDIAFKTVASRAYLKNSPPLNEPSDLC 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +HN I L W V+ I ++S ++ N I+ + G G+A+LP+ Sbjct: 185 EHNCIINAAL----SNSKRWSYKVNHKIKAIKVSGDIESNESACILSFVRAGLGLAMLPE 240 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+++ L+ ++ D + + YP + ++A +++ Sbjct: 241 IYVREDLASGRLIEVLSDFASEPLPLNVIYPSNRLQSPTIRALIDYL 287 >gi|296156200|ref|ZP_06839039.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295893706|gb|EFG73485.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 318 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 11/294 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LRVF VAR SF+ AAE L +S + +S++I+ LET +G +L +R R + +TE Sbjct: 6 SPDLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +++ ++ ++ ++ + P GKLRI+++ G+ + L F YP Sbjct: 66 AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D++ + D +R+ I + LI R+L + H A+P YL P Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPGYLARHGAPR 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + +L H + I + F W TV +++ L N +++ + G Sbjct: 185 QLADLSSHACLA----IKERDHPFGLWRLTVRGETASIKVTGPLSTNHGEVAVEWALAGR 240 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + V+ + L +++ +V P+ ++ YP L + K++ +F+ Sbjct: 241 GIVLRSMWDVRPLLETGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFL 293 >gi|289677341|ref|ZP_06498231.1| LysR family transcriptional regulator [Pseudomonas syringae pv. syringae FF5] Length = 322 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 14/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F +GSFT AA+QL L++S++ + I LE + ++L R R L++T++G Sbjct: 7 NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDEGQI 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ V L+ + L PSG+LRI+ + LG+ + +++ L +P + + Sbjct: 67 LYERCVGVLQDLDDVEDALAFRRSTPSGRLRISLPVALGRLHVLQHIECCLNDWPSLSVD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D A+R+ P + S L+ R + M A+P YL EP + ++ Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHDEPKTPED 186 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H + F G L+P W V+ + LQ++S S+ Q + G GI Sbjct: 187 LSEHQCLHFVSGGRLLP-------WNFRVNGSSVPVTHGGRLQMDSAESLHQSAIAGLGI 239 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A LP Y+V D+ LV+++ + + YP + K++ F Sbjct: 240 ATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLF 287 >gi|146312778|ref|YP_001177852.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145319654|gb|ABP61801.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 298 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 24/303 (7%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V SGSFT AA +L +S + + I+ LET++G +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVESGSFTGAASRLEMSAVMVGKYIALLETQLGTRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ P+G LR++ LG ++ FL L+PD+ Sbjct: 62 GRVYFDEAKRVLEQVSIAESAVERLRTAPAGTLRVSAPTSLGGCVIAPLTATFLQLWPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIR+ + + + L+ + L M AAP YL P + Sbjct: 122 RVELDLTNRRVDLVDEGIDLAIRIGE-VHNDDLVAKYLCPYRMVICAAPEYLARHGTPQT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235 +L H C+ W L V+ + R + L+ N + Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAILRCNDGYGLRMAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 + G+G+ L P+ +V + L+R++ED V+ + + L+ KL F I Sbjct: 231 IAGAGLLLQPEVLVAEELAKGKLIRVLEDFTPEPRPVHLLWRQDLRPLPKLTHFIAHILA 290 Query: 293 KAR 295 A+ Sbjct: 291 GAQ 293 >gi|288960796|ref|YP_003451136.1| transcriptional regulator [Azospirillum sp. B510] gi|288913104|dbj|BAI74592.1| transcriptional regulator [Azospirillum sp. B510] Length = 315 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 138/284 (48%), Gaps = 7/284 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L V V SGS + AAE+L LS S+ISR+I+ +E +G +L R R + LT+ G+ Sbjct: 5 DDLTVLVEVVDSGSLSAAAERLGLSASAISRRIAQMENRLGTRLLARTTRRIALTDAGAT 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L+ + L E+ +P G LR+ + GQ + L +L +P + ++ Sbjct: 65 FCLRARAILAALDEAEQSLTETGEEPRGTLRVTMPVMFGQMRVAPLLPSYLRRHPGVSLE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ + + D AIR + + S+LI R+L + A+P YL+ P S + Sbjct: 125 VSLSDRVQRLVDEGLDLAIRTGR-LADSTLIARRLRPLRRSVVASPDYLERRGVPRSPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+ +T L ++ +L R + P Q ++ + V G G+A L Sbjct: 184 LARHDCLTL--LSGSGRPEWEFLVGERREVLRP-AGGFQADNLWMLRHAAVGGLGLARLA 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 D+IV+++ LV ++ D+ ++ YP + K+++F Sbjct: 241 DFIVEEDIRAGRLVAVLTDLEVMDEAIHAVYPATRHVSPKVRSF 284 >gi|220922493|ref|YP_002497795.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947100|gb|ACL57492.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 300 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 8/292 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD LR AR+G+ + AA L + S++SR ++ LE VG ++ +R A GLTLT G Sbjct: 7 WDHLRSLLAFARAGTLSSAARSLGVKHSTVSRHLAELERSVGSQIVHRAADGLTLTTAGE 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + L Q ++ G +RI G L + + +P + I Sbjct: 67 RLMNAAEGMEVLLRQAQDDIAGRDRLIQGTVRIGAPDAFGSIFLAPRITQLAAQHPALNI 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL+ + +++ AD A+ L P Q L+ +KL + YA+P YL R ++ Sbjct: 127 QLVAMPRVFNLTKREADLAVALAIP-QHGRLLAKKLADYGLGLYASPAYLSRSRPIRTLD 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H I + D + E ++L V P I+ Q +S L+ + V G G+ + Sbjct: 186 DLRGHQFINYIDELITIAE-LDYLDEV-----SPYINARFQSSSILAQLHATVSGFGLCV 239 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP ++ K P+LV ++ + T + E +++ FI+ R Sbjct: 240 LPYFLAKQYPDLVNVLGREVVLKRTWWLLVHEDQNELSRVRLVHQFIYDTVR 291 >gi|118590223|ref|ZP_01547626.1| probable transcriptional regulator protein, LysR family protein [Stappia aggregata IAM 12614] gi|118437195|gb|EAV43833.1| probable transcriptional regulator protein, LysR family protein [Stappia aggregata IAM 12614] Length = 293 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 129/262 (49%), Gaps = 10/262 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F +AR+G AA +L L+ ++++R+++ LE VG +LF R G LTE Sbjct: 1 MNWDDIRIFLAIARTGQILAAARRLGLNHATVARRLTSLEDSVGTRLFDRSTSGCLLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS+ + + + +L + + +G +RI G L L + +P + Sbjct: 61 GSRFFDRAERIEAEAVAAEADLTNDTPEITGTVRIGAPDGFGVAYLAPRLGKLTERHPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL+ + +S AD A+ + +P ++ L+ KLV + YA+ YL+ P Sbjct: 121 TVQLVPVPRSFSLSRREADIAVTIDRP-ETGRLVAGKLVDYSLGLYASKTYLERRGTPAI 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H+LI + +ED + +++ I + + ++ S L + G+G Sbjct: 180 ATDLTAHDLIGY-------VEDLLYSPSLNYGTEILKDWTARFEIASALGQTEAVRSGAG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDV 262 I +L D+I +D+ LV ++ D+ Sbjct: 233 IGILHDFIARDDSGLVAVLPDI 254 >gi|83716864|ref|YP_439738.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|257142876|ref|ZP_05591138.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650689|gb|ABC34753.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 299 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 16/291 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF A GS + AA+ L +S++ SR ++ +E G +L +R R LTLT G+++ Sbjct: 6 AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + + P G LRI + Q + + ++L YP + + L Sbjct: 66 LPLCRDMLGLADHVATVVAKPDDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ D+ + D AIR+ + SLI R+L T A+P YL P +L Sbjct: 126 LVTDRTADLVDERIDLAIRITNEVD-PSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +HN +T FG + W T D P P L N L +++ + G GIA Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP + + L R++ D P +Y Y + ++A +F+ Sbjct: 237 LLPTFAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRKQMPLAMRAMIDFL 287 >gi|114331364|ref|YP_747586.1| transcriptional regulator, LysR family protein [Nitrosomonas eutropha C91] gi|114308378|gb|ABI59621.1| transcriptional regulator, LysR family [Nitrosomonas eutropha C91] Length = 291 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 7/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ SF AA+ + + S++SR+IS LE +G++L +R R +TLTE G Sbjct: 5 NDMALFVEVVKAKSFRGAADAIGMPNSTLSRRISALEKTLGLRLLHRTTRKITLTEAGQI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + Q +L E +PSG LR + +D + + EF LYP I Sbjct: 65 YYERCKRIVDEAKLAQEQLSEMLTQPSGVLRASLPVDFTVTYMAPLIAEFAKLYPGIVFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D AIR+ KP ++S LI R L + + YA+P YL EP + Sbjct: 125 FDLTSRWVDLVNEPFDVAIRIGKP-ENSQLIARPLAVLPTYLYASPRYLDRSGEPAKPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + G + N T IG S +NS I + L GI ++ Sbjct: 184 LANHECL--GIMKADTWTLHNGTNTTKISIG----SRFTLNSVGMICRLATLDMGIIMMM 237 Query: 246 DYIVKDN 252 + IV D+ Sbjct: 238 EKIVADD 244 >gi|293408440|ref|ZP_06652279.1| conserved hypothetical protein [Escherichia coli B354] gi|291471618|gb|EFF14101.1| conserved hypothetical protein [Escherichia coli B354] Length = 308 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARVLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + I S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 QEL HN + + +F+ +A + E +S + N S+++ + G+G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 246 Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|218510637|ref|ZP_03508515.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Brasil 5] Length = 304 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 19/300 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V +GSFT AA L + ++++SR+I+ LE E+G +L R R L+ T+ Sbjct: 2 LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGARLLQRTTRSLSPTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +S+ +E + L E+ +P+G +RI+ + G + LQ + + L YP Sbjct: 62 GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLSTYPKS 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L + +++ + D A R ++ S+LI RKL + H A+P YL P Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 +L +H+ + G WL ++ P G+ I N ++M + G Sbjct: 181 PADLARHDCVVAGQ-----STHAQWL--LEGPHGQETIPVSGRFAANEMQAVMAAAIAGY 233 Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIA LP + ++D L R+++ TP ++ YP + +K FI L AR Sbjct: 234 GIARLPHGVANAYIRDG-RLCRVLDGYTTPVGGLHVVYPSSRHLPPLVK---TFIELAAR 289 >gi|148547927|ref|YP_001268029.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148511985|gb|ABQ78845.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 292 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 11/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F V GSF+ A +L++ Q ++S+Q+ LE +G +F R R L LT+QG Sbjct: 4 FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALTDQGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + E+ +LE + +G LRIA + G+ + + FL +P +QI Sbjct: 64 RFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHPYVQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L++ + D+ ++ D AIR+ ++S L+ L T YAAP YL+ P Sbjct: 124 DLRLNDYNEDLLVENIDLAIRI-GVVKSEGLVAVPLGTSTRRVYAAPAYLERHGRPREPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL HN I F +E ++ W T E I + N+ +I + + G GI+ Sbjct: 183 ELAGHNCIAF-----TLLEHYDRWHFTHRGEALEVAIKGNVTSNNSEAIREMVLGGLGIS 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P ++ + ++ ++++ T + V + + + + AF +F+ Sbjct: 238 LSPHWLFAADFEQGSVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFL 288 >gi|148253791|ref|YP_001238376.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405964|gb|ABQ34470.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 303 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 13/289 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + ++L F V + SFT AA +L +S++ +S+Q++ LE E+ L R R + TE Sbjct: 4 INLNRLVYFAAVVDAASFTRAAGRLGISKAVVSQQVAQLERELRTDLLVRTTRRVEPTEA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G LH + + + E+ EL +++ P G LRIA D G L + F YP Sbjct: 64 GRLLHARCAAILREAESAMAELAQTNAAPMGLLRIAAPNDYGTCTLAPIVTAFSRAYPAC 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++LIL + ID+ D +IR+ + S+L R++ + AAP+ +K P Sbjct: 124 RVELILSDSKIDLVASQIDLSIRVGW-LDDSTLQTRRIGSFRQLLVAAPNAIKRVAHP-- 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240 ++L I L E W T E L +N+ +++ + G G Sbjct: 181 -RDLAALPFIANTAL----KEPLTWQFTKGSAAREIVQMSQTLTINTTPAVLAATLAGGG 235 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +A+LPD+++ D+ LV I+ PS ++ +P A K+ AF Sbjct: 236 LAVLPDFLIGDDLAAGRLVPILPSWTLPSGGIHAVFPAARFRAPKVTAF 284 >gi|259415112|ref|ZP_05739034.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] gi|259349022|gb|EEW60776.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] Length = 307 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 10/285 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + DW+ +R F V A +GS + AA+QL L+Q ++SRQ++ LE E+ + LF R R L LT+ Sbjct: 17 TVDWNHIRAFLVTAEAGSLSAAAQQLCLTQPTLSRQVAALEAELELILFERIGRKLALTQ 76 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + + + G +RI + L +L L + + P Sbjct: 77 AGRQLLEHGRHMGDAASALTLTATGQAEAIDGTIRITASDILSSYVLPPILHQLRQIAPQ 136 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I L+ N D+ AD AIR +P Q LI R+L H YAA YL P Sbjct: 137 LTIDLVAANDIHDLMRREADIAIRHIRPEQ-PDLIARQLPDGQAHFYAATSYLDQHGRPQ 195 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GS 239 + ++L H+ I+FGD + +E L RP ++ + ++ + +L G Sbjct: 196 TPEDLATHDFISFGD-SKRMIEHARELGLTLRP------DQFRIETRNGLVGWDLLRAGF 248 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA + D + + + RIM V T F + L + K++ Sbjct: 249 GIAPMHDKVAEQTQGIERIMHWVPTTRFPFWLITHRELHTSRKIR 293 >gi|83644141|ref|YP_432576.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632184|gb|ABC28151.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 305 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 3/244 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA SFT AA+ L +S++ +R ++ LE+ +G +L R R ++LTE G Sbjct: 7 MQVFAEVAARKSFTAAADNLDMSRAMTTRYVNELESWLGARLLNRSTRRISLTEAGEACL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + + +P G +RI T++ GQ L + E+L YP ++ + Sbjct: 67 LRCRQILDLTDDVEAVAGKRETEPYGLIRITTSVAFGQVHLAPVVAEYLKRYPKTRVDMQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D AIR + +LI RKL A+P YLK P + +EL Sbjct: 127 LLDRSVNLIEERIDLAIRTTNDLD-PNLIARKLTDCRSAICASPQYLKERGAPKTPRELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +HN +T+ K F T E L N L++ C+ G+GIA+LP Y Sbjct: 186 EHNCLTYSHF-GKSQWRFTHKKTGAVEAAEV-TGNLSANEVLALTNACIAGAGIAMLPTY 243 Query: 248 IVKD 251 +V D Sbjct: 244 MVAD 247 >gi|295675268|ref|YP_003603792.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295435111|gb|ADG14281.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 310 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 148/289 (51%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +GSF AAE++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRHVVEAGSFVGAAEKMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ +L+ + +SV P G+LR+++ G N + + ++ YP + + + Sbjct: 67 ERLSQALTELDEAGQAVGAASVVPHGRLRVSSLSAFGLNHVMAAVADYAEQYPQVTVDMT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R++ T H+ A+P YL+ P S+ +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLRKHGTPKSVADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN + + + +E +AT D R+S L VN + +LG+GIA+L Sbjct: 187 ARHNYLQYAGV--SALE----VATGDAS-SRVRLSGNLIVNQLEAQRVVVLLGAGIAMLG 239 Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + LV ++ D + P ++ Y + K+++F +F+ Sbjct: 240 TEVIGSDLAEGRLVPLLVDEVPPRELPIHVVYTSRRHLSAKVRSFVDFL 288 >gi|85711235|ref|ZP_01042295.1| Transcriptional regulator, LysR family protein [Idiomarina baltica OS145] gi|85695148|gb|EAQ33086.1| Transcriptional regulator, LysR family protein [Idiomarina baltica OS145] Length = 285 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 27/295 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F S + AA +LH++ S++S+Q+ LE + G+ LF+R+ R +TLTE G + Sbjct: 9 MKAFTRTVELKSMSAAASELHMTVSAVSQQLRKLEKDNGLALFHRNTRVMTLTEAGEVFY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ Q +++ + P+G ++I + G LL L++ +PD+Q +L Sbjct: 69 QSCLDILSIAAKNQERMEQLTQTPAGVMKIMAPVGFGGGLLSEPLRQLTEQFPDMQFKLS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ D AIR+ P+ SSL L+ H+ A S EL Sbjct: 129 MTDEPIDLVTAGVDLAIRI-GPLPDSSLYSHHLINWHLVPCVA-----------STHELA 176 Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 K + + DL E F ++ T D P+ PRI QV++ + +Q G G ALLP Sbjct: 177 KRRVSSLEDL---QAETFIAHFSNTYDLPLPAPRI---QVDNMQTTVQLTCDGVGFALLP 230 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + VK N LVR++ D + VY P K + N I DW Sbjct: 231 EPEVKPQLQNGELVRLLPDWEGVEYGVYAVLPVKESIPAKTRLVMNVI----EDW 281 >gi|226945641|ref|YP_002800714.1| LysR family regulatory protein [Azotobacter vinelandii DJ] gi|226720568|gb|ACO79739.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ] Length = 304 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 14/248 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V + FT AAE L ++ S++S+ I LET +G KL +R R L LT +G Sbjct: 11 EMEVFIAVVAAEGFTAAAEPLGMTASAVSKLIHRLETRLGTKLLHRTTRKLQLTPEGGAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H + + + E ++ P G++RI + + G + L L EFL YPD+Q+ + Sbjct: 71 HERCLRILDDIGCAEHEAAQAG-SPRGRVRINSHVAFGVHYLLPRLPEFLGCYPDVQVDV 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ D +D AIR P+ S L QR++ + A+P YL+ P ++L Sbjct: 130 TLSDIVVDLLDDRSDVAIRT-GPLPDSRLTQRRIGASGLVVVASPDYLRRANTPERPEDL 188 Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +H + F D P D +A P G+ L++ S+ Q + G G+ Sbjct: 189 RQHRRLGFNYARHVDAWPFIDGDGARIAIA--PSGD-----LRLGDGESMRQMALAGVGV 241 Query: 242 ALLPDYIV 249 A L Y V Sbjct: 242 ARLARYHV 249 >gi|84389435|ref|ZP_00991241.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01] gi|84376950|gb|EAP93823.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01] Length = 301 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R R L LT G L+ Sbjct: 10 IRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTHAGQDLY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + G +++ LG+ ++ + EF+ LYPDI I L Sbjct: 70 ARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYPDISISL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ ++ + I RKL+ I M A+P Y +P ++L Sbjct: 130 DFSSNRVDLIEDAFDIAFRM-GSLEDAGFIARKLLDIEMGTLASPEYFARKGKPSHPKDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ +T + K F L + + LQ + ++Q G+GI +P Sbjct: 189 IHHDCLTGS--VRKW--SFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNGIIRVPT 244 Query: 247 -YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y +++ + L+++ E+ + P Y +++ F +F+ Sbjct: 245 IYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFV 291 >gi|293605878|ref|ZP_06688248.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292815665|gb|EFF74776.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 321 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 138/293 (47%), Gaps = 13/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D+ RVF VA GSF AA L L ++S+S I LET++G +L +R R + LT G Sbjct: 4 FDQYRVFAQVAEMGSFIKAAHALELPRASVSAAIQQLETQLGARLLHRTTRQVRLTPDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + +E Q S + SG+L I + + ++ L L +P +Q+ Sbjct: 64 QLLDRIRALLTDVEDIDQLFQASQRQVSGRLIIDAPSRIARRVIAPALPGLLRRHPRLQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ DCA+R+ + + SSL+ R L I + A+P YL+ EP Sbjct: 124 TLGSSDRAIDLVQVGVDCAVRIGR-LHDSSLVVRPLGLIALINCASPAYLREHGEPKQPA 182 Query: 185 EL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 EL D H + + PK + W G +I S + VN+ S + C+ G Sbjct: 183 ELPDGHWAVGYAS--PKTGRELPWEYLPGD--GSEQIFEVPSRVVVNNAESYIACCLAGL 238 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ +P + V+ D+ LV +M S V YP + + +L AF+ + Sbjct: 239 GLIQIPRFDVQHLLDSGQLVEVMPTCRAASMPVSLLYPPRRQRSRRLAAFQEW 291 >gi|163792437|ref|ZP_02186414.1| Transcriptional Regulator, LysR family protein [alpha proteobacterium BAL199] gi|159182142|gb|EDP66651.1| Transcriptional Regulator, LysR family protein [alpha proteobacterium BAL199] Length = 311 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 137/283 (48%), Gaps = 8/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VA +G F+ AA++L LS++ SR + LE +G++L +R R ++L+E G Sbjct: 7 LQTFVAVADTGGFSSAADRLGLSRAMTSRHVQVLEDRLGVRLLHRTTRRVSLSEAGLGYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + E++ P G LR+ + G+ L L FL+ +P + ++L Sbjct: 67 ERARRLLADFDDAETEVRGERATPRGTLRVNGPVSFGRAHLAATLPSFLVRHPGLSVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D+ + D AIR+ + + SSLI ++L T+ + A+P YL P + +L Sbjct: 127 VNDRVVDLIEEGYDVAIRIGR-LSDSSLIAKRLGTVAVRLAASPAYLAAHGIPTTPNDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + F D + PR++ N+ + + G+GI L PD Sbjct: 186 DHTWLGYTYSTGVAGLRFTSADGRDAVVRLGPRLTA---NNGDVLTEIAAGGAGIILQPD 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +I+ + LV ++ D P ++ + ++ K++AF Sbjct: 243 FILGPYLADGRLVPVLPDWGVPDLDIHAVHHQSRHVAAKVRAF 285 >gi|15890397|ref|NP_356069.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15158618|gb|AAK88854.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 301 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 7/247 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V G F+ AA +++ S++S+ I+ LE+ +G +L R R L +T +G Sbjct: 11 EMEIFVRVVELGGFSRAAAAANMTPSAVSKLIARLESRLGARLLNRSTRQLQITPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + LE + E +P G++RI T+ ++L L FL L+P+I + + Sbjct: 71 YERATRILADLEEAERAAGERE-RPIGRVRINTSASYATHILAPILPRFLALHPEITLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + +D+ + D A+R P++SSSL+ RKL M AAP YLK C P +I +L Sbjct: 130 VQTDLVVDLLAERMDVAVRA-GPLKSSSLVARKLGETRMVIAAAPDYLKRCGVPQTISDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + HN + G + ++ W L + + P +QV+ + + + G G+ L Sbjct: 189 EGHNCLALG--YARSID--GWPLQDGGKTVVIPATGRVQVSDGEGLRRLALAGVGLVRLA 244 Query: 246 DYIVKDN 252 + ++++ Sbjct: 245 AFTIRED 251 >gi|330810393|ref|YP_004354855.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378501|gb|AEA69851.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 309 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 11/293 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++++++ + LE + +KL R R + +T G+ Sbjct: 4 FDAMQAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVKLLNRTTRKVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + + + P G+LR+ L +L L F YPDIQI Sbjct: 64 VYYERVIRLLADMDDAETSVSGAQALPRGRLRVDVPSPLAAMILIPALPTFYGRYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + ++ SLI R++ + + +AAP YL P + Sbjct: 124 DMGVSDRIVDMLDENVDCVVRGGE-LRDQSLIARRVGDLALGVFAAPSYLARFGMPAHPR 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSG 240 EL+ + T G L + + + D + G ++ N+YL+ + G G Sbjct: 183 ELEDSHHRTVGFLWARTGKSLPYAMRRDGELLHVKGRYALAIDDGNAYLAA---GLAGLG 239 Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LP Y+ + LV + ED +Y YP + KL+ F ++ Sbjct: 240 VLWLPKYMSGPHEAQGGLVPLFEDWHLEPMPLYLAYPPNRHISAKLRVFIEWV 292 >gi|78060944|ref|YP_370852.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77968829|gb|ABB10208.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 353 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 11/296 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF AA++L + +SS+SR + LE + +LF R R ++LT +G + Sbjct: 44 TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 103 Query: 70 TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 L +++E S PSG LRI +T G+ ++ L++F YPDI ++L+L Sbjct: 104 CRPGIEHLAQALDDMRELRSGPPSGHLRIGSTPGFGRKIIAPLLRDFHAQYPDITLELLL 163 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ D S D D R + ++ S+++ R+L+ + M A+P Y+ P + EL + Sbjct: 164 NDRPADFSADRIDVEFRDGR-MEDSAIVARQLIPMQMIVCASPSYVHRHGLPRHVDELAQ 222 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H I + E W VD + +++ N +++ + G GIA LP Y Sbjct: 223 HRCINLRTASGRVTE---WEFKVDGLTQQRQLAAHHTFNDMDLVVRAALDGLGIAQLPAY 279 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 V D + LV + Y CY +++ F +++ +ARD + Sbjct: 280 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 335 >gi|323191415|gb|EFZ76677.1| bacterial regulatory helix-turn-helix protein, lysR family protein [Escherichia coli RN587/1] Length = 308 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNAKLIYRTTRNMSLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 QEL HN + + +F+ +A + E +S + N S+++ + G+G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EMEVSGKYISNDDESMIRMALNGTG 246 Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|149917393|ref|ZP_01905891.1| transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] gi|149821730|gb|EDM81126.1| transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] Length = 323 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 17/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V +G FT AA QL LS+S++S ++ LE +G+KL R R + LTE G +L Sbjct: 12 LAVFGAVVDAGGFTAAAAQLGLSKSAVSSRVRRLEARLGVKLLNRTTRRMALTEAGGRLA 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R V +LE E + G++R+ + LGQ L FL P + I+L Sbjct: 72 RRVELVGGELEQASEEASALGSERVGRIRVNAPVSLGQRHLAEPTARFLCANPRVSIELD 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D AIR+ P+ SSL RKL T A+P YL P + +L Sbjct: 132 LSERRVDMIAEQYDLAIRV-GPLGDSSLRARKLATSRQLVVASPDYLARRGRPQTPADLR 190 Query: 188 KHNLITFGDLIPKCMEDFN-----WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H+ + + + +F V P+ CL + G G+A Sbjct: 191 EHDCLLYRHQLTGAAWEFGEGRGRSRVRVRGPMLSDNGDCLASAAR--------AGLGLA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+IV + L +++D ++ + E + L+A+ + + Sbjct: 243 SLPDFIVAEAIARGELAVVLDDHCRSLSPIHALFVEGRLMSNALRAYLDLL 293 >gi|307263857|ref|ZP_07545462.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870846|gb|EFN02585.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 297 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 33/307 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF +VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T Q EL+ G L+IA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTKQGELR-------GSLKIASNAAFGSTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R +++ R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236 S QEL H + ++ K W D G+ + S L +N +++ + + Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290 GIA+LP Y ++ N L ++ D P++ VY YP + +++F +F+ Sbjct: 231 ADGGIAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEE 290 Query: 291 FLKARDW 297 F DW Sbjct: 291 FEGKGDW 297 >gi|167587902|ref|ZP_02380290.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 294 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 131/284 (46%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A L +S S++ + I+ LE +G++LF+R R +TLT++G Sbjct: 9 AFVRAAETLSFVAAGRALGISASAVGKTIAKLEQSLGVRLFHRTTRRVTLTDEGRHFFER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + S+ +P GKLR++ + +G L L EF YPD+++ L + Sbjct: 69 CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRRHYPDVELDLDFN 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D IR + SSL+ R+L A P YL P ++L+ H Sbjct: 128 DRMVDVVEGGFDAVIR-SGALSDSSLMSRRLGPFGFVLCATPAYLAQAGTPRVPRDLEAH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + P + +W D + + N+ ++ + G GI +PD++ Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +D + LV +++D +P + + + KL+ F +F+ Sbjct: 245 RDALAHGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288 >gi|92112952|ref|YP_572880.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796042|gb|ABE58181.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 309 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 9/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F VA +GSF AA Q L SS+SR I+ LE +G +L YRH R + LTE G + + Sbjct: 10 LRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVRLTEVGERYY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E+ L+ + ++ +P G LRI + G+ + L F YP I+ +L Sbjct: 70 QQVREILDTLDIATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQARYPRIETELT 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ID + + + SSL+ R+L H AAP YL P + + L Sbjct: 130 LSDAFID-PVQDGVDVVVRVGALNDSSLVARRLAEQHFVVCAAPDYLAQWGIPATPESLV 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +HN + + F + E R L+ N+ S+++ + G GI L P + Sbjct: 189 EHNCLIYKGTRGVQQWYFRSEGARRYQVREVR-GNLRSNNAESLLEAALQGQGIVLFPTW 247 Query: 248 IVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAF 286 ++ + L+ ++ D ++ +PE + K+ AF Sbjct: 248 LIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAF 293 >gi|261822987|ref|YP_003261093.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607000|gb|ACX89486.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 298 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 146/286 (51%), Gaps = 11/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + ++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTAEGSLFLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL +++ P G+LR+ ++ L +L+ L EF+ YP+I++ L Sbjct: 69 SRRILAEIEAAELELSQTNAVPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R P+ S L R+L T A+P YL P + +L +H Sbjct: 127 DRMVDVIEEGFDAVVRTGNPVD-SRLTARRLGTFGFLLVASPDYLARHGTPKTPADLMQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + P + W A P G P + + N+ + + + + G GIA LPD+ Sbjct: 186 ACLHY--RFPNSGKLEPW-ALRLAPNGPELPLPTSMICNNIETRVCFALQGLGIAYLPDF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ L I+ D + S ++ +P + + K++A +F+ Sbjct: 243 SIRELLAKGLLQPILNDYVERSGVLHVLWPASKHPSPKVRALVDFL 288 >gi|222084632|ref|YP_002543161.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722080|gb|ACM25236.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 301 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 139/289 (48%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VA +GS + AA +L LS+S +S +++ +E +G L +R R LTLTE G+ Sbjct: 5 EGLTAFVTVAEAGSISEAARRLRLSKSVVSERLAEMEKTLGATLLHRTTRKLTLTEDGTV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ +L E +G LRIA + G+ L L FL +P+I++ Sbjct: 65 FLERATRIVREVREAAADLAERRGTLAGPLRIAAPVTFGRMHLGPVLYPFLAAHPEIELT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD++ +D + D D IR I S L+ L A+P YL+ P S + Sbjct: 125 LELDDRRVDAASDGYDAIIR-HGLIADSRLVAWPLARSRRLLVASPDYLRQHGMPASPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H I + + + + D+ + I +++ L +N+ + G GIALLP Sbjct: 184 LENHRGIFYTN---RGIADWRFQGPEGAVIVRGKLA-LGINNGDVSRDAAIAGLGIALLP 239 Query: 246 DYIVKDNPNLVRIME-DV---ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I + N +++ DV P F V+ +PE + KL+A + + Sbjct: 240 AFIAGPSVNEGLLVDIDVGCRPEPEF-VFMAHPEGRNPSAKLRAIADHL 287 >gi|241203171|ref|YP_002974267.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857061|gb|ACS54728.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 293 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + +G +R+ G + L + + +P++ Sbjct: 61 GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L +P Q L+ KL + YA+ YL P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRAYLAAQGTPAD 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I L H I + DLI +F+ G ++++ + + G+GI Sbjct: 180 IDALKAHRRIGYVEDLIFTASLNFSGAVMRSWDAG------FEISTAIGQTEAVRTGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L DYI + P L RI+ +V + + Y E ++ ++++ +F+ Sbjct: 234 GILHDYIARQYPELQRILPEV-SIRRAYWTTYHETARDLLRVRSVADFL 281 >gi|215485407|ref|YP_002327838.1| predicted transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312964669|ref|ZP_07778920.1| bacterial regulatory helix-turn-helix , lysR family protein [Escherichia coli 2362-75] gi|215263479|emb|CAS07805.1| predicted transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312290690|gb|EFR18568.1| bacterial regulatory helix-turn-helix , lysR family protein [Escherichia coli 2362-75] Length = 308 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 QEL HN + + +F+ +A + E +S + N S+++ + G+G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 246 Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|86360420|ref|YP_472308.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284522|gb|ABC93581.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 131/286 (45%), Gaps = 10/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 V V SGSF AA L L+ S +SR ++ LE+ +G++L R R L LT+ G++ + Sbjct: 12 VLAAVVESGSFARAAVALGLTASGVSRAVARLESRIGVRLLERTTRSLRLTDDGTRFYEQ 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +E ++ G+LRI + +L NL FL YPD+QI+++ Sbjct: 72 VVPLLGGIEEAAAYAAGTTQTVRGRLRINVDPYFSRLILGPNLGTFLDRYPDLQIEVVTR 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ D+ D D A+R + +SLI R+L + AAP YL P +L H Sbjct: 132 NEIGDLVADGMDVAVRFGEIPAKNSLIARQLFRTRVITVAAPSYLARHGTPKLPVDLTDH 191 Query: 190 NLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I + D P F W + PI E R L VN + + C+ G GIA + Sbjct: 192 TCIQYQD--PLTGRAFEWELRRGKKVVPI-ETRGRVL-VNDAGTALATCLAGIGIAQVFS 247 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +K D+ LV + D +F ++ Y K++AF +F Sbjct: 248 LGMKPYIDSGQLVDLYPDWPDETFPLHCFYTSRHHVPAKVRAFIDF 293 >gi|296155952|ref|ZP_06838791.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295893458|gb|EFG73237.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 311 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 145/291 (49%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF +A + SF AA L +S + +R + LE + +L R+ R L+LTE+G Sbjct: 7 MRVFINIADTMSFGQAAANLGISNAMATRYLEQLEAHLNTRLVNRNTRSLSLTEEGEIYS 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V ++E + +++P+G LRIA + L L+E+L YP++++ + Sbjct: 67 KGCRNVLDEIEEIETVTIRGTIEPAGTLRIAAGASFSLSSLTPLLQEYLRQYPNVRLSVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + D I L K I ++LI+R L+++ A A+P YL P +L Sbjct: 127 LLHQHVDFVKEGFDVGIVLPKQIGGTTLIKRSLLSVRPIAVASPSYLAVKGVPSRPADLT 186 Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIAL 243 H + + D +W+ A DR E R++ L VN+ L + Q + G GIA+ Sbjct: 187 SHTFLA----LTAASHDGDWIFAAPDRR--EKRVTLDAALMVNNALMLRQAALAGMGIAV 240 Query: 244 LPD-YIVKD--NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNF 289 LP+ +++ D + L++++ D + + Y + + K ++F +F Sbjct: 241 LPENHVLNDLRSGTLMQVLTDFRITNADKELALVYADRRHISAKTRSFVDF 291 >gi|296105251|ref|YP_003615397.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059710|gb|ADF64448.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 11/275 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F VA SF+ AAE L L + S+SRQI LE +G +L +R R ++LT+ G Sbjct: 5 NAMQLFVRVAELESFSRAAETLTLPRGSVSRQIQALENRLGTQLLHRTTRRVSLTQDGMV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ L+ Q SG+LR+ + + +NL+ L FL YP I+++ Sbjct: 65 YYERAKDLLANLDELDGMFQHDPSSISGRLRVDMPVGVARNLVIPKLPAFLQQYPGIELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC +R+ ++ S LI R L + + A+P YL P ++ + Sbjct: 125 LSSSDRLVDVIREGFDCVVRV-GTLKDSGLIARPLGKLTVINCASPDYLTRFGYPETLDD 183 Query: 186 LDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H +I + ++ P+ E +N T G L VNS + C+ G GI Sbjct: 184 LASHAVIHYAAMLGTRPQGFEFYNGSTTQWVKTG----GVLTVNSTETYHAACIAGLGII 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 +P V+D+ L+ ++ V YP Sbjct: 240 QVPRVGVRDSLRTKKLIEVLPQYRAEPMPVSLIYP 274 >gi|237731565|ref|ZP_04562046.1| LysR family transcriptional regulator [Citrobacter sp. 30_2] gi|226907104|gb|EEH93022.1| LysR family transcriptional regulator [Citrobacter sp. 30_2] Length = 301 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 24/295 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V G F AA+ LHL + ++++ I LE ++G KL R R ++LTE+G + Sbjct: 1 MNIFVQVVEQGGFARAADVLHLHRPAVTKAIQHLEDDLGAKLLNRTTRKVSLTEEGDAFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + T + ++ + P GKLR+ + L ++L LK+F YPDI++ L Sbjct: 61 QRTKILLSDVDDIMASFSPAR-PPRGKLRVNAPLSLAHSVLVPALKDFQSRYPDIEMVLT 119 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ID+ + DC IR+ + +Q S+LI R+L + M A+P YL+ P ++L Sbjct: 120 STDRRIDMLAEGIDCMIRIGE-LQDSTLISRRLGEVKMVTCASPDYLQKQGVPQVPEDLS 178 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H + F + E W V+R P G RIS V++ ++ C+ G G Sbjct: 179 RHQALNF--FSERHREALEW-TFVNRGKTESFTPAG--RIS---VDNSDILLTGCLSGLG 230 Query: 241 I-----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I A+L Y+ + LV ++ D S V YP+ +++ F +++ Sbjct: 231 IIRGVHAVLAPYL--QSGQLVEVLADYTGESKPVSVLYPDRRHLAPRVRVFIDWL 283 >gi|209519074|ref|ZP_03267881.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209500516|gb|EEA00565.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/315 (27%), Positives = 143/315 (45%), Gaps = 29/315 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L VF V SGS T AAE+L + S +SR ++ LE ++ L R R L LT Sbjct: 1 MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEQKLDTALVRRTTRRLHLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G R + LE + + +PSG+LR+ + + ++ F LYP Sbjct: 61 EEGDAFLRRARAILDALEEAEESVARGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L + + +D+ D AIR+ +Q S+L R L + A+P YL EP Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRI-GALQDSTLHARALGESRLRVLASPAYLAGHGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIG----------EPRISCLQVNS 227 ++ L H LI F P+ + + + R G EP I+ +S Sbjct: 180 TTLDALRAHRLIGF--TAPEHLNRWPLRDGGRATKRATGQRDDAALLKIEPSITA---SS 234 Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNT 280 ++ Q + G GIA L D++ + P L ++ D P VY+ ++ Sbjct: 235 GETLRQLALSGWGIACLADFMTAADVREKRLVPILGNLLVDERQPVHAVYY---QSASLA 291 Query: 281 GKLKAFRNFIFLKAR 295 G+++ F +FI + R Sbjct: 292 GRVQCFLDFIAARVR 306 >gi|126452605|ref|YP_001065734.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|242316354|ref|ZP_04815370.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|126226247|gb|ABN89787.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|242139593|gb|EES25995.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLCDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H L+ + + + W+ V R R++ VNS + + C+ G G Sbjct: 184 LERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGPIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|323492857|ref|ZP_08097999.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis LMG 20546] gi|323312928|gb|EGA66050.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis LMG 20546] Length = 319 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V + GSFT AA + S++S+QI LE ++G++L R R +LT G ++ Sbjct: 6 QLSLFIDVVQQGSFTKAAALNDMDNSALSKQIKKLEADLGVQLLNRSTRSFSLTPAGEEI 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L Q +P G++R+ +GQN LQ + EFL YPD++I+L Sbjct: 66 LQQAHNLVGTLHHVQSIADSYHAQPKGRIRVTAPFHIGQNHLQPVITEFLKTYPDVEIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +LD+K DI D+ D A RL + + SSLI RK+ I A+ +++ EP + +EL Sbjct: 126 LLDDKRSDIISDHFDVAFRLGR-LDDSSLIARKIADIRAVILASNKFIERYGEPKTPEEL 184 Query: 187 DK 188 K Sbjct: 185 VK 186 >gi|229514467|ref|ZP_04403928.1| transcriptional regulator [Vibrio cholerae TMA 21] gi|229348447|gb|EEO13405.1| transcriptional regulator [Vibrio cholerae TMA 21] Length = 301 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|221211328|ref|ZP_03584307.1| LysR substrate binding domain protein [Burkholderia multivorans CGD1] gi|221168689|gb|EEE01157.1| LysR substrate binding domain protein [Burkholderia multivorans CGD1] Length = 322 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLAMPRASVTTTIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q+ KP+G LR+ LG+ L+ +L F YPDI + L Sbjct: 67 EHCVKILSEIAEADASFQKG--KPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLG 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + AAP YL EP I +L Sbjct: 125 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLRRVTCAAPDYLARHGEPREIADLA 183 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H + F G +P W+ +D +P+ + + VN + + + G G+ Sbjct: 184 GHYAVNFRATQGGRAVP-------WVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGM 236 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP + K++ F ++I Sbjct: 237 IQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWI 288 >gi|167587367|ref|ZP_02379755.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 302 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 8/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE+ +G++L +R R TLT++G Sbjct: 5 DLPALETFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E + +Q+ SG LR+ +LG+ L + EF +P + Sbjct: 65 AQFHAQVLRILAEIEQAEALMQDRRGTVSGLLRVTAPGELGRLRLAPLVAEFQRRHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + SS+I R+L AP YL EP Sbjct: 125 VQLMLTDSVVDLLAHEIDVAVRI-GSLADSSMIARELAPNRRVLCTAPAYLAEHGEPAHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL +H I G+ + + FN +G + L N + + G+GIAL Sbjct: 184 GELCRHRCIVMGEQL-RAEWRFNGEGGA---VGVEVTAALLTNDGGAARTLALAGAGIAL 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LVR++ P+ ++ YP +++AF +F+ Sbjct: 240 KSIWDVGPDLEAGRLVRVLPAYAAPAAPLHAVYPGGRHLAMRVRAFVDFV 289 >gi|254284680|ref|ZP_04959647.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|150425465|gb|EDN17241.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] Length = 301 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGEIFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|153010934|ref|YP_001372148.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562822|gb|ABS16319.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 297 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF SGS + AA +L +S +QI LE +G++L R R +LT+ G + Sbjct: 7 MRVFVKAVESGSISSAAHELEMSSQLAGKQIRALELGLGVRLLTRTTRRQSLTDSGQVFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + + E+ +P G+LR++ + G + L L E+L +P++ + L Sbjct: 67 ERAKNILAEMDLAEALMAETRSEPRGRLRVSAPVTFGSHALAPELSEYLRRHPEVSVDLN 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+++D+ + D R + SSLI ++L + AAP Y+ + + Q+L Sbjct: 127 LTNRNVDLVEEGFDVIFRA-GDLPDSSLIAKRLAPYRLILCAAPAYMDSASSLKTPQDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIALL 244 +H + F + +W + P GE IS NS ++ + G GI Sbjct: 186 EHECLIFTHSSLRT----HW--SFIGPEGEVTISITGRFCANSGEALRAAALSGMGILFQ 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 P +V D + L+R++ + PS ++ Y + T KL++F +F K D K Sbjct: 240 PYELVADEISSGKLIRLLPEYEPPSRALHALYASDRQMTPKLRSFLDFATEKFSDGK 296 >gi|71737267|ref|YP_274637.1| LysR protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557820|gb|AAZ37031.1| LysR protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 310 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 143/296 (48%), Gaps = 18/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AA LH+S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLL-RTTRKVNVTADGA 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L +++ P G+LR+ LL L F YPDIQI Sbjct: 63 AYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPRPFASMLLMPALPGFHARYPDIQI 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R + I SLI R++ + + YAAP+YL P+ + Sbjct: 123 DMGVSDRIVDMIGENVDCVVRGGE-ITDQSLIARRVGDLQLGVYAAPYYLTRMGTPVHPR 181 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ + +P M V G ++ N+Y++ + Sbjct: 182 ELEDSAHRIVGYLWARTSKALPYAMHRDGEKVHVQ---GRYALAVDDGNAYIAA---GLA 235 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LPDY+ + + +L+ + +D S +Y +P + K++ F ++I Sbjct: 236 GMGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 291 >gi|320181668|gb|EFW56583.1| Putative LysR-like transcriptional regulator [Shigella boydii ATCC 9905] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 14 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 74 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 133 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 134 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 186 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 QEL HN + + +F+ +A + E +S + N S+++ + G+G Sbjct: 187 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 245 Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 246 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 301 >gi|218698799|ref|YP_002406428.1| putative LysR-like transcriptional regulator [Escherichia coli IAI39] gi|218368785|emb|CAR16531.1| putative LysR-like transcriptional regulator [Escherichia coli IAI39] Length = 339 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 46 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 105 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 106 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 165 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 166 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 218 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 219 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 275 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 276 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 333 >gi|53718953|ref|YP_107939.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|167738007|ref|ZP_02410781.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei 14] gi|167815188|ref|ZP_02446868.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei 91] gi|167845144|ref|ZP_02470652.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei B7210] gi|167902144|ref|ZP_02489349.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei NCTC 13177] gi|52209367|emb|CAH35312.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|107027592|ref|YP_625103.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693696|ref|YP_839229.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896966|gb|ABF80130.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116651696|gb|ABK12336.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 359 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 138/296 (46%), Gaps = 11/296 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF AA++L + +SS+SR + LE + +LF R R ++LT +G + Sbjct: 53 TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 112 Query: 70 TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 L +++E S PSG LR+ +T G+ ++ L++F YPDI + L+L Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 172 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ D S D D A R + ++ S+++ R+L+ + M A+P Y P + EL + Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDELAR 231 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H I + E W +D + +++ N +++ + G GIA LP Y Sbjct: 232 HRCINLCTASGRVTE---WEFRIDGVTQQRQLAAHHTFNDIDLVVRAALDGLGIAQLPAY 288 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 V D + LV + Y CY +++ F +++ +ARD + Sbjct: 289 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 344 >gi|332716844|ref|YP_004444310.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gi|325063529|gb|ADY67219.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 309 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 8/294 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA L S +++SR I LE + KLF R+ RG LT Sbjct: 9 FTWDDLQYFLAVARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTTV 68 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + E Q ++ ES G +R++ LK+F + +P I Sbjct: 69 GRRLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAVTHPHI 128 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ + + +S AD A+ L P ++ I ++V +H YA+ YL + + Sbjct: 129 MVEMVTIQQIMALSKKEADVAVTLDPP-KAGPYINEQIVDYTLHIYASRSYLASHPKITR 187 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L H I + DLI N++ V P P Q +S + + + G G+ Sbjct: 188 REDLPDHFFIGYVQDLI--FSPGLNYMRDV-MPGLRPN---FQSSSIFAQLTATLSGRGL 241 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +LP++I P+L ++E + + + L N ++++ +FI AR Sbjct: 242 CILPNFIAARFPDLQMVLEGEVELRRGYWLTSHQDLANVPRVRSLMDFILTTAR 295 >gi|91978809|ref|YP_571468.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91685265|gb|ABE41567.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB5] Length = 311 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 9/251 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F V SF+ AA +L LS+ ++S+ ++ LE +G +LF R +R L LT+ G Sbjct: 13 DFEALAIFAKVVELRSFSAAAAELTLSKPTVSKAVTRLEARLGARLFNRTSRRLALTDAG 72 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L +++ E + E S P G +R+A + G ++ L +FL YP++ Sbjct: 73 HRLAERATQLLADGEAAESEALAQSAAPRGLVRLAVPMTFGVRVIAPLLPDFLAAYPEVS 132 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D +R+ + SSL+ R+L + + AA YL P Sbjct: 133 IDLHLSDAMVDLIGEGFDAGVRIAS-LPDSSLVARRLCAMPRYTVAAKAYLARYGRPTHP 191 Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + P N RP G L+VN+ +++ V G G Sbjct: 192 MHLAEHRCFGYAYRTTPNVWSYTNARGEQAAVRPSGP-----LRVNNGEAVLPAVVAGLG 246 Query: 241 IALLPDYIVKD 251 IA LP++IV + Sbjct: 247 IADLPEFIVGE 257 >gi|30249514|ref|NP_841584.1| transcription regulator LysR [Nitrosomonas europaea ATCC 19718] gi|30138877|emb|CAD85455.1| Bacterial regulatory protein, LysR family [Nitrosomonas europaea ATCC 19718] Length = 305 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 142/289 (49%), Gaps = 6/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F V +GS + AA+++ +++S +SR++ LE +G++LF+R R + LT+ G Sbjct: 4 FENMNAFVRVVETGSISAAADRMDIAKSVVSRRLKELEEHLGVELFHRTTRQMNLTDSGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + + + + + G L++A + G L + FL +PDI+ Sbjct: 64 AFYQQSVRILADVLEAEHATSQFHGRLKGHLKVAVPLSFGLMHLGAAISTFLQTHPDIEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L +++ +D+ + D AIR+ + SSLI R+L I A+P YL+ P + + Sbjct: 124 DLDFNDRQVDLLAEGFDLAIRIAN-LPDSSLIARRLAPIQAVMCASPAYLERMGTPQAPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +H + + +L+ +++N T I I L+ ++ + V G GI LL Sbjct: 183 ELIRHRCLVY-NLVSHS-DNWNVYGTTGELIKTRIIPYLKASNGEFLRDAAVDGLGIVLL 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV L+ I+ Y YP+ + +++AF +F+ Sbjct: 241 PTFIVYREIQRGALIPILTGYHYAQLAAYAIYPQTRHLSQRVRAFVDFL 289 >gi|70732141|ref|YP_261897.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346440|gb|AAY94046.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 301 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 14/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GS + AA+ L LS+ +SR ++ LE VG +L +R R L+LT G ++ Sbjct: 7 MRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTAAGGEIL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ Q + E P G LRI+ + GQ+ L + +++ YP + I L Sbjct: 67 PRCRQMLELSSDMQAAVGEPDDAPRGLLRISVSTSFGQSQLADAVADYVKRYPGVSIDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +++ + D AIR + +LI R+L A+P YL+ P ++EL+ Sbjct: 127 MLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVICASPAYLREHPAPQRVEELN 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +HN +T FG + +D ++ P + N ++++ + G+GIA+L Sbjct: 186 RHNCLTHSYFGKSLWHFEQDGEQVSV-------PVQGNISANEASTLLRTTMAGAGIAML 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 P Y + LVR++ + +Y Y L++ +F+ L+ Sbjct: 239 PSYQAGEYIKRGELVRLLPHAEPRTMNMYAVYASRKHMPATLRSMLDFLVLR 290 >gi|107026140|ref|YP_623651.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692676|ref|YP_838209.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170738075|ref|YP_001779335.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895514|gb|ABF78678.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116650676|gb|ABK11316.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|169820263|gb|ACA94845.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 303 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 11/302 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + +R+F V G+FT AA QL + S +SR+I LE ++G++L YR R +++TE Sbjct: 1 MDLESIRIFLRVVERGNFTAAATQLDMPLSRVSRKIKQLEEDLGVQLLYRTTRRVSVTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + L +++ +P G LR+ +G L+ L EF YP + Sbjct: 61 GRDYYERCLRAEEILLDADRQVRALRTEPEGTLRVLVPYAIGLFELEPALAEFRRRYPLV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI DN +D+ D A+R + S + R L H A+PHYL P + Sbjct: 121 QLVLIYDNSALDLVEHGFDVALRT-GVLSDSGYVARSLGWSHAKFAASPHYLDRAGRPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Q+L H+++ G P A D P+ IS N +++++ G G Sbjct: 180 PQDLADHDILFVGRDTPGLTLRLTNAAGDVADVPVRPVLIS----NESVTVLRQAASGGG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IAL+ + ++ L ++ D T ++ YP+ K++AF F+ Sbjct: 236 IALISTHFTTRRLESNELEIVLPDWHRTDDVELHALYPKRATLDSKVRAFVEFLTEVFTA 295 Query: 297 WK 298 W+ Sbjct: 296 WR 297 >gi|170694019|ref|ZP_02885175.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170141091|gb|EDT09263.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 366 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ + + N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|115360564|ref|YP_777701.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285892|gb|ABI91367.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 305 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G Sbjct: 6 SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V +++ + + ++ P G+L++ + + ++ L EFL +P+I I+L Sbjct: 66 YERCVGVLREIDDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPEFLAAHPNISIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ + DC +R+ + S +I R++ ++ AAP YL C P ++ EL Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIARRIGSLTTCTCAAPAYLDRCGAPETVDEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H + + W VD GE RI + VN + ++ V G G+ Sbjct: 185 AQH--VAISHISADTGRPRPWDYVVD---GETRIVQMCGTVAVNDADTYIECGVAGIGLI 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+ + L ++ D P + YP KLK F +++ Sbjct: 240 KTSLYLVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290 >gi|326795005|ref|YP_004312825.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326545769|gb|ADZ90989.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 298 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 140/294 (47%), Gaps = 16/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V + GS + AA +Q ++ R I LET VG LF R GL TE+ Sbjct: 7 WELYRSFLAVLQEGSLSAAARATGSTQPTLGRHIDELETHVGYSLFIRTQSGLVPTERAV 66 Query: 65 KLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L ++ ++ H +T ++ L +G +R+ T+ +G +L L EF P I+ Sbjct: 67 SLEKLALDMSHLAQTFERVALSNEDGIINGTVRLTTSDIVGVEVLPAVLSEFQKDNPKIE 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L+L + D+ AD A+R+ +P Q S LI RK+ T A+ Y++N P + Sbjct: 127 IELVLSDMPQDLLNREADIAVRMFRPKQ-SQLIARKVGTCKFGFCASKRYIENHALPKTA 185 Query: 184 QELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--G 238 +EL +H LI + D I + D + VDR + R +I+Q ++ G Sbjct: 186 EELRQHPLIGYDKETDFIRRNTRDLGF--DVDRSVFNYRADS-------NIVQLALIRAG 236 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 GI + ++K + NL+ I+E I V+ E L+N KA + + L Sbjct: 237 LGIGICQLAVIKYDNNLIPILEGAIKLELDVWVTMHEDLRNNPLYKAVFDALVL 290 >gi|319794055|ref|YP_004155695.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596518|gb|ADU37584.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 310 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 7/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+VF VA +GSFT AA++L L +++IS + LE +G +L +R R ++LT G Sbjct: 5 DLLKVFLSVAETGSFTRAADRLALPRAAISTAVQQLEARLGSRLLHRTTRRVSLTPDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +E + + + SG+L++ + + L+ L +F +P I+++ Sbjct: 65 LLERARALVTDMEDIEQQFLPAHSNVSGRLKVDVPSRIARLLIAPALPDFFARFPGIELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ ++ DCA+R+ P+ SSSL+ R L + A+P YL P + + Sbjct: 125 LGSSDRAVDLVLEGVDCALRV-GPLASSSLVARPLGHFTLINCASPAYLARHGTPQTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H + + P W D R+ S + N+ + + + G G+ + Sbjct: 184 LPAHLAVNYAS--PTSGRAAPWEWQRDGETATLRMRSQVAANNAETYIACALAGLGLIQI 241 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V+ + LV ++ D V YP + +++AF ++ Sbjct: 242 PAYDVRGHLAAGELVEVLADARAEPLPVQLVYPHRRNLSRRMQAFAGWL 290 >gi|78066378|ref|YP_369147.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967123|gb|ABB08503.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 12/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF A + SF A L +S S I + ++ LE +G++LF+R R + LT +G+ Sbjct: 6 LNVFVQAADTRSFVAAGRVLGISASGIGKSVTRLEQSLGVRLFHRSTRSVALTTEGALFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + Q EL E+S P G+LRI + +G L F YP+I++ L Sbjct: 66 ERARRILAEFDAAQAELSEASSVPRGRLRIGLPM-VGDPFLP-VFSAFRQRYPEIELDLD 123 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 DN+ DI + D +R + S L R L M AP Y P +EL Sbjct: 124 FDNRMADIIEEGYDAVVR-SGDVDDSRLTARPLGRFRMMLVGAPDYFARRGTPSHPRELV 182 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H+ I F +P + W D EP + + + N+ + M + + G GIA Sbjct: 183 EHDCIQF--RMPNTGKLQTWQLRCD-AGDEPELRLPTAITCNTNEARMYFAITGVGIAYA 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ K + LV +++D T +P T +L+AF +F+ Sbjct: 240 SEFSAKQALEAGQLVTVLDDYTAEQNTFQLLWPSGRHVTPRLRAFIDFV 288 >gi|254252031|ref|ZP_04945349.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa AUO158] gi|124894640|gb|EAY68520.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa AUO158] Length = 301 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWTFQEDGKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V + LV +++ P ++ +P+ Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|307257242|ref|ZP_07539013.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864284|gb|EFM96196.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 297 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 33/307 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQTV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T Q EL+ G L+IA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTKQGELR-------GSLKIASNAAFGGTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R +++ R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPTYLAQHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236 S QEL H+ + ++ K W D G+ + S L +N +++ + + Sbjct: 179 HSPQELANHSYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290 GIA+LP Y ++ N L ++ D P++ VY YP + +++F +F+ Sbjct: 231 ADGGIAMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEE 290 Query: 291 FLKARDW 297 F DW Sbjct: 291 FEGKGDW 297 >gi|167900301|ref|ZP_02487702.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] Length = 351 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LR+ + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P ++L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTYPEQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ D P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|331661667|ref|ZP_08362590.1| transcriptional regulator, LysR family [Escherichia coli TA143] gi|331060089|gb|EGI32053.1| transcriptional regulator, LysR family [Escherichia coli TA143] Length = 308 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 QEL HN + + +F+ +A + E +S + N S+++ + G+G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 246 Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|161521851|ref|YP_001585278.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345901|gb|ABX18986.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] Length = 335 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 149/300 (49%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +V R SF+ AAEQL +S + +S++I+ LET++G +L +R R +T+TE G + Sbjct: 36 EDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAGER 95 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G++++ L +F YP + ++ Sbjct: 96 VFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 155 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D +R+ I + LI R+L + A+P YL P ++ + Sbjct: 156 LDLFDRLVDVAAEGYDLDVRIGDEI-ADHLIARRLAANYRVLCASPDYLARRGMPRTLAD 214 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233 L H+ + + D P G R++ ++V LS +Q Sbjct: 215 LASHDCLAIKER--------------DHPFGVWRLNVRGDTVTVKVGGALSTNHGEVAVQ 260 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI L + D+ L R++ D + P+ ++ Y E + + K++ +F+ Sbjct: 261 WALAGRGIVLRSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFL 319 >gi|262043470|ref|ZP_06016593.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039212|gb|EEW40360.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 306 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 15/295 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE+ + ++L +R R L +T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQI Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC +R + I SLI R + + + Y AP Y++ P + Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGQ-ITDQSLIARHVGDLQIGVYVAPSYVERLGAPAHPR 182 Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL + G L + + D L + + I L V+ + ++ ++G G+ Sbjct: 183 ELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNAYLEAGLVGLGVIA 242 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290 LP+Y+ + + + P FT +Y +P KL+ F ++I Sbjct: 243 LPNYMAAAHQAV-----GALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWI 292 >gi|134282782|ref|ZP_01769485.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|134245868|gb|EBA45959.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIRELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|304396484|ref|ZP_07378365.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304355993|gb|EFM20359.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 298 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 133/295 (45%), Gaps = 15/295 (5%) Query: 1 MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+F W + +F +VA GSFT AAE+ L +SS+S++IS LE +GI+L R R L L Sbjct: 1 MAFRQWQDMALFALVAECGSFTGAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G + E+ E + PSG+LRI + +G LL FL LY Sbjct: 61 TFAGERYLLHCQEMMQASERADQAIASLRENPSGRLRITSPAGIGATLLARCNAAFLRLY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PD+ + + + ++ D+ + D A+R +P Q SSLI R++ A+ HYL Sbjct: 121 PDVTLDVSISDEMRDLVQEGFDVALRTGQP-QESSLIGRRIGNCPRLLVASQHYLNQHPP 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 L Q+L H I +N W+ D + + L + LG Sbjct: 180 LLHPQQLSAHRCIAH--------RAWNEWVLQRDGAFYRWLLPPGHLTDNLLYARESALG 231 Query: 239 -SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +GI LLP ++ +P LV ++ + ++ YP N+ L F F Sbjct: 232 DAGITLLPHFLTDGAMADPRLVPVLPEWEVEGNELWLVYPGRKLNSPALARFIEF 286 >gi|300114335|ref|YP_003760910.1| lysR family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540272|gb|ADJ28589.1| transcriptional regulator, LysR family [Nitrosococcus watsonii C-113] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 16/303 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V +GSF+ AA ++ S+S++S+ ++ LE ++G +L R R L+LTE G Sbjct: 3 DLNLMAIFARVVEAGSFSEAARRMETSRSAVSKAVAKLEKDLGARLLNRSTRHLSLTESG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + + E + + +P G LR++ ++ G + L +F+ YPDI+ Sbjct: 63 AALVEYAARILEEAEQAEQVVSSLHTEPRGILRVSASVAFGTLHIAPALADFVAQYPDIK 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + + ++ +D++ + D IR+ +L+ RKL +H A P Y + P Sbjct: 123 IDMAITDRPVDLAEEGYDMIIRVTGE-PDLNLVARKLAPVHRKLCATPEYFQQHGIPQIP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240 ++L H+ + + E W T P GE P L++N ++ Q G G Sbjct: 182 EDLVNHDCLDYT----LSGEQGYWHFT--GPEGEIAVPVSGPLRINDDDALAQAVRGGLG 235 Query: 241 IALLPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 IALLP + V KD L ++ + VY Y K++ F +F+ F Sbjct: 236 IALLPTFTVGKDLQKGRLQAVLSKYLPVKRYVYALYLPTRHLAAKIRVFIDFLLARFGPE 295 Query: 295 RDW 297 DW Sbjct: 296 PDW 298 >gi|209515838|ref|ZP_03264700.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209503686|gb|EEA03680.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 367 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ + + N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|313500382|gb|ADR61748.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 302 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 16/298 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V GS + AA+ L LS+ +SR ++ LE VG +L R R L+LT G + Sbjct: 5 NAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTAAGQE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ Q +Q+ P G LRI+ + GQ L + ++ +PD++++ Sbjct: 65 TLPRCRQLLELAGDLQAAVQQPEDSPRGALRISVSTSFGQAQLVDAVAAYVRRFPDVKVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + D AIR + SLI R+L AAP YL P ++E Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQRVEE 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +HN +T FG + W A + + P + N +++ + + G+GI Sbjct: 184 LSQHNCLTHAYFGHSL--------WHFAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 A+LP + D LVR++ + + Y L++ +F+ + +D Sbjct: 236 AMLPTFQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293 >gi|221068730|ref|ZP_03544835.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220713753|gb|EED69121.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 305 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF+ +A+ GSF A L LS ++IS+ I+ LE VG +L R R + LTE+G Sbjct: 7 LQVFHRIAQRGSFAEAGRSLGLSPAAISKNIAELEAHVGTRLIQRTTRRMALTEEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L L PSG L+++ + + L FL +P++Q+ L Sbjct: 67 EHVTRALDALADADSALCPFKAAPSGLLKVSAPMTFTLTQISCALPAFLERHPELQLDLH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +DI + D AIR ++ SSLI R L ++ AAP Y + P + +L Sbjct: 127 LDDRRVDIVREGFDLAIRGSDRLEDSSLIARPLTSMPHVLCAAPGYFEKRGRPHTPADLS 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP-D 246 I F + +F ++R R S V+S L++ G G++L+P Sbjct: 187 GLEHIRFSLSGHADVWEFEQGGRMERVAVNARYS---VSSSLAVRDALRAGFGVSLIPLP 243 Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ +D L +ED T +Y YP T KL+A +F+ Sbjct: 244 YVEEDLRTGRLQAALEDWSTVQTALYAIYPSRQHMTPKLRALLDFL 289 >gi|293394432|ref|ZP_06638730.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291423057|gb|EFE96288.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 297 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 136/286 (47%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F GSF AA + LS + + +S +E+++ ++L R R L+LT+ G + + Sbjct: 1 MQIFIAAVDEGSFAAAARRFKLSAAMAGKHVSAIESDLNVRLLQRSTRRLSLTDAGERYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE E + P G LR+A + G L + +L +P++ + ++ Sbjct: 61 ERCKVILEVLEDANREASDVQKTPKGLLRVAAPVAFGAMHLGRIVSRYLEQFPEVSLDVV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++K D+ + D AIR+ + + +L+ R+L M A+P YLK P + +L Sbjct: 121 LEDKYADLLENRIDVAIRVGR-FEDPTLVTRRLAPCRMVLCASPEYLKKHGTPETPDDLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + F + D+ RP + N+ +++ + G+GIA P++ Sbjct: 180 RAPRLAFSQAV--SAGDWTIYDAQGRPHSIEGPCRMTANNIQLLLESVLAGTGIAYGPNF 237 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ L++++ T T+ YP A++ K+++F +FI Sbjct: 238 VFGEHIKQGKLIKLLPAYRTTELTIQAVYPSAIRIPFKVRSFVDFI 283 >gi|254248231|ref|ZP_04941551.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124874732|gb|EAY64722.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 11/302 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + +R+F V G+FT AA QL + S +SR+I LE ++G++L YR R +++TE Sbjct: 1 MDLESIRIFLRVVERGNFTAAATQLDMPLSRVSRKIKQLEDDLGVQLLYRTTRRVSVTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + L +++ +P G LR+ +G L+ L EF YP + Sbjct: 61 GRDYYERCLRAEEILLDADRQVRALRTEPEGTLRVLVPYAIGLFELEPALAEFRRRYPLV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI DN +D+ D A+R + S + R L H A+PHYL P + Sbjct: 121 QLVLIYDNSALDLVEHGFDVALRT-GVLSDSGYVARSLGWSHAKFAASPHYLDRAGRPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Q+L H+++ G P A D P+ IS N +++++ G G Sbjct: 180 PQDLADHDILFVGRDTPGLTLRLTNAAGDVADVPVRPVLIS----NESVTVLRQAASGGG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IAL+ + ++ L ++ D T ++ YP+ K++AF F+ Sbjct: 236 IALISTHFTTRRLESNELEIVLPDWHRTDDVELHALYPKRATLDSKVRAFVEFLTEVFTA 295 Query: 297 WK 298 W+ Sbjct: 296 WR 297 >gi|238788576|ref|ZP_04632369.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC 33641] gi|238723489|gb|EEQ15136.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC 33641] Length = 307 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 3/244 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ + F VAR G+FT AA QL +SQS++S I LE ++GI+L R R ++LTE G Sbjct: 5 NYSYITAFLAVAREGNFTRAAAQLGVSQSALSHSIRTLEAKLGIRLLTRTTRSVSLTEVG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + + ++E E KPSG +RI T + +L L++ + YPD++ Sbjct: 65 EHLFKNLAPRFEEIEMELAAATEFRDKPSGTIRITATDYAIRTVLWPKLQKLVPEYPDLK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I+D DI + D IR+ + + + R I A Y KN P + Sbjct: 125 LEIIIDYSLADIVAERYDIGIRMGDQVANGMVAVRISPDIRFVIVGASEYFKNHSRPKTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 QEL HN + +P + W + + R+ L NS I+ + G+GIA Sbjct: 185 QELTTHNCMNL--RLPTRGGLYLWELEKEGQKLQVRVEGQLIFNSIYEILNATLSGAGIA 242 Query: 243 LLPD 246 +P+ Sbjct: 243 FMPE 246 >gi|116252887|ref|YP_768725.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257535|emb|CAK08632.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 15/274 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GSF + + LS+S+ + + LE +G +L R R L+LT++G + Sbjct: 11 IFMAVVDAGSFIAGGQAIGLSRSAAGKAVIRLEDRLGARLLNRTTRTLSLTDEGRMFYER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ ++ + + + P G LR+A G+ ++ L+++L +PDIQ+++ Sbjct: 71 GLQILVSVDEAEASVVGQNSTPRGVLRLAVPDAFGRLVVLPLLEKYLQAWPDIQVEVSFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ DI + D AIR+ + L+ R + T A+P Y EP I +L H Sbjct: 131 DRPADIVEEGFDLAIRVGATATDNRLVSRVIATYKTRLCASPSYFAERGEPRDIDDLAVH 190 Query: 190 NLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + + F + E +W+ R S L+++S +I + G GIALL Sbjct: 191 DCLIFASRNQRQGWRFRGEGGSWIKAQGR-------SRLRLDSAEAIRDAALAGLGIALL 243 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 PD++V D+ L +I+ D+ T + + YP+ Sbjct: 244 PDFLVADDLAAGRLRQILADLETDNAKIVTLYPD 277 >gi|254363086|ref|ZP_04979143.1| possible LysR family transcriptional regulator [Mannheimia haemolytica PHL213] gi|153094753|gb|EDN75539.1| possible LysR family transcriptional regulator [Mannheimia haemolytica PHL213] Length = 291 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 139/294 (47%), Gaps = 24/294 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + LR F +VA++ SFT AA Q+ +SQS++S I G+E + IKLF+R R ++ T Sbjct: 1 MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L++ ++ +++ L E G LRI + +++L EF+ YP Sbjct: 61 EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L+ +++ +DI + D IRL + + R + M A A+P+YL P Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDVKMTAAASPNYLAQHGTP 180 Query: 181 LSIQELD-----KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYL 229 + +L KH L T G ++ D PI +P+ + N +L Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRD---------PITKKIVKFQPQGNLTANNGFL 231 Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 + Y G GI P ++ DN +LV I+ D + YP +N+ Sbjct: 232 -LQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNS 284 >gi|327192070|gb|EGE59051.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 308 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V +GS + AA +L LS+S +S +++ LE +G L +R R LTLTE G+ Sbjct: 5 EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLTLTEDGAV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++E ++ E SG +RIA + G+ L L FL +PDI + Sbjct: 65 FLERAGRIVREIEEAAADMAERRGALSGPIRIAAPVTFGRMHLGPALYPFLAQHPDIHLT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D++ +D + D D IR P+ S L+ KL AAP YL P S+ + Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCAAPDYLARQGMPTSLAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H I + + + + D+ + T + I L +N+ + + G GIALLP Sbjct: 184 LNNHRGIFYTN---RGVADWRF-QTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239 Query: 246 DYIVKD--NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFI 290 +I L+ ++ P +Y +P + KL+A + + Sbjct: 240 AFIAGPAIREGLLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287 >gi|331651202|ref|ZP_08352227.1| transcriptional regulator, LysR family [Escherichia coli M718] gi|331050943|gb|EGI22995.1| transcriptional regulator, LysR family [Escherichia coli M718] Length = 329 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 36 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 95 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 96 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323 >gi|323524419|ref|YP_004226572.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323381421|gb|ADX53512.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 367 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ + + N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|253689979|ref|YP_003019169.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756557|gb|ACT14633.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 7/286 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + +F V +GSF AAE LH+ S+++R I LE+ +G +L R R L++T+ G Sbjct: 4 FQAMEIFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITDVGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + + + +G +RI L +N L L +F YP I + Sbjct: 64 RYYDSCKAILRDVHAAESVTAQQKGELNGTIRIGAPPSLVKNFLIPALPDFCERYPGITL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +DI DC IR +P S L+ R+L H + A+P YL+ P ++ Sbjct: 124 DFHLGDATVDIVQHGIDCVIRTGEP-PLSRLVARRLGAFHWYICASPRYLEQHGHPATLD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H + G + + W + P + VN + + V G G+ Sbjct: 183 SLKAHTAV--GYIHSRTGRSTRWGFHDEAHTVAMPLAGQISVNDTDAYVAAGVAGLGLIR 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + Y+V+ + +LVR+ D+ P ++ YP++ + ++AF Sbjct: 241 IASYMVRQPLADGHLVRLFPDIGAPLEPIFILYPQSRHLSPAIRAF 286 >gi|217423539|ref|ZP_03455040.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|217393397|gb|EEC33418.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRIALRARVT---VNSAEAYIACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|83592377|ref|YP_426129.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575291|gb|ABC21842.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC 11170] Length = 306 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 129/287 (44%), Gaps = 15/287 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA GSF+ AAE+L LS+S +S+ +S LE +G +L R R L+LTE G Sbjct: 7 METFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVNRTTRRLSLTEVGEVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + G LRI + G L + FL +P + + + Sbjct: 67 LRCQAILADLEEAEQAAGALHGAARGTLRINAPMSFGFRHLAAAIPPFLAHHPGLGVDMT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ D A+R+ + SSLI +L +H+ A+P Y+K P ++L Sbjct: 127 LDDRFVDLLDAGFDVAVRIGS-LPDSSLIAVRLAPLHIVVCASPEYIKAQGAPERPEDLT 185 Query: 188 KHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 HN L FGDL P +V P + N+ ++ V G G+ Sbjct: 186 GHNCLIYSLQRFGDLYPLVHAGGGEQVSV------PVHGRFRANNGDALRAAAVAGGGVM 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + P ++ D+ LVR++ + P + YP + K++AF Sbjct: 240 ISPTFLCGDDLRAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAF 286 >gi|115352133|ref|YP_773972.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170703341|ref|ZP_02894129.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|115282121|gb|ABI87638.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] gi|170131754|gb|EDT00294.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R++ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V + LV +++ P ++ +P+ Sbjct: 242 WWEVGGDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|169633663|ref|YP_001707399.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF] gi|169152455|emb|CAP01420.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii] Length = 300 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G+++++ +D+ QN L L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGEVKVSVPVDIAQNQLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QLI+ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237 S EL H +++ + + ++ L D + + ++S + N Y+ + Q Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD +D + LV+I+ D + YP G L A R FI Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|87118754|ref|ZP_01074653.1| Transcriptional Regulator, LysR family protein [Marinomonas sp. MED121] gi|86166388|gb|EAQ67654.1| Transcriptional Regulator, LysR family protein [Marinomonas sp. MED121] Length = 297 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F VVA++GSFT A++ L S++ +S Q+S LE +G+KL +R R L LT G Sbjct: 6 EEMTTFAVVAKTGSFTQASKVLGKSKTYVSLQVSRLEDAIGLKLMFRTTRRLELTPSGLA 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ + L+ G + ++ + GQ + + EF L YPD+++ Sbjct: 66 YVDYCEQLLATIDEAERALEVLKGDMQGVISLSVPVSFGQVFMTQVIAEFQLKYPDVKVA 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L N D+ + D A+R+ + L+ K+ + M YAAP YL P+ + Sbjct: 126 LELHNSVKDLKFESLDMAVRMSSEL-DEDLVAIKIGCLDMGVYAAPTYLAKYERPICPEN 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L H G L + W ++ + I+ L +N Y I + + G G+ L Sbjct: 185 LCHHT----GVLHSSVDKFHRWPLLIEGEVVLTEINWNLSINHYPLIRESAIEGKGLVRL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y+VK + L ++ D +Y YP K + F +FI Sbjct: 241 PSYLVKQDLIEKRLCEVLSDFKLEPDPIYLVYPYQGVLPLKTRVFIDFI 289 >gi|237809885|ref|YP_002894325.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237502146|gb|ACQ94739.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 143/301 (47%), Gaps = 13/301 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR V SGSF AA++LH S++++SR I LET +G++L R R + LTE Sbjct: 2 DRLRNLTALIAVVESGSFVAAAQRLHSSKAAVSRYIQELETYLGVRLLQRSTRRIALTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ T ++ L+ ++ + G +R+ + G L EF+ P + Sbjct: 62 GRDYYQRTKQILADLDDADSAAGANNSRLIGNIRVNAPLSFGTRYLAPLWAEFMERNPAV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + L ++ ID+ + D AIR+ + S+L+ R+L H AAP Y++ P + Sbjct: 122 TLDIELTDRRIDLLDEGFDLAIRIGN-LADSTLVSRRLADSHAVLCAAPAYVEKHGLPAT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241 + L +H +I+F L + F + +R I +PR + N+ +I + G GI Sbjct: 181 PEALTQHQVISFSYLPSGDVWHFQSASGEERAISLKPR---MHTNNGDTIRAVVLAGQGI 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARD 296 AL P + + L I+ P+F ++ YP + K+K +++ L D Sbjct: 238 ALQPIFEISPELQEGKLQTILPGWFGPTFGIHAVYPSRKNLSLKVKTLIDYLAEKLAGTD 297 Query: 297 W 297 W Sbjct: 298 W 298 >gi|119898858|ref|YP_934071.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119671271|emb|CAL95184.1| putative LysR-family transcriptional regulator protein [Azoarcus sp. BH72] Length = 335 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 147/291 (50%), Gaps = 9/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SF+ AA+ L L +++++ I LE + ++L R R L+LT+ G+ Sbjct: 4 FQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E T+ ++++ P G+LRI LG+ +L L +F YP+++I Sbjct: 64 AYYERCVAILADVEETESSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPELEI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DCA+R+ + SSL+ R++ T + AAP YL+ EP +I Sbjct: 124 AIGMTDRPVDMVREAVDCALRVGH-LPDSSLVARRIGTFFLVTCAAPSYLERHGEPRTIA 182 Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 EL H+ + F L + ++ W VD + E ++ + VN + + + G G+ Sbjct: 183 ELANHSAVNYFSSLNGRTLD---WDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMV 239 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P ++ ++ L ++ + YP + K++AF +++ Sbjct: 240 QMPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWV 290 >gi|86145038|ref|ZP_01063370.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222] gi|85837937|gb|EAQ56049.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R R L LT G L+ Sbjct: 10 IRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTHAGQDLY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + G +++ LG+ ++ + EF+ LYPDI I L Sbjct: 70 ARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYPDISISL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ ++ + I RKL+ I M A+P Y +P ++L Sbjct: 130 DFSSNRVDLIEDAFDIAFRM-GSLEDAGFIARKLLDIEMGTLASPDYFARKGKPSHPKDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ +T + K F L + + LQ + ++Q G+GI +P Sbjct: 189 IHHDCLTGS--VRKW--SFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNGIIRVPT 244 Query: 247 -YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y +++ + L+++ E+ + P Y +++ F +F+ Sbjct: 245 IYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFV 291 >gi|226942562|ref|YP_002797635.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226717489|gb|ACO76660.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 323 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 23/297 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA +GSFT AA +L L+ S +SR ++ LE+ + +L +R R + LTE G + Sbjct: 7 MRIFACVAETGSFTAAATRLDLTTSYVSRAVASLESHLRTRLLHRTTRRIALTEAGQRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +E + E ++ +P+G L++ +G + L + E+ YP++ L Sbjct: 67 QRCEQILGYIEEAEAEASQAHARPAGNLKVHAVTGIGNHYLIKAVAEYSEQYPEVSFDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ DI + D ++ + S I +KL I+ A+P Y+ P + EL Sbjct: 127 LANRTTDILEEGYDISVVTAPELADSGFISKKLGNIYSVLCASPLYIARHGLPRTPAELA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIAL 243 H + L+ M WL ++ P GE ++ QVN+ ++ G G+ Sbjct: 187 AHRCL---RLVYPVMSLDKWL--LEGPDGEELVTVSQTHFQVNTVDAMTVALKAGMGVGA 241 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y + + +LVR++ + S VY YP R ++ K R W Sbjct: 242 LPVYSALESLQSGSLVRVLPEYTLYSLGVYALYPS-----------RQYLDAKTRTW 287 >gi|330980813|gb|EGH78916.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 11/305 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+FD + + +F V RSGSF+ AA QL + ++ISR++ LE ++ +L R R L LT Sbjct: 1 MAFDLNDVALFVQVVRSGSFSQAARQLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60 Query: 61 EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + G + + R V +E + +L +PSG +RIA D + FL Y Sbjct: 61 QAGEEFYDRCVGAVDGGMEAAE-QLASGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178 P +Q++ +L + D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 P S+Q L H ++ + + L D + E I+ N+ ++ + + Sbjct: 179 MPDSLQSLHSHYCVS---AVHRGGVTAWRLLGPDTKMHEVHIASRFNANTAQALRKATLA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G GIALLP +++ + LV ++ S ++ YP + AF + K Sbjct: 236 GLGIALLPATLIRSDLRDGRLVPVLPRYQRISHGLHVLYPSRQHLPPAVSAFIALVLDKL 295 Query: 295 RDWKF 299 RD F Sbjct: 296 RDKAF 300 >gi|325522686|gb|EGD01198.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 305 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G Sbjct: 6 SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V +++ + + ++ P G+LR+ + + ++ L EFL +P I ++L Sbjct: 66 YERCVGVLREIDDMEAAVSQARNVPRGRLRVNLPPAMAKQIMVPALPEFLAAHPGISVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ + DC +R+ + S L+ +++ ++ AAP YL+ C P ++ +L Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGLVAKRIGSLTTRTCAAPAYLERCGAPETVDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H + + W VD GE RI + VN + + V G G+ Sbjct: 185 AQH--VAISHISADTGRPRPWDYLVD---GETRIVQMCGTVAVNDADTYIACGVAGIGLI 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+ + L ++ D TP + YP KLK F +++ Sbjct: 240 KTSLYLVEPYLKSGRLREVLTDFNTPPRPISILYPPNRHTPVKLKVFVDWL 290 >gi|86356001|ref|YP_467893.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280103|gb|ABC89166.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V +GS + AA +L LS+S +S +++ LE +G L +R R L LTE G+ Sbjct: 5 EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLALTEDGAV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++E ++ E SG +RIA + G+ L L FL +PDI++ Sbjct: 65 FLERAGRIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLTAHPDIRLT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D++ +D + D D IR P+ S L+ KL A+P YL P S+ + Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCASPDYLARQGMPRSLAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H I + + + + D+ + T + I L +N+ + + G GIALLP Sbjct: 184 LNNHRGIFYTN---RGVADWRF-QTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239 Query: 246 DYIVKDNPNLVRIME-DVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I R+ E DV + +Y +P + KL+A + + Sbjct: 240 AFIAGPAIREGRLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287 >gi|254502247|ref|ZP_05114398.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222438318|gb|EEE44997.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 293 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 130/262 (49%), Gaps = 10/262 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G AA++L L+ ++++R+++ LE +G +LF R G LT+ Sbjct: 1 MNWDDIRIFLGVARTGQILAAAKRLGLNHATVARRLTALEGSLGARLFDRSTSGCVLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS+ + + +L + + + SG +RI G L L +P + Sbjct: 61 GSRFFDRAEMMEAAALAAEADLGDDTPEISGTVRIGAPDGFGVAYLAPRLGLLTRQHPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL+ ++ +S AD A+ + +P ++ LI KLV + YA+ YL P + Sbjct: 121 TVQLVPVSRSFSLSRREADIAVTIERP-ETGRLIAGKLVDYALGLYASKTYLMERGIPET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H+LI + +ED + A+++ + + ++ S L + G+G Sbjct: 180 PSDLSAHDLIGY-------VEDLLYSASLNYGAEFFKGWTARFEIASALGQTEAVKAGAG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDV 262 I +L D+I + +P LV I+ D+ Sbjct: 233 IGILHDFIARADPCLVPILPDM 254 >gi|186476128|ref|YP_001857598.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184192587|gb|ACC70552.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 300 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 137/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA+ ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIETFVTVAARGSLSAAAQAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTYEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + VK SG LR++ G+ + + F + +PD+ I L Sbjct: 66 LEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSISL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + + SSL+ KL A+P YL P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAIRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRAAPQTLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 HN + G + W+ + ++S ++ + + ++C+ G G+A Sbjct: 185 AHHNCLALG---ASANQQRGWVFQQGDKVVTIKVSGTMECSDGAVLHEWCLEGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + +LV ++++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGSLVSVLDNHAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|90412854|ref|ZP_01220854.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90326213|gb|EAS42640.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 14/297 (4%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M +++L+ VF + GSF+ AA QL LS+ +S + LE +G+ L R R + Sbjct: 1 MDVSFEQLKSMVVFAKIVEQGSFSAAARQLGLSRGVVSYHLKKLEDHIGMPLLNRTTRSI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT+ G + + + + ++++ +P GKL I+ +++ + + L F Sbjct: 61 SLTDAGQRYFQRCKRISEEAAAANLQIENLREEPEGKLTISAPVNISMHTIVPALNTFKT 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYP I+I L L + ++I + D AIR P+ S L +KL+T+ +PHY Sbjct: 121 LYPKIEIDLNLTDDIVNIIQEGVDLAIR-GAPLADSGLYAKKLMTMKNILCGSPHYFNQH 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + EL H + + K L R + NS + + V Sbjct: 180 GIPRTPAELANHEWVVY-----KKTSKIQTLTKGTRSYNVKMQGSITTNSASARTAFVVG 234 Query: 238 GSGIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP Y ++K L I+ED T+Y YP N+ K++ +++ Sbjct: 235 GHGVGRLPIYDALPLIKAG-QLTPILEDYELSDITIYGVYPPRAANSKKMQLLLDYL 290 >gi|148545328|ref|YP_001265430.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148509386|gb|ABQ76246.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 295 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 10/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L+ + S+++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + ++ P GK+R+ T +G + YP + Sbjct: 62 GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + LI RKL + YA+ YL + Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLRN 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H+ I + D + E L ++ P + + S ++ G GIA Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQAAARAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +LP+Y+ + +P LVR++ + I S+ + C L + +L+ +++ Sbjct: 235 VLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282 >gi|167582358|ref|ZP_02375232.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S+V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGLTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHQPVNYASPSNGRIAPWEWVEGDAVRRVALRGRVT---VNSAEAYIACCLSGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ + + YP + + + F ++ Sbjct: 241 IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWL 290 >gi|205353853|ref|YP_002227654.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273634|emb|CAR38623.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628963|gb|EGE35306.1| putative LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 310 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 19/294 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 13 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 73 YQKGVNLLNAAKNLQDEVRSSHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 132 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239 E + +P + W T + + + + V+S S+M + + GS Sbjct: 187 LESLAQAEWIIHERLPTPLR---WSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGS 243 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ALLP ++V ++ L+ ++ D P +Y YP+A T K++AF +F+ Sbjct: 244 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVTTKVRAFIDFL 297 >gi|187919739|ref|YP_001888770.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718177|gb|ACD19400.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 148/303 (48%), Gaps = 24/303 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D L F +A SGS T AA +L LS +++S+ ++ +E+ + L R R ++LT Sbjct: 4 SIQPDDLAFFSTLAASGSLTAAARELGLSTAAVSKHLAQMESRAAVSLVNRTTRRMSLTP 63 Query: 62 QG----SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +G ++ R+ SE+ + Q+ L S P G LR+ T+ G++ + + F+ Sbjct: 64 EGELYLTRARRILSEMD---DLAQL-LGGSQAAPKGLLRVNATLGFGRSHVAPLISRFVR 119 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P++ +QL L +S D D +R +P + +I R++ + A+P YL Sbjct: 120 RFPEVDVQLQLSVDPPPLSDDAFDVCVRFGEP-PDARVIARRVASNRRLLCASPRYLAER 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI----- 231 R P S EL +HN I I + + + W T R E + ++V L+ Sbjct: 179 RAPRSPAELAQHNCIG----IRQGGDAYGVWRLTSGRGAAE-KTETVRVRGNLTTNDGEI 233 Query: 232 -MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 +++ + G GI + ++ + + + LV ++ + TP +Y YP+ L+ T ++KAF Sbjct: 234 AVKWALDGQGILMRAEWDIAEYLADGRLVHVLPEYRTPGADIYAVYPQQLQMTARVKAFV 293 Query: 288 NFI 290 + + Sbjct: 294 DML 296 >gi|254180243|ref|ZP_04886842.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|184210783|gb|EDU07826.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRIALRARVT---VNSAEAYIACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|311103237|ref|YP_003976090.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310757926|gb|ADP13375.1| bacterial regulatory helix-turn-helix protein, LysR family protein 1 [Achromobacter xylosoxidans A8] Length = 307 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 8/299 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA + LSQ+++S+ IS LE + LF+R +R +TLTE G Sbjct: 6 DLEGWAIFAKVAETGSFAKAAAEFSLSQATVSKSISRLEARMKTTLFHRTSRSMTLTESG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + E+ E S GK+R++ + G L L F+ PD+ Sbjct: 66 YAALERAARILEEGEAVESEVTEKSSSLRGKIRLSAPMSFGVTHLAPMLPPFMQANPDVA 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +K D+ + D A+R+ + S+L+ R+L ++ + AP Y K P Sbjct: 126 LEIEFSDKQADLVSERFDLALRISN-LVDSTLLARRLCSVRILLVGAPSYFKRAGRPKHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L H + + + + + + + L VN+ ++ G G+AL Sbjct: 185 KDLAHHTALQY--MYARNGSSWRFRHEKHGDFSQSLPVHLNVNNAEALTPALQAGMGLAL 242 Query: 244 LPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDW 297 P+++ KD + L +M+D ++ P + +++AF ++ L A W Sbjct: 243 QPEFLAWKDLQSGALETVMDDWQVDPIALHIVTPPGRRRPARVQAFIEYLAERLTAEPW 301 >gi|293413542|ref|ZP_06656191.1| LysR-like transcriptional regulator [Escherichia coli B185] gi|291433600|gb|EFF06573.1| LysR-like transcriptional regulator [Escherichia coli B185] Length = 308 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|170683778|ref|YP_001742431.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5] gi|301020070|ref|ZP_07184200.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|170521496|gb|ACB19674.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5] gi|300398947|gb|EFJ82485.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|323976224|gb|EGB71317.1| LysR substrate binding domain-containing protein [Escherichia coli TW10509] Length = 308 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|146308586|ref|YP_001189051.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576787|gb|ABP86319.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 317 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 147/295 (49%), Gaps = 8/295 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D ++ F VA GS + AA+QL +++S +S+++S LE +G +L +R R + T Sbjct: 14 MKLDIQEIETFLRVAELGSVSLAAQQLGVAKSVVSKRLSDLERNLGARLLFRSTRKVAPT 73 Query: 61 EQGSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 + G + + +L++ + ++ S+ +G LRI + G L L EF+ Sbjct: 74 DSGQRFYHQAKAALAELQSAAEAVAFEDGSL--AGSLRILAPMSFGTLWLAPRLAEFMRQ 131 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P +++ L LD++ D + D +R+ + + S LI R+L + +P Y++ Sbjct: 132 HPQLELALQLDDRVSDFEREGYDLCLRISR-LHDSVLIARRLGSSPRVVCCSPDYIREHG 190 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P +++L +H I + +L + F+ A RP+ N+ ++ + G Sbjct: 191 APGRLEQLLEHPCIGYCNLSAGQLWSFDDPADPQRPLTLAAGGRFTSNNGEAMRDAALAG 250 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A+LP +IV+ + LV+++ ++ ++ YP A + + K++A +F+ Sbjct: 251 LGVAVLPRFIVQRDLQAGRLVQVLAEIRPTDDQIHALYPRARRASPKVQALCDFL 305 >gi|190573113|ref|YP_001970958.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011035|emb|CAQ44644.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 291 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 24/294 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA GSF AAEQL +S + + I LE +G L R+ R LTE GS Sbjct: 7 MQAFVAVAECGSFAGAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAGSAYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +++ + ++ V+P G LR++ G +L L L P + ++L Sbjct: 67 AGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPTTWGSCVLAPQLAGLLRAQPQLNVELD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ D D AIR+ P+ S ++ R L M AAP YL+ P + +L+ Sbjct: 127 LSNRRVDLIEDGFDVAIRV-GPLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTPADLE 185 Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 H+ C+ W LA ++ E R++C N +++ + V G+G Sbjct: 186 GHD----------CLSHLAWRGGHGWQLANGEQVDWEARLTC---NDGVALREAAVAGAG 232 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + L P ++ L ++ D + ++ Y + +L+ F +F+ Sbjct: 233 LVLQPTALLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVM 286 >gi|170699264|ref|ZP_02890314.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170135818|gb|EDT04096.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 18/302 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L+L+ SS+ R + LE +G L R R +TL++ G+ Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLNLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ L + + +PSG LR++ + G + + ++ FL YP + + Sbjct: 64 VYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPHVGAFLARYPRLDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + +D+ D AIRL + S+ ++ R+L T + A+P YL P + Sbjct: 124 DLQLTDARVDLVTGRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPSTPG 183 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240 EL H + F GD D + V ++ +++ +++ L G G Sbjct: 184 ELVDHGCLRFHFGGDQQAWSFVDAHGATKV-------LVTGRLKSNHSEVLRAAALDGGG 236 Query: 241 IALLPDYIVKDN---PNLVRIME--DVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293 IALLPD+++ + L R+ E DV+ + V Y + + ++ AF +F+ + Sbjct: 237 IALLPDWLIDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQ 296 Query: 294 AR 295 AR Sbjct: 297 AR 298 >gi|167031092|ref|YP_001666323.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166857580|gb|ABY95987.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 295 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 10/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L+ + S+++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + ++ P GK+R+ T +G + YP + Sbjct: 62 GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + LI RKL + YA+ YL + Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLHRAPPLRN 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H+ I + D + E L ++ P + + S ++ G GIA Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQAAARAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +LP+Y+ + +P LVR++ + I S+ + C L + +L+ +++ Sbjct: 235 VLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282 >gi|121611523|ref|YP_999330.1| LysR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121556163|gb|ABM60312.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae EF01-2] Length = 314 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + F V GS + AAE + LS S SR ++ LE +G +L R R L +T+ G Sbjct: 4 WTEYEFFVRVVELGSLSKAAEAMGLSNPSASRHLAALERRLGARLIERSTRRLFVTDVGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ + ++ P G LR+ ++ L + L F YP+I++ Sbjct: 64 DFYRCCKRALDDMQEAVEAVNATTSNPVGVLRVTASLSLSMQHIAPLLPAFAQRYPNIRV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +++ N+ DI + D A+R R+ SSL+ R L T +P YL+ P + Sbjct: 124 KVVAANRYYDIIDNNIDVALRTRESEPDSSLVIRSLATTRRVLAVSPAYLERHGAPRHPR 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +H L+ + P + D + P L+ N + V G GI + Sbjct: 184 ELAEHRLLLYTYHAPDSLT----FQRGDEAVTIPTKPMLEANDGQVLRVAGVQGLGIMVQ 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y++ D+ L+ +M D P +V Y K +AF +F+ Sbjct: 240 PMYVIYDDLVADRLIPVMTDWKLPPMSVNIVYQHRRLVPAKTRAFIDFL 288 >gi|182677955|ref|YP_001832101.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633838|gb|ACB94612.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 308 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F V +GSF AA +L ++ ++S+ + LE G +L +R +R +LTE G Sbjct: 5 DLEAWAIFAKVVETGSFAAAAAELGITGPTVSKALGRLEARFGERLIHRTSRRFSLTETG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +++ + E + E Q S P GK+R+A + G + L EFL +YP++ Sbjct: 65 RVLAIRAAQILAEGEAIEAEAQAKSATPRGKIRLAAPMSFGLRHVSPVLPEFLAMYPNVS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L LD++ +D+ D A+R+ + SSL+ R+L +H P Y + PL Sbjct: 125 IDLQLDDRMVDLVASGIDVALRIAD-LPDSSLLARRLCPVHRWVVGTPSYFERHGTPLRP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H +++ L+ + F V+ + R+S + + ++ G GIA Sbjct: 184 RDLASHACLSYNYLMSGEIWHFKDTKGVEESVSINARLSSNNAEALCASLEA---GEGIA 240 Query: 243 LLPDYIV 249 L PD+I Sbjct: 241 LQPDFIA 247 >gi|115360572|ref|YP_777709.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285900|gb|ABI91375.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 18/302 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L L+ SS+ R + LE +G L R R +TL++ G+ Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ L + + +PSG LR++ + G + + ++ FL YP + + Sbjct: 64 VYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPHVGAFLARYPRLDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + +D+ D AIRL + S+ ++ R+L T + A+P YL P + Sbjct: 124 DLQLTDARVDLVTSRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPSTPG 183 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240 EL H + F GD W R + ++ +++ +++ L G G Sbjct: 184 ELVDHGCLRFHFGGD-------QQAWSFVDARGATKVLVTGRLKSNHSEVLRAAALDGGG 236 Query: 241 IALLPDYIVKDN---PNLVRIME--DVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293 IALLPD++V + L R+ E DV+ + V Y + + ++ AF +F+ + Sbjct: 237 IALLPDWLVDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQ 296 Query: 294 AR 295 AR Sbjct: 297 AR 298 >gi|206577520|ref|YP_002240310.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|290509921|ref|ZP_06549291.1| HTH-type transcriptional regulator yafC [Klebsiella sp. 1_1_55] gi|206566578|gb|ACI08354.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|289776637|gb|EFD84635.1| HTH-type transcriptional regulator yafC [Klebsiella sp. 1_1_55] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 144/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++ +F V SGSF+ AAEQL + S++SR + LE+++G+ L R R L+LT Sbjct: 1 MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + +L E+ P G LR+ + + L +K F YP Sbjct: 61 EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H+ + F + P + W ++ D + E S + NS ++ Q C+ G+ Sbjct: 180 QHPSDLKQHHCLGFTE--PVSLN--TWPVSCCDGQLLEIE-SAVSSNSGETLKQLCLTGN 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY+V + V ++ D P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMVDKEIASGEFVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|213161746|ref|ZP_03347456.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213585908|ref|ZP_03367734.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648332|ref|ZP_03378385.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213861326|ref|ZP_03385796.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829414|ref|ZP_06547026.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|197337872|ref|YP_002157632.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197315124|gb|ACH64573.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 300 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++AR G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LTE G + Sbjct: 11 IRSFVLIARLGNFTKAAETLDVSRSHVSRQISSLEKQMGVTLLIRTTRTLRLTEAGKHFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + K G+++I LG+ L + F+ YPD+ I L Sbjct: 71 HQCEQALHTIDQALLSAVDDVEKVQGEIKINCVGGYLGEVFLADIVNAFMQQYPDVSISL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ ++ S + +KL+ I M A+P YL+ P +EL Sbjct: 131 DFSSNRVDLIEEEFDIAFRM-GSLEDSGFVAKKLLDIEMGTLASPKYLQQYGRPSHPKEL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H+ +T + +++ + V++ + I LQ + ++ + G+GI +P Sbjct: 190 QQHHCLT------GSVRKWHFQSLVNKEHYDVSIKGNLQCKNGRVLVAGAIAGNGIIRVP 243 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D+ LV++ E+ P+ Y +++ F +F+ Sbjct: 244 LIYCQQELDDKKLVQVFEEWGIPTVDFSAIYHRDRYQPKRIRTFIDFV 291 >gi|158337296|ref|YP_001518471.1| LysR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158307537|gb|ABW29154.1| transcriptional regulator, LysR family [Acaryochloris marina MBIC11017] Length = 302 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 34/306 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D L++F V R GSF AA ++ SS+SR I+GLE E+ ++L R R L+LTE Sbjct: 1 MDISVLKLFVDVVRQGSFAGAARDRNIDPSSVSRAIAGLEKELDLRLLQRTTRQLSLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSV-------KPSGKLRIATTIDLGQNLLQGNLKEF 115 G + ++E ELQ++S +P G+LR+ + G + L +F Sbjct: 61 GKTY-------FERIEPLIEELQQASEIAADVVGQPKGQLRVTVSASFGLKCIVPLLPQF 113 Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 LYPD+ + L+ + D+ ++ D AIRL ++ S+LI ++L+ A+P YLK Sbjct: 114 EQLYPDLTVNLLFSDAVEDLLLNRIDVAIRLGL-LRDSTLIAQQLMQTRYRVCASPDYLK 172 Query: 176 NCREPLSIQE-LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQ 233 P+++ E + HN + F P WL + E I V S +Q Sbjct: 173 QS-PPIAVPEDIADHNCLRF----PLAGFQSQWLFKDAQGTLTEVPIHGNTVISNGIALQ 227 Query: 234 YCVLGS-GIALLPDYIVKDNPNLVRIMEDVITPSFTV---------YFCYPEALKNTGKL 283 CV+ + G+ALLP++++ ++ +++ + P++ V +F YP KL Sbjct: 228 QCVIANMGLALLPNWLINEDLRTGTLVD--VLPAYEVTGTDFSTAAWFVYPSRCYVPLKL 285 Query: 284 KAFRNF 289 + F F Sbjct: 286 RVFIEF 291 >gi|307293155|ref|ZP_07573001.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] gi|306881221|gb|EFN12437.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] Length = 292 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 142/297 (47%), Gaps = 24/297 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDWD LRVF VAR+ AA L + ++I+R+++ LE +G +LF A TLT Sbjct: 2 FDWDDLRVFLAVARTRKIAPAARALGIDATTIARRLARLERTLGPELFEMGAGERTLTAH 61 Query: 63 GSK-LHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLL 117 G LH S +E+ + E + SG++R++ G +L L +F Sbjct: 62 GQVLLHHAES-----IESAALAAMEEATGREHHLSGQVRLSVAEGFGTWVLAPGLADFSR 116 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P I++ LI + ++ S AD A+ L +P Q L R++ +H YA+P YL Sbjct: 117 RHPGIRLDLITASGFLNPSKREADMAVMLARP-QRGRLSVRRMGDYRLHLYASPAYLAQA 175 Query: 178 REPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P S L H L+ + +P+ + + ++L V+ + E + +N MQ+ Sbjct: 176 GAPGSTAALRGHVLVGY---VPEFIFSPELDYLDEVEAGL-EASLRATSIN-----MQHR 226 Query: 236 VL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ G+GI +LPD+I + LV +M D + + + LK ++ A ++ Sbjct: 227 MIAEGAGIGVLPDFIAGRDSALVPVMADRVEIMRSFWLVTHGDLKKLPRIAAVAQWL 283 >gi|187922312|ref|YP_001893954.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713506|gb|ACD14730.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 367 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ + + N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|15964478|ref|NP_384831.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307308421|ref|ZP_07588125.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307318984|ref|ZP_07598415.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|15073655|emb|CAC45297.1| Probable HTH-type transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] gi|306895398|gb|EFN26153.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306901024|gb|EFN31632.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 293 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +RVF VAR+G A+++L ++ +++SR+++ LE E+ KL R G LT + Sbjct: 1 MNWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q ++ +G +RI G + L L YP++ Sbjct: 61 GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++QL+ + +S AD AI + +P Q L+ KL + YA+ YL P + Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQ-GRLVSSKLTDYTLGLYASAEYLGRYGTPGT 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L H I + DLI N+ V R + +++S + + +GI Sbjct: 180 VDDLKNHRRIGYVEDLI--FTPSLNFSTEVMRSWD----ASFEISSAMGQTEAVRSSAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L +YI + P LVR++ D T + Y E+ ++ +++ F+ Sbjct: 234 GILHNYIARQYPELVRLLPDR-TIRRAYWTTYHESARDLVRVRTVAAFL 281 >gi|296116043|ref|ZP_06834663.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295977397|gb|EFG84155.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 24/304 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F ++A +GS A + +S +++SR++SG E +G +L R +R LT +G +LH Sbjct: 8 LKFFCILAAAGSIAGCARVMGMSPAAMSRRLSGFEARLGTRLVTRTSRHFALTAEGQRLH 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H++E + E+ + P G LR+ +LG+ +L G + F+ YPD+ + L Sbjct: 68 ERATRIMHEIEEAEAEVTAKAGIPHGVLRVGVPSELGRKMLAGIVAAFVEKYPDVTVHLT 127 Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L + +D+ D D AIR P + +++LI + V A+P Y P + Sbjct: 128 LSDAGLDVIDDGLDIAIRAGMPPDQDVMTTTLISSRRVVC-----ASPAYSVRKGLPATP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238 +L KH+ I + + FN A D G+ R L +S + + V G Sbjct: 183 HDLLKHDCIC----LLRRQRIFNEWAYYD---GKTRKEIHVTPHLAASSSEVVHDWAVSG 235 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT-VYFC--YPEALKNTGKLKAFRNFIFLKAR 295 GIAL + + D+ R++E + ++ V C YP +++ F +F+ R Sbjct: 236 QGIALKVLWDIADDLKCGRLIECLSAYAWEDVVLCAIYPSRTHLPPRVRFFLDFVKRALR 295 Query: 296 DWKF 299 F Sbjct: 296 QHDF 299 >gi|288550300|ref|ZP_05969910.2| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] gi|288315708|gb|EFC54646.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] Length = 297 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AA+ L+L +++S+ + LE +G++L +R R + T +G + Sbjct: 3 MRAFTRVVETGNFTRAADSLNLPNATLSKLVKSLEAHLGVRLLHRTTRRVVATPEGQDYY 62 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S V +E +P G LRI + +L L +FL YP+I+I L Sbjct: 63 EKASRVLIDIEEIDTSFSALQSRPKGYLRIDVGGSTAREVLIPALPDFLQRYPEIRIDLG 122 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ +D+ DC IR + SSLI R + M A P YLK P EL Sbjct: 123 VSDRPVDLISGNVDCVIR-GGTLDDSSLIARHIGDAPMVTCATPGYLKAAGVPAYPDELR 181 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 + H L+++ L P F + V+ + E + + +N + + + G GI Sbjct: 182 NGHKLVSY--LSPLTGRAFPFRFIVEGEMRELKTQHHIGINESNAHLAAAMAGMGIIQTF 239 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y KD N LV I++ S+ Y YP+ T +L+ F ++I Sbjct: 240 YYAAKDELNNGTLVEILQAWRPASYPFYVVYPQNRHMTHRLRVFIDWI 287 >gi|197262558|ref|ZP_03162632.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240813|gb|EDY23433.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 19/294 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239 E + +P + W T + + + + V+S S+M + + GS Sbjct: 180 LESLAQAEWIIHERLPTPLR---WTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGS 236 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 237 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|330960843|gb|EGH61103.1| LysR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 14/295 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTGAAQACSISTTMVGNHLRSLEQRLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ EV + ++ +++ P+G LR+ + G LL L EF +P++++ Sbjct: 64 AYYQRCLEVLGLVAQSEQLAEQAQGDPTGTLRMTAPLTFGSELLAPALVEFSRRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL QSS LI R L + AAP YL + P+ + Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIAQSSPLIARPLQDYTLTICAAPDYLAHHGAPVRPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +L HN + F P E W T P GE + + N+ + Q Sbjct: 184 DLRSHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDIDGSMVANTSAGLYQAARA 239 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G G+ +LPD +V+ + LV ++ P + Y + KL++F F Sbjct: 240 GLGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294 >gi|264679397|ref|YP_003279304.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262209910|gb|ACY34008.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 300 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 18/297 (6%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR+ F VA + +F+ AA+ LHL+ ++S QIS LE+ +G++LF+R R + LTE Sbjct: 2 DRLRLITTFMNVAEAENFSRAAQSLHLTPQAVSLQISQLESWLGVRLFHRSTRRMALTED 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + EL++ + +G +++A+++ LGQ L+ L +F YPDI Sbjct: 62 GRVFYERCRVGLQSIDQGERELRDRASGITGSIKVASSLSLGQLLVAPLLAQFNESYPDI 121 Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I+L+ N +D+ MD P+ + SL+ R++ AAP YL Sbjct: 122 RIELVTQNPWPDTVDLGMDIGVIG----GPLLNVSLVARRVGRFTHMLCAAPAYLAAKGT 177 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P S QEL +H I G P+ + W +T + + EP S + + + Q + Sbjct: 178 PKSPQELLQHCCI--GLRHPRTNRIWPWTFQSTRRQTMLEPPFSFITQDPAVQ-RQLVLQ 234 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+GI L DY + LV + P V+ P+ ++K +F++ Sbjct: 235 GAGIGQLTDYFAGPLIASGALVELPLGYSGPRLDVHVFIPQREHTPRRIKLLNDFLY 291 >gi|329295686|ref|ZP_08253022.1| LysR family transcriptional regulator [Plautia stali symbiont] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 22/279 (7%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V GSF AA +L S S+ +S LE ++G++LF R R L+ TE G + Sbjct: 8 RMFVAVLEVGSFAGAAARLGTSSGQASKLVSRLEQQLGVQLFKRSTRALSPTEIGRAYYE 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + +QE++ P+G+L+I+ G +L L F YP I++ + Sbjct: 68 RVKTLLETFDALDATVQENARSPTGRLKISAPGTFGTAVLASVLVAFARHYPLIELDVNF 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ ++I + D AI + K + SSLI R+L + + AAP YL P ++L Sbjct: 128 SDRAVNIVDEGFDMAISIGK-LDDSSLIARRLGEVPIRLAAAPGYLLQHGTPQHWRDLAT 186 Query: 189 HNLITFGDLIPKCMEDFN----WLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 H +C+ D N W P G+ P L ++ + +Q + G G Sbjct: 187 H----------QCISDTNFRDPWHWPFVTPFGDSVSMPIRGRLCFSNTEACLQAALAGLG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276 IA LP +I +V ++ED P+ ++ YP A Sbjct: 237 IARLPGFIAAPALQRGEIVTLLEDFAPPAMGLFALYPPA 275 >gi|295676303|ref|YP_003604827.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436146|gb|ADG15316.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 302 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 11/292 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V GSF AA+ L S ++++R ++ LE +G +L R +R L+LTE Sbjct: 2 DRLRAFEVFVTVVNRGSFARAADALETSPANVTRYVNDLEAHLGARLLNRTSRRLSLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + + T+ + +S++P G+LRI + G L F+ YPD+ Sbjct: 62 GETLYSRCKAILEDVAETEGLVSTTSIEPRGRLRINAPVSFGIQHLAPLWPRFMQQYPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +DI + D AIR+ + + RKL T A+P YLK P + Sbjct: 122 ELDITLIDRVVDIVEEGFDLAIRISR-AGTVDHAARKLATSTNILCASPDYLKRWGHPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +L H I + D L D +SC + N+ + + G G+ Sbjct: 181 PLDLLGHQCIGY---TYAATADLWQLIDKDGKTHAVEVSCQMHTNNGDTARAAALAGHGV 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +++ ++ L+R++ D P V YP + K++A +F+ Sbjct: 238 IWQPTFLIGEDLRAGRLLRVLPDYRLPDIDVLALYPSRRHVSAKVRAAIDFL 289 >gi|119773717|ref|YP_926457.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B] gi|119766217|gb|ABL98787.1| transcriptional regulator, LysR family [Shewanella amazonensis SB2B] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V RS F+ AA + + +S+ISR+++ LE E+G++L R +R L+LT+ G Sbjct: 3 DLNGMALFAAVVRSQGFSQAARDIGMPKSTISRKVAQLEEELGVRLLQRDSRNLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + ++LE + ++ + SG LRIA + Q L+ FL LYP ++ Sbjct: 63 TLFYQHCETIVNELEAAKAVIEHTHADVSGSLRIAIPVSFSQELIANLCSGFLRLYPSVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D+ + + D AI+ P+Q S + R L A+P YLK P + Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKY-GPLQPSDNVARLLFERQPILVASPGYLKKHGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +EL +H I G + P + + +R + +VNS + + Q + Sbjct: 182 KELGQHAGILLGTTRSAPIWPLGKGGRKTMVSFNRKV--------RVNSAVMVRQLALDD 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA+L K + +L+ I+ + F VY Y + + F +F F+K Sbjct: 234 FGIAMLSHAQCKKDLASGSLLPILPEWPMEPFKVYGVYSSRKQLATNISVFLDF-FIK 290 >gi|307297154|ref|ZP_07576967.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] gi|306877378|gb|EFN08609.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] Length = 298 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 129/276 (46%), Gaps = 16/276 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L F VA + SFT AA L +S + +SR + LE + +LFYR R + LT+ G Sbjct: 4 WEGLDEFMAVAAASSFTGAARSLSVSTTHVSRAVMALEQRINAQLFYRTTRTVRLTDTGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E +P+G+LR+ + +G+ + ++ F + +P + + Sbjct: 64 VFLEQCRRIAAETDEAIAHIAEQG-EPAGELRVTCSTAMGERYVAPLIRRFAMHHPRLSV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ +D+ + D AIR I LI+ ++ + ++ AAP YL P +++ Sbjct: 123 SIELTNRVVDLMTEDFDLAIRT-GTISDPRLIKTRIASRRLYTCAAPDYLARAGRPTTVE 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 E+ H I G + + RP G R C NS +++ CV G GI L Sbjct: 182 EIGAHECI--GGTSGSWHFKVDGVEVAHRPSG--RFRC---NSGHAVVDACVAGLGICQL 234 Query: 245 PDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPE 275 P++ V P+L I+ED ++ YP+ Sbjct: 235 PEFYVL--PHLQHGMVELILEDCRPDDEPIWAVYPQ 268 >gi|170750184|ref|YP_001756444.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656706|gb|ACB25761.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 302 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 131/288 (45%), Gaps = 9/288 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD LR F VAR+G+ + A + +++ R+I LE +G +LF+R G LTE G Sbjct: 7 NWDDLRFFLAVARTGTLSAAGARTGTEHTTVGRRIRALEEGLGARLFHRSNLGYALTEDG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L V +E + E++ SG +RI G L + +P ++ Sbjct: 67 ANLLGV-AEAMESAFLSASAATEAAQTVSGTVRIGAPDGFGSVFLAPRMHRLTARHPGLE 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++++ + +S AD I L P Q + ++ R+L + YAA YL + Sbjct: 126 VEIMATARIFSLSKREADIVISLSGP-QQARVVARRLTDYRLLVYAAETYLAGAAPIAEV 184 Query: 184 QELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H + + D++ + N+L +G P + L+ + L+ + + G+G+ Sbjct: 185 GDLSGHPFVGYIEDML--FTRELNYLGA----LGPPVSARLRSTNLLAQVHATLGGAGLC 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP +I +P LV ++ + + + + E + ++A FI Sbjct: 239 VLPAFIAAAHPGLVPVLPGAVALTRSFHMHIHEDHRKAAHIRAVAGFI 286 >gi|209547992|ref|YP_002279909.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533748|gb|ACI53683.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 293 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 13/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + +G +R+ G + L + + +P + Sbjct: 61 GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L +P Q L+ KL + YA+ YL + P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRDYLASRGTPSD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239 I+ L H I + +ED + A+++ GE S ++++ + + G+ Sbjct: 180 IEALKAHPRIGY-------VEDLIFTASLNFS-GEVMRSWDASFEISTAIGQTEAVRSGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +L DYI + P L RI+ D I+ + Y E ++ ++++ +F+ Sbjct: 232 GICILHDYIARQYPELQRILPD-ISIRRAYWTTYHETARDLVRVRSVVDFL 281 >gi|148653255|ref|YP_001280348.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572339|gb|ABQ94398.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 9/272 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR VF V GSF+ AA QL ++ S++S+QI LE ++G+ L +R R L+LTE Sbjct: 4 DNLRGMAVFASVVGHGSFSGAARQLGITTSAVSQQIRSLEKDLGVVLLHRSTRKLSLTEA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + +V + +I++ + + +G LRIATT +LG N + L ++ + D+ Sbjct: 64 GASFYESAKDVVTAADQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHDDL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + DN ID+ + AD AIR+ I+ SS+ L + A+PHYL+ + Sbjct: 124 SIYFLADNHYIDMIDERADIAIRMSPQIKDSSVATYPLAEVKQMLVASPHYLRQHEKITK 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 ++L H LI+ + DF+ + T + +I+ +Q N+ G G+ Sbjct: 184 PKDLANHQLISIDLMKDPNTLDFSSIETGKK--NRVKITSRIQTNNVFLATTLAKEGHGL 241 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270 + V+ + LV ++ + P F +Y Sbjct: 242 VRVMSLDVQKELASGELVEVIPEYSLPHFVLY 273 >gi|70730132|ref|YP_259871.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344431|gb|AAY92037.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 302 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 138/285 (48%), Gaps = 12/285 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA GSF AAE+L+L+ S++S+ I+ LE + +LF R R L LT+ G+ +R Sbjct: 12 VFVCVADCGSFKAAAERLNLTASAVSKAIARLEGRLQARLFQRTTRSLALTDAGTAFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S V LE ++ L + + G++RI G++ + G + F +P +Q + Sbjct: 72 CSGVLADLEEAELALNAENSELRGRVRIDLPGTFGRSQVLGAVLRFAREHPGLQPHITFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188 + ++ AD A+RL Q + + + + H + A+P YL++ PL+ Q+L++ Sbjct: 132 DPGVEPLEAGADIAVRLGGSGQWPAALGHRCLGREWHLFCASPDYLRSHGVPLTDQDLER 191 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIALL 244 H I +G + + W RP R SC+ V ++ G GIA L Sbjct: 192 HQCIAYGWVDGRVSP---WNFASGRPGESERRVMSASCV-VGDGEGLLMAVQQGYGIAQL 247 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P ++VK ++ +LV ++ + ++ + ++ + K+ A Sbjct: 248 PSWLVKRQLEDGSLVEVLPQWASEGQAIHLLWLKSRQGLPKVSAL 292 >gi|330504498|ref|YP_004381367.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918784|gb|AEB59615.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 302 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 141/292 (48%), Gaps = 5/292 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GSF AA+ L L S+++ I LE + ++L R R ++LT +G+ Sbjct: 7 MQVFVRVAEVGSFIKAAQTLALPASTVTSSIKNLEKYLQVRLLNRTTRRVSLTHEGACYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E T+ L +S+ +P G+LR+ + ++ NL++F YP+I + + Sbjct: 67 AQCREILTLIEHTESSLTDSAKRPQGRLRVDMPGGIAHFIVMPNLQDFYRRYPEIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D+ + DC IR + + S+LI R L A+ YL+ P ++L Sbjct: 127 VNDRQVDLVQEGVDCVIRTGE-LNDSTLIARPLGHFRWVTCASKAYLRENGTPQVPEDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I + + + D ++ A + P VN ++ C+ G G+A L + Sbjct: 186 HHRAIHYFSGRTRRVGDMHF-ARGSEKLSVPVKGTAAVNETGLYIKMCLEGFGLAQLAER 244 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IV + + LV ++ D PS V YP + ++ F +++ + RD Sbjct: 245 IVSEHLQDGRLVEVLPDWQPPSVPVNLLYPHQRFLSPAVRVFADWVSMLIRD 296 >gi|295676622|ref|YP_003605146.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436465|gb|ADG15635.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 317 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 18/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 13 IELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDAGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E+ P+G LRI+ G + L F YP ++++ Sbjct: 73 EQCRQALSQLMDAEREVTGEQTTPAGVLRISMPTPYGHYRVLPLLPAFRKRYPQVRVETH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P S+L+ RKL M A P YLK P +I++L Sbjct: 133 LSNRNIDFADEGFDLAIRGRAPA-DSNLVARKLEDAEMVVVATPAYLKRAGVPKTIEDLQ 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSY------LSIMQYCVLGSG 240 H I F +P W T + G P L SY L+ + G+G Sbjct: 192 AHECIQFE--MPSSGRHLAW--TFE---GSPENADVLTRGSYGTSGDALAGVTLARAGAG 244 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++V D+ LV ++ + + YP A T +++AF F+ Sbjct: 245 LFQTYRFVVADDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVEFL 297 >gi|298293129|ref|YP_003695068.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296929640|gb|ADH90449.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 131/255 (51%), Gaps = 20/255 (7%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SKLHRVTSEV 73 GSF+ A +L LS S++S+ ++ LE +G +L R R + LT +G ++ R+ E+ Sbjct: 18 GSFSAAGRRLGLSPSAVSKLVTRLEERLGTRLLVRSTRAIMLTAEGEAYVARARRILGEI 77 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 E + ++ P G+LR+++T+ G+ + + EFL LYP++Q+ L L ++ I Sbjct: 78 D---EAERFIAAGAAAAPRGRLRVSSTVGFGERCVVPRVPEFLALYPEVQLDLSLTDEVI 134 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ + AD +R P++ SSL RK++ A+P YL P + Q+L HN + Sbjct: 135 DLVAERADIGLRA-GPMRDSSLKARKMLESRRVIVASPAYLARHGRPHTPQDLAGHNCLR 193 Query: 194 FGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 F + +D+ + VD GE P L+ NS + + + G GIA + Y+ Sbjct: 194 FN--FRRSQDDWPF---VDPASGEGYALPVSGNLEGNSGSMVQRLALDGLGIARIARYVA 248 Query: 250 KDN---PNLVRIMED 261 + + LV ++E+ Sbjct: 249 ERDIGAGTLVEVLEE 263 >gi|229589145|ref|YP_002871264.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361011|emb|CAY47873.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 136/296 (45%), Gaps = 8/296 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + V+ V +GS T AA+ +S + + + LE +G+ L R R +LTE G Sbjct: 4 FQAMSVYVKVVEAGSMTAAAQACGMSTTMVGNHLRALEQRLGVSLLKRTTRKQSLTEFGG 63 Query: 65 KLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ EV + ++ Q+ Q S P G LRI G L L EF YP I Sbjct: 64 QYYQRCLEVLGLVADSEQLAEQAHSDIPKGTLRITAPPVFGTERLTPALSEFSRRYPQIN 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++L N+ +D+ D AIRL + +++SSLI R + + A+P YL P S Sbjct: 124 LYVVLSNERMDLVDSGFDVAIRLGE-LETSSLIARPMQDYTLTLCASPAYLARRGTPSSP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240 EL +H+ + F D L + GE P L +NS + Q V G G Sbjct: 183 AELQQHDCLAFAYPANDNWRDTEKLWRMTGDGGELEVPVSGSLTINSSQGLRQAAVNGMG 242 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 I +L D +V+ ++ LV ++ PS ++ Y + KL+AF +F K Sbjct: 243 IIMLADALVQPDLESGKLVALLTTYKLPSRPMHLLYGQDRYRLPKLRAFVDFAMEK 298 >gi|206561026|ref|YP_002231791.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198037068|emb|CAR52989.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 300 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 11/298 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + V V +G+F A E + L+Q ++SR ++ LE VGI++F R AR + Sbjct: 1 MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E I+ S + G+LR+ G +L + EFL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEDAAIDAGRSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +++ + ++ D+ D D A+R P + SS R L+ + A+ Y++ Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASAAYVERH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYC 235 EP ++L H + D P + W + + L VN ++ C Sbjct: 180 GEPRHPRDLAHGHRCVLIRD--PVTGRPYEWEFHRGKEVVPFDAGGRLMVNDTGGLLGAC 237 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G+GIA L + +D + LV ++ + +F +Y + + K++ F +F+ Sbjct: 238 VGGAGIAQLLELYARDIVADGKLVLLLPEWTDETFPLYAYHHASNLVAAKVRVFLDFV 295 >gi|52425450|ref|YP_088587.1| LysR protein [Mannheimia succiniciproducens MBEL55E] gi|52307502|gb|AAU38002.1| LysR protein [Mannheimia succiniciproducens MBEL55E] Length = 298 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 136/295 (46%), Gaps = 14/295 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + LR F VVAR+GSFT A Q+ +SQS++S I G+E + IKLF+R R ++ T Sbjct: 1 MKENLNDLRAFLVVARTGSFTKAGAQMGVSQSALSHSIRGIEERLNIKLFHRTTRSISTT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L++ S ++ ++ EL E +G LRI L F YP Sbjct: 61 EAGEQLYQRLSPLFDDIDNELNELSEFRNAVTGTLRINGNEHAFYYALGDKFVRFSQKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L+ +N+ IDI + D IRL + + R + M A+P YL N P Sbjct: 121 EVNLELVAENRFIDIVAERFDAGIRLGSDVAKDMIAVRLTDKLPMCCVASPEYLANYGTP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQY 234 + +L +H + M NW +D P + RI +Q +S + Y Sbjct: 181 KTPYDLTEHQCLLHRLSNGGVM---NW-EFID-PKSKGRILKVQPQGTISANGGRVLENY 235 Query: 235 CVLGSGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G GI P D + +D + L+RI++ + YP +N+ KA Sbjct: 236 ARSGLGILWCPLDMVEEDIRSGKLIRILQQWDMDYDGYHLYYPNRRQNSPLFKAL 290 >gi|332283398|ref|YP_004415309.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330427351|gb|AEC18685.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 339 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 4/246 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L L +S+++ I LE + ++L R R L+LT G+ Sbjct: 4 FQAMQVFTRVVDANSFTLAADSLGLPRSTVTTTIQSLERSLKLRLLNRTTRRLSLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ +E ++ + PSG+LRI T +G+ +L L +F YPDI++ Sbjct: 64 AYYERCVQILADIEDMDASFRDVTRGPSGRLRIDTPPSIGRLILVPALCDFHTRYPDIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DCAIR+ ++ SS++ R++ T AAP YL+ EP SI+ Sbjct: 124 AIGMGDRIVDMVRDAVDCAIRVGD-LEDSSMVARRIGTFESITCAAPSYLEQHGEPKSIE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ + + + +W VD ++ + VN + +Q V G G+ Sbjct: 183 DLANHHAVHY--FSARTGRVIDWSFMVDGKSQNVQVKGSVSVNDAEAYVQCGVSGFGLIQ 240 Query: 244 LPDYIV 249 Y+V Sbjct: 241 PSRYMV 246 >gi|91781426|ref|YP_556632.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91685380|gb|ABE28580.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 367 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ + + N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|207858172|ref|YP_002244823.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709975|emb|CAR34330.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 310 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 19/294 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 13 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 73 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 132 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239 E + +P + W T + + + + V+S S+M + + GS Sbjct: 187 LESLAQAEWIIHERLPTPLR---WSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGS 243 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ALLP ++V ++ L+ ++ D P +Y YP+A T K++AF +F+ Sbjct: 244 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVTTKVRAFIDFL 297 >gi|186473422|ref|YP_001860764.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195754|gb|ACC73718.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 305 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA + +S +++SR ++ LE +G +LF R +R L LTE G Sbjct: 6 DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEERLGARLFNRTSRQLALTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +++Y + E + +E SV+P G +R+A + G + L F YP++ Sbjct: 66 HTIAEKAADIYRQAEAAENAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +DI D A+R+ + SSL+ R+L + A+P +L+ P Sbjct: 126 IDLHLSDATVDIVAQGFDAALRIAA-LPDSSLVARRLCPVSQLVVASPEHLERYGRPAHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L +++ + F A + P+ + L+V + +++ + G IA Sbjct: 185 RDLVGRPCLSYAYRARSDVWRFVNDAGDEEPVTP--VGPLRVTNSDALLPALLDGLAIAE 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++I + + L I+ D +YF P A K+ A ++ Sbjct: 243 LPEFIAGEYLADGRLEAILTDWHLTRGGLYFVTPSARARPAKVTALADYF 292 >gi|83644495|ref|YP_432930.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632538|gb|ABC28505.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 297 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 3/192 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L+ F GSF+ A + L LS SS+SRQI LET++ KLF R R L L+++G Sbjct: 3 DELKTFIKCCECGSFSAAGKTLLLSPSSVSRQIDSLETKLQTKLFQRTTRQLILSDEGRF 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++ +L+ T L++ +P G+LRI+ G+ + L +FL LYP + + Sbjct: 63 LLERAEDILARLDDTVASLRQLHGEPEGRLRISVLETYGRLHISPLLPKFLALYPKVSVD 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ +D+ D D AIR+ P + S L +KL M A+P Y+ + P + ++ Sbjct: 123 IELENQMVDLYRDAVDIAIRIGPP-EDSRLKAKKLTDGRMLLCASPDYVASFGPPQAPED 181 Query: 186 LDKHN--LITFG 195 L +HN LI+ G Sbjct: 182 LARHNCLLISRG 193 >gi|77457661|ref|YP_347166.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381664|gb|ABA73177.1| LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 301 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 131/291 (45%), Gaps = 17/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V F AA + + +S +S+QI LE +G++L R R L LTE G++ Sbjct: 7 MRAFVVTVGENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLHLTEAGAEYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV L+ + ++ + G LR+ + G L + F +P+I++QL+ Sbjct: 67 EAAREVIAALDEAEQRARDGVGELRGVLRVNAPMSFGLRRLGKLIPLFHEQHPNIELQLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D D IR+ + S++I R+L A+P YL+ P + Q+L Sbjct: 127 LSDQQVDPVRGGFDVTIRIAS-LPDSTMIARQLAPAPRIMVASPAYLERAGTPQTPQDLR 185 Query: 188 KHNLITFGDL-----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H + +G L + C V P L N+ + Q G GIA Sbjct: 186 SHQCLNYGYLQSGVSLQLCNGKETQRVNVTGP--------LHANNGDLLAQAAEAGMGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLPD+IV++ LV ++ + P+ T+ Y A + K +AF F+ Sbjct: 238 LLPDFIVEEALAAGRLVPVLCEWQAPAITINAVYSSARRVPQKTRAFIAFL 288 >gi|86135897|ref|ZP_01054476.1| putative transcription regulator protein [Roseobacter sp. MED193] gi|85826771|gb|EAQ46967.1| putative transcription regulator protein [Roseobacter sp. MED193] Length = 302 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 7/284 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F VA SFT A Q+ +S S+ ++ LE +G +LF+R R +TLT+ G Sbjct: 5 DCMRTFVAVAAQHSFTAGARQIGISTKLASKYVARLEERLGAQLFHRTTRSVTLTDTGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V ++E + +QE + +G +R+ G L + F +P +QI+ Sbjct: 65 YLERCLPVLDQIEEMEGVIQERQSELAGAIRLTAPTGFGSRELVQAVTPFQQEHPKVQIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L + I + D AIR K +Q S+L+ RKL + + AAP YL+ EP + Sbjct: 125 MLLSDYHAPIVEEGIDLAIRFGK-LQDSTLVARKLCDMRLVVVAAPDYLERFGEPGHPKA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HN + L D + P + NS ++ V G GIA P Sbjct: 184 LATHNCLL---LQSSAQPDIWRFREEGQVTSVPVSGSFRANSPRAVAHMAVGGQGIARCP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 YIVK + L + D +Y YP + T +++A Sbjct: 241 YYIVKPLIEQGQLQFLFADREDAPLPLYVVYPPSRHLTARIRAL 284 >gi|293606896|ref|ZP_06689244.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814748|gb|EFF73881.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 289 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD R+F + R G+ AA L + Q++ R+++ LE+ + +LF R G T Sbjct: 1 MDWDNARIFLAIYRVGTLRGAAALLQIDQATAGRRLAALESSLDARLFLRTPGGYVPTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + Q ++Q + SG +R+A + + + ++ +PDI Sbjct: 61 GELAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVAASETVASYFVMEAVRRVQAQHPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + +++ AD AIR KP + LIQR L + YA+ YL EP Sbjct: 121 RVVLSASIQISNLTRREADLAIRNLKP-DNPDLIQRHLARKEVGLYASRGYLAAHGEPRP 179 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H L+T+ ++P + F P G RI+ +++NS + I+ G GI Sbjct: 180 GTAFAGHTLVTYQQAVLPGWSDTF-----CGEPTGNGRIA-IELNSGMMILAAVAAGLGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D P+LVRI P + ++ L T +++A + I Sbjct: 234 GELPTHMAPDYPDLVRIWPGRAEP-YDLWLVMHGDLNRTARVRAVADAI 281 >gi|254501906|ref|ZP_05114057.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222437977|gb|EEE44656.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 309 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 14/301 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +RVF V+R SF A++ L ++ +S++R I+ LE ++G +L R R + LT G Sbjct: 8 DLKPIRVFLEVSRLQSFAAASKTLGMTPASVTRVIARLEQDLGHQLLVRTTRKVALTSVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + V + Q +L+ G+L I + G +L L+ F L YP+I Sbjct: 68 ATVAARYQPVVESFDRIQRDLEREMQPHRGRLSINAPMSFGLRMLPSLLESFKLAYPNID 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++L + +D+ + D AIRL +P + S I RK+ + A AAP +L+ P + Sbjct: 128 LTVMLTDTLVDVVAEECDLAIRLSEPPRDKSTIWRKICEVPRCAIAAPVFLERAGRPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +++G E W + R I L N+ + G+G Sbjct: 188 DTLTPDMCLSYG----SGQEPEAWRFQKGGIKRTILTG--PGLHSNNGDFLYAMARSGAG 241 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 I +LP++IV D + + R++ D I PS + YP + F +F FL R Sbjct: 242 ITVLPEFIVADGLRSGEVERVLPDWILPSLWLSLYYPPYEALPPLVATFTDFFEAFLDDR 301 Query: 296 D 296 D Sbjct: 302 D 302 >gi|172064896|ref|YP_001815608.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997138|gb|ACB68055.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 301 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 18/302 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L L+ SS+ R + LE +G L R R +TL++ G+ Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ L + + +PSG LR++ + G + + + FL YP + + Sbjct: 64 VYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPQVGAFLARYPRLDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + +D+ D AIRL + S+ ++ R+L T + A+P YL P + Sbjct: 124 DLQLTDARVDLVTSRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPSTPG 183 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240 EL H + F GD D + V ++ +++ +++ L G G Sbjct: 184 ELVDHGCLRFHFGGDQQAWSFVDAHGATKV-------LVTGRLKSNHSEVLRAAALDGGG 236 Query: 241 IALLPDYIVKDN---PNLVRIME--DVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293 IALLPD++V + L R+ E DV+ + V Y + + ++ AF +F+ + Sbjct: 237 IALLPDWLVDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQ 296 Query: 294 AR 295 AR Sbjct: 297 AR 298 >gi|116695283|ref|YP_840859.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113529782|emb|CAJ96129.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 290 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 8/284 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF + R G+ AA L + Q+++ R+++ LE+ VG LF R + G LT Sbjct: 1 MNWDDARVFLALYRDGTLRAAARSLGVDQATVGRRLTALESVVGATLFLRTSSGYVLTMA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + Q Q + +G++RI TT L + L L+ + YP++ Sbjct: 61 GESVLDAAERMEQSANDFQRLTQGLDDRLAGEVRITTTDSLAMDFLMPALEALHVKYPEV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ + ++++ D AIR +P + LI R+L M +A+P YL+ EP + Sbjct: 121 VWQIDASTRMLNLAKRETDIAIRTARP-DNPDLIARRLAQWPMGLFASPGYLRVHGEPQA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+L+ + + E V PI RI VNS L + G G+ Sbjct: 180 GTAFSGHDLVVYQPYVLGSREPM----LVGEPISGGRIVA-AVNSSLMLRSAIKAGLGVG 234 Query: 243 LLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285 +P Y+ K + +LVR+ E + V+ + L++T +++A Sbjct: 235 EIPVYMGKAD-DLVRLWPERCRDVPYEVWLVTHKDLRHTARIRA 277 >gi|59713236|ref|YP_206011.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|59481484|gb|AAW87123.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 300 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++AR G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LTE G + Sbjct: 11 IRSFVLIARLGNFTKAAETLDVSRSHVSRQISSLEKQMGVTLLIRTTRTLRLTEAGKHFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + K G+++I LG+ L + F+ YPD+ I L Sbjct: 71 HQCEQALHTIDQALLSAVDDVEKVQGEIKINCVGGYLGEVFLADIVNTFMQQYPDVSISL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ ++ S + +KL+ I M A+P YL+ P +EL Sbjct: 131 DFSSNRVDLIEEEFDIAFRM-GSLEDSGFVAKKLLDIEMGTLASPKYLQQYGRPSHPKEL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H+ +T + +++ + V++ + I LQ + ++ + G+GI +P Sbjct: 190 QQHHCLT------GSVRKWHFQSLVNKEHYDVSIKGNLQCKNGRVLVAGAIAGNGIIRVP 243 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D+ LV++ E+ P+ Y +++ F +F+ Sbjct: 244 LIYCQQELDDKKLVQVFEEWGIPTVDFSAIYHRDRYQPKRIRTFIDFV 291 >gi|37676126|ref|NP_936522.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200667|dbj|BAC96492.1| transcriptional regulator [Vibrio vulnificus YJ016] Length = 307 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 146/293 (49%), Gaps = 7/293 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + L +F V GSF+ AA+QLHL++S++S++I+ LE ++G +L R R L+LT Sbjct: 1 MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + ++ + + E +P G+L+I + G + + EFL YP Sbjct: 61 EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ L L+++ +D+ D IR+ + S+LI ++L A+P Y+ P Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +HN + + + ++ +L + P+ + + VN+ +I + + G G Sbjct: 180 SKPADLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPKGNFI-VNNSEAIRRALLAGIG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA +P +I+ + LV +M + P +Y +PE K++ F +F+ Sbjct: 237 IAQMPTFIIGKELRDRKLVNLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFL 289 >gi|307250442|ref|ZP_07532389.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857571|gb|EFM89680.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 33/307 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T + EL+ G LRIA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTQRGELR-------GSLRIASNAAFGSTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R +++ R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236 S QEL H + ++ K W D G+ + S L +N +++ + + Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290 GIA+LP Y ++ N L ++ D P++ VY YP + +++F +F+ Sbjct: 231 ADGGIAMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEE 290 Query: 291 FLKARDW 297 F DW Sbjct: 291 FEGKGDW 297 >gi|296161358|ref|ZP_06844165.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295888344|gb|EFG68155.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 367 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ + + N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|237653957|ref|YP_002890271.1| LysR family transcriptional regulator [Thauera sp. MZ1T] gi|237625204|gb|ACR01894.1| transcriptional regulator, LysR family [Thauera sp. MZ1T] Length = 307 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 138/293 (47%), Gaps = 9/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L VF V GS T AA++L L +S++SR++S LE ++G +L R R L +TE Sbjct: 9 IDPNDLLVFARVVAEGSLTAAADKLGLPKSTVSRRLSRLEEQLGERLLLRTTRRLNITEF 68 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L ++ ++E + +PSG+LR++ D LL L F L+P + Sbjct: 69 GAALLDHARQLESEVEAVAALAESRQARPSGRLRVSMPSDFANLLLTDMLAAFAALHPAV 128 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L L + +D+ + D AIRL + L R+L YAAP YL EP + Sbjct: 129 TLELDLSPRRVDLLGENFDLAIRLGDLPDDALLAARRLAVFPWGLYAAPAYLAEHGEPQA 188 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H + L+ + + W L R G P S + NS ++++ +G Sbjct: 189 PDDLHRHRALR---LLARTGDAIRWTLLCGDQRWEGVPPGS-ITANSPELLIRFACAAAG 244 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +P+Y + L R++ D PS + +P K +AF + + Sbjct: 245 ITTVPEYFAAPHVQRGELRRVLPDWRPPSIAAWAVFPGRRLMPAKTRAFLDML 297 >gi|149909259|ref|ZP_01897916.1| transcriptional regulator, LysR family [Moritella sp. PE36] gi|149807783|gb|EDM67729.1| transcriptional regulator, LysR family [Moritella sp. PE36] Length = 311 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 17/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA L+L +S+ISR++ GLE E+G+KLF+R R +TLT GS Sbjct: 4 EDIALFHRIVEAGSLVDAAGLLYLPKSTISRRLQGLEDELGVKLFHRQNRAMTLTTAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T + LE T E+ + + SG LRI L+ + +F+ L P + ++ Sbjct: 64 FYNKTLSLLASLELTITEITDKDAEVSGHLRILIFPLPNLMLIAHGIYQFMDLNPKLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS--SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 LI+ + +D+ D A + + + ++ R +++ +H A+P YL P I Sbjct: 124 LIVTAEPLDMIRHNIDIAFMVEEAFNNIDIDMVARPVISEILHFVASPEYLYKAGTPRVI 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGS 239 E+ +HN I + P + FN L P+G P + +NS ++ + Sbjct: 184 SEMSQHNSIMYR--FPNG-QVFNEL-----PLGNNEFLPVSGNICLNSIQLALESALASR 235 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P+ + D LVR+ DV Y YP Sbjct: 236 GIAYIPERLCADEVKQGTLVRLFTDVEPYEGKCYLVYP 273 >gi|116252903|ref|YP_768741.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257551|emb|CAK08648.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 300 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 15/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ GSF+ AA L + S++SR+++ LE ++G+ L R R L+LT QG Sbjct: 3 DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE L + L E+ KP G L+I+ + GQ + + FL YP+IQ Sbjct: 63 RAYYDRCSEPLTHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISSFLKTYPNIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + N +D+ + D IR + ++ SS++ ++L + AAP YLK P Sbjct: 123 IDLFVTNLFLDLIAENVDLGIRFGE-LKDSSIVAQRLGKSVRYLVAAPDYLKGRVLPTKP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 ++L H + L+ + W R +S + + ++ + G GI Sbjct: 182 EDLKDHQCV----LLNGRNGEAEWHLVSGRKSVRLHVSGPVSSRDFDAVSAFTYRGHGIG 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298 LLP LV ++ D + V+ YP T + R +F++A + WK Sbjct: 238 LLPSTYCDQQIRRGELVHLLPDWSSEEIFVHAVYP-----TRRFLPARLQVFVEALKAWK 292 >gi|85712917|ref|ZP_01043958.1| Transcriptional regulator, LysR family protein [Idiomarina baltica OS145] gi|85693297|gb|EAQ31254.1| Transcriptional regulator, LysR family protein [Idiomarina baltica OS145] Length = 304 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/300 (29%), Positives = 142/300 (47%), Gaps = 29/300 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +F V +GS + AA L L ++++SR++ LETE G++LF R G+ LT+ G Sbjct: 5 DITNYYLFAKVVEAGSISSAARALSLPKATVSRRLQQLETEQGMRLFNRSQSGIRLTDVG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ E+ Q Q KP G++ + L Q+LL L EF+ LYP+I Sbjct: 65 EAFLLHCQQLVEAAESAQQVTQRLLEKPRGRVNFSAPYALSQSLLVDVLPEFMTLYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPL 181 I L++ N+ I++ + D A+R+R I+ SSLI R L + +AAP L+ EP Sbjct: 125 INLVVTNRPINLIDEGIDVALRVRPNIEDSSLIARPLSESPLTLFAAPALLEQHPINEPS 184 Query: 182 SIQELDKHNL-ITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 + L+ +L T G + +L T ++ G EPR L + + + + Sbjct: 185 DLLALNHLSLHYTSG--------QYRYLLTHEK--GEQQTIKFEPR---LITDDMIVLRE 231 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+ LP Y+ + N LV+++ + P ++ YP G L A R I Sbjct: 232 SAIKAQGVTALPTYLCNEAVQNQQLVQVLPEWTLPVGIMHLTYPH---RRGLLPAVRVLI 288 >gi|303253240|ref|ZP_07339389.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248211|ref|ZP_07530239.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307261669|ref|ZP_07543336.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302647922|gb|EFL78129.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855388|gb|EFM87563.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306868661|gb|EFN00471.1| LysR family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 33/307 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T Q EL+ G L+IA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTKQGELR-------GSLKIASNAAFGGTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R +++ R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPTYLAQHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236 S QEL H + ++ K W D G+ + S L +N +++ + + Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290 GIA+LP Y ++ N L ++ D P++ VY YP + +++F +F+ Sbjct: 231 ADGGIAMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEE 290 Query: 291 FLKARDW 297 F DW Sbjct: 291 FEGKGDW 297 >gi|294146718|ref|YP_003559384.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677135|dbj|BAI98652.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 311 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 24/281 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD + F VA +GSFT A L +S + +SR I LE V LF+R R + LT+ G Sbjct: 3 NWDGIDEFISVATAGSFTRGARALGVSTTHVSRSIMALEQRVQALLFHRTTRTVRLTDTG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ E K I L +P G+LR+ + +G+ + ++ F + +P + Sbjct: 63 -RVFFERCERIAKDRDEAIALIGERSEPQGELRVTCSTAMGERFVAPIIRRFAMQHPKLA 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + L N+ ID+ + D A+R + LI ++ + ++ AAP YL + P S+ Sbjct: 122 VSIELSNRVIDLVGEGFDVAVRT-GTVNDPRLIATRVASRTLYTCAAPSYLASAGRPASV 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVL 237 + L H I W VD RP G R C NS ++M+ C+ Sbjct: 181 EALAGHECIA--------GSASTWHFKVDGQEVIHRPKG--RFRC---NSGHAVMEACIS 227 Query: 238 GSGIALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPE 275 G GI LPD+ + +V ++EDV ++ YP+ Sbjct: 228 GLGICQLPDFYILPYLKHGMVELLLEDVQPDDEPIWAVYPQ 268 >gi|206576336|ref|YP_002238278.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|288935265|ref|YP_003439324.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|290509318|ref|ZP_06548689.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|206565394|gb|ACI07170.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|288889974|gb|ADC58292.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] gi|289778712|gb|EFD86709.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 295 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 7/267 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VVAR SFT AA QL +SQS++S + LE + ++L R R + TE G +L + Sbjct: 12 FMVVARERSFTRAAAQLGVSQSALSHAMRHLEARLDVRLLTRTTRSVVPTEAGERLIQRL 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 ++E L+++ +P+G LRI +L LK F+L YPDI I++ +DN Sbjct: 72 GPHLEEMERALTALRDTRERPAGNLRITAGEHATSTVLWPALKPFMLQYPDINIEITVDN 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI D +RL + + + R + M +P YL+ P + +L +H Sbjct: 132 GLTDIVDGRFDAGVRLGEQVAKEMIAVRIAPDMRMAVVGSPAYLQQAGTPQTPWDLAQHR 191 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249 I +P + W D + R+ + +NS + G G+A +PD V Sbjct: 192 CINL--RLPTRGGLYAWEFARDGRDIQVRVEGQVILNSLPQRIDAAEAGLGLAYVPDDCV 249 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273 + + LV+++ D TP+F Y Y Sbjct: 250 AEALASGRLVQVLAD-WTPTFPGYHLY 275 >gi|167993151|ref|ZP_02574246.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242652|ref|ZP_02667584.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450263|ref|YP_002046870.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408567|gb|ACF68786.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205328753|gb|EDZ15517.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337955|gb|EDZ24719.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|312913930|dbj|BAJ37904.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225588|gb|EFX50642.1| putative LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 303 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 19/294 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239 E + +P + W T + + + + V+S S+M + + GS Sbjct: 180 LESLAQAEWIIHERLPTPLR---WTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGS 236 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 237 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|209516663|ref|ZP_03265516.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209502938|gb|EEA02941.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 296 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 10/259 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AA+ + S++SR+IS LE +G++L +R R + LTE G Sbjct: 11 NDMALFVEVVKAKGFRSAADATGVPNSTLSRRISELERSIGLRLLHRTTRKIELTEAGQI 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L + +PSG LR + +D L + EF LYP I Sbjct: 71 YFERCKRIVDEARLAHEQLGDMLAQPSGVLRASLPVDFAVTYLAPLIAEFAALYPGIGFD 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ + ++S LI R + T+ H YA+P YL+ EP + Sbjct: 131 FDLTPRRVDLVSEPFDVAIRIGES-ENSQLIARTIATLTPHLYASPDYLERSGEPGKPAD 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L++H+ FG L N T +G +NS + LG GI L+P Sbjct: 190 LEQHD--CFGILKAGAWTLLNGTRTETVSVG----GRFTLNSVGMARRLATLGMGIVLVP 243 Query: 246 DYIVKD---NPNLVRIMED 261 + IV D + L RIM + Sbjct: 244 EEIVADELVSGRLRRIMPE 262 >gi|170700000|ref|ZP_02891026.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170135100|gb|EDT03402.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 314 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 14/294 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V +G F AAE +S + + I LE +G +L R R +LTE G Sbjct: 4 FTSMSVFVRVVETGGFAAAAEVTGISAAMVGNHIRALEAHLGARLLNRTTRQQSLTEVGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + +E + G LR+ + G L L FL P++++ Sbjct: 64 TYYGQCVSILSQMELAESDAREMTAVARGVLRVTAPVSFGAQCLTPALSRFLEQAPNVEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L ++ +++ + D AIR+ + +S+LI R+L+ M AAP YL+ P Sbjct: 124 ELTLSDRLVELVNEGFDVAIRIGH-LPASNLIARQLIPYRMVVCAAPAYLERHGTPHDPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H ++FG + + ++ + GE R L VN ++ + G+G Sbjct: 183 DLIHHECLSFG--VHRRTREWRFYEAN----GESRAVQVGGRLTVNHGPALRMAALTGAG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I + P+ +V D N +LVR+ E+ P ++ Y + K++ F NF+ Sbjct: 237 ILMQPELLVADDLRNGSLVRLFENERMPERPMHLVYQRDINMPLKVRHFVNFVL 290 >gi|21309657|gb|AAL47571.1| transcriptional regulator LysR [Shewanella algae] Length = 303 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 142/294 (48%), Gaps = 17/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V R+ F+ AA + L +S+ISR+I+ LE ++G++L R+ R ++LT+ G Sbjct: 3 DLNGMLLFAAVVRAEGFSQAARETGLPKSTISRKIAQLEQQLGVRLLQRNTRSISLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + +++E + ++ + SG LRIA + Q L+ F+ LYP ++ Sbjct: 63 ALFYQHCDSICNEVEAAKATIENTHNDVSGSLRIAIPVSFSQELIANLCSGFMRLYPGVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D+ + + D AI+ P+Q S L+ R L A P YLK+ P + Sbjct: 123 LDVQFTDADVGLVGEGYDIAIKY-GPLQPSDLVARLLFERQPILVAGPGYLKSKGTPATP 181 Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++L +H+ I G + P +A+ R +VNS + + Q + Sbjct: 182 RDLARHDGILLGTSRSAPIWPLGKGSRKTMASFRRRT--------RVNSAIMVKQLALDD 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 GIA+L + K+ + LV ++++ F VY Y + + F +F Sbjct: 234 FGIAMLSHSVCKNELASGALVPLLQEWPIEPFKVYGVYSSRRQLATNISVFLDF 287 >gi|288937015|ref|YP_003441074.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288891724|gb|ADC60042.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 301 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 7/250 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++ +F V SGSF+ AAEQL + S++SR + LE+++G+ L R R L+LT Sbjct: 1 MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + +L E+ P G LR+ + + L +K F YP Sbjct: 61 EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H+ + F + P + W ++ D + E S + NS ++ Q C+ G+ Sbjct: 180 QHPSDLKQHHCLGFTE--PVSLN--TWPVSCCDGQLLEIE-SAVSSNSGETLKQLCLTGN 234 Query: 240 GIALLPDYIV 249 GIA L DY+V Sbjct: 235 GIACLSDYMV 244 >gi|254462575|ref|ZP_05075991.1| transcriptional regulator, LysR family [Rhodobacterales bacterium HTCC2083] gi|206679164|gb|EDZ43651.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium HTCC2083] Length = 293 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AA+ L + +++ R + LE +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAADILGVHHATVIRHVDALEARLGVKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + ++ + SG+L + T+++ L+ L F YPDI Sbjct: 63 EDLCRVAQATDEQFSQLAGRVKGKGEEVSGEL-VVTSLNGLAPLMSPTLSAFQERYPDIT 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + + + A AIR P Q +++Q K V+ + YAA Y+ P S Sbjct: 122 VRYLTGERLFRLEYGEAHVAIRAGAAPDQPDNVVQ-KFVSQSVGLYAAQSYVDRHGIPAS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSG 240 + +H + DL F WL A V PR + L ++ M+ + G+G Sbjct: 181 EADYAQHRFVGH-DLETNRAPFFVWLNAHV------PRENVLFRSTDNRAMELAISAGAG 233 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 I + + +P++V+I +++ L T K++AF F+ +A+DW Sbjct: 234 IGFMTVKDAESHPDMVQIAPPRPEWYASLWLVSHVDLHRTAKVQAFLKFVKEQAKDWN 291 >gi|299530479|ref|ZP_07043899.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298721455|gb|EFI62392.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 300 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 144/297 (48%), Gaps = 18/297 (6%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR+ F VA + +F+ AA+ LHL+ ++S QIS LE+ +G++LF+R R + LTE Sbjct: 2 DRLRLITTFMNVAEAENFSRAAQSLHLTPQAVSLQISQLESWLGVRLFHRSTRRMALTED 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + EL++ + +G +++A+++ LGQ L+ L +F YPDI Sbjct: 62 GRVFYERCRVGLQSIDQGERELRDRASGITGSIKVASSLSLGQLLVAPLLAQFNESYPDI 121 Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I+L+ N +D+ MD P+ + SL+ R++ AAP YL Sbjct: 122 RIELVTQNPWPDTVDLGMDIGVIG----GPLLNVSLVARRVGRFTHMLCAAPAYLAAKGT 177 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVL 237 P S QEL +H I G P+ + W R + EP S + + + Q + Sbjct: 178 PKSPQELLQHCCI--GLRHPRTNRIWPWTFQSARRQTMLEPPFSFITQDPAVQ-RQLVLQ 234 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+GI L DY + + LV + P V+ P+ ++K +F++ Sbjct: 235 GAGIGQLTDYFARPLIASGALVELPLGYSGPRLDVHVFIPQREHTPRRIKLLNDFLY 291 >gi|168235950|ref|ZP_02661008.1| transcriptional regulator, LysR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737137|ref|YP_002115861.1| transcriptional regulator, LysR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204928105|ref|ZP_03219305.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712639|gb|ACF91860.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290665|gb|EDY30019.1| transcriptional regulator, LysR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322427|gb|EDZ07624.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 303 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|53729074|ref|ZP_00134172.2| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208654|ref|YP_001053879.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae L20] gi|126097446|gb|ABN74274.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|218511608|gb|ACK77797.1| LysR [Actinobacillus pleuropneumoniae] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 33/307 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF +VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T + EL+ G L+IA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTKRGELR-------GSLKIASNAAFGGTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R +++ R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLAQHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236 S QEL H + ++ K W D G+ + S L +N +++ + + Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290 GIA+LP Y ++ N L ++ D P++ VY YP K +++F +F+ Sbjct: 231 ADGGIAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRKLPQTVRSFVDFLVEE 290 Query: 291 FLKARDW 297 F DW Sbjct: 291 FEGKGDW 297 >gi|300698042|ref|YP_003748703.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074766|emb|CBJ54329.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 8/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L F+ VAR SFT AA QL +S S++S I LET +GI+L R R ++ TE G Sbjct: 5 NYHDLLAFFAVARERSFTRAAAQLGVSPSALSHTIRALETRLGIRLLTRTTRSVSPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + +++ + E PSG +RI T + +L L + L YPD++ Sbjct: 65 ERLMQSVAPRFEEIDAELAAVGELRDTPSGTIRITATDYAIRTVLWPRLSKVLRDYPDLK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ + D DI + D +RL + + R + M AP YLK P + Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDSLAKDMIAVRVAPDLRMGIVGAPAYLKKHPAPKTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L H I +P + W + + R+ L N I+ + G G+A Sbjct: 185 QDLTTHRCINL--RLPTRGAVYAWELKKGKRELQVRVDGQLTFNGIYEILDAALSGYGLA 242 Query: 243 LLPDYIVKDNPNLVR---IMEDVIT--PSFTVYF 271 +P+ +V+ + R ++ED P F VY+ Sbjct: 243 YVPEDLVQPHVAAGRLKWVLEDWFPTFPGFHVYY 276 >gi|295675121|ref|YP_003603645.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295434964|gb|ADG14134.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 367 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L+ + YP + + Sbjct: 67 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D + + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPTRPEHLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H ++ E + P GE R+ + + N+ + Q+ +LG GIA+L Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P Y++ + LVR++ D P + YP K++ F Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|167568286|ref|ZP_02361160.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 351 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P+ + L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPMHPEHL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNIVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ + P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSEYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|313201979|ref|YP_004040637.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gi|312441295|gb|ADQ85401.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 310 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 20/311 (6%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR R+ GS A Q+ ++ ++ S+ I LET +GI+L R R + LT+ Sbjct: 2 DTLRSIETFVRAVEHGSIAAGARQIGITAAAASQNIQRLETTLGIRLLSRSTRSMALTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ LE + + E +P G+LRIA + G+N++ + F+ YP I Sbjct: 62 GQLYYNAVKDILRDLELAKSSITEFQGEPQGRLRIACSAAFGRNVIADMIPPFMRRYPRI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++LI + ID + D +IR ++ ++ +I R + + + A+P YL P Sbjct: 122 SVELITTDNPIDHITENIDISIRFKQQLE-PGMIARHIARVPILFCASPDYLARAGRPTQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241 +EL H +TF +P W D EP I+ + N ++ + V G+GI Sbjct: 181 PEELSHHACLTF--RVPASGRMLGWGFLRDGLRFEPDITPTVNSNDIDALARLAVGGAGI 238 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTV---------YFCYPEALKNTGKLKAFRNF 289 A L ++ + D+ L + T V Y Y + T KL+ F ++ Sbjct: 239 ARLGAFVAQPLIDSGQLEALFTGNATTEGAVTADIEPLDFYVSYQDKHAMTHKLRVFVDY 298 Query: 290 IF-LKARDWKF 299 + L +W+ Sbjct: 299 LVELMPEEWRM 309 >gi|289627450|ref|ZP_06460404.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648036|ref|ZP_06479379.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. aesculi str. 2250] gi|330866682|gb|EGH01391.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S + + I LE +G++LF+R R + +T +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LET ++EL + P G+LRI ++ L L+ + EF+ YPDI++ + Sbjct: 69 CRRILSELETAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIIEFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ R++ + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSRRMGGFQLKIVGAPDYFARRGTPQHPADLSRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P + +W + R G + QV N+ ++ G GIA LPD Sbjct: 186 ACLLHK--FPSSGKFEHW--PLRREAGADDLDLPQVMVCNTTEVLVDVARAGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ + LV I+ D + + +P + + +L+ F +F+ Sbjct: 242 FMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFM 288 >gi|218529142|ref|YP_002419958.1| LysR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|254559964|ref|YP_003067059.1| LysR family transcriptional regulator [Methylobacterium extorquens DM4] gi|218521445|gb|ACK82030.1| transcriptional regulator, LysR family [Methylobacterium chloromethanicum CM4] gi|254267242|emb|CAX23074.1| Putative transcriptional regulator, LysR family [Methylobacterium extorquens DM4] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 127/272 (46%), Gaps = 14/272 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA+ GSFT AA++L ++QS++S ++ LE +G++L R R ++ TE G +L R Sbjct: 12 FATVAKEGSFTRAAKRLGVTQSALSHAMNNLEARLGLQLLNRSTRSVSTTEAGERLLRAV 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E L KP+G +RI + +L L+ L YPDI ++++ + Sbjct: 72 GPQFEQIEVELTALTGMRDKPAGNIRITAPEHAVETVLWPALQRMLPDYPDITVEVVTSD 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI + D +R+ + ++ + + M AP YLK P ++L H Sbjct: 132 ARTDIVAERFDAGVRVGEYVEKDMVAVCIAPPMRMAVVGAPAYLKGRSRPRGPEDLTGHR 191 Query: 191 LITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 I GDL P E V R G+ ++ L+V I + G G+A LP Sbjct: 192 CINLGRVSRGDLFPWEFEKAGKEVNV-RVEGQLALTSLRV-----IRNAALAGLGLAYLP 245 Query: 246 -DYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274 + ++ D LVR+++D P + YP Sbjct: 246 EEKVLADVAEGRLVRVLKDWCEPFPGYHLYYP 277 >gi|307129111|ref|YP_003881127.1| LysR family transcriptional regulator [Dickeya dadantii 3937] gi|306526640|gb|ADM96570.1| Transcriptional regulator, LysR family [Dickeya dadantii 3937] Length = 298 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 131/266 (49%), Gaps = 12/266 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++++ F VV GS T AA QL + S ISR + LE+++G+ L +R R L L+ Sbjct: 1 MKVTLEEMQAFVVVVDCGSVTAAAGQLGQTTSGISRALGRLESKLGMTLLHRTTRRLALS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + +V +E + ++ KPSG+LRI Q+++ + EF YP Sbjct: 61 EEGQIFLQHARDVLQTVELAEEQIALRRRKPSGRLRINAAASFMQHVIVPLIPEFRRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D+ ID+ + D AIR+ + ++ SS+ R L + A+P YL P Sbjct: 121 CISLELNTDDVIIDLLEQHTDVAIRIGE-LRDSSIHARPLGATRLRILASPEYLSRHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLG 238 L ++ L H L+ F E N L + G+ P + + ++ + Q + G Sbjct: 180 LGVEALAGHTLLGFTQ-----SESLN-LWPLRSAFGDYYPIVPTIAASNGEMLRQLALRG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMED 261 GI L D++ +D+ LV+I+ D Sbjct: 234 EGIVRLSDFMTRDDVAAGRLVQILAD 259 >gi|238024973|ref|YP_002909205.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237879638|gb|ACR31970.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 304 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 138/302 (45%), Gaps = 16/302 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+ F + SGS T AAEQL + S +SR ++ LE ++G+ L R R LT Sbjct: 1 MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G L E+ +E + + V+P+G+LR+ + + L F YP Sbjct: 61 DEGELLLARAREILQAVEEAETAVSLGRVEPAGRLRVDAATPFMLHAIVPRLPAFTARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI ++L + + ID+ D AIR+ + S+L R L + +H A+P YL P Sbjct: 121 DIALELSNNERFIDLIEQRIDIAIRI-GALPDSTLHARPLGSSPLHVLASPAYLAAHGTP 179 Query: 181 LSIQELDKHNLITFGDL-----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 S+ +L +H L+ F D+ P + D G +S ++ Sbjct: 180 RSVADLARHRLLGFSDIETLNRWPLHLRADGSGNGSDDGTGLAITPAHTASSGETLRHLG 239 Query: 236 VLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + G GI L ++ D+ P L +M D P VY+ + AL TG+++ F + Sbjct: 240 LAGIGIVCLSGFMTADDIAAGRLVPLLTELMTDYRQPVNAVYYRH-AAL--TGRVQGFLD 296 Query: 289 FI 290 F+ Sbjct: 297 FL 298 >gi|160897007|ref|YP_001562589.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362591|gb|ABX34204.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 307 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA L +SQ +IS+ I+ LET + LF+R +R ++LT G Sbjct: 6 DLEAWAIFAKVAETGSFAKAAADLGVSQPTISKAITRLETRLKTSLFHRTSRRMSLTASG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + E+ E S G +RIA + G + L + F+ +P++ Sbjct: 66 QASLERAARILAEGEAVEAEISEQSKSLRGPIRIAAPMSFGISHLAPAVPAFMAEHPEVT 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L ++ ID+ D A+R+ + SSL+ R+L T+ + +P Y + P Sbjct: 126 LDLHFSDELIDVVAQGFDIALRISS-LPDSSLLARRLCTVRLLLVGSPEYFERHGRPSHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +EL +H + + + + E + ++ + + ++VN+ + G G+AL Sbjct: 185 RELAQHRALRY--VHSRLGEAWRFVHARRGEFAQVVPTAMRVNNAEGLAPALRAGLGLAL 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++ ++ L M+D PS ++ P +++A +F+ Sbjct: 243 QPEFLAWEDLQSGALQTCMDDWQVPSIALHIVTPPGRARPARVQALIDFL 292 >gi|70732518|ref|YP_262281.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346817|gb|AAY94423.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 294 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 13/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + LR+ VA + SFT AA L L+QS +SR IS LE ++G++L R+ R ++LT Sbjct: 1 MDLNALRLLVRVAETRSFTRAAGDLGLTQSGLSRAISRLEQQLGVRLLQRNTRSVSLTPD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + +L + L + PSG L+I+T G+ ++ + E +P + Sbjct: 61 GQVLVERAAPLLAELAHAEHLLLDRRESPSGMLKISTPSLFGRKVVMPVIGELTAQHPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ ++ ++ +DI + D +R IQ LI R L + AAP YL+ P Sbjct: 121 SIEAVMTDRVVDIIDEGFDAVVRT-GVIQDQRLIARPLAPLRWVTVAAPGYLERHGTPRH 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGS 239 + +L +HN + +L + D+ ++ G+P +Q I + VLG Sbjct: 180 LADLQQHNCLAVRNLRSGRLVDWQFMDQ-----GKPLDLAVQGRLIFDIGDALVDAVLGG 234 Query: 240 -GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIA L ++ V+ D LV ++++ S + YP + + + KL AF Sbjct: 235 FGIAQLMEFAVREALDTGRLVPVLQEHAGRSRELSLVYPPSRQCSPKLTAF 285 >gi|325923142|ref|ZP_08184832.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] gi|325546378|gb|EGD17542.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 94/187 (50%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L + R GSFT AA +L +SQS++S I GLE +G++L R R + TE G +L Sbjct: 9 LLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEASLGLRLLTRTTRSVAPTEAGERLI 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++E L E P+G +RI T + +L L + L YPDI+++++ Sbjct: 69 QTVAPRFAEIEEALSALSEMRDTPAGTVRITATDYAARAILWPKLSKLLRQYPDIKVEIV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +DN DI D D +RL ++ + R + M AAP YL P + Q+L Sbjct: 129 VDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLARRPIPKTPQDLT 188 Query: 188 KHNLITF 194 H+ I Sbjct: 189 AHSCINL 195 >gi|325914407|ref|ZP_08176754.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria ATCC 35937] gi|325539415|gb|EGD11064.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria ATCC 35937] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 11/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L + R GSFT AA +L +SQS++S I GLE +G++L R R + TE G +L Sbjct: 9 LLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEASLGLRLLTRTTRSVAPTEAGERLI 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++E L E P+G +RI T + +L L + L YPDI ++++ Sbjct: 69 QTVAPRFAEIEEALSALSEMRDTPAGTVRITATDYAAREILWPKLSKLLQQYPDIHVEMV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +DN DI D D +RL ++ + R + M AAP YL P + Q+L Sbjct: 129 VDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLARRPLPKTPQDLT 188 Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H I T G + +E + + R G+ L N M V G GIA Sbjct: 189 AHRCINLRMKTAGGIYAWELEK-DGREVIVRVQGQ-----LTFNGAYEAMDAAVDGFGIA 242 Query: 243 LLPDYIVK 250 + + +V+ Sbjct: 243 FVQEDLVR 250 >gi|187924115|ref|YP_001895757.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715309|gb|ACD16533.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 298 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 10/284 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F A SGSF AA +S + +S LE VG +L R R +LTE G + Sbjct: 7 MAIFVKTADSGSFAAAALAFGISSQMAGKHVSTLEERVGARLLNRTTRRQSLTEIGQIFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + QE S P G+LRI + G L + +L +P+++++L Sbjct: 67 ERCKALLADAAAAESVAQELSASPRGRLRITAPVTFGACCLAPLIARYLKAHPEVRVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + + AIRL + SSLI R L+ + A A+P YL EP + +EL Sbjct: 127 LTDRFVDLIDEGYEAAIRL-GALSDSSLIARPLMPYRLVACASPGYLAERGEPRTPRELT 185 Query: 188 KHNLITFG-DLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H ++F +P D W A P + N +++ + G G+ L P Sbjct: 186 AHECLSFAYTSMPA---DTAWRFADAQGEQAVPIAGRFEANDVKALLAAALNGGGVMLAP 242 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + VKD LVR++ + ++ +P A + T KL+AF Sbjct: 243 EVAVKDELAAGRLVRLLTGYEATARPMHLVFP-ASRVTPKLRAF 285 >gi|94499299|ref|ZP_01305837.1| transcriptional regulators, LysR family protein [Oceanobacter sp. RED65] gi|94428931|gb|EAT13903.1| transcriptional regulators, LysR family protein [Oceanobacter sp. RED65] Length = 293 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 147/297 (49%), Gaps = 26/297 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ ++ F VA + F+ AA+QL S S ISRQ++ LE +G++L R R ++LT+ G Sbjct: 3 NFEGIQEFVAVAEAQGFSAAAKQLDASTSHISRQVARLEERLGVQLLARTTRMVSLTDAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E+ L+ + + S+K +G L+++ + + L +F +P++ Sbjct: 63 ERYYTQCRELIDGLQQADESVSDESIKLTGTLKVSAAGTFAEQFIAPCLMQFAKSHPELS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I++ +++ ++ + D AIR + ++ S L+ R+L+ H+ A A+P YLK EP Sbjct: 123 IEMDFNSRMVNFVEEGFDFAIRYGR-LKDSGLVARRLIQRHLMAAASPEYLKQFGEPTHP 181 Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +L H L+T D +WL + ++ + ++S + N+ ++Q C G GI Sbjct: 182 DDLKHHKCLLTNND---------HWLFSENQQSFDVKVSGPWRSNNANVVLQACEHGMGI 232 Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 A +P + + N R I+ D + T + Y R F+ ++AR Sbjct: 233 AYMPVSSFEQSINSGRLKPILRDYWSHGITSWIVYQN-----------RRFLPMRAR 278 >gi|6580781|gb|AAF18287.1| transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] Length = 302 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 6/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VA+ SFT AA +L +SQS++S + LE + + L R R +T T G Sbjct: 7 NDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAGEY 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + ++E + E +P+G +RI +T D +++ +K FL YP ++I+ Sbjct: 67 LIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVKIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ D K +DI + D AIRL + + I +P Y +N P + Q+ Sbjct: 127 LVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H IT +P + W R I L NS I C+ G G+A + Sbjct: 187 LLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLAHM 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 PD + K + L+ ++ED + C+P +N L F Sbjct: 245 PDIMAKLYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPLSLF 289 >gi|325498364|gb|EGC96223.1| transcriptional regulator, lysR family [Escherichia fergusonii ECD227] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S I LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L N + + G GIA Sbjct: 185 HELQNHQCINM--RLPTAGGIYHWEFECEGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|324114572|gb|EGC08540.1| LysR substrate binding domain-containing protein [Escherichia fergusonii B253] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S I LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L N + + G GIA Sbjct: 185 HELQNHQCINM--RLPTAGGIYHWEFEREGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|187920768|ref|YP_001889800.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719206|gb|ACD20429.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 318 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 146/294 (49%), Gaps = 11/294 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LRVF VAR SF+ AAE L +S + +S++I+ LET +G +L +R R + +TE Sbjct: 6 SPDLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +++ ++ ++ ++ + P GKLRI+++ G+ + L F YP Sbjct: 66 AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L ++ +D+ + D +R+ I + LI R+L + H A+P Y+ P Sbjct: 126 LSVRLDLFDRLVDVGGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPDYIARHGAPR 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + EL H + I + F W TV +++ L N +++ + G Sbjct: 185 QLAELSSHACLA----IKERDHPFGLWRLTVRGETVSIKVTGPLSTNHGEVAVEWALAGR 240 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + V+ ++ +L +++ +V P+ ++ YP L + K++ +F+ Sbjct: 241 GIVLRSMWDVRPLLESGHLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFL 293 >gi|320158268|ref|YP_004190646.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O] gi|319933580|gb|ADV88443.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O] Length = 307 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 146/293 (49%), Gaps = 7/293 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + L +F V GSF+ AA+QLHL++S++S++I+ LE ++G +L R R L+LT Sbjct: 1 MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + ++ + + E +P G+L+I + G + + EFL YP Sbjct: 61 EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ L L+++ +D+ D IR+ + S+LI ++L A+P Y+ P Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +HN + + + ++ +L + P+ + + VN+ +I + + G G Sbjct: 180 SKPDDLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPKGNFI-VNNSEAIRRALLAGIG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA +P +I+ + LV +M + P +Y +PE K++ F +F+ Sbjct: 237 IAQMPTFIIGKELRDRKLVTLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFL 289 >gi|197335587|ref|YP_002155860.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197317077|gb|ACH66524.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 300 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F V +GS T AAE+L+L++S+IS+++S LE ++G+KL R R +LTE G Sbjct: 5 ESMRIFITVVETGSITRAAERLNLAKSAISKRLSELEQQLGVKLLNRTTRTSSLTEAGQV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ + +S K +G L++A + G L L F L+P++++ Sbjct: 65 YLNKCKLILDEVDDLHCHISSTSSKLNGVLKLAVPLTFGLKHLVPALDNFAKLHPELKLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +K ID+ D D AIR+ + +S+L + L IH +P YL + + Sbjct: 125 IDFSDKKIDLVEDGVDLAIRIGS-LNNSTLRAKPLAPIHHVLCVSPDYLTEHGHITTPND 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ + + + + ++ + P S N+ + V G G+ P Sbjct: 184 LKSHKLLRYSQ---QPLSGVELIDNNNKTMTVPMESFCIANNGDFLKTMAVSGHGVLFTP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +IV + N +L+ IM D S Y YPE K++ +F+ Sbjct: 241 KFIVWEELANGSLIPIMTDYRFNSIKAYAVYPETRYLPRKVRMLIDFL 288 >gi|162147153|ref|YP_001601614.1| transcriptional regulator protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544209|ref|YP_002276438.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785730|emb|CAP55301.1| Transcriptional regulator protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531886|gb|ACI51823.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 295 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 123/272 (45%), Gaps = 12/272 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F VA +GSF+ + + SQ +ISR I+ LE G LF R R L +TE G L Sbjct: 6 ALHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMTEDGRSL 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 EV LET + L SG +R+ T G G L E L +PD+ ++L Sbjct: 66 LPHAYEVLEILETAETALGRRRASVSGLVRLGVTTAFGL-YTTGRLGELLEQHPDLSVEL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 I+ + D+ + D A+R+ + I SLI R+L T+ A A P YL P ++L Sbjct: 125 IMRDGFGDLVEEGLDLAVRVGE-IAEGSLIARRLGTVKRIAVATPAYLDRRGTPQHPRDL 183 Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I T+G + N +V G + NS +++Q + G GI LL Sbjct: 184 LNHPCIAYTYGGTRHDWHFEGNGEESVVAASGP-----FRANSSEAVLQATLAGMGIGLL 238 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 P + V ++ LVR+ D P Y + Sbjct: 239 PSFQVDEDVASGRLVRLFPDWTVPELPFYAVH 270 >gi|163751038|ref|ZP_02158269.1| Transcriptional regulator [Shewanella benthica KT99] gi|161329199|gb|EDQ00198.1| Transcriptional regulator [Shewanella benthica KT99] Length = 173 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++VF+ V SGSF+ AA+ LH++ SSI+R I LE ++ LF R R L LTE+G Sbjct: 2 LEQIKVFHQVVDSGSFSQAAQVLHMAPSSIARNIDNLEAQLKTTLFKRSTRQLILTEEGR 61 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + ++ + E++ + P G LRI+ G L + EFL +YPD+QI Sbjct: 62 YFYQQSGKLVENADILLAEMRGTQDTPQGLLRISVFESFGNLCLAPIIPEFLQMYPDVQI 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV 161 L LDNK +D+ D D AIR+ P Q S L RKL+ Sbjct: 122 DLDLDNKLVDLHSDNVDLAIRIGVP-QDSGLKARKLL 157 >gi|170720874|ref|YP_001748562.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169758877|gb|ACA72193.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 312 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 139/288 (48%), Gaps = 14/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F +GSFT AA+QL L++S++ + I LE + ++L R R L++T+ G Sbjct: 7 NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQV 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ V L+ + L PSG+LR++ + LG+ + +++ L +P + + Sbjct: 67 LYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIEYCLKDWPSLSVD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D A+R+ P + S L+ R + M A+P YL EP + ++ Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPTYLAEHAEPKTPED 186 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H + F G L+P W V+ + LQ++S S+ Q V G GI Sbjct: 187 LTGHQCLHFVSGGRLLP-------WNFRVNGSAVSVTHGGRLQMDSAESLHQSAVAGLGI 239 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A LP Y+V D+ LV+++ + + YP + K++ F Sbjct: 240 ATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLF 287 >gi|54303246|ref|YP_133239.1| transcriptional regulator [Photobacterium profundum SS9] gi|46916674|emb|CAG23439.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 1/187 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF V S SF+ A LH++ SS++R I LE ++ + LF R R L LTE+G Sbjct: 3 DLVRVFTQVVESSSFSKAGHALHMAPSSVARNIDNLEKQLRVTLFKRSTRQLLLTEEGQY 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S++ + + +++ PSG LRI+ G + L FL YP++ + Sbjct: 63 FLIGASKLMEDADQLIRSMDKTNDVPSGTLRISVFESFGNLCINPILPAFLERYPNVTVD 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LD++ +D++ + D IR+ +P+ SSL R L+ H A+P YL+ C P + +E Sbjct: 123 IELDDRMVDMNAENIDLGIRIGRPVD-SSLNARMLMPNHTILCASPSYLERCGTPTTPEE 181 Query: 186 LDKHNLI 192 + +HN + Sbjct: 182 VSQHNCL 188 >gi|154246871|ref|YP_001417829.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160956|gb|ABS68172.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 292 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 138/289 (47%), Gaps = 15/289 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +GSF+ AA Q+ + Q +IS+ I+ LE + ++L R L T+ G + + Sbjct: 7 MQVFVTVVEAGSFSAAARQIGVGQPAISKTIAQLEERLQVRLLVRSTHSLAPTDAGVRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E + + SG+LR++ + L+ L EFL +PDI+I ++ Sbjct: 67 ERARAAIREADEAELEARGAGAGLSGRLRVSAATTFARLLIVPRLPEFLARHPDIEIDVL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID+ + D A+R+ + + S+ I R++ A P YL PL +L Sbjct: 127 LDDRVIDLVSEGIDMALRMGE-LTDSAAIARQIARSRRSVIATPAYLSRAGTPLVPADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H I + L +W T R E ++ +++++ I + G+ + Sbjct: 186 THEAIVYSQL------GASW--TFRRNGTEASVAVRGRVRLSAAEGIRAAVLADLGLTVN 237 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D++ ++ + R++ED P ++ +P + K +AF +++ Sbjct: 238 SDWMFAPEIESGAVRRVLEDWELPPVDLWAVFPTGRLASAKARAFADYV 286 >gi|311105376|ref|YP_003978229.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760065|gb|ADP15514.1| bacterial regulatory helix-turn-helix protein, LysR family protein 57 [Achromobacter xylosoxidans A8] Length = 310 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 135/279 (48%), Gaps = 5/279 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA SGSFT AA +L +S +S+S+ +S LE ++G+KL R R L+LT+ G L + Sbjct: 14 FVRVADSGSFTAAAHRLDISTASVSKSVSLLEAKLGVKLLNRTTRNLSLTDDGELLLQRC 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E + E+ +S P GKLR+ + LG+ ++ L YP++ I + Sbjct: 74 RHILLEVEAAEAEVTGASESPRGKLRVHAPVGLGRKVIMPALLSLTARYPELSINADFSD 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +++ + D IR+ S +I + L + A+P YL P + EL++HN Sbjct: 134 RIPNLAEEGLDATIRI-GVTADSRVIAKNLSQLRYVTCASPAYLAAHGTPTTPAELERHN 192 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 + + ++++ +R P L VN +I+ V G+GIA + +I + Sbjct: 193 CLAYVQWQTGRYHEWDFQKGDERYTITPG-GNLNVNHPEAILDAVVAGAGIARMASFIAE 251 Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + L ++ D + P V Y + +++AF Sbjct: 252 SAVMDGRLKLVLTDWMAPGAPVQLVYLPNRHLSPRIRAF 290 >gi|182678435|ref|YP_001832581.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634318|gb|ACB95092.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 296 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 142/290 (48%), Gaps = 19/290 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A + SF A +S S++ + I+ LE +G++LF+R+ R + LT +G+ + Sbjct: 9 AFVSAAEALSFVEAGRLHGVSASAVGKTIARLEARLGVRLFHRNTRSMKLTAEGALFLQR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +L+ + EL + P GKLR++ +G LL L EF+ YP++++ + Sbjct: 69 CHRILGELDAAEQELSDIRAAPKGKLRVSLPA-IGTMLLP-VLSEFIQRYPEVELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ + + L+ R+L H H A+P YL+ P S EL +H Sbjct: 127 DRKVDLIDEGFDAAVRIGE-TDDTRLLSRQLGVFHRHLVASPDYLEKVGRPESATELPRH 185 Query: 190 NLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + T G + P + + + + +S + NS ++ + G G+A L Sbjct: 186 PCLLYRFPTTGKIEPWPVPGWESI------LSSRELSTVSCNSIETLTYLALEGRGVACL 239 Query: 245 PDYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+ VK DN L R++ ++ + +P + + KL+AF + + Sbjct: 240 PDFEVKSALADN-KLERLLVTEVSTPRAMTILWPTSKQLAPKLRAFIDLL 288 >gi|312959668|ref|ZP_07774185.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311286385|gb|EFQ64949.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 298 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 23/291 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F A GS+ AAE+L +S +++ ++ LE+ +G +L R R +LTE GS + Sbjct: 8 MNAFVTAAELGSYARAAERLGMSPQMVAKHVAALESRLGARLLNRTTRRQSLTELGSAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + E Q + P GKL+I + G + L + FL +PD++I L Sbjct: 68 ERCKHILTEAEAADSLAQIMNDTPRGKLKITAPVTFGSHSLMPLITGFLRDHPDVEIDLH 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + + A R+ P+ ++ L R L + AAP YL P +L+ Sbjct: 128 LTDRFVDLVEEGYEAAFRI-GPLATTGLTARPLAPYRLVVCAAPAYLAARGTPRVPADLE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR---------PIGEPRISCLQVNSYLSIMQYCVLG 238 H +C+ W DR P S LQ+N ++M + G Sbjct: 187 HH----------ECLGYAFWSRPADREWVFFQGTTPYKVQVASRLQINESRALMSAALDG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI L P+ ++ LVR++ D PS +++ Y + T KL+ F Sbjct: 237 FGIVLGPEDFLRGALARGELVRVLPDFDAPSRSMHLVYTANRQRTAKLRRF 287 >gi|307129017|ref|YP_003881033.1| hypothetical protein Dda3937_01584 [Dickeya dadantii 3937] gi|306526546|gb|ADM96476.1| Hypothetical transcriptional regulator ycjZ [Dickeya dadantii 3937] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 6/287 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L F +VA+ SFT AA +L +SQS++S + LE +GI+L R R ++LTE G Sbjct: 5 NFSDLISFRMVAQEKSFTRAAAKLGISQSALSHAMRSLEERLGIRLLTRTTRSVSLTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L S ++LE +L E KP+G +R+ +L LK FL +PDI Sbjct: 65 ERLLGNISPSLNELEFALEDLGEMRDKPAGNIRLTAGEHAVNFVLWPVLKPFLSQHPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI + D +RL + + + R + M +P Y N P + Sbjct: 125 LEITVDNTLTDIVNERFDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFANHTAPDTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q L +H I +P F W + D R I L N+ + + G G+A Sbjct: 185 QSLQQHRCINM--RLPTLGGLFAWEFSRDGREIRVRVDGQLTFNNLQHRIDAALSGLGLA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P+ ++ + L++++E P Y YP ++T F Sbjct: 243 YVPEDTIRQAVADGRLIQVLESWCEPFPGYYLYYPSRKQHTAAFSLF 289 >gi|254000005|ref|YP_003052068.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986684|gb|ACT51541.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4] Length = 310 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 20/311 (6%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR R+ GS A Q+ ++ ++ S+ I LET +GI+L R R + LT+ Sbjct: 2 DTLRSIETFVRAVEHGSIAAGARQIGITAAAASQNIQRLETTLGIRLLSRSTRSMALTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ LE + + E +P G+LRIA + G+N++ + F+ YP I Sbjct: 62 GQLYYNAVKDILRDLELAKSSITEFQGEPQGRLRIACSAAFGRNVIADMIPPFMRRYPRI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++LI + ID + D +IR ++ ++ +I R + + + A+P YL P Sbjct: 122 SVELITTDNPIDHITENIDISIRFKQQLE-PGMIARHIARVPILFCASPDYLARAGRPTQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241 +EL H +TF +P W D EP I+ + N ++ + V G+GI Sbjct: 181 PEELSHHACLTF--RVPASGRMLGWGFLRDGLRFEPDITPTVNSNDIDALARLAVGGAGI 238 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTV---------YFCYPEALKNTGKLKAFRNF 289 A L ++ + D+ L + T V Y Y + T KL+ F ++ Sbjct: 239 ARLGAFVAQPLIDSGQLEALFTGNATSEGAVTADIEPLDFYVSYQDKHAMTHKLRVFVDY 298 Query: 290 IF-LKARDWKF 299 + + +WK Sbjct: 299 LVEVMPEEWKM 309 >gi|117921163|ref|YP_870355.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117613495|gb|ABK48949.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 295 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 17/254 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 ++ D LR F VARSGSF AA+ L + S++SR+I LET++ ++L R A + LT Sbjct: 4 NYSLDDLRCFCAVARSGSFKEAAQSLGMPLSTLSRRIRQLETDLQLRLLNRDAHRVILTS 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ +L +L +P GK+RI+ I+ G + L+ +FLL YPD Sbjct: 64 IGEQYFERSVALFDELNNIDEDLHRDKYQPQGKIRISAPINSGTHFLRSIFYDFLLQYPD 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQ+ L N IDI + D A R+ P+ + I R L IH + P Y + Sbjct: 124 IQLDLSFSNSLIDIEAEGMDVAFRVGNPV-VENWIARPLKHIHFILCSHPDY--DISSIT 180 Query: 182 SIQELDKHNLITFGDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 + +L H I +IP E+F++ P R L+V+ + + Sbjct: 181 TPDKLCGHPTIICHPMIPWQLVHKTTGEEFDY-----HPNKGVR---LEVDELMLLTHAI 232 Query: 236 VLGSGIALLPDYIV 249 G GI +PDY Sbjct: 233 KTGIGIGYVPDYFA 246 >gi|299069993|emb|CBJ41279.1| Putative HTH-type transcriptional activator aaeR [Ralstonia solanacearum CMR15] Length = 301 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 140/307 (45%), Gaps = 40/307 (13%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V G+F AA +L L+ SSIS+ + LETE+G+ L +R R L+LTE G Sbjct: 9 RMAIFARVVELGAFNRAARELGLTTSSISQHVRALETELGVTLLHRSTRKLSLTEAGRVY 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V H Q ++ E +P+G+LRI +L L L++F+ +P + I+ Sbjct: 69 YEECANVVHAAARGQQKVAELRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAIRF 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ D A+R+ + +Q SSL+ R++ AAP YL+ P + Sbjct: 129 ELGDEKIDLVEHRVDLAVRIGE-LQDSSLVARRIAWFDELICAAPEYLERVAVPAT---- 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----------SCLQVNSYLSIMQYCV 236 P+ + D +WL + P+GEP + L+V+ L+ Q Sbjct: 184 ------------PQGLADLDWL--IFTPLGEPAFVQLRDGQGHEARLRVHGRLATNQAQT 229 Query: 237 L------GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 L G G+A L + LV ++ + F VY P ++ LK R Sbjct: 230 LKALTLDGHGVARLLKVDIGAELAQGRLVPLLPEWRLAGFGVYAITPR--RDAQPLKVTR 287 Query: 288 NFIFLKA 294 L+A Sbjct: 288 CIEHLRA 294 >gi|134292495|ref|YP_001116231.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135652|gb|ABO56766.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 307 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 147/299 (49%), Gaps = 31/299 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF +V R SF+ AAEQL +S + +S++I+ LE ++G +L +R R +T+T+ G + Sbjct: 8 DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTDAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ ++ + P G LRI+++ G++++ L +F YP + ++ Sbjct: 68 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D +R+ I + LI R+L + A+P YL P ++ + Sbjct: 128 LDLFDRLVDVVGEGYDVDVRIGDEI-ADHLIARRLAANYRVLCASPEYLARRGTPRTLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233 L H+ + + D P+G R+ + ++V LS +Q Sbjct: 187 LASHDCLAIKER--------------DHPLGVWRLNVRGETATVKVGGALSTNHGEVAVQ 232 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + + G GI L + + L R++ D I P+ ++ YPE + + K++ +F Sbjct: 233 WALAGRGIVLRSIWEAGPLIERGELRRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDF 290 >gi|16761686|ref|NP_457303.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143170|ref|NP_806512.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25319788|pir||AC0854 probable LysR-family transcription regulator STY3037 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503987|emb|CAD06018.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29138803|gb|AAO70372.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 310 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 13 RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 73 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 132 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 187 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 241 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 242 GSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 297 >gi|27377795|ref|NP_769324.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350940|dbj|BAC47949.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 307 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 14/297 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF A GS + AAE L +S ++ SR +S LE + ++L R+ R L LTE G +L Sbjct: 6 QLEVFAKTAELGSLSKAAEALRMSNAAASRHLSALEERLAVRLIERNTRRLWLTEAGQEL 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +S V +L + + + ++ P G LR+ +++ L L F YP + +Q+ Sbjct: 66 LERSSRVLSELAEAEDIVSDRALSPQGMLRVTSSLSFAVIYLAPMLPAFRARYPKLNMQI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 N+ D D AIR R+ S++I R++ + AAP YL + E +L Sbjct: 126 TTANRYPDFIEAGIDVAIRTREQEPDSNIIVRRIGQMRRVLAAAPSYLASAGELEQPADL 185 Query: 187 DKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 +HN++ + D + N TV RI+ L N I + G GI Sbjct: 186 ARHNMLVYNLANDPYSLRLRKGNGAQTV-------RITPTLDSNDGQVIRGAALAGLGIL 238 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + P YIV+ + LV ++ D P T+ Y K++AF +F+ R+ Sbjct: 239 IQPLYIVQSDIAAGRLVPVLLDWELPLLTMNIAYQNRAGLPAKIRAFSDFLVTHIRE 295 >gi|315182427|gb|ADT89340.1| hypothetical transcriptional regulator, LysR family protein [Vibrio furnissii NCTC 11218] Length = 293 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 9/247 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L + V SGSF+ AAE + + + +SR +S LE ++GI + R R L LTE+G + Sbjct: 6 DDLEILITVVDSGSFSQAAEVMDVQVAKVSRAVSRLEQQLGITILNRTTRRLELTEEGKR 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +L + ++ P GKLR+ + L ++EF YPDI ++ Sbjct: 66 FVESVRAGLQQLRQAEEDIVSRGELPKGKLRVDAASPFMLHQLAPLVREFHAAYPDIDLE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ K + S+L R L ++ A+P YL P + QE Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LNDSTLHARPLGKSALYVVASPDYLAQRGFPTTPQE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+++ F P+ + + T EP I+C +S ++ Q + G+GIA L Sbjct: 185 LHQHDIVGF--TAPRTLNIWPLNGT---EFIEPTIAC---SSGETVRQLVIAGNGIACLS 236 Query: 246 DYIVKDN 252 ++VK++ Sbjct: 237 GFMVKED 243 >gi|262403089|ref|ZP_06079649.1| transcriptional regulator [Vibrio sp. RC586] gi|262350588|gb|EEY99721.1| transcriptional regulator [Vibrio sp. RC586] Length = 301 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGEIFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPVYFTQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHQETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVGFSLIYHKDKYQPVRLKRFIEF 290 >gi|323524526|ref|YP_004226679.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323381528|gb|ADX53619.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 315 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 144/288 (50%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF AAE++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+V +LE + + +SV P G+LR+++ G + + + ++ YP + + + Sbjct: 67 ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R + H+ A+P YL+ P + +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARPIAMAHLVLCASPDYLRRRGTPKTAADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 +HN I + + + L T + R+S + ++L + VL G+GIALL Sbjct: 187 ARHNFIQYAGV-----SGLDVLQTTGE-VARVRLSGNLIVNHLEAQRVMVLQGAGIALLG 240 Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNF 289 ++ + LV ++ D + P ++ Y + K+++F +F Sbjct: 241 TEVIGADLAAGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDF 288 >gi|190575769|ref|YP_001973614.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190013691|emb|CAQ47326.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 301 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 7/290 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ R+F V SFT AA+QL L +S++S I+ LE +G +L R R + T G Sbjct: 5 DRFRIFTRVVECSSFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVATTHDGDV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + ++E + ++ +P G L+I +G+ ++ L +F +P ++++ Sbjct: 65 FHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRIIAPALPDFFARHPQVEVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D D +R+ + + SSL+ R L + AAP YL+ P + Sbjct: 125 LGMTDRAVNLIEDGCDAVLRVGQ-LGDSSLVARTLGQLDFVNVAAPAYLREYGVPQQPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H + + +E + W T R + P ++VNS + + CV G G+ + Sbjct: 184 LQQHRAVNYASPTTARVEPWEWQEGTQLRTLPMP--GWVRVNSAEASIACCVAGLGLLQI 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P Y V+ + LV +M + V P +++ F ++ Sbjct: 242 PRYDVQAELQSGALVEVMPQHVAQPLPVTLLQPHRQHRAQRVQVFIEWLL 291 >gi|16766218|ref|NP_461833.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16421461|gb|AAL21792.1| putative LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248048|emb|CBG25882.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995042|gb|ACY89927.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159471|emb|CBW18990.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131264|gb|ADX18694.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989783|gb|AEF08766.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 310 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 19/294 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 13 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 73 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 132 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239 E + +P + W T + + + + V+S S+M + + GS Sbjct: 187 LESLAQAEWIIHERLPTPLR---WTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGS 243 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 244 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 297 >gi|257485224|ref|ZP_05639265.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010879|gb|EGH90935.1| regulatory protein LysR, substrate-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S + + I LE +G++LF+R R + +T +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LET ++EL + P G+LRI ++ L L+ + EF+ YPDI++ + Sbjct: 69 CRRILSELETAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIIEFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ R++ + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSRRMGGFQLKIVGAPDYFSRRGTPQHPADLSRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P + +W + R G + QV N+ ++ G GIA LPD Sbjct: 186 ACLLHK--FPSSGKFEHW--PLRREAGADDLDLPQVMVCNTTEILVDVARAGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ + LV I+ D + + +P + + +L+ F +F+ Sbjct: 242 FMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFM 288 >gi|332529454|ref|ZP_08405413.1| transcriptional regulator, LysR family protein [Hylemonella gracilis ATCC 19624] gi|332041100|gb|EGI77467.1| transcriptional regulator, LysR family protein [Hylemonella gracilis ATCC 19624] Length = 317 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 18/294 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R V +GSFT AA+ L++ +++S+ + LE +G++L R R +T+T +G + + Sbjct: 7 MRALARVIEAGSFTRAADSLNMPIATVSKLVRELEKHLGVRLLQRTTRRVTVTPEGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E + KP G LR+ +++L L +F+ YPDI+I L Sbjct: 67 AKSGRILRDIEDIDGAFNLARGKPRGHLRVDVGGSTARDVLIPILGDFMARYPDIRIDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + +K ID+ + ADC IR ++SSSL+ R+L + A+P YLK P EL Sbjct: 127 VSDKSIDMVGENADCVIR-GGAMESSSLVARQLGEAVLITCASPGYLKQFGTPAYPDELK 185 Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240 + H L+++ G +P F + D+ E ++ + +N + M CV G G Sbjct: 186 NGHRLVSYVSSNTGRPVP-----FRFARNGDK--SEIKVDHIIGINESNAHMAACVAGLG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + Y + LV I+ + + YP+A T +L+ F +++ Sbjct: 239 VIQTFGYAAATALRDGTLVEILPEWRPARYPFQIVYPQARHMTHRLRVFVDWLL 292 >gi|27367995|ref|NP_763522.1| transcriptional regulator [Vibrio vulnificus CMCP6] gi|27359568|gb|AAO08512.1|AE016813_264 Transcriptional regulator [Vibrio vulnificus CMCP6] Length = 307 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 146/293 (49%), Gaps = 7/293 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + L +F V GSF+ AA+QLHL++S++S++I+ LE ++G +L R R L+LT Sbjct: 1 MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + ++ + + E +P G+L+I + G + + EFL YP Sbjct: 61 EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ L L+++ +D+ D IR+ + S+LI ++L A+P Y+ P Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +HN + + + ++ +L + P+ + + VN+ +I + + G G Sbjct: 180 SKPADLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPKGNFI-VNNSEAIRRALLAGIG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA +P +I+ + LV +M + P +Y +PE K++ F +F+ Sbjct: 237 IAQMPTFIIGKELRDRKLVTLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFL 289 >gi|270262684|ref|ZP_06190955.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043368|gb|EFA16461.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 299 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 17/289 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VA + SF+ A QL +S S++ + ++ +E + ++LF+R R +TLT +G+ Sbjct: 9 AFVQVAETRSFSDAGRQLGVSSSAVGKSVARMEERLEVRLFHRSTRSVTLTAEGALFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ ++EL ++ P GKLRI ++ L L+ L F+ YPDI++ + Sbjct: 69 CRRILAEIAAAELELADTRAAPRGKLRI--SLPLVSGLMMPVLTAFMHRYPDIELDVDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--- 186 ++ +DI + D +R +P S L+ R+L + A+P YLK P +L Sbjct: 127 DRLVDIVEEGFDAVVRTGEP-ADSRLVSRRLGVFELVLVASPDYLKRRGVPEKPADLLGH 185 Query: 187 --DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H T G P + A + P + + N+ +++Q G GIA L Sbjct: 186 ACLQHKFPTTGRFEPWPLRLLPGEALPELP------ATMICNTTEALVQVAQAGLGIACL 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD++V + + L R++E T +P + KL+ F +F+ Sbjct: 240 PDFMVHEALQSGELRRVLESYTEHQGTFRVIWPSSKYLAPKLRVFIDFL 288 >gi|215485408|ref|YP_002327839.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|215263480|emb|CAS07806.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] Length = 297 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S I LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLACSPLPERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|296161687|ref|ZP_06844490.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295888001|gb|EFG67816.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 339 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 18/295 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R+F +VA++GSF+ A L+L+ ++SR +S LE + ++L +R +R +TLTEQG Sbjct: 21 SMRIFTLVAQAGSFSAVARSLNLTTGAVSRAVSELEERLKVRLLHRTSRRVTLTEQGKIY 80 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + + + E + + P G LR+A +GQ + E+ LYP++ +QL Sbjct: 81 SRSALRILADVADAEGEARSAHETPEGVLRVALNEAVGQEWVMLAAGEYRKLYPNVAVQL 140 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ AD A+ + S L+ R L T A+P YL+ R P ++ L Sbjct: 141 KSFVQPPDLFSGIADVALISASSLADSDLVCRVLGTTRNILCASPAYLREHRAPRELRGL 200 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLP 245 H + +P + ++W + G P L V S S++ G GI ++P Sbjct: 201 KSHAGLVAD--VPG-LPSYDWFFDRTQDDGALPMSGKLIVTSVDSLICAMRQGMGIGMVP 257 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 V + +L+R++ S +Y YP R F+ K R W Sbjct: 258 AIAVAGGLRDGSLLRVLPAHTGGSMNIYALYPS-----------RRFVDAKIRTW 301 >gi|262194884|ref|YP_003266093.1| LysR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262078231|gb|ACY14200.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM 14365] Length = 311 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 18/297 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + VF V + +F AA L LS+S++S++++ LE +G +L R R L LT+ G Sbjct: 8 DPGAILVFVEVVKQQNFRAAARALGLSKSTVSQRVADLEEHLGARLLTRTTRSLKLTDIG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + HR + L + + +PSG+LR+ ++LG +LL L + YP+++ Sbjct: 68 ASFHREVAPALDALRNAEALVGTLQARPSGRLRLTAPVELGHDLLGSVLGRYATQYPEVE 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLS 182 I ++L ++ +++ + D AIR+ P+ S+L+ R+L + + A+P YL P + Sbjct: 128 IDVVLTDRMVNLVEEGFDLAIRV-GPLADSNLVSRRLRMPQELCTVASPRYLAQRGTPKT 186 Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVL 237 ++L H L+ G P W VD G+ R + VNS+ + + + Sbjct: 187 PRDLAAHRCLVMTGAQTPSA-----WRYRVD---GKERAFSVTPHIAVNSFTVLREVALA 238 Query: 238 GSGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +GIA +P Y D L R++ YP A + L+A + + Sbjct: 239 DAGIARMPLRYAEGDIAAKRLRRVLARYAPQGRATLVVYPPARHISPALRAMVDLLV 295 >gi|50120417|ref|YP_049584.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49610943|emb|CAG74388.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 300 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 10/289 (3%) Query: 5 WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +++L AR+G S+T AA L +S S+IS+ I LE +G+ LF R R L LT Sbjct: 7 FERLTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEQHLGVTLFTRTTRSLVLTA 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +LH + E + + S +PSG LRIA + +G +++ L F L+P Sbjct: 67 EGRELHERAIRLLLDAEEIEQVAKRSRAEPSGTLRIAASFPIGLHMIAPVLPTFCALHPK 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I L L ++ I I + D AIRL + S+L+ R+L + YA+P YL C P Sbjct: 127 VSIDLRLSDRVISIIDERIDIAIRLGD-LADSNLLSRRLSPYKLCCYASPEYLATCPPPR 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL H + + F W V +R I S + V++ +++ G+G Sbjct: 186 HPNELMVHKTVNLR--YQNTGQVFRWPFRVGEREIEIVPPSNIIVDASEAVIAAVSAGAG 243 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I + ++ L+ ++ D + + E+ ++ ++AF Sbjct: 244 IGMATSFMTASLVRKKALIPVLSDFAIERHNISAVWHESRRSNPAVRAF 292 >gi|296103659|ref|YP_003613805.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058118|gb|ADF62856.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 310 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE + ++L +R R L++T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVRLLHRTTRKLSVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQ Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC +R + I SLI R + + + YAAP YL+ P + Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-ITDQSLIARHVGDLQIGVYAAPSYLERLGPPSHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H + F G + P + + + G ++ N+Y+ + + Sbjct: 183 ELENTDHRRVGFLSSRTGKIDPLVLRSESERIEI---TGSYVLAVDDGNAYI---EAGLA 236 Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP Y+ + L+ + E +Y +P +L+ F ++I Sbjct: 237 GLGVIALPVYMAAAHQARGALIPLFEHWRIAPMPLYLAFPPNRHVNARLRVFIDWI 292 >gi|149187221|ref|ZP_01865519.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] gi|148838757|gb|EDL55696.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] Length = 296 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 146/310 (47%), Gaps = 41/310 (13%) Query: 3 FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S+IS+++ LE +G++L R R +T TE Sbjct: 1 MDWISCINTYIRVVEEGSFNGAARRLNTTSSAISKRVHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ + + + ++ E + + P+G L+I TI +G L L +FL YPD Sbjct: 61 AGALFYQRSKDSLDRFQSIIDETRSVNETPAGLLKIGATIAVGSKFLVQYLNDFLTQYPD 120 Query: 122 IQIQLI------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 I+IQL L + ++D+ + R + + S S+ Q L + YAAP Y++ Sbjct: 121 IRIQLTTTIPGQLPDTNLDVFIS------RELETLNSLSMRQTSLFEQRIGFYAAPSYIR 174 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---------VN 226 P SI EL +HN++ +G +RP E +IS Q Sbjct: 175 EFGAPQSIDELKQHNILIWG----------------ERPQREYKISKTQRVMLSGNFATT 218 Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKL 283 + ++ G G+ + D ++K++ LVR++ ++ TVY YP+ + Sbjct: 219 NPEALFYAAKNGMGVLISNDVMIKEDVKSGALVRVLPEIQALDSTVYAYYPKLDYEHTRT 278 Query: 284 KAFRNFIFLK 293 K F ++I ++ Sbjct: 279 KLFLDYIKMR 288 >gi|50085788|ref|YP_047298.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49531764|emb|CAG69476.1| putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 295 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 7/249 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SF AA++L++ S++SR+I LE E+G++L +R R + LTE G Sbjct: 5 NDMALFVEVCKVMSFRKAADKLNMPSSTLSRRIGHLEKEIGLRLLHRTTRKVELTEAGQV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E KPSG LRI+ +D G +L L EF LYP+I + Sbjct: 65 YFERCKPIVSEALLAHEQLGEMLSKPSGLLRISLPVDFGVMILAPLLTEFAELYPEINFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L K +D+ D AIR+ P S+LI KL+ YA+ YL+ P + Sbjct: 125 IDLTPKLVDLVKQNIDVAIRMGNP-PDSNLIGHKLMQFRGQLYASADYLEKNGHPNHPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H ++F + + + N TVD I +NS + + +LG GI P Sbjct: 184 LVHHQCLSFPNNLLWKLNHKN--ETVDVKI----TGRFMLNSVGMMRKLSILGQGIIFTP 237 Query: 246 DYIVKDNPN 254 IV D+ N Sbjct: 238 RAIVYDDIN 246 >gi|33598053|ref|NP_885696.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33602945|ref|NP_890505.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33568576|emb|CAE34334.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33574482|emb|CAE38820.1| LysR family transcriptional regulator [Bordetella parapertussis] Length = 297 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 9/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF AA++ ++S ++RQ++ LE + G++L R R L+LT+ G + Sbjct: 1 MQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYGVRLLNRTTRKLSLTDAGRAFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + LQ +P+G+LRI+ + G L + ++LL YP++ I L Sbjct: 61 DRIRPVLAELAELDLALQAQGSQPAGRLRISAPVSFGVLHLGPAIADYLLRYPEVVIDLD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D A+R+ P+ SSL+ R L + A AAP YL+ P ++L Sbjct: 121 LNDRVVDLVEEGYDVAVRI-GPLVDSSLVARPLAPQQLVACAAPAYLERYGAPAQPEDLR 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H + + +W D R++ + N+ + + G GI L P+ Sbjct: 180 RHRCLHYA----YASTGNDWHFEKDGQTHVVRVNATFRANNGDVLRTAALAGHGIILQPE 235 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++V ++ L ++ D T+ YP + K+++F Sbjct: 236 FLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKVRSF 278 >gi|307727134|ref|YP_003910347.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587659|gb|ADN61056.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 305 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA + +S +++SR ++ LE +G +LF R +R L++TE G Sbjct: 6 DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEDRLGARLFNRTSRQLSVTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++Y + E + +E SV+P G +R+A + G + L F +YP + Sbjct: 66 RTICEKAGDIYRQAEEAESAARELSVQPRGLVRLAVPMSFGLRWVAPLLPAFFRIYPQVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D A+R+ + SSL+ R+L + + A+P YL+ P Sbjct: 126 IDLHLSDASVDLVAEGFDAALRIAA-LPDSSLVARRLCAVTQYLVASPQYLEREGWPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +EL +++ + F A + P+ L+V + +++ + G I Sbjct: 185 RELVDRPCLSYAYRAGSEVWRFRNDAGEEEPVVP--TGPLRVTNSEALLPTLLDGLAIGE 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+++ + + L I+ D +YF P A K++ ++ Sbjct: 243 LPEFMAGEYLADGRLQAILTDWSLTKGGLYFVTPSARARPAKVRVLSDYF 292 >gi|218677018|ref|YP_002395837.1| Transcriptional regulator LysR family [Vibrio splendidus LGP32] gi|218325286|emb|CAV27288.1| Transcriptional regulator LysR family [Vibrio splendidus LGP32] Length = 303 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++AR G+FT AAE L +S+S +SRQ+S LE ++G+ LF R R L LT G L+ Sbjct: 12 IRSFVLIARLGNFTKAAEDLDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTHAGQDLY 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + G +++ LG+ ++ + EF+ LYPDI I L Sbjct: 72 ARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYPDISISL 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ ++ + I RKL+ I M A+P Y +P ++L Sbjct: 132 DFSSNRVDLIEDAFDIAFRM-GSLEDAGFIARKLLDIEMGTLASPDYFARKGKPSHPKDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ +T + K F L + + LQ + ++Q G+GI +P Sbjct: 191 IHHDCLTGS--VRKW--SFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNGIIRVPT 246 Query: 247 -YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y +++ + L+++ E+ + P Y +++ F +F+ Sbjct: 247 IYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFV 293 >gi|165976613|ref|YP_001652206.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876714|gb|ABY69762.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 297 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 25/303 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF VA +GSFT AE+L LS+ ++R ++ +E +L R R ++LT+ G Sbjct: 7 IQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 K+ +TS + T + EL+ G LRIA+ G L ++ FL +P Sbjct: 67 EYCKKMTELTSAIEQDFLTQRGELR-------GSLRIASNAAFGSTHLLNAIRTFLAKHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQLIL + +++ + D A+R +++ R L T H A P YL Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTI 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S QEL H + ++ K ++ ++ + E S L +N +++ + + G Sbjct: 179 HSPQELANHRYLAHANVNRK---EWTFIKDEQETVLE-LTSQLTINDTGALLNFTLADGG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 IA+LP Y ++ N L ++ D P++ VY YP + +++F +F+ F Sbjct: 235 IAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEEFEGK 294 Query: 295 RDW 297 DW Sbjct: 295 GDW 297 >gi|21244486|ref|NP_644068.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21110154|gb|AAM38604.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 308 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 17/297 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AAE LH+S++S ++ + LE + +KL R R + +T G+ Sbjct: 4 FDAMRAFARVVETGSFTKAAEHLHMSRASATQLVQQLEARLRVKLLNRTTRRVQVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++ P G+LR+ L +L L F YP IQ+ Sbjct: 64 AYYERVLRLLADMDDAETSLSVAATSPRGRLRVDVPSPLALLILMPALPAFHARYPQIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR I SLI R + + YAAP YL+ P Sbjct: 124 DMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPTHPT 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ +H + F +P M+ + V G ++ N+YL+ + Sbjct: 183 ELENTRHRCVGFMRWGSSTTVPYVMQRGDEAVRVH---GRHVVAADDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ LP Y+ + LV I +D + + +P + KL+ F +++ Sbjct: 237 GMGVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVI 293 >gi|186470421|ref|YP_001861739.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196730|gb|ACC74693.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 309 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 13/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + F VA + SF AA QL ++ S ++ +I LE V LF+R R + L+E G Sbjct: 6 SIEAFVRVAETSSFAEAARQLGVTSSVVTNRIQQLEKFVDAPLFHRSTRHVRLSEVGEAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R +EV ++ +++E P+G+LRI +L EF YP IQ+ + Sbjct: 66 YRECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGASLAEFNRRYPGIQLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 I++++ +D + D A ++ PI S SLI+R+L + AAP YL+ P ++L Sbjct: 126 IVNDRVVDPIEEGFDVAFQIFPPI-SESLIERRLFPVRRLFCAAPSYLREYGTPQHPRDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 +H + + W T + E + ++ NS + Y + G G+ LP Sbjct: 185 LQHTTALYSGYPSRN----RWTMTRGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + + +LV I+ D YP + K+KA F+ DW Sbjct: 241 TLVASAALLDGSLVPILTDYALSPLNFAAVYPATQRQALKVKALVEFL----ADW 291 >gi|33594327|ref|NP_881971.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33564402|emb|CAE43709.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|332383738|gb|AEE68585.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 303 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 9/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF AA++ ++S ++RQ++ LE + G++L R R L+LT+ G + Sbjct: 7 MQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYGVRLLNRTTRKLSLTDAGRAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + LQ +P+G+LRI+ + G L + ++LL YP++ I L Sbjct: 67 DRIRPVLAELAELDLALQAQGSQPAGRLRISAPVSFGVLHLGPAIADYLLRYPEVVIDLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D A+R+ P+ SSL+ R L + A AAP YL+ P ++L Sbjct: 127 LNDRVVDLVEEGYDVAVRI-GPLVDSSLVARPLAPQQLVACAAPAYLERYGAPAQPEDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + +W D R+ + + N+ + + G GI L P+ Sbjct: 186 RHRCLHYA----YASTGNDWHFEKDGQTHVVRVNATFRANNGDVLRTAALAGHGIILQPE 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++V ++ L ++ D T+ YP + K+++F Sbjct: 242 FLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKVRSF 284 >gi|254520898|ref|ZP_05132953.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219718489|gb|EED37014.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 293 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 23/292 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V F+ AA+ L LS + ++RQ++ LE + +L +R R ++ T G+ Sbjct: 5 EAMRVFVAVVERNGFSAAAQALDLSTAGVTRQVAALEKRLSTRLLHRTTRRVSPTSAGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + + +++PSG LRI + G L L + +P +++ Sbjct: 65 YYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRERFPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P S +LI R+L + AAP YL P + Q Sbjct: 125 LALSDRLVDMVEEGYDVAIRITREP--SPALIARRLGQSRVSLCAAPSYLAARGTPQTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 EL H C+ W A + P GE ++ S L N+ + + + Sbjct: 183 ELPAH----------ACLSYSYWAAGDHWPLQGPGGEVKVAVSSLLHANNGDVLREAAIA 232 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+ L PD++++D N LVR++ + ++ Y K+++F Sbjct: 233 GMGVILQPDFLLEDALANGRLVRVLPEWEASPIGIFAVYTSRSHLAPKVRSF 284 >gi|161523821|ref|YP_001578833.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351418|ref|YP_001947046.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160341250|gb|ABX14336.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189335440|dbj|BAG44510.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 322 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q+ KP+G LR+ LG+ L+ +L F YPDI + L Sbjct: 67 EHCVKILSEIAEADASFQKG--KPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLG 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + AAP YL EP I +L Sbjct: 125 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLRRVTCAAPDYLARHGEPREIADLA 183 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H + F G +P W+ +D +P+ + + VN + + + G G+ Sbjct: 184 GHYAVNFRATQGGRAVP-------WVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGM 236 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP + K++ F ++I Sbjct: 237 IQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWI 288 >gi|297579905|ref|ZP_06941832.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535551|gb|EFH74385.1| transcriptional regulator [Vibrio cholerae RC385] Length = 301 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEDLEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRSALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|218661983|ref|ZP_03517913.1| LysR family transcriptional regulator [Rhizobium etli IE4771] Length = 297 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 20/302 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+ + L +F SGSFT AA L + +S++S++++ LE +G++L R +R LTE Sbjct: 4 FNLNDLHLFVQAVDSGSFTAAARHLGMPKSTVSKRVAELERRLGVRLIQRTSRSFALTEL 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + E + ++ +P+G +R+ ++ Q L +L YP + Sbjct: 64 GREFFQHAQASVIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ + + ++ +DI + D A+R R P+ S+L+QRKL + A+P Y+ +P Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRAPLPDSALVQRKLASHPFFILASPDYISAHGQPR 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237 +EL +H I + + W T D G+ + LQ + +M+ V Sbjct: 184 RPEELAEHATIM------TSLTENQWRLTSDG--GDEAVVTLQSVMAADEPYVLMETAVA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLK 293 G GI LP + + LVR++ D S P G+L A R + FL+ Sbjct: 236 GLGITCLPTSVCRKALAEGRLVRVLPDWTAGSIETTILMPH---RRGQLPAVRAVVDFLE 292 Query: 294 AR 295 R Sbjct: 293 ER 294 >gi|182678439|ref|YP_001832585.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634322|gb|ACB95096.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 313 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 3/280 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ +R F V R GS + AA L L+Q ++ IS LE +G LF R +GLT T+ Sbjct: 5 IDWELIRSFLAVLRQGSLSAAARSLGLTQPTLGNHISQLEAFLGASLFTRSRQGLTPTQA 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + + + G +RI + +G +L L++F+ YP+I Sbjct: 65 ALAILPEAEAMDAAARAFARRASGETDAMRGAVRITASEVMGMEVLPLLLRDFMRTYPEI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L L N+ D+ AD A+R+ +P Q +L+ R + I + AYA YL+ P + Sbjct: 125 VVELSLTNRTEDLLRRDADIAVRMARPAQ-GALLTRHIGRIGLGAYAHRDYLETRSCPRA 183 Query: 183 IQELDKHNLITFG-DLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 I +L H LI D +P E + + R I + L+ +++L+ + G G Sbjct: 184 IDDLKSHVLIGLDRDRLPSVEGEPDDDVGGELRSILQNWPCTLRTDNHLAHLGAIRAGLG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 + + + + +P+LV I+ ++I P+ + E LK + Sbjct: 244 LGICQHGVARRDPDLVPILPEIIKPALDCWLAMHEDLKGS 283 >gi|152984517|ref|YP_001348180.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959675|gb|ABR81700.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 304 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 22/298 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS +D + F VA S T AAE++ LS+S IS+++S LE +G++L YR R + T Sbjct: 1 MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLEKRLGVRLLYRTTRNVEPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E G ++ +L + L+E+ + G+LRI T + G L + +F+ Sbjct: 61 EAGHFFYKAAKASLQELNNAAEIVALRENDL--CGELRIVTPMSFGTLWLSPIIADFMSQ 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P ++I L +D++ D + D +IR+ + + SSLI R L +P Y + Sbjct: 119 HPRLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAQRHG 177 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++++L +H + + + P + F D+P N+ ++ + G Sbjct: 178 SVETLEQLMQHECLGYNNASPSQVWTFEPAYPGDKPRAISPRGRFNSNNGQAMRDAALRG 237 Query: 239 SGIALLPDYIVKDN----------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ALLP +IV ++ P L R ++DVI Y Y A + K+KAF Sbjct: 238 QGLALLPLFIVAEDLGSGRLVDAAPGL-RPLDDVI------YAMYSRAAAMSPKVKAF 288 >gi|313496427|gb|ADR57793.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 295 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 10/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L+ + S+++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + ++ P GK+R+ T +G + YP + Sbjct: 62 GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + LI RKL + YA+ YL Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLRH 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H+ I + D + E L ++ P + + S ++ G GIA Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQAAARAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +LP+Y+ + +P LVR++ + I S+ + C L + +L+ +++ Sbjct: 235 VLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282 >gi|300723905|ref|YP_003713216.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC 19061] gi|297630433|emb|CBJ91098.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC 19061] Length = 313 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 13/297 (4%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +VF + GS AAE+L +S++ +SR ++ +E GI+L +R R ++LT G ++ Sbjct: 8 QVFVTIVEQGSLIAAAERLDMSRAMVSRYLAEMEQWAGIRLLHRTTRKISLTSAGESAYQ 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ++ E ++ + G LR++ + LG + L + EF +YP I + L + Sbjct: 68 RSLKLMELAEEIPVQQFSEAQTLRGLLRVSCSQSLGISALSAAIPEFTRIYPQIAVNLQI 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +NK I++ + D AIR+ ++ +LI R L T + AAP YL P + +L Sbjct: 128 NNKAINLIEERIDLAIRITNNLE-PNLIARPLSTCYSVVCAAPSYLAGKSIPQNPADLAS 186 Query: 189 HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +T+ + K + WL P L N +M+ +LG+GIA+ P Y Sbjct: 187 HNCLTY-NFFGKSL----WLFEKQHEQYSVPVSGTLSANESTVLMEAALLGAGIAMQPYY 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 V + LV ++ D + +Y Y L+A +F+ F + W+ Sbjct: 242 SVSPYLISGQLVELLPDYQPQAMGIYAIYSSRQNMPVILRALLDFLVDWFATSSHWQ 298 >gi|238909680|ref|ZP_04653517.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 303 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|325529857|gb|EGD06698.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 303 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 102/188 (54%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA SG+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + Sbjct: 11 LHVFMSVATSGNFTRAAAALGLTPAAVSLAIGQLESELNVKLFNRSTRGVSLTEAGQRYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 R T Y ++ + EL++ +P G LR+ T + L + L+ L F YP +++++ Sbjct: 71 RQTEAAYRQIVQARDELKDVRGEPGGLLRV-TALPLARTLVIAPILASFHQRYPKVRLEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +N+ +DI+ D D IRL +Q + R + A+P Y+ P SI EL Sbjct: 130 RYENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPELTCALVASPDYVARHGAPTSIAEL 189 Query: 187 DKHNLITF 194 ++H + F Sbjct: 190 ERHACVRF 197 >gi|241205186|ref|YP_002976282.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859076|gb|ACS56743.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 299 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/275 (28%), Positives = 133/275 (48%), Gaps = 6/275 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L F VAR SFT AA +L +SQS++S+ + GLE ++G++L R R ++ T+ G Sbjct: 6 NFNELVAFLTVARERSFTRAAAKLGVSQSALSQTVRGLEEKLGLRLLTRTTRSVSPTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +++ L E +P+G +RI ++L L FL +PDI Sbjct: 66 ERLLERVGPRFEEIQFEIAALSEMRERPAGTIRITAGEHPAISVLAPALARFLPDHPDIN 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I+D DI + D IRL + + + R I M AP Y ++ P Sbjct: 126 VEVIVDYGLTDIVAERYDAGIRLGEHLAKDMIAVRIGPEICMAVVGAPSYFEHHPRPDIP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 Q+L HN I +P + W D R+ V + +++ VL G G+A Sbjct: 186 QDLTAHNCINM--RLPTHGTIYPWEFEKDGRELRVRVEGQTVFNNIAMRIGAVLDGLGLA 243 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 +P+ V+ ++ L+RI+ED P + YP Sbjct: 244 YMPEDQVQSYIEDGRLIRILEDWCQPFPGYHLYYP 278 >gi|16119619|ref|NP_396325.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15162187|gb|AAK90766.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 301 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA GS + AA L LS+S +S +++ LE +G L +R R +++TE G Sbjct: 4 DGIASFVAVAEEGSISGAARTLRLSKSVVSERLAELERSLGATLLHRTTRRVSVTEDGVA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +L E G +RIA + G+ L L FL PDI++ Sbjct: 64 FLERAKRILREVSEAAADLAERRGTLGGPIRIAAPVTFGRMHLGPALYPFLTANPDIEMS 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD++ +DI+ D D +R + S L+ +L A+ YL P + E Sbjct: 124 LELDDRRVDIASDVYDGVVR-HGAVDDSRLMVWRLAPSRRVLVASEAYLAVNGTPATTTE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + + + + + D+ +LA I RI +VN+ + + G GIALLP Sbjct: 183 LAAHKGLFYTN---RGVGDWRFLAPGGIEIVRARIG-FRVNNGDMLRDAAIAGLGIALLP 238 Query: 246 DYIVKDNPNL----VRIMEDVITPSFT-VYFCYPEALKNTGKLKAF 286 +I P++ +RI++ + P V+ +PE + + KL+A Sbjct: 239 LFIA--GPDIRDGKLRIVDVGVRPDAEFVFLAHPEGRRPSAKLRAL 282 >gi|317053436|ref|YP_004119203.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316953175|gb|ADU72647.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 305 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/304 (25%), Positives = 149/304 (49%), Gaps = 14/304 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F VA GSF AA + +S ++SR ++ LE +G +LF R +R L LTE G Sbjct: 6 DFEGLAMFAKVAEEGSFAAAARVMGVSVPTVSRAVARLEERLGGRLFNRTSRQLALTEFG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + SE+Y + E + E + +V+P G++R+A + G + + E + +P++ Sbjct: 66 QSMVTKASEMYRQAEEMESEAHDLAVQPRGQVRLAVPMSFGLRWVAPLMPELIRQFPELS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ + D A+R+ + SSL+ R+L + + A+P YL P Sbjct: 126 VDLHLSDASVDLIAEGFDAALRIAS-LPDSSLVARRLCAVTQYLVASPAYLAQHGMPQHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 +EL ++ + F+ + + P G L+V + +++ + G G Sbjct: 185 RELSARQCFSYAYRARSQVWRFSHSSGLQEDIVPNGP-----LRVTNSDALLPPLLAGLG 239 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 IA LP++I + + LV ++++ +YF P + K+KA +F L Sbjct: 240 IAELPEFIAAEYLKDGRLVHLLDEWSMTQGGLYFVTPTSRSRPLKVKALSDFFAKHLSQP 299 Query: 296 DWKF 299 +W++ Sbjct: 300 EWRW 303 >gi|290473336|ref|YP_003466202.1| transcriptional regulator, LysR family [Xenorhabdus bovienii SS-2004] gi|289172635|emb|CBJ79404.1| Transcriptional regulator, LysR family [Xenorhabdus bovienii SS-2004] Length = 296 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/312 (26%), Positives = 145/312 (46%), Gaps = 35/312 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ ++++ F V GSFT AAE+L +S++ S + LE + I L R++RG+ LT Sbjct: 2 MNNQLNRIQTFIAVVDCGSFTRAAERLLISKAMTSIHVKRLEESLNIPLLIRNSRGVALT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G L+ SE++ ++++ + E + SG L I +TI+ G L + EF ++P Sbjct: 62 EAGQFLYNEFSEIFINIQSSLDNVAEQYLSLSGTLHITSTIEFGDRFLLPLIGEFCKIHP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + + D+ D D AIRL ++ SSL RK+ ++ A+P + Sbjct: 122 QLNVSYDAGSALNDLISDRLDLAIRL-GVLRDSSLKSRKIADFKIYMVASPDW------- 173 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---------PRISC-----LQVN 226 L+K+ L T DL +D +W+A + P I N Sbjct: 174 -----LEKNKLETVNDL-----KDVDWIANSNLQTPTHWELSHSTLPSIDIRAKARFNAN 223 Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 S SI + G G+ +LP+++++ + NLVR+ + P V YP + K Sbjct: 224 SSTSIKTMAIAGFGVTVLPEWMIETELQSGNLVRLFPEYSLPKQPVTIVYPNGHQIQRKC 283 Query: 284 KAFRNFIFLKAR 295 + F +++ K + Sbjct: 284 RVFIDYLIDKLK 295 >gi|219871762|ref|YP_002476137.1| LysR family transcriptional regulator [Haemophilus parasuis SH0165] gi|219691966|gb|ACL33189.1| LysR family transcriptional regulator [Haemophilus parasuis SH0165] Length = 296 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 32/282 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF VA +GSFT AE+L +S+ ISR ++ +E + +LF R R + LT+ G Sbjct: 7 IKVFMTVAETGSFTATAERLEISKPMISRYVALMEEWLNARLFQRSTRKVALTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++ +T+E+ ++ Q EL+ G LR+ ++ G L + FL L+P Sbjct: 67 LFCQRIANLTAEMEQEMMAQQGELR-------GALRVTSSQTFGAYHLVQMVNRFLQLHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQL+L+++ +D+ + D AIR+ + I RKL H A P YL P Sbjct: 120 KLNIQLLLNDQTMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPEYLTKFGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235 ++L +H+ ++ ++ K W T GE + S N +++ Sbjct: 179 TQPEDLYQHHYLSHHNINRKA-----WKCTQ----GEQEVLLDLNSRFTTNDTQTLLNSV 229 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + G GI++LP Y+++ L ++ D P+F++Y YP Sbjct: 230 LDGYGISMLPKYMLEPELQQGKLQAVLTDWQLPTFSIYAMYP 271 >gi|56414861|ref|YP_151936.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363789|ref|YP_002143426.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129118|gb|AAV78624.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095266|emb|CAR60819.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 303 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|77457466|ref|YP_346971.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381469|gb|ABA72982.1| putative LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 323 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 9/273 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F V+ +GSFT AA+QL S+ +S++IS LE + L R R L+LT G+ Sbjct: 26 DDLAAFAVLIEAGSFTLAAQQLGCSKGQLSKRISQLEARFSVVLLQRTTRRLSLTAAGAA 85 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E + L +G +R+ + LG+ G L +F YP++QI+ Sbjct: 86 LLPQAQALVVQVERARQALARLKDDMAGPVRMTVPVSLGETFFDGLLLDFSQKYPEVQIE 145 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+N D+S D D AIR + L+ + L+ A+P YL+ EPL+ Q Sbjct: 146 LELNNSYRDLSRDSFDLAIRT-EVANDERLVAKPLLAWQEMTCASPEYLERFGEPLTPQA 204 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 L +H + L WL + R+S +++ ++++ L G+GIA L Sbjct: 205 LAEHRCL----LNSHYSGREEWLYHQQHELLRVRVSGPFASNHYNLLKKAALAGAGIARL 260 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P Y+++ + L ++ D T +Y +P Sbjct: 261 PSYLLQAELADGRLRWLLRDFQTRRMPMYLVHP 293 >gi|221215841|ref|ZP_03588799.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221164306|gb|EED96794.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 304 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 13/281 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA +G FT AAE+L+L+ S++S+ ++ LE +G+ LF R R L LT+ G + Sbjct: 15 FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRSLVLTDAGRAFYETC 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + +L + L +P G +RIA G+ + L F YPD++ L+ + Sbjct: 75 TRILAELAEAEAVLAAQKREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDKH 189 + +D++ + D A+R+ P + R+L+ + AAP YL+ P +I +L +H Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRLLGRERLIFCAAPAYLEKNGIPQTIDDLQEH 194 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245 I +G P ++ A D + + PRI + L+ ++ G G+A L Sbjct: 195 ACIVYGR--PDGVQSLWSYAAADGRVEQCVVRPRIVAGDAEAQLAFVRA---GLGVAQLA 249 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 ++V+D+ LV I+++ T + +P A + T K+ Sbjct: 250 TWLVRDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKI 290 >gi|26986800|ref|NP_742225.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24981395|gb|AAN65689.1|AE016195_10 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 295 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 140/292 (47%), Gaps = 14/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L+ + S+++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + ++ P GK+R+ T +G + YP + Sbjct: 62 GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + LI RKL + YA+ YL Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQAYLDRAPPLRH 179 Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++L +H+ I + D L + + N V P + + S ++ G G Sbjct: 180 REDLARHSWIGYVDDLLFSQELLFLNSFCRV------PNV-VFRSTSVIAQQAAARAGLG 232 Query: 241 IALLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 IA+LP+Y+ + +P LVR++ + I S+ + C L + +L+ +++ Sbjct: 233 IAVLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282 >gi|120537045|ref|YP_957102.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326880|gb|ABM21187.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8] Length = 307 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 21/291 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +GSF+ A +L+++ S IS++I LE ++G++L +R RG LT G Sbjct: 15 MRMFVRVVDAGSFSRVANELNVTTSMISKEIGRLEEDLGVRLLHRSTRGQQLTSIGEGYL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E+ +++ +Q P GKLRI + LG L ++ YPD+++ + Sbjct: 75 KRCRELLVQVDDADAYVQHMQENPRGKLRINAPMALGITDLSQLFSAYMKQYPDVELDIQ 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D R + S+ + + LV+ A+ YL++ +++L Sbjct: 135 LGDESLDLIEHGFDLGFRASSQMLDSNYVGKPLVSFTYKVCASASYLESHPPIREVEDLA 194 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 HN + G+ P G L+VNS L + Q G GI Sbjct: 195 AHNCFVYSYFKSGNFWPLAQ-------------GITVAGSLKVNSTLFMKQVIEDGLGIG 241 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ ++ LV ++ +V P T+Y YP L KL + F+ Sbjct: 242 FLPSFVAREGIEQGKLVEVLPEVGRPDLTLYALYPNRLFTPPKLLSCIEFL 292 >gi|331645474|ref|ZP_08346578.1| transcriptional regulator, LysR family [Escherichia coli M605] gi|330910099|gb|EGH38609.1| putative LysR-like transcriptional regulator [Escherichia coli AA86] gi|331045636|gb|EGI17762.1| transcriptional regulator, LysR family [Escherichia coli M605] Length = 329 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G L+ V Sbjct: 36 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 95 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 96 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155 Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + I S LI KLVT+ A+P YLK P + Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323 >gi|222083041|ref|YP_002542406.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727720|gb|ACM30809.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 297 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 14/293 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + LR F VA +G T AA +L +S+S +SR++S LE E+G +L R RG +LTE Sbjct: 1 MDIEDLRTFVEVADAGGVTSAALRLGVSKSMVSRRLSRLEAELGAQLLARSTRGASLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLL 118 G+ + V + +I++ ++ P SG+LRIA + G L + L Sbjct: 61 GATFRDYAARV-----SAEIDVARDTILPAGELSGRLRIAAPLSFGPTHFASVLADMALR 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P +QIQ ++ +D+ + DCAIR+ +Q S+L+ R++ ++ A+P Y+K Sbjct: 116 HPQLQIQTSYSDRFVDLIGEGFDCAIRVGT-LQDSNLMARRVGPLYGKYVASPAYIKAHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + +EL H + G + M D + + T+ RP G + + + Sbjct: 175 SPETPEELVTHQALMQGMETWQVM-DGDKILTI-RPQGRFKADNGAALVVAAAAGLGIAA 232 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 L DY+ D+ LV +M++ P +Y P + K++ + Sbjct: 233 LPDGLTRDYL--DSGTLVTVMKNHPPPPAGIYVVRPPGQHPSRKVRVLTEMLI 283 >gi|162148452|ref|YP_001602913.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787029|emb|CAP56614.1| putative transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 294 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 17/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +RVF V SFT AA L L +S+++ + LE +G++L R R ++ T G+ Sbjct: 4 FDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTLDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 HR + LE + +P G LR+ L ++ + L +F+ YPDI++ Sbjct: 64 AYHRRCLALIADLEDAEAAF--GGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ +D+ + DC +R+ +Q S ++ R++ + AAP YL P + Sbjct: 122 TLSEGDRLVDLIREGIDCVLRVGD-LQDSDMVARRVAMLEEVTCAAPSYLARFGMPGDVD 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 LD H ++ F G L+P + L T+ +S + VN S++ LG Sbjct: 181 ALDGHRMVGFRSSATGTLLPLEFMVGDSLRTIT------LLSPVAVNGAESLVAAARLGL 234 Query: 240 GIALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +P Y +V+D LV ++ D V YP + +++ F ++I Sbjct: 235 GLVQVPRYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWI 288 >gi|119468712|ref|ZP_01611764.1| putative transcriptional regulator with periplasmic binding domain (LysR family, YafC, YeaT) [Alteromonadales bacterium TW-7] gi|119447768|gb|EAW29034.1| putative transcriptional regulator with periplasmic binding domain (LysR family, YafC, YeaT) [Alteromonadales bacterium TW-7] Length = 304 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 134/265 (50%), Gaps = 6/265 (2%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 V GSF AAE ++ +S IS+QIS LE E+G++L R R +LT G+++ + E+ Sbjct: 5 VVEQGSFAKAAELRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEMIKKAGEL 64 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 L T + ++P G L+I ++ +G+ LQ L +F +P ++++L LD++ + Sbjct: 65 RELLGETVRMAENYHLEPRGVLKITSSTLIGRRYLQPVLNDFQKRFPQVEVELRLDDRLV 124 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 DI + D A R+ +P + SSLI RK+ + AAP ++ P +++EL + Sbjct: 125 DIVSEGFDLAFRIGEP-KDSSLIARKIARNRLLIVAAPEFISTYGMPSTMEELADLPAAS 183 Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD-- 251 + + E ++ + P + S + N +++ + G+ + P +I+ D Sbjct: 184 YASNSMRV-ETVDYYNSSGEPCEQKIKSVYRANDAEALLMKAISGTAYFVAPAFIIGDEI 242 Query: 252 -NPNLVRIMEDVITPSFT-VYFCYP 274 L+ I+ DV ++ +Y YP Sbjct: 243 TEGKLIPILTDVKLMDYSAMYAVYP 267 >gi|56698313|ref|YP_168686.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56680050|gb|AAV96716.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3] Length = 294 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 12/285 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ +R F A +GS + AA +L L+Q ++SRQ++ LE ++G+ LF R R L LT+ Sbjct: 7 LDWNHIRAFLKTAETGSLSAAARRLDLTQPTLSRQVAALEQDLGVMLFERIGRTLVLTDA 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L T + + + + G++RI + + +L L+ P + Sbjct: 67 GADLLEHTRAMGAAADRVALAASGQAQSIEGRVRITASDVMSAYVLPEALRRIRAQAPRL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I++I N D+ AD AIR +P Q LI R + H YAA YL P++ Sbjct: 127 EIEVIAANDIRDLMRREADIAIRHVRPEQ-PDLIARLVREATAHFYAASGYLDRRGRPVT 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 +L H+ I FGD+ E L P+G P L S + Y G Sbjct: 186 KDDLATHDFIAFGDVT----EMLGHLT----PLGLPLTRANFRLGSQSGVVAWDYVRQGF 237 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA + D + P + R++ + F V+ L + +++ Sbjct: 238 GIAPMDDGVAAATPGVERVLPQMEPLLFPVWLTAHRELHTSRRIR 282 >gi|300024296|ref|YP_003756907.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526117|gb|ADJ24586.1| transcriptional regulator, LysR family [Hyphomicrobium denitrificans ATCC 51888] Length = 333 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 141/288 (48%), Gaps = 15/288 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +LRVF V SFT AAE L + +S++S I LE VG +L R R + T G Sbjct: 26 RLRVFVRVVDCKSFTKAAETLAIPRSTVSIAIKELEKLVGARLLSRTTRSVIPTHDGVAF 85 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + S + E + + + + G+L++ +G+ ++ + EF+ YP+I +++ Sbjct: 86 YEQCSRLVDDYEEVEGLFRTAHAELRGRLKVNVPGRIGRMIIAPAVPEFVSKYPNIALEI 145 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ ++ DC +R+ + S+LI R++ + + A+P YL P+ +L Sbjct: 146 GITDRTVDLQLEGIDCVVRVGD-LADSNLIARRIGDLDIINCASPDYLDRNGVPVRPSDL 204 Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 KH I + G P D L +++ P P I+ V++ ++ C+ G G+ Sbjct: 205 RKHRTIAYMPPSGGKPEPWQYVDAKGLQSLNVP---PSIA---VDNAEMLIACCLAGLGL 258 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P Y V+++ LV ++ +P ++ YP +G+L+AF Sbjct: 259 IQVPSYDVREHLRRGELVEVLPKYCSPPMPIHIVYPHRRHLSGRLQAF 306 >gi|241764125|ref|ZP_04762161.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241366531|gb|EER61024.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 309 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 24/265 (9%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V R GSFT AA L +S ++S I GLE +G++L R R ++ TE G +L+ Sbjct: 13 AFVHVVREGSFTRAAALLGVSPGALSHAIKGLEARLGVRLLTRTTRKISTTEMGERLYAS 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S + +++ + E KP+G +RI ++L L + L YPDI +++ +D Sbjct: 73 VSPRFEEIDAEVAAVAEMRDKPAGTIRITAAEHAANSVLWPKLSQVLHDYPDIHVEITVD 132 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 DI D +RL + + R + M +P Y +P + +L +H Sbjct: 133 YALSDIVSQRFDAGVRLGDQVAKDMIAVRVSPDLRMAVVGSPGYFTKYPKPATPHDLAQH 192 Query: 190 NLI-----TFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGS 239 N I T G L+P K ++ N+ R++ V NS SI++ + G Sbjct: 193 NCINLRLPTHGSLLPWDFDKHGKEINF-----------RVAGQWVFNSTTSIVRAALAGY 241 Query: 240 GIALLPDYIVKDN---PNLVRIMED 261 G+A +P+ +V ++ LVR+++D Sbjct: 242 GLAFVPEDMVLEDIAARRLVRVLDD 266 >gi|170736993|ref|YP_001778253.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819181|gb|ACA93763.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 331 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 11/296 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF AA++L + +SS+SR + LE + +LF R R ++LT +G + Sbjct: 28 TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 87 Query: 70 TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 L +++E S PSG LR+ +T G+ ++ L++F YPDI + L+L Sbjct: 88 CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 147 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ D S D D A R + ++ S+++ R+L+ + M A+P Y P + +L + Sbjct: 148 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 206 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H I + E W +D + +++ N +++ + G GIA LP Y Sbjct: 207 HRCINLCTASGRVTE---WEFRIDGVTQQRQLTAHHTFNDIDLVVRAALDGLGIAQLPAY 263 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 V D + LV + Y CY +++ F +++ +ARD + Sbjct: 264 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 319 >gi|78062042|ref|YP_371950.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969927|gb|ABB11306.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 316 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F V GSF AA +L +SQ ISR+++ LE ++ +L R R ++LTE G Sbjct: 6 SMRSFVQVVNDGSFIRAATRLGISQMMISRRVNWLEEQLERRLLVRRTRSVSLTEFGKTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + S++ KL+ + + + PSG LR+A ++ L L L+++ YP++ Sbjct: 66 YTRVSDILAKLDEVEHAVSVPTQTPSGTLRVAVSVGLSLRHLSSCLRDYCDSYPEVLPVP 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +D+ D D I + +SL+ R + + + A A+P YL+ EP EL Sbjct: 126 VLVDRPVDLVADGYDAGIVDLSSLSCTSLVARAVFSAPLIAVASPGYLQRRGEPTHPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H + P+ + L + D G I+C + N+ +MQ + G GIAL Sbjct: 186 AEHAYLAISG--PQRGKPELQLDSAD---GTVTITCNPAVVANNIDFLMQMVLSGMGIAL 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + +V+ + L R+++D P+ T YP K++ F Sbjct: 241 IQPALVQRELEQGTLKRVLQDHWAPAPTFGIVYPSRRHLPAKVRTF 286 >gi|148253444|ref|YP_001238029.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405617|gb|ABQ34123.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 308 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 138/293 (47%), Gaps = 16/293 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA SFT AA +L ++ +IS+ + LE ++G++LF R R + LTE G +L Sbjct: 8 ELTAFVAVAERLSFTKAARELGMALPTISQTVRSLEEDLGVRLFNRTTRSVALTEAGERL 67 Query: 67 HRVTSEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +EV LE L+ ++ KP G LR+ G L ++ F YPDI+ Sbjct: 68 ---LAEVLPVLEGVGQALESINLFREKPIGTLRLTVVRPFGLRQLAPLIRSFSAEYPDIR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ LD+ ++DI D IR+ + I R L M A+P+YL EPLS Sbjct: 125 LEIALDDANVDIVKHRFDAGIRVGSGVGRDMKIVRMLDDFAMLTVASPNYLSRHPEPLSP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +HN + + P W L+ + + P L VN +++ + G GIA Sbjct: 185 GDLRRHNCLKYRS--PGENSIHQWTLSDGRQKMDVPVEGSLVVNDLDLLVEAALNGVGIA 242 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 LP IV+ + R++ + P + ++ +P + L+ F FI Sbjct: 243 YLPRPIVETHLAAGRLVH--VLPGWEYMMPGIFLFHPSRRQVPVPLQVFVKFI 293 >gi|282600345|ref|ZP_06257559.1| transcriptional regulator, LysR family [Providencia rustigianii DSM 4541] gi|282565602|gb|EFB71137.1| transcriptional regulator, LysR family [Providencia rustigianii DSM 4541] Length = 303 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 8/251 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L +F V SG+FT A+E LH+++S++S+ IS LE +G+ LF R R LT+ Sbjct: 4 LDLNCLPIFIAVVESGNFTAASELLHVTRSAVSKSISRLENSLGVALFQRTTRQQVLTDD 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ S+ + L+ L+ GK+ I LG + L E + LYP + Sbjct: 64 GMVLYEYASKALNSLQEASNFLESGKRHVEGKVCITAPRLLGNLYVIPLLIELMNLYPKL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+ +L+++ +D+ + A+R+ K S+ LI ++ M A+P YL P Sbjct: 124 EIETLLNDRKMDLQQEGIHIAVRVGKLPDSNQLIAHEIGHHKMILCASPGYLTKNGIPQK 183 Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 I EL+ H LI + G ++P + D + + P + + +Q +IM + G Sbjct: 184 ISELNSHQLIAYTQVGQVLPWQLYDDHQQEYLYLPTSKFMMDDMQ-----AIMSAVLQGG 238 Query: 240 GIALLPDYIVK 250 GIA LP ++V+ Sbjct: 239 GIAYLPQWLVQ 249 >gi|239994569|ref|ZP_04715093.1| transcriptional regulatory protein [Alteromonas macleodii ATCC 27126] Length = 294 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD +R+F +AR+G AA+ L + +++ R++ LE + KLF +G LT G Sbjct: 2 NWDDMRLFLGLARNGRVAIAAKGLKVDPTTLIRRVKKLEDSLNCKLFELTKKGYVLTTHG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S+L + H Q EL + +G +R++ + G L L +F YP I Sbjct: 62 SELVTYIEKAEHYFLEAQNELGDERSHLAGTIRVSVSEGFGSWFLAPLLPDFKKQYPGIS 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L+ + ++++ AD AI L KP L+ +KL +++ Y + + EP ++ Sbjct: 122 IELVATSGFLNLNKREADMAILLEKP-SKGLLVTQKLTDYNLYLYTHQSLISD-NEPRTL 179 Query: 184 QELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 QEL NL+++ DL+ F ++S L+ S + Q V G+G+ Sbjct: 180 QELTAFNLVSYVPDLVYAPQLKF------IEETALSQLSALRSTSINAQYQMLVNGAGVG 233 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + P LVR++E+ I T + + + + + F ++ Sbjct: 234 ILPKFMAETQPGLVRLIENEIHIKRTFWLATHKETHSQARFQVFTKWL 281 >gi|312964668|ref|ZP_07778919.1| putative transcriptional regulator [Escherichia coli 2362-75] gi|331681683|ref|ZP_08382316.1| LysR-family transcriptional regulator [Escherichia coli H299] gi|312290689|gb|EFR18567.1| putative transcriptional regulator [Escherichia coli 2362-75] gi|323191416|gb|EFZ76678.1| putative transcriptional regulator [Escherichia coli RN587/1] gi|331080885|gb|EGI52050.1| LysR-family transcriptional regulator [Escherichia coli H299] Length = 297 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S I LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|281177479|dbj|BAI53809.1| putative transcriptional regulator [Escherichia coli SE15] Length = 308 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + I S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|262279544|ref|ZP_06057329.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259895|gb|EEY78628.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 300 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 9/214 (4%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L VF +VA S + AA L + S ISR I+ LE ++GI+ F R R L Sbjct: 1 MSRQFDHLADVEVFLIVAEKLSISAAAIYLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++++ G L L++FLL Sbjct: 61 SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + +SSL+ R L + A+P+YLK Sbjct: 121 QYPDIQIEISISNRNVDLIAEGFDLAIR-QGHLPNSSLVARPLELAPLQLVASPNYLKRV 179 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCMEDFN 206 P S++EL+ H I F G + P +D + Sbjct: 180 GIPQSLEELNHHQCIAFELPSSGKITPWFFKDVD 213 >gi|330890287|gb|EGH22948.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. mori str. 301020] gi|330989456|gb|EGH87559.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. lachrymans str. M301315] Length = 298 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 136/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S + + I LE +G++LF+R R + +T +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LET ++EL + P G+LRI ++ L L+ + EF+ YPDI++ + Sbjct: 69 CRRILSELETAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIIEFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ R++ + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSRRMGGFQLKIVGAPDYFSRRGTPQHPADLSRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P + +W + R G + QV N+ ++ G GIA LPD Sbjct: 186 ACLLHK--FPSSGKFEHW--PLRREAGADDLDLPQVMVCNTTEILVDVARAGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ LV I+ D + + +P + + +L+ F +F+ Sbjct: 242 FMISSAIRTGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFM 288 >gi|206564589|ref|YP_002235352.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198040629|emb|CAR56615.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 334 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 138/296 (46%), Gaps = 11/296 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF AA++L + +SS+SR + LE + +LF R R ++LT +G + Sbjct: 28 TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 87 Query: 70 TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 L +++E S PSG LRI +T G+ ++ L++F YPDI + L+L Sbjct: 88 CRPGIEHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVVAPLLRDFHARYPDITLDLLL 147 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ D S D D A R + ++ S+++ R+L+ + M A+P Y P + +L + Sbjct: 148 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 206 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H I + E W +D + +++ N +++ + G GIA LP Y Sbjct: 207 HRCINLCTASGRVTE---WEFRIDGLTQQRQLAAHHTFNDIDLVVRAALDGLGIAQLPAY 263 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 V D + LV + Y CY +++ F +++ +ARD + Sbjct: 264 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 319 >gi|146343447|ref|YP_001208495.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196253|emb|CAL80280.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 303 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA SGSF+ A L L+ S++SR + +E +G +L R R LTLT +G Sbjct: 12 LEVFCAVADSGSFSAAGRGLGLTPSAVSRTLDRIEIRLGARLLLRSTRALTLTAEGQAYL 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L + + + S P G++R++ + G+ + L EF+ YP+I + + Sbjct: 72 AAARRILADLNEAEQAIADQSA-PRGRIRVSAALSHGRICIVPLLGEFVRRYPNILVDIN 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ AD AIR P+ S+L R+L A+P YL C PL+ ++L Sbjct: 131 LSDGLVDIAAGQADVAIR-GGPLADSALTARRLSDNGRSIVASPDYLARCGVPLTPEDLH 189 Query: 188 KHNLITFG 195 HN + +G Sbjct: 190 HHNCLNYG 197 >gi|254491199|ref|ZP_05104380.1| LysR substrate binding domain, putative [Methylophaga thiooxidans DMS010] gi|224463712|gb|EEF79980.1| LysR substrate binding domain, putative [Methylophaga thiooxydans DMS010] Length = 306 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 141/287 (49%), Gaps = 16/287 (5%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS AA +L++S ++ S+ I+ LE +G +L R R L LT+ G ++ + +L Sbjct: 17 GSIAAAARRLNISSAAASQNIARLEKGLGARLLTRTTRSLALTDSGEVYYQRVKGLIQEL 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + + S + SGKL +A + +++L + F YP I ++++ ++ D Sbjct: 77 ELAEQAVSASQGEVSGKLTVACSAAFARHVLAPLIPGFQAAYPQISLEVVATDRRPDHIG 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 + D +IR+R+ ++ ++ RK+ T+ +H A+P YLK P + Q L +HN + F Sbjct: 137 EGIDVSIRIRQQLE-EGIVARKVATVPLHFCASPSYLKQVGCPDTPQALLQHNCLMF--R 193 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIALLPDYIVKD---NP 253 +P + F W D EP + ++ + ++ + + G GIA L ++ + Sbjct: 194 VPVEGKIFRWAFIRDGVRYEPEVKATMISDDIDLLARLAISGGGIARLASFVAMPFLADG 253 Query: 254 NLVRIMEDVITPSFTV-------YFCYPEALKNTGKLKAFRNFIFLK 293 +L+++ E +P V YFC + T K+ AF F +LK Sbjct: 254 SLIQLFEKEQSPDVEVEAEPLEYYFCLLDRYAKTPKVTAF--FEYLK 298 >gi|110635646|ref|YP_675854.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286630|gb|ABG64689.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1] Length = 293 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 23/296 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD +RVF VAR+G AA +L L+ +++SR+++ LE G KLF R G LT Sbjct: 1 MDWDDVRVFLAVARAGQILGAARRLGLNHATVSRRVAALEDAAGAKLFRRLTTGSELTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + + E+ SG +RI G L L +P + Sbjct: 61 GERLLAAAERMEADMIAARAEIAGEGEDISGSVRIGAPDGFGVAFLAPRLWRLTERHPRL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + + +S AD AI + +P + L+ KLV + +A+ Y P + Sbjct: 121 SIQLVPVPRSLSLSRREADIAITVDRPTE-GRLVASKLVDYSLGLFASKAYAAGHGLPQN 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL H L+ + +P D + T+D I E + V+S + ++ G+G Sbjct: 180 AAELAHHRLVGY---VP----DLVFSPTLDYAAEISEHWDAAFAVSSAMGQVEAVRAGAG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 I +L +I R MED++ F + + + E+++ T +++A FI Sbjct: 233 IGILHCFI-------ARGMEDLVAVPFAQPIRRSYWLVFHESMRMTRQIQAAAAFI 281 >gi|86748062|ref|YP_484558.1| LysR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571090|gb|ABD05647.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris HaA2] Length = 332 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 7/290 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +DW+ + F VAR S AA +L + +++SR+I LE + LF R G +LT Sbjct: 27 IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRIRELERSLNSTLFKRSKSGFSLT 86 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + + + + + G +RIA +G L + +F +YP Sbjct: 87 EIGMRLLQYAEGMESQANAIVEAIGTDTADAGGAVRIAAMEGIGSFYLTPCIVDFNKIYP 146 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQI+LI D + +D+S AD + +P L +K+ + YA+ Y + EP Sbjct: 147 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYASNRYFEGRSEP 205 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +EL+ H I F + E+ WL+ V RP P + + S ++ G G Sbjct: 206 RTQKELEDHAFIDFIEDHIYSKEN-RWLSDVLRP---PH-TIFRSTSLVAQSIAVSAGQG 260 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA+LP Y+ L +M ++ T + ++ E L + ++KA F+ Sbjct: 261 IAMLPTYVASGRSELRPVMPELFT-TRDIWLSVHEDLLHIARIKAVITFL 309 >gi|298489047|ref|ZP_07007070.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156545|gb|EFH97642.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 304 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 138/289 (47%), Gaps = 7/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F +VA+ +F+ AEQ+ L+ SSIS +S LE ++G +LF R R + LT++G Sbjct: 9 DDLRIFNLVAQLKNFSRVAEQIDLAPSSISMAVSRLEAQLGARLFQRTTRKMVLTDEGLT 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + ++ +G+LR+ + + L+ L EF +PDIQ+ Sbjct: 69 LLSRSERLLEDFDEVTSLFRQPGNHLTGRLRVDLPLGMAAGLVMQRLPEFHARHPDIQLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ D DC +R+ SL+ R L + + A+P Y++ P + + Sbjct: 129 IFSTDRRVDVIADGFDCVVRVGA-ATDVSLVCRPLGALPLVNVASPAYIEAYGMPATPAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ + F ++ TV R + P + VN+ + C G GI+ L Sbjct: 188 LALHYLVNYAPNPSDSAAKFEYMDGTVARTVTVPH--KVTVNNSPACGAACRAGFGISQL 245 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P V + LV+++ D + + + YP +++ F +++ Sbjct: 246 PLLGVASYLASGLLVKVLPDYLPATMPINLLYPHRRNVPQRVRLFGDWL 294 >gi|262372497|ref|ZP_06065776.1| LysR family transcriptional regulator [Acinetobacter junii SH205] gi|262312522|gb|EEY93607.1| LysR family transcriptional regulator [Acinetobacter junii SH205] Length = 307 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 143/295 (48%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE ++G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEYGGFSAAERATEIPKSKLSRRVYNLEEQLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S +P G ++++ +D+ QN + L FL YP Sbjct: 61 DIGMDVYRHAQVMMNAAQAAHDVVNHLSSEPRGVIKVSVPVDIAQNQMAKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 ++++Q+++ N+ +D+ + D A+R+R + +L+ R+ I +A+ YL Sbjct: 121 EVRVQMMVSNRRVDVINEGIDLALRVRSKLDDDPNLVLREFEAIEQRLFASQAYLNEFGH 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238 + +EL KH +I+ + ++ L+ + + +++ + ++ L + Q Sbjct: 181 LNTPEELSKHRIISMSE---DHLDQQFLLSGPNNQQQKIKVNPVIMASNLLMLAQLASQN 237 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD I +D + LV+++ + P + YP G L A R FI Sbjct: 238 CGIALLPDSIAQDFVKSGQLVKVLPEWTAPHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|323497753|ref|ZP_08102768.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323317229|gb|EGA70225.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 293 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 141/277 (50%), Gaps = 26/277 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF V++ GSFT A ++ SQSSIS++++ LE ++G L +R +R + LT QG + Sbjct: 5 DCIRVFVRVSQLGSFTQVANEMDTSQSSISKKMAWLEKQIGFTLLHRTSRQIMLTTQGQE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +++ + L+ + SG L++ L + +F+ L+P + ++ Sbjct: 65 YLSYSQRLLDEMDAMESRLKLELNEVSGTLKLTCPSAFATQRLAKPVSKFMALHPSLSVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++K I++ D AIR + SS RK++ + +A+ Y+ +P+S E Sbjct: 125 VSVEDKVINLHQADVDIAIRASH-LDDSSFKARKIMLHQICYFASSQYVATMGKPISPVE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L H + + + P + WL +D GEP ++VNS S ++Q LG+ Sbjct: 184 LSDHRCLVYSLMTPSNV----WL--ID---GEP----VRVNSVFSSDSPDMLVQMARLGT 230 Query: 240 GIALLPDYIVKD---NPNLVRI---MEDVITPSFTVY 270 GIA +P ++V + LV + ME + P + VY Sbjct: 231 GIAAMPRWMVDNELKEETLVELFPDMEKTMLPMYAVY 267 >gi|224825200|ref|ZP_03698306.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224602871|gb|EEG09048.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 303 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR VA +G F+ AA +L ++ SS++R + LE +G L R R + LT+ G+ Sbjct: 7 LRTLVEVAETGGFSKAARRLGVATSSVTRLMDALEQSLGTVLLTRTTRRVLLTDAGANYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + LE + + +P G LR+A + + L G L F+ YP +++ L+ Sbjct: 67 EQVSRLLADLEEADSSIADGREEPMGSLRVAVPVTYSRLCLGGALSGFMTTYPRVKLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D++++ D A+R+ P + LI +KL A P YL+ P + EL Sbjct: 127 VSDAYQDLAVERLDLAVRIGLPNRDEHLIVKKLAENRRFLVAGPDYLERHGTPRAPIELA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246 H + F + W D E + + + L ++ VLG GIALLP+ Sbjct: 187 SHACLRFAYRPGRQ----RWTFRSDARSEEVEVDGPFITNSLDMLHEAVLGGHGIALLPE 242 Query: 247 YIVKDNPNLVRIMEDVITPSFT-------VYFCYPEALKNTGKLKAFRNFI 290 ++V+ + R++ S T VY Y +++ K+ AF ++ Sbjct: 243 WVVQQDIRAGRVLRLCDAWSVTPQQGDAYVYAAYLPNRRHSRKVHAFIQYL 293 >gi|300781857|ref|YP_003739092.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299060123|emb|CAX53313.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 289 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 10/264 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V ++ SF AAE L + S++SR+I LE +G++L +R R + LTE G + + Sbjct: 4 FVEVVKAQSFRGAAEALGMPNSTLSRKIKELEKFIGLRLLHRTTRKIELTEAGQIYYERS 63 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + +L +P G LR++ D +L +K F YP I L Sbjct: 64 RRIIDEARLAHEQLGSLLAQPQGMLRVSLPADFAVVILAPLIKAFSDFYPGISFDFDLTP 123 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +++D+ + D A+R+ + S LI RKL ++ YA+P YL P + EL H Sbjct: 124 RNVDLVSEPYDLAVRM-GSLPDSGLIARKLGSLSRSLYASPDYLVQNGTPGNPDELTAHE 182 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249 I P +W + RIS Q+NS + ++ +G+GIA+LPD IV Sbjct: 183 CIGMRQDKPG-----HWHLHREESRISLRISGRFQMNSIGMMRRFASMGAGIAILPDKIV 237 Query: 250 KD---NPNLVRIMEDVITPSFTVY 270 + + L R++ D + T+Y Sbjct: 238 GEDVADNKLTRVLPDWRAEAVTIY 261 >gi|218675220|ref|ZP_03524889.1| probable transcriptional regulator protein, LysR family [Rhizobium etli GR56] Length = 293 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 140/291 (48%), Gaps = 13/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFVRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + +G +R+ G + L + + + +P + Sbjct: 61 GGVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGKLIERHPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L +P Q L+ KL + YA+ YL + P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRDYLAHHGRPGD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239 ++ L H I + +ED + A+++ GE S ++++ + + G+ Sbjct: 180 VEALKAHPRIGY-------VEDLLFTASLNFS-GEVMRSWDAGFEISTAIGQTEAVRSGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +L DYI + P L RI+ +V + + Y E ++ ++++ +F+ Sbjct: 232 GIGILHDYIARQYPELQRILPEV-SIRRAYWTTYHETARDLVRVRSVVDFL 281 >gi|215483208|ref|YP_002325415.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|213988332|gb|ACJ58631.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] Length = 300 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QN L L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QLI+ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237 S EL H++++ + + ++ L D + + ++S + N Y+ + Q Sbjct: 181 IKSPDELSDHHILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD +D + LV+I+ D + YP G L A R FI Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|117618645|ref|YP_855289.1| regulatory protein, LysR:LysR, substrate-binding [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560052|gb|ABK37000.1| regulatory protein, LysR:LysR, substrate-binding [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 289 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 9/284 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F +AR G+ AA L + Q+++ R+I+ LE +G KLF R + L+ Sbjct: 2 INWDDARFFLALARQGTLRGAAGVLGVDQATVGRRITALEQNLGSKLFIRTPKLYDLSPL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + S + ++ + + G++RIATT L Q + L +P I Sbjct: 62 GEAMLADASAMEQAIKAIERKASADDQSLCGEVRIATTDTLAQAFVLPALTLLRERHPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L DI+ AD AIR P + L+ ++L TI M YA+ YL P S Sbjct: 122 RLSLQTAVSVSDIAYREADLAIRGLCP-DNDELVIKRLTTIEMGLYASRDYLARHGTPKS 180 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H L+ F +L+ + +W + P+ EP + LQ N+ L ++ G GI Sbjct: 181 GHGLSQHALLLFARELVSR-----HWHSLCGEPLHEPNV-VLQCNAQLLLLAAARQGLGI 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 ALL ++ P+LVR++ + P +P+ L+ +++A Sbjct: 235 ALLSTFLADKEPDLVRVLPSLCDPVDIWLVLHPD-LQKASRVRA 277 >gi|294139133|ref|YP_003555111.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293325602|dbj|BAJ00333.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 315 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 33/285 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA+ L+L +S++SR++ LE E+ +KLF+R +R +TLT GS Sbjct: 5 EDISLFHRIVETGSLVEAADLLNLPKSTVSRRLQALEDELKVKLFHRQSRAMTLTASGSH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120 + T + LE T +EL ++ + G LRI +D+ + EF+ Sbjct: 65 FYDKTLSILGDLEQTLMELTDTQAEIGGHLRILMFPVPELLDIANGIF-----EFMEHNS 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++LI+ + D+ + D A + + ++ R++++ +H A+P YL P Sbjct: 120 ELTVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREVISEELHFVASPGYLAKAGTP 179 Query: 181 LSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC- 235 + ++L+KHN I F G + FN + P G ++ N L+ ++ C Sbjct: 180 VLPEDLEKHNSILFRYPNGRI-------FNEV-----PFGNDMKIAVKGNLCLNSIELCL 227 Query: 236 ---VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + G GIA LP + + + L + EDV Y YP Sbjct: 228 EASITGRGIAFLPTKVTREYVERGELTILFEDVEPYIGKCYLVYP 272 >gi|226363874|ref|YP_002781656.1| LysR family transcriptional regulator [Rhodococcus opacus B4] gi|226242363|dbj|BAH52711.1| putative LysR family transcriptional regulator [Rhodococcus opacus B4] Length = 302 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 21/297 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F D +R ++R+G AA++L + Q+++SR+I+ LE + G +LF R A G LTE Sbjct: 5 FTADNMRYLLELSRTGRLADAAKRLDVDQTTVSRRITRLEKDTGTRLFDRGASGWQLTEA 64 Query: 63 GSKL----HRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEF 115 G +L V S + L+ T SS P +G +RI T G +L L Sbjct: 65 GRRLVPYAESVESTLLAALDVT------SSAAPGALTGTVRILTPDGFGAFVLVPGLAAV 118 Query: 116 LLLYPDIQIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 +PD+ +L+ D+ D+ D A+ L +P S++ RKL + YA+ HYL Sbjct: 119 RTEHPDLFTELVTSTTHDVLTGRDF-DIAVTLERP-SPRSVVVRKLAEYDLRLYASRHYL 176 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +I +L H LI + D D L +DR + + R + +Q N+ Q Sbjct: 177 DTHDAIATIDDLRTHTLIWYVD----AFLDVEPLRILDRLLPDFR-AQIQTNNIAGHYQA 231 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GIA LP YI + +LV I+ D T + P L ++KA ++ Sbjct: 232 VKHGVGIAPLPSYIGALDEDLVPILTDDFIAHRTYWLVVPRELTRLARVKAITEALY 288 >gi|161615833|ref|YP_001589798.1| hypothetical protein SPAB_03624 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365197|gb|ABX68965.1| hypothetical protein SPAB_03624 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 303 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRATLISRFTIL----PVAAPQWL--ARNPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V + L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|320197247|gb|EFW71863.1| Putative LysR-like transcriptional regulator [Escherichia coli WV_060327] Length = 329 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G L+ V Sbjct: 36 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 95 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 96 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLTRYPKTKIELIMDD 155 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323 >gi|254477319|ref|ZP_05090705.1| transcriptional regulator, LysR family [Ruegeria sp. R11] gi|214031562|gb|EEB72397.1| transcriptional regulator, LysR family [Ruegeria sp. R11] Length = 292 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 6/294 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VA+ G+ + AAE L + +++ R + LET +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVAKMGTVSGAAEVLGVHHATVIRHVDALETRLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L+ SG+L + T++ LL L EF +PD+ Sbjct: 63 QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSAMSALLVPALTEFQNQHPDLI 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+ + ++ + A AIR P + + + +T + YA+ Y+ + Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGAPPEQPDNVVQPFMTQQHNLYASQGYIDKYGPLKGL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++ H + D+ + WL P C+ + +S+ + G+GI Sbjct: 182 DDMANHRFVANDDVESRAPYS-KWL-RAHAPESALSFRCV---AGVSMQDALIAGAGIGF 236 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 L + P+LVR+M+ + + ++ L T K++ F F+ +A+ W Sbjct: 237 LTQWEAARYPHLVRMMDPLPEWTSDLWLVTHVDLHRTPKVQTFLKFLKAEAKAW 290 >gi|167550237|ref|ZP_02343994.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324785|gb|EDZ12624.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 314 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLTDSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQRSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V + L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|70729830|ref|YP_259569.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344129|gb|AAY91735.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 315 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 17/300 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + V+ V +G+ T AA + +S + + + LE +G++L R R LT+ G Sbjct: 4 FQAMSVYVKVVEAGNMTAAARECGMSTTMVGNHLRALEQRLGVRLLNRTTRRQRLTDFGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ V + ++ ++ +P+G LRI + G L L EF P +++ Sbjct: 64 DYYQRCLAVLGLVADSERLAEQVQGEPTGTLRITAPLTFGTERLAPALDEFRQRCPQVKV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L N+ D++ D A+RL + ++SLI R+L + AAP YL+ C P + Sbjct: 124 ELTLANQRFDLTDGTFDVAVRLGN-LDNASLIARRLQDYTLTICAAPEYLERCGTPQVPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGE---PRISCLQVNSYLSIMQYCV 236 +L +HN + F P E W AT P G+ P L N+ + + Sbjct: 183 DLQRHNCLAFA--YPAGDE---WSATATLWPLRGPEGDVQVPVSGSLLANTSSGLHRAAR 237 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G G+ ++PD +V+++ LV +++D P T++ Y + KL++F +F K Sbjct: 238 GGLGLVMMPDALVEEDLQQGRLVPVLQDYQLPFRTMHLLYAQDRYRLPKLRSFVDFALEK 297 >gi|149927837|ref|ZP_01916088.1| transcriptional regulator, LysR family protein [Limnobacter sp. MED105] gi|149823459|gb|EDM82690.1| transcriptional regulator, LysR family protein [Limnobacter sp. MED105] Length = 300 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 132/273 (48%), Gaps = 9/273 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA + ++ + ISR++ LE +G+KL R R L LT +GS Sbjct: 6 QITTFAAVATKGSLSAAAREEGVAPAVISRRLDALEERLGVKLLLRTTRTLNLTYEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + +K SG LR++ G+ + + +F+ +P++ + L Sbjct: 66 LEDCQRILNDLSNAEASVSLGGIKASGHLRVSAPGGFGRQHVAPLVHDFVREHPEVTVSL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+R+ + SSL+ KL A P YL+ P EL Sbjct: 126 DLSDRVVDLLNENIDCAVRI-GVLPDSSLVGVKLADNQRLVVATPTYLQRHGSPQHPLEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 KHN + +L+ WL T++ R+S L N SI+ + + +G+A Sbjct: 185 AKHNCL---NLVSSGAPS-GWLFTINGEATPIRVSGNLACNDGSSILDWVLNDAGLAWRS 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 + V+ + +LV +++D I P +Y +P+ Sbjct: 241 RWEVQQYLRSGSLVTVLDDFIAPPNAIYAVFPQ 273 >gi|114326958|ref|YP_744115.1| LysR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315132|gb|ABI61192.1| transcriptional regulators, LysR family [Granulibacter bethesdensis CGDNIH1] Length = 468 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 142/295 (48%), Gaps = 16/295 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + VF VA SGSF AAE+L LS+++IS+ I+ LE +G LF R +R L+LTE G Sbjct: 166 DLEGWAVFARVADSGSFAGAAEELGLSRATISKIIARLEGRIGAALFNRTSRRLSLTEVG 225 Query: 64 -SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + L R S + + + + + SS P G +RI+ + G ++ L + L +P I Sbjct: 226 RASLERALS-MLEQAQGLEENARSSSAAPRGLVRISAPVSFGLMHVRPLLPQLLAEHPGI 284 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L LD+ +D+ D AIR+ + + S L R++ + M AAP L+ R P Sbjct: 285 DIDLRLDDAVVDLVAGGYDMAIRIAQ-MPDSGLRVRRIARMQMKIVAAPSLLERVR-PEH 342 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLG 238 ++LD + +G +T + P G L+ N+ +++ G Sbjct: 343 PRDLDMALCLGYGHGTMAGRWRLRRESTGEEASLLPAGR-----LRTNNGEIMLEAARSG 397 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G AL PD+++ D+ LV ++ D P + P +L ++ A +F+ Sbjct: 398 QGFALAPDFLIWDDLTAGTLVPVLTDWSLPLLELNIVLPPSLLRPARIAAVASFL 452 >gi|224824023|ref|ZP_03697131.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224603442|gb|EEG09617.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 305 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 137/284 (48%), Gaps = 8/284 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ + GS T A +L+L+ ++SR+++ LE +G++L R R ++LT +G Sbjct: 4 ELAFFCLLVKQGSLTATARELNLTPPAVSRRLAQLEERLGVRLLNRTTRRISLTSEGEVY 63 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +++ + + S P G LR+ + G++ + + F YPD+++QL Sbjct: 64 FQNAMRILSEIDEMEQLVSSSRAAPKGHLRVNAPLGFGRSYIGPAISAFAKNYPDVEVQL 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ + + D D +IR I S LI +K+ A+P+YL+ P + +L Sbjct: 124 LLTDRPVSLPDDAIDVSIRF-GDIPDSRLIAKKIAGNRRLLVASPNYLRAIGIPSNPHDL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 KH I L NW + + +++ L N + + + G GI + Sbjct: 183 TKHQCIV---LRQNEYAYGNWRLSRGKLTETIKVNGKLSTNDGEVALNWALEGHGILMRA 239 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ V + LV+++ D TPS +Y YPE L + K+ F Sbjct: 240 EWDVAKYLRSGRLVQVLADYDTPSADIYAVYPERLNLSAKVAYF 283 >gi|221211013|ref|ZP_03583992.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221168374|gb|EEE00842.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 320 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 8/291 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + + Sbjct: 7 MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + +SV P G+LR+ + G + + ++ +PD+ +++ Sbjct: 67 ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YLK P ++ +L Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN + N A R L VN + + G+GIALL Sbjct: 187 AQHNYLRRDSNASTLDAMLNDAAAASRVALN---GNLIVNHLEGLRAAVLAGAGIALLGT 243 Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 244 EVVGDDIEAGRLVPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|188533695|ref|YP_001907492.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis Et1/99] gi|188028737|emb|CAO96599.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis Et1/99] Length = 319 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 15/250 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF +AR +F+ A +L +S S++S I LE +G++LF R R + LTE G++L Sbjct: 8 ELSVFISLARQLNFSATARELGVSTSALSHSIRKLEARMGMQLFTRTTRSVALTEAGAQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + ++LE E+ S +PSG +RI+ + L+Q L +F YPDI ++ Sbjct: 68 FRRAAPAINELEQAIHEVNSSRDRPSGTIRISAAEAGARPLIQNMLPDFFKTYPDIHVEF 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++D + +DI D + IRL + + + I TI + A A+P YL P S + Sbjct: 128 VVDTRYVDIVADGFNAGIRLLEDVPLDMVAIPFGPETIRIAAVASPDYLAKHGCPASPDD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239 L H I F L ++W R + + VN +++ + + G Sbjct: 188 LRNHQCIRFRFLSGAL---YHWDLEY-----RGRSTNVNVNGPMTLGNTNLMVDAALAGI 239 Query: 240 GIALLPDYIV 249 GIA +PDY V Sbjct: 240 GIAWVPDYHV 249 >gi|170694602|ref|ZP_02885754.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170140484|gb|EDT08660.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 314 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 26/317 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L VF V SGS T AAE+L + S +SR ++ LE ++ L R R L LT Sbjct: 1 MKTSTDELLVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + +E + + +PSG+LR+ + + ++ F LYP Sbjct: 61 EEGEGFLQRARAILDAMEEAEESVARKRRRPSGRLRVDAASPFMLHCIAPHMTAFSALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L + +D+ D AIR+ +Q S+L R L + + A+P YL EP Sbjct: 121 EIRLELTSSERIVDLLEQKVDIAIRI-GALQDSTLHARALGSSKLRVVASPAYLAEHGEP 179 Query: 181 LSIQELDKHNLITFG-----------DLIPKCMEDFNWLATVDRPIGEPRI----SCLQV 225 S+ L +H LI F + + + + R G+P + Sbjct: 180 KSVDALREHRLIGFTAPEHLNRWPLRERGKRAGKGTSASGRAGRAGGKPEPLKIEPSITA 239 Query: 226 NSYLSIMQYCVLGSGIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYFCYPEALK 278 +S ++ Q + G GIA L D++ ++D P L ++ D P VY+ ++ Sbjct: 240 SSGETLRQLALSGWGIACLADFMTAADIRDGRLVPILGHVLLDERQPVSAVYY---QSAS 296 Query: 279 NTGKLKAFRNFIFLKAR 295 G+++ F +FI ++ R Sbjct: 297 LAGRVQCFLDFIAVRVR 313 >gi|190890434|ref|YP_001976976.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190695713|gb|ACE89798.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|327190567|gb|EGE57659.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 293 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 139/291 (47%), Gaps = 13/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + +G +R+ G + L + + +P++ Sbjct: 61 GGIFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L +P Q L+ KL + YA+ YL P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRDYLAAHGRPGD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239 ++ L H I + +ED + A+++ GE S ++++ + + G+ Sbjct: 180 VEALKAHPRIGY-------VEDLLFTASLNFS-GEVMRSWDAGFEISTAIGQTEAVRSGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +L DYI + P L RI+ + I+ + Y E ++ ++++ +F+ Sbjct: 232 GIGILHDYIARQYPELQRILPE-ISIRRAYWTTYHETARDLVRVRSVVDFL 281 >gi|167587391|ref|ZP_02379779.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 313 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFMRVVDAGSFTAAAQQMNSTTAYTSRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ + + YPD+ + L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHCFTSLGQHYTVPAVSRYRERYPDVHVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+P YL+ P Q+L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPRYLERHGVPQQPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 +H + G + P D +W T+ P G+ ++ +VN ++ G GI Sbjct: 186 ARHTCL--GMVAPGFHYD-DW--TLSGPNGDEHVALSSPPFRVNVAEALAVAVREGMGIG 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y N + VR+M + + +Y YP K++ + +F+ Sbjct: 241 VLPIYSAIAGLRNGHFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291 >gi|123440729|ref|YP_001004721.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087690|emb|CAL10473.1| putative lysr-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 297 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 16/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L VF VAR SFT AA L +SQS+IS I GLE +GI+L R RG TE G Sbjct: 5 DFNHLAVFITVAREKSFTRAAAHLGVSQSAISHSIRGLEERLGIRLLTRTTRGAVPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + Y +ET L E KP G +RI++ +L L + L YPDI Sbjct: 65 ERLLANLTPYYDGIETELATLGELREKPGGTIRISSHDHPATTILWPKLSKLLKEYPDIT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D IDI D +R+ I + R M +P Y +P + Sbjct: 125 LEINVDYGLIDIVAGRFDAGVRIGDQIAKDMIAMRISPDFRMIVVGSPDYFSRHPKPETP 184 Query: 184 QELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L HN L T G L E V P + N+ ++ + G Sbjct: 185 HDLTSHNCANLRLSTHGGLFAWEFEKGGQEVKVQVP------GQMIFNTSPQLLTAALEG 238 Query: 239 SGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYF 271 G+A P+ +V+ L+ ++E+ + P + +Y+ Sbjct: 239 YGLAYAPEDVVQRYIKEGRLMPVLEEWSPLLPGYHLYY 276 >gi|324010235|gb|EGB79454.1| LysR substrate binding domain protein [Escherichia coli MS 57-2] Length = 308 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|319780904|ref|YP_004140380.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166792|gb|ADV10330.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 302 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 4/246 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSF+ AA L ++ S++S+ I+ LE +G +L R R L LT +G+ Sbjct: 11 EIEVFVRVVEEGSFSSAARALRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGTAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + P G++RI + + G + L L FL YP+I + L Sbjct: 71 YESGLRIL-ADMAAAEQEAAAGASPRGRVRINSYVPFGVHRLVPLLPRFLERYPEISVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L + +D+ + AD AIR P+ S L+ RKL + AAP YL+ PL+ +L Sbjct: 130 VLTDSVVDLMAERADVAIRA-GPLSESRLVARKLGQSPVVVVAAPSYLETHGIPLTPADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 DKHN + FG + + ++ + +L R I P V+ ++ + G+GIA L Sbjct: 189 DKHNRMGFGFV--RHLDGWPFLDAEGRVIMIPITGNTLVSDGEAMRLMALAGAGIARLAR 246 Query: 247 YIVKDN 252 + V ++ Sbjct: 247 WHVAED 252 >gi|124265350|ref|YP_001019354.1| LysR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258125|gb|ABM93119.1| transcriptional regulator, LysR family [Methylibium petroleiphilum PM1] Length = 304 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 123/278 (44%), Gaps = 18/278 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS T AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QIESFAAVATKGSLTAAAGAEGVAPAVIGRRIDALEERLGVKLLVRTTRRITLTHEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + L + + VK SG LR+ G+ + + F + D+ + L Sbjct: 66 LEDAQRLLTDLANAEASVSAGGVKASGHLRLTAPAGFGRRHVAPLVPRFAEAHRDVSVSL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +DI + DCA+R+ + SSL+ +L AAP YL+ P EL Sbjct: 126 NLSDRVVDIVNEGYDCAVRVGD-LPDSSLVSLRLADNRRLCVAAPAYLQRAGTPQHPGEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H +T L + W +VD RP G S QV + +C+ G G Sbjct: 185 GRHQCLT---LSSNASQARGWAFSVDGELTHLRPSGRYDCSDGQV-----LHDWCLAGHG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 IA + V+ + LV +++D P +Y +P+ Sbjct: 237 IAWRSTWEVEQEVASGALVTLLDDFAAPPNGIYAVFPQ 274 >gi|200386534|ref|ZP_03213146.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603632|gb|EDZ02177.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 303 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|188583416|ref|YP_001926861.1| LysR family transcriptional regulator [Methylobacterium populi BJ001] gi|179346914|gb|ACB82326.1| transcriptional regulator, LysR family [Methylobacterium populi BJ001] Length = 304 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD L+VF VAR A +L L+ ++++R++ LE +G LF+R G LTE Sbjct: 1 MNWDHLQVFLAVARHSQMLEAGRRLGLNHATVARRLDALEAALGTPLFHRRPNGSALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L V + ++ ++ +PSG +RI LG L L F Y ++ Sbjct: 61 GEQLVPVAERIEAEVLAVAARMRAQEAEPSGTVRIGAPDGLGTLFLARELGLFASRYANL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L+ + +S AD AI L +P LI KL + YAA YL P S Sbjct: 121 VIELVPLPRSFSLSRREADLAIGLDRPAH-GRLILSKLSDYSLGLYAAKAYLDRAGMPES 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240 + +L H + ++D+ + + +D + R++ + ++ ++ G+G Sbjct: 180 VADLGSHAAVI-------GVDDYAYASALDYTAFLQDRVARVFRCVGAVAQLEAVRAGAG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +L D+ P+LVRI+ + +P+ + ++ A R+F+ Sbjct: 233 LGILHDFAAAALPDLVRILPETAFRRSYWLMSHPDD-HGSRRIAACRDFL 281 >gi|161526131|ref|YP_001581143.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349155|ref|YP_001944783.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343560|gb|ABX16646.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189333177|dbj|BAG42247.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 320 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 8/291 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + + Sbjct: 7 MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + +SV P G+LR+ + G + + ++ +PD+ +++ Sbjct: 67 ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YLK P ++ +L Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN + N A R L VN + + G+GIALL Sbjct: 187 AQHNYLRRDSNASTLDAMLNDAAAASRVALN---GNLIVNHLEGLRAAVLAGAGIALLGT 243 Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 244 EVVGDDIEAGRLVPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|330939125|gb|EGH42552.1| LysR family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 303 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 139/306 (45%), Gaps = 13/306 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+FD + + +F V RSGSF AA QL + ++ISR++ LE ++ +L R AR L LT Sbjct: 1 MAFDLNDVALFVQVVRSGSFAQAARQLCMPSNTISRRVQQLEMQLDTRLLQRSARKLVLT 60 Query: 61 EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + G + R V +E + +L +PSG +RIA D + FL Y Sbjct: 61 QAGEVFYGRCVGAVDGVMEAAE-QLVSGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178 P +Q++ +L + D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 P S+Q L H ++ W L D + E I+ N+ ++ + + Sbjct: 179 TPDSLQSLHSHYCVSAAHRGGVSA----WRLLGPDAKMHEVHIASRFNANTAQALRKATL 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GIALLP +++ + LV ++ S ++ YP + AF + K Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294 Query: 294 ARDWKF 299 RD F Sbjct: 295 LRDKAF 300 >gi|315499519|ref|YP_004088322.1| transcriptional regulator, lysr family [Asticcacaulis excentricus CB 48] gi|315417531|gb|ADU14171.1| transcriptional regulator, LysR family [Asticcacaulis excentricus CB 48] Length = 299 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 152/301 (50%), Gaps = 20/301 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 D D L F++V +GSF AA++L +++S +SR+++ LE ++ +L R ARG T+ Sbjct: 4 GVDLDDLHAFFLVVETGSFARAADRLGVAKSIVSRRVAHLEDQLKARLLTRTARGTQTTD 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + E +LE Q + ++ ++ +G +R++ + G + L L EF + P Sbjct: 64 VGALYYAKAREAMAQLEAAQEAVNDAMLEVAGPIRLSAPLSFGVSHLAPVLTEFAVRNPR 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I++ + D++ +D+ D IR+ + + S+LI R++ I+ A+P YL P Sbjct: 124 IELDVSFDDRRVDVLGGGFDVVIRIGE-LTDSTLIARRIGHINGMIVASPDYLSQKGMPQ 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVL 237 + +L + + + + ++ P + W V+ GE R+ + V ++ ++ V Sbjct: 183 TPDDLGQLDCLLYTNVAPGDV----WRFVVN---GEERMVRIPVRLRSDNGDMLLSAAVA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFC--YPEALKNTGKLKAFRNFIFL 292 G G+A LP +I + + +V I+ + T TV C P T +++A +F+ L Sbjct: 236 GLGVARLPAFISSEAIASGQVVPILPEYNT---TVPLCAVMPPGRSRTARVRALVDFLAL 292 Query: 293 K 293 + Sbjct: 293 R 293 >gi|194364470|ref|YP_002027080.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347274|gb|ACF50397.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 303 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 9/300 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D + +R+ VA + SFT AA QL LSQS +SR I LE +G+KL R+ R + LT Sbjct: 9 SMDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAIGRLEATLGVKLLQRNTRNVALTT 68 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + S + L+ + +L + PSG L+I+ G+ +L L L +P Sbjct: 69 DGRQFVEQVSPLLAGLDDAERQLADRPCTPSGTLKISAPSMFGRRVLVPLLGPLLQQHPQ 128 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q++ +L ++ +D+ + D A+R I ++ R L + A+P YL C P Sbjct: 129 LQVEAVLSDRLVDLVEEGFDAALRT-GTIADQRMVARPLKPLRWVTVASPEYLDRCGTPD 187 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + L H + +L + D+ +L R + P L ++ + G G Sbjct: 188 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREVTPPARMVFDCGDPL--VEAAISGIG 245 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 I + D+ V D + L R+++ S + YP + +++ KL+ + + A DW Sbjct: 246 IVQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALL--AGDW 303 >gi|150395549|ref|YP_001326016.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027064|gb|ABR59181.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 293 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 138/290 (47%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +RVF VAR+G A+++L ++ +++SR+++ LE + +L R G LT + Sbjct: 1 MNWDDVRVFLAVARTGQILAASKRLGVNHATLSRRVTALEATLKTRLLVRRPSGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q ++ +G +RI G + L L + YP++ Sbjct: 61 GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLMARYPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++QL+ + +S AD AI + +P Q L+ KL + YA+ YL P + Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQ-GRLVSSKLTDYTLGLYASADYLAGHGTPRT 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L KH I + DLI N+ A V R + +++S + +GI Sbjct: 180 VDDLKKHRRIGYVEDLI--FTPSLNFSAEVMRSWD----ASFEISSATGQTEAVRSSAGI 233 Query: 242 ALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L +YI + P L+R++ E I ++ + Y E+ ++ +++ +F+ Sbjct: 234 GILHNYIARQYPELIRLLPETAIRRAY--WTTYHESARDLVRVRTAVSFL 281 >gi|311280536|ref|YP_003942767.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1] gi|308749731|gb|ADO49483.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1] Length = 298 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 132/277 (47%), Gaps = 13/277 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + ++L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTRAAARLGVSQSALSHAMKALEARLNLRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + +LE + + + SG +R++ + LL LK FL +P I Sbjct: 65 ERVIACLAPRLDELERELENIVQLNGVISGNIRLSAGEHAARRLLWPKLKPFLQAWPQIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L++DN +DI D +RL + + + R + M A +P Y P + Sbjct: 125 IELVVDNGFVDIVDGRFDAGVRLGESVDKDMVAVRIGPDMRMAAVGSPGYFAARGIPQTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC---LQVNSYLSIMQYCVLGS 239 EL +H I +P ++W D G+P R+ L N + V G Sbjct: 185 HELQQHRCINM--RLPTAGGLYHWEFEKD---GKPLRVGVEGQLTFNLLAERVDAIVSGF 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 GI +P+ +V+D LVR++E P+F Y+ Y Sbjct: 240 GIGFVPEDMVQDELRAGALVRVLES-WCPTFPGYYLY 275 >gi|227329235|ref|ZP_03833259.1| Regulatory protein, LysR family (Azotobacter vinelandii DJ) [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 298 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 142/285 (49%), Gaps = 9/285 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + ++ LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTAEGSLFLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL ++ P G+LR+ ++ L +L+ L EF+ YP+I++ L Sbjct: 69 SRRILAEIEAAELELSQTRAVPRGRLRV--SLPLVSSLVLPVLSEFMREYPEIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R P+ S L R+L AAP YL P +L +H Sbjct: 127 DRMVDVIEEGFDAVVRTGDPVD-SRLTARRLGAFRSLLVAAPDYLTRRGTPQIPVDLMQH 185 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + P + W L P + + N+ + + + + G GIA LPD+ Sbjct: 186 TCLHYR--FPSSGKLEPWALRLPPGEPELPLPTSMVCNNIETRLCFALQGLGIAYLPDFS 243 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ + +L I+ D + S Y +P + + K++A +F+ Sbjct: 244 IREPLASGHLQPILTDYVERSGVFYVLWPASKHPSPKVRALVDFL 288 >gi|222086699|ref|YP_002545233.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724147|gb|ACM27303.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 305 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 139/298 (46%), Gaps = 23/298 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A E+L ++Q+++S QI LE +G LF R R + LTE Sbjct: 14 FPLNALRVFEAAARLGSFTRAGEELGMTQTAVSYQIKLLEGNIGELLFLRKPRQIALTEA 73 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSG----KLRIATTIDLGQNLLQGNLKEFLLL 118 G +L SE + LQE+ SG L I +T L ++ F L Sbjct: 74 GERLAPKVSEAFAL-------LQEAMASVSGDAETTLLIDSTPTFASQWLARHIGSFQLQ 126 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P++ ++L K ID S D AD AIR + L L+ I+ +P + Sbjct: 127 HPNVAVRLATSGKLIDFSRDPADIAIRSGRGTW-PGLRAHLLMKINFTPMLSPELAASIG 185 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCV 236 +L K +I GD E + A V P G PR S L S+ + + Sbjct: 186 GVHEPADLLKLRIIDAGD---PWWEQWFQAAEVPDPGLQGRPR-SRLGAQSFEA--SAAI 239 Query: 237 LGSGIALL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+A+L P++ D L++ + + + S + YPE+ ++T +++AFRN+I Sbjct: 240 AGQGVAILTPEFYADDLAGGRLIQPFDILCSDSSDYWIAYPESRRHTPRIRAFRNWIL 297 >gi|86356379|ref|YP_468271.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280481|gb|ABC89544.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 293 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 139/291 (47%), Gaps = 13/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + +G +R+ G + L + + +P++ Sbjct: 61 GEVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L +P Q L+ KL + YA+ YL P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRDYLAAHGRPGD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239 ++ L H I + +ED + A+++ GE S ++++ + + G+ Sbjct: 180 VEALKAHPRIGY-------VEDLLFTASLNFS-GEVMRSWDAGFEISTAIGQTEAVRSGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +L DYI + P L RI+ + I+ + Y E ++ ++++ +F+ Sbjct: 232 GIGILHDYIARQYPELQRILPE-ISIRRAYWTTYHETARDLVRVRSVVDFL 281 >gi|4928923|gb|AAD33772.1|AF139107_2 hypothetical transcriptional activator [Pseudomonas aeruginosa] Length = 306 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 12/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +F V SFT AA+ L + +S++SR+I+ LE +G++L R R L LTE G Sbjct: 4 DDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ H + + + PSG LRI + I+ GQ L L +F+ YP I + Sbjct: 64 YYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQITAE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D + D I + +P + S+L+ R+L++ A+P YL P S+ Sbjct: 124 VELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTSVAG 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + L+ + + W + D + +SC N+ + V G+GIA LP Sbjct: 183 LAGHRAV----LLSTDSQRY-WPLSGDSLPCQRVLSC---NNITFAREAVVAGAGIAALP 234 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I + + LVR++ DV P +Y YP K+KAF +F+ Sbjct: 235 ALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283 >gi|261819683|ref|YP_003257789.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603696|gb|ACX86182.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 298 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/301 (26%), Positives = 144/301 (47%), Gaps = 23/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+ F VV +GS T AAEQL + S ISR + LE ++G L +R R L+L+ Sbjct: 1 MKVTLEELQAFVVVIETGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+GS V H +E + ++ +PSG+LRI + Q+++ + EF YP Sbjct: 61 EEGSMFLEHARGVIHAVEHAEEQVLLRHEQPSGRLRINSGSAFMQHVIVPLVPEFRRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D+ ID+ + D AIR+ ++ S++ R L T +H A+P YL+ P Sbjct: 121 KIVLELNTDDFIIDLLEQHTDIAIRI-GTLKDSTIHARPLGTSKLHIVASPDYLQQHGTP 179 Query: 181 LSIQELDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 +++ L H + F + ++DF + V L ++ + Q Sbjct: 180 KTVESLADHLCLGFTQSESLNHWPLRHGLQDFYTIKPV-----------LSASNGEILRQ 228 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G GI + ++++D+ R++ E+ + S VY Y + ++ F +F Sbjct: 229 LALQGEGIMRMSTFLIRDDLAAGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDF 288 Query: 290 I 290 + Sbjct: 289 M 289 >gi|260769565|ref|ZP_05878498.1| putative transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|260614903|gb|EEX40089.1| putative transcriptional regulator LysR family [Vibrio furnissii CIP 102972] Length = 293 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 9/247 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L + V SGSF+ AAE + + + +SR +S LE ++GI + R R L LTE+G + Sbjct: 6 DDLEILITVVDSGSFSQAAEVMDVQVAKVSRAVSRLELQLGITILNRTTRRLELTEEGKR 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +L + ++ P GKLR+ + L ++EF YPDI ++ Sbjct: 66 FVESVRAGLQQLRQAEEDIVSRGELPKGKLRVDAASPFMLHQLVPLVREFHAAYPDIDLE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ K + S+L R L ++ A+P YL P + QE Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LNDSTLHARPLGKSALYVVASPDYLAQRGFPTTPQE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+++ F P+ + + T EP I+C +S ++ Q + G+GIA L Sbjct: 185 LHQHDIVGF--TAPRTLNIWPLNGT---EFIEPTIAC---SSGETVRQLVIAGNGIACLS 236 Query: 246 DYIVKDN 252 ++VK++ Sbjct: 237 GFMVKED 243 >gi|221202040|ref|ZP_03575076.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221204829|ref|ZP_03577846.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221175686|gb|EEE08116.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221178123|gb|EEE10534.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 304 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 13/281 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA +G FT AAE+L+L+ S++S+ ++ LE +G+ LF R R L LT+ G + Sbjct: 15 FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRSLVLTDAGRAFYETC 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + +L + L +P G +RIA G+ + L F YPD++ L+ + Sbjct: 75 TRILAELAEAEAVLAAQKREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDKH 189 + +D++ + D A+R+ P + R+L+ + AAP YL+ P +I +L +H Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRLLGRERLIFCAAPAYLEKNGIPQTIDDLQEH 194 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245 I +G P + A D + + PRI + L+ ++ G G+A L Sbjct: 195 ACIVYGR--PDGAQSLWSYAAADGQVEQCVVRPRIVAGDAEAQLAFVRA---GLGVAQLA 249 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 ++V+D+ LV I+++ T + +P A + T K+ Sbjct: 250 TWLVRDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKI 290 >gi|323525151|ref|YP_004227304.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382153|gb|ADX54244.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 305 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SFT +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L P G +R+ T+ L + LL L +F YP+I + Sbjct: 64 LFYERCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPEIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ P + SSL+ R++ + A+P YL+ P ++ Sbjct: 124 RLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPTTLD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L +H + + + + + F + V+ I + + S L VN ++ LG GI Sbjct: 183 QLSEHRAVNY--VSARTGKTFPFEYEVNGEIAKVAMKSVLAVNDGSVYIRAGALGHGIIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + L I+ D +P + Y + +L+AF ++ Sbjct: 241 PSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWV 290 >gi|299770757|ref|YP_003732783.1| putative HTH-type transcriptional regulator YcjZ [Acinetobacter sp. DR1] gi|298700845|gb|ADI91410.1| putative HTH-type transcriptional regulator YcjZ [Acinetobacter sp. DR1] Length = 295 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 34/291 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L+ F V ++ +FT AA + ++QS++S+ I+ LE ++GIKL R R LTLT Sbjct: 1 MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQE-SSVK--PSGKLRIATTIDLGQNLLQGNLKEFLL 117 E GS+L + V +E + +++ SS+K PSG +RI+ + L LK+ + Sbjct: 61 EAGSRLIEL---VGQNIENIDLGIEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVK 117 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAP 171 YPDI ++L +N+ IDI+ + D +R+ +L+++ L+ + + A+P Sbjct: 118 QYPDISLELTSENRRIDIAKEGYDAGVRV------GNLVEKDLIAVPISKEIPFRLIASP 171 Query: 172 HYLKNCREPLSIQELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226 YL+ P SI +L KH L+T L+ +D N P+ L + Sbjct: 172 EYLEKYGTPQSIDDLKKHKGIYIRLLTDNSLMAWEFKDKNKSVFFRGPVQ------LVMT 225 Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFC 272 S ++ + G +A LP ++VK + LV ++E V P F +++ Sbjct: 226 SLDEMLDAVLDGCAVAYLPYFLVKPALEEKKLVSLLEQHAVTLPPFYLFYT 276 >gi|241765568|ref|ZP_04763527.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241364628|gb|EER59671.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 318 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 144/290 (49%), Gaps = 20/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R++ V +G+FT AA+ L L ++++++ + LE + +KL R R +T+T G+ + Sbjct: 7 MRIYVRVVEAGTFTRAADSLSLPKATVTKHVQALEERLRVKLLNRTTRRVTVTADGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L+ + + + P G+LR+ + + L+ NL +F YPDIQ+ L Sbjct: 67 ERTVRLLTDLDDIEASMTNARSNPRGRLRVDVGTGVARLLIIPNLAQFHARYPDIQVDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184 + ++ +D+ D DC IR + + SL+ R++ + A+P YL+ + P+ I+ Sbjct: 127 VSDRVVDLIGDNVDCVIRGGE-LSDQSLVARRIGNLEFITVASPGYLERHGAPQHPIDIE 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +HN + + G P +E ++D G +S + N+YLS + G Sbjct: 186 R--RHNSVIYFSPQSGRHYP--LEFRKGEESIDI-TGPYLVSVNESNAYLSA---ALAGL 237 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+A + + D+ +LV+++ + P VY YP + K++AF Sbjct: 238 GVAQITTFQATPYLDDGSLVQLLPEWSQPLLPVYVVYPPNRHLSAKVRAF 287 >gi|221200148|ref|ZP_03573191.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2M] gi|221206699|ref|ZP_03579711.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2] gi|221173354|gb|EEE05789.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2] gi|221180387|gb|EEE12791.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2M] Length = 322 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AAE L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q+ KP+G LR+ LG+ L+ +L F YPDI + L Sbjct: 67 EHCVKILSEIAEADASFQKG--KPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLG 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + AAP YL EP I +L Sbjct: 125 LSDRPVDPIEEGIDCMIRV-GPLEDSSMVARRIGMLRRVTCAAPDYLARHGEPREIADLA 183 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H + F G +P W+ +D +P+ + + VN + + + G G+ Sbjct: 184 GHYAVNFRATQGGRAVP-------WVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGM 236 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP + K++ F ++I Sbjct: 237 IQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWI 288 >gi|206577674|ref|YP_002237661.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206566732|gb|ACI08508.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 306 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE + +KL +R R L +T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQ Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC +R + I SLI R + + + Y APHY++ P + Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-ITDQSLIARHVGDLQIGVYVAPHYVERLGAPAHPR 182 Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H ++ F + ++ L + I L V+ + ++ + G G+ Sbjct: 183 ELQNTDHRIVGFVSSRSRKIDPL-VLRSESEQIEITGNYVLAVDDGNAYLEAGLAGLGVI 241 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290 LP Y+ + + + P FT ++ +P GKL+ F ++I Sbjct: 242 ALPIYMAAAHQAV-----GALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWI 292 >gi|126737988|ref|ZP_01753718.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] gi|126721381|gb|EBA18085.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] Length = 302 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 14/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M FD L +F VA G+ A E+ LS ++ +++I LE ++G KL R R ++LT Sbjct: 1 MPFDLKSLELFVRVAALGALGRAGEEFRLSPTATTQRIQMLEADLGTKLLNRTTRAVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G V +E + + + +G+LR+ T+ G++ + + EFL YP Sbjct: 61 PDGELFLEHAQRVLDSVEEARAAVSTVKGRVTGELRVTTSASFGRSQIVPYIGEFLDQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ ++L L++ IDI D AIR+ + SS+L+ RKL A+P YL+ P Sbjct: 121 DVTLKLDLNDSIIDIVEQGYDLAIRVGM-LNSSTLLARKLAPNPRLLVASPDYLERFGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +L H I G E NW L I E R+ N ++ + G Sbjct: 180 QQPSDLKSHRCIVLG-------ETRNWALKDEAGNITEVRVGGNFTTNFGEAVTDTTLQG 232 Query: 239 SGIALLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + + D+ L+R++ ++P + V+ P + +++AF +F+ Sbjct: 233 MGIGLKSVWDISDHLKARRLIRVLPSHTVSPEWQVWAVRPASRTTPPRVQAFTSFL 288 >gi|17549690|ref|NP_523030.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431945|emb|CAD18622.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 297 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L F VAR SFT AA QL +S S++S + LET +GI+L R R ++ TE G Sbjct: 5 NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTVRALETRLGIRLLTRTTRSVSPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + +++ + E PSG +RI TT + LL L + L YPD++ Sbjct: 65 ERLLQSIAPRFEEIDAELAAIGELRDTPSGTVRITTTDYAIRTLLWPKLSKVLHDYPDVK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ + D DI + D +RL + + R + M AP YLK P + Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAARIAPDLRMVIVGAPAYLKRHPAPKTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L H I +P + W L R I L N I+ + G G+A Sbjct: 185 QDLTAHRCINL--RLPTRGGVYAWELKKGQREIQVRVDGQLTFNGVYEILDAALSGYGLA 242 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273 +P+ + + + R ++ED P+F Y Y Sbjct: 243 YMPEDLAQPHVAAGRLKWVLEDWF-PTFPGYHVY 275 >gi|187928558|ref|YP_001899045.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725448|gb|ACD26613.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 308 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT+ G Sbjct: 7 EAMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQT 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ Q ++S G+LR+ + + + ++ L L +P+++I+ Sbjct: 67 FYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D + DC +R+ + SSLI R L +H A+P Y+ P ++ E Sbjct: 127 LSSTDRRVDPVREGFDCVLRI-GALTDSSLIARPLGQLHQVNCASPAYIARYGMPRTLDE 185 Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LD+H ++ T G P W TVD R P + V+S S C G G Sbjct: 186 LDRHRIVHYVQTLGTKSP------GWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLG 239 Query: 241 IALLPDY-----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + P Y + D L+ +M D P V YP +++ F N++ Sbjct: 240 MIQAPVYAGLSSAIADG-TLIDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWM 293 >gi|71280356|ref|YP_269246.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71146096|gb|AAZ26569.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 301 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 17/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +A + + + A L LS + S I+ LE +GI+L +R R ++LTE+G Sbjct: 4 EHLKLFLRLAATNNISQAGNDLGLSPAVASAHINKLEQGLGIRLVHRTTRKVSLTEEGET 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EV +ET + + P G+LRI G+ + +K FL LYPDIQ+ Sbjct: 64 FLPHAEEVISSIETARASVGVGQASPKGRLRITAPASFGRMHIVSAMKGFLSLYPDIQVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L + +D+ D AIR ++ S+LI RKL +P YLK EP S Q+ Sbjct: 124 IRLTDNIVDLVEGGFDIAIR-DAELKDSTLIARKLSPDKRIICVSPDYLKKFGEPNSPQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H + L W+ D P G I + ++ ++ CV G GIA Sbjct: 183 LRDHQCVILNGL-------ETWV--FDTPAGHINIKPKGNFRTDNGEAMRDACVDGLGIA 233 Query: 243 LLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + V + LV+I+++ + + ++ YP + K++AF +++ Sbjct: 234 MNATWSVYRHLQSGELVQILKEYPLISNAAIWAVYPSSRLLAPKVRAFIDYL 285 >gi|290508738|ref|ZP_06548109.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289778132|gb|EFD86129.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 306 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE + +KL +R R L +T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQ Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC +R + I SLI R + + + Y APHY++ P + Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-ITDQSLIARHVGDLQIGVYVAPHYVERLGAPAHPR 182 Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H ++ F + ++ L + I L V+ + ++ + G G+ Sbjct: 183 ELQNTDHRIVGFVSSRSRKIDPL-VLRSESEQIEITGNYVLAVDDGNAYLEAGLAGLGVI 241 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290 LP Y+ + + + P FT ++ +P GKL+ F ++I Sbjct: 242 ALPIYMAAAHQAV-----GALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWI 292 >gi|224584690|ref|YP_002638488.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469217|gb|ACN47047.1| possible LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 310 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 13 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 73 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 132 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 187 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 241 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 242 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 297 >gi|152968797|ref|YP_001333906.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262044058|ref|ZP_06017138.1| contact-regulated protein A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005763|ref|ZP_08305375.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|150953646|gb|ABR75676.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259038630|gb|EEW39821.1| contact-regulated protein A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536131|gb|EGF62519.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 301 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 144/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++ +F V SGSF+ AAEQL + S++SR + LE+++G+ L R R L+LT Sbjct: 1 MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + +L E+ P G LR+ + + L +K F YP Sbjct: 61 EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H+ + F + P + W ++ D + E + + NS ++ Q C+ G+ Sbjct: 180 QHPSDLKQHHCLGFTE--PVSLN--TWPVSCCDGQLLEIE-AAVSSNSGETLKQLCLTGN 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L DY+V + V ++ D P F+ + A+ +++AF +F+ Sbjct: 235 GIACLSDYMVDKEIASGEFVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289 >gi|315300274|gb|EFU59510.1| LysR substrate binding domain protein [Escherichia coli MS 16-3] Length = 308 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244 Query: 239 SGIALLPDYIVKDNPNLVR---IMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N + I+ED V P F +Y ++ K++AF +F+ K Sbjct: 245 TGIIQHLDFAIAEHINASKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|288959528|ref|YP_003449869.1| HTH-type transcriptional activator [Azospirillum sp. B510] gi|288911836|dbj|BAI73325.1| HTH-type transcriptional activator [Azospirillum sp. B510] Length = 296 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 131/282 (46%), Gaps = 8/282 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V R GS + AA L L+Q +++R ++ LE VG LF R RGL T+ Sbjct: 8 WDLYRSFLAVVREGSLSAAARALGLTQPTLARHVAALEEAVGGSLFLRSPRGLAPTDAAL 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + G +R+ + +G +L L + +P ++I Sbjct: 68 ALLPQAEALEAAAAGLWRTASGWGAEVRGTVRVTASEVVGARILPAILADLRHRHPALEI 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR-KLVTIHMHAYAAPHYLKNCREPLSI 183 +L+L N D+ AD A+R+ +P Q + +++R ++ + MHA+ YL P Sbjct: 128 ELVLSNAVDDLLQRDADVAVRMVEPDQQALVVRRVGIIALGMHAHR--DYLVRHGSPRHP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L +H+LI F P D + + PR + L+ +S+L+ + G GI + Sbjct: 186 ADLGRHSLIGFDRETP----DIRAMIRRAPAVALPRFA-LRSDSHLAQLAAIEAGFGIGI 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + NP+LVR++ D ++ E L++T + +A Sbjct: 241 CQVPLARRNPDLVRVLADAFDMPMGMWVAMHEDLRSTPRCRA 282 >gi|170740705|ref|YP_001769360.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194979|gb|ACA16926.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 307 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 8/265 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R V R+G+ + AA L + +++ R+I LE ++G +LF+R A G T+ G Sbjct: 9 WDDYRFALAVFRAGTVSAAARLLGVDHATVIRRIDRLERQLGERLFHRRASGYVATQAGQ 68 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V + Q + S+ + +G +RI G L L + +PD+ I Sbjct: 69 AVAATADAVESAIINGQSLVGRSAARLTGTVRIGAPDGFGSTFLAPRLTGLVERHPDLDI 128 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL+ + +S AD AI L P + ++ RKL + YAAP YL+ S + Sbjct: 129 QLVATARLFSLSKREADIAIGLSLP-REGRIVGRKLTDYALKLYAAPSYLRAAPPIESRR 187 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L++H + + + + E ++L V IG + L+ + ++ + G G+A+L Sbjct: 188 DLERHRFVGYIEELLYTPE-LDYLRQVSSGIG----ARLRSANVIAQLHAVAAGIGLAVL 242 Query: 245 PDYIVKDNPNLVRIM--EDVITPSF 267 P ++ P+LV ++ E V+T SF Sbjct: 243 PCFMAAGRPDLVCVLPREVVLTRSF 267 >gi|262194735|ref|YP_003265944.1| LysR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262078082|gb|ACY14051.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM 14365] Length = 296 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 10/291 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF+ AA L + QS++S+ I+ LE E+ +L R R +TE G + ++ Sbjct: 9 AFVRVVELGSFSAAAADLRVEQSTVSKWIAALEDELAARLIDRTTRQRRVTEAGQRFYQR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 E+ E+Q+ +P G+LR++ + G+ + FL YP++++ L + Sbjct: 69 AREIATSYAAAAAEVQDDE-RPRGRLRVSAPVVFGRLFVVPAAVRFLRRYPEVELDLRMS 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D A+R+ P+ SSL R L H A P YL C P ++L H Sbjct: 128 DRYVDLVEGGFDLAVRVGAPLD-SSLRARTLARSRRHLVATPRYLARCGTPERPRQLSVH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + L P F + R R + + L++ + + G+A+L D++V Sbjct: 187 ACLVHSGLAPGSPWVFRRGSRTQRVRVSARFAADNSEALLAMARASL---GVAVLADWLV 243 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 + LV ++ + P+ V + T ++AF + + FL AR Sbjct: 244 ARDLERGRLVSLLPEYELPAAPVQALSAPGRRATPTVRAFADVLADFLAAR 294 >gi|86751602|ref|YP_488098.1| LysR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574630|gb|ABD09187.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris HaA2] Length = 304 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 11/252 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F V SF A +L LS++++S+ ++ LE +G +LF R +R L LT+ G Sbjct: 6 DFEALAIFAKVVELRSFAATAAELALSKATVSKAVTRLEARLGARLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L +++ E + E S P G +R+A + G ++ L +FL YP++ Sbjct: 66 QRLAERAAQLLADGEAAESEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPDFLAAYPEVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D +R+ + SSL+ R+L + + A+ YL P Sbjct: 126 IDLHLSDAMVDLIGEGFDAGVRIAS-LPDSSLVARRLCAMPRYTVASKAYLAQHGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H + L P N A+V RP G L+VN+ +++ + G Sbjct: 185 MHLAAHRCFGYAYLSTPNVWTYTNAEGEQASV-RPSGP-----LRVNNGEAVLPAVIAGL 238 Query: 240 GIALLPDYIVKD 251 GIA LP++IV D Sbjct: 239 GIADLPEFIVGD 250 >gi|26246309|ref|NP_752348.1| LysR family transcriptional regulator [Escherichia coli CFT073] gi|91209363|ref|YP_539349.1| putative LysR-like transcriptional regulator [Escherichia coli UTI89] gi|117622573|ref|YP_851486.1| putative LysR-like transcriptional regulator [Escherichia coli APEC O1] gi|191173547|ref|ZP_03035073.1| transcriptional regulator, LysR family [Escherichia coli F11] gi|218557215|ref|YP_002390128.1| LysR family transcriptional regulator [Escherichia coli S88] gi|237707713|ref|ZP_04538194.1| LysR family transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|306813222|ref|ZP_07447415.1| putative LysR-like transcriptional regulator [Escherichia coli NC101] gi|331656359|ref|ZP_08357321.1| transcriptional regulator, LysR family [Escherichia coli TA206] gi|26106707|gb|AAN78892.1|AE016756_75 Putative LysR-like transcriptional regulator [Escherichia coli CFT073] gi|91070937|gb|ABE05818.1| putative LysR-like transcriptional regulator [Escherichia coli UTI89] gi|115511697|gb|ABI99771.1| putative LysR-like transcriptional regulator [Escherichia coli APEC O1] gi|190906142|gb|EDV65755.1| transcriptional regulator, LysR family [Escherichia coli F11] gi|218363984|emb|CAR01649.1| putative LysR-like transcriptional regulator [Escherichia coli S88] gi|226898923|gb|EEH85182.1| LysR family transcriptional regulator [Escherichia sp. 3_2_53FAA] gi|294492910|gb|ADE91666.1| transcriptional regulator, LysR family [Escherichia coli IHE3034] gi|305853985|gb|EFM54424.1| putative LysR-like transcriptional regulator [Escherichia coli NC101] gi|307628224|gb|ADN72528.1| putative LysR-like transcriptional regulator [Escherichia coli UM146] gi|312944887|gb|ADR25714.1| putative LysR-like transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|323958721|gb|EGB54422.1| LysR substrate binding domain-containing protein [Escherichia coli H263] gi|331054607|gb|EGI26616.1| transcriptional regulator, LysR family [Escherichia coli TA206] Length = 329 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G L+ V Sbjct: 36 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 95 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 96 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323 >gi|110640568|ref|YP_668296.1| lysR family transcriptional regulator [Escherichia coli 536] gi|227884692|ref|ZP_04002497.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|300977337|ref|ZP_07173828.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|300977377|ref|ZP_07173866.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|301045912|ref|ZP_07193098.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|110342160|gb|ABG68397.1| putative lysR-family transcriptional regulator [Escherichia coli 536] gi|222032110|emb|CAP74849.1| LysR-like transcriptional regulator [Escherichia coli LF82] gi|227838293|gb|EEJ48759.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|300302088|gb|EFJ58473.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|300308329|gb|EFJ62849.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|300409862|gb|EFJ93400.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|307552214|gb|ADN44989.1| putative LysR-like transcriptional regulator [Escherichia coli ABU 83972] gi|315287779|gb|EFU47182.1| LysR substrate binding domain protein [Escherichia coli MS 110-3] gi|315295129|gb|EFU54464.1| LysR substrate binding domain protein [Escherichia coli MS 153-1] gi|323953081|gb|EGB48949.1| LysR substrate binding domain-containing protein [Escherichia coli H252] gi|324010887|gb|EGB80106.1| LysR substrate binding domain protein [Escherichia coli MS 60-1] Length = 308 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|319793808|ref|YP_004155448.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596271|gb|ADU37337.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 308 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 7/286 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 V V GSF AA L L+ S +SR I+ LE +G++LF R R L LT++G L+ Sbjct: 13 VLAAVVEGGSFASAANALGLTPSGVSRAIARLEARIGVRLFDRTTRSLNLTDEGRLLYAN 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + +E +S G+LR+ T + LL +L FL YP++ + L+ Sbjct: 73 VNPLVLGIEDAVTIAAGASGAVRGRLRVNTDAFTSRLLLAPHLPRFLDQYPELSLDLVAR 132 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ + D A+R +P SSSL+ RKL+ + A P YLK P +L H Sbjct: 133 DQLGDLVAEGFDIAVRFGEP-PSSSLVARKLMDTRIVTVATPAYLKRHGRPAKPADLVNH 191 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + P + + W R + + P L + +I+ + G G+A + Sbjct: 192 ACLQVRN--PVTGQPYTWEFQRGRKLVKVPTTGRLLLTDAGTILATALAGVGVAQIKAVG 249 Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++ D+ V + D F +Y YP K++AF +F+ Sbjct: 250 IQQHLDSGEFVDLFPDWPDERFPLYALYPSRHLPAAKVRAFIDFVM 295 >gi|172063631|ref|YP_001811282.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996148|gb|ACB67066.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 299 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 137/292 (46%), Gaps = 14/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR +F AA++L ++Q ++++Q+ LE V ++LF R RGL LT +G + Sbjct: 14 NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVAVQLFRRLPRGLALTREGLE 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S V L+ +P+ L ++TT L L +F L+PDI+++ Sbjct: 74 YF---SSVQRALQIISDATDALGQRPT-VLAVSTTPSFASKWLIPRLTDFGRLHPDIEVR 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIRL KP + L L + + A A+P L + + + Sbjct: 130 VIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDSGPPIRTPAD 189 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P+ +E D P PR S S L+I V G GIAL Sbjct: 190 LSMHALLHDAHDLWPEFLEKLGGTGQAD-PTKGPRFS----QSLLAI-DAAVAGQGIALT 243 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + +V+ + L R+ + S Y +P+A ++ L+A R ++F + Sbjct: 244 GEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLFAQ 295 >gi|107026220|ref|YP_623731.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692595|ref|YP_838128.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895594|gb|ABF78758.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116650595|gb|ABK11235.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 306 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +G+FT AA L L+ +++S I LE E+ +KLF R RG++LTE G + Sbjct: 10 LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 R T Y ++ + EL+++ +P+G LR+ T + L + L+ L F YP +++++ Sbjct: 70 RQTEPAYRQVMQARDELKDARSEPNGLLRV-TALPLARLLVIAPVLATFRERYPKVRLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 DN+ +DI+ D D IRL +Q + R + A+P YL P SI L Sbjct: 129 RYDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAAL 188 Query: 187 DKHNLITF 194 +H I F Sbjct: 189 GRHACIRF 196 >gi|291281194|ref|YP_003498012.1| putative LysR-like transcriptional regulator [Escherichia coli O55:H7 str. CB9615] gi|290761067|gb|ADD55028.1| Putative LysR-like transcriptional regulator [Escherichia coli O55:H7 str. CB9615] gi|320638573|gb|EFX08281.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320644034|gb|EFX13114.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320649316|gb|EFX17867.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320656880|gb|EFX24740.1| putative LysR-like transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662457|gb|EFX29846.1| putative LysR-like transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320665273|gb|EFX32363.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] Length = 329 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++ +++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 36 FALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 95 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 96 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323 >gi|260778271|ref|ZP_05887164.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606284|gb|EEX32569.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 296 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 12/288 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW + +F R+GS AA L++S S+I+R+I+ LE +G+ LF + G TL+ + Sbjct: 1 MDWSDVAIFLQTMRAGSARSAAASLNVSHSTITRRIASLEKSLGVSLFRKDTSGYTLSPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L R + L +IEL+ K SG++RI T + +LL + F YPDI Sbjct: 61 GESLQRYAEQAEMSLRQAEIELKGKDAKYSGEIRITTADAIANHLLMPTIAMFSQQYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++L ++ +D+ D A+R+ Q L+ R + I + YA PHYL+ Sbjct: 121 NAEVVLSSQVLDLGDHEVDIALRIMPMNQMPPEHLVGRIIGKIAICYYATPHYLEQHDPW 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +S LI +G+L K FN D P+ ISC +S + ++ G Sbjct: 181 MSDSSA---QLIGWGEL-GKESPIFN-----DSPLRHLSISCRMNHSAMQ-LEAAKQSMG 230 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 I LLP +I P LVR+ + ++ + +L+AF+ Sbjct: 231 ITLLPCFIADKEPTLVRVPKCEPEIKHDIWMLSKSEQREVARLRAFKE 278 >gi|260753525|ref|YP_003226418.1| LysR family transcriptional regulator [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552888|gb|ACV75834.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 331 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 9/288 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A + SFT A +QL +S S+I + I+ LE +G++LF+R R +TLT +G Sbjct: 6 SLNAFVHAAEARSFTTAGKQLGVSSSAIGKAIARLEGRLGVRLFHRSTRTITLTPEGGLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++E ++E+ ++ P GKLRI ++ L L+ + F+ L+P+I++ L Sbjct: 66 LERCRRIFSEVEAAELEISQTRGAPHGKLRI--SLPLVGMLMMPTISAFMRLWPNIELDL 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ + D IR + I S L+ R L + + + Y P + +L Sbjct: 124 DFTDRLVDVIDEGFDAVIRTGE-INDSRLMTRMLGSFNYQLVGSADYFAEHGVPETSADL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLP 245 H + +ED W V + + V+S + + Y S GIA LP Sbjct: 183 IAHRCLRHRYPSTGKLED--WPLIVRSNDTAVELPTVAVSSAIEPLVYMAERSLGIACLP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+ V++ L+ +ME+ + S T +P + + + K++ F +F+ Sbjct: 241 DFAVREQVQTGTLISVMENAVCHSGTFRILWPSSRQLSPKIRVFVDFV 288 >gi|167563227|ref|ZP_02356143.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] gi|167570408|ref|ZP_02363282.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 300 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPETLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWAFVDDGKVVSIRVSGTMECSDGAVLHEWCLDGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAGSRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|260549466|ref|ZP_05823685.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407575|gb|EEX01049.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 295 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 146/291 (50%), Gaps = 34/291 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L+ F V ++ +FT AA + ++QS++S+ I+ LE ++GIKL R R LTLT Sbjct: 1 MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQE-SSVK--PSGKLRIATTIDLGQNLLQGNLKEFLL 117 E GS+L + V +E + +++ SS+K PSG +RI+ + L LK+ + Sbjct: 61 EAGSRLIEL---VGQNIENIDLGVEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVK 117 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAP 171 YPDI ++L +N+ IDI+ + D +R+ +L+++ L+ + + A+P Sbjct: 118 QYPDISLELTSENRRIDIAKEGYDAGVRV------GNLVEKDLIAVPISKEIPFRLVASP 171 Query: 172 HYLKNCREPLSIQELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226 YL P SI +L KH L+T L+ +D N P+ L + Sbjct: 172 EYLDKYGTPKSIDDLKKHKGIYIRLLTDNSLMAWEFKDKNKSVFFRGPVQ------LVMT 225 Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFC 272 S + + G IA LP ++VK ++ LV ++E V P F +++ Sbjct: 226 SLDEMFDAVLDGCAIAYLPYFLVKPALEDKKLVSLLEQHAVTLPPFYLFYT 276 >gi|254450985|ref|ZP_05064422.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198265391|gb|EDY89661.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 298 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 139/289 (48%), Gaps = 15/289 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF + SGSF AA +L +S +++R ++ LE +G++L R R L+LT+ G++ Sbjct: 1 MEVFAAINDSGSFVQAANRLRMSPPAVTRAMNALEDRLGVQLLTRSTRQLSLTDPGTRFL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E + + G L ++ ++ + + ++EFL +P I + L+ Sbjct: 61 DSSRRLLSEIEAAEKQAVGEIGVAQGHLTVSASMTFSRMIAAPVVREFLAAHPRISVSLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ++ + D A+R+ + S+L+ ++L + A+P YL+ C P +L Sbjct: 121 ALDRVANLVEEGIDVAVRIGG-LPDSNLMAKRLGNVRRLFVASPAYLERCGVPTEPSDLK 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIAL 243 H++I F M +W + G PR L+VN + + G GI L Sbjct: 180 THSIIGFTG----TMSSHDWHYKTESQRGHVQLHPR---LEVNDASTALTAASDGEGITL 232 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+V + N LV ++ + + P+ ++ YP++ K++AF F Sbjct: 233 ALSYMVAEQVRNGELVPVLSEFLPPAEPIHLVYPQSKLVAPKVRAFLEF 281 >gi|77165387|ref|YP_343912.1| LysR family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254433400|ref|ZP_05046908.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27] gi|76883701|gb|ABA58382.1| transcriptional regulator, LysR family [Nitrosococcus oceani ATCC 19707] gi|207089733|gb|EDZ67004.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27] Length = 307 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 143/303 (47%), Gaps = 16/303 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V +GSF+ AA ++ S+S++S+ ++ LE +G +L R R L+LTE G Sbjct: 3 DLNLMAIFARVVEAGSFSEAARRMETSRSAVSKAVAKLEKNLGARLLNRSTRHLSLTESG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + + E + + +P G LR++ ++ G + L +F+ YPDI+ Sbjct: 63 AALVEYAARILEEAEQAEQVVSSLHAEPRGMLRVSASVAFGTLHIAPALADFVARYPDIK 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + + ++ +D++ + D IR+ +L+ RKL ++ A P Y + P Sbjct: 123 IDMAITDRPVDLAEEGYDMIIRVTGE-PDLNLVARKLAPVYRKLCATPEYFQQHGIPQIP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240 ++L H+ + + E W T P GE P L++N ++ Q G G Sbjct: 182 EDLVNHDCLDYT----LSGEQGYWHFT--GPEGEIAVPVSGPLRINDDDALAQAVRGGLG 235 Query: 241 IALLPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 IALLP + V KD L ++ + + VY Y K++ F +F+ F Sbjct: 236 IALLPTFTVGKDLQEGRLQAVLSEYLPVKRYVYALYLPTRHLAAKIRVFIDFLLTRFGPE 295 Query: 295 RDW 297 DW Sbjct: 296 PDW 298 >gi|50121897|ref|YP_051064.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49612423|emb|CAG75873.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 296 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 1/180 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +S DW+ LR F VAR+ S T A +L +SQS++SR+I LE+ + +LF H G LT Sbjct: 4 ISMDWNDLRFFLEVARTSSLTKTAIKLKVSQSTVSRRIGALESSLKTRLFLHHQTGYFLT 63 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++ + +V K+ T + ++ + P+G +R+AT + L +L+ L F+ YP Sbjct: 64 DVGKEVLKYAEDVEGKVGTLEKKISGRDLAPAGIVRLATAVTLANHLIIPQLPRFMACYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I ++L+ + + + AD A+RL +P Q+S I RK+ + Y + Y++ P Sbjct: 124 EIILELVTGVNTVSVVRNDADIALRLVRPEQNSLKI-RKVGVVASAVYGSETYVREHPAP 182 >gi|313669077|ref|YP_004049361.1| lysR-family transcriptional regulator [Neisseria lactamica ST-640] gi|313006539|emb|CBN88003.1| putative lysR-family transcriptional regulator [Neisseria lactamica 020-06] Length = 299 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S+ISR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAISRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE-----SGSLNTWAVLDAQGNPYKISPHFTASSGEILRLLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFV 289 >gi|311107332|ref|YP_003980185.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310762021|gb|ADP17470.1| bacterial regulatory helix-turn-helix protein, LysR family protein 137 [Achromobacter xylosoxidans A8] Length = 302 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L F SGSF A +L LS S+ + + LE +G++L +R R L T +G Sbjct: 10 FSGLVAFAATVESGSFAAAGRKLGLSASAAGKAVERLELRLGVRLLHRTTRSLGPTGEGE 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L+R +++ L+ + EL P G+L+I+ +G+ ++ L EF L +P++ + Sbjct: 70 VLYRHVAKILKDLQEAERELHLVQNAPRGRLKISVPTVMGRRIVLPALSEFHLSFPEVLV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + LD+ +D+ D D A+RL + + S L R++ A+P YL P + Sbjct: 130 DINLDDLIVDVIEDGYDLALRLGE-LADSGLQARRIGPHGFTTCASPAYLAQRGTPRTPA 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H I + P W ++P +P +N ++ + G GI + Sbjct: 189 DLSGHCCIYY--RFPTTGRPETWAFKGEQP-DKPLKPSGILNDGEALASAAISGLGIVQV 245 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P+Y+VKD+ L ++ED +V + +++AF +F Sbjct: 246 PNYLVKDDVEAGRLTPVLEDYTDSRGSVSLLWAPRSAEVARVRAFIDF 293 >gi|317053276|ref|YP_004119043.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316953015|gb|ADU72487.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 298 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 142/287 (49%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S+I + + LE ++G++LF+R R +TLT +GS Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAIGKSVVRLEEKLGVRLFHRSTRSVTLTAEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E Q+EL +++ +PSG+LR+ ++ L L+ L F+ YP I++ L Sbjct: 69 SRRILAEIEAAQLELSQATSEPSGRLRV--SLPLVSPLMLPVLAAFMRAYPKIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R P S L R+L T A+P YL P +L H Sbjct: 127 DRLVDVIEEGFDAVVRTGDP-ADSRLSARRLGTFRSLLVASPDYLAQRGTPHKPADLLDH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W+ D EPR+ + + N+ + + + + G GIA LP+ Sbjct: 186 TCLHY--RFPNSGKLEPWVLRHD--ADEPRLMVPTSMICNNIETRVCFALQGLGIAYLPE 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ L ++ + + + +P + + K++AF +F+ Sbjct: 242 FAIREPLAEGRLCAVLSEYAERTGVFHVLWPASKHPSPKVRAFVDFL 288 >gi|218677238|ref|YP_002396057.1| Transcriptional regulator [Vibrio splendidus LGP32] gi|218325506|emb|CAV27692.1| Transcriptional regulator [Vibrio splendidus LGP32] Length = 304 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 1/183 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V SGSF+ A L+++ SS++R I LE+++ LF R R L LTE+G H Sbjct: 5 IKIFDQVVESGSFSQAGRALNMAPSSVARNIDNLESKIKSSLFKRSTRQLMLTEEGQYFH 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++++ E+Q P G LR++ G L + EFL YP IQ++L Sbjct: 65 QQSAKILQDSNRLLEEMQGDQGPPEGVLRVSVFESFGNLCLTPLIPEFLERYPKIQVELE 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN +D++ + D AIR+ P Q S L R L+T + AAP Y++ +EL Sbjct: 125 LDNNVVDLNSENIDVAIRIGTP-QDSRLKARNLLTNNASLVAAPSYIEKYGTIDKPEELQ 183 Query: 188 KHN 190 HN Sbjct: 184 DHN 186 >gi|332305867|ref|YP_004433718.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173196|gb|AEE22450.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 302 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 14/294 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V + FTHAAE ++ +S ISR I LE + ++L R R +TE G + +R Sbjct: 9 FVKVVENKGFTHAAEMINSPKSKISRHIKKLEERLDMRLIQRTTRHFVVTEAGWEFYRHA 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +V +++E + +++ SGK+ I+ ++ + + + + FL YPDI+I+ + N Sbjct: 69 KKVVNEVELAENIVKKRRGTLSGKVNISCSLGVSNHFMPSLISAFLKQYPDIEIRQQVSN 128 Query: 131 KDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 +DI D IR K + SSLIQ+ L + +A+P +L L+ +L Sbjct: 129 DYVDIISKGLDMVIRGHEKNLPDSSLIQKHLAQVEWCLFASPAFLTQTMPILAPNDLQGI 188 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245 + FG ++ +W + R GE P + + ++ C+ G G+ LP Sbjct: 189 KALGFG------WKNDSWTWNLTRYDGEKAEVPHLPIFSSDDMSALKTACIDGLGVVSLP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 Y+ K D+ LVR++ + S + P +++ F +F+ + A++ Sbjct: 243 GYVCKKEVDDGQLVRVLPQWHSRSAALSIIIPSRKGVLAEVRTFIDFLQINAQE 296 >gi|239501455|ref|ZP_04660765.1| transcriptional regulator [Acinetobacter baumannii AB900] Length = 300 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 13/222 (5%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L VF +VA S + AA L + S ISR I+ LE ++GI+ F R R L Sbjct: 1 MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++++ G L L++FLL Sbjct: 61 SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + +S+LI R L + A+P YLK Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLAT 210 P + +EL H ITF G + P + E+ W+ T Sbjct: 180 GIPKNFEELKHHQCITFELPSSGKITPWFLKNDNEEIQWIPT 221 >gi|237808088|ref|YP_002892528.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237500349|gb|ACQ92942.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 300 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 137/288 (47%), Gaps = 8/288 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + L++F V+A++GSFT A+ L +S S++S I LET +G +LF R R + LTE G Sbjct: 5 NLNDLQLFLVIAKAGSFTKASALLGVSPSALSHSIKALETRMGFRLFNRTTRSIALTETG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++LE L ES + +G +RI + +L L+ F+ YP+I Sbjct: 65 EQLFGIIEPKLNELEREMQGLHESHNRLTGNIRITASEHAASAILSPLLESFIPQYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I++ ++N +DI D D IRL + ++ + R + M A A+P Y +P + Sbjct: 125 IEVSVNNGFVDIVNDRFDGGIRLGEYLEKDMVAVRVGPDVRMLAVASPDYFAKHPKPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L H+ I + + W + + ++S L NS I + G GIA Sbjct: 185 YDLQNHSCINL--RLSHQGGIYTWEFEQEGKETKVKVSGQLTFNSVSLIKNAALHGLGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAF 286 L + V D N LV + E P F+ + YP A ++ F Sbjct: 243 YLAEDFVADDIQNGRLVSVCE-TWCPYFSGFHLYYPSAKQHKPAFAKF 289 >gi|221199797|ref|ZP_03572840.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221207534|ref|ZP_03580543.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221172737|gb|EEE05175.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221180036|gb|EEE12440.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 320 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 144/298 (48%), Gaps = 22/298 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + + Sbjct: 7 MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + +SV P G+LR+ + G + + ++ +PD+ +++ Sbjct: 67 ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YLK P ++ +L Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGS 239 +HN + D N +T+D + + + L VN + + G+ Sbjct: 187 ARHNYLR---------RDSNA-STLDAMLSDAAAASRVALNGNLIVNHLEGLRAAVLAGA 236 Query: 240 GIALLPDYIVKDNPNLVRIME---DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIALL +V D+ R+M D + P +Y Y + K+++F +F+ + Sbjct: 237 GIALLGTEVVGDDIEAGRLMPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|167840408|ref|ZP_02467092.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 289 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 12/259 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F V RS + T AA+QL + Q+++ R++ GLE +G +LF R G LT Sbjct: 1 MNWDDVRIFLAVHRSVTLTGAAQQLGIDQTTVGRRLGGLEGALGSRLFLRTTEGFVLTRS 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ E+ + + + + + G +R+ TT L + + ++ +P I Sbjct: 61 GEQVLETAREMERLAVSFERRSEGADERIEGDVRVTTTDTLAIDFVIPAIERLQTRHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + +D+S AD AIR +P + LI R+L + + YA+ Y+ EP Sbjct: 121 RVLLSTTPRLLDLSRREADIAIRTERP-ELQGLIVRRLGSWEVGLYASRSYVARRGEPRP 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239 E H+L + + K D +GE R +++S L + + G Sbjct: 180 GGEFSGHDLAVYQPGVTKRQHDTF--------VGESRARGRVVAELDSSLMLSAFVRAGL 231 Query: 240 GIALLPDYIVKDNPNLVRI 258 + LP Y+ + P LVRI Sbjct: 232 ALGELPTYMAQRYPELVRI 250 >gi|169795723|ref|YP_001713516.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|184158374|ref|YP_001846713.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|260554785|ref|ZP_05827006.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|301348273|ref|ZP_07229014.1| transcriptional regulator [Acinetobacter baumannii AB056] gi|301512453|ref|ZP_07237690.1| transcriptional regulator [Acinetobacter baumannii AB058] gi|301594589|ref|ZP_07239597.1| transcriptional regulator [Acinetobacter baumannii AB059] gi|332873866|ref|ZP_08441806.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|169148650|emb|CAM86516.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|183209968|gb|ACC57366.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|260411327|gb|EEX04624.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|322508700|gb|ADX04154.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323518307|gb|ADX92688.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332737852|gb|EGJ68739.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 300 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QN L L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QLI+ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237 S EL H +++ + + ++ L D + + ++S + N Y+ + Q Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD +D + LV+I+ D + YP G L A R FI Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|308188569|ref|YP_003932700.1| HTH-type transcriptional activator aaeR [Pantoea vagans C9-1] gi|308059079|gb|ADO11251.1| HTH-type transcriptional activator aaeR [Pantoea vagans C9-1] Length = 299 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 5/270 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GSFT AAE L + + S+SRQI LE ++ +L +R R + LT+ G + Sbjct: 7 MQVFVRVAEMGSFTRAAESLGIPKGSVSRQIQALENQMATRLLHRTTRRVQLTQDGLVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q SGKLR+ ++ + + L EFL YP ++I+L Sbjct: 67 DRCLDLLSMIDDMDSLFQHEPASLSGKLRVDMSVAMATGFILPRLPEFLQHYPGVEIELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC IR+ + ++ S LI RK+ T + A+P YL P+ ++EL Sbjct: 127 SSDRQVDVIREGFDCVIRVGE-LKDSGLIARKIGTHTLINCASPGYLSRFGMPIRLEELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H ++ + + + F + + VNS + C+ G GI +P Sbjct: 186 QHAMVHYSQQLGQASPGFEYFDGRQCHYVHTG-GVVTVNSTETYRAACLAGLGIIQVPAA 244 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274 ++ + LV ++ ++ YP Sbjct: 245 GIQTLLERGELVEVLHRFPARPMPIHLLYP 274 >gi|307728729|ref|YP_003905953.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583264|gb|ADN56662.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 302 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + F VAR GSFT AA +L +SQS++S+ I LE +G++L R R + TE G Sbjct: 5 DLSDITAFLSVAREGSFTKAAARLGVSQSALSQTIRNLEARLGLRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +++ L KP+G +RIA + +L ++ L YPDI Sbjct: 65 ERLITAVGPLLDEIQAELAALSALRDKPAGNVRIAAGEHAAETVLWPAVERLLPDYPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++++DN DI + D IRL + + + + + M P Y + +P + Sbjct: 125 VEIVIDNGLTDIVGERLDAGIRLGEQVAGNMVAVPIGPDMRMAIVGTPDYFRRHPKPKTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L +HN I +P + W R + L N+ ++ + GSG+A Sbjct: 185 QDLTRHNCINI--RLPTAGGLYAWEFEKGGRALKVRVEGQLVFNTATMSVRAALAGSGLA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ V + L R++ D PSF + Y Sbjct: 243 CVPEERVLSHIRSGELTRVLLD-WCPSFAGFHLY 275 >gi|167837076|ref|ZP_02463959.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 300 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVVAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + H ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 66 LEDCHRIIHDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPETLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +H+ + L + W D + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHHCLA---LAANANQQRGWTFVDDGEVASIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|118472966|ref|YP_886349.1| LysR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118174253|gb|ABK75149.1| transcriptional regulator, LysR family protein [Mycobacterium smegmatis str. MC2 155] Length = 310 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 141/294 (47%), Gaps = 15/294 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F +A +G+ T AA +S S +SR++ LE +G L +R ARGL LT +G Sbjct: 3 DVGDLEFFVTLAAAGTMTEAARHWGVSVSVVSRRLKALEERLGTPLVHRRARGLELTAEG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H SE+ +L+ + L +G +R+ +T+ LG+ + L +F + ++ Sbjct: 63 QQYHVRGSEILQQLKDLESTLNPDPKDLTGSIRVISTVGLGRVHIAPLLHDFRRRHRSVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + + S+ D AI++ + ++ SSL R+L+ A+P YL P + Sbjct: 123 ISLELTSLPLSASVPGFDIAIQVGR-VRDSSLAIRQLLPNRRVVVASPDYLDAHGAPADL 181 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H L+ G+ I + ++D R P L N +++ ++C+ G+ Sbjct: 182 DDLKNHELLVVRENEGESIWRFVKD-------GRETAIPVRGGLICNDGIAVTEWCLAGA 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A+ + V LV ++ DV TP V + ++ + +++ +F+ Sbjct: 235 GLAMRSIWHVAPYVREGRLVHVLPDVETPEADVVALFDAGVRTSPRVRTLLSFL 288 >gi|59711673|ref|YP_204449.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|59479774|gb|AAW85561.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 300 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F V +GS T AAE+L+L++S+IS+++S LE ++G+KL R R +LTE G Sbjct: 5 ESMRIFITVVETGSITKAAERLNLAKSAISKRLSELEHQLGVKLLNRTTRTSSLTEAGQV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ + +S K +G L++A + G L L F L+P++++ Sbjct: 65 YLNKCKLILDEVDDLHCHISSTSSKLNGVLKLAVPLTFGLKHLVPALDNFAKLHPELKLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +K ID+ D D AIR+ + +S+L + L IH +P YL + + Sbjct: 125 IDFSDKKIDLVEDGVDLAIRIGS-LSNSTLRAKPLAPIHHVLCVSPDYLTEHGHITTPND 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ + + + + ++ + P S N+ + V G G+ P Sbjct: 184 LKSHKLLRYSQ---QPLSGVELIDNNNKTMTVPMESFCIANNGDFLKTMAVSGHGVLFTP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +IV + N +L+ IM D S Y YPE K++ +F+ Sbjct: 241 KFIVWEELANGSLIPIMTDYRFNSIKAYAVYPETRYLPRKVRMLIDFL 288 >gi|77459579|ref|YP_349086.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383582|gb|ABA75095.1| putative LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 295 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 7/259 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA +L+ + ++++R I +E +G LF +HA+G +T Sbjct: 2 FDWNDLRFFLELQRSGRLLTAARRLNTTHATVARHIEAIEKSLGTALFVQHAQGYEMTPA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ +S+ P GK+R+ T LG L + Y + Sbjct: 62 GEALLKHAEAMENVALLAQEEITQSTA-PLGKIRVGVTEGLGIMFLASRMIGLFERYLGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + L+ RKL + YA+ YL N S Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-AADMLVTRKLTDYRLALYASRAYLDNAPPLRS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H I + D + E L ++ PR+ S ++ Q G GIA Sbjct: 180 REDLGRHAWIGYVDDLLFSQE----LMFLNSFCRNPRV-VFHSTSVIAQQQAARSGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIMED 261 +LP Y+ +P+LV ++ D Sbjct: 235 VLPCYMAASDPDLVALLPD 253 >gi|329851256|ref|ZP_08266013.1| bacterial regulatory helix-turn-helix protein, lysR family protein [Asticcacaulis biprosthecum C19] gi|328840102|gb|EGF89674.1| bacterial regulatory helix-turn-helix protein, lysR family protein [Asticcacaulis biprosthecum C19] Length = 302 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 6/293 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F V + SFT AA++L +++ +S+Q++ LE E+G L R R + TE G Sbjct: 8 NRLAYFTAVVETRSFTAAAQRLSTTKAVVSQQVARLEEEIGTTLLIRTTRNVHATEAGLA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + E L E +VKPSG LRI T D G +++ + F LYP ++ Sbjct: 68 FYARCITILREAEDAFDALAERAVKPSGLLRITATFDYGISVIVPKIAAFTALYPACEVD 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ID+ D AIR+ + S+L R++ + A+P S + Sbjct: 128 LSLSDERIDLVSSNIDMAIRVGW-LSDSTLQARRIDSFRQILVASPQMAPAVSHLDSPRA 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ + L + +N+ D PI + + +++ L ++ G+G+++LP Sbjct: 187 LETLPFVANSAL--RHPLHWNFSHGEDDPIAVRLRAAVSIDATLGVLAAVQAGAGLSVLP 244 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 DYI + L+ ++ D P ++ +P A +AF + + A+ Sbjct: 245 DYIAAPLIGSGELIHVLPDWSLPIGGIFVVFPAARYRPAHARAFVDLLSTPAK 297 >gi|218507938|ref|ZP_03505816.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Brasil 5] Length = 260 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 5/244 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V +GS + AA +L LS+S +S +++ LE +G L +R R LTLTE G+ Sbjct: 5 EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLTLTEDGAV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++E ++ E SG +RIA + G+ L L FL +PDI + Sbjct: 65 FLERAGRIVREIEEAAADMAERRGALSGPIRIAAPVTFGRMHLGPALYPFLAQHPDIHLT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D++ +D + D D IR P+ S L+ KL AAP YL P S+ + Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCAAPDYLARQGMPTSLAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H I + + + + D+ + T + I L +N+ + + G GIALLP Sbjct: 184 LNNHRGIFYTN---RGVADWRF-QTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239 Query: 246 DYIV 249 +I Sbjct: 240 AFIA 243 >gi|193077725|gb|ABO12583.2| regulatory protein LysR:LysR, substrate-binding [Acinetobacter baumannii ATCC 17978] Length = 300 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 135/282 (47%), Gaps = 27/282 (9%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L VF +VA S + AA L + S ISR I+ LE ++GI+ F R R L Sbjct: 1 MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++++ G L L++FLL Sbjct: 61 SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + +S+LI R L + A+P YLK Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSY 228 P +++EL H I F G + P + E+ W+ P L Sbjct: 180 GIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWI---------PTNRILVKEDI 230 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270 + ++ G GI D+IV + +I + + P T Y Sbjct: 231 VGVVTLAESGLGICQSYDFIVNE-----KIQQGKLQPILTTY 267 >gi|146282478|ref|YP_001172631.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145570683|gb|ABP79789.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] Length = 311 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSFT AA Q S + +SR +S LE + +L R R L LTE G++ Sbjct: 7 MRAFVRVVDAGSFTAAARQTDTSTAQVSRLVSELENHLHARLLQRTTRRLALTEVGARFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E+ +L+ + E + + P G+LR+ +T LG LL G + YP++ + L Sbjct: 67 ERSREILAQLDDARQEACGAHLTPRGRLRVHSTTGLGIQLLSGLAGHYCERYPEVSLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D I L + + S LI ++L + AAP YL+ P +L Sbjct: 127 LSQRQPDLLEAGLDVIITLSRDLPDSELIAQRLGPVFHVVCAAPSYLQRHGVPRRPTDLH 186 Query: 188 KHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H + D P +D++++ V RP GE +VN ++ G GI L Sbjct: 187 NHRCLRLLD--PVFADDWHFVGDGVEEVIRP-GE----TFKVNVAEAMASAAEAGMGICL 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY+ L+R++ ++ YP K++ + +F+ Sbjct: 240 LPDYVAAPALQRGTLLRLLPQYRLQEKQIHALYPSRRFLDAKIRTWLDFL 289 >gi|315128038|ref|YP_004070041.1| transcriptional regulator, LysR family protein [Pseudoalteromonas sp. SM9913] gi|315016552|gb|ADT69890.1| putative transcriptional regulator, LysR family protein [Pseudoalteromonas sp. SM9913] Length = 298 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 5/287 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW L+V Y VAR G+ T AAE L + S++ R+I+ LE + +LF+RHARG +TE G Sbjct: 7 DWQDLKVAYEVARLGTLTAAAEVLDVHHSTVLRRINNLEKSLNARLFHRHARGYKVTEIG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +KL + +LE ++ + G L + TT+ ++L ++F L+P +Q Sbjct: 67 AKLFTTAQAINGELERLHNDIIAADSTLQGSL-LLTTVSGFIDVLSEVCEQFQTLHPQVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+I+D K + + A A+R I + L + YA+ HY+ P ++ Sbjct: 126 LQVIMDQKRLRLDHGQAHIAVRAGPRPDEGDYIAQHLAALSSGFYASKHYISRYGLPQTL 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ ++ + F W VD I P L+V+ + V G GI Sbjct: 186 AQLSLHSFVSGVAGYNAKVPYFAW---VDENI-PPSQVKLRVSETSEATRAIVKGLGIGG 241 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + +LV ++ + ++ ++ + T K++AF + Sbjct: 242 LQHDVAAQYSDLVPVLPNELSWPTDLWLVTHHLVHRTAKVQAFSQLL 288 >gi|104782411|ref|YP_608909.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95111398|emb|CAK16118.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 303 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 142/287 (49%), Gaps = 11/287 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A + L +S S++ ++++ LE +G++LF+R R +TLT +G+ Sbjct: 9 VFNRVAETRSFVAAGQSLGISASAVGKRVARLEARLGVRLFHRSTRSITLTAEGALFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T+ L ++S P G+LR++ G L+ L EF+ YPDI++ L Sbjct: 69 SRRILAEIEATEQALSQASGTPRGRLRVSLPQVTG--LVMPALAEFMARYPDIELDLDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQELDK 188 ++ +DI + D +R +P+ S + K + H A+P YL+ P +EL Sbjct: 127 DRMVDIVGEGFDVVMRGGQPLDSR--LNAKFLGHFQHCLVASPQYLRERGTPQHPRELAA 184 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDY 247 H+ + + P + W + P + I V +++ + + + GI LPD+ Sbjct: 185 HSCLHY--RFPSSGKLETWPLRREHPEQDYDIPISMVCNHVETRVCFALNHRGITCLPDF 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 V+ + +LV +++ + + Y +P + KL+ F +F+ Sbjct: 243 NVRKELASGSLVSVLDSFMERRGSFYLLWPSGRQMPPKLRVFIDFML 289 >gi|327480732|gb|AEA84042.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 311 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 132/290 (45%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSFT AA Q S + +SR +S LE + +L R R L LTE G++ Sbjct: 7 MRAFVRVVDTGSFTAAARQTDTSTAQVSRLVSELENHLHARLLQRTTRRLALTEVGARFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E+ +L+ + E + + P G+LR+ +T LG LL G + YP++ + L Sbjct: 67 ERSREILAQLDDARQEACGAHLMPRGRLRVHSTTGLGIQLLSGLAGHYCERYPEVSLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D I L + + S LI ++L + AAP YL+ P +L Sbjct: 127 LSQRQPDLLEAGLDVIITLSRDLPDSELIAQRLGPVFHVVCAAPSYLQRHGVPRRPTDLH 186 Query: 188 KHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H + D P +D+ N + V RP GE +VN ++ G GI L Sbjct: 187 DHRCLRLLD--PVFADDWHFVGNGVEEVIRP-GE----TFKVNVAEAMASAAEAGMGICL 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY+ L+R++ ++ YP K++ + +F+ Sbjct: 240 LPDYVAAPALQRGTLLRLLPQYRLQEKQIHALYPSRRFLDAKIRTWLDFL 289 >gi|17544784|ref|NP_518186.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17427073|emb|CAD13593.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 312 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 7/295 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF AA+ L +S + ++R ++ LE +G +L R R L+LT+ G Sbjct: 7 MRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + S G LRI + G ++L L F LYP++ + Sbjct: 67 QRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI D D I + + S L+ R++++ M A P YL+ P +++ Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDIA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246 H +I P+ ++ A + I P L V S +M VL GIA+L Sbjct: 187 DHRVIAMWH--PQLRHEWEMTAPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 Y+ + ++ LVR++ P ++ YP K++ F +++ +A + K Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEAK 298 >gi|126724486|ref|ZP_01740329.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] gi|126705650|gb|EBA04740.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] Length = 299 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 10/285 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DW ++ F VA+ GS + AA + SQ +I R I LE + + LF R +RG LTE Sbjct: 7 SLDWSLVQSFLAVAQEGSLSAAARKSGQSQPTIGRHIKSLEAQFDVPLFKRVSRGYELTE 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L R E++ + S + +G +RI + + +LL + + +P Sbjct: 67 VGQNLLRPAQEMHRAALNLNLSAAGHSTELAGTVRITASDLVAHHLLPPIIAKMRTEHPG 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I ++ N ++ AD A+R+ +P Q +I R L + M Y A YL+ P Sbjct: 127 ISIDVVASNSSDNLLYREADIAVRMYRPTQ-LDVITRHLGGLAMGVYGAKSYLEEHGRPQ 185 Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ++L +H + + D I + M + W AT R + + R C Y Q G Sbjct: 186 TAEDLFQHAFVGYDRDDQIIRGMREMGWPAT--REMFQTR--CDDQAVY---WQLVCAGC 238 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G+ + I + +++ D+ P V+ EAL+ T +++ Sbjct: 239 GLGITQRSIGDQKIGVEQVVPDLPIPKLPVWLTAHEALRQTPRIR 283 >gi|237800826|ref|ZP_04589287.1| regulatory protein, LysR substrate-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023683|gb|EGI03740.1| regulatory protein, LysR substrate-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 301 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 136/303 (44%), Gaps = 17/303 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ PSG LRI + G +L L EF +P +++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAEFSRHFPQVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D A+RL ++S LI R + + AAP YL P + Sbjct: 124 DLVLTNQRLDMIDNGFDVAVRLGNIPEASPLIARPMQDYTLTICAAPAYLARHGAPTHPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +L HN + F P E W T P GE + L N+ + Q Sbjct: 184 DLRAHNCLPFA--YPAGDEWRTAGTQWRMT--GPEGEVLVEVDGSLIANTSAGLYQAARA 239 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G GI +LPD +V+ + LV ++ D P + Y +++ +L R+F+ Sbjct: 240 GMGIVMLPDALVQRDLQEGRLVALLPDYHLPRRPMNLLY---VQDRYRLPKLRSFVEFAL 296 Query: 295 RDW 297 + W Sbjct: 297 QRW 299 >gi|261342001|ref|ZP_05969859.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] gi|288315916|gb|EFC54854.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] Length = 299 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 8/247 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE L L + S+SRQI LE ++G +L +R R ++LT+ G + Sbjct: 7 MQLFLRVAELESFSRAAETLSLPKGSVSRQIQALENQLGTQLLHRTTRRVSLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SG+LR+ + + +NL+ L FL YP I+++L Sbjct: 67 ERAKDLLTNLDELDGMFQHDPSSISGRLRVDMPVGVARNLVIPKLPAFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + + A+P YL P ++ +L Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLIARPLGKLSVINCASPDYLTRFGYPETLDDLA 185 Query: 188 KHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H +I + + P+ E +N T G L VNS + C+ G GI + Sbjct: 186 SHAVIHYSATLGTRPQGFEFYNGSTTQWVKTG----GVLTVNSTETYQAACIAGLGIIQV 241 Query: 245 PDYIVKD 251 P V+D Sbjct: 242 PRVGVRD 248 >gi|91776142|ref|YP_545898.1| LysR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710129|gb|ABE50057.1| transcriptional regulator, LysR family [Methylobacillus flagellatus KT] Length = 338 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 144/287 (50%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA+ L L +++++ I LE + ++L R R L+LT G+ + Sbjct: 8 MQVFTRVVDANSFTRAADSLGLPRTTVTTTIQALEGLLNVRLLNRTTRRLSLTPDGAAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ T+ ++ + PSG+LRI +G+ ++ L +F YPD+++ + Sbjct: 68 ERCMRILAEVDETEALFRDVTRGPSGRLRIDVPPSIGRLIIIPKLCDFYTRYPDVELVIG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC +R+ +Q SS++ R++ T H+ AAP YL P ++ +L Sbjct: 128 MSDRPVDMVQEAVDCVVRVGD-LQDSSMVARRIGTFHIVTCAAPRYLAEYGMPGTLDDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 H+ + + + + +W ++ + E +++ + + C L G G+ P Sbjct: 187 HHHAVHY--FSSRTGRNMDWDFVIEGKVTEVKMAGRVAVNDSEVYVACALQGFGLIQAPR 244 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V ++ LV ++ S + Y + K++AF ++I Sbjct: 245 YMVLPQLESGELVEVLPQWQPSSHPISVVYLHNRHLSPKVRAFVDWI 291 >gi|254791464|ref|YP_003076301.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|261223766|ref|ZP_05938047.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261255975|ref|ZP_05948508.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|254590864|gb|ACT70225.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. TW14359] Length = 329 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++ +++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 36 FALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 95 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 96 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323 >gi|194364706|ref|YP_002027316.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347510|gb|ACF50633.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 291 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 24/294 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA GSFT AAEQL +S + + I LE +G L R+ R LTE GS Sbjct: 7 MQAFVAVAERGSFTGAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAGSAYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +++ + ++ V+P G LR++ G +L L L P + I+L Sbjct: 67 AGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPTTWGSCVLAPVLSGLLREQPLLNIELD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ D D AIR+ P+ S ++ R L M AAP YL+ P + ++L Sbjct: 127 LSNRRVDLIEDGFDVAIRV-GPLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTPEDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 H+ C+ W LA ++ E R++C N +++ + V G+G Sbjct: 186 GHD----------CLSHLAWRGGHGWQLANGEQVDWEARLTC---NDGVALREAAVAGTG 232 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + L P ++ L ++ D + ++ Y + +L+ F +F+ Sbjct: 233 LVLQPTALLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVM 286 >gi|270262555|ref|ZP_06190826.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043239|gb|EFA16332.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 306 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 140/304 (46%), Gaps = 33/304 (10%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE + +KL +R R L +T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHISKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQ Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC +R + I SLI R + + + Y AP Y++ P + Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-INDLSLIARHVGDLQIGVYVAPSYVERLGAPAHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCME--------DFNWLATVDRPIGEPRISCLQVNSYL 229 EL+ H ++ F G + P + N++ VD N+YL Sbjct: 183 ELENTDHRIVGFMSSRTGKIDPLVLRRESEHIEITGNYVLAVD-----------DGNAYL 231 Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + G G+ LP Y+ + +L+ + E +Y +P KL+ F Sbjct: 232 ---EAGLAGLGVIALPVYMATAHQACGSLIPLFEHWRINPMPLYLAFPPNRHVNAKLRVF 288 Query: 287 RNFI 290 ++I Sbjct: 289 IDWI 292 >gi|149926329|ref|ZP_01914591.1| LysR protein [Limnobacter sp. MED105] gi|149825147|gb|EDM84359.1| LysR protein [Limnobacter sp. MED105] Length = 295 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 139/291 (47%), Gaps = 16/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V +GSFT AA+ L LS++++++ I LE + IKL R R + +T G+ + Sbjct: 1 MKAFVRVVETGSFTKAADTLGLSRTTVTQLIQQLEAHLRIKLLNRTTRKVNVTNDGAAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + L +S P G LR+ +L L +F +P IQ++L Sbjct: 61 ERVVRLLTELSEIENSLPSASSAPRGLLRVDVPSPFANIVLVPALPDFFAQFPGIQLELG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 ++ +D+ D DC +R + I +LI R + + + YAAP YLK PL EL Sbjct: 121 ASDRKVDLISDNVDCVVRGGE-ITEGALIARHVGDLQLGVYAAPSYLKRSGTPLHPHELR 179 Query: 187 -DKHNLITF--GDLIPKCM-EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H ++ + + IP M +D + R S L+++ + + ++G G+ Sbjct: 180 ESEHRIVRYRWANEIPYAMYKDGERVRLQGR-------SMLEIDDGNAYLTAGLVGLGVL 232 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+Y+ K ++ LV++ D S +Y Y + +L+ F +I Sbjct: 233 WLPEYMAKSHIESGALVQLFLDWQLDSMPLYVAYAPNRYASKQLRVFIEWI 283 >gi|78067453|ref|YP_370222.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77968198|gb|ABB09578.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 324 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 142/287 (49%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT++G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTQEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ +L F YPDI ++L Sbjct: 67 EHCMKIISEIAEADASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPDITLELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPHEIADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + W+ +D E R++ + VN + + + G G+ Sbjct: 186 EHHAVNYRS--SHGARAIPWVFMIDGKPFEVRMNGGVTVNDSDAYVTCGLEGFGMIQPTL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V +N +LV ++ D + YP + K++ F ++I Sbjct: 244 FMVLENLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWI 290 >gi|319781947|ref|YP_004141423.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167835|gb|ADV11373.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 304 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 13/281 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +GSFT A E+LH+++S+I + I+ LE +G++L R R L+ T +G + Sbjct: 12 FVQAVEAGSFTSAGERLHVTKSAIGKSIAQLEQRLGVRLLNRTTRSLSPTSEGISYYEAC 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 ++E Q L PSG+LR+ + G+ + L E +PD+ +++ ++ Sbjct: 72 VRALAEIEAAQSLLASRRQVPSGRLRVDVPLAFGRRCVAPVLFEISRKFPDLTVEISFND 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D AIR+ + S SL R+L AAP YL P S+++L H+ Sbjct: 132 RRVDLIEEGIDLAIRMGELDDSLSLAARRLYAQRSAICAAPDYLDRHGRPQSVEDLADHS 191 Query: 191 LITFGD---LIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +I +G + P + + LAT + + R L + ++ + G GIA LP Sbjct: 192 VIGYGREGIVRPWVIRHSDGHLATF---VPKAR---LVLGHGEPMLDAALAGCGIAFLPT 245 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 ++ D + +L ++ D + + V+ +P T K++ Sbjct: 246 WLAADSLKSGDLEMVLSDCLVENIVVHAVWPVTRALTPKVR 286 >gi|222087545|ref|YP_002546082.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724993|gb|ACM28149.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 298 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F GSF+ A+ L++S + + + LE +G++L R R LTE GS + Sbjct: 7 MSIFVKAVELGSFSAVADALNMSPQLVGKHVQFLEHHLGVRLLNRTTRRQHLTEVGSLFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E+ + E+ P G+LR++ + G N L L E+L YP++ I L Sbjct: 67 ERSRNILAEVESAEALAAETRAVPRGRLRVSAPVTFGINALAPKLPEYLKAYPEVSIDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D R+ + + S LI R+L + AAP YL++ P + +L Sbjct: 127 LSNRLVDLIDEGYDAIFRVGE-LSDSGLIARRLDPYRLIICAAPRYLESRGTPRTPGDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + F + F VD PI L V+S +++Q V G GI P Sbjct: 186 DHECLIFSHTRLRTHWAFEGPDGYVDVPIS----GRLTVDSGEALLQAAVAGLGIIFQPL 241 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ ++ LV I+ + P+ ++ Y + T KL++F +++ Sbjct: 242 ELIRASIESGQLVPILPEYRIPTRPLHVLYAPDRRITPKLRSFLDYV 288 >gi|85706941|ref|ZP_01038031.1| transcriptional regulator, LysR family protein [Roseovarius sp. 217] gi|85668552|gb|EAQ23423.1| transcriptional regulator, LysR family protein [Roseovarius sp. 217] Length = 306 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 11/252 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE +G++LF R R LT TEQG Sbjct: 5 DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLGVRLFQRTTRSLTPTEQGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + SE+ +E + ++ + P G L +A + +G+ L+ + EFL YP+++++ Sbjct: 65 FYSGASEILEAVERAEAQIVNMTENPKGSLYVAAPLGVGRRLIAPQVPEFLQAYPEVKVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A L +P + S+L RK+ + A+P Y+ P S + Sbjct: 125 LRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVARILCASPDYVAKRGLPESGDD 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 L D H + P E F WL + P G R + + + + + G G Sbjct: 184 LIADGHECLNL--RFPGATE-FQWLLST--PDGPKRFRVSGRCESDDGDVLTDWALAGQG 238 Query: 241 IALLPDYIVKDN 252 +AL P + + ++ Sbjct: 239 VALKPIFEIAEH 250 >gi|220915698|ref|YP_002491002.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953552|gb|ACL63936.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 319 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 133/286 (46%), Gaps = 7/286 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+VF VA +G F A +L LS +++R I+ LE VG +LF R R + TE G + Sbjct: 6 QLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGLRF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 V LET + E P+G L + ++ G+ L ++ FL L+P + L Sbjct: 66 LEPARRVLADLETAEREAAGEGAAPAGHLTLTASVTFGRWALAPVVRAFLGLHPGVTASL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D A+R+ + + S L+ RK+ I A+P YL+ P S L Sbjct: 126 VLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPSSPARL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +I F L ++ ++ R + P L VN L+ + G GI L Sbjct: 185 RAHAVIAFTGL--HAGREWRFVDG-GRQVAVPVAPRLVVNDALAALDAAEAGDGITLALS 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+V + LV ++ P V +P A K++AF +F Sbjct: 242 YMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287 >gi|299068360|emb|CBJ39584.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 312 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 7/295 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF AA+ L +S + ++R ++ LE +G +L R R L+LT+ G Sbjct: 7 MRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + S G LRI + G ++L L F LYP++ + Sbjct: 67 QRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI D D I + + S L+ R++++ M A P YL+ P +++ Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDIA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246 H +I P+ ++ A + I P L V S +M VL GIA+L Sbjct: 187 DHRVIAMWH--PQLRHEWEMTAPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 Y+ + ++ LVR++ P ++ YP K++ F +++ +A + K Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298 >gi|330819194|ref|YP_004348056.1| transcriptional regulator, lysr family [Burkholderia gladioli BSR3] gi|327371189|gb|AEA62544.1| transcriptional regulator, lysr family [Burkholderia gladioli BSR3] Length = 310 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 10/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF +A SG F AA+ L + ++++S+ I LET + +KLF R R + +TE+G + Sbjct: 7 LRVFVRIAESGGFGKAADTLDVPRATVSKLIQELETHLRVKLFQRSTRKVVVTEEGQSYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++ L+ + KP G++R+ +L L EF +PDIQ+ + Sbjct: 67 RNVVKLLADLDEMDGRFADVHGKPRGRVRVDIGSSFANLILLPRLPEFRRRFPDIQLDVG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ D+ + DC IR + + +SL+ R++ ++ YA+ YL P EL Sbjct: 127 VSDRHADLIGEGVDCVIRGGE-LSDASLVARRIASLEWGTYASAAYLAERGTPGHPDELR 185 Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSG 240 + H L + G P E TV+ P G + + ++L S++ +G Sbjct: 186 EGHELSGYFSSLTGRPFPMLFERGGERLTVE-PKGARAVCVNESTAHLTSLVSGLGVGQT 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A + V LVRI+ P V+ + +A N+ +L+ F +++ Sbjct: 245 FAFMAQPAVARG-ELVRILPKWTRPVQPVHVVFAQARYNSARLRVFVDWV 293 >gi|326388714|ref|ZP_08210306.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206804|gb|EGD57629.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 315 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 137/299 (45%), Gaps = 12/299 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F V +GSF AAE L LS+ ++S+ + LE +GI L +R +R L LTE G Sbjct: 5 DLEAWAIFAKVVETGSFAAAAEALGLSKPTVSKAMGRLEARLGIPLLHRTSRRLALTESG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + E + P G +R+A + G + L EFL +P + Sbjct: 65 RGVLDKARRILADGEAAEAEARADGDIPRGLVRLAVPMSFGLRHVAPLLPEFLAAWPLVS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +++ D +R+ ++ SSL R+L T+ AAP YL P Sbjct: 125 VDLDLSDTLVNVVAGGHDIVLRIAG-LEDSSLRARRLCTVRRPLVAAPAYLAVHGTPTHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 +EL H + + +L + F + GE ++ L N+ ++ + G G Sbjct: 184 RELSAHQGLLYTNLEHPGLWRFTHPSE-----GEYGVTVHGRLGANNADALAPALLAGQG 238 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IAL PD++V D+ LV +M D P ++ P + +++ +F+ + RD Sbjct: 239 IALQPDFMVWDHLAKGTLVEVMSDWRIPDIALHLVTPPGKQRPARVRVLLDFLAARLRD 297 >gi|218549989|ref|YP_002383780.1| LysR family transcriptional regulator [Escherichia fergusonii ATCC 35469] gi|218357530|emb|CAQ90169.1| putative transcriptional regulator, lysR family [Escherichia fergusonii ATCC 35469] Length = 297 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S I LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L N + + G GIA Sbjct: 185 YELQNHQCINM--RLPTAGGIYHWEFEREGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|167893701|ref|ZP_02481103.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei 7894] gi|167918407|ref|ZP_02505498.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei BCC215] gi|237811722|ref|YP_002896173.1| LysR substrate binding domain protein [Burkholderia pseudomallei MSHR346] gi|254298079|ref|ZP_04965532.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157808036|gb|EDO85206.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|237503859|gb|ACQ96177.1| LysR substrate binding domain protein [Burkholderia pseudomallei MSHR346] Length = 299 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|171057523|ref|YP_001789872.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774968|gb|ACB33107.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 307 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 10/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++ F VA GS + AAE+L +S ++ SR + LE +G +L R R L LTE G Sbjct: 4 WSQIEFFVQVAELGSLSRAAEKLDMSNAAASRTLVALEERLGARLVERTTRRLWLTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 HR + ++ + + E++++P+G LR+ +++ + L EF YP + + Sbjct: 64 AFHRRCVAMLAEMAEAEAAVLETTLQPTGLLRVTSSVSFAMLHIAPGLPEFSRRYPKLNV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q++ N+ D D AIR R+ S + R+L AP Y P + Sbjct: 124 QIVAANRYPDFIEAGIDVAIRTREVEGDSGITVRRLAHTRRVLAGAPGYFAVHGTPRTPD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H L+ + +D N L + D S L N I + G GI Sbjct: 184 DLKQHRLLVY-----NLAKDPNVLHFSRGDERCDTSITSMLDSNEGQVICSAGLAGLGIV 238 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + P YI+ D LV ++ D P T+ Y K++ F +F+ Sbjct: 239 IQPLYIIHDEIVAGRLVPVLTDWELPPLTINLAYQSRRHQPAKIRVFNDFL 289 >gi|34496437|ref|NP_900652.1| transcription regulator protein [Chromobacterium violaceum ATCC 12472] gi|34102290|gb|AAQ58656.1| probable transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 295 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 8/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++R F VA GSF AAE+L LS++ +++ ++ LE +G++L +R R L+LTE G Sbjct: 4 FSEIRAFVCVAELGSFVAAAERLELSRAMVTKLVAALENRLGVRLMHRTTRKLSLTEAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +L+ L + +P G+LR++ + G L + F +P I++ Sbjct: 64 TYLAQAGSLLGELDELDALLSHGASEPVGRLRVSAPVSFGMRYLGRIIGGFHQRHPQIEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L+++ +D+ + D A+R+ + SSL+ RKL + A+P YL P + Sbjct: 124 ELNLNDRRVDLVEEGFDLALRVSN-LSDSSLVARKLAQVEDLLAASPDYLARRGTPQGPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 EL H + + + D+ D G ++ L+ N+ + V G GI L Sbjct: 183 ELAGHQCLLYALTAQPNVWDYQ---APDGTQGRVKVKGGLKANNGDVLTDAAVHGMGIVL 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +++++ + LV ++ + YP GK++ F ++ Sbjct: 240 QPRFLLEEELADGRLVPVLPGYHWHCLDLSVVYPVRRHVPGKVRVFVEYL 289 >gi|332532609|ref|ZP_08408486.1| putative transcriptional regulator with periplasmic binding domain [Pseudoalteromonas haloplanktis ANT/505] gi|332038030|gb|EGI74478.1| putative transcriptional regulator with periplasmic binding domain [Pseudoalteromonas haloplanktis ANT/505] Length = 312 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 139/272 (51%), Gaps = 6/272 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L + V GSF AAE ++ +S IS+QIS LE E+G++L R R +LT G+++ Sbjct: 6 RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +E+ L T + ++P G L+I ++ +G+ LQ L +F +P ++++L Sbjct: 66 IKKAAELRELLGETVRMAENYHLEPRGVLKITSSTLIGRRYLQPVLNDFQKRFPQVEVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +DI + D A R+ +P + SSLI RK+ + AAP +++ P +++EL Sbjct: 126 RLDDRLVDIVSEGFDLAFRVGEP-KDSSLIARKIARNRLLILAAPQFIETYGMPKTMEEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 K ++ + E ++ + + S + N S++ + G+ + P Sbjct: 185 AKLPAASYASNSIRV-EAIDYYDSKGERCEQKIKSVFRANDAESLLMKTLSGTTYFVAPA 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFT-VYFCYP 274 +I+ D LV ++ DV F+ +Y YP Sbjct: 244 FIIGDEIIQGKLVPLLTDVKLMEFSAMYAVYP 275 >gi|325578395|ref|ZP_08148530.1| LysR family transcriptional regulator [Haemophilus parainfluenzae ATCC 33392] gi|325160131|gb|EGC72260.1| LysR family transcriptional regulator [Haemophilus parainfluenzae ATCC 33392] Length = 299 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 138/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V + SFT AA Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISVFCKVIETQSFTQAANQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIVPTEAGML 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L + + G L I+ D G + NL +F+ L+P++ ++ Sbjct: 65 YYQRCQAILLDLSEADSSISNMATSLQGNLLISVPRDFGLLYISPNLPKFIELHPNLHVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K +D+ + D A+R+ +Q SSL+ RK+ + MH A+P YL+ PL+ + Sbjct: 125 IEFEDKRVDLVAEGYDLALRIGY-MQDSSLVARKISSSPMHFVASPSYLEARGTPLTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ H G L + +W +T I +I V N+ +++++ G GI+ Sbjct: 184 LEYHQ----GLLYKSSLNQVHWQSTKANQIQRYKIQSKVVSNNGMALLEMTKAGLGISNA 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + VKD + LV I+ + +Y YP K++AF F+ Sbjct: 240 PSFFVKDALASGELVEILSEYKQKPLDIYVVYPNRRHLPAKVRAFIEFL 288 >gi|260554583|ref|ZP_05826804.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260411125|gb|EEX04422.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 300 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 13/222 (5%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L VF +VA+ S + AA L + S ISR I+ LE ++GI+ F R R L Sbjct: 1 MSRQFDHLADVEVFLIVAKKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++++ G L L++FLL Sbjct: 61 SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTSYGHYRLPPLLEKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + +S+LI R L + A+P YLK Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLAT 210 P +++EL H I F G + P + E+ W+ T Sbjct: 180 GIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPT 221 >gi|238893200|ref|YP_002917934.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238545516|dbj|BAH61867.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 301 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 125/250 (50%), Gaps = 7/250 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++ +F V SGSF+ AAEQL + S++SR + LE+++G+ L R R L+LT Sbjct: 1 MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R V ++ + +L E+ P G LR+ + + L +K F YP Sbjct: 61 EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L+ I++ D AIR + SSL R L T + A+P Y+ P Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H+ + F + P + W ++ D + E + + NS ++ Q C+ G+ Sbjct: 180 QHPSDLKQHHCLGFTE--PVSLN--TWPVSCCDGQLLEIE-AAVSSNSGETLKQLCLTGN 234 Query: 240 GIALLPDYIV 249 GIA L DY+V Sbjct: 235 GIACLSDYMV 244 >gi|148549538|ref|YP_001269640.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148513596|gb|ABQ80456.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 302 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 16/298 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V GS + AA+ L LS+ +SR ++ LE VG +L R R L+LT G + Sbjct: 5 NAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTAAGQE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ Q +Q+ P G LRI+ + GQ L + ++ +PD++++ Sbjct: 65 TLPRCRQLLELAGDLQAAVQQPEDAPRGALRISVSTSFGQAQLVDAVAAYVRRFPDVKVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + D AIR + SLI R+L AAP YL P ++E Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQRVEE 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L HN +T FG + W A + + P + N +++ + + G+GI Sbjct: 184 LGLHNCLTHAYFGHSL--------WHFAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 A+LP + D LVR++ + + Y L++ +F+ + +D Sbjct: 236 AMLPTFQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293 >gi|167619553|ref|ZP_02388184.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257138727|ref|ZP_05586989.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 300 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPETLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|156936242|ref|YP_001440158.1| hypothetical protein ESA_04141 [Cronobacter sakazakii ATCC BAA-894] gi|156534496|gb|ABU79322.1| hypothetical protein ESA_04141 [Cronobacter sakazakii ATCC BAA-894] Length = 300 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 131/306 (42%), Gaps = 29/306 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L F VAR GSFT AA QL ++QS++S+ I+GLE + ++L R R ++LT Sbjct: 1 MKRNLNDLFSFVTVAREGSFTRAAAQLGVTQSALSQAIAGLENRLKLRLLTRTTRSISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + ++E L KP+GK+RI + LL L L YP Sbjct: 61 TAGERLLEAIGNRFDEIEAELDMLSALRDKPAGKVRITCDPHVLHALLLPKLTPILRDYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++ ++ +I D D +RL I + + M A A+P Y P Sbjct: 121 DIEMEFDANHGFRNIVADRFDAGVRLGGTIDKDMIAVPISPPMRMAAAASPDYFAAHPVP 180 Query: 181 LSIQELDKHNLITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQY 234 + +L HN I G L + W D P+ L N+ I+ Sbjct: 181 ETPHDLVAHNCINLRMTSGGGL-------YVWEFDGQDGPVNVRVEGQLIFNTAAHIVHA 233 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP-------------EALK 278 + G GIA LP+ D + LVR++E P Y YP EALK Sbjct: 234 ALDGLGIAFLPEGEFDDHFKDGKLVRVLEAWCAPFPGYYLYYPSRKQPSPAFSLVVEALK 293 Query: 279 NTGKLK 284 TG K Sbjct: 294 MTGNRK 299 >gi|124383352|ref|YP_001026627.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126448992|ref|YP_001080090.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|167003408|ref|ZP_02269194.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254358879|ref|ZP_04975152.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|124291372|gb|ABN00641.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126241862|gb|ABO04955.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|148028006|gb|EDK86027.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|243061048|gb|EES43234.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] Length = 299 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E + + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|317493843|ref|ZP_07952260.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918170|gb|EFV39512.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 297 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ LE L + + SG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 LELVVDNGFVDIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAENPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ + N + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEKEGKPLRVRVEGQVTFNLQAERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ V+D + L+++++D PSF Y+ Y Sbjct: 243 CIPEDRVQDYIKSGELIQVLQD-WCPSFPGYYLY 275 >gi|239815542|ref|YP_002944452.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239802119|gb|ACS19186.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 304 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 144/289 (49%), Gaps = 18/289 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G+FT AA+ L L + ++++QI LE+ + +KL R R +T+T G+ + Sbjct: 7 MRIFVRVVEAGTFTRAADSLALPKGTVTKQIQALESRLRVKLLNRTTRRVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + + + P+G+LRI + + ++ L F YP+IQ+ L Sbjct: 67 ERAARLLNDFDDIEASMTNAQANPTGRLRIDVGTSVARQIILPALATFCDRYPEIQVDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ T+H A+P Y+K P +++ Sbjct: 127 VSDRTVDLISDNVDCVIRAGE-LSDQSLVARRIGTLHFVTVASPAYVKRYGIPQHPNDIE 185 Query: 188 K-HNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-G 240 K H+++++ + P + ++ P R+S + N++++ VLG G Sbjct: 186 KRHHVVSYFSGTTRRIYPHEFRKGDEYIELNGPY---RVSVNESNAHMA----AVLGGFG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I+ ++ + + L+ ++ D ++ YP + K++AF Sbjct: 239 ISQCITFMAEPLLASGELIEVLPDWQREPLPIHVVYPPNRHLSAKVRAF 287 >gi|78062112|ref|YP_372020.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969997|gb|ABB11376.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 300 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 15/304 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D++ +R+F V G+FT AA L + S +SR++ LE ++G++L YR R +++TE Sbjct: 1 MDFESIRIFLRVVERGNFTAAATHLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + L + + P G LR+ +G L+ L EF YP + Sbjct: 61 GRDYYERCLRAEDILLDADRQARALRTAPEGMLRVLVPYSIGLFELEPALAEFRRRYPLV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI DN +D+ D A+R + SS I R L A+P YL P + Sbjct: 121 QLVLIYDNNPLDLVEHGFDVALRA-GVLTDSSYIARSLGWSQAKLAASPAYLDRVGRPTT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Q+L +H+L+ G P A D P+ L N +++++ G G Sbjct: 180 PQDLAQHDLLLVGRDAPGLTLRLTNAAGEVADVPVR----PVLITNESVTVLRQAASGGG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKA 294 IAL+ + L R +++ P + ++ YP K++AF F+ Sbjct: 236 IALVSTHYTAR--RLERNELEIVLPDWHRTDDVELHVLYPRRATLDSKVRAFVEFLAEVF 293 Query: 295 RDWK 298 DW+ Sbjct: 294 DDWR 297 >gi|300705531|ref|YP_003747134.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299073195|emb|CBJ44553.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 312 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 7/295 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF AA+ L +S + ++R ++ LE +G +L R R L+LT+ G Sbjct: 7 MRVFAKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V ++ + S G LRI + G ++L L F LYP++ + Sbjct: 67 QRCQQVLLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI D D I + + S L+ R++++ M A P YL+ P +++ Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMIMAATPAYLRQHTTPQRAEDIT 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246 H +I P+ ++ A + I P L V S +M VL GIA+L Sbjct: 187 DHRVIAMWH--PQLRHEWEMSAPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 Y+ + ++ LVR++ P ++ YP K++ F +++ +A + K Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298 >gi|331661668|ref|ZP_08362591.1| LysR-family transcriptional regulator [Escherichia coli TA143] gi|331060090|gb|EGI32054.1| LysR-family transcriptional regulator [Escherichia coli TA143] Length = 297 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPQTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|293607231|ref|ZP_06689572.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814323|gb|EFF73463.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 301 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 136/290 (46%), Gaps = 12/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L++ +AR+G + AA QL ++ +++S++++ +E +G++LF R R L+LT +G Sbjct: 6 ELQLVVELARAGGMSAAARQLDVTPAAVSKRLAQIEARLGVRLFNRSTRRLSLTAEGEDY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++E + P G+L++ + G++ + + EF YPD+ +QL Sbjct: 66 LESARRILAEIEDLDQRIASRQDSPRGRLKVNAPLGFGRSYIAPAIAEFSQQYPDVMLQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D D D A+R + + LI RK+ A+P YLK P++ +L Sbjct: 126 QLTDSPADFVQDAFDVAVRF-GDLPDTRLIARKIAPNRRLVCASPGYLKTHGVPVTPHDL 184 Query: 187 DKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +H I + ED W T R ++ L N + + + G GI Sbjct: 185 TRHQCIVL-----RQNEDAYSLWRFTRGRRSETVKVRGALSSNDGEVTLTWGLAGLGILQ 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + LVR++ED P +Y +PE + K++ F +F+ Sbjct: 240 RAEWDLARYLRSGRLVRVLEDYALPQADIYAVFPERHHLSAKVRVFVDFL 289 >gi|293413543|ref|ZP_06656192.1| lysR family transcriptional regulator [Escherichia coli B185] gi|291433601|gb|EFF06574.1| lysR family transcriptional regulator [Escherichia coli B185] Length = 297 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 17/279 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQQNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANSAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVL 237 EL H I +P ++W +R E + ++V+ L+ + + Sbjct: 185 HELQNHRCINM--RLPTAGGLYHW--EFER---EGKTLRVKVDGQLTCSPLPERIDAALS 237 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G GIA +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 238 GFGIACVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|312115940|ref|YP_004013536.1| LysR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311221069|gb|ADP72437.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii ATCC 17100] Length = 320 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 18/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V +GS + A +L LS + +S++IS LET +G +LF+R R L LTE G + Sbjct: 7 LEIFARVVTAGSMSAAGRELDLSPAVVSKRISHLETRLGTRLFHRTTRQLQLTETGRGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + + + G L+I + + L +FL YPD+ I++I Sbjct: 67 ERVVQILATVQEAEAFVSSGHQRAGGSLKITAPTGFSRLHIAPYLGQFLKQYPDLSIEII 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +DI + D AIR+ + + SSL+ +KL A P YLK P ++ +L Sbjct: 127 ATDMMLDIVREGIDVAIRISE-LDDSSLVAKKLAPCRRLFVATPEYLKEHGTPKTLADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 KH ++ + W V P G+ + ++ NS + Q V GIAL Sbjct: 186 KHKIL--------VENNVTW--RVQGPEGDVSLKLSGEIKTNSSEIVHQALVTNCGIALR 235 Query: 245 PDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ + LV ++ P VY YP+ +L+ F +F+ Sbjct: 236 ATWQIREELLSKKLVHVLPQYREAPGVAVYAVYPDKQYIPTRLRVFVDFL 285 >gi|260462526|ref|ZP_05810733.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259031722|gb|EEW32991.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 313 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 138/289 (47%), Gaps = 10/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F A GSF A L +S S++ + ++ LE E+G++L R R + LTE+G Sbjct: 23 NGLLAFARTAELGSFIAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRVGLTEEGRL 82 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + L + P G+LRI+T I + +LL L EF+ YP+I++ Sbjct: 83 FDERVRRILDDIDDAEAMLSRTRETPRGRLRISTPI-VTYHLLLPVLSEFMARYPEIELD 141 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ +D+ + D AIR + S L+ R + M AAP YL P + Sbjct: 142 IDFNDRVVDVIEEGIDVAIR-SGELPDSRLVSRPVAPFRMLLCAAPSYLDRHGTPSVPAD 200 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H I F L + D W T EP+I S L N+ ++ + G GIA + Sbjct: 201 LIRHFGINFRFLNSGRLLD--WPFTTGS--AEPQIRSMLTCNNMEALKGATLAGLGIACM 256 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD++V++ + L +++D + +P + K++ F +F+ Sbjct: 257 PDFLVREALHDSKLRIVLDDHVDGRGQFRMLWPSNRHLSPKVRVFVDFL 305 >gi|218462259|ref|ZP_03502350.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Kim 5] Length = 293 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 138/291 (47%), Gaps = 13/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + +G +R+ G + L + + +P++ Sbjct: 61 GGIFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L +P Q L+ KL + YA+ YL P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYALGLYASRDYLARNGRPGD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239 + L H I + +ED + A+++ GE S L+ ++ + + G+ Sbjct: 180 VDALRAHPRIGY-------VEDLIFTASLNFS-GEVMRSWDAGLKFSTAIGQTEAVRSGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +L DYI + P L RI+ + I+ + Y E ++ ++++ +F+ Sbjct: 232 GIGILHDYIARQYPELQRILPE-ISIRRAYWTTYHETARDLVRVRSVVDFL 281 >gi|66044803|ref|YP_234644.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63255510|gb|AAY36606.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 309 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 15/288 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA GSFT AAE+L+L+ S+IS+ I+ LE + +LF R R L+LTE G +R Sbjct: 12 VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE +I L + +P GK+RI G+ + + +F+ +P +Q + Sbjct: 72 CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188 ++ +D + D +R+ + I + + A+P Y+K +P ++ +LD Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAIAHQFFGTQKLIFCASPEYVKQYGQPKTVSDLDD 191 Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I +G IP + ++R I P I+ V + + G GIA L Sbjct: 192 HQCIGYGQNDGMAIPWYFKGRQ-PGDMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247 Query: 245 PDYIVK---DNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286 P ++V+ ++ LV ++ D+ T P V+ EAL L A+ Sbjct: 248 PTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295 >gi|170738153|ref|YP_001779413.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820341|gb|ACA94923.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 300 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +G+FT AA L L+ +++S I LE E+ +KLF R RG++LTE G + Sbjct: 4 LHVFMTVATAGNFTRAAAGLGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 63 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 R T Y ++ + EL+++ +P+G LR+ T + L + L+ L F YP +++++ Sbjct: 64 RQTEPAYRQVMQARDELKDARSEPNGLLRV-TALPLARLLVIAPVLATFRERYPKVRLEI 122 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 DN+ +DI+ D D IRL +Q + R + A+P YL P SI L Sbjct: 123 HYDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAAL 182 Query: 187 DKHNLITF 194 +H I F Sbjct: 183 GRHACIRF 190 >gi|168799778|ref|ZP_02824785.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|195937785|ref|ZP_03083167.1| putative transcriptional regulator [Escherichia coli O157:H7 str. EC4024] gi|189377865|gb|EDU96281.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] Length = 307 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++ +++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 14 FALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 74 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 133 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 134 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 187 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 243 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 244 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 301 >gi|186474924|ref|YP_001856394.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184191383|gb|ACC69348.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 312 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 147/289 (50%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF A+E++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRHVVEVGSFVGASEKMDMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+V +L+ + + +SV P G+LR+++ G + + ++ +P + + + Sbjct: 67 ERLSQVLSELDEAEQAVGAASVVPQGRLRVSSLSAFGLRHVMSAVADYATQHPQVTVDIT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R++ T H+ A+P Y++ P S +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQVATAHLVLCASPEYIERHGAPKSAADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 +HN+I + + +A + G ++S + ++L + VL G+ +ALL Sbjct: 187 TRHNIIQY-----SGVSALELVAGANAESGRVKLSGNLIVNHLEAQRVVVLQGAALALLG 241 Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ++ D+ +V ++ D + P ++ Y + K+++F +FI Sbjct: 242 TEVIGDDLAAGRVVPLLIDELPPRELPIHVVYASRRHLSAKVRSFVDFI 290 >gi|288936001|ref|YP_003440060.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288890710|gb|ADC59028.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 301 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 2/191 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L+ F V +GSFT AA+ L + +++S+ I LE +G+ L R R +T+T +G Sbjct: 4 FSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTPEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + LE + KP G LRIA ++L L EF+ +PDI+I Sbjct: 64 EYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLAEFMTAWPDIRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +K D+ DCAIR P++ S+LI RK+ + A P YL+ C P S Sbjct: 124 DLQVADKPADLISGNIDCAIR-GGPMEDSTLIARKIGEATLVTCAPPGYLQRCGTPASPD 182 Query: 185 EL-DKHNLITF 194 EL H LI++ Sbjct: 183 ELHHGHQLISY 193 >gi|187776100|ref|ZP_02800405.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|188024809|ref|ZP_02774174.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4113] gi|189010526|ref|ZP_02807660.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|189402200|ref|ZP_02780862.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|189403312|ref|ZP_02794663.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|189405144|ref|ZP_02813580.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|208806663|ref|ZP_03249000.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|208815417|ref|ZP_03256596.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208822915|ref|ZP_03263233.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209396927|ref|YP_002268923.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|187769114|gb|EDU32958.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|188016471|gb|EDU54593.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4113] gi|188999905|gb|EDU68891.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|189356867|gb|EDU75286.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|189361300|gb|EDU79719.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|189371629|gb|EDU90045.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|208726464|gb|EDZ76065.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|208732065|gb|EDZ80753.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208737108|gb|EDZ84792.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209158327|gb|ACI35760.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|326347251|gb|EGD70977.1| Putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. 1125] Length = 308 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++ +++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|170704271|ref|ZP_02894826.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170130819|gb|EDS99591.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 307 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 7/291 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AAE L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 6 DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G L L FL YP + Sbjct: 66 ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + SSL R+L + A+P YL P Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRHGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++++H +T+ +L P+ N + D +G ++ N+ I + G G+A Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPASGED--VGVSVHGRIRTNNADVIAPALLTGHGLA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P+++ D + L +M + V P + ++ +F+ Sbjct: 243 LQPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGMLRAARVTVLLDFL 293 >gi|292491695|ref|YP_003527134.1| LysR family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291580290|gb|ADE14747.1| LysR substrate-binding protein [Nitrosococcus halophilus Nc4] Length = 305 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 7/293 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F V GSF+ AA ++ S+S++S+ ++ LE +G +L R R L+LTE G Sbjct: 3 DLNLMAIFARVVEVGSFSEAARRMDTSRSAVSKAVAKLEKSLGARLLNRSTRHLSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + + E + + +P G LR++ ++ G + L +F+ YP+I+ Sbjct: 63 AALVEHAARILEEAEQAERVVSSLHAEPRGMLRVSVSVAFGTLHIAPALADFVARYPEIK 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + + ++ ID++ + D IR+ +L+ RKL +H A P Y P + Sbjct: 123 IDMAITDRPIDLAEEGYDVIIRVTGE-PDLNLVARKLAPVHRKLCATPEYFLRRGIPRTP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L H+ + D + + + I P L++N ++ Q + G GIAL Sbjct: 182 EDLVNHDCL---DYTLSGEQGYWHFTGPEGKIAVPVSGPLRINDDDALSQAVLGGLGIAL 238 Query: 244 LPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LP + V KD L ++ + + +Y Y K++AF +F+ + Sbjct: 239 LPTFTVGKDLQEGRLQAVLSEYLPVERYIYAMYLPTRHLPAKIRAFIDFLLAR 291 >gi|115358894|ref|YP_776032.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284182|gb|ABI89698.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 299 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 136/290 (46%), Gaps = 14/290 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR +F AA++L ++Q ++++Q+ LE V ++LF R RGL LT +G + Sbjct: 14 NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVAVQLFRRLPRGLALTREGLE 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S V L+ +P+ L ++TT L L +F L+PDI+++ Sbjct: 74 YF---SSVQRALQIISDATDALGERPT-VLAVSTTPSFASKWLIPRLADFGRLHPDIEVR 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIRL KP + L L + + A A+P L + + + Sbjct: 130 VIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDSGPPIRTPAD 189 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P+ +E D P PR S S L+I V G GIAL Sbjct: 190 LSTHALLHDAHDLWPEFIEKLGGKGRAD-PTKGPRFS----QSLLAI-DAAVAGQGIALT 243 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + +V+ + L R+ + S Y +P+A ++ L+A R ++F Sbjct: 244 SEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLF 293 >gi|239996656|ref|ZP_04717180.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 327 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 145/289 (50%), Gaps = 8/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V GSF+ A++L+L+ S +S++I+ LE+++ ++L YR R L LT+ G Sbjct: 31 DDIILFVNVVDEGSFSKVAQKLNLTNSVVSKRIARLESDLNVQLLYRSTRKLNLTDAGRT 90 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ ++ + + S + GK+RI + +L + EF L+ ++ ++ Sbjct: 91 LYNKARIANLAIQDAEDAVSGYSDEVRGKIRITMPNVSAKLVLNRAIAEFCNLHEEVDVE 150 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + N+ +I + D AIR ++ SSLI ++L+ A+P YLKN P + Sbjct: 151 LAITNRVTNIIEEGYDLAIRTAH-LEDSSLIAKRLIDSKWIVCASPTYLKNKSRPNHPDD 209 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +HN + + DF W ++ + +I +Q N+ ++ Q + G G+A L Sbjct: 210 LTEHNCLIYK--YDSTGPDF-WPFHIEGELHNVQIGGRIQSNNLDALRQAAIAGVGVAFL 266 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V ++ L ++ + +T + +Y YP + + KLK N++ Sbjct: 267 PKALVHEDIEDGALSPLLAEYVTKTMGIYAVYPRSRQPDKKLKLLVNYL 315 >gi|325291697|ref|YP_004277561.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gi|325059550|gb|ADY63241.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 305 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 21/299 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L V VA SF AA +L ++ S++S +S LE +G++L +R R ++ TE+G +L Sbjct: 17 QLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGRRL 76 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +++ L E +P+G LRI ++L+ L EFL LYPDI +++ Sbjct: 77 LETLGPALAEIDAVIDTLAEHGGRPAGPLRITLPRLAAEDLIMPRLGEFLRLYPDISLEI 136 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 D++ DI D +RL + +++ + + AP Y + P ++L Sbjct: 137 STDDRFEDIVAKGFDAGLRLGENLEADMIAVKASGPWRGAIVGAPTYFEENLPPREPRDL 196 Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLG 238 +H I + G L + W D G P + +Q LS I + + G Sbjct: 197 MRHRCILRRFSSGLL-------YRWELEKD---GRPLVVDVQGPLILSDQSLIRRAAIDG 246 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 +G+A + + V D+ LVR++ED P Y YP + L+AF +F + Sbjct: 247 AGLAFVFEQRVDDDIKEGRLVRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG 305 >gi|163743792|ref|ZP_02151165.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161382941|gb|EDQ07337.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] Length = 292 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 138/298 (46%), Gaps = 14/298 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R + +E +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHVDAIEARLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L+ SG+L + T++ LL L EF +P++ Sbjct: 63 QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSSMSTLLVPALTEFQRRHPELV 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+ + ++ + A AIR P + + + + YA+ YL+ + Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGSPPEQPDNVVQPFMRQQHGLYASASYLERFGPLKGL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGS 239 ++ H I C +D + A R + E +S VN+ +S+ + + G+ Sbjct: 182 DDMANHRFI--------CNDDIDSRAPYSRWLRAHAPESALSFRCVNA-VSMQEALLAGA 232 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 GI L + +P L +IME + + ++ L T K+++F +F+ +A+ W Sbjct: 233 GIGFLTRWEAARHPGLTQIMEPLPEWAGELWLVTHVDLHRTTKVQSFLSFLKAEAKAW 290 >gi|115351324|ref|YP_773163.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281312|gb|ABI86829.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 324 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 7/291 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AAE L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 23 DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 82 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G L L FL YP + Sbjct: 83 ELLRDRAIRLLADAELIESEACAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 142 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + SSL R+L + A+P YL+ P Sbjct: 143 IDLVLTDNIVDIVSGGFDIAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLERRGRPTHP 201 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L++H +T+ +L P+ N + D +G ++ N+ I + G G+A Sbjct: 202 RDLEQHVCLTYTNLPTPEHWRFRNPASGED--VGVSVQGRIRTNNADVIAPALLAGHGLA 259 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P+++ D + L +M + V P + ++ F+ Sbjct: 260 LQPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGMLRAARVTVLLEFL 310 >gi|323498510|ref|ZP_08103503.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323316399|gb|EGA69417.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 296 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 114/204 (55%), Gaps = 3/204 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F A+ GSF+ A +L +S +++S+ ++ LE + G++LF+R+ R +LTE G+ L Sbjct: 5 QLPLFIAAAQEGSFSAAGRKLGISAAAVSKGVAALEKQTGVRLFHRNTRQFSLTEDGANL 64 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ S + +LE + L E + +GKLR+ G+ + ++ +FL L+P+I++ L Sbjct: 65 YQKVSPLLLELEQSIDGLTEQNRSAAGKLRVNIPDSFGRRFVMPHIAKFLRLHPNIELDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +D+ + D ++ R + S L+ R + + +A Y++ +P +I+EL Sbjct: 125 VLSDRVLDVVDEGFDVSVGNRIN-EDSRLVARPIYDMQSGIFAHRDYVEQFGQPKTIEEL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLAT 210 HN I + L +NW T Sbjct: 184 SHHNCIIYRPL--SSGRTYNWALT 205 >gi|87121801|ref|ZP_01077687.1| putative transcription regulator protein [Marinomonas sp. MED121] gi|86162830|gb|EAQ64109.1| putative transcription regulator protein [Marinomonas sp. MED121] Length = 300 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 12/297 (4%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M + +K+R VF V GSF AAE L+LS++++S+ I+ LE E+ L R R L Sbjct: 1 MVYKMNKIRALTVFRRVVELGSFKGAAEDLNLSKAAVSKNINELEEELQSPLINRTTRKL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +TE G ++ V L+ + ES G L+I+ + LG + + +F+ Sbjct: 61 HITESGRLYYQQVCHVLDCLKNADQSIIESLNTLKGTLKISVPMSLGIIEINPIIFDFMA 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +++++++K +D+ D +IR + SSL RKL + A+P YL Sbjct: 121 EHPDLHVEVVMNDKYVDLIEQEIDISIRGGGVLNDSSLRSRKLTDMKRVLCASPDYLAQA 180 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYC 235 + S +L HN + + + WL + + E ++ N+ L + Q Sbjct: 181 SKLNSPDDLVDHNCLIYS----FSLSARRWLFKYNDQVKEVELTQGSFIANNGLVLKQAA 236 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LG GI LLPD V + LV ++ ++Y YP + + K++AF +F Sbjct: 237 CLGHGIVLLPDLFVNNEIEQGQLVEVLPQWSADKHSLYLVYPFHKEKSHKIRAFIDF 293 >gi|220919656|ref|YP_002494959.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] gi|219952076|gb|ACL62467.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 310 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 15/299 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR+GSFT AA QL +SQ ++S+ + GLE +G++L R R + TE G + Sbjct: 7 NDLFAFIAVARTGSFTRAAAQLGVSQPALSQTVRGLEARLGVRLLTRTTRSVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + ++E L E KP+G +RI T +L LK L YPDI+++ Sbjct: 67 LLKAVGPRFAEIEAGLAMLAELRGKPAGTVRITATEHAANTVLWPTLKRVLPEYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D DI + D +R + R + M A AAP Y +P ++ Sbjct: 127 IAVDYGLTDIVAERFDAGVRYGGTVAKDMTAVRIGPDVRMAAVAAPAYFAGRSKPERPED 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H+ I +P + W ++ E R+ L N+ I+ + G GIA Sbjct: 187 LTIHDCINL--RLPTRGGLYAW--EFEKDGRELRVWVEGQLVFNTVTLILLAALDGFGIA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 LP+ V+ D LVR++ED P F+ Y Y + + + A + ++A WK Sbjct: 243 YLPEDGVQAHLDTGALVRVLEDWCEP-FSGYHIYYPSRRQPAQALA----VLVEALRWK 296 >gi|145298143|ref|YP_001140984.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850915|gb|ABO89236.1| transcriptional regulator, LysR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 299 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 144/290 (49%), Gaps = 10/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 LRVF V GS + A E+L +S++ ++R ++ LE +G +L +R R L+LT G + L Sbjct: 7 LRVFVSVVEQGSLSGAGEKLEMSRAMVTRYLAELEQWMGARLLHRTTRRLSLTGPGEEAL 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R + + E QI ++ P G+LRI ++ L + LL G ++L Y I + Sbjct: 67 NRARAMLALGEEMEQIAIRGDEA-PKGQLRITSSYSLSEALLVGAANDYLAQYAGTAIDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +++ + D AIR+ + +L+ R+L T H A+P YL P +Q+L Sbjct: 126 LLLDRTVNLVEERIDLAIRITNDL-DPNLVARRLGTCHSVVCASPAYLARHPTPQKVQDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN +T+ K + +F A P P L N +++ + G+GI++ P Sbjct: 185 ALHNCLTY-TYFGKSLWEFQGPAG---PESVPVSGNLSANISNLLLEATLGGAGISMQPR 240 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 Y + ++ LV ++ VY Y + + L++F +F+ ++ Sbjct: 241 YSAQPHLESGALVPLLSQWQPKRLGVYGVYGTRKQMSPLLRSFLDFLVVR 290 >gi|52842501|ref|YP_096300.1| LysR family transcriptional regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629612|gb|AAU28353.1| transcriptional regulator, LysR family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 306 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 9/297 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L FY+V SFT A + +++S ISR+IS LE+ +G++L +R R L LT+ G Sbjct: 4 DLNDLYFFYLVVEQRSFTKAGRSIGITKSKISRRISELESRLGVRLLHRSTRKLALTDIG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + ++ Q ++ KP G++R+ Q+ + F+ Y ++ Sbjct: 64 QIFYQHCKAMVDEAQSAQEAIELVQSKPRGRIRVTCPALFAQSTFTDIITRFMQQYQEVT 123 Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L ++ +D+ + D AIR + + S+L+ RKL A+P YL + P + Sbjct: 124 IVLNATDRPVDLFQEGFDVAIRFQANTFEDSTLVVRKLGLSFSSLIASPTYLNHHGTPQT 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L H F + M F R I L+ N +L + Q + GI Sbjct: 184 PQDLVNH--ACFAKTRNEGMSQFLLTHNDGRQISVHFQPILESNEWLVLKQAALSHLGIT 241 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 ++P I + D+ LV I+ + P ++Y YP G + A R+FI A + Sbjct: 242 MMPQEICRKEIDSGLLVPILTEWSLPKASLYIIYP---SRRGLIPAIRSFIDFVAEE 295 >gi|26988125|ref|NP_743550.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24982855|gb|AAN67014.1|AE016330_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 302 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 16/298 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V GS + AA+ L LS+ +SR ++ LE VG +L R R L+LT G + Sbjct: 5 NAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTAAGQE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ Q +Q+ P G LRI+ + GQ L + ++ +PD++++ Sbjct: 65 TLPRCRQLLELAGDLQAAVQQPEDAPRGALRISVSTSFGQAQLVDAVAAYVRRFPDVKVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + D AIR + SLI R+L AAP YL P ++E Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQRVEE 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L HN +T FG + W A + + P + N +++ + + G+GI Sbjct: 184 LSLHNCLTHAYFGHSL--------WHFAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +LP Y D LVR++ + + Y L++ +F+ + +D Sbjct: 236 TMLPTYQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293 >gi|170683135|ref|YP_001742432.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5] gi|170520853|gb|ACB19031.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5] Length = 297 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNSTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|126738045|ref|ZP_01753766.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] gi|126720542|gb|EBA17247.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] Length = 292 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 144/298 (48%), Gaps = 14/298 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R I +E +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L+ + SG+L + T++ +LL L EF ++P + Sbjct: 63 QDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMSHLLVPVLSEFQQMHPGLV 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ + + + A A+R P Q +++Q + + +AAP Y++ Sbjct: 122 IRYLTGERLFRLEYGEAHVALRAGNAPDQPDNVVQ-PFLKHRIGLFAAPSYVERRGMLKG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +++L H ++ + + FN WL T D I + + ++I + + G+ Sbjct: 181 LEDLKNHQFVSADNENSRA--PFNKWLREHTADETI------IFRCSDGVAIREAIMAGA 232 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 GI + + P+LV++M+ +++ L T K+++F +F+ +A++W Sbjct: 233 GIGFMSMWEAARRPDLVKMMDPQKEWEGSIWLVTHVDLHRTNKVQSFLSFLKERAKEW 290 >gi|238799135|ref|ZP_04642589.1| Transcriptional regulatory protein [Yersinia mollaretii ATCC 43969] gi|238717006|gb|EEQ08868.1| Transcriptional regulatory protein [Yersinia mollaretii ATCC 43969] Length = 297 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ LE L + + SG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 LELVVDNGFVDIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAANPVPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ + N + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEKEGKPLRVRVEGQVTFNQQAERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ V+D + L+++++D PSF Y+ Y Sbjct: 243 CIPEDRVQDYIKSGELIQVLQD-WCPSFPGYYLY 275 >gi|294624608|ref|ZP_06703281.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665268|ref|ZP_06730562.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601081|gb|EFF45145.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604945|gb|EFF48302.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 369 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 17/297 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LH+S++S ++ + LE + +KL R R + +T G+ Sbjct: 65 FDAMQAFARVVETGSFTKAAEHLHMSRASATQLVQQLEARLRVKLLNRTTRRVQVTADGA 124 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++ P G+LR+ L + +L L F YP+IQ+ Sbjct: 125 AYYERVLRLLADMDDAETSLSVAATSPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 184 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR I SL+ R + + YAAP YL+ P Sbjct: 185 DMGVSDRRVDLIGENVDCVIR-GGAITDQSLMARHVGDLQAGVYAAPDYLQRLGAPTHPT 243 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ +H + F +P M+ + V G ++ N+YL+ + Sbjct: 244 ELENTRHRCVGFMRWGSSTTVPYVMQRGDEAVRVH---GRHVVAADDGNAYLAA---GLA 297 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ LP Y+ + LV I +D + + +P + KL+ F +++ Sbjct: 298 GMGVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVI 354 >gi|254295506|ref|YP_003061528.1| transcriptional regulator, LysR family [Hirschia baltica ATCC 49814] gi|254044037|gb|ACT60831.1| transcriptional regulator, LysR family [Hirschia baltica ATCC 49814] Length = 299 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 127/264 (48%), Gaps = 18/264 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+K R F V A GS + AA L ++Q ++SRQ+S E E+G+ LF R +GL LT Sbjct: 6 IKFDWNKARAFLVTAEEGSLSAAARALDMNQPTLSRQVSSFEEELGVSLFERVGKGLELT 65 Query: 61 EQGSKL---HRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114 G +L R E + T QI+ E V S ++T I L + + Sbjct: 66 PHGLQLVDHVRAMGEAAVQFSLTATGQIDQIEGVVAISASDAVSTYI------LPDMMVD 119 Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 P + ++++ N D+ AD A+R +PI+ LI RK+ ++ YA P YL Sbjct: 120 IRRAEPGVILEIVATNTLSDLRRREADIAVRHAQPIE-PDLIGRKVRCVNCWLYATPDYL 178 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 + P S+ +L+ + I FGD + ++ N + P ++SC +++ Sbjct: 179 ASIGAPASLADLNNADFIGFGDNT-QLLQGLNAIGIPASP-DSFKLSCENGTVSWELVRK 236 Query: 235 CVLGSGIALLPDYIVKDNPNLVRI 258 G GI ++ + I + P L+R+ Sbjct: 237 ---GLGIGIITEDIALNFPELIRV 257 >gi|229526399|ref|ZP_04415803.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229336557|gb|EEO01575.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] Length = 301 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 TDHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|207723833|ref|YP_002254231.1| hypothetical protein RSMK01181 [Ralstonia solanacearum MolK2] gi|206589038|emb|CAQ36000.1| hypothetical protein RSMK01181 [Ralstonia solanacearum MolK2] Length = 328 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 11/275 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF +G F AAE+L LS+S++ + I+ LET +G++LF+R R LTE G Sbjct: 2 DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + L+ + +G+LR+ + G+ + L +F +P ++++ Sbjct: 62 YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLELE 121 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D IR +++ L R L T AAP YLK EP +I+ Sbjct: 122 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKAHGEPDTIET 181 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H+++ G P + + T RP R L+V + V G GIA Sbjct: 182 LATHDVLIHWRTGHPYPWLLPGADGRLTEVRPASRLRFDDLEVTA-----DAAVAGMGIA 236 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LP ++V+D LV + E S + +P Sbjct: 237 WLPHWLVRDRIQAGALVALWEKRPAASMDSHAIWP 271 >gi|325928961|ref|ZP_08190122.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|325540650|gb|EGD12231.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 309 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 137/297 (46%), Gaps = 17/297 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE L +S++S+++ + LE + +KL R R + +T G+ Sbjct: 5 FDAMQAFARVVETGSFTKAAEHLDMSRASVTQLVQQLEARLRVKLLNRTTRRVQVTADGA 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + L ++ P G+LR+ L + +L L F YP+IQ+ Sbjct: 65 AYYERVLRLLADLDDAETSLSVAASLPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR I SLI R + + YAAP YL+ P Sbjct: 125 DMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPTHPT 183 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ +H + F +P M+ N V G ++ N+YL+ + Sbjct: 184 ELENTRHRCVGFMRWGSSTTVPYVMQRGNEAVRVH---GRHVVAADDGNAYLAA---GLA 237 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ LP Y+ + LV I +D + + +P + KL+ F +++ Sbjct: 238 GMGVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVI 294 >gi|91790042|ref|YP_550994.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gi|91699267|gb|ABE46096.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 322 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 9/291 (3%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR F V V GSFT AA+ L S ++++R I+ LE +G +L R +R L+LTE Sbjct: 2 DRLRAFEVFASVVSRGSFTRAADALDTSPANVTRYINELEAHLGTRLLNRSSRKLSLTES 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + + ++ + ++++P G+LRI + G L F+ YP++ Sbjct: 62 GEALYERSKSILEEVAEAEALASSATLQPRGRLRINAPVSFGIRHLAPLWPLFMQAYPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +DI + D AIR+ + S+S RKL T A+P YLK +P Sbjct: 122 ELDIALSDRVVDIVEEGYDLAIRISR-AGSASHAARKLGTSRNIVCASPAYLKAHGQPEK 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H + G +++++ RP + N+ + + + G G+ Sbjct: 181 PADLVGHRCL--GYTYAATANEWHFVDDAGRPHMVKVNYVMHANNGDTAREAAIAGQGVI 238 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +++ D+ LV +M P V YP + K++ +F+ Sbjct: 239 WQPAFLIGDDLKAGRLVALMPGYRMPDIDVLAVYPSRRHLSAKVRVMVDFL 289 >gi|325523181|gb|EGD01565.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 300 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 15/304 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+D +R+F V GSFT AA L + S +SR++ LE ++G++L YR R +++TE Sbjct: 1 MDFDSIRIFLRVVERGSFTAAATLLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + L + + P G LR+ +G L+ L EF YP + Sbjct: 61 GRDYYERCLRAEEILLDADRQARALRTAPEGTLRVLVPYSIGLFELEPALAEFRRRYPLV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI DN +D+ D A+R + SS + R L A+P YL P + Sbjct: 121 QLVLIYDNNPLDLVEHGFDVALRA-GVLTDSSYVARSLGWSQAKLAASPAYLDRVGRPCT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++L +H+L+ G P +A D P+ L N +++++ G G Sbjct: 180 PRDLAQHDLLLVGRDAPGLTLRLTNVAGEVADVPVR----PVLITNESVTVLRQAASGGG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKA 294 IAL+ + L R +++ P + ++ YP K++AF +F+ Sbjct: 236 IALISTHYT--GRRLERNELEIVLPDWHRSDDVELHVLYPRRATLDSKVRAFVDFLAEVF 293 Query: 295 RDWK 298 W+ Sbjct: 294 TGWR 297 >gi|83945779|ref|ZP_00958122.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83850782|gb|EAP88644.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 295 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 134/286 (46%), Gaps = 15/286 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V F+ AA L LS +S+S+ I LE ++G +L R R L LT+ G + Sbjct: 7 LEIFRKVVDRNGFSAAARDLGLSNASVSKAIKELEAQLGAQLIVRTTRSLHLTDVGQAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V L+ ++ + P G+LR+A + LG LQ L F YPDI + L Sbjct: 67 QRVGGVLDALDDADELVRSETASPRGRLRLAAPLSLGLVALQEALLSFCKTYPDILLDLH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + D AIR + SSL RKL+++ A+P YL E ++L Sbjct: 127 MSDAVVDVVGEGFDAAIR-GGNLPDSSLKARKLMSLDRVVVASPDYLARSVELKRPEDLS 185 Query: 188 KHNLITF--GDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H+ + + + C+ D + RP L+VNS +++ V G GIA+ Sbjct: 186 RHDALIYSGAEHSETCILKRDGEAVQVQLRP-------RLRVNSSIAVKSAAVEGLGIAV 238 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P V+ + LV+++ D +Y YPE + + KL+ Sbjct: 239 TPHVYVRQALEEGALVQLLPDWSIEGRALYVVYPEQREVSRKLRVL 284 >gi|300977336|ref|ZP_07173827.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|300409861|gb|EFJ93399.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] Length = 315 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 23 NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 83 ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P+ +V+ ++ L++++++ P+F Y+ Y Sbjct: 261 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 293 >gi|222081165|ref|YP_002540528.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725844|gb|ACM28933.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 299 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 10/273 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +VA SFT AA +L SQS++S I LET VG++L R R L TE G +L Sbjct: 9 LNAFLIVAEERSFTRAAAKLGTSQSALSHTIRRLETRVGVRLLTRTTRSLAPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + T L E KP+G +RI T+ +L L++FL YPDI ++L Sbjct: 69 ATLKPALDSIGTELSSLGELREKPAGTIRITTSEHAANTVLWPALEKFLPNYPDIHVELS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ DI + D +RL + + + R I M +P Y + + PL Q+L Sbjct: 129 IDSGLTDIVTERFDAGVRLGEALAKDMIATRISPDIRMIVVGSPAYFEQRKIPLVPQDLA 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA-L 243 +H I + + W +++ E R+ L N+ I++ G G+A + Sbjct: 189 EHQCINL--RLRSAGGLYAW--ELEKDGREVRVRVEGQLAFNNVEMIVRAATAGFGLAFV 244 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274 + D++ K + L+ ++ED +P + YP Sbjct: 245 MEDHVRKHLADGRLLCVLEDWCSPFPGYHLYYP 277 >gi|13472321|ref|NP_103888.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023067|dbj|BAB49674.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 304 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 134/288 (46%), Gaps = 11/288 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + F +GSFT A E+LH+++S+I + ++ LE +G++L R R L T + Sbjct: 4 IDLQGIVAFVQAVEAGSFTGAGERLHVTKSAIGKSVAQLEQRLGVRLLNRTTRSLRPTSE 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++E Q L PSG+LR+ + G+ + L E +P++ Sbjct: 64 GVSYYEACVRALAEIEAAQSLLAARRHVPSGRLRVDVPLAFGRRCVAPVLFEISRKFPEL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ +++ +D+ + D AIR+ + S SL R++ AAP YL+ P S Sbjct: 124 TVEISFNDRRVDLIEEGIDLAIRMGELDDSLSLAARRIYAQRSAICAAPAYLEEHGRPRS 183 Query: 183 IQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +++L H++I +G + P+ + + T P L + ++ + G Sbjct: 184 VEDLAHHSVIGYGREGVVSPRVIRHGDGRQTTFAPKAR-----LVLGHGEPMLDAALAGC 238 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA LP ++ D+ +L ++ D + V+ +P T K++ Sbjct: 239 GIAFLPTWLAADSLRHGDLEMVLSDCEVENIAVHAVWPVTRALTPKVR 286 >gi|269104878|ref|ZP_06157574.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268161518|gb|EEZ40015.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 295 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 135/294 (45%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F GSF AE+ +S + + I GLE+ +G KL + R LT G + H Sbjct: 7 IEIFVRAVELGSFAVVAEERGISAQMVGKHIRGLESSLGTKLLAKSTRYQALTAAGEQFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ Q ++ + +P GKL++ ++LG +L+ L +F+ YP ++I+LI Sbjct: 67 LRCLNILSEMNAAQEDIYRNINEPIGKLKLCCGVNLGISLIAPLLGQFIQQYPKLEIELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN DI D D R L+ ++ + M A A+P YL P +EL+ Sbjct: 127 LDNNPPDIQRDGFDVIFHDRVE-GYEFLVGHQICSYDMVACASPEYLHKYGIPKHPKELE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISC-LQVNSYLSIMQYCVLGSGIAL 243 H + W P GE PRIS +NS +++ G+GI + Sbjct: 186 HHQCLKHS----TTYHAHRW--CFKGPDGEYFLPRISSRFMINSGQAMLAAAKEGAGITI 239 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 P + V+++ N L I+ P ++ Y +L+NT +L +F F+K+ Sbjct: 240 QPRFQVQNDLNSGSLTHILPSYTLPEIELFMLYKPSLRNTSRLILLNDF-FMKS 292 >gi|293605928|ref|ZP_06688298.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553] gi|292815715|gb|EFF74826.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553] Length = 304 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 18/289 (6%) Query: 11 FYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F+V A S SF+ A L +S S++ + +S LE +G++LF+R R LTLT +G+ Sbjct: 9 FFVQAASARSFSQAGRVLGVSSSTVGKSVSRLEERLGVRLFHRSTRSLTLTAEGALFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++E ++EL ++ P G+LRI+ + +G L+ L F+ YP I++ + Sbjct: 69 CRRILCEVEAAELELSQTQQAPRGRLRISLPV-VGM-LVTPALAAFMHRYPAIELDVDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P S L+ R + AAP YL P +L H Sbjct: 127 DRVVDVIDEGFDVVMRAAEPTD-SRLMSRPMGHYRQIVVAAPAYLAKRGTPRVPADLTGH 185 Query: 190 -----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L T G L P ++ A P + + N+ +S+M + G GIA L Sbjct: 186 ACLQYRLPTTGKLQPWPLKRSEADADYTLP------NSMVCNTAISLMDIAISGLGIACL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD++ + + LV I+E+ + T +P + KL+ F +F+ Sbjct: 240 PDFMARPAIERGELVPILEEHVQHQGTFRLLWPSSKHLAPKLRVFIDFM 288 >gi|103488524|ref|YP_618085.1| LysR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978601|gb|ABF54752.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis RB2256] Length = 310 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 127/263 (48%), Gaps = 14/263 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWDKL+ F +VAR G+ A LH+ +++SRQIS LE + LF R G LT Sbjct: 16 MDWDKLQYFLMVARHGTLARAGAALHVDATTVSRQISALEGALQQTLFERAPTGFVLTAA 75 Query: 63 GSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L V +I + ES SG+LR++ + G + + L F+ +P+ Sbjct: 76 GRAL--VPHAEAMAAAAARIHKADESGAALSGQLRVSVSEGFGNSFIAPRLGRFVAAHPE 133 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++I L+ + ++ S AD A+ L +P + LI RKL + Y AP + + + Sbjct: 134 LEIDLVASSGFLNPSRREADMAVLLARP-RKGPLITRKLADYSLGLY-APADRPDWQAAV 191 Query: 182 SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238 + L + + G IP + + ++L + EP + + ++ +S L+ + G Sbjct: 192 AATPLSRAGIPVIG-YIPDILYAPELDYLGEI-----EPGLRATVRSSSILAQRRMIAGG 245 Query: 239 SGIALLPDYIVKDNPNLVRIMED 261 G+ +LP ++ +P LVR+ D Sbjct: 246 GGVGVLPCFLASGDPALVRVRPD 268 >gi|320324654|gb|EFW80728.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. glycinea str. B076] gi|320328764|gb|EFW84763.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. glycinea str. race 4] gi|330881993|gb|EGH16142.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S + + I LE +G++LF+R R + +T +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LET ++EL + P G+LRI ++ L L+ + EF+ YPDI++ + Sbjct: 69 CRRILSELETAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIIEFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ R++ + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSRRMGGFQLKIVGAPDYFFRRGTPQHPADLSRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P + +W + R G + QV N+ ++ G GIA LPD Sbjct: 186 ACLLHK--FPSSGKFEHW--PLRREAGADDLDLPQVMVCNTTEILVDVARAGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ + LV I+ D + + +P + + +L+ F +F+ Sbjct: 242 FMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFM 288 >gi|307728942|ref|YP_003906166.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583477|gb|ADN56875.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 305 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SFT +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L P G +R+ T+ L + LL L +F YP+I + Sbjct: 64 LFYDRCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPEIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ P + SSL+ R++ + A+P YL+ P ++ Sbjct: 124 RLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPTTLD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L +H + + + + + F + V+ I + + S L VN ++ LG GI Sbjct: 183 QLSEHRAVNY--VSARTGKTFPFEYEVNGEIAKVTMKSVLAVNDGSVYIRAGALGHGIIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + L I+ D +P + Y + +L+AF ++ Sbjct: 241 PSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWV 290 >gi|326385562|ref|ZP_08207196.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209896|gb|EGD60679.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 307 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 5/197 (2%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 + F D+ R +F VA GSF+ A L L+ S++SR I +E +G++L R R L Sbjct: 11 VRFHADRARSLELFATVAAEGSFSAAGRVLGLTPSAVSRAIDRIEVRLGVRLLLRSTRAL 70 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT +G+ R + L+ + + +S+ P G+LR++ + G+ + L EF Sbjct: 71 TLTTEGAAYLRAARRILGDLDDAEQAIADSAA-PRGRLRVSAALAHGRLCIVPLLGEFAR 129 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYP I + + L ++ +DI AD AIR P+ S+L RKL A+P YL+ Sbjct: 130 LYPHILVDISLGDRLVDIGAGQADVAIRF-GPLADSTLTARKLGENRRVVVASPAYLERH 188 Query: 178 REPLSIQELDKHNLITF 194 P ++L HN + F Sbjct: 189 GTPQVPEDLHDHNCLGF 205 >gi|299069754|emb|CBJ41033.1| putative transcription regulator protein, LysR [Ralstonia solanacearum CMR15] Length = 311 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 18/294 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L V G F AA +L L+ SS++RQ++ LE +G L R R +TLTE G + + Sbjct: 7 LNALMAVVEHGGFAPAARRLGLAPSSLTRQLNALEDSLGTLLLNRSTRTVTLTEAGQQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + E + PSG LRI+ + G+ + L FL +P +++ + Sbjct: 67 EDARSILDALENADRSVSELAGPPSGLLRISLPVAFGRLHVAPALPAFLRRFPGMRLDIQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AIRL P S +L+ RKL A+P YL P +LD Sbjct: 127 LSDTVANLVEERIDVAIRLGAPA-SQNLVARKLAPHRRVICASPDYLGEHGAPAQPADLD 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 +HN + F W T+ R ++ L N + + + G+G+ L+ Sbjct: 186 QHNCLLFD----YATATSTW--TLKRAGKTAKVQVAGNLHANGSELLREAAIGGAGLLLM 239 Query: 245 PDYIVKDNPNLVRIME--DVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 P ++V ++ R++ + +PS ++ Y + + + KL AF +F+ Sbjct: 240 PTWLVGEDMAAGRLVPVLEAWSPSLGADEEGAIWAVYQQNRRGSKKLAAFLDFL 293 >gi|254437565|ref|ZP_05051059.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198253011|gb|EDY77325.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 296 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 12/293 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+K R F V A GS + AA L ++Q ++ RQ+ GLE E+GI LF R RGLTLT Sbjct: 6 IKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLTLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L ++ + S G + I+ + LL + + ++ P Sbjct: 66 PSGLELLDHVRDMGEAAGRVSLTALGQSQALEGTICISASETYAAVLLPPIIAKLRIMEP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ+++++ N D+ AD AIR +P + LI +K+ YA P Y+ P Sbjct: 126 AIQVEIVVANHASDLRRREADIAIRNFRPTE-PDLIAKKIGDADAILYATPDYIGKIGNP 184 Query: 181 LSIQELDKHNLITF--GDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +L + + G ++ K + L + P L SYL + + Sbjct: 185 TKPYDLRHADFVNMDHGGMMLKGLNTLGLGLTEANFP--------LLTESYLVMWELVRQ 236 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ I +L +I +P + R++ D+ F ++ L + +++ +F+ Sbjct: 237 GAAIGVLDAHIGDADPIVRRVLPDLEPLVFPIWLVAHRELSTSRRIRRVYDFL 289 >gi|53716023|ref|YP_104869.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53721051|ref|YP_110036.1| LysR family regulatory protein [Burkholderia pseudomallei K96243] gi|67642058|ref|ZP_00440820.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|76818084|ref|YP_336676.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121596750|ref|YP_990759.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124381405|ref|YP_001025243.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126446886|ref|YP_001077222.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|126457194|ref|YP_001074058.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134284058|ref|ZP_01770753.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|166998999|ref|ZP_02264849.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|167721907|ref|ZP_02405143.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167821636|ref|ZP_02453316.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167826451|ref|ZP_02457922.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167847965|ref|ZP_02473473.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167896518|ref|ZP_02483920.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167908380|ref|ZP_02495585.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167913202|ref|ZP_02500293.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167921148|ref|ZP_02508239.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|226193531|ref|ZP_03789136.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237509204|ref|ZP_04521919.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242313913|ref|ZP_04812930.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254179136|ref|ZP_04885789.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254185558|ref|ZP_04892145.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254192091|ref|ZP_04898589.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254192673|ref|ZP_04899109.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254204288|ref|ZP_04910646.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254209455|ref|ZP_04915800.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254265129|ref|ZP_04955994.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254301864|ref|ZP_04969306.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|254359579|ref|ZP_04975851.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52211465|emb|CAH37455.1| putative LysR-family regulatory protein [Burkholderia pseudomallei K96243] gi|52421993|gb|AAU45563.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|76582557|gb|ABA52031.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] gi|121224548|gb|ABM48079.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|126230962|gb|ABN94375.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|126239740|gb|ABO02852.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|134244669|gb|EBA44768.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|147744825|gb|EDK51907.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147749975|gb|EDK57047.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|148028766|gb|EDK86726.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|157825034|gb|EDO88926.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157987571|gb|EDO95338.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|160694654|gb|EDP84663.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|169649428|gb|EDS82121.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|184209792|gb|EDU06835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|225934413|gb|EEH30395.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|235001409|gb|EEP50833.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|238523121|gb|EEP86561.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|242137152|gb|EES23555.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|243064817|gb|EES47003.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254216131|gb|EET05516.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|261826302|gb|ABM99172.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] Length = 305 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VV R SF+ AAEQL +S + +S++++ LE ++G +L +R R + +TE G + Sbjct: 8 DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ T ++ ++ ++ + P G LRI+++ G+++L L F YP + ++ Sbjct: 68 VYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I + LI ++L T + A+P YL P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARYGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + I + F W TV ++ L N +Q+ + G GI L Sbjct: 187 LGAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242 Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P L R++ + P+ V+ YP L + K++ +F+ Sbjct: 243 --RSIWEAGPLLASGELRRVLPEASQPA-NVWAVYPARLAASAKVRVCVDFL 291 >gi|293403417|ref|ZP_06647508.1| transcriptional regulator [Escherichia coli FVEC1412] gi|293408441|ref|ZP_06652280.1| conserved hypothetical protein [Escherichia coli B354] gi|298379028|ref|ZP_06988909.1| transcriptional regulator [Escherichia coli FVEC1302] gi|300896274|ref|ZP_07114818.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|301020069|ref|ZP_07184199.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|281177480|dbj|BAI53810.1| putative transcriptional regulator [Escherichia coli SE15] gi|284920105|emb|CBG33164.1| LysR-family transcriptional regulator [Escherichia coli 042] gi|291429270|gb|EFF02290.1| transcriptional regulator [Escherichia coli FVEC1412] gi|291471619|gb|EFF14102.1| conserved hypothetical protein [Escherichia coli B354] gi|298280141|gb|EFI21645.1| transcriptional regulator [Escherichia coli FVEC1302] gi|300359815|gb|EFJ75685.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300398946|gb|EFJ82484.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] Length = 297 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|197248414|ref|YP_002147807.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212117|gb|ACH49514.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 303 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V + L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALGDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|241663121|ref|YP_002981481.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240865148|gb|ACS62809.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 308 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT+ G Sbjct: 7 ETMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQA 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ Q ++S G+LR+ + + + ++ L L +P+++I+ Sbjct: 67 FYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D + DC +R+ + SSLI R L +H A+P Y+ P ++ + Sbjct: 127 LSSTDRRVDPVREGFDCVLRIGT-LTDSSLIARPLGQLHQVNCASPAYIARYGMPRTLDD 185 Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LD+H ++ T G P W TVD R P + V+S S C G G Sbjct: 186 LDRHRIVHYVQTLGTKSP------GWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLG 239 Query: 241 IALLPDY-----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + P Y + D LV +M D P V YP +++ F N++ Sbjct: 240 MIQAPVYAGLSSAIADG-TLVDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWM 293 >gi|309379472|emb|CBX21838.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 299 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S+ISR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAISRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLVPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE-----SGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIACLSDFLVDNDIAERKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFV 289 >gi|262191780|ref|ZP_06049953.1| transcriptional regulator [Vibrio cholerae CT 5369-93] gi|262032358|gb|EEY50923.1| transcriptional regulator [Vibrio cholerae CT 5369-93] Length = 300 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELGVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|255261546|ref|ZP_05340888.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] gi|255103881|gb|EET46555.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] Length = 292 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 14/298 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AA+ L + +++ R I LE +G KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDALEIRLGAKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L RV + ++ SG L + T+I+ LL L EF +P++ Sbjct: 63 TDLLRVAQITDDQFSQLMGRIKGQGQGVSGDL-VVTSINALSPLLTPVLTEFQEEHPEVC 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ + + A AIR P Q +++Q + + M A+ Y++ +P Sbjct: 122 VRFLTGDRVLRLEYGEAHVAIRAGTAPDQPDNVVQ-PFIKLGMRLVASKGYIEKYGKPDE 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WL-ATVDRPIGEPRISCL-QVNSYLSIMQYCVLGS 239 ++L H +I D F+ W+ ATV P + + +V +++ V G+ Sbjct: 181 PEQLKDHKIIGHND--DNSRAPFHKWMRATV------PESAIVYRVTDNRAMIDAVVNGA 232 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 GI + D++ +++ LV I+ V+ L T K++AF + +A++W Sbjct: 233 GIGFVSDWVYRNDDTLVEILPSQDDWGAPVWLVTHVDLHRTAKVQAFLTHLKARAKEW 290 >gi|218703580|ref|YP_002411099.1| putative LysR family transcriptional regulator [Escherichia coli UMN026] gi|218430677|emb|CAR11549.1| putative transcriptional regulator, lysR family [Escherichia coli UMN026] Length = 311 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 19 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 79 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 138 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 199 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 256 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 257 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 289 >gi|153801959|ref|ZP_01956545.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] gi|124122534|gb|EAY41277.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] Length = 301 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPAYFTQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + + +D P+ LQ + +++ + +GI +P Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQALDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|311107410|ref|YP_003980263.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310762099|gb|ADP17548.1| bacterial regulatory helix-turn-helix protein, LysR family protein 141 [Achromobacter xylosoxidans A8] Length = 306 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 105/187 (56%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +GSF AAE+L+L++S++ + I+ LE +G +LF+R R +LT+ G + Sbjct: 13 IEVFVQAVEAGSFALAAERLNLTRSAVGKSIARLEARLGARLFHRTTRQQSLTDDGQAYY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +L+T + EL +P G+LR++ + G++ + L+E L +P +QI++ Sbjct: 73 DRCVRALAELQTAEAELDSGRREPQGRLRVSAPLVFGRHCVAPVLRELALQHPQLQIEIS 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR+ + S+SL R+L M A+P Y++ P ++ EL Sbjct: 133 FNDRVVDLIEEGYDLGIRVGELPDSASLAARRLGMQTMGIGASPAYIQAHGRPTTVDELT 192 Query: 188 KHNLITF 194 +H+ I + Sbjct: 193 QHSCIAY 199 >gi|262276494|ref|ZP_06054303.1| transcriptional regulator LysR family in formaldehyde detoxification operon [Grimontia hollisae CIP 101886] gi|262220302|gb|EEY71618.1| transcriptional regulator LysR family in formaldehyde detoxification operon [Grimontia hollisae CIP 101886] Length = 295 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 126/249 (50%), Gaps = 10/249 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW + F V + SFT AA++L S + ISRQIS LE + +L +R R ++ TE+G Sbjct: 3 DWQGVSEFLAVVETASFTKAAKRLGASTAHISRQISLLEERLNTRLLFRTTRKVSTTEEG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + L+ +I + + P+G +++ + G+ ++ + +F+ YP+IQ Sbjct: 63 DIYYQHCRLLADGLKEAEIAVTQLHETPNGHIKLTAPVTYGEKVVMPLILDFMDAYPEIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + L N +D+ D A+RL + + SS++ ++L T + +P YL P ++ Sbjct: 123 IDVDLTNATLDLVDASCDVALRLGR-LTDSSMVCKRLSTRRLIVCGSPAYLSKHGTPHTL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 EL +HN + + D+ W + R+ L+ NS ++++ + G G+ Sbjct: 182 SELAQHNCL-------RGQHDY-WRFREEGKERSVRVRGLLRCNSGIALLDAAIRGKGLI 233 Query: 243 LLPDYIVKD 251 LPDY + D Sbjct: 234 QLPDYYLND 242 >gi|183179541|ref|ZP_02957752.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] gi|183012952|gb|EDT88252.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] Length = 309 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 6/293 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++ +F V GSFT AAE L +++S +S QI+ LE V ++L R R ++LT Sbjct: 14 MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 73 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G ++ + + + E + + + SG +RI TTID+G LL L EF YP Sbjct: 74 TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + LD+ D+ D IR+ + + SSSLI R + + YA+ YL+N Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLIGRVIAPFELGIYASQTYLENAPPI 192 Query: 181 LSIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +IQ+L++H+ + L +P V + S NS L +M G Sbjct: 193 HTIQDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGL 250 Query: 240 GIALLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ + +++ P+ LVR+ D S T+ YP +++ F +++ Sbjct: 251 GVGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 303 >gi|254248311|ref|ZP_04941631.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124874812|gb|EAY64802.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 304 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +G+FT AA L L+ +++S I LE E+ +KLF R RG++LTE G + Sbjct: 10 LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 R T Y ++ + EL+++ +P+G LR+ T + L + L+ L F YP +++++ Sbjct: 70 RQTEPAYRQVMQARDELKDARSEPNGLLRV-TALPLARLLVIAPVLATFRERYPKVRLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 DN+ +DI+ D D IRL +Q + R + A+P YL P SI L Sbjct: 129 RYDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAAL 188 Query: 187 DKHNLITF 194 +H I F Sbjct: 189 AQHACIRF 196 >gi|187924756|ref|YP_001896398.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715950|gb|ACD17174.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 312 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + + YPD+QI+L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQERYPDVQIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ L + S L+ ++L + A A+P YL+ P + +L Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATSLPDSGLVSQRLGSAFSIACASPAYLERHGVPQTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVLGSGIA 242 +H + ++ W+ D P GE I+ QVN ++ G G+ Sbjct: 186 TRHECL---QMVTPVFPTEKWI--FDGPNGEETIALGATSFQVNVAEAMAVAVSSGMGVG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L+P Y LV ++ + + +Y YP K++ + F+ Sbjct: 241 LIPIYSAISGLRKGELVWLLPEYTSQPMNLYALYPSRQYLDAKIRTWVEFL 291 >gi|167561024|ref|ZP_02353940.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 351 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 12/286 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF VA GSF AA + +S + +R ++ LE +G +L R R L+LTE G Sbjct: 6 SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +LE + + + +P G LRI + G + L L+ + +P + L Sbjct: 66 LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D I + + ++S+S++ R+L T M A P YL+ P + L Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEHL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ E + P GE R+ + + N+ + Q+ +LG G+A+ Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNIVVANNTEMLRQFAMLGMGVAI 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP Y++ + LVR++ + P + YP K++ F Sbjct: 240 LPSYLIGSDIARGKLVRLLSEYRLPQVEINIAYPSRRHLPAKVRTF 285 >gi|241666657|ref|YP_002984741.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862114|gb|ACS59779.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 317 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 141/302 (46%), Gaps = 14/302 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA QL S +++SR+I LE + +KLF R+ RG LT Sbjct: 7 FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ + + E + +L + S+ G +R++ L +F +P + Sbjct: 67 GTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPQFAAQHPHL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + + +S AD ++ L +P + + KL H+ Y + YL + S Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEP-KGGAYFAEKLTDYHLQVYGSREYLAKAPDINS 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLGS 239 ++L H +++ +E+ + +D +G+ PRI Q +S + + G Sbjct: 186 REDLLSHPFVSY-------IEEMIFAPGLDY-LGDVHPRIKPQFQSSSIFAQLTATRNGL 237 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDW 297 G+ +LP + P LVR++ D I + LK +++A +F+ ++ D Sbjct: 238 GLCILPYFFASRYPELVRVLPDEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGEDA 297 Query: 298 KF 299 +F Sbjct: 298 RF 299 >gi|83719671|ref|YP_442520.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83653496|gb|ABC37559.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 327 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 33 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 92 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 93 LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 152 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 153 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPETLDDL 211 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R+S ++ + + ++C+ G G+A Sbjct: 212 ARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 268 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 269 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 316 >gi|218698798|ref|YP_002406427.1| putative transcriptional regulator, lysR family [Escherichia coli IAI39] gi|218368784|emb|CAR16530.1| putative transcriptional regulator, lysR family [Escherichia coli IAI39] Length = 324 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 32 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 91 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 92 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 151 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 152 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 211 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 212 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 269 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 270 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 302 >gi|110640569|ref|YP_668297.1| LysR family transcriptional regulator [Escherichia coli 536] gi|306813221|ref|ZP_07447414.1| putative transcriptional regulator, lysR family protein [Escherichia coli NC101] gi|110342161|gb|ABG68398.1| putative LysR-family transcriptional regulatory protein [Escherichia coli 536] gi|222032111|emb|CAP74850.1| hypothetical transcriptional regulator ycjZ [Escherichia coli LF82] gi|294490188|gb|ADE88944.1| transcriptional regulator, LysR family [Escherichia coli IHE3034] gi|305853984|gb|EFM54423.1| putative transcriptional regulator, lysR family protein [Escherichia coli NC101] gi|307628223|gb|ADN72527.1| putative transcriptional regulator, lysR family protein [Escherichia coli UM146] gi|312944888|gb|ADR25715.1| putative transcriptional regulator, lysR family protein [Escherichia coli O83:H1 str. NRG 857C] gi|323953080|gb|EGB48948.1| LysR substrate binding domain-containing protein [Escherichia coli H252] gi|323958722|gb|EGB54423.1| LysR substrate binding domain-containing protein [Escherichia coli H263] gi|324010236|gb|EGB79455.1| LysR substrate binding domain protein [Escherichia coli MS 57-2] gi|330910100|gb|EGH38610.1| transcriptional regulator, LysR family [Escherichia coli AA86] Length = 297 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P+ +V+ ++ L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 275 >gi|89902257|ref|YP_524728.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346994|gb|ABD71197.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 325 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 19/296 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 SFDW +R F V GS AA+ LH SQ ++ R I+ LE+++G+ LF R RGL T Sbjct: 34 SFDWSLVRSFLAVLDHGSLLGAAKVLHTSQPTLGRHIAELESQLGVVLFERTGRGLVPTA 93 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 KL + + L + K +G +RI + + +L L + PD Sbjct: 94 TALKLADAARGMADGADRLARTLAGAQAKNTGTVRITASTPVAVQILPPILSQMRQALPD 153 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CR 178 IQ++L+ N ++ AD A+R+ +P Q +L+ +K+ + + A+A YL R Sbjct: 154 IQVELVASNTVSNLLRREADIAVRMVRPEQ-GTLVAKKIGDVKLGAFANRAYLARRSPIR 212 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---ISCLQVNSYLSIMQYC 235 +P+ +L H LI D + F R +G P + + + ++ Q Sbjct: 213 QPM---DLLGHTLIG-SDTDTAILNGF-------RAMGFPASKDLFAFRTDDFIVQWQAV 261 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI L Y+ + + ++V+++ DV+ P ++ ++ + +++ +F+ Sbjct: 262 RAGLGIGFLASYMARTDADVVQVLPDVLRIPPLPMWLAVHREIRTSKLIRSVYDFL 317 >gi|296783892|gb|ADH43111.1| transcriptional regulator [Serratia marcescens] Length = 300 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 11/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F VAR GSF+ AA +L + SS+ R I LE+ +G LF R RGL LT+ G Sbjct: 8 EHLPIFLDVARLGSFSAAARRLGMVPSSLVRHIDALESALGAALFVRSTRGLLLTDAGEL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + EL + P G LRI+ G+ + L +P + + Sbjct: 68 LLTRAASLMADITGIHAELSALNETPQGTLRISCLPTFGKTYVLPLLPTLAERHPQLSVD 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D + + D A+R+ + + S+L ++ A+P Y+ P ++ Sbjct: 128 LDLTERQTDPTQERLDAALRIGEQ-KDSALYASRIAAQRWVMCASPAYVARYGLPSDLEA 186 Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H LI + P C W +D + L+ + + + Q +LG GIA L Sbjct: 187 LPQHRLIARYHKQQPAC-----WAQILDAALMSRCTMALRCDDFTAQRQAALLGLGIAFL 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V N LV+++ED +Y P A K + +L AF + Sbjct: 242 PNWVVGPDLQNGQLVQMLEDPRHEQQGIYLLRPMA-KVSARLAAFTALL 289 >gi|254560085|ref|YP_003067180.1| transcriptional regulator [Methylobacterium extorquens DM4] gi|254267363|emb|CAX23198.1| Putative transcriptional regulator [Methylobacterium extorquens DM4] Length = 309 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V R GSF AA+ L + S++SR ++ LE +G+ L R R LTLT +G Sbjct: 18 EMEAFLQVVRRGSFAAAAKVLRQTPSAVSRAVARLEARLGVALLRRTTRSLTLTPEGEAY 77 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +++ +L+ + L +++ +PSG+LR+ ++ G +++ L FL YP + + L Sbjct: 78 RDRAADLVAELDAIERGLTQTAAEPSGRLRVNASVPYGTHVILPVLPRFLAAYPRMSLDL 137 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ AD AIR+ P++ + L R L M AAP YL P +L Sbjct: 138 ALTDEVIDLPATQADVAIRI-GPLRDTRLRARSLGRSRMVVVAAPSYLAREGVPDHPDDL 196 Query: 187 DKHNLITF 194 ++N + F Sbjct: 197 ARYNCLNF 204 >gi|170695897|ref|ZP_02887037.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170139195|gb|EDT07383.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 312 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + + YP++ ++L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQQRYPEVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ L + S L+ ++L + A+P YL+ P + +L Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIVCASPAYLEKHGVPQTPSDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 H + ++ W T D P GE I + QVN ++ G GI Sbjct: 186 ASHACL---QMVTPVFPPDKW--TFDGPNGEETIALGPATFQVNVAEAMAVAVTSGMGIG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 L+P Y +LVR++ D + +Y YP R ++ K R W Sbjct: 241 LIPIYSAISGLRKGDLVRLLPDYTSQEMNLYALYPS-----------RQYLDAKIRTW 287 >gi|241205386|ref|YP_002976482.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859276|gb|ACS56943.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 310 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 129/274 (47%), Gaps = 15/274 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GSF + + LS+S+ + + LE +G +L R R L LT++G + Sbjct: 11 IFMAVVDAGSFIAGGQTMGLSRSAAGKAVIRLEDRLGARLLNRTTRTLNLTDEGRMFYER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ ++ + + + P G LR+ G+ ++ L+++L +PDIQ+++ Sbjct: 71 GLQILALVDEAEASVAGQNSTPRGVLRLTVPDAFGRLVVLPLLEKYLQAWPDIQVEVSFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ DI + D AIR+ + L+ R + T A+ YL EP I +L H Sbjct: 131 DRLADIVEEGFDLAIRIGATATDTRLVSRVIATYKARLCASSAYLAERGEPRDIDDLAVH 190 Query: 190 NLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + + F + E +W+ DR S L+++S +I + G GIALL Sbjct: 191 DCLIFAGRNQRQGWRFRGEGGSWIKAQDR-------SRLRLDSAEAIRDAALAGLGIALL 243 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 PD++V D+ L +I+ D+ T + YP+ Sbjct: 244 PDFLVADDLVTGRLRQILPDLETDDVKIVTLYPD 277 >gi|153827879|ref|ZP_01980546.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] gi|148876724|gb|EDL74859.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] Length = 301 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVDFSLIYHKDKYKPVRLKRFIEF 290 >gi|330808689|ref|YP_004353151.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376797|gb|AEA68147.1| putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 294 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 125/259 (48%), Gaps = 7/259 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA +L+ + ++++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRYFLELQRSGRLLTAARRLNTTHATVARHIEAIEKSLGSALFVQHAQGYELTPA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q ++ +SS P GK+R+ T LG L + YP + Sbjct: 62 GETLLKHAEAMENVALLAQEDITQSSA-PLGKIRLGVTEGLGIMFLASRMDGLFQRYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + L+ RKL + YA+ YL S Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-AADLLVTRKLTDYSLALYASQAYLDRSPALRS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H I + D + E L ++ PR+ S ++ Q G GIA Sbjct: 180 REDLARHAWIGYVDDLLFSQE----LMFLNSFCRNPRV-VFHSTSVIAQQQAARSGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIMED 261 +LP Y+ +P LV ++ D Sbjct: 235 VLPCYMASGDPTLVPLLPD 253 >gi|322835326|ref|YP_004215352.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321170527|gb|ADW76225.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 301 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 147/297 (49%), Gaps = 21/297 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V R +FT AAE+L ++QS++S Q+ LE G++LF R + L+LT G+ L Sbjct: 10 LRAFEVATRHTTFTSAAEELFITQSAVSHQLKKLEDSWGLQLFQR-GKTLSLTPAGAALA 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + KLETT +L+E K +LR++TT L L E L+P+I + L Sbjct: 69 PLVREFFSKLETTLADLREQ--KGRVRLRVSTTYSFALKWLLPRLPELARLHPEILVSLE 126 Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +K I+ + +D AIR + + + + +L + A+P +L P Sbjct: 127 STDKAINFASADSDVAIRFGHGNYAALHTEFMFREQLFPV-----ASPAFLAGFGIPAEP 181 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL + L+T DL+PK F + + E S ++ ++I + +LG GI Sbjct: 182 AELLRFPLLTRDGADLVPKWDAWFKQVGVNTDVLHE---SVRFADTNMTI-EAALLGQGI 237 Query: 242 ALL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 AL ++ K+ + +LVR+ + V YF PE ++ + FRN++ +++ Sbjct: 238 ALARSGHVEKEIHDGSLVRLFDVVFPSPAAYYFVCPEGIETQPHILKFRNWLLAESQ 294 >gi|319409826|emb|CBY90134.1| HTH-type transcriptional regulator CrgA [Neisseria meningitidis WUE 2594] Length = 299 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSESYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE--PSSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289 >gi|315287780|gb|EFU47183.1| LysR substrate binding domain protein [Escherichia coli MS 110-3] Length = 315 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 23 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 83 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P+ +V+ ++ L++++++ P+F Y+ Y Sbjct: 261 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 293 >gi|300934903|ref|ZP_07149957.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|300459809|gb|EFK23302.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] Length = 315 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 23 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 83 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 261 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 293 >gi|194443789|ref|YP_002042153.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402452|gb|ACF62674.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 303 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 143/294 (48%), Gaps = 19/294 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239 E + +P + W T + + + + V+S S+M + + GS Sbjct: 180 LESLAQAEWIIHERLPTPLR---WSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGS 236 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ALLP ++V + L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 237 GVALLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|15597056|ref|NP_250550.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107101292|ref|ZP_01365210.1| hypothetical protein PaerPA_01002326 [Pseudomonas aeruginosa PACS2] gi|218892184|ref|YP_002441051.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234954|ref|ZP_04928277.1| hypothetical protein PACG_00830 [Pseudomonas aeruginosa C3719] gi|9947848|gb|AAG05248.1|AE004612_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126166885|gb|EAZ52396.1| hypothetical protein PACG_00830 [Pseudomonas aeruginosa C3719] gi|218772410|emb|CAW28192.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 295 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 135/279 (48%), Gaps = 14/279 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L+ F V SGS + AAEQ+ L+ S++SR +S LE ++G L R R + LT Sbjct: 1 MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ ++E + L P+G+LRI + + ++ EF LYP Sbjct: 61 EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DIQ++L ++ ID+ D AIR+ + S+L R L +H A+P YL P Sbjct: 121 DIQLELNTNDLIIDLLEQRTDVAIRI-GALSDSTLHARPLGASRLHILASPEYLARHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 SI+ L H L+ F P+ + + + A DR +P IS +S ++ Q + Sbjct: 180 ASIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLALSHQ 234 Query: 240 GIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYF 271 GIA L ++ ++D P M + P VY+ Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYY 273 >gi|330502079|ref|YP_004378948.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328916365|gb|AEB57196.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 318 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 19/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSFT AA+ L LS + +SR I+ LE + +L R R L LTE G + Sbjct: 7 MRVFIQVVERGSFTAAAQALDLSTAQVSRLIADLEQHLQARLLQRTTRRLALTETGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +++ E + + + PSG+LR+ T LG L + + Y + ++L Sbjct: 67 ERSRQILGQIDEADAEARGAHLTPSGRLRVHTMTGLGLQHLTPLIARYAERYRQVVVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D D + + + S L+ ++L ++ AAP YL +L Sbjct: 127 LAQRTPDLLEDGHDVTVAFARDLPDSQLVAQRLGPVYSVLCAAPSYLAKHGIAQRPSDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + D + + DF D + C QVN ++++ G G LLP + Sbjct: 187 QHRYLRLTDPLYRGQWDFG-----DEQLDVLPAECFQVNVAEALVKAAQAGMGFCLLPSF 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + L+RI+ + +Y YP R F+ K R W Sbjct: 242 VASQPLREGRLLRILPQHRLRALNIYAMYPS-----------RRFLDAKTRTW 283 >gi|262164549|ref|ZP_06032287.1| transcriptional regulator [Vibrio mimicus VM223] gi|262026929|gb|EEY45596.1| transcriptional regulator [Vibrio mimicus VM223] Length = 300 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ +++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENLEVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S I RKL + M A P YLK C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTEVAMSTLATPAYLKQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHNTTQQTIDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + ++ LV + D PS Y + +LK F F Sbjct: 245 FYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|163761415|ref|ZP_02168489.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] gi|162281410|gb|EDQ31707.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] Length = 305 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 32/285 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW++ R F V A GS + AA L ++Q ++ RQ++ LE E+G+ LF R RGLTLT Sbjct: 6 VNFDWNRARAFLVTAEEGSLSAAARALGMAQPTLGRQVAALERELGVALFERVGRGLTLT 65 Query: 61 EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLR-IATTIDLGQNLLQGN----- 111 G +L R E ++ S+ SGK + I T+ + + Sbjct: 66 PSGLELMDHVRAMGEAAARM----------SLSASGKAQAIEGTVSISASETDAAFRLPP 115 Query: 112 -LKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170 +++ P I ++++ N + D+ AD AIR +P Q +L+ RK+ I YA Sbjct: 116 IIRKLRETAPGIDVEIVATNTESDLRRREADIAIRNYRPTQ-PNLVARKIRDIEGRIYAT 174 Query: 171 PHYLKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227 P YL++ P + ++ I F G+LI M F T + S + S Sbjct: 175 PFYLESIGNPSAPEDFAAAEFIGFNRSGELI-AAMARFGLTLT------QKNFSLIS-ES 226 Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272 +L + G GI ++ I P +VR++ V F V+ Sbjct: 227 HLVQWSHVKQGLGIGVMAADIGDAEPGVVRVLPGVDPLVFPVWLV 271 >gi|329903518|ref|ZP_08273531.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] gi|327548301|gb|EGF32992.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 141/294 (47%), Gaps = 14/294 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F AR+GSFT AA++L +++S++ + I+ LE + IKLF+R R +TLT G+ Sbjct: 12 IFVAAARAGSFTAAADRLGITKSAVGKSIARLEQRLAIKLFHRTTRKITLTVDGAAYFAS 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++ LQ PSG+LRI G+ ++ L E YP++ + L Sbjct: 72 CATALDGIADAELALQNGHQVPSGRLRIDMPAAFGRGVILPILAELTQTYPELTLTLTFT 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPLSIQELDK 188 + ID + D IR + ++ L+ + L + A+P YL + P SI +L++ Sbjct: 132 DNLIDPIEEGIDLLIRFGEIKETGGLVAKLLSRERLRICASPAYLARKGGAPASIADLEQ 191 Query: 189 HN-LITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 H ++ + P W TVD E R S +V +++ + G GI L Sbjct: 192 HACIVGYRRNTP-----MPW-RTVDTDGKEVRFAPPSTYEVGDGDAVLAMTLAGCGICQL 245 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 P ++V++ + LV +++ V T +Y +P+ KL+ + + +K + Sbjct: 246 PSFLVRESLRSGALVSMLDAVSTCESGIYAVWPQTRHLLPKLRKVIDVLEMKGK 299 >gi|238028961|ref|YP_002913192.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237878155|gb|ACR30488.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 324 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 83/323 (25%), Positives = 141/323 (43%), Gaps = 36/323 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F A SGSF+ AA ++ + S++SR ++ LE ++GI LF R RGL LTE G Sbjct: 7 IRAFLCAAESGSFSKAAHRIAVKTSTVSRYVADLERDLGIALFNRSTRGLVLTEGGRLFR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V L+ + + P G LR+ G + +L E YP I + + Sbjct: 67 EHALVVMSALDEARDATSSLNASPRGLLRVTMPRAFGLRHVIPHLPELAERYPGIDVDAV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +++ D AIR+ + S LI R+L T A A+P Y++ P + + L Sbjct: 127 MTDTTLNLIDAGIDLAIRI-GALPDSQLIARRLATHRRVACASPAYVERHGMPATPEALA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP--------------------RISC-LQVN 226 H + F P +D W +G+ R+S L+V+ Sbjct: 186 GHATLRF----PLVSDDRWWFIRRQARVGQAPQETGDAGDSAPGKARDVAVRLSGRLRVD 241 Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKN 279 ++ Q + G GIALLP + + + +L+ ++ D + ++ YP Sbjct: 242 DAEALRQLAIAGCGIALLPTWAIGSALRDGSLLHLLPDWDAQATRAASAIWAVYPPKKTV 301 Query: 280 TGKLKAFRNF---IFLKARDWKF 299 + K++AF +F +F + W F Sbjct: 302 SSKVRAFIDFQAEVFARPGYWDF 324 >gi|224826641|ref|ZP_03699742.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224601242|gb|EEG07424.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 306 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 130/290 (44%), Gaps = 12/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V GS A E+L LS + ISR++ LE +G++L R R LT +G + Sbjct: 7 LHIFCAVVEQGSLVKAGERLRLSSAVISRRLINLEARLGVRLLQRTTRRQALTPEGELYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V +L T+ L +PSG L++ + G+ L +L FL YP +++ L+ Sbjct: 67 QRGRAVLDELAETEALLMARQHQPSGVLKVTASASFGRQHLAPHLPAFLERYPQLEVHLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ D AIR+ +P L+ R L AAP YL EP EL Sbjct: 127 LTDAVLDLVDGGLDLAIRIGQP-DKPGLVARPLCVNRRILCAAPGYLDRQGEPRHPAELA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 +HN + ++ + W ++D P G + L N ++ + C+ G GIA+ Sbjct: 186 RHNCLLLDEVGTRSQ---VW--SLDGPQGPTEVEVRGNLVSNLGDAVGEACLAGGGIAIR 240 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + V D R ++ P+ V YP + K++ +F+ Sbjct: 241 STWAVSDALRAGRVRQVLPGYALPAQEVLAIYPSRRHLSPKVRVLIDFLL 290 >gi|83748638|ref|ZP_00945656.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207727553|ref|YP_002255947.1| hypothetical protein RSMK03874 [Ralstonia solanacearum MolK2] gi|207741944|ref|YP_002258336.1| transcription regulator protein [Ralstonia solanacearum IPO1609] gi|83724682|gb|EAP71842.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206590790|emb|CAQ56402.1| hypothetical protein RSMK03874 [Ralstonia solanacearum MolK2] gi|206593330|emb|CAQ60257.1| transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 312 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 7/295 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF AA+ L +S + ++R ++ LE +G +L R R L+LT+ G Sbjct: 7 MRVFAKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V ++ + S G LRI + G ++L L F LYP++ + Sbjct: 67 QRCQQVLLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI D D I + + S L+ R++++ M A P YL+ P +++ Sbjct: 127 LSDRPIDIVEDGRDIGIMVSELGLGSHLVARRMISAEMIMAATPAYLRQHTTPQRAEDIA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246 H +I P+ ++ A + I P L V S +M VL GIA+L Sbjct: 187 DHRVIAMWH--PQLRHEWEMSAPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 Y+ + ++ LVR++ P ++ YP K++ F +++ +A + K Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298 >gi|167622444|ref|YP_001672738.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352466|gb|ABZ75079.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 315 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 13/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +++++F V GSFT AA L L+++++SR+++ LE + G++L +R R L LTE G Sbjct: 3 DLNRIQMFAQVVEQGSFTRAANALGLTKATVSRKVAELEADAGVQLLHRTTRALKLTEAG 62 Query: 64 SK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + HRV + + L+ + +L G L+I I++GQ +FL LYPDI Sbjct: 63 ADYFHRV-NRILTDLKNAEDQLSARQQTIKGHLKIVCPIEMGQLYFGRVFAQFLALYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ L N+ +D+ + D ++ L L+ A+P YL EP + Sbjct: 122 TIEAELTNRQVDVIAEGVDLLFQITAET-DDRLKSYALINTPKILMASPEYLDKFGEPTT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240 ++L +H I I D NW + EP S L+ N+ + + + G G Sbjct: 181 PEQLQEHQCIR----ISSPHIDGNWTLFNGKEWVTIEPE-SRLETNNITLMREAALEGLG 235 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 IA +P I D LV ++ D V P+ + + + F F++ Sbjct: 236 IAAIPLVIANDALEKGKLVTVLNDFPMKQSLVTMSMPQRVYLPRRYRVFIEFLY 289 >gi|319781638|ref|YP_004141114.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167526|gb|ADV11064.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 299 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 141/287 (49%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R SE+ ++++ ++ESS G+++++ + +L +F +PDI + + Sbjct: 66 YRRASEIVREVDSLADAVRESSGDVRGRIKLSAPRTFADAPIGQSLIDFAKQHPDIVLDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D A+R+ + +++SSLI R+L + A+P + P Q+L Sbjct: 126 QLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSIKLCASPELIAKHGTPTRPQDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I D + + ++ + P+ ++VNS ++ V G G +LPD Sbjct: 185 SRMPCIV--DTNGRGLNNWPFKGDNGDPVSVSVSGPIEVNSPMTARAAAVSGLGFTVLPD 242 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I + LV +++D I ++ YP K++ F +F+ Sbjct: 243 FIAAPDLASGRLVSVIDDRILSGGGIFAVYPHRRYLPAKVRVFVDFL 289 >gi|304397977|ref|ZP_07379853.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304354688|gb|EFM19059.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 299 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 5/270 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GSFT AAE L + + S+SRQI LE ++ +L +R R + LT+ G + Sbjct: 7 MQVFVRVAEMGSFTRAAESLGVPKGSVSRQIQALENQMATRLLHRTTRRVQLTQDGLVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q SGKLR+ ++ + + L EFL YP I+I+L Sbjct: 67 DRCLDLLSMIDDMDSLFQHEPASLSGKLRVDMSVAMATGFILPRLPEFLQHYPGIEIELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ + ++ S LI RK+ T + A+P YL P+ ++EL Sbjct: 127 SSDRQVDVIREGFDCVLRVGE-LKDSGLIARKIGTHTLINCASPGYLSRFGMPIRLEELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H ++ + + + F + + VNS + C+ G GI +P Sbjct: 186 QHAMVHYSQQLGQASPGFEYFDGRQCHYVHTG-GVVTVNSTETYRAACLAGLGIIQVPAA 244 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274 ++ + LV ++ ++ YP Sbjct: 245 GIQTLLERGELVEVLHRFPARPMPIHLLYP 274 >gi|187918816|ref|YP_001887847.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717254|gb|ACD18477.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 344 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 13/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V ++GSFT A +QL +++S++ + I+ LE + ++L +R L LT+ GS Sbjct: 46 NDIATFVTVVKAGSFTSAGQQLGITRSAVGKIIARLEARLQVRLLHRTPHSLGLTDDGSV 105 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ LE T+ + S P+G LRI+ I LG + + FL +P + + Sbjct: 106 FYGRCTQILEDLEETETAMAVRSATPAGSLRISLPIALGHRQVLPIIALFLERWPAVSAE 165 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D AIR+ +P S LI R + T + A+P YL P+S + Sbjct: 166 VSFTDRFVDLVDEGIDVAIRVGEPKPDSRLIARTVATQKLITCASPVYLAKRGAPVSPLD 225 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L H + F WL +G+ + L+++S +++ V G GI Sbjct: 226 LAHHECLQF----VSAGRPQPWLFA---GVGQQAVEAGGRLKMDSAEALIGAAVNGVGII 278 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP+Y+V + +L +++ + + YP T K++ F Sbjct: 279 NLPNYLVANEIRQGHLQPLLQSFAAQALPIRAIYPTRRHLTPKVRLF 325 >gi|70729843|ref|YP_259582.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344142|gb|AAY91748.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 298 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V F AA + + +S +S+QI LE +G++L R R L LTE G++ + Sbjct: 7 MRAFVVTVDENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLRLTEAGAEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV ++ + ++ + G LR+ + G L + F +P I++QL+ Sbjct: 67 ESVREVLATVDEAEQRARDGIAELRGVLRVNAPMSFGLRRLGPLVPLFHEQHPLIELQLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D D +R+ + SS++ R+L A+P YL P ++L Sbjct: 127 LSDQQVDPLRGGFDVTLRIAS-LPDSSMVARQLAPAPRIMVASPTYLARAGIPRQPKDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + +G L + + V R + P L N+ + Q G GIALLPD Sbjct: 186 SHQCLNYGYLQSGVSLQLSNGSDVQRVHVTGP----LHANNGDLLAQAAEAGMGIALLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +IV+D LV ++ + P ++ YP A + K +AF +F+ Sbjct: 242 FIVEDALAAGRLVPVLCEWQAPPISINVVYPSARRVPQKTRAFIDFL 288 >gi|83951032|ref|ZP_00959765.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] gi|83838931|gb|EAP78227.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] Length = 299 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 9/287 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ + ++A +G+ + AA++ S ++ R+I+ +E ++G++LF R G LT Sbjct: 5 LDWNDYQTVLLIAEAGTLSGAAQRSGTSHPTMFRRINAVEQKLGVRLFERFRTGYRLTSA 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ E+ T+ + ++PSG + +ATT L LL + + PDI Sbjct: 65 GEEVATTAREIEELTNATERRVAGRDLRPSGIVHLATTDSLLWGLLAPEIAHLRHVEPDI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + N+ D+S AD AIR + LI R+L I YAA L Sbjct: 125 VLDVTVSNEISDLSFREADIAIRPASAPE-DHLIGRRLGRIRQAVYAA--------RSLD 175 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + E D+ N + P + L R G + +S LS++ G+G+A Sbjct: 176 LSEGDQSNWAGLPWIGPNASMSYPQLHAWMRASGVEARCVAKTDSVLSMLAAVRAGTGVA 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +LP Y+ +P+L R+ ++ ++ L++T +++A +F Sbjct: 236 ILPCYLADPDPDLRRLGPEIEDLGVDLWMLTHPDLRHTARVRAVLDF 282 >gi|149191418|ref|ZP_01869669.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] gi|148834767|gb|EDL51753.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] Length = 299 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 129/273 (47%), Gaps = 8/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V +G+F+ AEQ +L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVVETGAFSRVAEQNNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF ++P + + Sbjct: 64 LVHGAKNVKQATQEAMESVSGYGENISGHIKMSVPSISGDLILADAVAEFCNMHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVDGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNSKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L +HN + + E W ++ R+S ++ ++ + + G GIA + Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKANKGNYIVRVSGSFSTDNATALRKAALGGHGIAYV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P +V N LV I D + +Y YP Sbjct: 240 PRCLVYHDIRNGQLVDIFPDQVGKRLGIYAVYP 272 >gi|87122262|ref|ZP_01078144.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86162405|gb|EAQ63688.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 292 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 137/290 (47%), Gaps = 10/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V G FT A E L+ +S+ISR ++ LE +G+ L R R TLTE G Sbjct: 4 NDMLVFAEVVAKGGFTAAGESLNKPKSNISRTVTRLEESLGVILLQRTTRKHTLTEVGQI 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +LE+ L+ + P G LR++ ++ +GQNL+ L F+ YP++++ Sbjct: 64 YYQHCLRIKEELESANHSLETLNQVPRGLLRVSASVSVGQNLIAPLLTGFMQAYPEVKLD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQ 184 L L N+ +D + D IR+ + + S+L+ L ++ YAAP Y N P S + Sbjct: 124 LRLINRRVDAIEENFDILIRVGE-LADSNLVASPLCDRRLNYYAAPTYFVNRARPCSDLS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L NL+ L F T P + + + I Q + G GI LL Sbjct: 183 NLSDFNLLHMKSLNAPAQWHFESDNTQKVIHFNP---SFESDDFSVIRQMLLDGYGIGLL 239 Query: 245 PDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY+ VK+ L ++ P ++ P T K++AF ++I Sbjct: 240 PDYMADAYVKEG-RLEPVLNAWQGPKVALHSLVPSRRGITPKVRAFLDYI 288 >gi|172060359|ref|YP_001808011.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992876|gb|ACB63795.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 307 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 7/291 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AAE L +SQ ++S+ I+ LE +G L YR +R L+LT G Sbjct: 6 DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + E + E +++P G +R+ + G L L FL YP + Sbjct: 66 ELLRDRAIRLLADAELIESEACAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + +DI D AIR+ + + SSL R+L + A+P YL P Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRHGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++++H +T+ +L P+ N + D +G ++ N+ I + G G+A Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPASGED--VGVSVHGRIRTNNADVIAPALLAGHGLA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P+++ D + L +M + V P L ++ +F+ Sbjct: 243 LQPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGLLRAARVTVLLDFL 293 >gi|163793890|ref|ZP_02187864.1| transcriptional regulator, LysR family protein [alpha proteobacterium BAL199] gi|159181001|gb|EDP65518.1| transcriptional regulator, LysR family protein [alpha proteobacterium BAL199] Length = 312 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 15/290 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR SFT AA +LH++Q++IS QI LE +G+ LF R R L LT+ G Sbjct: 8 NSLRAFEAAARHLSFTKAAGELHVTQAAISHQIKSLEEWLGMVLFKRQNRALLLTDAGQA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E + ++ +L+E SG L ++T L L F +PDI+++ Sbjct: 68 YLPPLREAFDRIHDATAKLRERD--KSGALTVSTFTSFAAKWLVPKLGRFASGHPDIEVR 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ +D D D IR + L +L+T + +P L +E Sbjct: 126 LAINDVLVDFGSDAVDVGIRYGRG-DWRGLRTERLMTEVVFVVCSPRLLDGPAPLTCPEE 184 Query: 186 LDKHNLITFGDLIPKCMEDFN-WL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H ++ D +P ED++ WL A PI R L N ++Q + G G+AL Sbjct: 185 LRYHTMLH--DDLP---EDWDTWLEAAGAGPIKARR--DLAFNHSEMVLQAAIDGLGVAL 237 Query: 244 LPDYIVKDNPNLVRIME--DVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290 +V D+ R+++ D+ P+ Y+ YPE + K+KAFR+++ Sbjct: 238 GRSVLVADDLAAGRLVKPFDLELPTQAAYYLVYPEGTQERPKVKAFRDWV 287 >gi|170735503|ref|YP_001774617.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821541|gb|ACA96122.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 305 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G + Sbjct: 7 MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V +++ + + ++ P G+L++ + + ++ L FL +PDI ++L Sbjct: 67 ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ + DC +R+ + S +I +++ ++ +P Y C EP ++ +L Sbjct: 127 VTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCGSPAYFARCGEPQTVDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 +H + + W VD GEPRI + VN + ++ V G G+ Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+ + L ++ D P+ + YP KLK F +++ Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290 >gi|134284333|ref|ZP_01771016.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|226943764|ref|YP_002798837.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|134244310|gb|EBA44425.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|226718691|gb|ACO77862.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 291 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 119/255 (46%), Gaps = 10/255 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V ++ F AA+ L + S++SR+IS LE +G++L +R R + LTE G Sbjct: 8 MALFVEVVKAKGFRSAADALGMPNSTLSRRISELEKSIGLRLLHRTTRKIELTEAGQIYF 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L E +PSG LR + +D L + EF LYP I Sbjct: 68 ERCKRIVDEARLAHEHLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYPGIIFDFD 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D AIR+ + ++S LI R L T+ + YA+P YL+ EP EL+ Sbjct: 128 LTPRRVDLVSEPFDVAIRMGES-ENSQLIARTLATLTPYLYASPGYLERSGEPSKPAELE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + D ATV +G +NS + + L GI LLP+ Sbjct: 187 RHECFNILRAGTWTLHDDKKTATVS--VG----GRFSLNSVGMLRRLATLDMGIILLPEE 240 Query: 248 IVKD---NPNLVRIM 259 IV D + L RIM Sbjct: 241 IVADELVSGKLRRIM 255 >gi|315182214|gb|ADT89127.1| transcriptional regulator [Vibrio furnissii NCTC 11218] Length = 304 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LTE G Sbjct: 10 IRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEQQMGVTLLIRTTRSLKLTEAGKTFF 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ + + + G++RI + LG+ ++ + +F+ YP +++ L Sbjct: 70 AQCEAALHSIDQAVLAAVDDTEAVRGQIRINSVGGYLGEEIVADLITQFMARYPHVRVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ D D A R+ K ++ S + RKL+ + M YA+P YL P +EL Sbjct: 130 DLSSHRVDLIEDEFDVAFRMGK-LEDSGFVSRKLMDVEMGTYASPSYLDRHGHPTHPKEL 188 Query: 187 DKHNLIT 193 + H +T Sbjct: 189 EHHQCLT 195 >gi|260769792|ref|ZP_05878725.1| transcriptional regulator [Vibrio furnissii CIP 102972] gi|260615130|gb|EEX40316.1| transcriptional regulator [Vibrio furnissii CIP 102972] Length = 304 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LTE G Sbjct: 10 IRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEQQMGVTLLIRTTRSLKLTEAGKTFF 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ + + + G++RI + LG+ ++ + +F+ YP +++ L Sbjct: 70 AQCEAALHSIDQAVLAAVDDTEAVRGQIRINSVGGYLGEEIVADLITQFMARYPHVRVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ D D A R+ K ++ S + RKL+ + M YA+P YL P +EL Sbjct: 130 DLSSHRVDLIEDEFDVAFRMGK-LEDSGFVSRKLMDVEMGTYASPSYLDRHGHPTHPKEL 188 Query: 187 DKHNLIT 193 + H +T Sbjct: 189 EHHQCLT 195 >gi|300313746|ref|YP_003777838.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076531|gb|ADJ65930.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AA+ L + +++S+ + LE +G++L R R +++T +G + Sbjct: 7 IRAFARVVEAGNFTRAADSLDMPNATLSKLVRELEAHLGVRLLQRTTRRVSVTPEGLDYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + LE + P GKLRI +++L L +FL YPDI I L Sbjct: 67 EKTGRLVRDLEDIDTSFNAARGNPRGKLRIDVGGSTARDVLIPALPDFLARYPDISIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ +D+ D DC IR P+ +SSL+ R++ M A P YLK P EL Sbjct: 127 VSDRPVDLIGDSVDCVIR-GGPLDNSSLVARQIGQARMVTCATPAYLKQFGVPAYPDELK 185 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 + H LI++ L P+ F + Sbjct: 186 NGHRLISY--LSPQSGRAFPF 204 >gi|238763939|ref|ZP_04624896.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] gi|238697907|gb|EEP90667.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] Length = 291 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 6/256 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F VAR GS AA +L + Q+++ R+I+ LE +G KLF R + TL+ Sbjct: 1 MNWDDARFFLAVARKGSLRQAAHELQVDQATVGRRITTLEQVLGAKLFIRTPKAFTLSPL 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + + ++ + S + G + +A T + + + LK+ YP+I Sbjct: 61 GEQVLAEVMVMENAAQSIGRKAANSDSRLQGMVSLAATDTIAEAFVLPALKQLHQHYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ DI+ + D AIR +P + L+ ++L TI M YA+ YL C EP Sbjct: 121 TLRVLTGIDISDIAYNSVDLAIRGVRP-DDNELVIKRLATIEMGLYASRDYLARCGEPQR 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + H L+ F P+ +W + P + L+ NS + G GI Sbjct: 180 GEHFRGHELLLF----PRQSVPRHWQDLCGETLENPHV-VLESNSQQLLRAAARKGVGIG 234 Query: 243 LLPDYIVKDNPNLVRI 258 LL ++ ++ LVRI Sbjct: 235 LLSCFLANNDDELVRI 250 >gi|255589997|ref|XP_002535152.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] gi|223523923|gb|EEF27233.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] Length = 311 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 22/297 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA SF+ AA +L ++ S+IS+ I LE VG+ LF R+ RG++LTE G + Sbjct: 7 DGVTTFVAVAEEKSFSAAAVRLGVTPSAISQTIRNLERRVGLALFNRNTRGVSLTEGGEQ 66 Query: 66 -LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 RV V + T+ EL S KP G LRI +LQ L+ FL YPDI++ Sbjct: 67 YFERVVPAVRELVAATE-ELGADSDKPMGLLRINVARAGQMVVLQPILRGFLDRYPDIRL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCR 178 L ++N IDI D IR +L++R +V I + A+P YL+ Sbjct: 126 DLSVENTLIDIVGRGFDAGIRF------GNLVERDMVAIKVGPSISAWILASPDYLRRFG 179 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 EP +EL +H + F +E +++ D I L VN +++Q + G Sbjct: 180 EPRHPRELIEHECVCFRLQSSGQIERWSFQKD-DETIELAVNGRLIVNDSATLVQAGLDG 238 Query: 239 SGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + + V+ + LVR++ D P FT+Y Y + + KL+A +++ Sbjct: 239 IGIVYMINGYVERLVERGRLVRLLTDWSPTLPGFTLY--YADRRRVPAKLRALIDYL 293 >gi|254525103|ref|ZP_05137158.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219722694|gb|EED41219.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 301 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 5/289 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ R+F V SFT AA+QL L +S++S I+ LE +G +L R R ++ T G Sbjct: 5 DRFRIFTRVVECASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + ++E + ++ +P G L+I +G+ +L L +F YP +++ Sbjct: 65 FHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRILAPALPDFFARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D D +R+ + + SSL+ R L + AAP YL+ P + Sbjct: 125 LGMTDRAVNLIEDGCDAVLRVGQ-LSDSSLVARTLGQLDFVNVAAPAYLREHGAPQHPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + + +E + W + P ++VNS + + CV G G+ +P Sbjct: 184 LQQHRAVNYASPTTARVEAWEWQDGSQLRM-LPMPGWVRVNSAEASIACCVAGLGLLQIP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 Y V+ + LV ++ + V P + + F ++ Sbjct: 243 RYDVQAELQSGALVEVLPQHVAQPLPVTLLQPHRQHRAQRTQVFIEWLL 291 >gi|121601186|ref|YP_992570.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|121229996|gb|ABM52514.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] Length = 327 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 33 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 92 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E + + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 93 LYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 152 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 153 LGVTDRAVNLIEERVDCVLRVGT-LSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 211 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 212 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 268 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 269 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 318 >gi|330985973|gb|EGH84076.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 301 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 11/255 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ PSG LRI + G +L L F L +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL QSS LI R + + AAP YL P + Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGTPAHPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +L HN + F P E W T P GE + + N+ + Q Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239 Query: 238 GSGIALLPDYIVKDN 252 G G+ +LPD +V+ + Sbjct: 240 GMGVVMLPDALVQRD 254 >gi|260778230|ref|ZP_05887123.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606243|gb|EEX32528.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 294 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 11/243 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F VA S F+ AA+QL S S +SRQ+S LE+ VG+ L R R ++LT+ G Sbjct: 4 FEGINEFVAVAESQGFSSAAKQLGCSTSHVSRQVSRLESRVGVALLARTTRMVSLTDAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R E+ + L+ +L ++ SG LR++ +N + L F YP++ + Sbjct: 64 IYYRQCKELVNGLQHANEQLSSQHIQLSGTLRVSAAGAFAENYVAPALMAFAKKYPNLTV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + + ++ D D AIR + + S L+ RKL M A A+ YL+ +P + Sbjct: 124 ELDFNTRMVNFIEDGIDFAIRYGR-LNDSGLVARKLADRPMAAVASRDYLEQFGQPTHPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L +H+ I + +WL + +P+ R+ + N+ ++++ C G GIA Sbjct: 183 QLKQHSCI--------IANNDHWLFEHEGKPLNAVRVHGRWRSNNSTAVIEACEQGLGIA 234 Query: 243 LLP 245 LP Sbjct: 235 YLP 237 >gi|257488029|ref|ZP_05642070.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330891090|gb|EGH23751.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|331008699|gb|EGH88755.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 301 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 11/255 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ PSG LRI + G +L L F L +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL QSS LI R + + AAP YL P + Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGTPAHPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +L HN + F P E W T P GE + + N+ + Q Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239 Query: 238 GSGIALLPDYIVKDN 252 G G+ +LPD +V+ + Sbjct: 240 GMGVVMLPDALVQRD 254 >gi|154244831|ref|YP_001415789.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158916|gb|ABS66132.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 316 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 141/289 (48%), Gaps = 8/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ L+ F V R+G T AA+ + + S++SR+I+GLE + +LF R G T Sbjct: 18 LDWNDLQAFLAVVRAGRLTAAAQAMRVDHSTLSRRITGLEAALKTRLFERRPAGYVPTAA 77 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L V + + +L + + +G +RI T G L + F + ++ Sbjct: 78 GERLVAEAEAVESIVIGMRAKLTDQVLGLAGSVRIGTPEGFGTYFLTPQMIHFCARHREL 137 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q++L+ + + + +S AD I + +P + L +L M YA+ HYL S Sbjct: 138 QVELVANPRTVSLSKREADIGIMMARP-EEGRLHATRLTDYEMGLYASRHYLAQHAPIAS 196 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ +H I + DL+P ++A +D+ + P+ +++++ ++ + G G+ Sbjct: 197 RADIRQHAFIGYIDDLLPTAAH--GYVAELDKAL-NPQ---MRMSNIITQLVAATNGGGL 250 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + +LVR++ + I + + + ++ +++A +FI Sbjct: 251 CMLPCFMAGTSADLVRLLPEEIAITRSYWLVIHSDVRELARVRAVIDFI 299 >gi|86137120|ref|ZP_01055698.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] gi|85826444|gb|EAQ46641.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] Length = 299 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 136/283 (48%), Gaps = 10/283 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++ F VA GS + AA QL SQ ++ R I LE ++ +LF RH RGL L++ G Sbjct: 8 DWSLIQSFLAVADCGSLSAAARQLSRSQPTLGRHIQSLEADLNQRLFERHPRGLQLSQAG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + E+ ++ ++ S + +G +RI ++ +LL L + P I+ Sbjct: 68 TALLPMAREMQAQMYRLSLQAAGQSEELAGTVRITASVFAAHHLLPPILADIRREEPGIE 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+ ++ ++ AD A+R+ +P Q +I + + + + +AA YL P + Sbjct: 128 LELVPTDESENLLFRAADIALRMYRPTQ-LDVITQHIADLPLGIFAAKSYLARRGRPSTS 186 Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL +H+L+ + DLI M W VDR R C +Y +++ G GI Sbjct: 187 EELWQHDLVGYDNNDLILNTMRQMGW--QVDRSAFAMR--CDNQTTYWQLVRA---GCGI 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + + + + + V P+ ++ A++ T +++ Sbjct: 240 GFCQSGVARADDCVAELDLGVEIPALPIWLTAHSAMRETPRIR 282 >gi|206580873|ref|YP_002238143.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206569931|gb|ACI11707.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 305 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 5/246 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A + SF AA L +S S++ + ++ LE ++G++LF R R ++LT +G+ Sbjct: 6 SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + EL S +P+GKLRI+ + +G LL L F LYP +++ L Sbjct: 66 LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFTRLYPQVELDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +++ + D AIR + + S LI RKL A+P YL P S +EL Sbjct: 125 DFSDRLVNLIDEGVDVAIRSGE-LADSRLIARKLGGFRFVLCASPAYLAEYGPPDSPKEL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLP 245 H I F P W R G+ R S + VN+ + ++ G GIA +P Sbjct: 184 AAHKCIFF--RFPSTGLIQPWELRDMRLTGDFRAASVVTVNNIEAAIRLSAAGMGIAYVP 241 Query: 246 DYIVKD 251 D++V++ Sbjct: 242 DFVVRE 247 >gi|157371302|ref|YP_001479291.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323066|gb|ABV42163.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 300 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +LRVF VA GSF A++ L + ++++S I LE E+G +LF+R R + LT G L Sbjct: 6 RLRVFIQVAEVGSFIRASQILLMPKTTVSAAIQQLEHEMGTRLFHRTTRRVQLTSDGELL 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + G+L + + + ++ L +F L YP+IQ+ L Sbjct: 66 LEKARSLLFDVQALESLFHRQNGPIGGRLTVDVPSRIARRMIVPALPDFFLQYPEIQLFL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ + DC +R+ + SSL+ + L + M A+P YL+ P +L Sbjct: 126 SASDRSVDLIQEGIDCVVRVGN-LSDSSLVSQPLGRLSMINCASPDYLQRYGTPEHPDQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + H ++ + + + W ++ + R++ V +Y+ C++G G+ Sbjct: 185 EDHWVVGYAQPTLAGADSWQWQQDGQHFEKTLPN-RVTVNNVENYIGC---CLVGLGMMQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +P + V+ DN +L I+ P+ ++ YP + + +L AF + Sbjct: 241 IPRFDVQHYLDNGSLCEILPQARPPAMSMALLYPHRRQRSARLTAFSEW 289 >gi|91209364|ref|YP_539350.1| transcriptional regulator YcjZ [Escherichia coli UTI89] gi|117622574|ref|YP_851487.1| putative transcriptional regulator [Escherichia coli APEC O1] gi|218557216|ref|YP_002390129.1| transcriptional regulator, lysR family [Escherichia coli S88] gi|237707712|ref|ZP_04538193.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA] gi|331645475|ref|ZP_08346579.1| LysR-family transcriptional regulator [Escherichia coli M605] gi|91070938|gb|ABE05819.1| hypothetical transcriptional regulator YcjZ [Escherichia coli UTI89] gi|115511698|gb|ABI99772.1| putative transcriptional regulator [Escherichia coli APEC O1] gi|218363985|emb|CAR01650.1| putative transcriptional regulator, lysR family [Escherichia coli S88] gi|226898922|gb|EEH85181.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA] gi|331045637|gb|EGI17763.1| LysR-family transcriptional regulator [Escherichia coli M605] Length = 322 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 30 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 89 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 90 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 149 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 150 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 209 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 210 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 267 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P+ +V+ ++ L++++++ P+F Y+ Y Sbjct: 268 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 300 >gi|290510939|ref|ZP_06550308.1| transcription regulator protein, MDR efflux pump cluster [Klebsiella sp. 1_1_55] gi|289775932|gb|EFD83931.1| transcription regulator protein, MDR efflux pump cluster [Klebsiella sp. 1_1_55] Length = 294 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 141/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF AAE L L S+++ I LE + ++L R R ++LT +G + Sbjct: 7 MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGLQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E ++ L ES +P G+LR+ + ++ +L +F YPDI + + Sbjct: 67 AQCREILALIEHSESSLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR+ + + +SSL+ R L A+P+YL+ P S + L Sbjct: 127 VSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGRFRWVTCASPYYLREYGVPSSPEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 KH + + + ++F ++ T P+ VN ++ C+ G G+A L Sbjct: 186 KHRAVHYFSGQARRADEFRFVRHGETFSVPVS----GNAAVNETGLYIKMCLAGFGLAQL 241 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + IV D+ LV ++ D P V YP + ++AF ++ Sbjct: 242 AENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 290 >gi|154244279|ref|YP_001415237.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158364|gb|ABS65580.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 305 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 143/289 (49%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AA+ + + ++++++ + LE + +LF R R +T+T G+ + Sbjct: 7 MRAFVRVVETGNFTRAADLMDMPKATLTKHVQSLEQHLRTRLFNRTTRRVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ L + P G+LRI + L LL L +FL YPDI + + Sbjct: 67 ERALLILNDLDELDGSLSTAQALPQGRLRIDLSPSLATRLLIPALPDFLARYPDIALDVG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC IR+ + I +L+ R++ + A AAP Y+ P +E + Sbjct: 127 CTDRPVDLLGENVDCVIRVGE-IHDPNLVARRIGELSFEAVAAPAYIARYGVPSHPKEFE 185 Query: 188 K-HNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H ++ + + F ++ + V G+ R++C N+Y++ + G G+ Sbjct: 186 AGHVVVRYFSALTGRYHPFEFVRGSEVVEVTGDYRMACNDGNAYIAA---GLAGLGVIQS 242 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + V++ + LVR++ D + ++ YP + + +L+ F +++ Sbjct: 243 PVFQVEEHLASGALVRVLTDWTAGAMPIHVVYPPSRHLSNRLRVFVDWV 291 >gi|299134751|ref|ZP_07027943.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2] gi|298590561|gb|EFI50764.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2] Length = 295 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 10/262 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD++R+F VARSG AA++L L+ ++++RQ+S LE E+ +L R G TLT Sbjct: 1 MDWDRVRIFLEVARSGQILGAAKKLGLNHATVARQLSALEREMKTRLVKRDTTGCTLTRS 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L +V + +L +S + +G +R+ +G LL L ++P++ Sbjct: 61 GEALMATAEKVESEFLRVGSQLASTSDRVTGTVRVGAPDGIGNYLLAEQLGALAAMHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL+ + +S AD AI + +P + LI KL + YA+ YL S Sbjct: 121 IVQLVPLPRTFSLSKREADIAIMVERP-KEGRLITTKLTDYSLSLYASKQYLDRYPPIQS 179 Query: 183 IQELDKHNLIT-FGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H IT D + + ++ ++ TV R C S + ++ G G Sbjct: 180 EADLAGHLFITQVSDFVYSRALDYSSYFDTV----MSRRYEC---GSVVGQVEAVRAGHG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDV 262 I +L DY + P L R++ ++ Sbjct: 233 IGILHDYATRRYPELRRLLPEI 254 >gi|160897802|ref|YP_001563384.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363386|gb|ABX34999.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 326 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 145/291 (49%), Gaps = 13/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF VVAR F AAE+L S + +S++I LE E+G+KL +R R + +TE+G + Sbjct: 30 EDLRVFTVVARKSGFAAAAEELGASPAYVSKRIRLLEQELGVKLLHRTTRRVAVTEEGER 89 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ E+ + +P G LR++++ G++++ L + +P +Q++ Sbjct: 90 VFHWAQRILDDMDQLMQEVAITRSEPRGLLRVSSSFGFGRHVIAPALSRLVERHPGLQVR 149 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D++ + D +R+ I + LI R+L H AAP YL P + E Sbjct: 150 LDVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPAYLARRGTPRTPAE 208 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L H+ + I + + F W +++ L N+ ++Q+ V G GIAL Sbjct: 209 LSAHDCLA----IKERDQAFGVWRLRAGAAEQSVKVTGPLSANNGEMVVQWAVDGRGIAL 264 Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290 + V + R+++ + P + V+ YP L+ + K++ F+ Sbjct: 265 RSLWDVGAHLQAGRLVQ--LLPEWRQEANVWAVYPTRLQLSAKVRVCVEFL 313 >gi|113869640|ref|YP_728129.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113528416|emb|CAJ94761.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 315 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V GSF AA+QL +S + ++R ++ LE+ +G +L R R L+LT+ G Sbjct: 6 SMRVFSKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + + S SG LR+ T + G +LL L F LYPD+ + Sbjct: 66 LQRCQQILEDVEEAESVVTARSQSLSGTLRLVTPVMFGLHLLPELLARFQQLYPDVVFDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 IL ++++DI + D A+ L S L+ R L++ + A+P Y+ EL Sbjct: 126 ILSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLLSAEVILCASPGYVAAHAPIRHAHEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIAL 243 H I +P ++ L P GE P S L ++ Q + G+A+ Sbjct: 186 SHHRCIAMR--LPSAEHEWTLLG----PEGEVTVPIRSGLLCSNAELAHQAALADMGVAM 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 L Y+ + N LV ++ P V YP K++AF +F+ Sbjct: 240 LSSYLARPNIESGKLVHVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLL 290 >gi|212709847|ref|ZP_03317975.1| hypothetical protein PROVALCAL_00896 [Providencia alcalifaciens DSM 30120] gi|212687658|gb|EEB47186.1| hypothetical protein PROVALCAL_00896 [Providencia alcalifaciens DSM 30120] Length = 299 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 129/268 (48%), Gaps = 8/268 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+ VF V SFT AA++L+++ S++SR + LE ++G+ L R R + LT Sbjct: 1 MKATSDEAHVFIEVVEQKSFTKAADKLNIANSAVSRTVKKLEEKLGVNLLKRTTRQIDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G + V +++T + EL ++ P G LRI + +LL + F YP Sbjct: 61 AEGELYFQRMKNVLQEMQTIEDELLDTQSSPKGLLRIDAATPVTLHLLIPFVAIFRQQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ L+ +++ D AIR + + SSL R L + A+P Y++ + Sbjct: 121 NIELSLVSSETFVNLIERKVDIAIRAGQ-LADSSLRARPLFNSYRKIVASPRYIETAEKI 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ +L H +TF + P + W + + + NS +++Q CV G G Sbjct: 180 TSVADLRHHTCLTFTE--PTSLN--TWPVNTENGLLIDVADGISSNSGETLLQLCVNGEG 235 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP 265 IA L D++V + L+ ++ D I P Sbjct: 236 IACLSDFMVNEGIKRGELIELLPDEILP 263 >gi|307552215|gb|ADN44990.1| transcriptional regulator [Escherichia coli ABU 83972] gi|320197246|gb|EFW71862.1| Transcriptional regulator, LysR family [Escherichia coli WV_060327] Length = 297 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P+ +V+ ++ L++++++ P+F Y+ Y Sbjct: 243 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 275 >gi|299069854|emb|CBJ41135.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 297 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L F VAR SFT AA QL +S S++S + LET +GI+L R R ++ TE G Sbjct: 5 NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTVRALETRLGIRLLTRTTRSVSPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + +++ + E PSG +RI TT + LL L + L YPD++ Sbjct: 65 ERLLQSIAPRFEEIDAELAAISELRDTPSGTVRITTTDYAIRTLLWPKLSKVLHDYPDVK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ + D DI + D +RL + + R + M AP YLK P + Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAARIAPDLRMVIVGAPAYLKLHPAPKTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L H I +P + W L R I L N I+ + G G+A Sbjct: 185 QDLTAHRCINL--RLPTRGGVYAWELKKGQREIQVRVDGQLTFNGVYEILDAALSGYGLA 242 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273 +P+ + + + R ++ED P+F Y Y Sbjct: 243 YMPEDLAQPHVAAGRLKWVLEDWF-PTFPGYHVY 275 >gi|307730425|ref|YP_003907649.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584960|gb|ADN58358.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 312 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + + YP++Q++L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYRERYPEVQVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D A+ L + S L+ ++L + A A+P YL+ P + +L Sbjct: 126 TLAQRMPDLLDEGFDVALTLATGLPDSGLVSQRLGSAFSIACASPAYLEKHGVPQTPSDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 H + ++ W T D P GE I + QVN ++ G GI Sbjct: 186 AHHTCL---QIVTPVFPPDKW--TFDGPNGEETITLGPATFQVNVAEAMAVAATSGMGIG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 L+P Y LV ++ + + +Y YP R ++ K R W Sbjct: 241 LIPLYSAISGLRKGELVWLLPEYTSQEMNLYALYPS-----------RQYLDAKIRTW 287 >gi|242241012|ref|YP_002989193.1| LysR family transcriptional regulator [Dickeya dadantii Ech703] gi|242133069|gb|ACS87371.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703] Length = 298 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 21/300 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++++ F V GS T AA QL + S ISR I LE ++G+ L +R R L+L+ Sbjct: 1 MKITLEEMQAFIAVVDCGSVTAAAGQLGQTASGISRAIGRLEGKLGVTLLHRTTRRLSLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G +V +E + ++ +PSG+LRI Q+++ + EF YP Sbjct: 61 EEGQIFLLQARDVIQSVEAAEEQMALRREQPSGRLRINAASSFMQHVIVPLIPEFRRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D+ ID+ + D AIR+ ++ SS+ R L + A+P YL+ P Sbjct: 121 QIMLELNTDDVFIDLLEQHTDVAIRI-GALRDSSIHARLLGCTRLRVLASPDYLRRRGTP 179 Query: 181 LSIQELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 L +++L H L+ F +L P E ++ PI +P ++ S +++ Sbjct: 180 LRVEDLANHTLMGFTQSESLNLWPLRSEMGDYY-----PI-QPAVAA----SNGEMLRLL 229 Query: 236 VL-GSGIALLPDYIVKDNPN---LVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L G GIA L D++ +++ LV+I+ ED + V Y G++ +F +F+ Sbjct: 230 ALHGEGIARLSDFMTREDVAAGLLVQILPEDTLDVRLPVNAVYYRNTALAGRIVSFLDFL 289 >gi|16263460|ref|NP_436253.1| putative transcriptional activator [Sinorhizobium meliloti 1021] gi|14524153|gb|AAK65665.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 383 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 5/249 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +RVF VA+ SFT AA QL ++ +++R +S LE +G++L R R ++LT G Sbjct: 3 DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRSVSALEQSLGVQLLLRTTRQVSLTSAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + +L+E +G +RI + LGQ LL + F +P + Sbjct: 63 AVYAARVEPLIRQFDQVRDDLREEQGDVAGLIRINAPLSLGQQLLPDIVSGFRAEHPQVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L ++ IDI + D A+R+ + + S I RK+ + A+P YL P + Sbjct: 123 VSLSLTDRFIDIVSERFDLALRVSEAPRDRSTIWRKVCRVRRILVASPGYLAIFGTPETP 182 Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H I + + I + E N T G+ L N+ I + G G+A Sbjct: 183 DDLSRHGCIAYDEEAISETWELTNGGRTRKALAGK----VLAANNGELIAKLVEDGQGLA 238 Query: 243 LLPDYIVKD 251 LLP +IV D Sbjct: 239 LLPHFIVGD 247 >gi|146291803|ref|YP_001182227.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563493|gb|ABP74428.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] Length = 329 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 138/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI +L + F+ ++P + ++ Sbjct: 64 FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I + +D+ D A + + + L+ R + T + YA+P YL P + QE Sbjct: 124 VISSAESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAAHGIPKTPQE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 ++ HN+ F K + W+ + E R+ NS +++ + G GI Sbjct: 184 IESHNVSLFRLSNGKIFNEL-WIGLEE----EVRVRGNFCSNSVEVAVEFALQGRGIVYA 238 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V + LV ++ ++ + YP + + F +FI Sbjct: 239 PTEVVAEFVETGELVTLLPEIDAHQGECFLAYPSRRYVSLASRRFIDFI 287 >gi|325121474|gb|ADY80997.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 306 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 139/285 (48%), Gaps = 10/285 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ + GS A +L+L+ ++SR+++ LE +G++L R R ++LT +G Sbjct: 6 ELAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLTSEGEVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + + S P G LR+ + G++ + + F +YPD+ +QL Sbjct: 66 FENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYPDVDVQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ + D +IR + I S LI +KL A+P YLK +PL+ +L Sbjct: 126 HLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKTAGQPLTPHDL 184 Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 +H I +I + + NW + + + ++ L N + + + G GI + Sbjct: 185 TQHQCI----VIRQNDSAYGNWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGYGILMR 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ V + LV+++ED TP VY Y E L + K+ F Sbjct: 241 AEWDVAKYLRSGRLVQVLEDYETPPADVYAVYLERLNLSPKVAHF 285 >gi|330809390|ref|YP_004353852.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377498|gb|AEA68848.1| Putative transcriptional regulator protein, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 298 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 20/296 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L+ F VA +G + AA +L +S+S +SR++ LETE+G++L R RG LTE Sbjct: 1 MDIEELQTFVEVADAGGISPAALRLGVSKSIVSRRLVRLETELGVQLLARSTRGAALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G+ + V +I++ + ++ P+ G+LR+A + G L E Sbjct: 61 GATFRDYAARV-----CAEIDIAKETILPAGALRGRLRVAVPLSFGPTHFAPVLAEMARR 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + IQ ++ +D+ + DCAIR+ +Q S+LI R++ I+ A+P Y+K Sbjct: 116 HPQLHIQTCYSDRFVDLITEGYDCAIRVGY-LQDSNLIARRIGPIYGKLLASPDYIKAHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + +E+ H + + M D + + TV RP G + ++ ++++ G Sbjct: 175 SPETPEEIVAHQALMQSTEAWQFM-DRDKIITV-RPQGR-----FKADNGIALVAAATAG 227 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA LPD + + + LV IM P Y P K++ + Sbjct: 228 LGIAYLPDCLTFEHVASGALVPIMTRHPPPPAGAYVIRPSGQHPARKIRVLTELLI 283 >gi|227884691|ref|ZP_04002496.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|301045913|ref|ZP_07193099.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|227838292|gb|EEJ48758.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|300302089|gb|EFJ58474.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|315295128|gb|EFU54463.1| LysR substrate binding domain protein [Escherichia coli MS 153-1] Length = 315 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 23 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 83 ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P+ +V+ ++ L++++++ P+F Y+ Y Sbjct: 261 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 293 >gi|254250705|ref|ZP_04944024.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124879839|gb|EAY67195.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 305 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G + Sbjct: 7 MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V +++ + + ++ P G+L++ + + ++ L FL +PDI ++L Sbjct: 67 ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ + DC +R+ + S +I +++ ++ +P Y C EP ++ +L Sbjct: 127 VTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCGSPAYFARCGEPQTVDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 +H + + W VD GEPRI + VN + ++ V G G+ Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+ + L ++ D P+ + YP KLK F +++ Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290 >gi|330909576|gb|EGH38090.1| LysR family transcriptional regulator YhjC [Escherichia coli AA86] Length = 323 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M YA+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNYASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ S L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|288960083|ref|YP_003450423.1| transcriptional regulator [Azospirillum sp. B510] gi|288912391|dbj|BAI73879.1| transcriptional regulator [Azospirillum sp. B510] Length = 306 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 12/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F V GS + A L +S + +S +I LET +G++L R R L TE G Sbjct: 5 ENMRIFVRVVELGSLSAAGRNLRMSPAMVSHRIQQLETHLGVRLLNRTTRQLQATETGMD 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ EV +E Q + S PSG +R+ + G+ +L + +F +P ++++ Sbjct: 65 FYQSCLEVLEAVERAQSSIAAGSGVPSGSVRVTAPLGFGRRILAPLVPDFCAAHPLVEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ + D A+R+ ++ SS + RK+ + AAP YL P + + Sbjct: 125 LRLSDHLLDLLREAVDVAVRMAV-LKDSSFVVRKIADVRRVLVAAPAYLSERGRPSTPAD 183 Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN L+ F + + W + P+ P + + + + G GIA Sbjct: 184 LSGHNCLLLRF-----PGTQQYQWSVLEGGEPVKLPVSGRFDADDGDVLTGWALDGRGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + P + V D + L ++ D T+ YP K++AF + + K Sbjct: 239 MKPLWEVADHLASGALAPVLPDFPPEPVTLAVLYPHRALVPAKVRAFADHMVPK 292 >gi|188534529|ref|YP_001908326.1| transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188029571|emb|CAO97448.1| transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 297 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 6/275 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHALKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ LE L + + SG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIADLEQELESLVQLNGPASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN ++I D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVNIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAVNPVPATP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ + N + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVRVEGQVTFNLLAERIDAVLSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 +P+ +V+D + LV++++D P Y YP Sbjct: 243 CVPENMVQDYIKSGELVQVLQDWCPPFSGYYLYYP 277 >gi|70728671|ref|YP_258420.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68342970|gb|AAY90576.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 299 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 124/272 (45%), Gaps = 9/272 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F V+ +GSFT AA+QL S+ +S++IS LE + L R R L LT G+ Sbjct: 2 DDLAAFAVLVEAGSFTLAAQQLGCSKGQLSKRISALEARYAVVLLQRTTRRLDLTAAGAA 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E L G +R+ + LG+ G L EF YP +QI+ Sbjct: 62 LLPQAQALVAQVERAHQALARLKDDMVGPVRLTVPVSLGETFFDGLLLEFSRHYPQVQIE 121 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+N D++ + D A+R + L+ R L+ H A+P YL+ EP + QE Sbjct: 122 LDLNNSYRDLTREGFDLAVR-SEVANDQRLVARPLLAWHEMTCASPAYLEQYGEPRTPQE 180 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L H + L WL + R+S N Y + + ++G+GIA L Sbjct: 181 LAGHRCL----LNSHYSGREEWLYHQRHELLRVRVSGPFASNHYNLLKKAALVGAGIARL 236 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 P Y++ + L ++ D T S +Y + Sbjct: 237 PSYVLHSELADGRLRWLLRDYQTRSMPMYLVH 268 >gi|107023025|ref|YP_621352.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686733|ref|YP_839980.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105893214|gb|ABF76379.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652448|gb|ABK13087.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 305 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G + Sbjct: 7 MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V +++ + + ++ P G+L++ + + ++ L FL +PDI ++L Sbjct: 67 ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ + DC +R+ + S +I +++ ++ +P Y C EP ++ +L Sbjct: 127 VTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCGSPAYFARCGEPRTVDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 +H + + W VD GEPRI + VN + ++ V G G+ Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+ + L ++ D P+ + YP KLK F +++ Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290 >gi|298717381|ref|YP_003730023.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1] gi|298361570|gb|ADI78351.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1] Length = 303 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 146/295 (49%), Gaps = 18/295 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V +GSFT AA+ L L+++ +S I LE E+G+ L R R ++ T+ G + Sbjct: 6 RLGIFVAVVEAGSFTGAAQTLGLTKAVVSFNIKQLEEELGVSLLIRSTRRVSATDTGERF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ H E+ +++ G LRI TT + G ++ L +F + +P ++I Sbjct: 66 YDRCLKLLHDAESALEDVRGDHAGLCGSLRITTTHEYGARVIVPALADFAVKHPQLRIHH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +K+ D+ D AIRL + SS R + + A AAP YL ++ SI++L Sbjct: 126 VSSSKNDDLIAGRFDVAIRLGH-LADSSHHARLIDQFDILAVAAPCYLHTLKDA-SIRDL 183 Query: 187 DKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSIMQYCVLG 238 + + I + +W T+ P GE + + + +S S++ + + G Sbjct: 184 SQ---LASAKWIAHSRLSTPLSWQVTM--PEGESVLMSAYQPAMVTADSASSLLAFALAG 238 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +G+A+LP ++V+D LVR++ D P +Y YP K++ F +F+ Sbjct: 239 AGVAILPVWLVQDEIEKGGLVRLLPDNQFPRQGIYALYPNTRHVPEKVRTFIDFL 293 >gi|224825339|ref|ZP_03698444.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224602260|gb|EEG08438.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 320 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 13/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 +WD ++ F VAR+ + + AA++L + +++SR+I LE +G LF + + G LT Sbjct: 11 LNWDDIKFFLEVARTHTASSAAKRLGVDYTTVSRRIRALEQALGALLFEKSRSAGFVLTV 70 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L R + L+ E+ + SG +RI T G + + F YPD Sbjct: 71 DGQQLLRYAEAMESALQAACEEVSGTGFALSGHVRIGCTEGFGSGFVTPQISRFQDRYPD 130 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ I++S AD AI L +P + + KL + YA P YL Sbjct: 131 ITVDILPVPHFINLSRREADIAITLERP-ERGPYVCSKLCDYRLLLYATPDYLARHPPIR 189 Query: 182 SIQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++L H IT+ D PK + + L P L+ S ++ Q + G Sbjct: 190 QREDLAGHRFITYVDDLAFSPKLLYMDDVLPGAKSP--------LRSTSVIAQYQAALQG 241 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++V D+P L R++ + + + + Y E L+ ++ +++ Sbjct: 242 RALAILPCFLVGDDPRLTRVLPEQVAVTRQFWMYYSEDLRKLKRITLAADYL 293 >gi|307304416|ref|ZP_07584167.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306902618|gb|EFN33212.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 307 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 10/287 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L F VA SFT AA +L ++QS++S I LET +G++L R R + +TE G Sbjct: 5 DFNDLLWFLAVAEERSFTRAAAKLGITQSTLSHTIKRLETRMGLRLLTRTTRSVAVTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R + + L KPSG ++I + ++L+ L+ LL YPDI+ Sbjct: 65 ERLLRSLAPRISAIRDEIAALMAFRDKPSGSVKITLSDHALESLVWPKLQPVLLEYPDIR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L DN +I D D IRL + ++ + R + A A+P YL + P Sbjct: 125 LELSRDNGFRNIVEDGFDAGIRLGESVEKDMIAVRIGPDWRLLAVASPDYLADRPLPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 QEL +HN I + +++ ++ E R+ L NS ++ + G G Sbjct: 185 QELIQHNCINSR----QATGGGHYVWEFEKNGQELRVRVDGQLTFNSSYPMVDAALKGHG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 IA LP+ +V + LV ++E P Y YP N+ K Sbjct: 241 IAYLPEDLVAGHIAAGRLVALLEPWSPPFAGYYIYYPSRHHNSPAFK 287 >gi|251791409|ref|YP_003006130.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247540030|gb|ACT08651.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 297 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 6/287 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L F +VA+ SFT AA +L +SQS++S + LE +G++L R R ++LTE G Sbjct: 5 NFSDLISFRMVAQEKSFTRAAAKLGISQSALSHAMRSLEERLGVRLLTRTTRSVSLTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L S ++LE +L E KP+G +R+ +L LK FL YPDI Sbjct: 65 ERLLGNISPSLNELEYALEDLGEMRDKPAGNIRLTAGEHAVNFVLWPVLKPFLSQYPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI + D +RL + + + R + M +P Y + P + Sbjct: 125 LEITVDNTLTDIVHERFDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFAHHPRPDTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q L +H I +P F W + D R I L N+ + + G G+A Sbjct: 185 QSLQQHRCINM--RLPTLGGLFAWEFSRDGREIRVRVDGQLTFNNLQHRIDAALSGLGLA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P+ ++ L++++E P Y YP ++T F Sbjct: 243 YVPEDTIRSAVAEGRLIQVLEAWCEPFPGYYLYYPSRKQHTAAFSLF 289 >gi|149909023|ref|ZP_01897682.1| Hypothetical transcriptional regulator, LysR family [Moritella sp. PE36] gi|149808034|gb|EDM67977.1| Hypothetical transcriptional regulator, LysR family [Moritella sp. PE36] Length = 300 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 8/283 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE +++S +S++IS LE ++G++L +R R LTLTE G Sbjct: 5 DDLVLFTQVIEQGSFSKVAEANKVTKSVVSKRISRLEEDLGVQLIFRTTRKLTLTEAGEM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + S +G ++++ G+ LL + EF +P + + Sbjct: 65 LFYRAKGIAQTAKNAFDTVTSYSETLAGHIKMSVPTISGELLLARAVAEFCEKHPGLTVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++N +D+ D D IR ++ SSLI R + A+P YL EP ++ Sbjct: 125 MSMNNDFVDLVADGYDLVIRTGH-LEDSSLIARHIFNSRWMICASPEYLAQQGEPQFPEQ 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +N + + + FNWL T D ++S N+ +++ Q + G G+A L Sbjct: 184 LAPYNCLGY---TCQTSGAFNWLFTRDDATYNVKVSGNFSSNNAVALKQAALAGKGLAYL 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 P +V DN LV ++ +Y YP K K++ Sbjct: 241 PKCLVYNELDNGKLVEVLSQQTAKVIGIYAVYPYTRKPAKKVQ 283 >gi|170720217|ref|YP_001747905.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169758220|gb|ACA71536.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 302 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 22/301 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V GS + AA+QL LS+ +SR ++ LE VG +L R R L+LT G + Sbjct: 5 NAMRVFVTVVDLGSQSAAADQLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTAAGLE 64 Query: 66 LHRVTSEVYHKLETT---QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 H LE Q +Q+ + P G LRI+ + GQ L + ++ YP + Sbjct: 65 ---TLPRCRHLLELAGDLQAAVQQPADAPRGALRISVSTSFGQAQLVDAVAAYVRRYPGV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L + ++ +++ + D AIR + +LI R+L AAP YL P Sbjct: 122 KVELQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCAAPAYLHEHGTPQR 180 Query: 183 IQELDKHNLIT---FGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++EL +HN +T FG + W V +PI P + N +++ + + G Sbjct: 181 VEELSQHNCLTHAYFGHSV--------WHFEVGGQPITVPVEGNISANEAMTLQKAALAG 232 Query: 239 SGIALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +G+A+LP Y LVR++ + Y L+ +F+ + R Sbjct: 233 AGVAMLPTYQAAAAMRTGELVRLLPYARPQELNLNAVYTSRKHMPATLRTMLDFLAQRFR 292 Query: 296 D 296 D Sbjct: 293 D 293 >gi|77458663|ref|YP_348169.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382666|gb|ABA74179.1| putative LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 143/291 (49%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SGSFT AA+ L+L ++++S+ I LE +G++L R R LT+T G+ + Sbjct: 7 IRTFARVVESGSFTKAADSLNLPKTTVSKLIGQLENHLGVRLLQRTTRRLTVTADGASYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++T ++ H+L+ ++ P GK+R+ L+ L +F YPDIQ+ L Sbjct: 67 QLTQQLLHQLDDIDQGFSQAQGLPRGKIRVDIGGSTATMLVIPELPKFFERYPDIQVDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR P+ +L R+L + A P YL+ P +L Sbjct: 127 VSDRPVDLISERVDCVIR-GGPLTEQTLAVRRLGEVSWTTCATPDYLQRHGTPSHPLDLA 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H LI + G ++P + ++ G+ IS + N++L+ + G GI Sbjct: 186 SHQLIAYRSASTGRILPSNFQRNGERHQIE---GKGLISVNESNAHLAA---GLAGLGII 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V+ + LV I+ED P++ + YP + +++ F +++ Sbjct: 240 HTFSYTVRTAIERGELVPILEDWRPPAYPFHVLYPPNRHLSNRVRVFIDWL 290 >gi|291619338|ref|YP_003522080.1| PtxR [Pantoea ananatis LMG 20103] gi|291154368|gb|ADD78952.1| PtxR [Pantoea ananatis LMG 20103] Length = 313 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 20/296 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F + SGS + AA QL ++Q +ISR++ LE +G+KL R L LT+ G + + Sbjct: 16 MHTFIRIVESGSLSAAALQLGITQPTISRRLQSLEQGLGLKLILRTTHALKLTDDGERCY 75 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + EL + P G LR+ GQ+ L L F+ YP ++I+ + Sbjct: 76 AQARQLLATWHALEDELTGAGSDPVGILRVRAPHAFGQDQLVTPLVNFMRRYPRLRIEWM 135 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ D + DCAI++ + S++ L + AAP L+ Q Sbjct: 136 LNDRTPDFVAENVDCAIQVGA-LTDPSVVAVLLAEVPRIVVAAPALLQ--------QYPP 186 Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGI 241 + + GDL + F N +A + GEP + L +S ++ + + G G Sbjct: 187 INQVAQLGDLPWLALTSFYRNEIALQHKDKGEPMNLPIVPLLSSDSLFAVRKAALAGLGT 246 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 A+L ++++++ NL+++M + P V+ YP A +L AF F +KA Sbjct: 247 AILSTWVIQEDLAQGNLIQLMPEWQAPPLPVWLTYPWASYYPARLTAF--FAMIKA 300 >gi|326317404|ref|YP_004235076.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374240|gb|ADX46509.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 295 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 19/294 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ LR F +AR+G+ AA + + ++++R+I LE ++G LF R A G LTE Sbjct: 1 MDWENLRYFLELARTGTLAAAARRTGVEHTTVARRIQALEKQMGESLFAREAGGHRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQE---SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G L +ET + ++ + + P+G +R+ T G +L +L L Y Sbjct: 61 GRHL----LPAVEAMETAVLGVERVRPTGIGPAGLVRVGATEGFGTQVLAPHLARLTLQY 116 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + + L+ + + +S AD I L +P + + ++ KL + Y YL R Sbjct: 117 PHLSVDLLALPRMLHLSRREADIVISLERPTRGAVIVS-KLADYTLRLYGQKEYLAR-RP 174 Query: 180 PLSIQE-LDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P++ +E L H +++ D L K ++ + L +R + S + + Sbjct: 175 PIARREDLRHHAFVSYVDDLLFTKELQFLDQLVPPER-------FAFRSTSVAAQYEAVR 227 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+ +LP ++ +P L R++ D + T + P K + +A +F+ Sbjct: 228 AGAGLGVLPAFLAGSDPLLERVLPDEARFTRTFWMSMPAEAKYQARTQAVWDFL 281 >gi|152994718|ref|YP_001339553.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835642|gb|ABR69618.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 297 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 12/296 (4%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M +++L+ VF V GS T AA+ + +S+ +S + LE ++G+KL R R L Sbjct: 1 MEVSFEQLKSMVVFAQVVEQGSLTAAAKFMGISRGVVSYHLKKLEEQLGVKLLNRTTRSL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G ++ + + ++++++ +P GKL+I+ ++LG ++ L EF Sbjct: 61 SLTETGEAYYQRCRAIAFQAHEANLQIEKAKQEPEGKLKISCPVNLGLQVIVPALNEFRR 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYP I++ + L ++ ++I D D AIR P+ S L KL T +P Y + Sbjct: 121 LYPLIELNVSLSDEVVNIIKDGVDLAIR-GAPLLDSGLQASKLKTFETCLCGSPEYFRRR 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +EL H+ + + P + L+ D+ + N+ + + Sbjct: 180 GRPTKPEELYDHDWVVY---TPAA--NTVHLSQGDKSFSLSVHGGVSTNNAAARTIFLEG 234 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI +P Y N +L RI+ D VY +P + KL+ +F+ Sbjct: 235 GNGIGRIPMYDALPRIANGSLERILSDYKCTGIDVYAVFPPGTAESKKLRLLLDFL 290 >gi|224823750|ref|ZP_03696859.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224604205|gb|EEG10379.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 318 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 138/295 (46%), Gaps = 17/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF A +GSF+ AA +L +S ++IS+ I+ LE E+ ++LF R R LTLTE G + + Sbjct: 7 LMVFMTTAENGSFSDAARKLGVSPAAISQSIARLEQELEVRLFNRTTRQLTLTEDGRRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ +L+ S +P+G LRI+ G++ + + EF +P I++ Sbjct: 67 AQCRGPVNNLDAAINQLKASRDEPAGHLRISLPNSFGRHFILPLMGEFCQRHPKIRVFFG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD+ D+ D D +R+ + S L R L + ++ AAP Y P +L Sbjct: 127 LDDHFSDLIEDGYDVGVRVGM-MPDSRLSARHLAQLPLYTVAAPEYWSKNGRPQKPDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGI 241 HN I + P W D GE RI L+VN ++ + LG G+ Sbjct: 186 NHNCINY--QFPTSGRLCKWEFERD---GE-RIP-LEVNGIYTLNDIEAVCEMARLGFGV 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 A +P + + L ++ D I+ ++Y C+P + + F +++ K Sbjct: 239 AQVPGHEAMPYLRSGELEAVLTDFISLERSIYICFPHREHIAPRTRVFVDYVAEK 293 >gi|153829226|ref|ZP_01981893.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] gi|148875264|gb|EDL73399.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] Length = 309 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 6/293 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++ +F V GSFT AAE L +++S +S QI+ LE V ++L R R ++LT Sbjct: 14 MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 73 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G ++ + + + E + + + SG +RI TTID+G LL L EF YP Sbjct: 74 TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + LD+ D+ D IR+ + + SSSL+ R + + YA+ YL+N Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 192 Query: 181 LSIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +IQ+L++H+ + L +P V + S NS L +M G Sbjct: 193 HTIQDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGL 250 Query: 240 GIALLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ + +++ P+ LVR+ D S T+ YP +++ F +++ Sbjct: 251 GVGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 303 >gi|302187121|ref|ZP_07263794.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae 642] Length = 309 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 15/288 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA GSFT AAE+L+L+ S+IS+ I+ LE + +LF R R L+LTE G +R Sbjct: 12 VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE +I L + +P GK+RI G+ + + +F+ +P +Q + Sbjct: 72 CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131 Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D + D +R+ +++ + T + AAP Y+ EP ++ +LD Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCAAPEYVNQYGEPKTVSDLDA 191 Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I +G IP + +R I P I+ V + + G GIA L Sbjct: 192 HRCIGYGQNDGMAIPWYFKGRQ-PGDRERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247 Query: 245 PDYIVKDNPN---LVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286 P ++V+ + N LV ++ D+ T P V+ EAL L A+ Sbjct: 248 PTWLVQAHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295 >gi|295095771|emb|CBK84861.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 296 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 131/276 (47%), Gaps = 11/276 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA QL +SQS++S + LET + ++L R R + TE G Sbjct: 5 NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLETRLEVRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L S ++E L+++ +P+G +R+ +L LK F+ YPDI Sbjct: 65 EQLFMRLSPHLLEIEQELTALRDTRDRPAGNIRLTAGEHAMSAVLWPVLKPFMAQYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI D +RL + + + R + M + YL+ P + Sbjct: 125 VEVTVDNGLTDIVDGRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSAEYLQRFGVPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 ++LD+H I +P + W +R E R+ L +NS + G G Sbjct: 185 EQLDQHRCINM--RLPTRGGLYAW--EFERDGRELRVRVDGQLILNSLPQRIDAAENGLG 240 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +A +P+ V+D LVR++E P+FT Y Y Sbjct: 241 LAYVPEDAVQDALAESRLVRVLE-AWCPAFTGYHLY 275 >gi|227114358|ref|ZP_03828014.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 295 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 17/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF + GSF AAE L +S +++Q++ LET +G++L R R +LT+ G + + Sbjct: 7 MSVFVKASELGSFAAAAEALGISPQMVAKQVAWLETRLGVRLLNRTTRKQSLTDIGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E +E V PSG +++ + G +LL + +L YPD QI L Sbjct: 67 ERCKVVLAEAEDADAVAREMQVTPSGMIQVNAPVTWGSHLLAPFITHYLARYPDTQIALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D + + IR+ + + SS++ L + + A A+P YL P + L Sbjct: 127 LNDRLVDPIEEGFEVIIRIGE-LADSSMVAWPLQSYSLIACASPDYLAREGVPDTPASLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +H + +G + W+ D RP G L N + +++ + G GI Sbjct: 186 RHACLIYG--LRTAATSCRWVFQKDGKSEEIRPQGR-----LFANDWNALLHAAIEGYGI 238 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P+ +++ D LV+++ D P+ V+ P ++ K+K F + + Sbjct: 239 TLGPEVVLRKEIDRGRLVQVLSDYNGPARPVHVMVPMGRRSAVKIKTFVDAV 290 >gi|163795192|ref|ZP_02189160.1| Transcriptional regulator [alpha proteobacterium BAL199] gi|159179590|gb|EDP64119.1| Transcriptional regulator [alpha proteobacterium BAL199] Length = 305 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 137/290 (47%), Gaps = 22/290 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V GSF+ AA +L LS+S++S+QI+ LE +G +L R R L LTE G++L+ Sbjct: 12 FARVVEEGSFSKAAVRLGLSKSAVSKQIARLEDRLGTRLLNRTTRRLALTEAGTRLYDRC 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + E + E +PSG LR++T + GQ L ++ L +P + ++L+L++ Sbjct: 72 QRIVAEAEAAEAEAGSMQTEPSGLLRVSTGMSFGQEHLAAHVPALLERHPGLSLELVLND 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D A+R+ + + S LI R+L + AAP YL P ++L H Sbjct: 132 RIVDLVEEGYDVALRIAE-MPDSPLIARRLAPVRRILAAAPSYLARRGIPALPKDLQDHG 190 Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIG-------EPRISCLQVNSYLSIMQYCVLGSGIA 242 + + C W L D G PR+ N+ ++ SGI Sbjct: 191 CLGYSYSAGGC----TWTLVGTD---GTHHSHRFRPRVLANNGNALAAMAAAG---SGIV 240 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +P +++ LV ++ D P +Y YP K++AF +F Sbjct: 241 QMPTFMLSRYLKEGTLVPVLADFEPPPVGLYAVYPPGRPLAAKVRAFIDF 290 >gi|255320475|ref|ZP_05361656.1| transcriptional regulator, LysR family [Acinetobacter radioresistens SK82] gi|262378370|ref|ZP_06071527.1| transcriptional regulator [Acinetobacter radioresistens SH164] gi|255302447|gb|EET81683.1| transcriptional regulator, LysR family [Acinetobacter radioresistens SK82] gi|262299655|gb|EEY87567.1| transcriptional regulator [Acinetobacter radioresistens SH164] Length = 300 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G +++ ++ + + + S KP G ++++ + + QN + L +FL YP Sbjct: 61 DIGMDIYQHAQDMMNAAQAAHDLIDHLSSKPRGVIKVSLPVSIAQNEIAKILPDFLKQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QL + N+ ID+ + D A+R+R + + +LI R+ I H A+ YL Sbjct: 121 EIKVQLSVTNRRIDVINEGIDVALRVRFNLDNDPNLIIRQFQRIEQHLVASQAYLNEYGN 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238 +L +H +++ +I ++ L + + +I+ + + S L ++ Q G Sbjct: 181 LTHPDQLAEHRILS---MIDDHLDQQLTLHDRENKSRKFKINPVVMGSDLMMLAQLARQG 237 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD + D + LVR++ D TP + YP G+L + R FI Sbjct: 238 CGIALLPDSVTADLVRHGELVRVLPDWNTPHGVFHAVYP---SRRGQLPSVRVFI 289 >gi|229515331|ref|ZP_04404791.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21] gi|229348036|gb|EEO12995.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21] Length = 296 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ +F V GSFT AAE L +++S +S QI+ LE V ++L R R ++LT +G Sbjct: 4 ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLTTEG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + + E + + + SG +RI TTID+G LL L EF YP + Sbjct: 64 DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLSEFYKQYPKVN 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LD+ D+ D IR+ + + SSSL+ R + + YA+ YL+N +I Sbjct: 124 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 182 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L++H+ + L +P V + S NS L +M G G+ Sbjct: 183 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 240 Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ P+ LVR+ D S T+ YP +++ F +++ Sbjct: 241 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 290 >gi|229521864|ref|ZP_04411281.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80] gi|229340789|gb|EEO05794.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80] Length = 296 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ +F V GSFT AAE L +++S +S QI+ LE V ++L R R ++LT +G Sbjct: 4 ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLTTEG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + + E + + + SG +RI TTID+G LL L EF YP + Sbjct: 64 DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LD+ D+ D IR+ + + SSSL+ R + + YA+ YL+N +I Sbjct: 124 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 182 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L++H+ + L +P V + S NS L +M G G+ Sbjct: 183 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 240 Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ P+ LVR+ D S T+ YP +++ F +++ Sbjct: 241 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 290 >gi|184156728|ref|YP_001845067.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332873139|ref|ZP_08441096.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|183208322|gb|ACC55720.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|322506617|gb|ADX02071.1| transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323516494|gb|ADX90875.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332738651|gb|EGJ69521.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 18/294 (6%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ FY+ VA+ SF+ A QL L +S+++ I LET G++LF+R R ++LT+ Sbjct: 2 DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + E + +Q G L+I+ + ++ L +F YPDI Sbjct: 62 GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + D+ DC +R+ + + +SSLI R + + M A+P YL++ P Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGVPEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L++H LI + + + +F + + +D S L VN+ + + G Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQGGIVMMD--------SALSVNNTEAYIAAACAGL 232 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI LP Y V+D LV ++ PS + YP +L+ F N++ Sbjct: 233 GIIQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286 >gi|167581443|ref|ZP_02374317.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 300 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGIPETLADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W D + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|66046836|ref|YP_236677.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63257543|gb|AAY38639.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 302 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 142/290 (48%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGS T A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + + Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQNPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ + +G W D+P+ ++ N+ + + + G GI Sbjct: 183 DLHTHDCLPYGH-----SRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITY 237 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 238 LPTFIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|86136307|ref|ZP_01054886.1| probable transcriptional regulator [Roseobacter sp. MED193] gi|85827181|gb|EAQ47377.1| probable transcriptional regulator [Roseobacter sp. MED193] Length = 299 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + LR+F +VA GSF+ A + S++SRQIS LE + +L R R LTE G Sbjct: 3 DLNLLRLFVLVADQGSFSAVARSTRATPSAVSRQISRLEENLNTRLLQRTTRRQELTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ ++T + + S PSG LRI DL LL L EFL YPD++ Sbjct: 63 QVYLSHARQIIEDVDTARQAVSRLSNAPSGVLRITAEADLALTLLSPVLPEFLERYPDLR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL + D+ D AIR+ + SSLI ++L A+P YL+ P Sbjct: 123 VQLHTSSTMEDLVSRGIDVAIRVGH-LSDSSLIAKRLTMSRSLLVASPEYLEQDIPPQQP 181 Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++L H+ ++F DL+ + + V P+ P +Q +S + + + G G Sbjct: 182 EDLRNHSCLSFKVDTDLVTWRFKSGEEVTNV--PVTGP----IQASSLVLLKEAAKSGLG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293 IA+LP ++++ + LV ++ + P+ T + YP K++ +F+ ++ Sbjct: 236 IAMLPVWMLRAELKSGTLVPVLPGFPLDPAATPISAVYPSGRNLASKVRVLIDFLAIR 293 >gi|172060998|ref|YP_001808650.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993515|gb|ACB64434.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 301 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LRI+ G+ + + EF +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ EL Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W + R+ ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEGDKVVSIRVNGTMECSDGAVLHEWCLAGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V + LV +++ P ++ +P+ Sbjct: 242 WWEVGGDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274 >gi|296102273|ref|YP_003612419.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056732|gb|ADF61470.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 301 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 131/284 (46%), Gaps = 8/284 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSFT AA+ L++ +++S+ + LE + I+L +R R + T +G++ + Sbjct: 7 MRAFTRVVETGSFTRAADSLNMPIATLSKLVKALEAHLEIRLLHRTTRRVVTTPEGAEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +E + S P G LR+ +++L L +F+ YPDI+I L Sbjct: 67 EKAVRVLIDIEDIDTSFRVSHATPKGHLRVDIGGSTARDVLIPLLPDFMQRYPDIRIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ +D+ DC IR P+ S+LI R L M A P YLK P QEL Sbjct: 127 VADRPVDLISGNVDCVIR-GGPLNDSTLIARHLGDADMVTCATPGYLKKHGVPAYPQELR 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 + H LI++ L P F + + E IS L VN + + V G GI Sbjct: 186 NGHKLISY--LSPVTGRPFPFRFRKGGEVQEIGISHYLGVNESNAHLAAAVAGLGIIQTF 243 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y K L I+ D ++ + YP+ T +LKAF Sbjct: 244 TYSAKTYLQAGTLQEILSDWHPAAYPFHVVYPQNRHLTHRLKAF 287 >gi|253689589|ref|YP_003018779.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756167|gb|ACT14243.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 293 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V +GSF+ A+ +L + Q ++S+ I LE ++ L R RGLT TE G + Sbjct: 7 LETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLATPLLLRSTRGLTPTEAGQHFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S L Q ++ S SG+LRI + + + L EF+ +P + + +I Sbjct: 67 EQISPALKMLGEAQEQVVSGSAALSGRLRICAPVTFARLHIMPRLHEFMAEHPQLNVDVI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID+ + D A+RL + ++ SSLI ++L + M A P Y P S L Sbjct: 127 LDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGAPASPDVLA 185 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H + + G+ + + + T P G R+S + + + G+G+A+ Sbjct: 186 AHPAVIYLQGERTNRWIFSRDGAQTTVFPKGRIRVSAAE-----GVRAAVLSGAGLAVAS 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ ++ +V ++ ++ YP + + + F +F+ Sbjct: 241 EWMFAPELESGQVVTALDSWALGKMDLWAVYPGGRMTSARARIFTDFV 288 >gi|224824615|ref|ZP_03697722.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224603108|gb|EEG09284.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 27/296 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L V GS + AA + + I R++ LE +G KL R R +TLT++GS Sbjct: 6 QLETLVAVVAHGSLSAAARIEGVVPAVIGRRLDALEERLGAKLLVRTTRSVTLTQEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + +L + + S + G LR++ G+ + + F L+PD+++ L Sbjct: 66 YEESLRILAELAEAEAAVASGSARARGHLRVSAPAGFGRRHVAPHAASFQQLHPDVKVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ D DCAIR+ + SSL+ +L + AAP YL P ++ +L Sbjct: 126 DLSDRLVDLVRDRVDCAIRI-SDLSDSSLVAIRLAENYRVVVAAPSYLARHGTPRTLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RIS-CLQVNSYLSIMQYCVLGSGIA 242 +HN ++ G+ + W T D GEP ++S L+ N + + + G G+ Sbjct: 185 TQHNCLSLGE-----SQSRGWTFTRD---GEPVNLKVSGTLECNDGAVLHDWALQGYGLT 236 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + VKD+ LV +++ +P + VY P+ R F+ L+ R Sbjct: 237 WRSLWEVKDDLSEGRLVTVLDSFSSPDYPVYAMVPQ-----------RKFLPLRVR 281 >gi|158424294|ref|YP_001525586.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158331183|dbj|BAF88668.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 305 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 146/289 (50%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SGSFT AA+ L L ++++S+QI LET + +L +R R +T+T G+ + Sbjct: 7 MRAFVRVVESGSFTRAADILALPKATLSKQIQQLETHLSTRLLHRTTRQVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ L + P G+LRI + L +L L +F YP+I I + Sbjct: 67 ERALAILTDVDELDGSLSTNLTCPRGRLRIDISPSLATGILMPALPDFFSRYPEIHIDIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC IR+ + I++SSLI R++ ++ A AAP Y+ E ++ + Sbjct: 127 CTDRPVDLVGENVDCVIRVGE-IRNSSLIARRIGELNFAAAAAPSYIARHGEIQHPKDFE 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 K H ++ + F+++ + +G ++ N+Y+S + G G+ L Sbjct: 186 KDHVMVRYFSATTAHYYAFDFIRDAEEVEVLGRYSVALNDGNAYVSA---GLAGLGVILC 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++++ D LVR++ + T ++ YP + + +L+ F +++ Sbjct: 243 PIFMMQEHLDAGTLVRVLPEWHTQPMPIHVVYPPSRHISNRLRVFVDWV 291 >gi|317053002|ref|YP_004119356.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316953329|gb|ADU72800.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 297 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 130/293 (44%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +VAR SFT AA +L +SQS++S I GLE + +L R R + TE G Sbjct: 5 NFNDLIYLVMVAREQSFTRAAAKLGVSQSALSHSIRGLEERLNTRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + +E ++L + KPSG +RI + L LK FL YP++ Sbjct: 65 ERLIQNVGPMIADIEKALLQLSDEQGKPSGNIRITAGEHALSSTLWPLLKPFLQAYPEVN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +DN DI D +RL + ++ + R M AAP Y P + Sbjct: 125 VELSVDNTLTDIVSGRFDAGVRLGEQVEKDMVAVRIGPDWRMVVVAAPEYFAQHGLPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 EL HN I +P ++W D E R+ L N+ S + + G G Sbjct: 185 YELQNHNCINM--RLPTLGGIYSWEFYKDGK--EIRVKVEGQLIFNNLASRVDAALTGMG 240 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A +P+ V+ D L ++D P Y YP ++T AF I Sbjct: 241 VAYVPEDCVRKYIDEGKLQIALDDWCAPFAGYYLYYPSRKQHTA---AFSKLI 290 >gi|237799061|ref|ZP_04587522.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806204|ref|ZP_04592908.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021915|gb|EGI01972.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027317|gb|EGI07372.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 302 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 144/290 (49%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+E+L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASEKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++E + + + +P G LR++ + L L +FL Y D+ + Sbjct: 64 SYYESSLRLLAEVEQVEQGITGQNHEPRGTLRLSAPLSFAVAHLGCLLPQFLKRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GLLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H+ + +G W + +S ++VN+ + + G G+ Sbjct: 183 DLHAHDCLPYGH-----SRQVQWRFQNAGKVTSLSVSGRMRVNNGELLKDAALAGLGVTY 237 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +I+ + +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 238 LPTFIIGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFVEFL 287 >gi|26246310|ref|NP_752349.1| putative transcriptional regulator YcjZ [Escherichia coli CFT073] gi|26106708|gb|AAN78893.1|AE016756_76 Hypothetical transcriptional regulator ycjZ [Escherichia coli CFT073] Length = 322 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 30 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 89 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 90 ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 149 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 150 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 209 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 210 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 267 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P+ +V+ ++ L++++++ P+F Y+ Y Sbjct: 268 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 300 >gi|127513206|ref|YP_001094403.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126638501|gb|ABO24144.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 304 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 21/283 (7%) Query: 1 MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+ D D ++ F V + GSFT AA++L LS +S+ +S LE + ++L R R + + Sbjct: 1 MALDRIDTMKAFTAVVQEGSFTKAADRLGLSSQLVSKYVSQLEEHLKVRLLNRTTRRVNV 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 TE G +V +E L S SG L+++ + G + L L +F + Sbjct: 61 TEAGRAYFERCQQVLIDIEEMDNALTNLSETASGLLKVSAPMSFGIHHLPSALVQFQQQH 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PD+++ + L +K +D+ D D A+R+ + + SSSLI +KL I + A+P YL E Sbjct: 121 PDVRLDITLTDKKVDLLEDGVDVALRIGQ-LTSSSLIAKKLTPIKLVVCASPEYLAERGE 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQ 233 P + +L HN + F ++ L GE S L++ S L+ +++ Sbjct: 180 PKTPADLIHHNYLHFS---------YSDLGAAFGRFGE-HFSALKIPSDLACNNGDMLVE 229 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + G GI + P ++V + L I+ D F +Y Y Sbjct: 230 AAIAGRGIVVQPTFLVSKALRSGKLKAILTDYTPEPFGLYAVY 272 >gi|325127538|gb|EGC50463.1| putative lysR-family transcriptional regulator [Neisseria meningitidis N1568] Length = 299 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289 >gi|15601809|ref|NP_233440.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587164|ref|ZP_01676939.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|153817652|ref|ZP_01970319.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|153821727|ref|ZP_01974394.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|227812622|ref|YP_002812632.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|229505809|ref|ZP_04395318.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229510336|ref|ZP_04399816.1| transcriptional regulator [Vibrio cholerae B33] gi|229517532|ref|ZP_04406977.1| transcriptional regulator [Vibrio cholerae RC9] gi|229605342|ref|YP_002876046.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254850216|ref|ZP_05239566.1| transcriptional regulator [Vibrio cholerae MO10] gi|255746212|ref|ZP_05420159.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|262158702|ref|ZP_06029816.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|298499824|ref|ZP_07009630.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9658503|gb|AAF96952.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548603|gb|EAX58655.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|126511808|gb|EAZ74402.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|126520723|gb|EAZ77946.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|227011764|gb|ACP07975.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|229345568|gb|EEO10541.1| transcriptional regulator [Vibrio cholerae RC9] gi|229352781|gb|EEO17721.1| transcriptional regulator [Vibrio cholerae B33] gi|229356160|gb|EEO21078.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229371828|gb|ACQ62250.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254845921|gb|EET24335.1| transcriptional regulator [Vibrio cholerae MO10] gi|255735966|gb|EET91364.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|262029582|gb|EEY48232.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|297541805|gb|EFH77856.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 301 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELGVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPAYFTLCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQELARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|221215627|ref|ZP_03588589.1| LysR substrate binding domain protein [Burkholderia multivorans CGD1] gi|221164456|gb|EED96940.1| LysR substrate binding domain protein [Burkholderia multivorans CGD1] Length = 347 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SFT AA L +++SS + + LE + ++L R R ++LT G+ + Sbjct: 7 MQVFTRVVETKSFTGAAASLDMTRSSATTIVQNLEAHLKVRLLNRTTRNISLTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + S P GKL++ + +G+ ++ L EF YPDI + L Sbjct: 67 ERCLRVLADIADAESSFS-SIAAPKGKLKVDMSGAIGRLVVVPALHEFHSRYPDIDLMLG 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +KD+D+ D DCAIR+ P+ S+L+ R++ A+P YL P +I++LD Sbjct: 126 VGDKDVDLVQDSVDCAIRM-GPLADSTLVARRIGVSDFVTVASPEYLARYGIPRTIEDLD 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + M + +++ +PI S L N + +Q + G G+ P + Sbjct: 185 NHTAVNYFSSRTGRMVEIDFVVD-GKPIDVKMRSRLAANDGEAYLQCGLRGHGLIQTPHF 243 Query: 248 IV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + LV ++E F + YP + +++ F +I Sbjct: 244 LALPHLKSGALVEVLEQWRPTPFPISAVYPRNRHLSPQVRVFVEWI 289 >gi|56695133|ref|YP_165480.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56676870|gb|AAV93536.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 137/285 (48%), Gaps = 14/285 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++ F VA +GS + AA QL SQ ++ R + LE +G+ LF RHARGL L+ G Sbjct: 9 DWSLIQSFLAVAETGSLSAAARQLDRSQPTLGRHVQALEQALGLSLFDRHARGLKLSADG 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +++ + + + + + S +G +RI ++ ++L L + P I+ Sbjct: 69 ARILPLAQQAHRAMTAISVTAAGQSQSLAGTVRITASVFASHHILPPILADIRAAEPAIE 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+ + ++ AD A+R+ +P Q ++ R + + + A AA YL+ P Sbjct: 129 LELVPSDTTENLLFRAADIAVRMYRPRQ-VDIVARHIGDVPLCACAATSYLERKGRPTRA 187 Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240 ++L +L+ + +I K M+ W T R S ++ ++ + Q G G Sbjct: 188 EDLLDFDLVGYDADPIIVKTMQALGWPVT--------RHSFAMRCDNQSAYWQLIRAGCG 239 Query: 241 IALLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLK 284 I IV +P LV ++ ++ P ++ P+A++ T +++ Sbjct: 240 IGFGQRSIVAADP-LVEVLPFELPVPPLEMWLAAPQAMRLTPRIR 283 >gi|328542435|ref|YP_004302544.1| LysR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326412182|gb|ADZ69245.1| LysR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 304 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V S F+ AA ++ S++ +S+ I LE E+G++L R R ++LTE G Sbjct: 6 RMRCFLQVVESNGFSAAAREMGRSKALVSKYIGELEDELGVRLLNRTTRQISLTEVGEAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +++ +++ Q +Q + + G+LR++ +G LL + EFL+ P+I + L Sbjct: 66 YKEAADILQRIDDLQASVQSTHREARGRLRVSAPRSMGDGLLNRAVMEFLVAEPEITLDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ ++ SSLI RK+ A P + P +L Sbjct: 126 RLDDRFVDLVEEGFDVAIRV-TDLEDSSLIARKIAPFRTVIVATPEVIAAHGVPQVPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + I + K NW VD I P ++VNS + + G P Sbjct: 185 AQRPCIVDTNYRFKA----NWAFMVDGERISVPVKGRVEVNSASAARDAALCNLGFLRTP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V + LV ++E +Y YP +GK+++F +F+ Sbjct: 241 LMFVNADIEAGRLVAMLEAYELDGPAIYAVYPHRRHLSGKVRSFVDFL 288 >gi|91786428|ref|YP_547380.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gi|91695653|gb|ABE42482.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 303 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 103/194 (53%), Gaps = 1/194 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F VAR+G F+ A+ ++ + +++SR+++ LET +G++LF+R R + LTE G Sbjct: 5 ESITAFVSVARAGGFSAASREIGVPLATLSRRVAELETSLGVRLFHRSTRQIVLTESGIG 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L+ + + P G+L I + G+ LQ EFL YPDI ++ Sbjct: 65 YFAACQHILEYLKDAEETVVGEYRSPKGELSITAPVGFGRQHLQPVATEFLRAYPDIDLR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ +D+ ++ D A+R+ + S + R + I M + AP YLK P E Sbjct: 125 LLLVDRMVDLVGEHLDLAVRIST-LSDSGQVARSVGEIKMIVFGAPGYLKARGMPKHPSE 183 Query: 186 LDKHNLITFGDLIP 199 L +H+ I++ L P Sbjct: 184 LVRHSCISWTSLGP 197 >gi|331651203|ref|ZP_08352228.1| LysR-family transcriptional regulator [Escherichia coli M718] gi|331050944|gb|EGI22996.1| LysR-family transcriptional regulator [Escherichia coli M718] Length = 311 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 17/279 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 19 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 79 ERIIACLEPRIDELEQELESLIQQNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIS 138 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVL 237 EL H I +P ++W +R E + ++V+ L+ + + Sbjct: 199 HELQNHRCINI--RLPTAGGLYHW--EFER---EGKALRVKVDGQLTCSPLPERIDAALS 251 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G GIA +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 252 GFGIACVPEDMVQEYITSGRLIQVLQE-WCPTFPGYYLY 289 >gi|319781980|ref|YP_004141456.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167868|gb|ADV11406.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 297 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 146/304 (48%), Gaps = 19/304 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + ++L F V +GSFT AAE+L ++++ +S+Q++ LE E+ L R R + TE Sbjct: 4 SINLNRLAYFATVVDAGSFTRAAERLGITKTVVSQQVARLEAELRTTLLVRTTRRVEPTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G LH + +E E+ E++ + +G LR++ + D G +L F +P Sbjct: 64 AGRLLHARCVLILRDVEEAVAEVGEANAEVAGVLRVSASNDYGAIVLAPIAARFRQRFPA 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++L++ + ID+ + D +IR+ + SS R++ T A+ + R Sbjct: 124 CGVELVISDAIIDLIGNKIDLSIRV-GWLDDSSQQARRIGTFRQILVASRDFAAGIR--- 179 Query: 182 SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYC 235 +DK ++ L+ + + F W T R EPR L+ +NS ++++ Sbjct: 180 ----VDKPEDLSSLPLVANAVLRKPFTWNFT--RGDSEPRTITLREAFSINSTPAVLEAT 233 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 + G G+A+LPDY+V + LV ++ D PS ++ YP A K+ F + + Sbjct: 234 LAGGGLAVLPDYLVVNYLSQGRLVHVLPDWALPSGGIHVVYPAARFRPQKVTQFVSMLTE 293 Query: 293 KARD 296 RD Sbjct: 294 HIRD 297 >gi|221069509|ref|ZP_03545614.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220714532|gb|EED69900.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 293 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 20/289 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F + GS AA+ L LS +++S+Q+ LE ++G L R R ++LT+ G + Sbjct: 7 LRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++ S + G+LR+ + + L L F+ +P +Q+ L Sbjct: 67 AECCRLLDGFDMLEQSVRAQSGQVMGRLRVNAPLSFALSTLAPLLARFMQRHPLLQLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D D +IRL + SSLI R+L ++ A+P YL+ P S EL Sbjct: 127 MEDRLVDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASTAELR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H L+ + LA D + P + VN+ L + + G GI LP + Sbjct: 187 DHALLNYS------------LAQADDGLQVPSEARASVNNSLMLRELLEAGLGIGALPSF 234 Query: 248 IVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + P + + ++D P VY YP K++AF +F+ Sbjct: 235 LAR--PAIAQGQLEALSLQDWAEPPRHVYVVYPTQRHLLPKVRAFVDFL 281 >gi|295676164|ref|YP_003604688.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436007|gb|ADG15177.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 307 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 29/315 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L VF V SGS T AAE+L + S +SR ++ LE ++ L R R L LT Sbjct: 1 MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEQKLDTALVRRTTRRLHLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G R + LE + + +PSG+LR+ + + ++ F LYP Sbjct: 61 EEGDAFLRRARAILDALEEAEESVARGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L + +D+ D AIR+ +Q S+L R L + A+P YL EP Sbjct: 121 EIRLELTSTERIVDLLEQKVDIAIRI-GALQDSTLHARALGESRLRVLASPAYLAEHGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIG----------EPRISCLQVNS 227 ++ L H LI F P+ + + A R G EP I+ +S Sbjct: 180 TTLDALRAHRLIGF--TAPEHLNRWPLTAGGRRTKRANGQRDEAALLKIEPSITA---SS 234 Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNT 280 ++ Q + G GIA L D++ + P L ++ D P VY+ ++ Sbjct: 235 GETLRQLALSGWGIACLADFMTAADVREHRLVPILGNLLVDERQPVHAVYY---QSASLA 291 Query: 281 GKLKAFRNFIFLKAR 295 G+++ F +FI + + Sbjct: 292 GRVQCFLDFIAARVK 306 >gi|261400530|ref|ZP_05986655.1| transcriptional regulator, LysR family [Neisseria lactamica ATCC 23970] gi|269209792|gb|EEZ76247.1| transcriptional regulator, LysR family [Neisseria lactamica ATCC 23970] Length = 303 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 20/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + +L+ L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 +P + + +D + G+ ++ ++ L + + G+ Sbjct: 186 G---------LPAVLPTYTNQQKLDITRKSDGKKYRLELTPVIRTDNTLMMREMIKAGAC 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I P + V+ + +LVR++ + TP+ + Y + + K+++F +F+ Sbjct: 237 IGYQPFWAVEHDLRCGSLVRLLPEYATPTVRLNAVYADRAFLSAKVRSFIDFL 289 >gi|153008129|ref|YP_001369344.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560017|gb|ABS13515.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 300 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 126/276 (45%), Gaps = 7/276 (2%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GSF AA +L ++ S++S ++ LE +G++L R R + TE G +L + ++ Sbjct: 19 GSFRGAARELAIAPSAVSHAVATLEDSLGVRLLARTTRSVAPTEAGRQLLERLAPALEEI 78 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 +S +PSG LRI Q ++ L EF YPDI + L ++N DI Sbjct: 79 NAALGAAVDSRDRPSGVLRITAPYVAAQLVIAPRLGEFARAYPDITLDLRVENGFTDIVA 138 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 D +RL + +++ + R + AAP+Y N P+ ++L +H I Sbjct: 139 AGFDAGVRLGESLEADMIATRLTGNVRAAIVAAPNYFDNRSAPVEPRDLLQHACIRH--R 196 Query: 198 IPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253 P + W + E I L VN I++ + G+G+A L + V D N Sbjct: 197 FPSG-RTYRWEFEKAGEVQEIAIEGPLIVNDDRVILEAALNGTGLAYLFEAYVHDALANG 255 Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LVR++ED P +Y YP + L+AF +F Sbjct: 256 RLVRVLEDWCQPFAGLYLYYPSRRQMRPALRAFIDF 291 >gi|89901310|ref|YP_523781.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346047|gb|ABD70250.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 299 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 13/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++ F V +GSF AA+ L +S++++SR + +ET +G++L +R R L+LT++G Sbjct: 6 EMQTFNAVVDAGSFVKAADALGMSKAAVSRYVVDMETRLGVRLLHRTTRRLSLTDEGQIF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + E+ +L + E+ S SG LRI G L F + +P++++ + Sbjct: 66 YVRSKELLAELAEAEDEITSRSDAASGLLRINAPFTFGVLHLAPLWGAFRVRHPNVKLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D AIR+ +++S+L+ ++L T M A+P YLK P EL Sbjct: 126 TLADRLVDLVEEGYDVAIRIAN-LENSTLVSKRLATTRMVLCASPQYLKLHGTPKHPGEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIAL 243 H +I++ K F P+G + C+ N+ + + GI L Sbjct: 185 ADHAVISYSYWSTKDEWPFK------GPLGPVSVKTNPCIHTNNGDTCRAAALASQGIIL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V D+ LV +M + + +Y YP + K++A +F+ Sbjct: 239 QPSFLVGDDLASGALVELMPEFRSLELGIYAVYPSRKHVSPKVRALIDFL 288 >gi|148257375|ref|YP_001241960.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146409548|gb|ABQ38054.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 305 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L V VA SGS + AA L +S + +++ ++ LE +G KLF+R R LT+TE G + Sbjct: 8 LEVLSKVAGSGSLSGAARLLGMSPTMVTKHLAALEARLGAKLFHRTTRRLTITEAGRRYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V E + + V+P G LR+ + G + L F LYP + ++L Sbjct: 68 DLAERVLGDFEAAESAIAADRVEPRGLLRLNVPLAFGTRQIAPLLARFAALYPGVSVELG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D AIR+ ++ SSL+ R+L M AAP YL+ P +L Sbjct: 128 LNDRLVDLIEEGWDLAIRI-GTLKDSSLVARRLAPCRMMICAAPSYLEAHGTPRRTADLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + W I L+ N+ +++ + G G+ P + Sbjct: 187 DHNCLGY---TLAAAGPSRWRMGGKTAIDVTVSGNLRANNGDALLAAALAGQGLIYQPTF 243 Query: 248 IVKDN---PNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFI 290 IV D LV + DV PS V+ Y + K++AF +++ Sbjct: 244 IVGDEVRAGRLVPLRLDV-PPSELLAVHAVYLPDRTPSAKVRAFIDYL 290 >gi|261251648|ref|ZP_05944222.1| transcriptional regulators LysR family [Vibrio orientalis CIP 102891] gi|260938521|gb|EEX94509.1| transcriptional regulators LysR family [Vibrio orientalis CIP 102891] Length = 318 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 101/183 (55%), Gaps = 1/183 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSFT AA + SS+S+QI LE+E+G++L R R +LT G + Sbjct: 5 NQLSLFIDVVQQGSFTKAAALHDMDNSSLSKQIKKLESELGVQLLNRSTRSFSLTPAGEE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + L Q +P G++RI +G+N L+ + +F+ YPD++I+ Sbjct: 65 ILEQAHSIVGTLNHVQSIADSYHAQPKGRIRITAPYHVGRNHLRPVITQFMATYPDVEIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD+K DI D+ D A RL + + SSLI +K+ I A+ +++ EP + +E Sbjct: 125 LLLDDKRSDIISDHFDVAFRLGR-LDDSSLIAKKIANIRPVLLASHSFIERYGEPKTPEE 183 Query: 186 LDK 188 L K Sbjct: 184 LAK 186 >gi|126734910|ref|ZP_01750656.1| transcriptional regulator, LysR family protein [Roseobacter sp. CCS2] gi|126715465|gb|EBA12330.1| transcriptional regulator, LysR family protein [Roseobacter sp. CCS2] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 8/284 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DW ++ F VA +GS + AA L SQ ++ RQI +E ++G +LF+R RG LT+ Sbjct: 7 SLDWSLVQAFLAVAETGSLSAAARNLGTSQPTLGRQIKAIEAQLGAELFHRRPRGFALTQ 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ L R + + + + G +RI ++ L + + L P Sbjct: 67 TGADLVRPAKTMRDAVRQIALTAAGQQARLEGTVRITASVATSAMHLPPIIAKIRKLEPQ 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I+L+ + ++ AD A+R+ +P Q LI + + I + +AA YL P Sbjct: 127 IAIELVPGDDTRNLLYREADIAVRMYRPTQ-LDLITQHIGEIPLGVFAARSYLAERGMPK 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 I +L H+ + + D +E F T VDR + R C +Y +++ G G Sbjct: 186 VIADLPNHDFVGY-DSNTAIIEGFAATGTKVDRDFFKTR--CDDNIAYWELVRA---GCG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 I I + +P + I V P+ ++ EA++ T +++ Sbjct: 240 IGFAQADIGRRDPQIAEIDLGVSMPTLPIWLTAHEAMRQTPRVR 283 >gi|121634228|ref|YP_974473.1| lysR family transcriptional regulator [Neisseria meningitidis FAM18] gi|254804320|ref|YP_003082541.1| putative LysR-family transcriptional regulator [Neisseria meningitidis alpha14] gi|304388393|ref|ZP_07370503.1| contact-regulated protein A [Neisseria meningitidis ATCC 13091] gi|120865934|emb|CAM09671.1| putative lysR-family transcriptional regulator [Neisseria meningitidis FAM18] gi|254667862|emb|CBA03919.1| putative LysR-family transcriptional regulator [Neisseria meningitidis alpha14] gi|254671007|emb|CBA07778.1| putative transcriptional regulator LYSR-type [Neisseria meningitidis alpha153] gi|254672415|emb|CBA05746.1| putative transcriptional regulator LYSR-type [Neisseria meningitidis alpha275] gi|304337625|gb|EFM03784.1| contact-regulated protein A [Neisseria meningitidis ATCC 13091] gi|308389955|gb|ADO32275.1| putative lysR-family transcriptional regulator [Neisseria meningitidis alpha710] gi|325131500|gb|EGC54207.1| putative lysR-family transcriptional regulator [Neisseria meningitidis M6190] gi|325137546|gb|EGC60128.1| putative lysR-family transcriptional regulator [Neisseria meningitidis ES14902] gi|325141609|gb|EGC64073.1| putative lysR-family transcriptional regulator [Neisseria meningitidis 961-5945] gi|325197644|gb|ADY93100.1| putative lysR-family transcriptional regulator [Neisseria meningitidis G2136] gi|325204813|gb|ADZ00267.1| putative lysR-family transcriptional regulator [Neisseria meningitidis M01-240355] Length = 299 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289 >gi|148258541|ref|YP_001243126.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410714|gb|ABQ39220.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 305 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 17/292 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DW L F +AR G+ + AA L + +++R+++ LE IKL R AR TLT Sbjct: 22 MQIDWTDLHHFVTLAREGTLSAAARALGVDHVTVARRVAALERTTKIKLVDRRARTYTLT 81 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L S + H + + S +G++ I+ L ++ L E +P Sbjct: 82 EDGRRLAAAASPMEHAAFAIERAVVASRPGLTGEVSISAPPTLANRIIAPRLVELRRQHP 141 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I I+LI + + ++ AD A+RL +P LI RK+ Y APHYLK Sbjct: 142 AIAIKLIGEKRIASLNRREADIALRLSRP-DEPGLIARKVGRFGFSLYGAPHYLK----- 195 Query: 181 LSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 E +H L I + D WL + I R LQ S G Sbjct: 196 ----ETPQHALGFIAY-DASMDSAPQQQWL----KAIAGRREIVLQTGDLESQAAAARAG 246 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA LP ++ ++P L+R E ++ L+++ ++A +F+ Sbjct: 247 LGIAALPHFVGDNDPGLIRYDERQGGVGRDIWLVVHRDLRHSPLIRAVMDFL 298 >gi|127511757|ref|YP_001092954.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126637052|gb|ABO22695.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 301 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 142/296 (47%), Gaps = 17/296 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAEQL LS+ +SR I +E +G++L +R R ++L+ QG + Sbjct: 7 IRSFVEVASCGSFTQAAEQLGLSRLQVSRHIQEVERWLGLRLLHRTTRSVSLSVQGEEAF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q Q + G +RIA+ I LGQ LL + +F +P++++QL Sbjct: 67 IYCQKILDEVAALQNRAQRHRQELVGSIRIASPIGLGQALLFDAVDDFTREHPEVKVQLQ 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ + + + D A+R ++P SLI R+L+ I A+P YL S+ ++ Sbjct: 127 LSDEMVQLVDERVDIALRYTQQP--DESLIARRLMHIDSVLCASPDYLAGHEPITSLDDI 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 HN + WL D E +IS LQ N +++ + G G+ LP Sbjct: 185 TAHNCLLHAS-------QTRWLFVKDNQNIEKKISGNLQANDMGVLIKAAMRGKGLIHLP 237 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + LV ++ + P T++ Y L + + R+FI A W+ Sbjct: 238 CDLANAHLASGELVELLPEYHLPGKTLWAVY---LSRSYQQHLIRHFIDFLAERWQ 290 >gi|330939108|gb|EGH42539.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 9/285 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S I + I LE +G++LF+R R + LT +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LE ++EL + P G+LRI ++ L L+ + +F+ YPDI++ + Sbjct: 69 CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ +++ + + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHAIPRHPGDLSQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + P +W + + + + + N+ ++ G GIA LPD++ Sbjct: 186 ACLLHK--FPSTGRFEHWPPGREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPDFM 243 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + N L+ +++D + T +P + + +L+ F +F+ Sbjct: 244 ISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288 >gi|167035415|ref|YP_001670646.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166861903|gb|ABZ00311.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 302 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 16/298 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V GS + AA+ L LS+ +SR ++ LE VG +L R R L+LT G + Sbjct: 5 NAMRVFVTVVDLGSQSAAADHLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTAAGQE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ Q +Q+ P G LRI+ + GQ L + ++ YP ++++ Sbjct: 65 TLPRCRQLLDLAGDLQAAVQQPEDAPKGALRISVSTSFGQAQLVDAVAAYVQRYPGVKVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + D AIR + +LI R+L AAP YL P ++E Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLSVCRSVVCAAPAYLHEHGTPQRVEE 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +HN +T FG + W + + P + N +++ + + G+GI Sbjct: 184 LSRHNCLTHAYFGHSL--------WHFEVAGQHVAVPVAGNISANEAMTLQKAALAGAGI 235 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 A+LP Y + L+R++ + + Y L++ +F+ L+ +D Sbjct: 236 AMLPTYQAAEALRRGELIRLLPEARPRELNLNAVYTSRKHMPATLRSMLDFLVLRFKD 293 >gi|254252337|ref|ZP_04945655.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124894946|gb|EAY68826.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 356 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 3/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 59 IELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 118 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E P+G LRI+ G + L F YPD++++ Sbjct: 119 EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVRVETH 178 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P SSL+ RKL + AAP YLK P ++ +L Sbjct: 179 LSNRNIDFAEEGFDLAIRGRAPAD-SSLVARKLEDAELVVVAAPGYLKRAGTPTAVGDLH 237 Query: 188 KHNLITFGDLIPKCMEDFNWL 208 H I F +P WL Sbjct: 238 AHECIQF--ELPSSGRPIPWL 256 >gi|153216986|ref|ZP_01950750.1| transcriptional regulator, LysR family [Vibrio cholerae 1587] gi|124113993|gb|EAY32813.1| transcriptional regulator, LysR family [Vibrio cholerae 1587] Length = 309 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ +F V GSFT AAE L +++S +S QI+ LE V ++L R R ++LT +G Sbjct: 17 ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLTTEG 76 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + + E + + + SG +RI TTID+G LL L EF YP + Sbjct: 77 DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 136 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LD+ D+ D IR+ + + SSSL+ R + + YA+ YL+N +I Sbjct: 137 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 195 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L++H+ + L +P V + S NS L +M G G+ Sbjct: 196 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 253 Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ P+ LVR+ D S T+ YP +++ F +++ Sbjct: 254 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 303 >gi|78067785|ref|YP_370554.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77968530|gb|ABB09910.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 320 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPATIAD 185 Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN + + ++ + D + V+ L VN + + G+GIA Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|307825003|ref|ZP_07655225.1| transcriptional regulator, LysR family [Methylobacter tundripaludum SV96] gi|307734050|gb|EFO04905.1| transcriptional regulator, LysR family [Methylobacter tundripaludum SV96] Length = 304 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF VA++GSF A L +S++ ++ I LE +G +LF R R L+LT+ G+ Sbjct: 7 MNVFVRVAKAGSFAGGARDLDISRAMATKHIMHLEGVLGTRLFNRTTRSLSLTDVGASYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++E + + +P G LRI+ +G + + EFL ++ D+ I++I Sbjct: 67 ERCQQVLLEVEEMEAAVTHLQTEPRGVLRISAPPVIGSTHIAHAVSEFLKIHSDLTIEMI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ + D AI L + +S+ RKL + + +P Y + P + ++L+ Sbjct: 127 IQSSPGDLIDEGIDVAIFL-GALDDTSMFARKLASSSLVVCGSPDYFEQYGIPETPEDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + P+ WL + +S +Q N I + G G+ +LP Sbjct: 186 NHSCLVNWAIAPRN----KWLFKGEAGYTGINVSGRMQANVADPIRIAAISGLGLVMLPT 241 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 YIV + L ++ED +P V+ YP + K+++F +F+ Sbjct: 242 YIVGRDIEKGRLKVVLEDYTSPPLDVHAVYPHRKYLSAKVRSFMDFL 288 >gi|262278580|ref|ZP_06056365.1| regulatory protein [Acinetobacter calcoaceticus RUH2202] gi|262258931|gb|EEY77664.1| regulatory protein [Acinetobacter calcoaceticus RUH2202] Length = 295 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 145/284 (51%), Gaps = 7/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +A +GS A L +S S++ + + LE ++G++LF+R+ R + LT +G Sbjct: 9 VFVKIAETGSIVAAGRSLGISASAVGKSLIRLEEKIGVRLFHRNTRSINLTAEGILFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL ++ P G+LR+ ++ L +L+ L +F+ YP+I++ L Sbjct: 69 SRRILAEIEAAEMELSQAIKSPQGRLRV--SLPLVSSLVLPILGDFMQEYPEIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R P S L KL T A+P YL P +L KH Sbjct: 127 DRLVDVIEEGFDAVVRTGIP-TDSRLKASKLGTFRQLLVASPAYLLQRGRPTVPADLLKH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + + +E + T + P + IS + N+ + + + + G GIA LPD+ + Sbjct: 186 SCLHYRFSHSGKLEKWPLKTTENEPELQLPISMI-CNNIETRVCFALKGRGIACLPDFSI 244 Query: 250 KD--NPN-LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 K+ N N LV+++ + + + +P + + K++AF NF+ Sbjct: 245 KELLNTNQLVQVLPEFVDRTGVFNILWPASKHPSPKVRAFVNFL 288 >gi|162448434|ref|YP_001610801.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159016|emb|CAN90321.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 322 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 5/289 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F +V GS T AA L ++ S+SR+I+ LE +G++L R R + TE G Sbjct: 18 LRAFCLVVDLGSITAAARTLGETKGSVSRRITRLEHALGVELLRRSPRLVQATEDGLAYR 77 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 LE + +Q++ +P G LR+ DLG ++L F +P+I ++L+ Sbjct: 78 MRVGRALELLEDANVAVQQARSRPRGHLRVTAPFDLGLSILAPLSAGFAERFPEISLELL 137 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +D D A+R + SSLI KL I + +AAP YL+ ++L+ Sbjct: 138 LTEALLDFDAHQVDVALRATSSLPDSSLIAHKLQHIEVGLFAAPSYLRKHGAVRRPEDLE 197 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H L+ + A R E R+ + + + + + + G GIAL+P Sbjct: 198 GHRLLLAQTARGHATIALSARARDGRDRAELRVRAAISASDFSFCREVALAGGGIALVPA 257 Query: 247 YIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 V+ D LV +++D I + ++Y +P K++AFR+++ Sbjct: 258 INVRGDLDAKRLVPVLKDYAIHGAASLYLVHPGTRFLPSKIRAFRDYLL 306 >gi|116694912|ref|YP_729123.1| transcriptional regulator [Ralstonia eutropha H16] gi|113529411|emb|CAJ95758.1| transcriptional regulator [Ralstonia eutropha H16] Length = 307 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 134/304 (44%), Gaps = 12/304 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++ F VA GS T AAEQL +S ++ +R ++ LE +G +L R R L LT+ G Sbjct: 4 WTQIEFFVQVAELGSLTKAAEQLGMSSAAATRCLNALEERLGARLVERTTRRLWLTDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + HR + + ++ + + E+++ P+G LR+ + L L F YP++ + Sbjct: 64 EYHRRCAAMLAEMAEAEAAINEATLNPTGVLRVTASASFAMIHLAPALPAFRACYPNLAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+I N+ D D AIR R+ S + RKL A+P YL P + Sbjct: 124 QIIAANRYPDFIEAGIDVAIRTREHEGDSGITVRKLAETRRVLAASPGYLAERGMPDAPD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H ++ + + F D P S L N I + G GI + Sbjct: 184 ALRQHQMLIYNLANDPYLLHFR---RGDETATVPVTSVLDSNEGQVIRAAALAGHGILVQ 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK------AR 295 P YI+ ++ LV ++ D P T+ Y +++ F +F+F + AR Sbjct: 241 PLYIIYEDIVAGRLVPVLPDWQLPKLTINVAYQCRRHQPARIRVFIDFLFERFERLGLAR 300 Query: 296 DWKF 299 W+ Sbjct: 301 KWEM 304 >gi|110681268|ref|YP_684275.1| LysR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109457384|gb|ABG33589.1| transcriptional regulator, LysR family, putative [Roseobacter denitrificans OCh 114] Length = 309 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE + ++LF R R LT TEQG Sbjct: 5 DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEDHLSVRLFQRTTRSLTPTEQGKA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E+ +E + ++ + + P G L IA + LG+ L+ + FL YP++ I+ Sbjct: 65 FYGGACEILSSVENAEAQVVDITENPKGALYIAAPLGLGRRLIAPQVPAFLAAYPEVSIR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A L +P S+ I RK+ + AAP Y+ P+S E Sbjct: 125 LRLTDRKVDLTTEGLDLAFFLGQPADSTLRI-RKIADVPRVLCAAPSYIAARGNPMSGDE 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 L D+H + P E F W + + R++ + + + + + G GI Sbjct: 184 LVADRHECLNL--RFPGATE-FQWRLRTAEGLKKFRVTGRYESDDGDVLTDWALAGHGIT 240 Query: 243 LLPDYIVKDNPNLVRIM 259 L P + + D+ R++ Sbjct: 241 LKPVFEISDHLKAGRLV 257 >gi|238025089|ref|YP_002909321.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237879754|gb|ACR32086.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 302 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 136/288 (47%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F +GSFT AA++L LS+ +SR+++ LE + ++L R+ R L +TE G Sbjct: 4 DDLRIFIATVEAGSFTGAADKLLLSKQFVSRRMAALEAALRVRLLNRNTRKLAVTESGQT 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + + + G L+I+ + G + L + EFL +P +++ Sbjct: 64 FYTHAQRILAEVAQAEEAMSARHTELHGSLKISAPMSFGISHLSPLIAEFLAAHPAVRLD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R+ + S+L+ R L T+ M A +P Y + EP + + Sbjct: 124 VELSDRRVDLIGEGFDLALRI-GALADSTLVARTLGTLRMIACCSPAYRRLHGEPATPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + +G + + D T D L N+ + + G GIALLP Sbjct: 183 LHGHACLLYG----QELRDGWEFDTADGRRAYDVQGPLLANNGDVVRDAAIAGLGIALLP 238 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +IV LV I+ +P + YP+ + + ++ F+ Sbjct: 239 QFIVGPALARGELVAILGAHASPPLRLSAVYPQHRQGSTAIRTLLAFL 286 >gi|229592568|ref|YP_002874687.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364434|emb|CAY52245.1| LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 13/263 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L++F V GS + AAEQ+ + S++SR +S LE ++ L R R + LT Sbjct: 1 MKARSDELQIFVSVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++E + L KP+G+LRI + + + + EF LYP Sbjct: 61 EEGKYFFEQAKVILVQMEALEERLSSRQKKPAGRLRINAAVPFMLHGIVPYIAEFRSLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I ++L D+ ID+ D AIR+ + S+L R L + +H A+P YLK P Sbjct: 121 EILLELNSDDLIIDLLEQSTDIAIRI-GALADSTLHARALGSTPLHILASPEYLKQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATV--DRPIGEPRISCLQVNSYLSIMQYCV 236 ++ EL H L+ F E N W L V DR + +PR++ +S ++ Q + Sbjct: 180 TTVAELAGHTLLGFTQ-----TETLNHWPLRHVEGDRWLIQPRVAA---SSGETVRQLAL 231 Query: 237 LGSGIALLPDYIVKDNPNLVRIM 259 G GI L +++ D+ + R++ Sbjct: 232 EGQGICCLSNFMTVDDIDAGRLV 254 >gi|329113272|ref|ZP_08242055.1| Putative HTH-type transcriptional regulator LtrA [Acetobacter pomorum DM001] gi|326697413|gb|EGE49071.1| Putative HTH-type transcriptional regulator LtrA [Acetobacter pomorum DM001] Length = 324 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 8/266 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSF+ + + +SQ +ISR I+ LE G LF R R LT+TE G L Sbjct: 27 LHSFVRVAATGSFSAVSRETGVSQPTISRHIALLEAHYGTTLFARTTRSLTMTEDGRSLL 86 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV LET + L SG +R+ T G L + + E L +PD+ I+++ Sbjct: 87 PHAYEVLEILETAETVLGRRRASVSGLVRLGVTTAFGLCLTR-RIGELLERHPDLAIEVV 145 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ + D A+R+ I SLI RKL + AAP L C P+ ++L Sbjct: 146 MRDAFGDLVEEGLDLAVRV-GDIAEGSLIARKLGVVRKWLVAAPSCLARCGTPMHPRDLP 204 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 ++ + + + D+N+ + + P + + NS +++ G GI LLP++ Sbjct: 205 EYPGVVYNYGSSRL--DWNFERDGEESVIAPS-AVFRANSSEAVLYAVESGLGIGLLPEF 261 Query: 248 IVKD---NPNLVRIMEDVITPSFTVY 270 V++ + L R+ D PS Y Sbjct: 262 QVREAVADGRLTRLFADWNIPSLPFY 287 >gi|293609442|ref|ZP_06691744.1| regulatory protein [Acinetobacter sp. SH024] gi|292827894|gb|EFF86257.1| regulatory protein [Acinetobacter sp. SH024] Length = 300 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 4/197 (2%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L VF +VA S + AA L + S ISR I+ LE ++GI+ F R R L Sbjct: 1 MSRQFDHLADIEVFLIVAEKLSISAAAIYLATTPSVISRTITRLEKKLGIQFFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++++ G L L++FLL Sbjct: 61 SLTEAGQLYYEKMQHAFQLIDHAERAIQGKQLQISGKIKLSVPTTYGHYRLPELLQKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + SS+LI R L + A+P YLK Sbjct: 121 QYPDIQIEVSISNRNVDLIAEGFDLAIR-QGQLPSSTLIARPLELAPLQLVASPEYLKRM 179 Query: 178 REPLSIQELDKHNLITF 194 P ++++L+ H I F Sbjct: 180 GVPQTLEDLNHHQCIAF 196 >gi|316935119|ref|YP_004110101.1| LysR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602833|gb|ADU45368.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris DX-1] Length = 305 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 10/298 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA F AA +L +S S+++R ++ LE +G +L R R + LT+ G++ Sbjct: 5 DTMSAFVAVAELQGFAPAARKLGMSPSAVTRLVAALEQRLGTRLLQRTTRSVALTDTGAR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + LE V PSG+L ++ + G+ + L ++L YP + + Sbjct: 65 YLERVRRILADLEEADASAAAERVTPSGRLVVSAPVGFGRRYVAPLLSDYLRRYPQVTGE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + I++ D DCA+R+ + SSL+ R+L + A+P YL P + E Sbjct: 125 LRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPDYLAARGVPATPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + H+++ FG + +W VD R + P + L N + G G+A + Sbjct: 184 IAAHDVVHFG----QTGAPVDWRFVVDGRDVRVPCVPRLVSNVADVAILDAERGGGLARV 239 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 Y D R ++ D P + YP A + K++AF + A DW+F Sbjct: 240 LAYQAADAIAAGRLQIVLADYEVPPLPIAMVYPTARLLSAKVRAFIDLAVETA-DWQF 296 >gi|237808396|ref|YP_002892836.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237500657|gb|ACQ93250.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 300 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 137/289 (47%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F GSF+ AA+ L +S + + + LE +G++L R R LTE G+ + Sbjct: 7 MTMFVKAVELGSFSAAADALQMSPQLVGKNVRMLEQHLGVRLLNRTTRSQHLTEIGATFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E + ++ + P GKLRI ++ G + L + E++ LYP++ ++L Sbjct: 67 ERARNILAEMEIAEGLAAQTRIVPKGKLRINASVTFGVHALTPKIAEYMQLYPEVSVELC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ ID+ + D R+ + + S LI R+L + A+P Y++ L+ +L Sbjct: 127 LSNRYIDLIDEGFDAIFRIGE-LSDSGLIARQLRPYRLILCASPRYMETHEPLLTPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 +H + F + T D P G + L +S +I+ + G+GI L Sbjct: 186 RHECLGFSH------TELRTTWTFDGPDGHKTVQVKGRLMSDSGEAIVCAGLCGAGIMLQ 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V + LV I+ + P+ ++ + + T KL++F +FI Sbjct: 240 PSELVTPYLQSGQLVEILPEYKAPTRPMHLVHTPDRRMTPKLRSFVDFI 288 >gi|83646889|ref|YP_435324.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83634932|gb|ABC30899.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 300 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 23/303 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V ++ SF+ A + SS++RQI LE E+G +L +R R + LTE G Sbjct: 7 LRFFEHVGKAASFSDTARHFDIPVSSVTRQIQALEEELGARLLHRTTRVVKLTEIGEIYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + S++ L+ + +PSG LRI+ + G++ + L EF LYP+I I + Sbjct: 67 QHCSQILRSLDNADELIVNYRSRPSGVLRISCSSSYGESRILPILSEFEALYPEIIIDID 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +K +DI D D A+R + I ++ + + + A+ YL+ PL I++L Sbjct: 127 LTDKVVDIMRDSVDIAVRAGQ-IPDERVVAKHIDDNNFSLAASDAYLQRYGTPLRIEDLS 185 Query: 188 KHNLITF--GDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I F D + + N W RP L +S + Q+ G G+A+ Sbjct: 186 EHRAIFFRTSDQVLHWQANINGRWRQVDIRP-------ALITSSPRLLRQWAGEGKGLAM 238 Query: 244 LPDYIVKDN--PNLVRIMEDVITPSFT-------VYFCYPEALKNTGKLKAFRNFIFLK- 293 +P+++ + N P RI+E + P + +Y Y K+KA +F+ + Sbjct: 239 MPNWVWRSNSLPAGFRILE-LDYPLYVSRATQLGIYLLYQRPKYAVPKVKAAVDFLVSRL 297 Query: 294 ARD 296 ARD Sbjct: 298 ARD 300 >gi|33598291|ref|NP_885934.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33566849|emb|CAE39064.1| LysR-family transcriptional regulator [Bordetella parapertussis] Length = 307 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 142/301 (47%), Gaps = 18/301 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ A+ L + +S +SR+IS LE +G++L R R L LT G Sbjct: 3 DLNDLYYFAQVVEQGGFSAASRVLDIPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+ + +++ +P+G + ++ + + Q +L L EFL +P + Sbjct: 63 ERYLHYCQEMTASARAAEDAMRQLQSEPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL++ N+ +D+ + D A+R+R + + + L+ + L A+P YL+ P + Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 QEL H ++F D + W T R GE +Q N ++ + Q V G Sbjct: 183 PQELASHRTLSFND----PQNEVRWPLTNQR--GESVDVAVQPVLASNDFIVLTQAAVRG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294 GIALLP + LVR++ D +P V+ YP G + A R F+ FL Sbjct: 237 RGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYP---SRRGMMPAVRAFLDFLAK 293 Query: 295 R 295 R Sbjct: 294 R 294 >gi|330818511|ref|YP_004362216.1| LysR family regulatory protein [Burkholderia gladioli BSR3] gi|327370904|gb|AEA62260.1| LysR family regulatory protein [Burkholderia gladioli BSR3] Length = 318 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 148/293 (50%), Gaps = 20/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE +G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQTLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +S+ P G+LR+ + G + + ++ Y D+ +++ Sbjct: 66 YERLVQALTELDEAGQAVGAASIVPQGRLRVTSLSAFGLRHVMNAVTDYAARYADVTVEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL+ P ++ + Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPFGLKSSSLVARQIATAHILLVASPAYLEEHGTPATLAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL-GSGI 241 L++HN + D +++D + R++ L VN +L ++ VL GSGI Sbjct: 186 LEQHNYLR---------RDAGS-SSIDAQAFDSRVTLSGNLIVN-HLEALRVAVLSGSGI 234 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 A+L +V D+ LV ++ DV+ P +Y Y + K+++F +F+ Sbjct: 235 AMLGTEVVGDDIEAGRLVPLLLDVMPPRELPIYAVYASRRHVSAKVRSFVDFL 287 >gi|238023516|ref|YP_002907748.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237878181|gb|ACR30513.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 303 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 151/313 (48%), Gaps = 43/313 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VV R SF+ AAE+L +S + +S++++ LE ++G +L +R R + +T+ G + Sbjct: 8 DDLRVFSVVVRLTSFSAAAERLGVSPAYVSKRVALLEAQLGARLLHRSTRRVAVTDSGER 67 Query: 66 L----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 + ++ +V H +E ++ + P G LRI+++ G+++L L +F Y Sbjct: 68 VVAWAEKILDDVDHLVE----DVSTTRTVPRGTLRISSSFGFGRHVLAPALLDFNARYAQ 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L L ++ +D++ + D +R+ I + LI R+L H A+P YL P Sbjct: 124 IDVRLDLFDRLVDVAGEGFDLDVRIGDEI-AEHLIARRLAANHRVLCASPDYLAAHGTPR 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI---- 231 I +L H +C+ + D P G R+ + ++V LS Sbjct: 183 QIADLAAH----------QCLA----IKERDHPFGVWRLTQRGETTSVKVGGALSTNHGE 228 Query: 232 --MQYCVLGSGIALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLK 284 +Q+ + G GI L I + P L R++ DV+ P+ V+ YP L + K++ Sbjct: 229 VAVQWALAGRGIVL--RSIWEAGPLLASGALKRVLPDVMQPA-NVWAVYPARLAASAKVR 285 Query: 285 AFRNFIFLKARDW 297 +F+ W Sbjct: 286 VCVDFLAQAFAQW 298 >gi|91778871|ref|YP_554079.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691531|gb|ABE34729.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 312 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF +A + SF AA L +S + +R + LE + +L R+ R L+LTE+G Sbjct: 7 MRVFINIADTMSFGQAAANLGISNAMATRYLEQLEAHLNTRLVNRNTRSLSLTEEGEIYS 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V ++E + + +PSG LRIA + L L+E+L YP++++ + Sbjct: 67 KGCRNVLDEIEEIETIAIRGTTEPSGTLRIAAGASFSLSSLTPLLQEYLRQYPNVRLSVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + D I L K I ++LI+R L+++ A A+P YL P +L Sbjct: 127 LLHQHVDFVKEGFDVGIVLPKQISGTTLIKRSLLSVRPIAVASPSYLAIKGVPSRPADLT 186 Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIAL 243 H + + D +W+ A DR E R++ L VN+ L + Q + G GIA+ Sbjct: 187 SHTFLA----LTAASHDGDWIFAAPDRR--EKRVTLDAALMVNNALMLRQAALAGMGIAV 240 Query: 244 LPD-YIVKD--NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNF 289 LP+ +++ D L++++ D + + Y + + K ++F +F Sbjct: 241 LPENHVLTDLRGGTLMQVLTDFRITNADKELTLVYADRRHISAKTRSFVDF 291 >gi|153826387|ref|ZP_01979054.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] gi|149739865|gb|EDM54056.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] Length = 309 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ +F V GSFT AAE L +++S +S QI+ LE V ++L R R ++LT +G Sbjct: 17 ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLTTEG 76 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + + E + + + SG +RI TTID+G LL L EF YP + Sbjct: 77 DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 136 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LD+ D+ D IR+ + + SSSL+ R + + YA+ YL+N +I Sbjct: 137 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENSPPIHTI 195 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L++H+ + L +P V + S NS L +M G G+ Sbjct: 196 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 253 Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ P+ LVR+ D S T+ YP +++ F +++ Sbjct: 254 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 303 >gi|198244448|ref|YP_002216879.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938964|gb|ACH76297.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624642|gb|EGE30987.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 303 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 147/297 (49%), Gaps = 25/297 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182 + + D+ + D AIRL S ++LI R + AAP +L R P+ S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236 ++ L + I L P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHKRL-PTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFAL 233 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V + L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 234 AGSGVALLPQWLVNTALEEGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|330877683|gb|EGH11832.1| LysR protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 305 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 17/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V +GSFT AA +H+S++S+++ + LE + ++L R R + +T G+ + Sbjct: 1 MQAFARVVETGSFTKAAGTMHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAVYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + L ++ P G+LR+ L LL + F YPDIQI + Sbjct: 61 ERVVRLLADMDDAETSLSSAASLPRGRLRVDVPSPLASMLLMPAMPAFHARYPDIQIDMG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC +R + I SL+ R + + + YAAP YL+ P +L+ Sbjct: 121 VSDRIVDLIGENVDCVVRGGE-ITDQSLMARHVGDLQLGVYAAPGYLQRMGTPAHPLDLE 179 Query: 188 K--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 H ++ + G +P M V G ++ N+Y++ + G G Sbjct: 180 NSSHRIVGYLWARTGKALPYAMHRDGEQVRVQ---GRYTLTVDDGNAYIAA---GLAGMG 233 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I LPDY+ + +LV + +D S +Y +P + K++ F +++ Sbjct: 234 ILWLPDYMARPYLARGDLVPLFQDWQLDSMPMYVAFPPNRHVSIKVRVFIDWVI 287 >gi|327395663|dbj|BAK13085.1| HTH-type transcriptional regulator PtxR [Pantoea ananatis AJ13355] Length = 310 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 20/296 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F + SGS + AA QL ++Q +ISR++ LE +G+KL R L LT+ G + + Sbjct: 13 MHTFIRIVESGSLSAAALQLGITQPTISRRLQSLEQGLGLKLILRTTHALKLTDDGERCY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + EL + P G LR+ GQ+ L L F+ YP ++I+ + Sbjct: 73 AQARQLLATWHALEDELTGAGSDPVGILRVRAPHAFGQDQLVTPLVNFMRRYPRLRIEWM 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ D + DCAI++ + S++ L + AAP L+ Q Sbjct: 133 LNDRTPDFVAENVDCAIQVGA-LTDPSVVAVLLAEVPRIVVAAPALLQ--------QYPP 183 Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGI 241 + + GDL + F N +A + GEP + L +S ++ + + G G Sbjct: 184 INQVAQLGDLPWLALTSFYRNEIALQHKDKGEPMNLPIVPLLSSDSLFAVRKAALAGLGT 243 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 A+L ++++++ NL+++M + P V+ YP A +L AF F +KA Sbjct: 244 AILSTWVIQEDLAQGNLIQLMPEWQAPPLPVWLTYPWASYYPARLTAF--FAMIKA 297 >gi|115358090|ref|YP_775228.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115283378|gb|ABI88894.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 302 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 135/273 (49%), Gaps = 14/273 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F A+S SFT AAEQL L++S++ + I+ LE +G +LF+R R ++LT G Sbjct: 12 IFVTAAKSRSFTDAAEQLGLTKSAVGKAIAKLEDRLGAQLFHRTTRSISLTADGEAYFAA 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ T + + + +P G+LRI G+ +L L + +PD+Q + Sbjct: 72 CTSALDEIATAETAIGPGNQRPVGRLRIDMPAAFGRRILVPILLDIGRKHPDLQFTMTFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID + D IR + S+ LI R+L M A+P YL P +++ L+ H Sbjct: 132 DHLIDPIEEGVDLVIRFGELQSSAGLIARRLTRQRMLIAASPDYLSRRGTPGNLEALEHH 191 Query: 190 N-LITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + ++ + +P +W ++ + I P Q++ SI+Q + G G+ +P Sbjct: 192 SCVVGYRRGLP-----LSWRVKINGQAQRISPP--GTHQISDGDSIVQAALAGMGLCQMP 244 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 +++ D+ L+ ++EDV + V+ +P+ Sbjct: 245 MSLLRPYLDSGALLPVLEDVSSELIDVHAVWPK 277 >gi|332850266|ref|ZP_08432614.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332871233|ref|ZP_08439802.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|332730841|gb|EGJ62150.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332731642|gb|EGJ62926.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 300 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QN L L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I +QLI+ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL Sbjct: 121 EILLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237 S EL H +++ + + ++ L D + + ++S + N Y+ + Q Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD +D + LV+I+ D + YP G L A R FI Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|261393197|emb|CAX50816.1| HTH-type transcriptional regulator CrgA [Neisseria meningitidis 8013] Length = 299 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSAEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289 >gi|260914028|ref|ZP_05920501.1| LysR family transcriptional regulator [Pasteurella dagmatis ATCC 43325] gi|260631661|gb|EEX49839.1| LysR family transcriptional regulator [Pasteurella dagmatis ATCC 43325] Length = 296 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V + SFT AA Q ++S + S+ ++ LE ++ +L R R ++ TE G Sbjct: 5 NAISVFCKVIETQSFTQAAAQQNISVAMASKLVAQLEEQLKTRLLQRTTRKISPTEAGLV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +LE + + + G L I+ D G + NL F+ +P++ I Sbjct: 65 YYQRCLPILVELEEAESSISSLATALQGNLTISVPRDFGLLFITPNLASFIKAHPNLHID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ +D+ + D A+R+ +Q SSL+ +K+ T MH A+P YL+ P + +E Sbjct: 125 ISFNDRMMDLISEGYDLALRIGH-LQDSSLVAKKIATASMHVVASPEYLEKNGTPQTPEE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L KH+ + + + +F + R + R+ C N+ +++M+ G GI P Sbjct: 184 LHKHHCLLYKARGNQIYWEFQQKKQLCRVKMQSRMVC---NNGMTLMEIAKTGLGIINTP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ N LV I+ D + YP K KAF F+ Sbjct: 241 SFFIQEALKNGELVEILADYEQQPLDINVVYPHRRHLPAKTKAFIEFL 288 >gi|206580000|ref|YP_002240989.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206569058|gb|ACI10834.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 315 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 10/299 (3%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 FD+ + VF VA GSFT A L + S +SR ++ LET +G +L R R ++LTE Sbjct: 5 FDYLADVEVFLAVAERGSFTAGAVALSSTPSVLSRAVTRLETRLGCQLLRRSTRRISLTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 GS + + L+ + E Q SG+++++ G L L + L+PD Sbjct: 65 AGSAYLSQVRQAFEVLDNAERETQGQKGALSGRVKLSAPTTWGHYRLPARLALYRQLHPD 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QI+L + N+++DI + D +R + + S L+ +KL + A+P YL++ PL Sbjct: 125 VQIELNITNRNVDIIAEGFDLVVR-QGHLPDSGLVAKKLEDAALCLVASPAYLRSTARPL 183 Query: 182 S-IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQV-NSYLSIMQYCVLG 238 S I +L H+ +TF ++P + W+ D R I S L V + L ++ + G Sbjct: 184 SKIADLRHHSCLTF--IMPATGKVAEWVFREDGRDISWLPTSSLHVSDDVLGVVSLALQG 241 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 +GI +IV++ LV ++ S YP + +A + + A Sbjct: 242 AGICQSYAFIVQEAIARGELVPVLPAFAGRSRPFSVLYPPHRSQSAAARALITLLTMPA 300 >gi|167644617|ref|YP_001682280.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167347047|gb|ABZ69782.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 301 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 126/283 (44%), Gaps = 7/283 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW R F V GS + AA L L+Q ++ RQ++ LE +G+ LF R +GL T+ Sbjct: 9 DWSLYRAFLAVLTEGSLSAAARTLGLTQPTLGRQVAELERALGVALFTRSPQGLKPTDAA 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + G +RI + +G +L L +F L+P + Sbjct: 69 LDLAPHAKAMAGAASAMARAASGAGNTARGVVRITASEIIGAEVLPQILADFRPLHPGVV 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L LDN+ D+ AD A+R+ +P Q +L+ R+L H+ YA Y++ P ++ Sbjct: 129 VELSLDNQQQDLLRGAADIAVRMVRPTQ-DALVARRLADTHLGLYAHRRYVEANGAPATL 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H ++ F P V R P+ + +S L+ + G GI Sbjct: 188 DDLRDHAIVGFDRGTPFLR------GLVQRVPLPPQGFAFRADSDLAQLAAVRAGFGIGF 241 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + I + +P+L+ + I V+ E L+ T +++A Sbjct: 242 IQHGIARRDPDLIPLCPGQIGFDLPVWLVMHEDLRATPRMRAM 284 >gi|317403802|gb|EFV84281.1| LysR family regulatory protein [Achromobacter xylosoxidans C54] Length = 302 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 13/290 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++ RVF VA GSF AA L L ++S+S + LE ++G +L +R R + LT G+ Sbjct: 4 FEQYRVFAQVAEMGSFIKAANALELPRASVSAAVQQLEAQLGARLLHRTTRQVRLTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++E Q+S + SG+L + + + L+ L L +P +Q+ Sbjct: 64 QLLERLRPLLSEVEDIDHLFQQSQRQVSGRLNVDVPSRIARRLVAPALPGLLRRHPRLQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ + DCA+R+ + SSL+ R L I + A+P YL++ P + Sbjct: 124 ALGSSDRAIDLIQEGVDCAVRV-GALHDSSLVSRPLGNIGLVNCASPAYLRDQGVPHAPD 182 Query: 185 ELDK-HNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGS 239 EL H ++ + P + W D R I P S + VN+ S + C+ G Sbjct: 183 ELPAGHWMVGYAS--PTTGRELPWEVVADDGGRRLIAVP--SRVVVNNAESYIACCLAGL 238 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ +P + V+D LV +M V YP + + +L F Sbjct: 239 GLIQIPRFDVQDLLEAGELVEVMPAHRAAPMPVALLYPHRRQRSRRLAVF 288 >gi|222109112|ref|YP_002551378.1| LysR family transcriptional regulator [Agrobacterium radiobacter K84] gi|221728034|gb|ACM31084.1| LysR family transcriptional regulator [Agrobacterium radiobacter K84] Length = 341 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 6/296 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ LR F ++ SGSF AA L ++ S++S I LE +G KL R R + LTE G Sbjct: 26 DFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAG 85 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S+L R + + +T +L E KPSG L++ + ++ L F Y DI Sbjct: 86 SRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDIT 145 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + + +DI++ D A+ + IQ + R + YA+P YL P Sbjct: 146 IDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLISIRLGPELKRIVYASPRYLARFGAPSEP 205 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 +L HN I F P + W + E +S L V+ + + G GI Sbjct: 206 GDLVHHNCINFRG--PHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKGIG 263 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + I K D+ +L+ ++E + P CYP+ + LKA +++ ++R Sbjct: 264 YGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSR 319 >gi|168820388|ref|ZP_02832388.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342924|gb|EDZ29688.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087315|emb|CBY97080.1| probable RuBisCO transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 303 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +P+++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPNLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|163850194|ref|YP_001638237.1| LysR substrate-binding [Methylobacterium extorquens PA1] gi|163661799|gb|ABY29166.1| LysR substrate-binding [Methylobacterium extorquens PA1] Length = 307 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 8/261 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V SG F AAE+L L + ++++ + LE E+G++L +R R L++T +G+ H Sbjct: 7 MEVFVEVVESGGFARAAERLRLHRPAVTKAVQHLEAELGVQLLHRTTRKLSVTAEGAIFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + T + P G +R+ I L + ++ L F YP++++ L Sbjct: 67 ERCRNVLADVADTLATFSPTR-PPKGPVRVDVPISLAKAVIIPALPGFCERYPEVELTLR 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ + DCA+R+ ++ S L R++ T+ M AAP YL +P ++ LD Sbjct: 126 SSDHQVDLVGEGVDCAVRIGT-LEDSGLSVRRIGTVPMLTCAAPAYLARHGKPTGLENLD 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + F LI +W +D R + S + V+ +++ + G G+ P Sbjct: 185 GHLAVNF--LIRHTRRTMDWNFLIDGRTVARSLRSGIVVDDTEAMVTGAIAGLGLIQAPR 242 Query: 247 YIVKDNPN---LVRIMEDVIT 264 ++ + N LV I+ D+ T Sbjct: 243 PSLQPHVNAGTLVEILPDLAT 263 >gi|16263265|ref|NP_436058.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021] gi|307318123|ref|ZP_07597559.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|14523940|gb|AAK65470.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] gi|306896164|gb|EFN26914.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 307 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 10/287 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L F VA SFT AA +L ++QS++S I LET +G++L R R + +TE G Sbjct: 5 DFNDLLWFLAVAEERSFTRAAAKLGITQSTLSHTIKRLETRMGLRLLTRTTRSVAVTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R + + L KPSG ++I + ++L+ L+ LL YPDI+ Sbjct: 65 ERLLRSLAPRISAIRDEIAALMAFRDKPSGTVKITLSDHALESLVWPKLQPVLLEYPDIR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L DN +I D D IRL + ++ + R + A A+P YL + P Sbjct: 125 LELSRDNGFRNIVEDGFDAGIRLGESVEKDMIAVRIGPDWRLLAVASPDYLADRPLPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 QEL +HN I + +++ ++ E R+ L NS ++ + G G Sbjct: 185 QELIQHNCINSR----QATGGGHYVWEFEKNGQELRVRVDGQLTFNSSYPMVDAALKGHG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 IA LP+ +V + LV ++E P Y YP N+ K Sbjct: 241 IAYLPEDLVAGHIAAGRLVALLEPWSPPFAGYYIYYPSRHHNSPAFK 287 >gi|127514335|ref|YP_001095532.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126639630|gb|ABO25273.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 311 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/303 (25%), Positives = 140/303 (46%), Gaps = 15/303 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ + L+++++SR+I+ LET+ G++L YR R L LTE Sbjct: 1 MDLNRIQMFAQVVDKGSFTSAAKAMGLTKATVSRKIAELETDTGVQLLYRTTRALKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + L++ + +L S G L+I I+LGQ FL +P++ Sbjct: 61 GSIYYNKIQRILMDLQSAEDQLSASQETIKGNLKIVCPIELGQLFFGRIFARFLEAHPEM 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L N+ +D+ + D ++ ++ S L +++ A+P YL P + Sbjct: 121 TLDAELTNRKVDMIEEGIDILFQVSD-VRDSRLQSYRVLNTDKSLVASPDYLARHGTPAT 179 Query: 183 IQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L H I T D + + W+ EP + L VN+ + + G Sbjct: 180 PQDLIDHKAIRLKSTHIDGGWRLFDGQQWITI------EPE-AQLTVNNVTLAREAAIEG 232 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIA P + + D +L+ ++ D + +P K +AF +I+L Sbjct: 233 LGIATAPTLVAQAAIDEGHLIPLLTDFPMAQTAITLSFPRRAYLPRKYRAFIEYIYLSLF 292 Query: 296 DWK 298 D + Sbjct: 293 DRR 295 >gi|217422905|ref|ZP_03454407.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|217393813|gb|EEC33833.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 305 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VV R SF+ AAEQL +S + +S++++ LE ++G +L +R R + +TE G + Sbjct: 8 DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ T ++ ++ ++ + P G LRI+++ G+++L L F YP + ++ Sbjct: 68 VYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I LI ++L T + A+P YL P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-PDHLIAKRLATNYRVLCASPGYLARYGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + I + F W TV ++ L N +Q+ + G GI L Sbjct: 187 LGAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242 Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P L R++ + P+ V+ YP L + K++ +F+ Sbjct: 243 --RSIWEAGPLLASGELRRVLPEASQPA-NVWAVYPARLAASAKVRVCVDFL 291 >gi|209518408|ref|ZP_03267231.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501129|gb|EEA01162.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 301 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 111/203 (54%), Gaps = 8/203 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V SG+FT AA+ +++ +SS++R I LE E+G++L +R +R LTLT++G + Sbjct: 7 MQTFVRVVDSGTFTRAADLMNVPKSSVTRLIQELEKELGVRLLHRTSRQLTLTQEGQIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V ++ + + ++ P GK+R+ L L+ + +F YPD+Q++L Sbjct: 67 EGSIRVLDEVGSLDGSVLSATRSPKGKIRVELPGSLAYQLVLPAMPDFFARYPDVQVELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184 + N+ +D+ + DC +RL P+ S SLI R T+ + A+P Y++ REP + Sbjct: 127 VGNRSVDLIAENLDCVLRL-GPLLSDSLIARSAGTLPLVTCASPAYIERHGLPREPADL- 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNW 207 + H ++ P+ DF + Sbjct: 185 -MQGHTIVRMNS--PRSGRDFAF 204 >gi|184158676|ref|YP_001847015.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332874371|ref|ZP_08442282.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|183210270|gb|ACC57668.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|322507513|gb|ADX02967.1| Regulatory protein LysR:LysR, substrate-binding protein [Acinetobacter baumannii 1656-2] gi|323518591|gb|ADX92972.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332737450|gb|EGJ68366.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 300 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 13/222 (5%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L VF +VA S + AA L + S ISR I+ LE ++GI+ F R R L Sbjct: 1 MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++++ G L L++FLL Sbjct: 61 SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + +S+LI R L + A+P YLK Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLAT 210 P +++EL H I F G + P + E+ W+ T Sbjct: 180 GIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPT 221 >gi|311103662|ref|YP_003976515.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758351|gb|ADP13800.1| bacterial regulatory helix-turn-helix protein, LysR family protein 13 [Achromobacter xylosoxidans A8] Length = 334 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 19/296 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66 F VA G+F A ++L + +S++SR + LE ++G +LF R R +LT +G + Sbjct: 33 AFMAVAVEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRSTSLTPEGQRFYEQ 92 Query: 67 -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + L+ + EL+E PSG +R+ +T+ G+ ++ L +F P+I ++ Sbjct: 93 CHPGVERIIQALDDMR-ELREG--PPSGLVRVCSTVGFGRKVVAPLLNDFRKANPNISVE 149 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD+ D + D D + R + ++ S +I +K++ + M A+P Y PLS+ E Sbjct: 150 LLLDDGPTDFTTDRVDVSFRNGR-MEDSQVIAKKVIPMQMMLCASPDYAARHGLPLSVDE 208 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H + F + + W V R P + L N ++Q + G GIA Sbjct: 209 LSRHGCVNF---LLASGRVYEWEFKVGGHLRKFAPPAM--LTFNDADLVLQAVLDGHGIA 263 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + Y V ++ LV + Y C+ +++ F +F+ + R Sbjct: 264 QMAGYQVCEHLRAGTLVACLPQYAPDDRGHYLCFLSRQHLPARMRVFIDFMTERIR 319 >gi|172063492|ref|YP_001811143.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996009|gb|ACB66927.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 300 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 134/302 (44%), Gaps = 11/302 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+D +R+F V GSFT A+ QL + S +SR++ LE ++G++L YR R +++TE Sbjct: 1 MDFDSIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + L + + P G LR+ +G L+ L EF YP + Sbjct: 61 GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI DN +D+ D A+R + S + R L H A+P YL+ P + Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRA-GMLTDSGYVARSLGWSHAKLAASPAYLERAGRPQT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL +H+++ G P A D PI IS N +++++ G G Sbjct: 180 PHELAQHDILYVGRDAPGLTLRLTNAAGDVADVPIRPVLIS----NESITVLRQAASGGG 235 Query: 241 IALLPD-YIVK--DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IAL+ YI + + L ++ D T ++ YP K++ F F+ Sbjct: 236 IALISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTG 295 Query: 297 WK 298 W+ Sbjct: 296 WR 297 >gi|83944023|ref|ZP_00956480.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. EE-36] gi|83845270|gb|EAP83150.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. EE-36] Length = 300 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 141/291 (48%), Gaps = 10/291 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L +F AR G+ A + LS +S +++I LE+EVG +L +R R +++T +G Sbjct: 4 DLKLLELFVRAARLGAIGKAGAEFGLSPTSATQRIQALESEVGAQLLHRTTRSVSVTLEG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++ ++ +++ + G LR+A G+ + + EFL ++P + Sbjct: 64 ERLLKHAERIFETVQDAMLDVSGENQVLRGTLRLAGPASFGRKYIAPFVTEFLSMHPGLT 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL L + DI + DCAIRL ++SSSL +KL + AAP YLK P + Sbjct: 124 VQLHLSDTVFDIVDNGFDCAIRL-GALESSSLKAQKLSSCPRILVAAPDYLKAMGTPQTP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 Q +L+ F +I ++++ + + N + + + G GIA Sbjct: 183 Q-----DLVHFDCVIRDALQNWKFKGPHGKEAAVKVAGRFVTNLAEGVTEAAISGFGIAR 237 Query: 244 LPDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV +++ ++ P + ++F +P +++ FR+FI Sbjct: 238 KCTWEVAEHLESGELVTVLDRYIVAPEWNIHFMHPPGGIEPLRVRQFRSFI 288 >gi|170701479|ref|ZP_02892433.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133603|gb|EDT01977.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 299 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR +F AA++L ++Q ++++Q+ LE V ++LF R RGL LT +G + Sbjct: 14 NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVEVQLFRRLPRGLALTREGLE 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S V L+ +P+ L ++TT L L +F L+PDI+++ Sbjct: 74 YF---SSVQRALQIISDATDALGQRPT-VLAVSTTPSFASKWLIPRLADFGRLHPDIEVR 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIRL KP + L L + + A A+P L + + Sbjct: 130 VIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDGGPPIRTPAD 189 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P+ +E D P PR S S L+I V G GIAL Sbjct: 190 LSMHALLHDAHDLWPEFIEKLGGKGQAD-PTKGPRFS----QSLLAI-DAAVAGQGIALT 243 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + +V+ + L R+ + S Y +P+A ++ L+A R ++F + Sbjct: 244 SEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQAHAHSEALQAMRRWLFAQ 295 >gi|104781076|ref|YP_607574.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110063|emb|CAK14768.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 306 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 14/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F + A +GSFT AA Q ++ +++SR ++ LE +G++LF R R + L+E G + Sbjct: 13 LELFCLAADAGSFTEAATQAGVTPAAVSRSVARLEERLGVRLFVRTTRQMRLSEAGQAYY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L + ++ ++PSG+LRI+ + L L F Y +Q+ + Sbjct: 73 QQCRQALGQLVEAERQVAGGQLEPSGRLRISAPTPYAHHRLLPLLPRFRERYTQVQVDVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D + + D AIR R P S L+ R+L + P YL P + +L Sbjct: 133 VSNRNVDFAEEPFDLAIRGRAPA-DSRLVARRLEDAELVIVGTPGYLARKGVPRTPADLA 191 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H+ I F G P + +D G ++CL +L+ G G+ Sbjct: 192 EHDCIQFEMPSSGRRPPWSFRQDGQVVEIDTQGG---LTCL--GDFLATSTLARHGGGLM 246 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+D + LV ++ D S YP+A K++ F +F+ Sbjct: 247 QAYRFTVQDALASGELVEVLGDYGGTSRPFMLVYPQARHMPLKVRVFIDFL 297 >gi|317054158|ref|YP_004118183.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316952153|gb|ADU71627.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 320 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 128/269 (47%), Gaps = 6/269 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF V GSFT AE++ +S + I I GLE +G++L R R +LT+ G Sbjct: 25 DSMAVFVRVVEKGSFTAVAEEMRISSTMIGLHIKGLEQHLGVRLLNRTTRRQSLTDFGHD 84 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ + + +P G LR+A + LG ++L F +PD+ + Sbjct: 85 YYQRCQQILADIRDAESLASRQHQQPQGLLRVACPVSLGVHVLAALNARFQASWPDVTLD 144 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D++ D D +++ + Q +SL+ R+L A+P YL+ P ++ Sbjct: 145 IRLSDRPLDMAEDGIDVMLKIGELEQVNSLVARRLADYRSVVCASPAYLEAFGTPAHPEQ 204 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + F + F D+P P + +N+ ++ + + G GI + P Sbjct: 205 LIDHRCLGFAHPLASGRWQF---IDADKPFSVPVKLVMSINNGEALRRAALQGCGIIMQP 261 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYF 271 + ++ D+ +L+R+ + TP+ V+ Sbjct: 262 EVLLADDLRSGHLIRLFNQMTTPARPVHL 290 >gi|163732779|ref|ZP_02140224.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] gi|161394139|gb|EDQ18463.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] Length = 309 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 7/257 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE + ++LF R R LT TEQG Sbjct: 5 DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEDHLSVRLFQRTTRSLTPTEQGKA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E+ +E + ++ + + P G L +A + LG+ L+ + FL YP++ I+ Sbjct: 65 FYGGACEILSSVENAEAQVVDITENPKGALYVAAPLGLGRRLIAPQVPAFLAAYPEVSIR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A L +P S+ I RK+ + AAP Y+ P S E Sbjct: 125 LRLTDRKVDLTTEGLDLAFFLGQPADSTLRI-RKIADVPRILCAAPSYIAARGNPTSGDE 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 L D+H + P E F W + + + R++ + + + + + G GI Sbjct: 184 LVADRHECLNL--RFPGATE-FQWRLRTEEGLKKYRVTGRYESDDGDVLTDWALAGHGIT 240 Query: 243 LLPDYIVKDNPNLVRIM 259 L P + + D+ R++ Sbjct: 241 LKPVFEISDHLKAGRLV 257 >gi|34496571|ref|NP_900786.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34102425|gb|AAQ58791.1| probable transcriptional regulator LysR family [Chromobacterium violaceum ATCC 12472] Length = 294 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 129/286 (45%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GSFT AA+ LSQ + + I+ LE +G KL R R LTE G + Sbjct: 7 MELFVAVVEKGSFTAAADAHRLSQPMVGKHIAALEQRLGGKLLVRTTRRQQLTELGQHYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L + +P G LR+ +I G L L EF+ +PDI ++L Sbjct: 67 QRCRAILAELAAAEDAAALLRAQPRGVLRVNASITFGTLRLAPLLAEFMARWPDIGVELE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ D D R+ + + S ++ R+L M A+P YL P + +L Sbjct: 127 LSDQLADLVADGYDAVFRIGR-LADSGMVARRLRPYRMMIAASPAYLAARGTPATPADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + F + D W A R S Q N ++ Q + G+GIAL + Sbjct: 186 DHDCLGFS----RWRRDDGWEALAQLHGVRMRASRFQCNQGQALRQLALSGAGIALQAEA 241 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LV +++ + ++ YP + KL+ F +FI Sbjct: 242 LLAEDVAAGRLVSLLDGYLPDPKPMHLIYPADRQPLPKLRVFVDFI 287 >gi|330972303|gb|EGH72369.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 313 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 20/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L T G Sbjct: 15 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 74 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + S +P G LR++ + L L +FL Y D+ + Sbjct: 75 SYYESALRLLAEVEQVEQGITGQSSEPRGTLRLSAPLTFAVAHLGCLLPQFLQRYRDVAV 134 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ I A+P YL PL + Sbjct: 135 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIAAIDRVYCASPGYLAERGTPLEPE 193 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238 +L +H+ + +G W R G + S L V+ + + V G Sbjct: 194 DLHQHDCLPYGH-----SRQVQW-----RFQGAGKASSLNVSGRMRVNNGELLRDAAVAG 243 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI LP +IV +LVR+++D T+ YP+ + + ++ F F+ Sbjct: 244 LGITYLPTFIVGAALRAGSLVRVLDDRRPEPLTLSAVYPQHRQASRLVQMFIEFL 298 >gi|167740866|ref|ZP_02413640.1| putative HTH-type transcriptional regulator YeaT [Burkholderia pseudomallei 14] Length = 305 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF VV R SF+ AAEQL +S + +S++++ LE ++G +L +R R + +TE G + Sbjct: 8 DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ T ++ ++ ++ + P G LRI+++ G+++L L F YP + ++ Sbjct: 68 VYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLNVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D IR+ I LI ++L T + A+P YL P + + Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-PDHLIAKRLATNYRVLCASPGYLARYGTPRQLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + I + F W TV ++ L N +Q+ + G GI L Sbjct: 187 LGAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242 Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P L R++ + P+ V+ YP L + K++ +F+ Sbjct: 243 --RSIWEAGPLLASGELRRVLPEASQPA-NVWAIYPARLAASAKVRVCVDFL 291 >gi|264678911|ref|YP_003278818.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|299532379|ref|ZP_07045771.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|262209424|gb|ACY33522.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] gi|298719617|gb|EFI60582.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 300 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 130/277 (46%), Gaps = 13/277 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +ARSGS AA ++ + +++SR+I LE ++G LF R LTE Sbjct: 1 MDWDHLRFFGELARSGSMAAAARRMGVEHTTVSRRIQALEKQLGAVLFAREGGQWRLTEA 60 Query: 63 GSKLHRVTSEVYHK---LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G +L VT+ + LE + ++ +G +R+ T G +L L L Y Sbjct: 61 GRQLQEVTNTMQSAVDGLERGPLAHAATAEGLAGLVRVGATEGFGTQMLASELARLTLRY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + + L+ + + +S AD I L +P + S++ KL ++ Y YL R+ Sbjct: 121 PLLSVDLLALPRMLHLSSREADIVISLERP-KRGSVVVTKLTDYRLYLYGQREYL--ARK 177 Query: 180 PL--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 PL ++L H+ + + D + E L T+ R P L+ S + + Sbjct: 178 PLVARTEDLRHHSFVHYVDDLLFTRE-LQLLDTLHR----PERFALRSTSITAQYEAVRA 232 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274 G+G+A+LP ++ +P L R++ + + T + P Sbjct: 233 GAGLAVLPAFVADKDPILSRVLPEQACFTRTFWMSMP 269 >gi|168230986|ref|ZP_02656044.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469177|ref|ZP_03075161.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455541|gb|EDX44380.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334404|gb|EDZ21168.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 303 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++ F +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRTFIDFL 290 >gi|222871177|gb|EEF08308.1| predicted protein [Populus trichocarpa] Length = 209 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L L + ++++QI LE V +KL R R +T+T G+ + Sbjct: 7 MRVFVRVVEAGNFTRAADSLDLPKGTVTKQIQALEARVRVKLLNRTTRRVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + + + PSG+LR+ + + ++ L EF YPDIQI L Sbjct: 67 ERAARLLNDFDDLEASMVNTQTAPSGRLRLDVGSSMARLIIIPALTEFCERYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ +++ A+P YL P ELD Sbjct: 127 VGDRLVDLISDNVDCVIRGGE-LSDQSLVARRIGSMNWITVASPAYLARHGVPQHPSELD 185 Query: 188 -KHNLITF 194 KH ++ F Sbjct: 186 TKHQIVAF 193 >gi|187920033|ref|YP_001889064.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718471|gb|ACD19694.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 301 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 132/275 (48%), Gaps = 15/275 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SF+ AA+ L + ++S+S + LE+ +G++L R R + +T+ G+ + Sbjct: 7 MAVFKRVVDASSFSKAADSLEMPRASVSTVVQNLESHLGVRLLNRTTRRVQVTDDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + L P G +R+ T+ ++L +++F YPDI ++L Sbjct: 67 EYCARILAEVSDAESALSSKRQSPRGTVRVDTSATFAAHVLIPVMRDFNARYPDITVKLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++++D+ + DC IR+ + S+L+ R L ++ M AAP YL+ EP + +LD Sbjct: 127 LADRNVDLVQEGVDCVIRI-GVLDDSNLVARSLGSVRMTICAAPAYLEQMGEPATPDDLD 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H+ + + G + P E L + RPI L VN + V G G+ Sbjct: 186 RHHAVNYFSARTGRVYPMEFESDGVL--IKRPIE----GKLAVNEGQVYVASAVEGLGLI 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P ++ ++ L I+ D + YP Sbjct: 240 QTPRFMAAKAIESGALREILRDCHCAPLPLSILYP 274 >gi|317405757|gb|EFV86049.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 288 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD R+F + R+G+ AA L + Q++ R+++ LE + +LF R G T Sbjct: 1 MDWDNARIFLAIYRNGTLRGAAALLQIDQATAGRRLAALEASLDARLFLRTPSGYVPTAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + Q ++Q + SG +R+AT+ + + + + +PDI Sbjct: 61 GEQAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVATSETVASYFIMEAISRLHVQHPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + +++ AD AIR KP + LIQR L + YA+ YL+ EP Sbjct: 121 RVALSTSIQLSNLTRREADLAIRNIKP-DNPDLIQRHLARKEVGLYASRSYLEAHGEPRP 179 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H L+T+ ++P + F P G RI+ +++NS L I++ G GI Sbjct: 180 GTAFAGHTLVTYQQAVLPGWSDTF-----CGEPTGNGRIA-MELNSGLMIIEAVAAGLGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ P+LVRI P + ++ L T +++A + I Sbjct: 234 GELPIHMAPQYPDLVRIWPHRSEP-YDLWLVMHGDLNRTARVRAVADAI 281 >gi|56478289|ref|YP_159878.1| LysR family transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56314332|emb|CAI08977.1| Transcriptional regulatory protein,lysR family [Aromatoleum aromaticum EbN1] Length = 306 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 129/272 (47%), Gaps = 16/272 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA +GSFT A+ L++++S+I+RQ++GLE +G KL R R L+LT G+ Sbjct: 9 VFVRVAEAGSFTAVADYLNVARSAITRQVAGLEAHLGTKLLARSTRRLSLTSSGAAYLEK 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 E+ +E + +L P G +RI+ + G L + +F+ YP++ + L Sbjct: 69 CREILAMVEAAEGDLAGEKRAPRGPIRISVPMSFGIRHLVPLISDFITTYPEVTVDLEFT 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +++ D +R+ + I +L+ R+L T + AAP YL P EL H Sbjct: 129 DRRVNLIEGGLDFTVRISQHID-PTLVIRRLSTSELTVVAAPAYLDRHGRPQHPDELLAH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALLP 245 + +T+ L P W +D GE R LQ+N+ ++++ + G GI P Sbjct: 188 HCLTY-TLAPSS----GWSFRID---GEHRTVPVKGRLQMNNGDALLEAAIRGLGITNQP 239 Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274 ++ L ++ D VY +P Sbjct: 240 TFLSAQAVQAGLLEEVLADYSATELQVYAVFP 271 >gi|326388315|ref|ZP_08209911.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207047|gb|EGD57868.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 301 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 1/188 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF VAR GS AA L L+ S++SR ++ LE +G++L R R L LT +G Sbjct: 7 EMEVFLAVARQGSLARAASHLRLTPSAVSRTLARLEARLGVQLIARTTRALALTAEGESY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++++ + + PSG+LR+ ++ G + L L EF YP I + L Sbjct: 67 RQRVEGLVEEIDSIERDFGTLEQGPSGRLRVNASVPFGTHCLIPILPEFQREYPAITVDL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ AD AIR+ P++ S L RKL M A+P YL EP + +L Sbjct: 127 ALTDTVVDLVDARADIAIRI-GPLRDSRLRARKLGHSRMAVVASPEYLARHGEPATPADL 185 Query: 187 DKHNLITF 194 H + F Sbjct: 186 ADHACLRF 193 >gi|170691642|ref|ZP_02882807.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170143847|gb|EDT12010.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 311 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 145/290 (50%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF AAE++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+V +LE + + +SV P G+LR+++ G + + + ++ YP + + + Sbjct: 67 ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R + H+ A+P YL+ P + +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGMKSSSLIARPIAMAHLLLCASPDYLRRRGTPKTAADL 186 Query: 187 DKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 +HN + + + M+ A V R+S + ++L + VL G+GIALL Sbjct: 187 ARHNYLQYAGVSALDVMQTTGEAARV-------RLSGNLIVNHLEAQRVMVLHGAGIALL 239 Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + LV ++ D + P ++ Y + K+++F +F+ Sbjct: 240 GTEVIGADLAEGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDFL 289 >gi|163738198|ref|ZP_02145614.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis BS107] gi|161388814|gb|EDQ13167.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis BS107] Length = 292 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R + +E +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHVDAIEARLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L+ SG+L + T++ LL L EF +P++ Sbjct: 63 QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSSMSTLLVPALTEFQRQHPELV 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+ + ++ + A AIR P + + + + YA+ Y++ + Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGSPPEQPDNVVQPFMRQQHGLYASASYIERFGPLKGL 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGS 239 ++ H I C +D + A R + E +S VN+ +S+ + + G+ Sbjct: 182 DDMSNHRFI--------CNDDIDSRAPYSRWLRAHAPESALSFRCVNA-VSMQEALLAGA 232 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 GI L + + +P L ++ME + + ++ L T K+++F +F+ +A+ W Sbjct: 233 GIGFLTRWEAERHPGLTQMMEPLPEWAGELWLVTHVDLHRTTKVQSFLSFLKAEAKAW 290 >gi|295681438|ref|YP_003610012.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295441333|gb|ADG20501.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 294 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + +F VA + SFT QL LS S++ + I+ +E +G++LF+R R +TLT +G+ Sbjct: 4 FGGISLFVQVADTRSFTETGRQLGLSSSAVGKSIARMEERLGVRLFHRSTRSITLTAEGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++E + EL ++ P G+LRI+T G L+ L F+ YPDI++ Sbjct: 64 LFLERCRRILGEIEAAEAELSGAAGSPRGRLRISTPQLSG--LIMPALDGFMAQYPDIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ DI + D IR + S L+ R+L + + YL+ P Sbjct: 122 DVDLSDRMADIIEEGFDAVIRTGEQ-HDSRLVSRRLGSCGQVLVGSAAYLERHGTPAHPS 180 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243 EL H + P + W + +P + + + ++ + L G+A Sbjct: 181 ELATHACLLHK--FPATGKFERWPFRLGASEAQPELPQTFSANTIEVLAFLALQDKGLAF 238 Query: 244 LPDYIVKD--NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV+D + +RI + D I + T + +P + + KL+ F ++I Sbjct: 239 LPTFIVRDALSSGALRIVLNDYIEQTVTFWILWPASRYASPKLRVFIDYI 288 >gi|254523395|ref|ZP_05135450.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219720986|gb|EED39511.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 303 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 9/300 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D + +R+ VA + SFT AA QL LSQS +SR IS LE +G+KL R+ R + LT Sbjct: 9 SLDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAISRLEATLGVKLLQRNTRNVALTP 68 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + + + +L + PSG L+I+ G+ +L L L +P Sbjct: 69 DGRQFVDQVAPLLCGFDDAERQLADRPCTPSGTLKISAPSMFGRKVLVPLLGPLLQQHPQ 128 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q++ +L ++ +D+ + D A+R I ++ R L + A+P YL C P+ Sbjct: 129 LQVEAVLSDRLVDLVEEGFDAALRT-GTIADQRMVARPLKPLRWLTVASPDYLARCGAPV 187 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + L H + +L + D+ +L R + P L ++ + G G Sbjct: 188 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREVTPPARMVFDCGDPL--VEAAIAGIG 245 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 I + D+ V D + L R+++ S + YP + +++ KL+ + + A +W Sbjct: 246 IVQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALL--AGEW 303 >gi|13472475|ref|NP_104042.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023221|dbj|BAB49828.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 307 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 143/291 (49%), Gaps = 11/291 (3%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L AR+ GSF A L +S S++ + ++ LE E+G++L R R + LTE+ Sbjct: 2 DRLSGLLAFARTAELGSFIAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRVGLTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + L + P G+LR++T I + +LL L EF+ YP+I Sbjct: 62 GRLFNERVRRILDDIDDAEAMLSRTRETPHGRLRVSTPI-VTYHLLLPVLSEFMSRYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + +++ +D+ + D AIR + + S L+ R + M AAP YL+ P Sbjct: 121 ELDIDFNDRIVDVIEEGIDVAIRSGE-LPDSRLVSRPVGPFRMLLCAAPSYLERHGTPGE 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H I F L + ++ ++ P +++C N+ ++ + G GIA Sbjct: 180 PADLIRHFGINFRFLNSGRLLEWPFITGSAEPQIRSKLTC---NNMEALKGATIAGLGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +PD++V++ + L +++D I +P + K++ F +F+ Sbjct: 237 CMPDFLVREALLDGRLRTVLDDHIDGRGQFRMLWPSNRHLSPKVRVFVDFL 287 >gi|288937639|ref|YP_003441698.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|290512377|ref|ZP_06551744.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|288892348|gb|ADC60666.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] gi|289775372|gb|EFD83373.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 315 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 10/299 (3%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 FD+ + VF VA GSFT A L + S +SR ++ LET +G +L R R ++LTE Sbjct: 5 FDYLADVEVFLAVAERGSFTAGAVALSSTPSVLSRAVTRLETRLGCQLLRRSTRRISLTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 GS + + L+ + E Q SG+++++ G L L + L+PD Sbjct: 65 AGSAYLSQVRQAFEVLDNAERETQGQKGALSGRVKLSAPTTWGHYRLPARLALYRQLHPD 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QI+L + N+++DI + D +R + + S L+ +KL + A+P YL++ PL Sbjct: 125 VQIELNITNRNVDIIAEGFDLVVR-QGHLPDSGLVAKKLEDAALCLVASPAYLRSTARPL 183 Query: 182 S-IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQV-NSYLSIMQYCVLG 238 S I +L H+ +TF ++P + W+ D R I S L V + L ++ + G Sbjct: 184 SKIADLRHHSCLTF--IMPATGKVAEWVFREDGRDISWLPTSSLHVSDDVLGVVSLALQG 241 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 +GI +IV++ LV ++ S YP + +A + + A Sbjct: 242 AGICQSYAFIVQEAIARGELVPVLPAFAGRSRPFSVLYPPHKSQSAAARALITLLTMPA 300 >gi|209518243|ref|ZP_03267070.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501358|gb|EEA01387.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 310 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 146/291 (50%), Gaps = 11/291 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +GSF AAE++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRHVVEAGSFVGAAEKMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ +L+ + +SV P G+LR+++ G + + + ++ YP + + + Sbjct: 67 ERLSQALTELDEAGQAVGAASVVPHGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R++ T H+ A+P YL+ P S+ +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLRKHGTPKSVADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN + + + +E +AT D + L VN ++ + G+GIA L Sbjct: 187 ARHNYLQYAGV--SALE----VATGDAASRVRQSGNLIVNQLEALRVVVLHGAGIATLGT 240 Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++ + +V ++ D + P ++ Y + K+++F +F+ + Sbjct: 241 EVIGSDLAEGRIVPLLVDEVPPRELPIHVIYTSRRHLSAKVRSFVDFLVAR 291 >gi|153215012|ref|ZP_01949771.1| transcriptional regulator, LysR family [Vibrio cholerae 1587] gi|124114986|gb|EAY33806.1| transcriptional regulator, LysR family [Vibrio cholerae 1587] Length = 301 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRGFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFLDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|27367782|ref|NP_763309.1| transcriptional regulator [Vibrio vulnificus CMCP6] gi|27359355|gb|AAO08299.1|AE016813_51 Transcriptional regulator [Vibrio vulnificus CMCP6] Length = 305 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LT+ G L Sbjct: 11 IRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGKALF 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ + + G++RI LG+ ++ + +F+ YP +++ L Sbjct: 71 AQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYPQVRVDL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K ++ S + RKL+ + M YA+P YL P +EL Sbjct: 131 DFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRPEHPKEL 189 Query: 187 DKHNLIT 193 DKH +T Sbjct: 190 DKHACLT 196 >gi|33603201|ref|NP_890761.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33568832|emb|CAE34590.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 307 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 142/301 (47%), Gaps = 18/301 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ A+ L + +S +SR+IS LE +G++L R R L LT G Sbjct: 3 DLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+ + +++ +P+G + ++ + + Q +L L EFL +P + Sbjct: 63 ERYLHYCQEMTASARAAEDAMRQLQSEPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL++ N+ +D+ + D A+R+R + + + L+ + L A+P YL+ P + Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 QEL H ++F D + W T R GE +Q N ++ + Q V G Sbjct: 183 PQELASHRTLSFND----PQNEVRWPLTNQR--GESVEVAVQPVLASNDFIVLTQAAVRG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294 GIALLP + LVR++ D +P V+ YP G + A R F+ FL Sbjct: 237 RGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYP---SRRGMMPAVRAFLDFLAK 293 Query: 295 R 295 R Sbjct: 294 R 294 >gi|89094791|ref|ZP_01167725.1| LysR protein [Oceanospirillum sp. MED92] gi|89080956|gb|EAR60194.1| LysR protein [Oceanospirillum sp. MED92] Length = 303 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 143/303 (47%), Gaps = 14/303 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++L +F+ + + GS AA +L ++ S+S+ + LE +G+ LF R R + LTE G Sbjct: 6 FNQLTIFHAIVQEGSIRGAARKLEIAPPSVSQALKQLENHLGLPLFTRSTRSIELTEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +LH T L+ +Q+ S K SG++ I + + L+ EF LYPDIQ+ Sbjct: 66 QLHEETRSALSTLDFALESVQDLSEKASGRVSITLPHFVFEIFLKPIYAEFCDLYPDIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L +K ++I + D IR + +++ + ++ + +A+P Y+ P + Sbjct: 126 EISLTDKTVNILDEGIDLGIRFGERLEAGMVARQLTPDLEAALFASPEYVAKYGVPKQPE 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H LI + L P +E + ++ P S + VN ++ G Sbjct: 186 DLQHHRLIRYRFSASNQLAPLLLEHKGEVLNIEMP------SSIIVNDTNAMTDAASKGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI L IV + LV +M+D P +Y + + + +++ +F+ KA+ Sbjct: 240 GIGCLVTPIVSEQFKRGELVPLMKDYWHPFSGLYLFFVQNSQKARRVRVLVDFLLEKAKQ 299 Query: 297 WKF 299 ++ Sbjct: 300 LEY 302 >gi|268593273|ref|ZP_06127494.1| transcriptional regulator, LysR family [Providencia rettgeri DSM 1131] gi|291311171|gb|EFE51624.1| transcriptional regulator, LysR family [Providencia rettgeri DSM 1131] Length = 298 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 15/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F+ VAR SFT AA +L +SQS++S + LE + +L R R + TE G Sbjct: 5 NFNELQIFFAVAREKSFTKAAAKLGVSQSALSHAVKALEERLNARLLTRTTRSVAATEMG 64 Query: 64 SK----LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 K L +E+ H+LE I+L ++ SG +R++T ++LL LK FL Y Sbjct: 65 EKIIACLEPRLAELNHELEAI-IQLNGAA---SGNIRLSTGEHAARSLLWPKLKPFLRAY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PDI ++L++DN ++I + D IRL + + + + + + +P Y + Sbjct: 121 PDINVELVVDNGFVNIVDEGFDAGIRLGESVDKDMVAVKIGSDMRLAIVGSPSYFETQGI 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P + +L H I +P ++W + R+ L N + + G Sbjct: 181 PRTPHDLQHHRCINM--RLPTAGGLYHWEFEKEGKSLRVRVEGQLTFNLLSERIDAALSG 238 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 GIA +P+ +++ + LV+I+ D P+F+ Y+ Y Sbjct: 239 FGIACVPEDTIQEPVKSGKLVQILSD-WCPAFSGYYLY 275 >gi|187928411|ref|YP_001898898.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725301|gb|ACD26466.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 300 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 129/294 (43%), Gaps = 16/294 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS + AAE L +S++ ++R ++ +E G +L +R R + LT G Sbjct: 9 VFVAIVEHGSLSAAAEGLDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + + P G LRIA L Q L + +L YP + L++D Sbjct: 69 CRQMLEIASQMAVSEGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ I++ + D A+R+ + +LI R L AAP YL P +Q+L H Sbjct: 129 NRTINLVEERIDLAVRITNDLD-PNLIARPLGMCESVVVAAPSYLAAHGTPRRVQDLAVH 187 Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 N +T FG + K E A D P+G L N + ++ G+GIAL P Sbjct: 188 NCLTYSYFGKSLWKFTEAKTG-APTDVPVG----GNLSANESMVLLAAAREGAGIALQPV 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + + LVR++ D + + ++ Y + L+A +F+ DW Sbjct: 243 FAAAPLIASGQLVRLLPDYVPQALGIHGVYSSRRQMPSALRAMLDFLV----DW 292 >gi|206563530|ref|YP_002234293.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198039570|emb|CAR55538.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 304 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +G+FT AA L L+ +++S I LE E+ +KLF R RG++LTE G + Sbjct: 10 LHVFMTVATAGNFTRAAAALGLTPAAVSLSIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 R T Y ++ + L+++ +PSG LR+ T + L + L+ L F YP +++++ Sbjct: 70 RQTEPAYRQVMQARDALKDARSEPSGLLRV-TALPLARLLVIAPVLAPFRERYPKVRLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +N+ +DI+ + D IRL +Q + R + A+P YL P SI +L Sbjct: 129 RYENELVDIAKEGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGAPASIAQL 188 Query: 187 DKHNLITF 194 ++H I F Sbjct: 189 ERHACIRF 196 >gi|206559339|ref|YP_002230100.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035377|emb|CAR51253.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 324 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 140/287 (48%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ +L F YPDI ++L Sbjct: 67 EHCMKIIAEIAEADASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPDITLELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNEIADLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + F W+ +D E R++ + VN + + + G G+ Sbjct: 186 EHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP + K++ F ++I Sbjct: 244 FMVLPNLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWI 290 >gi|221066521|ref|ZP_03542626.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220711544|gb|EED66912.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 300 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 130/277 (46%), Gaps = 13/277 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +ARSGS AA ++ + +++SR+I LE ++G LF R LTE Sbjct: 1 MDWDHLRFFGELARSGSMAAAARRMGVEHTTVSRRIQALEKQLGAVLFAREGGQWRLTEA 60 Query: 63 GSKLHRVTSEVYHK---LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G +L VT+ + LE + ++ +G +R+ T G +L L L Y Sbjct: 61 GRQLQEVTNTMQSAVDGLERGPLAHAATAEGLAGLVRVGATEGFGTQMLASELARLTLRY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + + L+ + + +S AD I L +P + S++ KL ++ Y YL R+ Sbjct: 121 PLLSVDLLALPRMLHLSSREADIVISLERP-KRGSVVVTKLTDYRLYLYGQREYL--ARK 177 Query: 180 PL--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 PL ++L H+ + + D + E L T+ R P L+ S + + Sbjct: 178 PLVARTEDLRHHSFVHYVDDLLFTRE-LQLLDTLHR----PERFALRSTSITAQYEAVRA 232 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274 G+G+A+LP ++ +P L R++ + + T + P Sbjct: 233 GAGLAVLPAFVADKDPILSRVLPEQACFTRTFWMSMP 269 >gi|170694898|ref|ZP_02886048.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170140258|gb|EDT08436.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 304 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 138/294 (46%), Gaps = 22/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF+ AA +L L Q ++S+ ++ LE +G +L R RGL T G + + Sbjct: 7 METFVTVVDAGSFSAAARRLKLGQPAVSKAVAQLEERLGARLLLRSTRGLAPTAAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 H+ + + ++ESS SG+LRI + + + LK FL +P++ I ++ Sbjct: 67 EHALRAIHEADQAEQAVRESSDGLSGQLRIGAAVTFARLHVLPALKSFLHQHPNLSIDIV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ + D A+R+ + SS+ R++ + P Y P + +L Sbjct: 127 LDDRSVDLLEEGVDVALRM-GTLDDSSMTARRIASGRRVVVGTPSYFAEAGVPQTPVDLG 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-----MQYCVLGS-GI 241 +H + + + E +WL + D + S + ++ +S+ M+ VL G+ Sbjct: 186 RHQAVVYS--VRGGGE--SWLFSRD----DGSDSTVTLSGRISVNAAEGMRTAVLAHMGL 237 Query: 242 ALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+ +++ P L ++ D P+ ++ +P T K +AF F+ Sbjct: 238 AVASEWMFA--PELADGTVQAVLTDWTLPTIDLWAVFPAGRMTTAKARAFVAFV 289 >gi|15890711|ref|NP_356383.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15158982|gb|AAK89168.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 295 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 17/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F VA +GSF A +L +S S++ + I+ LE E+G++LF R R +TLTE G Sbjct: 7 LGIFIQVAEAGSFVAAGHRLGISGSAVGKAIARLEDELGVRLFNRSTRSMTLTEDGGFFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ET Q +L S P G+LR+ ++ L LL + F+ YPDI + L Sbjct: 67 DTCRRIQSEYETVQAQLSRSQAIPRGQLRV--SLPLAGMLLMPTISAFMDAYPDINLDLD 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D IR I+ + L+ RKL T AA YL+ P ++L Sbjct: 125 FTDRLVDVIEEGFDAVIRT-GDIRDTRLMSRKLGTFKHRIVAARGYLEAHGWPTVPEDLA 183 Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H + G P + +D P+ S L+ YL+ + G+ Sbjct: 184 RHRCLHHRFANSGKFEPWPLVRDGREIRIDLPVATV-ASTLEPLIYLAERSF-----GVT 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + V LV +++D + + T +P + K++AF +++ Sbjct: 238 CLPSFAVASEIAEGKLVSLLDDYVADTGTFCVLWPTNRYLSPKVRAFVDYM 288 >gi|253686726|ref|YP_003015916.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753304|gb|ACT11380.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 298 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+ F VV +GS T AAEQL + S ISR + LE ++G L +R R L+L+ Sbjct: 1 MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G+ V H +E + ++ +PSG+LR+ + Q+++ + EF YP Sbjct: 61 EEGTMFLEHARGVLHAVEHAEEQVLLRHEQPSGRLRVNSASAFMQHVIVPLVPEFRRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D+ ID+ + D AIR+ ++ S++ R L +H A+P YL+ P Sbjct: 121 KIILELNTDDFVIDLLEQHTDIAIRI-GTLKDSTIHARPLGASKLHIVASPEYLQQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +++ L H + F +E N W P L ++ + Q + G Sbjct: 180 RTVESLADHICLGFTQ-----VESLNHWPLRHGLQNFYPITPALLASNGEILRQLALRGE 234 Query: 240 GIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + ++++D+ R++ E+ + S VY Y + ++ F +F+ Sbjct: 235 GIVRMSTFLIRDDLAAGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDFM 289 >gi|104782192|ref|YP_608690.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95111179|emb|CAK15899.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 303 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 12/290 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A++GSFT AA L L++S++ + I+ LE + ++L R R L+LT++G Sbjct: 11 AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGQVAFER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L+ + + + KP+G LR+ + GQ + L +L +P+++ + Sbjct: 71 WRQILDDLDEVETAMAQRRNKPTGTLRLTAPLSFGQRHVLPILDAYLKQWPELRADIRFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ P + S L+ R + A+P YL+ P +L H Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPEYLRQHGTPQVPADLYGH 190 Query: 190 NLITF--GDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I F G+ P L + P L ++S +++ G G+ LP Sbjct: 191 DKIAFLAGEKASPWRFRTEEGLHLCEEP------GRLNIDSSEAMLDGARAGFGLIHLPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 YI D+ LV ++ D P+ + YP + +++ F + + ++ Sbjct: 245 YITGDDLRSGALVEVLHDFRPPADPIRIVYPSRRHLSPRVRGFIDLLVVR 294 >gi|91779298|ref|YP_554506.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691958|gb|ABE35156.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 302 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 19/299 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF+ AA L +S S++S + GLE + ++LF R R + LTE G +L Sbjct: 8 ELTAFVAIAHQRSFSAAARTLGVSPSALSHAMRGLEARLDVRLFNRTTRSVALTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R LE E + +PSG +RI+ + + L+Q L FL YPDI ++ Sbjct: 68 LRRVGPAIADLEDAVNEAASARNRPSGSIRISASESAARPLVQHVLPGFLATYPDIHVEF 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D + +DI D D IR+ + + + R + A A+P Y+ +P + +L Sbjct: 128 VVDTRLVDIVADGFDAGIRVLQDVPRDMIATRFGPDMRFIAVASPDYVARNGKPKAPHDL 187 Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H I F G L +E A+VD + P + + + +++ + G GIA Sbjct: 188 ARHRCIRFRFESGALYRWDLEYRGKGASVD--VDGP----MTLGNLNLMVEAALAGIGIA 241 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + D + + + LV+++ + +PSF + YP L+ F + R+W Sbjct: 242 WVSDQLAAEYLASGRLVQLLAE-WSPSFPGLCLYYPANRHPPTALRLFAQSV----REW 295 >gi|83716532|ref|YP_438306.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|257141335|ref|ZP_05589597.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650357|gb|ABC34421.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 314 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 25/299 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + +RVF VA + F+HAA QL+LS S ++R + LE+ +G+KL R R LT Sbjct: 1 MNHLFSAMRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + L + S +G L + + L G E+ +P Sbjct: 61 EVGVRYAEGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ +++ + ++D+ D I I S SL+ R L+ + A A+P YL P Sbjct: 121 DVSLRITQTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIM 232 +L +H +I + W +D PI VN+ Sbjct: 181 ARPADLARHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPI--------TVNNAPMQR 228 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286 Q + G GI LLP+Y+V ++ L R++ D + T+ YP GK++AF Sbjct: 229 QLVLAGGGIGLLPEYLVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAF 287 >gi|91777469|ref|YP_552677.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690129|gb|ABE33327.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 299 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 134/294 (45%), Gaps = 22/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF+ AA +L L Q ++S+ I+ LE +G +L R RGLT T+ G + + Sbjct: 7 MEAFVTVVDAGSFSAAARRLKLGQPAVSKSIAQLEEHLGARLLLRSTRGLTPTDAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++ESS SG+LRI + + + LK FL +P + I LI Sbjct: 67 EHARRAIDEADQAEQAVRESSGGLSGRLRIGAAVTFARLHVLPALKTFLDQHPKLSIDLI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID+ D A+R+ + S++ +++V P Y P + +L Sbjct: 127 LDDRSIDLLEQGVDVALRM-GTLDDSTMTAKRIVRGRRLVVGTPQYFAQAGIPTTPADLS 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GI 241 +H I + G+ +D +A R+S S M+ VLG G+ Sbjct: 186 RHQAIVYSLRGGGESWSFSRDDGAEIAVAV----TGRVSV----SAAEGMRTAVLGHVGL 237 Query: 242 ALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+ +++ +P L ++ + PS V+ +P T K +AF F+ Sbjct: 238 AVASEWMF--SPELADGTVQAVLTEWTLPSIDVWAVFPSGRMATTKARAFVAFV 289 >gi|13473402|ref|NP_104969.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14024151|dbj|BAB50755.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 293 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G AA +L L+ +++SR+I+ LE + KLF R G LT Sbjct: 1 MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + SG +RI G L L E L+ ++ Sbjct: 61 GERFLDIAERMEGEMIAARSTISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHREL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P + L+ KLV + +A+ Y P + Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYSLGLFASRAYADANGLPKT 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL +H LI + DLI D+ + D + ++S L + G+GI Sbjct: 180 AAELGRHPLIGYVPDLIVSPSLDYAAEFSADWR------TSFAISSALGQAEAVRSGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290 +L ++ + P LV + D + P Y+ Y E+++ +++ FI Sbjct: 234 GILHTFVARSMPELVAV--DAVAPIRRAYWLVYHESVRPLRRIQIVAGFI 281 >gi|330809716|ref|YP_004354178.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377824|gb|AEA69174.1| Putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 293 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 20/289 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A + SF+ A L +S S++ + ++ LE +G++LF+R R +TLT +G+ Sbjct: 10 FVRAAETRSFSEAGRALGISSSAVGKSVARLEERLGVRLFHRSTRSITLTAEGTLFLERC 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E ++EL E+ P GKLR+ ++ L +L+ L F+ YP I++ L + Sbjct: 70 RRILCEVEAAELELSETRKAPRGKLRV--SLPLVADLVMPTLMAFMRRYPSIELDLDFSD 127 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +DI + D IR +P S L+ R L + +P YL P +L +H Sbjct: 128 RLVDIIEEGFDAVIRTGEP-NDSRLMSRPLGAFKLVVVGSPRYLAEHGTPQVPTDLLRHA 186 Query: 191 LITFGDLIPKCMEDFNWLATVDRPI---GEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 + + P W PI G+P + + L N+ +++ GIA + Sbjct: 187 CLLYK--FPSTGRMQVW------PINGEGQPDLNLPATLVCNTTEALLYVVRDALGIACV 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+ V+D + LV +++D T +P + KL+ F +F+ Sbjct: 239 PDFTVRDAIASSELVTVLDDFNRHQSTFRMLWPSSKHLAPKLRVFIDFM 287 >gi|322831639|ref|YP_004211666.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321166840|gb|ADW72539.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 298 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 19/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V SGSF+ AAEQL S +SR + LE ++GI L R R ++LT Sbjct: 1 MRASSEELITFVTVVESGSFSRAAEQLGQDNSVVSRTLKRLEQKLGITLLNRTTRQISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G + ++ H++ + +L E+ P G LRI + +++ + EF +P Sbjct: 61 HEGERYFVRVQKILHEMAAAEDDLLENRDDPQGLLRIDAATPVILHVISPLVAEFTERFP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L +I++ D AIR+ + ++ SSL RKL+ + A+P YLK P Sbjct: 121 KMSLALFSSESNINLIDHKVDVAIRVGE-LEDSSLRARKLMLSYRSVLASPDYLKKWGTP 179 Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 S +L KH + F +++ P D L P IS S ++ + C Sbjct: 180 QSADDLLKHRCLGFNEVVALNKWPLLCADGQQLTVT------PFISS---GSGETLRRLC 230 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GIA L D++ ++ +LV+++ D++ + ++ Y + +++ F +F+ Sbjct: 231 LQGNGIACLSDFMTDEDVARGDLVKLLVPDIMRIAMPLHAVYYSDQTVSTRIRCFIDFL 289 >gi|168463948|ref|ZP_02697865.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633239|gb|EDX51653.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 303 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++ F +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRTFIDFL 290 >gi|13940787|gb|AAK50453.1| unknown [Vibrio vulnificus] Length = 305 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LT+ G L Sbjct: 11 IRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGKALF 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ + + G++RI LG+ ++ + +F+ YP +++ L Sbjct: 71 AQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYPQVRVDL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K ++ S + RKL+ + M YA+P YL P +EL Sbjct: 131 DFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRPEHPKEL 189 Query: 187 DKHNLIT 193 DKH +T Sbjct: 190 DKHACLT 196 >gi|326315466|ref|YP_004233138.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372302|gb|ADX44571.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 299 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 138/286 (48%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 ++VF V SGSF AAE L SS++ + LE + +L R R ++LT +G + L Sbjct: 7 MQVFLRVVESGSFVRAAETSGLPASSVTSIVKRLEKHLQTRLLNRSTRSISLTPEGERYL 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 HR E+ + T+ L+ + +P G+LR+ + L+ +L +F YPDI + + Sbjct: 67 HRC-REILDLIYETESGLRPAE-RPRGRLRVDMPSGIAHALVLPHLGDFQQRYPDIHLLI 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++++ +D+ + DC IR + S+LI R+L + AAP Y K P S+++L Sbjct: 125 GVNDRQVDLIQEGVDCVIRT-GALNDSTLIARRLGALRWITCAAPSYFKENGTPDSLEDL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + + + +++ + P L VN +Q + G G+ LP+ Sbjct: 184 QRHRAVHYFSSTTRGGGELHFVQD-GVSLAHPVPGTLAVNETGLYLQLGLNGVGLIQLPE 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +V+ D+ L ++ D P V YP + ++AF ++ Sbjct: 243 VLVRKHLDSGELREVLADKRPPPMPVSLLYPHRRFLSPAMQAFTDW 288 >gi|260462991|ref|ZP_05811194.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259031112|gb|EEW32385.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 297 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 124/279 (44%), Gaps = 6/279 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F VAR SFT AA QL +SQS++S + LE +G++L R R ++ TE G + Sbjct: 7 NELTAFLAVAREKSFTRAAAQLGVSQSALSHTVRALEERLGVRLLTRTTRSVSPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + R ++E L KP+G +RI +L L +FL +PDI+++ Sbjct: 67 MVRSVGPRLDEIEAELAALSALREKPAGTIRITAGEHSADVILWPALAKFLPDHPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+D DI + D +RL + + + R + M +P Y +P + Q+ Sbjct: 127 IIVDYSLTDIVAERFDAGVRLGEQVARDMIAVRIGPDMRMAVVGSPAYFAIHPKPRTPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L HN I +P + W R + L N+ M + G G+A L Sbjct: 187 LTNHNCINL--RLPTYGGLYAWEFEKAGRELKVRVEGQLVFNTSALRMNAVLAGLGLAYL 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 P+ V + LVR++ D P + YP + T Sbjct: 245 PEGQVTAHLADGRLVRVLADWCAPFPGYHLYYPSRRQAT 283 >gi|187930747|ref|YP_001901234.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|187727637|gb|ACD28802.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 312 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 7/295 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF AA+ L +S + ++R ++ LE +G +L R R L+LT+ G Sbjct: 7 MRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ ++ + S G LRI + G ++L L F LYP++ + Sbjct: 67 QRCAQILLDIDEAESLATSRSQALVGGLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI D D I + + S L+ R++++ M A P YL+ P +++ Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDIA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246 +H +I P+ ++ + I P L V S +M VL GIA+L Sbjct: 187 EHRVIAMWH--PQLRHEWEMSTADGQSISVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 Y+ + ++ LVR++ P ++ YP K++ F +++ +A + K Sbjct: 244 YMARPDLESGRLVRLLPQYKLPQRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298 >gi|66767763|ref|YP_242525.1| LysR family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66573095|gb|AAY48505.1| transcriptional regulator lysR family [Xanthomonas campestris pv. campestris str. 8004] Length = 304 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF VAR GSFT AA QL +SQS++S + LET +GI+L R R +++TE G + Sbjct: 12 NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMR 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L KP+G +RI T L L + L YPD++++ Sbjct: 72 LFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVE 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D DI + D IRL + + M AAP Y + P E Sbjct: 132 ITIDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPRQRMAVVAAPSYFVHHTIPAVPAE 191 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN I T G L+P E V R G+ N ++++ + G+G Sbjct: 192 LAQHNCISLRLPTHGGLLPWDFEKDGREQKV-RVDGQ-----WTFNGSSAMLRAALAGAG 245 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +A LP+ +V D+ L R+++D P Y YP +++ LK Sbjct: 246 LAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALK 292 >gi|320323309|gb|EFW79397.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320327506|gb|EFW83518.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 302 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H+ + +G W V G+P I ++ N+ + V G G Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP +IV + +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|190574983|ref|YP_001972828.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|254521569|ref|ZP_05133624.1| transcriptional regulator [Stenotrophomonas sp. SKA14] gi|190012905|emb|CAQ46537.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|219719160|gb|EED37685.1| transcriptional regulator [Stenotrophomonas sp. SKA14] Length = 330 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 3 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R + + L Q L L +FL YP ++ Sbjct: 63 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGVVRASVPVSLAQMQLPKLLPKFLEQYPKVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +DI + D A+R+R + SL+ R + A+P YL P Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL +H ++ D + E V R +PR++ S+++ G GI Sbjct: 183 PEELTQHVTLSISEDEARQRWELHGPEGEVRRVDLQPRVAGFDFPLLQSMVKD---GFGI 239 Query: 242 ALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 +LP+ + D VR E +V+ P +++ C+ G L A R FI Sbjct: 240 TMLPETVCADA---VRNGELEVVLPDWSLPQGVCHAVFASRRGLLPAVRVFI 288 >gi|238756247|ref|ZP_04617564.1| hypothetical protein yruck0001_34410 [Yersinia ruckeri ATCC 29473] gi|238705550|gb|EEP97950.1| hypothetical protein yruck0001_34410 [Yersinia ruckeri ATCC 29473] Length = 323 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 149/302 (49%), Gaps = 36/302 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L + + G + AA QL++S S++S+ +S LE+++G L R R LTLT+ G+ L Sbjct: 22 QLEILVKIIECGGLSEAATQLNISPSAVSKSLSHLESQLGTMLLKRTTRSLTLTDAGTYL 81 Query: 67 HRVTSEVYHKLETTQIELQES-------SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 YH+ ++ ES +P G+LR+ +I G + L + + Y Sbjct: 82 -------YHRATKLLLDFDESLNTTAGFYNRPQGELRLTCSIAFGYSHLITLVNNYRTRY 134 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 PD+ + + L++ ++++ D AIR+ P + SL RKL TIH A+P YLK Sbjct: 135 PDVDLYIDLNDNFVNLNESNFDIAIRVASTPPDNYSL--RKLSTIHWAYCASPEYLKKMG 192 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P S+Q+L H + + L P ++D + +V + + R S +Q NS L +++ + Sbjct: 193 IPTSVQQLTNHQCLLYPGLTP-ILKDTDEAGSVH--LLKLR-SPIQANSSLVLLKAVLEH 248 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITP----------SFTVYFCYPEALKNTGKLKAFRN 288 GIA LP Y++ D I ITP + +Y Y + + K+++F + Sbjct: 249 QGIAYLPTYLLGD-----AIQRGEITPLALDGEITHATHGLYALYFPSRYSNPKVRSFID 303 Query: 289 FI 290 F+ Sbjct: 304 FL 305 >gi|320324476|gb|EFW80553.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 301 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 11/255 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ PSG LRI + G +L L F L +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL QSS LI R + + AAP YL P + Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARFMQDYTLTICAAPSYLARHGTPAHPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +L HN + F P E W T P GE + + N+ + Q Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239 Query: 238 GSGIALLPDYIVKDN 252 G G+ +LPD +V+ + Sbjct: 240 GMGVVMLPDALVQRD 254 >gi|319780964|ref|YP_004140440.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166852|gb|ADV10390.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 293 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G AA++L L+ +++SR+I+ LE + KLF R G LT Sbjct: 1 MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + + + SG +RI G L L L+ ++ Sbjct: 61 GERFLDIAERMEGDMIAARSTISGEGDDVSGTVRIGAPDGFGVAFLAKRLGALTALHREL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P + L+ KLV + +A+ Y+ P + Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYSLGLFASRAYVDANGLPKT 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL +H LI + DLI D+ + D + ++S L + G+GI Sbjct: 180 AAELGQHTLIGYVPDLIVSPSLDYAAEFSADWR------TSFAISSALGQAEAVRSGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290 +L ++ + P LV + DV+ P Y+ Y E+++ +++ +FI Sbjct: 234 GILHTFVARSMPELVPV--DVVAPIRRAYWLVYHESVRPLRRVQIVASFI 281 >gi|161525152|ref|YP_001580164.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342581|gb|ABX15667.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] Length = 310 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 13/281 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA +G FT AAE+L+L+ S++S+ ++ LE +G+ LF R R L LT+ G + Sbjct: 21 FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRKLVLTDAGRAFYETC 80 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + +L + L +P G +RIA G+ + L F YPD++ L+ + Sbjct: 81 TRILAELAEAEAVLAAQQREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 140 Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D++ + D A+R+ P SL +R L + AAP YL+ P ++ +L +H Sbjct: 141 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRFLGRERLIFCAAPAYLEKNGIPQTVDDLQEH 200 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245 I +G P + A D + + PRI + L+ ++ G G+A L Sbjct: 201 ACIVYGR--PDGAQSLWSYAAADGQVEQRVVRPRIVAGDAEAQLAFVRA---GLGVAQLA 255 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 ++V+D+ LV I+++ T + +P A + T K+ Sbjct: 256 TWLVRDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKI 296 >gi|295097113|emb|CBK86203.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 299 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 134/289 (46%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE L L + S+SRQI LE +G +L +R R ++LT+ G + Sbjct: 7 MQLFLRVAELESFSRAAETLSLPKGSVSRQIQALENALGTQLLHRTTRRVSLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ SG+LR+ + + +N++ L FL +P I+++L Sbjct: 67 ERAKDLLMNLDELDGMFLHDPSTISGRLRVDMPVAIARNVVIPKLPAFLQQFPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + + A+P YL P ++ +L Sbjct: 127 SSDRLVDVIREGFDCVVRVGN-LKDSGLIARPLGKLSVINCASPDYLTRFGYPETLDDLA 185 Query: 188 KHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H LI + + P+ E +N AT G L VNS + C+ G GI + Sbjct: 186 SHALIHYSATLGTRPQGFEYYNGSATQWVKTG----GVLTVNSTETYQAACIAGLGIIQV 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P V+D LV I+ V YP + ++ F ++ Sbjct: 242 PRVGVRDVLRTKKLVEILPQYRAEPMPVSLIYPHRRNLSRRVHVFMEWL 290 >gi|160899140|ref|YP_001564722.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364724|gb|ABX36337.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 300 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 134/293 (45%), Gaps = 13/293 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +ARSGS AA QL + +++SR+I LE ++G LF R A TE Sbjct: 1 MDWDHLRFFGELARSGSMAAAARQLGVEHTTVSRRIQALEKQLGAVLFEREAGQWRPTEA 60 Query: 63 GSKLHRVTSEVYHK---LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G +L V + LE + + +S PSG +R+ T G LL L + Sbjct: 61 GRQLLGVADAMQRAASGLERMPLAAESTSQGPSGLVRVGATEGFGTQLLAPQLAALTQRH 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I L+ + + +S AD I L +P + S+++ KL + Y YL R Sbjct: 121 PLLSIDLLALPRLLHLSRREADIVISLERPTRGSAVVT-KLTDYRLFLYGQREYL--ARR 177 Query: 180 PL--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 PL ++L H+ I + D + E L+T + +P + S + + Sbjct: 178 PLVARTEDLRHHSFIHYVDDLLFTRE-LQLLST----LFQPERFAFRSTSITAQYEAVRA 232 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+A+LP +I +P L R++ + T + P + +++A F+ Sbjct: 233 GAGLAVLPAFIADRDPVLSRVLPAEACFTRTFWMSMPSDARQVQRIEAVWGFL 285 >gi|114773248|ref|ZP_01450483.1| transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] gi|114546367|gb|EAU49276.1| transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] Length = 304 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 138/297 (46%), Gaps = 26/297 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + +F V +GSF+ A+ L ++ S +S++I+ LE + ++L YR R L+LT Sbjct: 1 MQAKADDIFLFVQVVDAGSFSKVAQLLEITNSVVSKRIARLEKALNMQLLYRSTRKLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQES-------SVKPSGKLRIATTIDLGQNLLQGNLK 113 + G L Y K + Q LQE+ S SGK++I + L + Sbjct: 61 DGGKTL-------YAKAKVAQDALQEAHDAVCGYSDSISGKIKITVPSVSARLTLTTAIA 113 Query: 114 EFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173 EF LY ++ I++I+D++ ++ + D AIR ++ SSL+ R+LV H A P Y Sbjct: 114 EFCRLYKEVTIEMIIDDRFANLIEEGYDLAIR-TGYLEDSSLLARRLVDSHWVIVATPQY 172 Query: 174 LKNCREPLSIQELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLS 230 LK P S EL HN +T + + P +W + + E N + Sbjct: 173 LKQQGIPESSNELKFHNCLTYKYNEAQPN-----HWRFLSAEGEYTEVVQGNFVANDLNA 227 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + Q + G GIA LP +V D N L +++ D +Y YP+ KLK Sbjct: 228 LHQAVIAGLGIAYLPRVLVYDDLQNGELTQLLSDQTAKRVGIYAVYPKMRSPDTKLK 284 >gi|330897918|gb|EGH29337.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 136/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S I + I LE +G++LF+R R + LT +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LE ++EL + P G+LRI ++ L L+ + +F+ YPDI++ + Sbjct: 69 CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ +++ + + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHGTPRHPGDLSQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P +W + R G + Q N+ ++ G GIA LPD Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ N L+ +++D + T +P + + +L+ F +F+ Sbjct: 242 FMILSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288 >gi|319781364|ref|YP_004140840.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167252|gb|ADV10790.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 305 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 41/305 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F V +GSFT AA +L ++++ +S QI LE E+G L R R +T TE+G Sbjct: 8 NRLAYFTTVMETGSFTAAANRLGVAKAVVSHQIGKLEEELGATLLQRTTRRVTPTEEGRL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + E E+ +V+PSG LR+ +D G ++ + +L YP ++++ Sbjct: 68 FYDRAMIILREAEAAYGEISRGTVEPSGTLRLTAPLDYGTKMVAPVMAAYLRTYPQMRVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 I D+ ++ + D IR+ + SS R+L TI A+P + + Sbjct: 128 AIFDDAVSNLVDEQIDLGIRVGW-LTDSSNQARRLGTIRQIVVASPGFAASLPP------ 180 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGE---------------PRISCLQVNSYL 229 DL P+ W+ R IG+ P + C + + L Sbjct: 181 ----------DLTPRQARSLAWVGNTQLRGIGQWLFSRDGETVLTELNPVLMCDKSPAAL 230 Query: 230 SIMQYCVL-GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + CVL G G+ + PDY V D+ LV + D PS ++ +P A K++ Sbjct: 231 A----CVLVGIGLGVFPDYSVSDDIAEGRLVPVFADWSLPSGGIHAVFPPARFRPAKVRT 286 Query: 286 FRNFI 290 F + + Sbjct: 287 FVDLL 291 >gi|257482701|ref|ZP_05636742.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986619|gb|EGH84722.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012234|gb|EGH92290.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H+ + +G W V G+P I ++ N+ + V G G Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP +IV + +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|86159924|ref|YP_466709.1| LysR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776435|gb|ABC83272.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 319 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 25/296 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA G F+ AA L + S++++ ++ LE +G +L R R + LT +G Sbjct: 11 EMEAFATVAELGGFSAAARALGRTPSALNKLVTRLEARLGARLLTRTTRAVRLTAEGEAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 HR + ++E ++E + P G++R+ + G + L + FL P I + + Sbjct: 71 HRRAMRILAEVEDAEVEAAGGA--PRGRVRVNANLPFGVHCLLPRVPAFLQANPGITLDV 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +D+ AD AIR+ P+++S L+ RKL + A+P YL P + +L Sbjct: 129 VLSDEVVDLVERRADVAIRV-GPLRASRLLARKLGESPVAVVASPAYLARRGTPRTPADL 187 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242 D H I F + ++D+ +L GE P ++ + Q + G+G+A Sbjct: 188 DAHERIGF--TFARALDDWPFLRG-----GEALRVPVRGAVRAGDGETARQLALAGAGLA 240 Query: 243 LLPDYIVK---DNPNLVRIME-----DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + V + LVR++E DV+ F P A +++AF +F+ Sbjct: 241 RLALFQVAADLEAGRLVRVLEAFEPGDVL--EIHALFLGP-AGSVPARVRAFVDFV 293 >gi|71906775|ref|YP_284362.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71846396|gb|AAZ45892.1| transcriptional regulator, LysR family [Dechloromonas aromatica RCB] Length = 306 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 139/289 (48%), Gaps = 10/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ + GS AA +L L+ ++SR++S LE +G++L R R ++LT +G Sbjct: 4 ELAFFSLLVQQGSLVQAARELGLTGPAVSRRLSQLEQRLGVRLLARTTRRMSLTPEGELY 63 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++E + L + +P G LRI T G+ L + EF+ +P + IQL Sbjct: 64 LAESRRILGEIEALEQALNRTRAEPRGLLRIHATFGFGRRQLAPAVSEFVRQHPAVDIQL 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ + D AIR +P + + ++ R++ + + +A+P YL +PL++ EL Sbjct: 124 TLSDQPVTPGEQGFDIAIRFGEPPE-ARVVARQIASNQRYLFASPAYLARRGQPLTLDEL 182 Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 H+ I +I + F W + ++S L N + + + G GI L Sbjct: 183 VNHDCI----VIREGTGAFGTWTLCSGKQCRNIKVSGKLSSNHGEVAVDWALDGHGILLR 238 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + LVR++ + +Y YP+ L + K++ F +F+ Sbjct: 239 SLWDTATDLRAGRLVRVLPEWSGSPADIYALYPQRLNLSAKVRVFLDFL 287 >gi|16262743|ref|NP_435536.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021] gi|14523371|gb|AAK64948.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 295 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 123/272 (45%), Gaps = 11/272 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA SFT AA +L SQSS+S I LE +G++L R R + TE G +L Sbjct: 9 LLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAGEQLF 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E L E KP+G RI +L L FLL YPDI+++L+ Sbjct: 69 STLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIKVELV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ DI + D +RL ++ + R M AP L++ P + QEL Sbjct: 129 AESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPPPKTPQELT 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H I +P + W +R E R+ + N I++ + G G+ + Sbjct: 189 THRCINL--RLPSYGGFYAW--EFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLTYV 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + +V++ N LV+I++D TP F Y Y Sbjct: 245 HEDVVREYLKNGRLVQILDD-WTPPFPGYHLY 275 >gi|317401295|gb|EFV81935.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 296 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 29/304 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F VA+ +F+HAAE L++ S++SR++S LE VG++L R R + LT Sbjct: 1 MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSVGMRLLNRSTRKIDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ + + +L + +V+P G+LRI+ L Q L ++EF +P Sbjct: 61 EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVIREFREQHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 DI+ L + ID + D +R ++P SSLI RK+V + YA+P YL E Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQP--DSSLISRKIVLMAHQLYASPDYLARHGE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P +L H + M D F L + D ++ +QV+ LS + Sbjct: 179 PRVPADLTHHECLR------PTMRDESSFWMLHSGD------KVERVQVSGRLSANNVGM 226 Query: 237 L----GSGIALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 L G G+ + P + LVR++ D ++ P + K KAF Sbjct: 227 LGRLAGQGLGITPLLVFDAMERAIKQAGLVRVLPDWSLTPLPLFALLPSRML-PAKTKAF 285 Query: 287 RNFI 290 +FI Sbjct: 286 LDFI 289 >gi|167719002|ref|ZP_02402238.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei DM98] Length = 299 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR +G+ ++ L EFL YP I ++ Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W+ V R R++ VNS + + C+ G G Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRIALRARVT---VNSAEAYIACCLAGLGPIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ D + YP + + + F ++ Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|77461122|ref|YP_350629.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385125|gb|ABA76638.1| putative LysR-family transcriptional regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 303 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 12/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA+ ++ +++SR +S +E +G++LF R R + LT+ G + + Sbjct: 13 IELFCLAAECGSFTGAAQAASVTPAAVSRSVSRMEERLGVRLFARTTRSVKLTDSGRRYY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+ +L Q E+ +PSG LRI+ + + L F +P +++ + Sbjct: 73 EECSQALAQLVEAQREVMGQQQEPSGTLRISIPTTYAHHRILPLLPAFRARFPQVKVDMH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N++ID + D AIR+R I S LI R L + A+P YLK P ++++L+ Sbjct: 133 ISNRNIDFVGEGYDMAIRVRA-IPDSGLIARHLEDAALVMVASPDYLKRAGTPQTLEDLE 191 Query: 188 KHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I + +P WL T + E C + L + G+G+ Sbjct: 192 QHECIQYE--LPSNGRRITWLFYDEETPREILAEGNFCC--SDDVLGGVTLARHGAGLFQ 247 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +IV+ + +L+ +++ S YP+ +++AF +F+ Sbjct: 248 TYRFIVEKELADGSLIEVLKPYSGRSRPFTLLYPQNRHMPLRVRAFIDFL 297 >gi|320158060|ref|YP_004190438.1| transcriptional regulator [Vibrio vulnificus MO6-24/O] gi|319933372|gb|ADV88235.1| transcriptional regulator [Vibrio vulnificus MO6-24/O] Length = 305 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LT+ G L Sbjct: 11 IRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGKALF 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ + + G++RI LG+ ++ + +F+ YP +++ L Sbjct: 71 AQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYPQVRVDL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K ++ S + RKL+ + M YA+P YL P +EL Sbjct: 131 DFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRPEHPKEL 189 Query: 187 DKHNLIT 193 DKH +T Sbjct: 190 DKHACLT 196 >gi|189350105|ref|YP_001945733.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189334127|dbj|BAG43197.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 304 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 13/281 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA +G FT AAE+L+L+ S++S+ ++ LE +G+ LF R R L LT+ G + Sbjct: 15 FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRKLVLTDAGRAFYETC 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + +L + L +P G +RIA G+ + L F YPD++ L+ + Sbjct: 75 TRILAELAEAEAVLAAQQREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134 Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D++ + D A+R+ P SL +R L + AAP YL+ P ++ +L +H Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRFLGRERLIFCAAPAYLEKNGIPQTVDDLQEH 194 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245 I +G P + A D + + PRI + L+ ++ G G+A L Sbjct: 195 ACIVYGR--PDGAQSLWSYAAADGQVEQRVVRPRIVAGDAEAQLAFVRA---GLGVAQLA 249 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 ++V+D+ LV I+++ T + +P A + T K+ Sbjct: 250 TWLVRDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKI 290 >gi|83646624|ref|YP_435059.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83634667|gb|ABC30634.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 299 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 142/306 (46%), Gaps = 33/306 (10%) Query: 6 DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR V A+ +GSF AA L LS S +S ISGLET +G+ L YR R L+LT + Sbjct: 3 DELRALAVFAKTVEAGSFRAAASALSLSPSVVSHHISGLETRLGVALLYRSTRRLSLTSE 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + E + E + +P+GKL I L + ++ F L +P Sbjct: 63 GERLFDHAKTMLAAAEAGLNAIIEQAAEPTGKLTITAPAVLARGPFTADVAAFALAFP-- 120 Query: 123 QIQLILDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I L ++ DI D+ D D AIR+ + + SSL +KL + AAP YLKN P Sbjct: 121 KISLFINYSDIRQDLIRDGIDLAIRIGE-MADSSLKSKKLFDLTRRLVAAPGYLKNRPTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQ 233 +L + I K ++ L + GE PRI+ V+S ++ Q Sbjct: 180 NHPADLLQWEWIGL-----KMRPNYKLLHSAS---GERQRIDFTPRIT---VDSIDAVCQ 228 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A P ++V+D+ R+ E + + VY +P N + FI Sbjct: 229 LAAAGLGLATPPAFLVEDDLRNGRLCEPLPAWRVDTLGVYAVWP---PNAARESLTYRFI 285 Query: 291 -FLKAR 295 FL++R Sbjct: 286 QFLQSR 291 >gi|327189334|gb|EGE56502.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 297 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 16/278 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F VAR SFT AA +L +SQS++S I GLE +G++L R R ++ TE G + Sbjct: 7 DDLIAFLAVAREQSFTKAAAKLGVSQSALSHTIRGLEARLGLRLLTRTTRSVSPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E++ L KP+G +RI ++L L+ FL YPD++++ Sbjct: 67 LLVSIGPRFDEIESSLAALSAFRDKPAGTIRINAGEHAANSVLWPALERFLPEYPDVRVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+D DI + D +RL + + + R + M AP Y + +PL+ + Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMVAVRIGPDMRMAVVGAPTYFDSRPKPLTPHD 186 Query: 186 LDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 L HN L T+G + + W D R+ L N+ ++ + G+ Sbjct: 187 LTDHNCINLRLATYGGV-------YVWEFEKDGRELNVRVEGQLVFNNIALRLKAALAGA 239 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 G+A LP+ V+ +N LVR++ED P + YP Sbjct: 240 GLAYLPEDAVQAHLENGLLVRVLEDWCPPFPGYHLYYP 277 >gi|226940013|ref|YP_002795086.1| transcription regulator protein [Laribacter hongkongensis HLHK9] gi|226714939|gb|ACO74077.1| Probable transcription regulator protein [Laribacter hongkongensis HLHK9] Length = 305 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 11/274 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LRVF + +GSF+ AAE+L LS + S+ + LE ++G +LF R R ++LTE G Sbjct: 6 SLRVFQTIGETGSFSAAAERLGLSAAMASKHVHALEQQLGTRLFQRTTRRVSLTEAGQDY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + V +LE + SV G++R++ I G +L G L YP ++++L Sbjct: 66 ARRIALVLAQLEEADAAAMQQSVDIRGRVRLSAPISFGMRVLGGWLAGLAARYPQLEVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D A+R+ + ++ R L + A+P YL+ P +L Sbjct: 126 ELSDRQVDLIDEGFDLALRITTTPLADGIVARPLARFDLLLCASPAYLEQAGTPQVPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H + + L P+ + LA P+ P L N+ ++Q G GI Sbjct: 186 SQHACLRY-SLYPQGTDWRLRLADGSECRVPVSGP----LTANNGDVLVQAACTGMGIIY 240 Query: 244 LPDYIVKDN--PNLVRIMEDVI-TPSFTVYFCYP 274 P ++V+ + +R++ D + VY YP Sbjct: 241 QPRFLVETHLQQGTLRLLFDSLPVRQAEVYAVYP 274 >gi|332184959|ref|ZP_08386708.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] gi|332014683|gb|EGI56739.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] Length = 318 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 137/298 (45%), Gaps = 20/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ LR F VA SF+ AAEQL +S S++S+ I GLE +GI+L +R R ++LTE G Sbjct: 6 EFGALRAFAAVAEQRSFSRAAEQLGVSSSALSQLIRGLEERLGIRLLHRTTRSVSLTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + L + L T +E ++ K P+G +R+ + L +PDI Sbjct: 66 AALLGDIAPAIDSL-TGALEQARTTAKLPAGTVRLHCFHAAADRFVVPILPRLARAFPDI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L +D+ +DI D AIR+ + I+ + R I A AAP YL P + Sbjct: 125 TLDLTIDDTVVDIVGSGYDAAIRIGEVIERDMVALRLGEDIRQLAVAAPAYLAEHGVPQT 184 Query: 183 IQELDKHNLITF---GDLIPKCMEDF---NWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L +H I + G P E F +W + V+ P L +S ++ Sbjct: 185 PKDLLQHRCIRWRWPGQPGPYAWEFFENGHWFSVAVEGP--------LITSSRAVMVDAA 236 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA L + V D LV ++ D P Y CYP+ + L+A + I Sbjct: 237 LAGIGIAFLKEESVVDAFDRGALVALLADWSVPFPGYYLCYPQQRQMAPALRAVIDMI 294 >gi|289626322|ref|ZP_06459276.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646584|ref|ZP_06477927.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330868296|gb|EGH03005.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 11/255 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ PSG LRI + G +L L F L +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL QSS LI R + + AAP YL P Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGAPAHPG 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +L HN + F P E W T P GE + + N+ + Q Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239 Query: 238 GSGIALLPDYIVKDN 252 G G+ +LPD +V+ + Sbjct: 240 GMGVVMLPDALVQRD 254 >gi|7188597|gb|AAF37819.1|AF190471_1 CrgA [Neisseria meningitidis] Length = 299 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRGQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSAEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289 >gi|302186316|ref|ZP_07262989.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae 642] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 15/302 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + +S + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVSNHLRALEERLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ P+G LRI + G +L L EF +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAQGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL +SS LI R L + AAP YL P Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPTHPD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVLG 238 +L HN + F +++ T R G ++V N+ + Q G Sbjct: 184 DLRAHNCLAFAY---PAGDEWRTAGTQWRMTGAEGEVLVEVSGSMVANTSAGLYQAARAG 240 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GI +LPD +V+ + LV + D P + Y +++ +L R+F+ Sbjct: 241 LGIVMLPDALVQRDLQDGRLVALFPDYHLPRRPTHLLY---VQDRYRLPKLRSFVEYATG 297 Query: 296 DW 297 W Sbjct: 298 LW 299 >gi|260550354|ref|ZP_05824566.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406666|gb|EEX00147.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 299 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QN L L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QLI+ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL Sbjct: 121 EIRLQLIVSNRRVDVINEGIDVALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237 S EL H +++ + + ++ L D + + ++S + N Y+ + Q Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDSQLKKVKVSPTVMGTNLYM-LAQLASQ 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP+ +D + LV+I+ D + YP G L A R FI Sbjct: 237 NCGIALLPETAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|217978813|ref|YP_002362960.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] gi|217504189|gb|ACK51598.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] Length = 300 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 135/296 (45%), Gaps = 10/296 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + V V +GSF A E+L LS S +SR I+ LE +G++L R R L Sbjct: 1 MTFDARLLSGVGVLIAVVETGSFVRAGEKLGLSDSGVSRAIARLEARLGVRLLDRTTRAL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT+ G + H + + +L EL + G+LR+ + L L FL Sbjct: 61 RLTDDGRRFHAEATPLLLQLADAAAELGAARANVRGRLRVEVDPFFSRLALAPRLGAFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPD+ ++LI D+ D AIR +P ++ LI RKL+ + A+P Y++ Sbjct: 121 RYPDLTLELITTEAPGDLVARGFDLAIRFGEP-RAGGLIARKLLDTRILTVASPRYIERN 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 P ++L +H I + D P F W R I + L V+ +++Q Sbjct: 180 GRPAQPRDLVRHRCIQYRD--PASGRPFAWEFRKGRKIVPVEVEGPLTVSDVGTMLQAAT 237 Query: 237 LGSGIA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G G+A L + ++ LV + D +F ++ YP + + +++A +F Sbjct: 238 AGVGVAQVMALGSEALLESGALVELFPDWPDETFPLHAFYPSRHQPSLRVRALIDF 293 >gi|169795521|ref|YP_001713314.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213158538|ref|YP_002319836.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|215483008|ref|YP_002325213.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|301345527|ref|ZP_07226268.1| LysR substrate binding domain protein [Acinetobacter baumannii AB056] gi|301513178|ref|ZP_07238415.1| LysR substrate binding domain protein [Acinetobacter baumannii AB058] gi|301597159|ref|ZP_07242167.1| LysR substrate binding domain protein [Acinetobacter baumannii AB059] gi|332850715|ref|ZP_08432962.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332866984|ref|ZP_08437301.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169148448|emb|CAM86314.1| putative HTH-type transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|213057698|gb|ACJ42600.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213986362|gb|ACJ56661.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|332730552|gb|EGJ61868.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332734313|gb|EGJ65441.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 300 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 13/222 (5%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L VF +VA S + AA L + S ISR I+ LE ++GI+ F R R L Sbjct: 1 MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++++ G L L++FLL Sbjct: 61 SLTEAGQLYYERMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + +S+LI R L + A+P YLK Sbjct: 121 KYPDIQIEINISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLAT 210 P +++EL H I F G + P + E+ W+ T Sbjct: 180 GIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPT 221 >gi|84500441|ref|ZP_00998690.1| transcriptional regulator, LysR family protein [Oceanicola batsensis HTCC2597] gi|84391394|gb|EAQ03726.1| transcriptional regulator, LysR family protein [Oceanicola batsensis HTCC2597] Length = 307 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 16/275 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 SFDW++ R F A GS + AA +L +Q ++ RQ++ LE ++G+ LF R RGL LTE Sbjct: 7 SFDWNQARAFLATAELGSLSAAARELGQTQPTLGRQVAALEDQLGVALFDRAGRGLILTE 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L E+ + S G + I + LL + E + P+ Sbjct: 67 AGRELLSHVREMAEAAARVPLTASGQSQALRGTVGITASDVFSVTLLPPIIAELSRIAPE 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+I+++ N D+S AD AIR +P + +L R L H YAAP YL P Sbjct: 127 IEIEVVASNDLRDLSRREADIAIRHVRPTE-PALTARLLGEGTGHLYAAPAYLDRRGRPA 185 Query: 182 SIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 S +L H+ + F D+ + + + +F P+ I + ++ L++ + G Sbjct: 186 SRSDLATHDFVGFLDVNRMGRTLGEFGI------PVAARNIRY-RTDNGLAMWEMVRAGL 238 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274 GI ++ + P++ +++ P V F YP Sbjct: 239 GIGVMTADLGLTTPDV-----ELLFPR-EVAFRYP 267 >gi|45440817|ref|NP_992356.1| transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51595551|ref|YP_069742.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108807083|ref|YP_650999.1| LysR family transcriptional regulator [Yersinia pestis Antiqua] gi|108812982|ref|YP_648749.1| LysR family transcriptional regulator [Yersinia pestis Nepal516] gi|153950777|ref|YP_001401781.1| LysR family substrate binding transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|166211613|ref|ZP_02237648.1| substrate-binding transcriptional regulator, LysR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167400255|ref|ZP_02305768.1| substrate-binding transcriptional regulator, LysR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424115|ref|ZP_02315868.1| substrate-binding transcriptional regulator, LysR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025127|ref|YP_001721632.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186894607|ref|YP_001871719.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|229894059|ref|ZP_04509245.1| Transcriptional regulator [Yersinia pestis Pestoides A] gi|229903420|ref|ZP_04518533.1| Transcriptional regulator [Yersinia pestis Nepal516] gi|294503179|ref|YP_003567241.1| Transcriptional regulator [Yersinia pestis Z176003] gi|16611834|gb|AAL27377.1|AF426171_8 putative transcriptional regulator [Yersinia pestis] gi|45435675|gb|AAS61233.1| Transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51588833|emb|CAH20447.1| putative transcriptional regulator, LysR family [Yersinia pseudotuberculosis IP 32953] gi|108776630|gb|ABG19149.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516] gi|108778996|gb|ABG13054.1| putative transcriptional regulator, LysR family [Yersinia pestis Antiqua] gi|152962272|gb|ABS49733.1| substrate-binding transcriptional regulator, LysR family [Yersinia pseudotuberculosis IP 31758] gi|166207384|gb|EDR51864.1| substrate-binding transcriptional regulator, LysR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167050204|gb|EDR61612.1| substrate-binding transcriptional regulator, LysR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056964|gb|EDR66727.1| substrate-binding transcriptional regulator, LysR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751661|gb|ACA69179.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis YPIII] gi|186697633|gb|ACC88262.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis PB1/+] gi|229679190|gb|EEO75293.1| Transcriptional regulator [Yersinia pestis Nepal516] gi|229703944|gb|EEO90957.1| Transcriptional regulator [Yersinia pestis Pestoides A] gi|262361216|gb|ACY57937.1| Transcriptional regulator [Yersinia pestis D106004] gi|294353638|gb|ADE63979.1| Transcriptional regulator [Yersinia pestis Z176003] gi|320014316|gb|ADV97887.1| Transcriptional regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 96/183 (52%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A+ GSFT AAE+L L++S++ + +S LE +G+KLF R R L+LT G + Sbjct: 12 AFVTTAQQGSFTAAAEKLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGERFLAS 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + EL +PSG+LR+ G+ + L + + LYP++ + + Sbjct: 72 CQSAIDILEQAEAELMSHICQPSGRLRVDLPAAFGRQRILPILLDIIRLYPELALTVTFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D IR+ + SS L+ R+L T + A+P YL EP+S EL +H Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLYHGEPVSTDELSQH 191 Query: 190 NLI 192 + Sbjct: 192 QCV 194 >gi|241662641|ref|YP_002981001.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240864668|gb|ACS62329.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 303 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 143/294 (48%), Gaps = 15/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++LR+F VA FT AA+QL + + ++S I LE +G +LF R R ++LT+ G Sbjct: 4 FEQLRIFIRVAHCAGFTPAADQLGVPRPTVSLAIQQLEARLGTRLFNRTTRRVSLTQDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + E + + + + G+LR+ + + + L F +P I++ Sbjct: 64 VLLERAIALVADSEELEQQFRPRAQALQGRLRVDLPSRIARRQIAPALPTFFAQHPGIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L ++ ID+ D DCA+R+ + + S++L R L ++ + A+P YL + P Sbjct: 124 ELGSSDRSIDLVRDGIDCALRIGE-LSSTNLGARSLGSLKLINCASPTYLSSNGVPQCPA 182 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H + + G +P L TV + R+S +Y++ YC+ G Sbjct: 183 DLPQHLAVNYVSSTSGRAVPWEWTADGHLQTV---MMRARVSANNAETYIA---YCLAGM 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +P + V+++ +LV ++ D PS V YP + +++ F N++ Sbjct: 237 GLIQIPAFDVREHLEVGDLVEVLLDWPAPSMPVQIVYPHRRHLSRRVQIFSNWL 290 >gi|241664937|ref|YP_002983297.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|309780257|ref|ZP_07675008.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|240866964|gb|ACS64625.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] gi|308920960|gb|EFP66606.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 312 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 137/296 (46%), Gaps = 7/296 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V GSF AA+ L +S + ++R ++ LE +G +L R R L+LT+ G Sbjct: 6 SMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ ++ + S G LRI + G ++L L F LYP++ + Sbjct: 66 LQRCAQILLDIDEAESLATSRSQALVGGLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ IDI D D I + + S L+ R++++ M A P YL+ P +++ Sbjct: 126 ALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDI 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLP 245 +H +I P+ ++ + I P L V S +M VL GIA+L Sbjct: 186 AEHRVIAMWH--PQLRHEWEMSTPDGQSISVPVQPSL-VTSNAELMHRAVLADMGIAILS 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 Y+ + ++ LVR++ P ++ YP K++ F +++ +A + K Sbjct: 243 SYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298 >gi|194366305|ref|YP_002028915.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349109|gb|ACF52232.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 330 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 3 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R + + L Q L L +FL YP ++ Sbjct: 63 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRASVPVSLAQMQLPKLLPKFLEQYPKVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +DI + D A+R+R + SL+ R + A+P YL P Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL +H ++ D + E V R +PR++ S+++ G GI Sbjct: 183 PEELTQHVTLSISEDEARQRWELHGPEGEVRRVDLQPRVAGFDFPLLQSMVKD---GFGI 239 Query: 242 ALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 +LP+ + D VR E +V+ P +++ C+ G L A R FI Sbjct: 240 TMLPETVCADA---VRNGELEVVLPDWSLPQGVCHAVFASRRGLLPAVRVFI 288 >gi|288959242|ref|YP_003449583.1| transcriptional regulator [Azospirillum sp. B510] gi|288911550|dbj|BAI73039.1| transcriptional regulator [Azospirillum sp. B510] Length = 314 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 116/256 (45%), Gaps = 21/256 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LRVF +AR+GS + AA L LS +++ R+++ LE +G L R G LT + Sbjct: 29 LDWDDLRVFLELARTGSLSAAARGLRLSHATVGRRLAALEATLGRGLMERRPDGYVLTGE 88 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + R +E + + +G +R+ T L L L P + Sbjct: 89 GESV-RALAEAMDERAQAIRRREGGDTGLTGTVRLTMTQALADLFLIPRLGPLRAANPAL 147 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++I+DN+ + ++ AD AIRL +P Q L+ R+L T+ YAAP Sbjct: 148 DLEIIVDNRTLSLARREADLAIRLAQP-QRGDLVGRRLATLGYGLYAAPGA--------- 197 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 LI + D + + E WL DR G R++ + NS + V G G A Sbjct: 198 -----PDTLIAYDDSMAELPEAL-WL---DRHGGGRRVA-FRCNSVQGQLAAAVAGFGTA 247 Query: 243 LLPDYIVKDNPNLVRI 258 LLP + P L R+ Sbjct: 248 LLPCMLADGVPGLERL 263 >gi|260553721|ref|ZP_05825992.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260405121|gb|EEW98620.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 295 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 147/291 (50%), Gaps = 34/291 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L+ F V ++ +FT AA + ++QS++S+ I+ LE ++GIKL R R LTLT Sbjct: 1 MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQE-SSVK--PSGKLRIATTIDLGQNLLQGNLKEFLL 117 E GS+L + V +E + +++ SS+K PSG +RI+ + L LK+ + Sbjct: 61 EAGSRLIEL---VGQNIENIDLGIEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVK 117 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAP 171 YPDI ++L +N+ IDI+ + D +R+ +L+++ L+ + + A+P Sbjct: 118 QYPDISLELTSENRRIDIAKEGYDAGVRV------GNLVEKDLIAVPISKEIPFRLVASP 171 Query: 172 HYLKNCREPLSIQELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226 YL+ P S+ +L KH L+T L+ +D N P+ L + Sbjct: 172 EYLEKYGTPQSVDDLKKHKGIYIRLLTDNSLMAWEFKDKNKSVFFRGPVQ------LVMT 225 Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFC 272 S ++ + G +A LP ++VK + LV +++ V P F +++ Sbjct: 226 SLDEMLDAVLDGCAVAYLPYFLVKPALEEKKLVSLLDQHAVTLPPFYLFYT 276 >gi|326797095|ref|YP_004314915.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547859|gb|ADZ93079.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 294 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F SGS + AAEQL+++ + + + I+ LE+ +G +L R R LT+ G Sbjct: 4 FQSMKAFVTTVHSGSMSAAAEQLNITSAMVGQHIASLESRLGTRLLNRTTRRQNLTDFGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ ++E + S + G LRI + G ++L L + L P +++ Sbjct: 64 SYLEQCLDILERVAVAEMEAEAQSSEARGTLRITAPVTFGSSVLMPVLVRYRRLSPRVKV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L ++++D+ + D A R+ + + S LIQRKL+ M A+P YL+N P + Sbjct: 124 DVVLTDQNLDLIEERVDLAFRIGE-VPDSRLIQRKLMPYKMVLCASPDYLRNQGVPEQPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIAL 243 +L H L+ F ++ F + + E SC+ +NS +++ + G GI + Sbjct: 183 DLAHHELVRFAVSSGAPLKLFK-----NDEMREVSPSCMVTMNSGQALVNAALRGLGIIV 237 Query: 244 LPDYIVKDN 252 P+ +VKD+ Sbjct: 238 QPEVLVKDH 246 >gi|289673125|ref|ZP_06494015.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae FF5] Length = 298 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 136/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S I + I LE +G++LF+R R + LT +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LE ++EL + P G+LRI ++ L L+ + +F+ YPDI++ + Sbjct: 69 CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ +++ + + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHAIPRHPGDLSQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P +W + R G + Q N+ ++ G GIA LPD Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ N L+ +++D + T +P + + +L+ F +F+ Sbjct: 242 FMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288 >gi|88858347|ref|ZP_01132989.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819964|gb|EAR29777.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 304 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 143/292 (48%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L++F V SG+FT AA L+ +S++S I LE ++G LF+R R ++ T+ G + Sbjct: 5 EQLKIFIQVVDSGNFTKAALVLNKPRSTVSTVIQELENKLGTSLFHRTTRSMSPTDDGLQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + + VK G++R+ + + ++ L +FL+ YPD++I+ Sbjct: 65 YFELARSLVDQFDAAETLFLNNPVKVKGRIRVDIPSRIARRIVIPALPDFLIQYPDLEIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +K D+ D DC +R+ P+ S LI +KL + + A+P+YL P+ + + Sbjct: 125 FGASDKYTDLVSDGVDCVLRV-GPLTDSELICKKLGDLSLCNCASPNYLVLNGTPIELAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241 L KH ++ + + W VD GE R S + V + + + + G GI Sbjct: 184 LQKHKVVNYCSSV--AASSAGWEYCVD---GEIRKIIMGSNIAVYNAEAYIAAALAGLGI 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P + V D + L+ +M D + YP T ++K F++++ Sbjct: 239 IQVPRFDVVDLIESGALIEVMSDYRPLPLQLSLLYPSRKNLTPRVKIFQDWL 290 >gi|254255380|ref|ZP_04948696.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124901117|gb|EAY71867.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 16/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA++G F+ AA +L L+ SS+ R + LE +G L R R +TL++ G+ Sbjct: 4 FSALRAFVEVAQAGGFSSAARRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V +L + + +PSG LR++ + G + ++ F+ YP + I Sbjct: 64 VYYARAKRVLEELADADALVADRGDEPSGPLRVSVPVAYGVRRIAPHIGAFVARYPKLDI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ D AIRL ++ ++ R L T + A+ YL P + Sbjct: 124 DLQLTDERVDLVASRIDVAIRLGDAAPTADVVARPLGTFSRYVVASRRYLDARGTPATPG 183 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H + F GD D + V + P L+ N + + + G+GI Sbjct: 184 DLADHACLRFHFGGDQQAWTFADAHGQTQV--IVAGP----LKSNHSEVLREAALDGAGI 237 Query: 242 ALLPDYIVKDN---PNLVRIME--DVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290 ALLPD+++ + L R+ E DV T V Y + + ++ AF +F+ Sbjct: 238 ALLPDWLIGGDVEAGRLHRLFERYDVTPGTARAVVTALYLPTQRGSKRVTAFVDFV 293 >gi|332533283|ref|ZP_08409150.1| transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis ANT/505] gi|332037362|gb|EGI73817.1| transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis ANT/505] Length = 299 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++V + VAR G+ T AAE+L++ S++ R+I+ LE + +LF+RHARG +TE G Sbjct: 7 DWQDVKVAFEVARLGTLTAAAEELNVHHSTVLRRINNLEKNLNARLFHRHARGYKVTEIG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +KL ++ LE ++ + G L + TT+ ++L ++F L+P +Q Sbjct: 67 TKLFATAQTIHSSLEQLHNDIVAADSTLRGSL-LLTTVSGFMDILGDVCEQFQALHPQVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++IL+ K + + A A+R I + L + YA Y+ P + Sbjct: 126 LEVILEQKRLRLDHGQAHIAVRAGPRPDEGDYIAQHLAQLSSGLYANKRYINKYGMPKLL 185 Query: 184 QELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +HN ++ F +P + A D I +I L+V+ + + G Sbjct: 186 SDLQQHNFVSGVAGFNARVP-------YFAWADEHIPASQIK-LRVSETAEATRAIIKGL 237 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + +LV I+ + + ++ + T K++AF + Sbjct: 238 GIGGLQHDVAAQYADLVPILHNELHWPTDIWLVTHHLVHRTAKVQAFAELL 288 >gi|325275341|ref|ZP_08141292.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099532|gb|EGB97427.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 295 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 10/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W+ LR F + RSG AA++L+ + S+++R I +E +G LF +HA+G LT Sbjct: 2 FNWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIERIEESLGTALFVQHAQGYELTPS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + ++ P GK+R+ T +G + YP + Sbjct: 62 GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + LI RKL + YA+ YL + Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQGYLDRAPPLRN 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H+ I + D + E L ++ P + + S ++ G GIA Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQVAARAGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +LP+Y+ + +P LVR++ + I S+ + C L + +L+ +++ Sbjct: 235 VLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282 >gi|289624442|ref|ZP_06457396.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866141|gb|EGH00850.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H+ + +G W V G+P I ++ N+ + V G G Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP +IV + +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQDRQASRPVQAFIEFL 287 >gi|71736300|ref|YP_274688.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556853|gb|AAZ36064.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320328403|gb|EFW84406.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 11/255 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ PSG LRI + G +L L F L +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL QSS LI R + + AAP YL P + Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARLMQDYTLTICAAPSYLARHGTPAHPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +L HN + F P E W T P GE + + N+ + Q Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239 Query: 238 GSGIALLPDYIVKDN 252 G G+ +LPD +V+ + Sbjct: 240 GMGVVMLPDALVQRD 254 >gi|37675914|ref|NP_936310.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200454|dbj|BAC96280.1| transcriptional regulator [Vibrio vulnificus YJ016] Length = 305 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LT+ G L Sbjct: 11 IRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGKALF 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ + + G++RI LG+ ++ + +F+ YP +++ L Sbjct: 71 AQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYPQVRVDL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K ++ S + RKL+ + M YA+P YL P +EL Sbjct: 131 DFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRPEHPKEL 189 Query: 187 DKHNLIT 193 DKH +T Sbjct: 190 DKHACLT 196 >gi|239993069|ref|ZP_04713593.1| transcriptional regulator, LysR family protein [Alteromonas macleodii ATCC 27126] Length = 303 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 9/291 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V GSF AA +L S+S +S Q++GLE + ++L R R L LT++G+ + Sbjct: 12 LAIFASVVECGSFAEAARRLGTSRSRVSEQVAGLEASLDVRLLQRTTRQLMLTDEGNAVF 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L +L++ + P G++ I T D+ L L EF YP+I + ++ Sbjct: 72 SHAKKCHEILHGIDEDLRQPA--PKGRVSITVTNDIAHKFLLPLLPEFKRRYPEIDLHIV 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ D +R+ P + SL+ R L YA+P YLK EP +I EL+ Sbjct: 130 SSDDKLDLIAQNIDVGLRIGLP-RDDSLVGRVLYQEQFALYASPDYLKKYGEPKTIAELN 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LLPD 246 H I L + M ++L + PI NS + + G GI+ LLP Sbjct: 189 NHTWILLSQLNSRIM---HYLMLDNTPIDITPKHYELCNSPHLVQEMVKAGLGISTLLPS 245 Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + K+ + LVRI + + + YP + +A +++ R Sbjct: 246 TVQKEVASNELVRIFPSLGSETLLFTLVYPSRKHVPSRTRALIDYLVETCR 296 >gi|188990880|ref|YP_001902890.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris str. B100] gi|167732640|emb|CAP50834.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris] Length = 304 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF VAR GSFT AA QL +SQS++S + LET +GI+L R R +++TE G + Sbjct: 12 NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMR 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L KP+G +RI T L L + L YPD++++ Sbjct: 72 LFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVE 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D DI + D IRL + + M AAP Y + P E Sbjct: 132 ITVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPRQRMAVIAAPSYFVHHTIPAVPAE 191 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN I T G L+P E V R G+ N ++++ + G+G Sbjct: 192 LAQHNCIGLRLPTHGGLLPWDFEKDGREQKV-RVDGQ-----WTFNGSSAMLRAALAGAG 245 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +A LP+ +V D+ L R+++D P Y YP +++ LK Sbjct: 246 LAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALK 292 >gi|325143752|gb|EGC66069.1| putative lysR-family transcriptional regulator [Neisseria meningitidis M01-240013] Length = 299 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 7/253 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + I + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAIPMVLHLLAPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN 252 GIA L D++V ++ Sbjct: 235 GIACLSDFLVDND 247 >gi|298487066|ref|ZP_07005117.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158419|gb|EFH99488.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 11/255 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ PSG LRI + G +L L F L +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL QSS LI R + + AAP YL P Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGAPAHPG 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 +L HN + F P E W T P GE + + N+ + Q Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239 Query: 238 GSGIALLPDYIVKDN 252 G G+ +LPD +V+ + Sbjct: 240 GMGVVMLPDALVQRD 254 >gi|312796028|ref|YP_004028950.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica HKI 454] gi|312167803|emb|CBW74806.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica HKI 454] Length = 329 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 138/298 (46%), Gaps = 23/298 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ A L +S+S +SR++S LE +G++L R R L LTE G Sbjct: 7 DLNDLLYFSQVVEYGGFSAAERALGISKSRLSRRLSDLEAALGVRLLQRSTRKLALTEAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + HR + + + + P G +R++ + + Q +L + EFL YPD++ Sbjct: 67 ALFHRHCVAMLGEARAALDAVHQLGSTPRGTVRVSVPMTVSQTMLAHWMPEFLRRYPDVK 126 Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + N+ ID+ D D A+R+R +P +++++ R L +P L P+ Sbjct: 127 VVVHVTNRVIDLFEDEIDVALRVRSEPHANANIVVRPLWRREQMLVGSPSLLDANHPPMV 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235 +L ++ ++ +P D ++ + P G EPR+ + L I Q Sbjct: 187 PADLARYATLS----VPSA--DGRYVFKLIAPDGSHHDYEHEPRLVTADL---LMIHQAV 237 Query: 236 VLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA+LPD I + N L +M P +Y + L G L A R FI Sbjct: 238 LAGVGIAVLPDNIYQAAMNAGQLSPVMPGWTLPPPQLYAVF---LSRQGLLPAVRAFI 292 >gi|331659194|ref|ZP_08360136.1| transcriptional regulator, LysR family [Escherichia coli TA206] gi|331053776|gb|EGI25805.1| transcriptional regulator, LysR family [Escherichia coli TA206] Length = 318 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 29/305 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F + SF+ AA+ L + S+ SR IS LE + I LF R RGLTLTE G + Sbjct: 14 IRTFISTVKCRSFSSAAKLLKIEASTASRHISELEEYLNITLFIRSTRGLTLTESGQYFY 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + E + PSG +R++ G+ + +KEFL LYPDI + ++ Sbjct: 74 QHARQLLLQWEEICLLTSNRDKGPSGLIRMSVPATFGRLHIMPFIKEFLSLYPDISLDIM 133 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D++ D +IR + SS+ RKL + A+A P ++KN +S E Sbjct: 134 FSDEIQDLTETGIDLSIRT-GILTDSSIHARKLASQTRRAWATPEWIKNNGPLISPDEYT 192 Query: 188 KHNLITFGDLIPKCME--DFNWLATVD---RPIGE-------PRISCLQVNSYLSIMQYC 235 ++ P ME +F+ L + R G P L V+ +++ C Sbjct: 193 EY---------PAVMEIINFSRLQSAGWYIRKTGSGDDWHRIPVSYRLSVSDSDALLYAC 243 Query: 236 VLGSGIALLPDYIVKDNP---NLVRIM---EDVITPS-FTVYFCYPEALKNTGKLKAFRN 288 +GIA+LPD++ + N++RI E ++P ++ YP+ +++AF + Sbjct: 244 CHHAGIAILPDWLSCEEARKGNIIRIFPEWEFSMSPGENAIWILYPQKRAMPYRIRAFID 303 Query: 289 FIFLK 293 FI K Sbjct: 304 FIIKK 308 >gi|299770963|ref|YP_003732989.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] gi|298701051|gb|ADI91616.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] Length = 306 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 139/285 (48%), Gaps = 10/285 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ + GS A +L+L+ ++SR+++ LE +G++L R R ++LT +G Sbjct: 6 ELAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLTSEGEVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + + S P G LR+ + G++ + + F +YPD+ +QL Sbjct: 66 FENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYPDVDVQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ + D +IR + I S LI +KL A+P YLK +PL+ +L Sbjct: 126 HLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKMAGQPLTPHDL 184 Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 +H I +I + + NW + + + ++ L N + + + G GI + Sbjct: 185 TQHQCI----VIRQNDSAYGNWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGYGILMR 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ V + LV+++ED TP VY Y E L + K+ F Sbjct: 241 AEWDVAKYLRSGRLVQVLEDYETPPADVYAVYLERLNLSPKVAHF 285 >gi|271498906|ref|YP_003331931.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270342461|gb|ACZ75226.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 298 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 5/260 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++++ F VV GS T AA QL + S ISR +S LE ++G+ L +R R L L+ Sbjct: 1 MKVTLEEMQAFVVVVDCGSVTAAAGQLGQTTSGISRALSRLENKLGMTLMHRTTRRLALS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + + +E + ++ KP G+LRI Q+++ + EF L YP Sbjct: 61 EEGQIFLQHARDALYAVELAEEQIALRRSKPCGRLRINAAASFMQHVIVPIIPEFRLRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D+ ID+ + D AIR+ + ++ SS+ R L + A+P YL P Sbjct: 121 CISLELNSDDVIIDLLEQHTDIAIRIGE-LRDSSIHARPLGATRLRLLASPAYLNRHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LS+ L H L+ F + D PI P I+ ++ + Q + G G Sbjct: 180 LSVDALAGHTLLGFTQSESLNLWPLRSAFGDDYPI-SPTIAA---SNGEVLRQLALSGEG 235 Query: 241 IALLPDYIVKDNPNLVRIME 260 I L D++ +D+ R+++ Sbjct: 236 IVRLSDFMTRDDVAAGRLVQ 255 >gi|241758927|ref|ZP_04757039.1| LysR-family transcriptional regulator [Neisseria flavescens SK114] gi|241320748|gb|EER56981.1| LysR-family transcriptional regulator [Neisseria flavescens SK114] Length = 296 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SGSFT AA+QL +S + S+ +S LE + KL +R++R L LTE G + + Sbjct: 7 LKVFRQVVQSGSFTRAADQLDISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+T + + P G LR+ + + L E+ YP + + L+ Sbjct: 67 RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ ID+ + D A+R+ K S SLI + L I AAP YL P + + + Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H I + ++ AT ++ I ++ ++ L I + G+GI P + Sbjct: 186 QHQAI-LPSYTNQQDQEITHRATAEKAILHLS-PVIRSDNTLMIRELIKAGAGIGYQPLW 243 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ + L++++ D + + Y + + K+++F +F+ Sbjct: 244 AVQQELKDGTLIQLLPDYTIWADQLNATYVDRAFLSAKVRSFIDFL 289 >gi|190574798|ref|YP_001972643.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012720|emb|CAQ46349.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 312 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 18/289 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F + +GS + AA QL +Q ++SR++ LE ++G++L R GL LTE G + Sbjct: 15 DLLRTFLRIVDAGSLSAAAVQLGTTQPTVSRRLQALERQLGLRLLQRSTHGLQLTEDGLR 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R V + E+ Q EL G+LR+ GQ L + FL +P + ++ Sbjct: 75 CQRHAQRVVDEWESLQAELHGEPETLRGRLRVMVPHAFGQAQLLPTMLAFLAQHPQLSLE 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--REPLSI 183 IL+++ D + DCA+R+ P+ ++ L + AAP ++ P Sbjct: 135 WILEDRRPDFIAEGIDCAVRV-GPVDEPRMVALPLAEVPRIVVAAPSLVQATAISTPEQA 193 Query: 184 QELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Q L +L+T+ L+ + L+ R L ++ + Q G G Sbjct: 194 QALPWISLVTYYRERLLLHDAQGRAHTLSISPR---------LLSDNLFVVQQAARAGLG 244 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A++ ++V D+ LV+++ D P+ V+ +P A + +L+AF Sbjct: 245 AAVVSAWLVADDLAQGRLVQLLPDWQAPALPVHVVFPAARQQPPRLRAF 293 >gi|300689815|ref|YP_003750810.1| transcriptional regulator, lysR family [Ralstonia solanacearum PSI07] gi|299076875|emb|CBJ49488.1| transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 298 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 132/289 (45%), Gaps = 24/289 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q + R + LE +G LF R +GL+ TE Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFVRTQQGLSPTEAAL 67 Query: 65 KLHRVTSEVYHKLETTQIEL------QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 L R +E LE+T L Q V+ G +RI + + +L L + Sbjct: 68 AL-RPYAE---SLESTSAALLRAASSQREGVR--GTVRITASEVVTVEVLPAILADLHAA 121 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YPD+ I+L+ N+ ++ AD A+R+++P Q LI R L I + +A YLK C Sbjct: 122 YPDLIIELVPSNRLENLLRRDADIAVRMQRPSQ-GVLIARHLGGIELGVHAHRRYLKRCG 180 Query: 179 EPLSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P ++ +L H LI + I W+ DR L+ +S L+ + Sbjct: 181 TPATLDDLAGHALIGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAAL 232 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G GI + + + +P+LVR+ D + P + E L+++ + + Sbjct: 233 RAGFGIGICQVGLARHDPDLVRLFADDVAPVLDTWLAMHEDLRDSPRCR 281 >gi|167588496|ref|ZP_02380884.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 313 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 19/297 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + L +F +GS + AA L L +S++S++++ LE +G +L +R +R LT Sbjct: 1 MNLNDLYLFVQAVEAGSMSAAARLLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLTPV 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + E+ + + + +P G +RI +++ + Q+ L L F +P + Sbjct: 61 GADFFQHARAAVIEAESARDAVLRQAAEPRGVVRITSSVPVAQHFLAPCLPAFAAAHPKL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 Q+Q+ ++ +D++ + D A+R P+ S+L+QR L + A+P YL C EP Sbjct: 121 QLQIHASDRLVDLAQEGFDIAVRSHFAPLPDSALVQRPLAVSPIILVASPAYLARCGEPA 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCV 236 L +H+ + G ++ W G+ PR L + ++Q V Sbjct: 181 EPAGLAQHDGLYPG------LQSTPWRVGRGVDSGDSVEIAPRPR-LHADESTVLLQAAV 233 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA LPD+I D LVR++ T P G+L R + Sbjct: 234 AGLGIACLPDWIAHDALQTGALVRVLPAWHAGQVTTTLLMPH---RRGQLPGVRAAV 287 >gi|302185701|ref|ZP_07262374.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae 642] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 13/306 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+FD + + +F V RSGSF AA L + +++SR++ LE ++ +L R R L LT Sbjct: 1 MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60 Query: 61 EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + G + R V +E + +L +P G +RIA D + FL LY Sbjct: 61 QAGEDFYGRCVGAVDGVMEAAE-QLASGRDEPGGLVRIAAMADFFDFFSMDWVAGFLALY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178 P +Q++ +L + D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAYG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 P S+Q L H ++ W L D + E I+ N+ ++ + + Sbjct: 179 MPDSLQSLYSHYCVSAAHRGGVT----AWRLLGPDAKMHEVHIASRFNANTAQALRKATL 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GIALLP +++ + LV ++ S ++ YP + AF + K Sbjct: 235 AGLGIALLPATLIRSDLQDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294 Query: 294 ARDWKF 299 RD F Sbjct: 295 LRDKAF 300 >gi|116050380|ref|YP_790803.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585601|gb|ABJ11616.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 304 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 141/297 (47%), Gaps = 20/297 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS +D + F VA S T AAE++ LS+S IS+++S LE +G++L YR R + T Sbjct: 1 MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLERRLGVRLLYRTTRNVEPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E G ++ +L + L+E+ + G+LRI T + G L + +F+ Sbjct: 61 EAGHFFYKAAKASLQELNNAAEIVALRENDL--CGELRIVTPMSFGTLWLSPIIADFMSQ 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P ++I L +D++ D + D +IR+ + + SSLI R L +P Y + Sbjct: 119 HPRLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAERHG 177 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQY 234 ++++L +H + + + P + W P +PR N+ ++ Sbjct: 178 TLDTLEQLMQHECLGYNNATPSQV----WTFEPAFPGAKPRAVSPRGRFSSNNGQAMRDA 233 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAF 286 + G G+ALLP +IV ++ R+++ PS +Y Y A + K+KAF Sbjct: 234 ALRGQGLALLPLFIVAEDLKNGRLVD--AAPSLRPLDDVIYAMYSRAAAMSPKVKAF 288 >gi|326318947|ref|YP_004236619.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375783|gb|ADX48052.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 321 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L ++ V GSF+ AA L L +S +SR+++ LE +G++L R R +++TE G Sbjct: 3 DLNDLGLYAAVVTHGSFSAAARALGLPKSKLSRRVAELEQRLGVRLLQRSTRAVSVTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + V + + ++ +PSG++R+++ + + L L FL +P +Q Sbjct: 63 AAFFKHCEAVTQAAQAAFDVAERATDRPSGRIRVSSPVGVAHMFLAPLLPAFLKQHPGVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L N+ +D+ + D A+R+R + S L+ R L AAP L P ++ Sbjct: 123 VDLDLTNRRVDLIAEGYDVALRIRSALDDSELVVRMLGASPQVLVAAPALLAEHARPSTL 182 Query: 184 QELDKHNLI---TFGDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +L + G P+ +W RP+ V+ + ++ L Sbjct: 183 AQLAGAPGLGPRGTGGAAPRWRIQPPGGDWAEVEYRPV--------LVSDDIHLLHTAAL 234 Query: 238 -GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSGIA LP ++ D L ++ D P+ ++ YP G + A R FI Sbjct: 235 AGSGIAQLPAHVCADGIAQGRLQHLLADHTLPTHQLHAVYP---SRKGVVPAVRAFI 288 >gi|260460642|ref|ZP_05808893.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259033747|gb|EEW35007.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 292 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 134/286 (46%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF+ AA L + Q ++S+ I+ LE +G++L R RGL+ T+ G + Sbjct: 7 MNTFIRVIETGSFSAAARHLRVGQPAVSKAIAQLEERLGVRLLSRTTRGLSPTDAGLSFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ++ +G LRI T++ G+ + LK FL +P + +++ Sbjct: 67 EGAKRAVDEADEAENAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEVA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D++++D+ + D +RL + + I RK+ T AAP YL EP++ EL Sbjct: 127 MDDRNVDLVEEGVDVMLRLGESFAPAH-IGRKIATCRRLVVAAPSYLAREGEPIAPDELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H I F F A G+ R L+V S I + + G G + ++ Sbjct: 186 RHEAILFVRAGTSNRWTFRRGAEEISLAGQGR---LRVTSAEGIREAVLAGIGFTVGSEW 242 Query: 248 I--VKDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + VR I+ D P ++ +P K + + + F +F+ Sbjct: 243 MFDAELRSGAVRPILVDWALPPVELWALFPAGRKASVRARTFVDFL 288 >gi|221196325|ref|ZP_03569372.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221202999|ref|ZP_03576018.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221176933|gb|EEE09361.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221182879|gb|EEE15279.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 318 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 4/202 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA SG+FT AA L L+ +++S I LE E+ +KLF R RG++LTE G + Sbjct: 26 LHVFMSVATSGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYL 85 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN-LLQGNLKEFLLLYPDIQIQL 126 + T Y ++ + EL + +PSG LR+ T + L + ++ L F YP +++++ Sbjct: 86 QRTEAAYRQIAQARDELNAAHDEPSGLLRV-TALPLARTQVIAPMLATFHRRYPKVRLEI 144 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +N +DI D D IRL +Q + R + A+P YL P S+ L Sbjct: 145 RYENALVDIVNDGFDAGIRLADRLQPGMIGVRIAPALSCALVASPDYLARRGAPASVAAL 204 Query: 187 DKHNLITFGDLIPKCMEDFNWL 208 D H I F P+ WL Sbjct: 205 DAHACIRF--RFPESGRLHKWL 224 >gi|269961730|ref|ZP_06176090.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833513|gb|EEZ87612.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + + H ++ I + + + G +R+ +G++++ + EF+L YP+I + L Sbjct: 70 QECEKALHDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYPNITVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D AIR+ + ++ + + RKL+ I M A+P YLK EP++ +EL Sbjct: 130 DFSSPRIDLIEDQFDVAIRMGE-LEDAGFVARKLMMIDMVTLASPRYLKTYGEPVTPKEL 188 Query: 187 DKHNLIT 193 KH +T Sbjct: 189 AKHRTLT 195 >gi|153005754|ref|YP_001380079.1| LysR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029327|gb|ABS27095.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. Fw109-5] Length = 313 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 139/291 (47%), Gaps = 16/291 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW LR F + RSGS + AA++L + +++++R+++ LE E+G+ LF R +G T T Sbjct: 22 LDWGNLRFFLELTRSGSLSRAAQRLSVDRNTVARRVAALEEELGLALFERGPQGWTRTPA 81 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + S + + + +G +R+ T + L +LL L +P + Sbjct: 82 GDELASLASRIEEDVLALARHVDARDPAVAGAVRLTTAMHLSAHLLVPALPALRERHPAL 141 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA---PHYLKNCRE 179 +++ D + D+ AD A+R+ +P + + L+ RKL + YAA P + + Sbjct: 142 VLEIAADQRTFDLGRREADLALRMGRP-RDAGLVTRKLSDVAYGLYAARGSPAGRRGAVD 200 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 LS I D + ++ WLA R E R+ + NS S+ L Sbjct: 201 FLS------DPFIGLDDSLASAPQE-RWLA---RTAPERRV-VFRSNSTASLHAAARLEV 249 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A+LP ++ + +P LVR ++ P ++ L+ T +++A ++ Sbjct: 250 GVAVLPCFVAEADPGLVR-LDAPEPPHHELWLLVHGDLRRTPRVRAVIEWV 299 >gi|88801131|ref|ZP_01116676.1| probable transcriptional regulator, LysR family protein [Reinekea sp. MED297] gi|88776112|gb|EAR07342.1| probable transcriptional regulator, LysR family protein [Reinekea sp. MED297] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 138/288 (47%), Gaps = 6/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F VA +GSFT A E+L LS +S+ +S LE ++G++LF R R + LT++G + Sbjct: 5 DTMKAFVAVAEAGSFTKAGEKLELSNQLVSKYVSQLEEQLGVRLFNRTTRNVRLTQEGEQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + + G+L I+ + L +++F YPD+ + Sbjct: 65 CLQHALHILESVDDMENHFGQLQAAAKGQLHISAPVSFATQYLGPLVRDFKKAYPDVGVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D A+R+ ++ SSLI +++ + + AAP YL P ++ Sbjct: 125 LELSDRKVDVVEEGFDVALRIGH-LKDSSLIAKRVAPVRLVLCAAPSYLDQHGVPEHPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L + + + + + N L V R + + + N+ ++ V G G L P Sbjct: 184 LIGSHFLRYSYMEYAPLS--NPLMKVLRAHSQNNPNGIIANNGDILVSAAVAGEGYILQP 241 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +IV + + L I++D +Y YP KL+AF +F+ Sbjct: 242 TFIVSEPLKSGQLSIILKDYEPEPMGLYAVYPHRKLLAPKLRAFIDFM 289 >gi|167033203|ref|YP_001668434.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859691|gb|ABY98098.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 303 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 144/289 (49%), Gaps = 11/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F VA+ SF A++L +S + IS++I LE + ++L +R R +T++E+G + Sbjct: 8 DDLNIFLQVAKRASFAAVADELGMSAAYISKRIRMLEQTLEVRLLHRTTRRVTVSEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ +++ ++ ++ +P+G+LRIA+++ LG+ + L E YP + I+ Sbjct: 68 VYQWALQIFDAVQRMGDDISAQHREPAGQLRIASSLGLGRRFVAPALSELAERYPRLDIR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + +LI + L AAP YL P + E Sbjct: 128 LDVHDRLVDLIAEGVDLDIRVGNAI-APNLIAKPLARNRRVLCAAPAYLARRGTPKVLGE 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H+ + +I + F W L D G L N Q+C+ G GI L Sbjct: 187 LASHDCL----VIKERDHPFGVWQLMGPDGEEGVRVTGGLSTNHGEVAHQWCLDGRGILL 242 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V D + LV+++ED P+ ++ Y L ++ K++ +F Sbjct: 243 RSWWDVHDSLQDGRLVQVLEDYHQPA-DIWAVYTSPLASSAKVRVAVDF 290 >gi|50122298|ref|YP_051465.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49612824|emb|CAG76274.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 293 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V +GSF+ A+ +L + Q ++S+ I LE ++ L R RGLT TE G + + Sbjct: 7 LETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLVTLLLLRSTRGLTPTEAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L Q + S SG+LRI + + + L EF+ +P++ + +I Sbjct: 67 EQIAPALKMLGEAQDHIVSGSASLSGRLRICAPVTFARLHIMPRLHEFMAEHPELNVDVI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID+ + D A+RL + ++ SSLI ++L + M A P Y P S L Sbjct: 127 LDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGIPASPDALA 185 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H + + G+ + + + T P G R+S + + + G+G+A+ Sbjct: 186 AHPAVIYLQGERTDRWIFSQDGTQTTVFPNGRIRVSAAE-----GVRAAVLSGAGLAVAS 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ +N +V ++ ++ YP + + + F F+ Sbjct: 241 EWMFAPELENVQVVTALDSWTLGKMDLWAVYPGGRMTSARARIFTGFV 288 >gi|325920261|ref|ZP_08182209.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] gi|325549254|gb|EGD20160.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] Length = 303 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F A +GSFT AAE+L L+ S++ + I+ LE +G++LF R R L LT+ G+ +RV Sbjct: 12 IFVSAADAGSFTAAAERLSLTSSAVGKAIARLEARLGVRLFARTTRRLALTDAGAAFYRV 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +LE + L+ P+G+LR+ + G+ + L F YP +Q + Sbjct: 72 CVKVLDELEEAEHVLRAEGQAPTGRLRLDLPVSFGRRKVLPVLLPFFQRYPGLQPSISFT 131 Query: 130 NKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D++ + D A+R+ P Q SSL R L AAP YL + P SI L Sbjct: 132 DRFVDMAEEGIDIAVRIGGPDQWHSSLGHRYLGHEKRVFCAAPQYLAHRGTPDSIAALLA 191 Query: 189 HNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H+ + +G WL V++ + R+ + + + V G GIA Sbjct: 192 HDAVLYGQ---ANRSSSPWLLRHGAGPVEQRAMDARVVFGNAEAQVDAV---VAGLGIAQ 245 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 LP +++ + +LV ++ T ++ + A + KL Sbjct: 246 LPTWLIDHHLQRGSLVAVLPQCDTEGLPLHLVWMRARQLLPKL 288 >gi|307321677|ref|ZP_07601068.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306892706|gb|EFN23501.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 295 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 11/272 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA SFT AA +L SQSS+S I LE +G++L R R + TE G +L Sbjct: 9 LLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAGEQLF 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E L E KP+G RI +L L FLL YPDI+++L+ Sbjct: 69 STLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIKVELV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ DI + D +RL ++ + R M AP L++ P + QEL Sbjct: 129 AESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPRPKTPQELT 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H I +P + W +R E R+ + N I++ + G G+ + Sbjct: 189 THRCINL--RLPSYGGFYAW--EFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLTYV 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + +V++ N LV++++D TP F Y Y Sbjct: 245 HEDVVREYLKNGRLVQVLDD-WTPPFPGYHLY 275 >gi|150378261|ref|YP_001314856.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032808|gb|ABR64923.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 291 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 13/250 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F VAR+ SF AAE L + S++SR+IS LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVARARSFRKAAEALGMPNSTLSRRISELEKAIGLRLLHRTTRKIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L +PSG LR++ +DL L + EF YP I + Sbjct: 65 YFERSKRIVDEARLAHEQLGAMLEQPSGVLRVSLPVDLATFYLTPIIGEFARHYPGITFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ K ++ SSLI R + H YA+P +++ EP + Sbjct: 125 FDLTPRRVDLVAEPFDLAIRIGK-LEDSSLITRLIGRHSRHLYASPGHIEASGEPARPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L KH I + W T+ R + ++ +NS I V GIA Sbjct: 184 LAKHECIGM-------LRSPIW--TLHRGANKVDVAVRGRFTLNSVGMIRALAVNHQGIA 234 Query: 243 LLPDYIVKDN 252 LLP+ I+ D+ Sbjct: 235 LLPEKIIADD 244 >gi|293392431|ref|ZP_06636753.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291425085|gb|EFE98292.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 297 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 136/298 (45%), Gaps = 14/298 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ +LR F +A GSF AA L +S S++S+ + LET +G++L R R + TE G Sbjct: 5 DFAELRAFVAIAEHGSFARAAAHLGMSASALSQTLRNLETRLGVRLLNRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++L + L+ ++ + +P+G LR+ T + L + F YPDI Sbjct: 65 AQLWERLRPLMANLDAAVAQVIDQRQQPAGLLRLNITRVAAMHFLAPRISAFNAQYPDIT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L +++K +DI D +RL + + + + + M AAP+YL EP + Sbjct: 125 LDLNVEDKLVDIVAGGFDAGVRLHEKLDKDMVAIKLGGELRMRVVAAPNYLSRYGEPQTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++L +H + + P + W +D + P L VN ++Q + G Sbjct: 185 RDLLQHRCLNY--RWPTNGNLYRWEFERGAEKLDIAVEGP----LVVNEPEILVQAAIDG 238 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA L ++ + L+ +++D P Y YP + L+AF +F K Sbjct: 239 MGIAYLFEHQIAAGLAERRLLPLLDDWTPPFPGFYLYYPANRQMPRPLRAFIDFARAK 296 >gi|190573017|ref|YP_001970862.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010939|emb|CAQ44548.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 13/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR + +GSFT AAE+L + S++SRQ+ LE + ++L R++R L+LTE G + Sbjct: 7 LRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGRDYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + + +L+ + +PSG++RI+ + L L FL YP + + L Sbjct: 67 REAATLLDRLQEADDRARAGQAQPSGRVRISVPQVVASQELPHWLPSFLQRYPQVTLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D++ +D+ D A+R+ + S L+ R+L + AAP YL P +L+ Sbjct: 127 ADDQLVDVVGGGFDLALRIAASLPDSQLVARELASCPRILVAAPAYLARHGLPRQAADLE 186 Query: 188 KHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H L+ F +P A+V G+ L+V++ ++ + G GI+L Sbjct: 187 QHTLLGFSPTPSMPPWQLQGPRGASVSVDAGQ----RLRVDATPALYAAALAGMGISLFT 242 Query: 246 DYIVKDNPNLVRIMEDVITPSFTV----YFC-YPEALKNTGKLKAF 286 V+++ R++ + P++ YF YP A K++A Sbjct: 243 ALTVQEDLRAGRLIR--VLPAWHAGQRRYFALYPHARALAPKVRAL 286 >gi|163731382|ref|ZP_02138829.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] gi|161394836|gb|EDQ19158.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] Length = 298 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +WD LR+F VAR S + A ++L L +++ R+I LET + LF + +G LT Sbjct: 1 MQTNWDDLRIFLAVARDNSLSGAGKRLRLDPATVGRRIQKLETSLQTVLFTKSPQGYALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G L + + EL E S + SG++RI LL L P Sbjct: 61 ETGQALLARAEQAETAMRAAVAELPEQSDRLSGQIRIGAPDGAANYLLPQVCAAILRENP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+++Q++ + ++S AD AI + P + LI +K+ +H A+ Y++ Sbjct: 121 DLEVQIVALPRVFNLSRREADMAIAVSAPT-AGRLIVQKITDYKLHLAASQEYIRENGAI 179 Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 S+ +L +HN++ + D+I + ++L IG ++ L NS + G Sbjct: 180 QSVADLARHNVVGYIADMI--FDRELDYL----EEIGLTKVP-LASNSVSVQLNLIRQGG 232 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ ++ D+ + P + RI+ + ++ + Y E + +L+ F Sbjct: 233 GVGVVHDFALPSAPEVSRILTEDVSLTRAFYLIRHEDDRRNARLRRF 279 >gi|15800008|ref|NP_286020.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 EDL933] gi|12513092|gb|AAG54628.1|AE005207_3 putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. EDL933] Length = 329 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 149/300 (49%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ A ++ ++ +++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 36 FALIVRAGSFSRAVSEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 95 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 96 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323 >gi|33591706|ref|NP_879350.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33571349|emb|CAE44827.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gi|332381125|gb|AEE65972.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 307 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 18/301 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ A+ L + +S +SR+IS LE +G++L R R L LT G Sbjct: 3 DLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+ + +++ P+G + ++ + + Q +L L EFL +P + Sbjct: 63 ERYLHYCQEMTASARAAEDAMRQLQSAPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL++ N+ +D+ + D A+R+R + + + L+ + L A+P YL+ P + Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 QEL H ++F D + W T R GE +Q N ++ + Q V G Sbjct: 183 PQELASHRTLSFND----PQNEVRWPLTNQR--GESVEVAVQPVLASNDFIVLTQAAVRG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294 GIALLP + LVR++ D +P V+ YP G + A R F+ FL Sbjct: 237 RGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYP---SRRGMMPAVRAFLDFLAK 293 Query: 295 R 295 R Sbjct: 294 R 294 >gi|317407048|gb|EFV87068.1| hypothetical protein HMPREF0005_05830 [Achromobacter xylosoxidans C54] Length = 296 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 5/200 (2%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M + D++R +F VA GS T AAE + S++SR+IS E+++G+KL +R R L Sbjct: 1 MKKELDRMRDMALFVQVAALGSLTRAAESTGVPASTLSRRISEFESQIGVKLLHRSTRRL 60 Query: 58 TLTEQGSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 LT+ G + L R+T +V + EL+E +P+G LR+ +D + L ++ Sbjct: 61 ALTDIGQRYLERIT-DVVDRARAISGELEEEMGRPTGHLRVCAPVDFNAYFPEAALADYC 119 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 +P ++ +L + D++ + D I +P Q+S +++R++ YAAP YL+ Sbjct: 120 ASHPGVRFELHCSAQLPDLATEPYDICIATTEPPQASRMVRRRIGMAEYQLYAAPAYLRA 179 Query: 177 CREPLSIQELDKHNLITFGD 196 P EL +H + D Sbjct: 180 YGVPAHPAELARHRCVVMPD 199 >gi|296158123|ref|ZP_06840955.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295891459|gb|EFG71245.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 312 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + YPD+QI+L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQERYPDVQIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ L + S L+ ++L + A A+P YL+ P + +L Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H + ++ W T D P GE I + QVN ++ G G+ Sbjct: 186 VRHTCL---QMVTPVFPTDKW--TFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L+P Y + LV ++ + + + +Y YP K++ + F+ Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQAMNLYALYPSRQYLDAKIRTWVEFL 291 >gi|206559025|ref|YP_002229785.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035062|emb|CAR50935.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 320 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 20/298 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKRGTPQTIAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 L HN + D N + V R+S L VN + + G+ Sbjct: 186 LANHNYLR---------RDSNSTMLDSLVIDAAAASRVSLNGNLIVNHLEGLRAAVLAGA 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIALL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 237 GIALLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|152970576|ref|YP_001335685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330015461|ref|ZP_08308163.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|150955425|gb|ABR77455.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328531682|gb|EGF58513.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 311 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A + SF AA L +S S++ + ++ LE ++G++LF R R ++LT +G+ Sbjct: 6 SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + EL S +P+GKLRI+ + +G LL L F LYP +++ L Sbjct: 66 LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQVELDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +++ + D AIR + S LI RKL A+P YL P S EL Sbjct: 125 DFSDRLVNLIDEGVDVAIR-SGELADSRLIARKLGGFRFVLCASPAYLAEYGAPDSPAEL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLP 245 H I F P W R G+ R + + VN+ + ++ G GIA +P Sbjct: 184 AAHKCIFF--RFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYVP 241 Query: 246 DYIVKD 251 D++V++ Sbjct: 242 DFVVRE 247 >gi|300692925|ref|YP_003753920.1| transcriptional regulator, lysR family [Ralstonia solanacearum PSI07] gi|299079985|emb|CBJ52661.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 312 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 7/295 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF AA+ L +S + ++R ++ LE +G +L R R L+LT+ G Sbjct: 7 MRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + S G LRI + G ++L L F LYP++ + Sbjct: 67 QRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI D D I + + S L+ R++++ M A P YL+ P +++ Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDIV 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246 H +I P+ ++ + + I P L V S +M VL GIA+L Sbjct: 187 DHRVIAMWH--PQLRHEWEMTSPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 Y+ + ++ LVR++ P ++ YP K++ F +++ +A + K Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEAK 298 >gi|170751133|ref|YP_001757393.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657655|gb|ACB26710.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 297 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 18/295 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS W ++ VF VA +GS + A +L LSQ S+SR + LE +G L R R ++LT Sbjct: 1 MSDRWQEMAVFVRVAETGSLSRAGRELMLSQPSVSRIVGALEARLGTTLLLRTTRSISLT 60 Query: 61 EQGS-KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 E GS L R S + E Q S++ G +R+A + G + L FL + Sbjct: 61 EAGSLYLERARSLLAEVEEAEQAARGVDSLQ--GAIRLAMPVLYGSRAVVPALATFLARH 118 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 P ++I++ + + ++ MD D AIRL P+ S+ R+L T+ A+P YL + Sbjct: 119 PGLRIEITMSDARQNLVMDGVDIAIRLGVGPLADSTFGARRLATVERLVVASPAYLSSRG 178 Query: 179 EPLSIQELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P+ EL +H+ I FG + D + TVD P + L +NS I+ Sbjct: 179 TPVIPAELARHDCIVQHGLFGRESWRFTRDGT-VTTVDVP------ARLWINSAPGILAA 231 Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V G GIAL + D LV+++E VY +P + + K++A Sbjct: 232 AVAGMGIALATRVMAGDELRAGQLVQVLEPYRLDPAEVYAVFPAGPRPSAKVRAI 286 >gi|307307304|ref|ZP_07587040.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306901818|gb|EFN32418.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 318 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 17/261 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VA GS T A L + S +SR I+ LE +G +L R R L+LT++G Sbjct: 13 AFITVAEKGSMTEGAVTLSTTPSVLSRAITRLEARLGAQLMRRTTRRLSLTDEGRAYLEQ 72 Query: 70 TSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ++ + +Q + +G +RI+ G L L F ++P++Q++L + Sbjct: 73 ARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHYRLPAMLDRFTQIHPEVQVELSI 132 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+++D+ + D AIRL P +S L+ RKL + A+PHYL+ P S+++L Sbjct: 133 TNRNVDLVAEGYDLAIRL-GPFPASGLVARKLEDAPLRLVASPHYLERAGVPRSVEDLAT 191 Query: 189 HNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H + F ++P WL V+ P G R+ + L ++ G GI Sbjct: 192 HQCLPF--VMPSTGRCAPWLFRVEGRDVDWTPPGRIRV----FDDVLGVVSLAENGLGIC 245 Query: 243 LLPDYIVK---DNPNLVRIME 260 D+IV+ + LV ++E Sbjct: 246 QTYDFIVRGRIEQGRLVDVLE 266 >gi|309781960|ref|ZP_07676691.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308919304|gb|EFP64970.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 308 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT+ G Sbjct: 7 ETMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQA 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ Q ++S G+LR+ + + + ++ L L +P+++I+ Sbjct: 67 FYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D + DC +R+ + SSLI R L +H A+P Y+ P ++ + Sbjct: 127 LSSTDRRVDPVREGFDCVLRIGT-LTDSSLIARPLGQLHQVNCASPAYIARYGMPKTLDD 185 Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LD H ++ T G P W TVD R P + V+S S C G G Sbjct: 186 LDHHRIVHYVQTLGTKSP------GWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLG 239 Query: 241 IALLPDY-----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + P Y + D LV +M D P V YP +++ F N++ Sbjct: 240 MIQAPVYAGLSSAIADG-TLVDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWM 293 >gi|193782691|ref|NP_436119.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] gi|193073147|gb|AAK65531.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 291 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 7/253 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F VAR+ SF AAE L + S++SR++S LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVARARSFRKAAEALGMPNSTLSRRVSELEKAIGLRLLHRTTRKIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + +L +PSG LR++ ++L L + EF YP I + Sbjct: 65 YYERSKRIVDEARLAHEQLGAMLNQPSGVLRVSLPVNLATFYLTPIIGEFARHYPGITFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ K ++ S LI R + H YA+P Y++ EP + E Sbjct: 125 FDLTPRRVDLVAEPFDVAIRIGK-LEDSGLITRLIGRHSRHLYASPGYIEASGEPATPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H I G L + VD + +NS I V GIALLP Sbjct: 184 LAEHECI--GMLRSPIWSLHQGINKVDVAVR----GRFTLNSVGMIRALAVNHQGIALLP 237 Query: 246 DYIVKDNPNLVRI 258 + IV ++ R+ Sbjct: 238 EKIVAEDVAFGRL 250 >gi|16125722|ref|NP_420286.1| LysR family transcriptional regulator [Caulobacter crescentus CB15] gi|221234478|ref|YP_002516914.1| LysR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13422844|gb|AAK23454.1| transcriptional regulator, LysR family [Caulobacter crescentus CB15] gi|220963650|gb|ACL95006.1| transcriptional regulator, LysR family [Caulobacter crescentus NA1000] Length = 298 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 8/263 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L VF VA SF A+E L LS++++S+ ++ LE +G +L R +R L LT+ G Sbjct: 6 DLEGLAVFAKVAELRSFAAASEALALSKATVSKAVTRLELRLGARLLNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L S V + E + E S P G +R+A + LG L L FL YPD+ Sbjct: 66 QALVERASRVLAEAEAAEEEASSQSAAPRGLVRMAAPMSLGVASLAPVLPAFLEAYPDVS 125 Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L + +D I M + D A+R+ + SSL+ R+L + H AAP Y P Sbjct: 126 IDLHLSDATVDLIGMGF-DIALRVAD-LPDSSLLARRLRAVQRHVVAAPAYWTAHGRPTH 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H +T+G F + + PR S L+ N+ +++ + G+G+A Sbjct: 184 PADLAEHRGLTYGHQASPETWRFQRAGGEEAAV-RPR-SVLRANNGDALLPPLLAGTGVA 241 Query: 243 LLPDYIVKDNPNLV-RIMEDVIT 264 +LPD+IV P L R +E V+T Sbjct: 242 MLPDFIV--GPALADRRLEAVLT 262 >gi|288934003|ref|YP_003438062.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288888732|gb|ADC57050.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 294 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA +GSF AAE L L S+++ I LE + ++L R R ++LT +G + Sbjct: 7 MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEQYLKVRLLNRTTRRVSLTPEGLQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E ++ L ES +P G+LR+ + ++ +L +F YPDI + + Sbjct: 67 AQCREILALIEHSESSLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR+ + + +SSL+ R L A+P YL+ P S + L Sbjct: 127 VSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGRFRWVTCASPDYLREYGVPSSPEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 KH + + + ++F ++ T P+ VN ++ C+ G G+A L Sbjct: 186 KHRAVHYFSGQARRADEFRFVRHGETFSVPVS----GNAAVNETGLYIKMCLAGFGLAQL 241 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + IV D+ LV ++ D P V YP + ++AF ++ Sbjct: 242 AENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 290 >gi|254247014|ref|ZP_04940335.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124871790|gb|EAY63506.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 320 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 20/298 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 L HN + D N + V R+S L VN + + G+ Sbjct: 186 LANHNYLR---------RDSNSTMLDSLVIDAAAASRVSLNGNLIVNHLEGLRAAVLAGA 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIALL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 237 GIALLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|13472647|ref|NP_104214.1| transcription regulator [Mesorhizobium loti MAFF303099] gi|14023394|dbj|BAB50000.1| transcription regulator [Mesorhizobium loti MAFF303099] Length = 292 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF+ AA L + QS++S+ ++ LE +G++L R RGL+ T+ G + Sbjct: 7 MSTFIRVIETGSFSAAARHLRVGQSAVSKAVAQLEERLGVRLLSRTTRGLSPTDAGLSFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ++ +G LRI T++ G+ + LK FL +P + +++ Sbjct: 67 EGAKRAVDEADEAENAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEVA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D++++D+ + D +RL + + I RK+ AAP YL EP++ EL Sbjct: 127 MDDRNVDLVEEGVDVMLRLGESFAPAH-IGRKIAACRRLVVAAPSYLAREGEPIAPDELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 +H I F + W T R E ++ L+V S I + + G G + Sbjct: 186 RHEAILF----VRAGTSIRW--TFRRGAEEVSLAGQGRLRVTSAEGIREAVLSGIGFTVG 239 Query: 245 PDYI--VKDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ + VR I+ + P ++ +P K + + + F F+ Sbjct: 240 SEWMFDAELRSGAVRPILTEWTLPPVELWALFPAGRKASARARTFVEFL 288 >gi|15829587|ref|NP_308360.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|189404069|ref|ZP_02786953.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|217324650|ref|ZP_03440734.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|13359790|dbj|BAB33756.1| putative transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|189367730|gb|EDU86146.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|217320871|gb|EEC29295.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|320192377|gb|EFW67021.1| Putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. EC1212] gi|326343430|gb|EGD67194.1| Putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. 1044] Length = 308 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 149/300 (49%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ A ++ ++ +++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 15 FALIVRAGSFSRAVSEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 75 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I D D IRL + + S LI KLVT+ A+P YLK P + Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238 QEL HN + + + + V G Y+ S+++ + G Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244 Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + ++ N L I+ED V P F +Y ++ K++AF +F+ K Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302 >gi|325122705|gb|ADY82228.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 202 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 4/197 (2%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L VF +VA S + AA L + S ISR I+ LE ++GI+ F R R L Sbjct: 1 MSRQFDHLADIEVFLIVAEKLSISAAAIYLATTPSVISRTITRLEKKLGIQFFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++++ G L L++FLL Sbjct: 61 SLTEAGQLYYEKMQHAFQLIDHAERAIQGKQLQISGKIKLSVPTTYGHYRLPELLQKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + SS+LI R L + A+P YLK Sbjct: 121 QYPDIQIEVSISNRNVDLIAEGFDLAIR-QGQLPSSTLIARPLELAPLQLVASPEYLKRM 179 Query: 178 REPLSIQELDKHNLITF 194 P ++++L+ H I F Sbjct: 180 GVPQTLEDLNHHQCIAF 196 >gi|293602369|ref|ZP_06684815.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292819131|gb|EFF78166.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 296 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 139/303 (45%), Gaps = 27/303 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F VA+ +F+HAAE L++ S++SR++S LE VG++L R R + LT Sbjct: 1 MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSVGMRLLNRSTRKIDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ + + +L + +V+P G+LRI+ L Q L + EF +P Sbjct: 61 EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVISEFREQHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 DI+ L + ID + D +R ++P SSLI RK+V + YA+P YL E Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQP--DSSLISRKIVLMAHQLYASPDYLARHGE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +L H L P E+ F L + D ++ +QV+ LS +L Sbjct: 179 PRVPADLAHHEC-----LRPTMREESSFWMLHSGD------KVERVQVSGRLSANNVGML 227 Query: 238 ----GSGIALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 G G+ + P + LVR++ D ++ P + K KAF Sbjct: 228 GRLAGQGLGITPLLVFDAMERAIKQAGLVRVLPDWSLTPLPLFALLPSRML-PAKTKAFL 286 Query: 288 NFI 290 +FI Sbjct: 287 DFI 289 >gi|120600264|ref|YP_964838.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1] gi|120560357|gb|ABM26284.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1] gi|319425041|gb|ADV53115.1| transcriptional regulator, LysR family [Shewanella putrefaciens 200] Length = 329 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 137/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L+ T E+ + SG LRI +L + F+ ++P + ++ Sbjct: 64 FYLRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I + +D+ D A + + + L+ R + T + YA+P YL P + QE Sbjct: 124 VISSAESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAAHGIPKTPQE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 ++ HN+ F K + W+ + E R+ NS +++ + G GI Sbjct: 184 IESHNVSLFRLSNGKIFNEL-WIGLEE----EVRVRGNFCSNSVEVAVEFALQGRGIVYA 238 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V + LV ++ ++ + YP + + F +FI Sbjct: 239 PTEVVAEFVETGELVTLLPEIDAHQGECFLAYPSRRYVSLASRRFIDFI 287 >gi|298488058|ref|ZP_07006095.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157337|gb|EFH98420.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 302 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H+ + +G W V G+P I ++ N+ + V G G Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP +IV + +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|260753861|ref|YP_003226754.1| LysR family transcriptional regulator [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553224|gb|ACV76170.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 304 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 6/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VA+ SFT AA +L +SQS++S + LE + + L R R +T T G Sbjct: 9 NDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAGEY 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + ++E + E +P+G +RI +T D +++ +K FL YP ++I+ Sbjct: 69 LIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVKIE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ D K +DI + D AIRL + + I +P Y +N P + Q+ Sbjct: 129 LVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETPQD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H IT +P + W R I L NS I C+ G G+A + Sbjct: 189 LLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLAHM 246 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P+ + K + L+ ++ED + C+P +N F Sbjct: 247 PEIMAKKYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPFSLF 291 >gi|254418364|ref|ZP_05032088.1| hypothetical protein BBAL3_674 [Brevundimonas sp. BAL3] gi|196184541|gb|EDX79517.1| hypothetical protein BBAL3_674 [Brevundimonas sp. BAL3] Length = 290 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A GSF AAE + +S +++ + LE +G L +R R +LT+ G + Sbjct: 1 MAVFVKSADLGSFAAAAEAMGMSPQMVAKHVVFLEDRLGAALLHRTTRRQSLTDVGRAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E Q+ +P G LR+ + G L + +L YPD+QI L Sbjct: 61 DRCKLVLAEAEAADTIAQDMRSQPKGVLRVNAPMTFGSFTLAPFITRYLARYPDMQIDLT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D + D +R+ + SSLI L + A A+P YL P + +L+ Sbjct: 121 LNDRFVDPLEEGFDVMVRI-GAVGDSSLIAHPLAPYRLIACASPTYLARRGAPETPADLE 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + P WL T + E + S ++ N + +++ + G G+ L P+ Sbjct: 180 RHDCLAYAYWSPSI--PCRWLFTRNGRDEEIKASGRMRSNDWKALLHAAIEGYGVTLGPE 237 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++K D+ LVR++ + P ++ YP + T +++F Sbjct: 238 SVMKAEIDSGRLVRVLPEYEGPVRPMHVLYPAGRRPTVNVRSF 280 >gi|159161967|ref|NP_396599.3| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141758|gb|AAK91040.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 320 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 6/296 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ LR F ++ SGSF AA L ++ S++S I LE +G KL R R + LTE G Sbjct: 5 DFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S+L R + + +T +L E KPSG L++ + ++ L F Y DI Sbjct: 65 SRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDIT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + + +DI++ D A+ + IQ + R + YA+P YL P Sbjct: 125 IDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRLGPELKRIVYASPRYLARFGAPSEP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 +L HN I F P + W + E +S L V+ + + G GI Sbjct: 185 GDLVHHNCINFRG--PHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKGIG 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + I K D+ +L+ ++E + P CYP+ + LKA +++ ++R Sbjct: 243 YGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSR 298 >gi|251788354|ref|YP_003003075.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247536975|gb|ACT05596.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 294 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 136/280 (48%), Gaps = 17/280 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F +VAR GSFT AA +L L+QS +SR I LE +G++L R R L+LT+ G Sbjct: 6 NYNDLYLFMLVAREGSFTRAATRLGLAQSGVSRAIRELEARLGVQLLSRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+R + L+ L PSG +RI + +L L F L YPDI+ Sbjct: 66 EQLYRTALAGFDSLDLGLATLAHFRDTPSGTVRINASQHAIDMVLLPKLAAFRLRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ ++I + D IRL + + R + M A P + ++ P + Sbjct: 126 LELISESRFVNIIDERFDAGIRLGAEVDEGMIAVRIAPDMEMVVVATPDHFRHYGFPQTP 185 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVL 237 +L H I + G L ++W D R +P+ + +SY+ + L Sbjct: 186 ADLVVHPCIAYQFADGSL-------YHWELWQDGKRLRHKPQGQWVFSDSYMEVAA-ARL 237 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G G+A +P+ +V D+ L+R+++ ++ YP Sbjct: 238 GLGLAYVPEELVADDLAQGTLIRVLQRYSHRLAGLHLYYP 277 >gi|70729856|ref|YP_259595.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344155|gb|AAY91761.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 297 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 7/257 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA +L+ + ++++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAARRLNTTHATVARHIEAVEKALGTALFVQHAQGYELTPA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ +SS P GK+R+ T LG L + YP + Sbjct: 62 GEALLKHAEAMENVALLVQEEITQSSA-PLGKIRVGVTEGLGVKFLASRMVGLFERYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P + L+ RKL + YA+ YL S Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-SADMLVTRKLTDYRLALYASQAYLDRAPPLRS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H I + D + E L ++ P++ S ++ + G GIA Sbjct: 180 REDLGRHAWIGYVDDLLFSQE----LMFLNSFCRNPQV-VFHSTSVIAQQEAARSGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIM 259 +LP Y+ +P LV ++ Sbjct: 235 VLPCYMAAADPQLVPLL 251 >gi|332529727|ref|ZP_08405681.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040748|gb|EGI77120.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 304 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 142/295 (48%), Gaps = 16/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +GSF+ A + +Q ++++ ++ LE + ++L R+ RG+++TE G+ + Sbjct: 7 MQVFVRVVETGSFSKTAREFATTQPTVTKLVAALEESLRVRLLNRNTRGISVTESGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E ++ + G LRI T++ G+ ++ +F+ +P +Q+ L Sbjct: 67 EKCKNIVRDAEEADNSVRLQQTQAQGLLRIGTSVAFGRRVITPLALDFMAKHPQVQLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ D+ D A+R+ K + S+L R L T A+P YL+ P EL Sbjct: 127 FEDRYTDLVAQGIDVAVRMGK-LADSTLGARFLTTNPWVLVASPKYLRKQGMPKKASELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243 +H + + + + D W T P GE P L+ N+ +++ G GIA Sbjct: 186 EHPALIYSSV----LGDDVWRMT--SPKGEAVTVPVAGRLRSNNLSAVLAAARNGYGIAA 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +P Y+ + + ++V +++ + P ++ +P GK+ AF +L++R Sbjct: 240 MPRYVASESLKSGHVVEVLQGHVLPEQEIHAVFPSPKLVPGKVMAF--IAYLQSR 292 >gi|330943890|gb|EGH46123.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 301 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 131/293 (44%), Gaps = 10/293 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + +S + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVSNHLRALEERLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ P+G LRI + G +L L EF +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL +SS LI R L + AAP YL P + Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPTHPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +HN + F P E W T D + + N+ + Q G Sbjct: 184 DLRQHNCLAFA--YPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAGM 241 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ +LPD +V+ + LV + D P Y + KL++F + Sbjct: 242 GVVMLPDALVQRDLQEGRLVALFPDYQLPRRPTNLLYVQDRYRLPKLRSFVEY 294 >gi|226943891|ref|YP_002798964.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226718818|gb|ACO77989.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 299 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 143/285 (50%), Gaps = 9/285 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ ++++ LE ++G++LF+R R + LT +G+ Sbjct: 13 VFVQVAETRSFVAAGRVLGISASAVGKRVARLEEKLGVRLFHRSTRSIALTAEGALFLER 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E T++ L ++ P G+LR+ ++ L +L+ L +F+ YP+I++ L Sbjct: 73 SRRILAEIEATELALSRTAGAPRGRLRV--SLPLVSSLVLPVLADFMAEYPEIELDLDFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R + + S L R+L + +P YL+ P +L H Sbjct: 131 DRLVDVIDEGFDVVVRTGQ-LSDSRLSARRLGAFRLLVVGSPDYLERRGVPRRPADLAGH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDYI 248 + + +E + D P EP++ V N+ + + + G G+A LPD+ Sbjct: 190 ACLHYRFSNTGKLEPWPLRRLPDEP--EPQLPVSMVCNNIETRVCFAQRGRGLACLPDFA 247 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ L +++D + + Y +P + + +L+AF +F+ Sbjct: 248 IRGALAEGRLRSVLDDYMEGTGYFYLLWPSGRQVSPRLRAFIDFL 292 >gi|170691056|ref|ZP_02882222.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170144305|gb|EDT12467.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 348 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 133/294 (45%), Gaps = 17/294 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----KL 66 F VA GSF A ++L + +S++SR + LE ++ +LF R R +LT +G Sbjct: 47 FLAVANEGSFAKAGDRLGIGRSAVSRNVQKLEAQLDARLFLRTTRSTSLTREGELFYQNC 106 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H + LE + EL+ P G LRI +T G+ ++ L+ F YPDI ++L Sbjct: 107 HPGVERIVQALEDMR-ELRNGP--PRGHLRICSTPGFGRKIVAPLLRGFRSRYPDIALEL 163 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+++ D D D R + ++ S ++ ++L+ + M A+P Y K P + +L Sbjct: 164 LLNDRPADFIADRVDVGFRDGR-MEDSEVVAKQLIPMQMIVCASPQYAKKHGVPRHVDDL 222 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALL 244 +H I F + +W VD I + PR N I+Q + G GIA L Sbjct: 223 AQHRCINFRSASGRVS---DWEFKVDGLIQKQLPRAQ-HTFNDMDLIVQAVLDGEGIAQL 278 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 P Y V D LV + Y CY +++ F +++ + R Sbjct: 279 PAYQVCDLLRKERLVSCLAQYAPDDRGHYVCYLSRKHLPARIRVFIDYMAEQTR 332 >gi|146343004|ref|YP_001208052.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195810|emb|CAL79837.1| Putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 304 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 141/301 (46%), Gaps = 22/301 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +R+F V R GSF A Q + S++SR ++ LE ++G +L R R LT TE Sbjct: 1 MDLQAIRIFVEVLRLGSFAAVARQHAVDPSTVSRTVAVLEEQLGFRLLQRSTRRLTATEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +L+ + E ++ PSG+LR+ ++ G ++ L L+P + Sbjct: 61 GVRYFERVQPLLDELDRAESEARDIVAAPSGRLRVTASVAFGATVVVPRLARLRALHPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L+L ++ +D+ + D AIRL + + L+ +L+ H A+P Y+ +P Sbjct: 121 DIELMLSDQIVDVVAERIDIAIRLGARLD-TGLVGTRLMQTRYHVCASPDYIARNGKPAR 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + L+ H+ + F P W A + P+ + +++ L++ + + Sbjct: 180 PERLEDHDCLLF----PYQGFRTQWRFRSRGGAVTEVPVK----GGIVISNALALHRAAL 231 Query: 237 LGSGIALLPDYIVKDNPNLVRIME-----DVITPSFT--VYFCYPEALKNTGKLKAFRNF 289 G G LL D++V + R++ +V +F+ + YP K++AF +F Sbjct: 232 EGLGPVLLADWLVGADLKHGRLVNLFPGYEVTATAFSTAAWILYPSRSYVPLKVRAFIDF 291 Query: 290 I 290 + Sbjct: 292 M 292 >gi|238792710|ref|ZP_04636342.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC 29909] gi|238728066|gb|EEQ19588.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC 29909] Length = 306 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE + +KL +R R L +T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQ Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC +R + I SLI R + + + Y AP Y++ P + Sbjct: 124 DMGVSDRMVDLIGDNVDCVLRGGE-INDQSLIARHVGDLQIGVYVAPSYVERLGAPAHPR 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ F G + P + + + G ++ N+YL + + Sbjct: 183 ELENTDHRIVGFLSSRTGKIDPLVLRSESEHIEI---TGSYVLAVDDGNAYL---EAGLA 236 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP Y+ + +L+ + ++ +P KL+ F ++I Sbjct: 237 GLGVIALPIYMAAAHQAVGSLIPLFAQWRISPMPLHLAFPPNRHVNAKLRVFIDWI 292 >gi|296115322|ref|ZP_06833961.1| probable transcriptional regulator protein, LysR family [Gluconacetobacter hansenii ATCC 23769] gi|295978145|gb|EFG84884.1| probable transcriptional regulator protein, LysR family [Gluconacetobacter hansenii ATCC 23769] Length = 299 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SG+FT AA+ L + ++++ I LE + KL R R + +T G+ + Sbjct: 7 MRAFVRVVESGNFTRAAKALGMPNATMTTHIQALEAHLKTKLLNRSTRRVVVTNDGAIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ L+ S V P+G++R+ + + ++ L +F YPDI I L Sbjct: 67 ERAKLIIADIDEIDASLKNSHVLPNGRVRVEMSGGIADLVVLPALHDFYNKYPDIHIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID + DCA+R P SSLI R++ A+P YL+ P ++L+ Sbjct: 127 VSDRPIDYIAENVDCALRSGAP-TDSSLIARRVAEFEFVTCASPFYLERHGIPKHPKDLE 185 Query: 188 K-HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H +I + G + N VD P S L VN + Q +G G+ Sbjct: 186 TGHQMIRYFRPQSGRALAVEFHRENKKICVDPP------SVLSVNDARTFTQGIRMGLGV 239 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P +V+ + LV ++ + P T+Y +P + +++ F +++ Sbjct: 240 GCVPQLLVQSDLRQGRLVELLPEWEQPPITIYLVFPSNRHVSNRVRVFSDWLI 292 >gi|84386215|ref|ZP_00989244.1| Transcriptional regulator [Vibrio splendidus 12B01] gi|84378985|gb|EAP95839.1| Transcriptional regulator [Vibrio splendidus 12B01] Length = 319 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 1/170 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +++F V SGSF+ AA+ L+++ SS++R I LE+++ LF R R L LTE+G Sbjct: 15 DLIKIFDQVVESGSFSKAAQALNMAPSSVARNIDNLESKIKSSLFKRSTRQLILTEEGQY 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++++ + E+Q + P G LR++ G L + EFL YP IQ++ Sbjct: 75 FYQKSAKILQDSNSLLEEMQGNQGIPEGLLRVSVFESFGNLCLTPLIPEFLERYPKIQVE 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 L LDN +D++ + D AIR+ P Q S L R L+T + AAP Y++ Sbjct: 135 LELDNNVVDLNSENIDVAIRIGTP-QDSRLKARHLLTNNTSLVAAPSYIE 183 >gi|226945638|ref|YP_002800711.1| LysR family regulatory protein [Azotobacter vinelandii DJ] gi|226720565|gb|ACO79736.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ] Length = 309 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 145/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + ++ LE ++G++LF+R R +TLT +G+ Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSVTLTAEGTLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + ++E ++EL +++ P G+LR+ ++ L +L+ L EF+ YP+I++ L Sbjct: 69 SRRILAEIEAAELELSQATAAPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P S L R+L T A+P YL P +L H Sbjct: 127 DRMVDVIEEGFDAVVRTGEPTD-SRLTARRLGTFRSVLVASPGYLDLRGTPQVPADLLLH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A P G P + + + N+ + + + + G GIA LPD Sbjct: 186 TCLHY--RFPNSGKLETW-ALRQEP-GAPELQLPTSMICNNIETRVCFALQGLGIAYLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ + L I+ D + + + +P + + K++A +F+ Sbjct: 242 FAIREPLADGRLQPILADHVERAGVFHVLWPASKHPSPKVRALVDFL 288 >gi|283856505|ref|YP_163309.2| LysR family transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|283775509|gb|AAV90198.2| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis ZM4] Length = 304 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 6/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VA+ SFT AA +L +SQS++S + LE + + L R R +T T G Sbjct: 9 NDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAGEY 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + ++E + E +P+G +RI +T D +++ +K FL YP ++I+ Sbjct: 69 LIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVKIE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ D K +DI + D AIRL + + I +P Y +N P + Q+ Sbjct: 129 LVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETPQD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H IT +P + W R I L NS I C+ G G+A + Sbjct: 189 LLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLAHM 246 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P+ + K + L+ ++ED + C+P +N F Sbjct: 247 PEIMAKKYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPFSLF 291 >gi|70731338|ref|YP_261079.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345637|gb|AAY93243.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 299 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 10/287 (3%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + VF VA + SFT A L +S S++ + I+ LE + +LF+R R ++LT Sbjct: 1 MDWLGSIPVFMQVAETRSFTEAGRLLGVSSSAVGKSIARLEERLETRLFHRTTRSISLTA 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G+ + ++E + +L +SS P GKLR++ G LL L EF+ YP Sbjct: 61 EGAGFLERCRRIAAEVEAAEFQLCDSSSAPVGKLRVSAPQVHG--LLMPVLAEFMQRYPQ 118 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I++ + L ++ +D+ + D +R P + S L+ R+L M +P Y + P Sbjct: 119 IELDIDLSDRMVDVVEEGFDLVVRTGNP-KDSRLLARQLGRFRMVLVGSPGYFQQRGVPQ 177 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240 + QEL H+ + +E + + D P EP + +S + +++ G G Sbjct: 178 TPQELRSHSCLRHTFHHTGKLEAWPFKVQADAP--EPVLPTRLTSSSIEAVEHAARSGLG 235 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 IA LPD++V+ L +++ + + + +P + KL+ Sbjct: 236 IACLPDFMVQAAVRRGELQTVLDPYLEHNGAFWVLWPSSRHAAAKLR 282 >gi|260556241|ref|ZP_05828460.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260410296|gb|EEX03595.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 298 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 14/292 (4%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ FY+ VA+ SF+ A QL L +S+++ I LET G++LF+R R ++LT+ Sbjct: 2 DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + E + +Q G L+I+ + ++ L +F YPDI Sbjct: 62 GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + D+ DC +R+ + + +SSLI R + + M A+P YL++ P Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGVPEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + +L++H LI + + + +F + G + S L VN+ + + G GI Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQG------GTVMMDSALSVNNTEAYIAAACAGLGI 234 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y V+D LV ++ PS + YP +L+ F N++ Sbjct: 235 IQLPYYDVQDKIERGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286 >gi|83648406|ref|YP_436841.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636449|gb|ABC32416.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 306 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 143/295 (48%), Gaps = 17/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W + F+ VA+ GSFT AA+ L+ S+S +S+Q+ LE + +L +R R L LTE Sbjct: 8 LEW--VAAFHQVAQDGSFTQAADSLNSSKSQVSKQVKALEALLQTQLLHRTTRSLRLTEA 65 Query: 63 GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G L R ++E+ + + +L E +V G LR + LG +++ LK F L Y Sbjct: 66 GEALFRYSTEIQALFRQATEVVSDLNEDTV---GVLRFTCPVSLGISMMPEILKLFRLRY 122 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P +++Q+ L N+ ++ + D AIR P L+ R L + A+P ++ + Sbjct: 123 PRVKVQIDLANESRNLIAEEFDLAIRA-TPQPDPYLVARPLGAMVDAICASPEFITRHGK 181 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + +EL + I + + W T +R I P + + N Y + Q V G Sbjct: 182 PETPEELTRFPCIVHN----QHQQLSQWRFTGPEREISVPIQAEIAANQYPMMRQCAVEG 237 Query: 239 SGIALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ LP Y +D + LVR++ED + + T++ +P KL F+ + Sbjct: 238 LGVTKLPFYEAYRDIQSGRLVRLLEDYPSHTHTLFVVFPAQRYQPKKLIYFKELL 292 >gi|167840298|ref|ZP_02466982.1| LysR-family transcriptional regulator [Burkholderia thailandensis MSMB43] Length = 306 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA+ L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAADVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L+EF ++P ++++ Sbjct: 65 FYERCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALRVVAPALREFTSMHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCIDTYDVRPVASPALLAEHGAARIE 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P L ++ + + G Sbjct: 185 SPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLCAFARQG 241 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 SG+ALLP+++V+ DN L+ + D P VY YP K++A+ +FI Sbjct: 242 SGVALLPEWLVRDDLDNGTLIDALPDYRFPQQGVYALYPSTRHVPQKVRAWVDFI 296 >gi|91224510|ref|ZP_01259772.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01] gi|91190852|gb|EAS77119.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01] Length = 309 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 143/274 (52%), Gaps = 8/274 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +KL + V+++GSF AA+ +++ +S +S+ I LE +G++L R R L+LT+ G + Sbjct: 5 NKLHLLLEVSKAGSFAKAADGMNIDRSVLSKHIKQLEEHLGVRLLNRTTRSLSLTQVGKQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ L+ TQ + +PSGK+RI+++ G+ LQ ++++FL YP ++ Sbjct: 65 IVEKADQISQLLDDTQQIAENFQTEPSGKVRISSSTLFGKLYLQPSIEKFLHKYPKASVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD+ +D+ D A R+ P++ SS++ RKL A+ + ++ P + E Sbjct: 125 LMLDDLHVDVIRSNFDIAFRI-GPMRDSSMVARKLAKNTTAIIASRNLIEKHGNPETPDE 183 Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L K I + G+ I ++ ++ A D P VN I++ G G AL Sbjct: 184 LVKLPFIIYSNGNFIVDKLKFYDK-AKSDGLDTYPISGSYMVNEAELIIESVKSGLGAAL 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSF-TVYFCY 273 + +++ +N NLV+++ + T F +Y Y Sbjct: 243 IGQFMLPNNLESSNLVQLLPEYETQDFGDIYAMY 276 >gi|88858573|ref|ZP_01133215.1| transcriptional regulator, LysR family protein [Pseudoalteromonas tunicata D2] gi|88820190|gb|EAR30003.1| transcriptional regulator, LysR family protein [Pseudoalteromonas tunicata D2] Length = 289 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 6/286 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R+ Y VA GS + AA L+++ +++ R ++ LE +GIKLF RH RG LT+ G Sbjct: 6 WDDYRIAYQVAIDGSLSKAAITLNINHTTVLRHVNQLEDSLGIKLFIRHQRGYQLTDAGF 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L +V+ ++ Q L +S + +G LRI + + + +L L+ F+ +P ++I Sbjct: 66 LLLNKMPQVHSQITRLQNMLCDSEGEITGILRITSVLTYSK-ILNPALRAFIKQHPKLRI 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+ + + + +IR+ K +I +KL + YA Y+ P S Sbjct: 125 ELVSTDDIVPLESGAVHVSIRIGKKPVDGDIIVKKLTDVEFAYYATEEYVAEHGSPSSSA 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 E +H F L ++ + I E + Q N++ + Q + G GI L Sbjct: 185 EFKQH----FWVLPSGGKRSIPFVKHITEHIPEENV-IYQSNNFPDVHQAVIDGFGIGPL 239 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 K +P+L +I + S +++F Y LK++ ++K F+ Sbjct: 240 DLQQAKQHPDLHKITAIDMPLSESLWFVYHRDLKHSNRVKTLYQFL 285 >gi|307728251|ref|YP_003905475.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307582786|gb|ADN56184.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 315 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 145/290 (50%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF AAE++ +S + S+ + LE ++G +L R R + TE G + + Sbjct: 7 MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S+V +LE + + +SV P G+LR+++ G + + + ++ YP + + + Sbjct: 67 ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D AIR ++SSSLI R + H+ A+P YL+ P + +L Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARPIAMAHLVLCASPAYLRRRGIPKTAADL 186 Query: 187 DKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 +HN + + + M+ A V R+S + ++L + VL G+GIALL Sbjct: 187 ARHNFLQYAGVSALDVMQSTGEAARV-------RLSGNLIVNHLEAQRVMVLHGAGIALL 239 Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + LV ++ D + P ++ Y + K+++F +F+ Sbjct: 240 GTEVIGADLAEGRLVPLLVDEMPPRELPIHVVYASRRHLSAKVRSFVDFL 289 >gi|39937805|ref|NP_950081.1| LysR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651665|emb|CAE30187.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris CGA009] Length = 304 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 5/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++R F +A GS + A L++ QS+++RQ+ LE VG L R R +TLTE+GS+ Sbjct: 9 ERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAVGAPLLSRTTRRVTLTEEGSR 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ LE E +S P+G +RI+ T G + F YPDI I Sbjct: 69 YYARCVQILRLLEQAGDEALGASGTPAGTIRISCTASFGVLHASRLIFAFQDRYPDIGID 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D AIRL P+ SSL R L H A+P YL +P S Q+ Sbjct: 129 FGLTDQRVDLVREGVDLAIRL-APLTDSSLKLRTLGHSHRLLVASPDYLAAHGKPTSPQD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + ++ D L D+ I P L+V+ L+ + + G GIA Sbjct: 188 LSNHQGVR---MVNVAGSDLLVLQGPDQEIHRVPFGGRLRVDHGLAAREAMIAGRGIAAT 244 Query: 245 PDYIVKD 251 ++V D Sbjct: 245 HRWLVDD 251 >gi|86136547|ref|ZP_01055126.1| probable transcriptional regulator [Roseobacter sp. MED193] gi|85827421|gb|EAQ47617.1| probable transcriptional regulator [Roseobacter sp. MED193] Length = 291 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 35/306 (11%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR + A++ GSF AA+ L LS S +S I+ LE +G+ L YR R L+LT Sbjct: 3 DHLRQVAIFAKTVDHGSFRAAAQALRLSPSVVSHHITQLEHHLGVALLYRSTRRLSLTRD 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + ET + + + +PSG+L+I L Q+ + + +F YP + Sbjct: 63 GERLIGSARAMLEAAETGLQAVSDQAAQPSGELQITIPAALAQSHVVDRIAQFTATYPAV 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + ++ D D A+R+ ++ SSL RKL + + AA Y+ +P S Sbjct: 123 RLTLDFSDLRREVIADGIDVALRM-GWLEDSSLKARKLFDVQRYLIAAQSYVDQRSKPES 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISC-----LQVNSYLS 230 P ++D++W L T R G+ I+ L VN + Sbjct: 182 ----------------PNDLQDWDWLTLAQVGLTTEFRTEGKHVITLKPNPRLSVNDAHA 225 Query: 231 IMQYCVLGSGIALLPDYIVKDN--PNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + G+G+AL+P+Y+ ++ LV R++ D S VY +P G F Sbjct: 226 LYHLARSGAGLALVPEYLTHEDIAAGLVRRVLPDWNVASVGVYAVWPPNAPKEGLSALFI 285 Query: 288 NFIFLK 293 NF+ K Sbjct: 286 NFLAKK 291 >gi|103486055|ref|YP_615616.1| LysR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976132|gb|ABF52283.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis RB2256] Length = 311 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ F VA GSFT AA L LS++++S+ ++ LET +GI L +R +R + ++ G Sbjct: 5 DYEGWACFVAVADGGSFTAAAAALGLSKATVSKAVTRLETSLGITLLHRSSRVVAVSTAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + + +G +R+A + G +L L FL +P ++ Sbjct: 65 AGLLDEARAMVAAATAATEAARGDRLDLAGPIRLAAPMSFGIKVLGPVLAAFLDRHPAVE 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+L + D + D +R+ P+ SSL+ R + + A+P YL+ P Sbjct: 125 IDLLLSDARNDPIAEGIDLTLRI-APLADSSLLARTIAPVAASLIASPAYLEKHGTPRHP 183 Query: 184 QELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H LI +G +P ATV P G L N+ ++ V GSG Sbjct: 184 LDLARHRLIGYGHRQRAMPLHFSREGEEATV-LPTGP-----LFANNGDVMVPMIVAGSG 237 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA+LPD+I + +V I+ D P ++ P + +++AF + + Sbjct: 238 IAVLPDFIAAEELAAGTVVPILTDWSLPQSYLHLLSPPSRLRPARVRAFSDHL 290 >gi|222109397|ref|YP_002551661.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221728841|gb|ACM31661.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 305 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 8/274 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D++ +F VA SFT AAE L + ++S S + LET++G +L +R R + LT+ G Sbjct: 4 FDRMHIFARVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ ++ Q Q G++RI + + +N++ L E L +P ++ Sbjct: 64 AYYERCKDLLADVDELQSMFQHPDGAGLKGRVRIDMSTGMARNVVVPRLPELLARHPGLK 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L + +D+ + DC +R + SSL+ R L + + A+P YL+ P S+ Sbjct: 124 VELSSTERRVDVVREGFDCVLRT-GAVVDSSLVARPLGLVRLVNCASPAYLRAHGTPRSL 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H L+ F + + F A VD + P L VN+ + M C+ G G+ Sbjct: 183 ADLPGHRLVHFVNTLGARSAGFE--AVVDGALVLTPMQGALTVNNAEAYMAGCLAGLGLI 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P V D +LV ++ + P + Y Sbjct: 241 QVPHLGVVDLLARGDLVEVLPQLAAPPMPLTLMY 274 >gi|149910810|ref|ZP_01899444.1| transcriptional regulator, LysR family [Moritella sp. PE36] gi|149806144|gb|EDM66124.1| transcriptional regulator, LysR family [Moritella sp. PE36] Length = 311 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 10/294 (3%) Query: 1 MSFDWDKLRVFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 +SF+ K V Y + G+ + AA L+LS++ +S + LET++G+KL R R TL Sbjct: 13 VSFEQLKSMVVYAQIVEQGTLSAAARHLNLSRAVVSYHLKKLETQLGLKLLNRTTRSFTL 72 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 TE G + ++ E+ H+ E +++ +P G L+I +++G ++ L F + + Sbjct: 73 TEAGQQYYQHCQEIAHQAEAANQQIENLKHEPEGLLKITCPVNVGLQIIVPALNMFKIQF 132 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P I++ +IL + ++I + D AIR P+ S L KL+++ A+P YL Sbjct: 133 PKIELDIILTDDIVNIMQEGIDLAIR-GAPLVDSGLQALKLISMKTCLCASPDYLNKYGR 191 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P+S EL++HN + + A RP G + N+ + + G Sbjct: 192 PVSPTELNEHNWVLYKLSSSTLTLSKGTRAYSVRPKG-----SINTNNAAARTAFVEGGH 246 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA +P Y + L +++ D + +Y +P + K + +F+ Sbjct: 247 GIARIPLYDAAPKIASHKLEQLLSDYELSNIELYGVFPPGSAGSKKHRVLLSFL 300 >gi|146340987|ref|YP_001206035.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193793|emb|CAL77810.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 299 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 11/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+ F V +GSFT AA L L Q +I+++I+ LE + G +LF R R L T + + Sbjct: 5 DALQTFIRVMEAGSFTQAAADLGLGQPAITKRIALLEEQFGCRLFVRTTRKLRPTPEADR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ E+ + PSG LR+ G+ E+ YPD+++ Sbjct: 65 VLKLAKDIVTLFESAGVPSPRRVGAPSGTLRMTVPTSFGRYFFADIFAEYGRRYPDVRLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +D+ + AIR+ + SSSL+ R++ T+ AAP L R P + Sbjct: 125 IRFTEQVVDLVETGTELAIRI-GVLSSSSLVARRVGTVKRLLAAAPSLLARHRPPRLPND 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVL-GSGIAL 243 L + +T+ L PK F T +G P ++C + IM L G G A+ Sbjct: 184 LRQLPCVTYSRLSPKNEWSFE-SETGRHVVGITPTLTCDDAD----IMTLAALEGLGAAV 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 LPD+ + + L+ ++ D PS ++ YP+ + + + FR+ I +A Sbjct: 239 LPDWCAVEHIASGRLIHLLPDYDVPSLPLHVVYPDPQWTSHRARLFRDLIIERA 292 >gi|307309017|ref|ZP_07588697.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306900490|gb|EFN31104.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 295 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 11/272 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA SFT AA +L SQSS+S I LE +G++L R R + TE G +L Sbjct: 9 LLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAGEQLF 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E L E KP+G RI +L L FLL YPDI+++L+ Sbjct: 69 STLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIKVELV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ DI + D +RL ++ + R M AP L++ P + QEL Sbjct: 129 AESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPPPKTPQELT 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H I +P + W +R E R+ + N I++ + G G+ + Sbjct: 189 THRCINL--RLPSYGGFYAW--EFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLTYV 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + +V++ N LV++++D TP F Y Y Sbjct: 245 HEDVVREYLKNGRLVQVLDD-WTPPFPGYHLY 275 >gi|293602121|ref|ZP_06684573.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553] gi|292819457|gb|EFF78486.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553] Length = 311 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 139/284 (48%), Gaps = 26/284 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + D LRVF V +GS + AAE L + S +SR +S LE ++G+ L R R + LT Sbjct: 19 MALNSDALRVFLGVVDAGSLSAAAELLGQTASGVSRALSRLEEDLGVILLNRTTRRMELT 78 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G+ ++ LE + ++ +P+G+LR+ ++ + + + ++ +F YP Sbjct: 79 EEGAHFLPKARQIIASLEEAEECMRMVHQRPAGRLRVDASVPVMLHCVVPHVGDFRREYP 138 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I ++L +++ +D+ D AIR+ P+ S+L R L A+P Y+ P Sbjct: 139 EITLELTSNDRIVDLMEHRTDIAIRM-GPLTDSTLHARALRPSPRWMMASPDYIARRGAP 197 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQ 233 ++++L +H ++ F E N W P+ S Q L+ Q Sbjct: 198 ETVEDLAQHEVLGFTQ-----PESLNLW------PLKHAGGSSFQATPTLATSSGETQRQ 246 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDV----ITPSFTVY 270 + G GIA L D++V+++ LV++M+ V + P VY Sbjct: 247 LALRGVGIACLSDFVVREDIAAGRLVKVMQGVYSDHLQPMHAVY 290 >gi|260549391|ref|ZP_05823610.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407500|gb|EEX00974.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 305 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 15/224 (6%) Query: 1 MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS +D L +F +VA S + AA L + S +SR I+ LE ++GI+LF R R L Sbjct: 1 MSRQFDHLADVEIFLIVAEKLSISTAAIDLSTTPSVVSRTITRLEKKLGIQLFRRTTRHL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LTE G + + ++ + +Q ++ SGK++I+ G L L++FLL Sbjct: 61 SLTEAGQLYYEKMQHAFQLIDHAERLVQGEQLQISGKIKISVPTTYGHYRLPPLLEKFLL 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPDIQI++ + N+++D+ + D AIR + + +S+LI R L + A+P YLK Sbjct: 121 QYPDIQIEVSISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEHAPLKLVASPAYLKRM 179 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCMEDFN------WLAT 210 P ++ EL+ H I F G + P +D + W+ T Sbjct: 180 GIPKNLDELNHHQCIAFELPSNGKVTPWFFKDIDIDQEIQWIPT 223 >gi|90423721|ref|YP_532091.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105735|gb|ABD87772.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 298 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 139/300 (46%), Gaps = 14/300 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA F AA +L LS S+++R ++ LE VG +L R R +TLT+ G++ Sbjct: 5 DAMTAFVAVADLQGFAPAACKLGLSPSAVTRLVAALEERVGARLLQRTTRSVTLTDVGAR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E + Q +P+G+L ++ + G+ + + +L YP++ + Sbjct: 65 YLERARRILADVEEAEGSAQAERTQPAGRLVVSAPVGFGRLHVTPLISAWLKRYPEVAGE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +++ D DCAIR+ + + SSL+ R + + A+P YL P + Sbjct: 125 LRLTDRVVNLVEDGVDCAIRIGQ-LPDSSLVARAVGDMRRIVVASPDYLAARGVPKTPAA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L KH+ I FG L D+ + R I R++C N + + + G G+ Sbjct: 184 LAKHDTIQFGAL--AAAPDWRF-QDAGREI---RVACTPRFTTNVADAAIWHAEQGGGLT 237 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + Y + R ++ P ++ YP + + K+++F + + A DW+F Sbjct: 238 RVLAYQAAEGLAAGRLKVVLRKFEPPPLPIHIVYPTSRLLSAKVRSFIDLLIETA-DWRF 296 >gi|15597628|ref|NP_251122.1| bistable expression regulator, BexR [Pseudomonas aeruginosa PAO1] gi|107101883|ref|ZP_01365801.1| hypothetical protein PaerPA_01002928 [Pseudomonas aeruginosa PACS2] gi|218891586|ref|YP_002440453.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235443|ref|ZP_04928766.1| hypothetical protein PACG_01352 [Pseudomonas aeruginosa C3719] gi|254240869|ref|ZP_04934191.1| hypothetical protein PA2G_01543 [Pseudomonas aeruginosa 2192] gi|296389157|ref|ZP_06878632.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110653|ref|ZP_07796523.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9948478|gb|AAG05820.1|AE004670_8 bistable expression regulator, BexR [Pseudomonas aeruginosa PAO1] gi|126167374|gb|EAZ52885.1| hypothetical protein PACG_01352 [Pseudomonas aeruginosa C3719] gi|126194247|gb|EAZ58310.1| hypothetical protein PA2G_01543 [Pseudomonas aeruginosa 2192] gi|218771812|emb|CAW27589.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310883025|gb|EFQ41619.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 304 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 28/301 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS +D + F VA S T AAE++ LS+S IS+++S LE +G++L YR R + T Sbjct: 1 MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLERRLGVRLLYRTTRNVEPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E G ++ +L + L+E+ + G+LRI T + G L + +F+ Sbjct: 61 EAGHFFYKAAKASLQELNNAAEIVALRENDL--CGELRIVTPMSFGTLWLSPIIADFMSQ 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P ++I L +D++ D + D +IR+ + + SSLI R L +P Y + Sbjct: 119 HPRLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAERHG 177 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQY 234 ++++L +H + + + P + W P +PR N+ ++ Sbjct: 178 TLDTLEQLMQHECLGYNNATPSQV----WTFEPAFPGAKPRAVSPRGRFSSNNGQAMRDA 233 Query: 235 CVLGSGIALLPDYIVKD---NPNLV------RIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + G G+ALLP +IV + N LV R ++DVI Y Y A + K+KA Sbjct: 234 ALRGQGLALLPLFIVAEDLKNGRLVDAAPGLRPLDDVI------YAMYSRAAAMSPKVKA 287 Query: 286 F 286 F Sbjct: 288 F 288 >gi|289650318|ref|ZP_06481661.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 302 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H+ + +G W V G+P I ++ N+ + V G G Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP +IV + +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|21232109|ref|NP_638026.1| LysR family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21113856|gb|AAM41950.1| transcriptional regulator lysR family [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 304 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF VAR GSFT AA QL +SQS++S + LET +GI+L R R +++TE G + Sbjct: 12 NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMR 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L KP+G +RI T L L + L YPD++++ Sbjct: 72 LFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVE 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D DI + D +RL + + M AAP Y + P E Sbjct: 132 ITVDYGLADIVAERYDIGVRLGDQVAKDMIAVPISPRQRMAVVAAPSYFVHHTIPAVPAE 191 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN I T G L+P E V R G+ N ++++ + G+G Sbjct: 192 LAQHNCIGLRLPTHGGLLPWDFEKDGREQKV-RVDGQ-----WTFNGSSAMLRAALAGAG 245 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +A LP+ +V D+ L R+++D P Y YP +++ LK Sbjct: 246 LAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALK 292 >gi|218515778|ref|ZP_03512618.1| probable transcriptional regulator protein, LysR family [Rhizobium etli 8C-3] Length = 225 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 104/193 (53%), Gaps = 1/193 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V +GSFT AA L + ++++SR+I+ LE E+G++L R R L+ T+ Sbjct: 2 LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSATDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +S+ +E + L E+ +P+G +RI+ + G + LQ + + L YP Sbjct: 62 GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLSTYPKS 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L + +++ + D A R ++ S+LI RKL + H A+P YL P Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180 Query: 183 IQELDKHNLITFG 195 +L +H+ + G Sbjct: 181 PADLVRHDCVVAG 193 >gi|194292454|ref|YP_002008361.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG 19424] gi|193226358|emb|CAQ72307.1| putative transcriptional regulator, LysR [Cupriavidus taiwanensis LMG 19424] Length = 312 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 22/286 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V +GS + AA +L+LS+S +S ++ LE +G L R R L LT++G+ Sbjct: 10 FVTVVEAGSISEAARRLNLSKSVVSDRLVELERGLGATLLRRTTRKLLLTDEGNAFLDRA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + ++E ++ E + +G LRI+ + G+ L L FL +P++++ L LD+ Sbjct: 70 TRIMREVEEASTDVAERRGRLAGPLRISAPVTFGRMHLGPALYPFLAKHPELELTLDLDD 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D + D D +R P++ S L+ +L A+P YL + P S ++L H Sbjct: 130 RRVDAAADGYDAVVR-HGPLEDSRLVAWQLAPSRRLLVASPAYLDHRGTPASPEQLRHHR 188 Query: 191 LITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 I + + + D+ + V PI L+VN+ + G GIALLP Sbjct: 189 GIFY---LNRGAADWRLQGKDGTEIVRAPI------ALRVNNGDMMRDAAEAGLGIALLP 239 Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAF 286 +I P++ R V+ ++Y +P+ + +L+AF Sbjct: 240 TFIA--GPSIRRGTLAVVDIGLQAIPESIYIAHPDGRRAPARLRAF 283 >gi|171320289|ref|ZP_02909343.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171094465|gb|EDT39525.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 299 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR +F AA++L ++Q ++++Q+ LE V ++LF R RGL LT +G + Sbjct: 14 NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVEVQLFRRLPRGLALTREGLE 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S V L+ +P+ L ++TT L L +F L+PDI+++ Sbjct: 74 YF---SSVQRALQIISDATDALGERPT-VLAVSTTPSFASKWLIPRLSDFGRLHPDIEVR 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIRL KP + L L + + A A+P L + + Sbjct: 130 VIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDVFAVASPTLLDGGPPIRTPAD 189 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P+ +E D P PR S S L+I V G GIAL Sbjct: 190 LSTHALLHDAHDLWPEFIEKLGGKGQAD-PTKGPRFS----QSLLAI-DAAVAGQGIALT 243 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + +V+ + L R+ + S Y +P+A ++ L+A R ++F + Sbjct: 244 SEPLVERDIAEGWLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLFAQ 295 >gi|288934538|ref|YP_003438597.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288889247|gb|ADC57565.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 306 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE + +KL +R R L +T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQ Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC +R + I SLI R + + + Y AP Y++ P + Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-ITDQSLIARHVGDLQIGVYVAPRYVERLGAPAHPR 182 Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H ++ F P D L + I L V+ + ++ + G G+ Sbjct: 183 ELQNTDHRIVGFVS-SPSRKIDPLVLRSESEQIEITGNYVLAVDDGNAYLEAGLAGLGVI 241 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290 LP Y+ + + + P FT ++ +P GKL+ F ++I Sbjct: 242 ALPIYMAAAHQAV-----GALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWI 292 >gi|229528055|ref|ZP_04417446.1| transcriptional regulator [Vibrio cholerae 12129(1)] gi|229334417|gb|EEN99902.1| transcriptional regulator [Vibrio cholerae 12129(1)] gi|327486018|gb|AEA80424.1| Transcriptional regulator [Vibrio cholerae LMA3894-4] Length = 301 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + + T++ P+ LQ + +++ + +GI +P Sbjct: 190 TDHRCLT-GSVKRWSYQHKETKQTLEVPVDGD----LQCKNGRVLVRSALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVDFSLIYHKDKYQPVRLKRFIEF 290 >gi|260753021|ref|YP_003225914.1| LysR family transcriptional regulator [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552384|gb|ACV75330.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 355 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 18/296 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F VA S SF+ AA L LS+ ++S+ IS LE +G L +R +R L+LTE G Sbjct: 6 DFEAWAIFAKVAESNSFSKAALALGLSKGTVSKAISRLEERMGTSLLHRTSRHLSLTESG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + E+ E + P G +RIA+ I G L L EFL YP + Sbjct: 66 RVALTRATHLLEEGEAIEAEVSEDANNPYGVVRIASPISFGIQALGPILPEFLAEYPRVG 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D A+R+ + SSL R+L +I A+ YL P Sbjct: 126 IDLHLSDSRVDVIAEGFDIALRMGD-LPDSSLRARRLFSIRRPVVASRAYLDRHGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238 +EL +H +I + + + F+ P E R+ + V++ M + G Sbjct: 185 RELSQHEVIIYSHIEHPHIWRFS------HP-EEGRVEVKVDGRVHVDNGDVAMGPLLSG 237 Query: 239 SGIALLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA P++ + +D L + + P + ++ P +++A F+ Sbjct: 238 IGIACQPEFFIWQALRDG-VLEELFPEWTIPPYGMFLLTPPGRARPARVRALLGFL 292 >gi|296136480|ref|YP_003643722.1| transcriptional regulator, LysR family [Thiomonas intermedia K12] gi|295796602|gb|ADG31392.1| transcriptional regulator, LysR family [Thiomonas intermedia K12] Length = 301 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 11/291 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD +R+ +V R+ S T AA QL +S S++ R+I+ LE +G+ LF RHA G LTE Sbjct: 4 NLNWDDVRLLLLVVRTHSLTAAAVQLGVSPSTVGRRIALLEGALGVTLFVRHASGYRLTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ L V + Q ++ P G +R+AT L LL YP Sbjct: 64 DGASLLEDARRVEDAIVQLQGRAADAGSTPRGHVRLATNEALANLLLLPRWAALAPRYPQ 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L+ D+ AD A+RL +P ++ L RKL YAA L R+P Sbjct: 124 LVLELVTGAAIQDLYRRDADLALRLVRP-EAGGLTVRKLGVQAYAVYAAKGLLPQARKP- 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L K I + I ++ W PI L NS + + V G Sbjct: 182 GKAGLAKLPWIGWDPSIQHLVQ-ARWQREQFAHAPI------TLTANSLFTQLHAAVQGL 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A+LP YI +P L+R + S ++ + L++ +++ + + Sbjct: 235 GLAVLPCYIADPHPQLMRCLSPTQCVSQEIWLVIQQGLRDAPRVRVIADMM 285 >gi|260775841|ref|ZP_05884737.1| probable transcriptional regulator protein LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260608257|gb|EEX34426.1| probable transcriptional regulator protein LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 298 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 146/292 (50%), Gaps = 18/292 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++VF V +GSF A++ L + +++SR++ LE +G+KL +R R L+LTE+G Sbjct: 4 NDIKVFISVVEAGSFAGASQFLAMPSTTVSRKVVQLEENLGVKLLHRSTRKLSLTEEGRH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + LE ++++ +P GK+RI++ D +Q + EFL YP+I I+ Sbjct: 64 YFQLCQQHLVALEEANDLVRQAQSEPKGKIRISSPFDFAVQYVQPWITEFLKAYPEISIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLS 182 L + +++ + D A R + +Q SSLI R++ H A+P +LK N + P Sbjct: 124 LDTSDSYVNMVENRIDVAFRSGQ-LQDSSLIARRIGPKHSVCCASPDFLKAAGNIKHPED 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSGI 241 + +D L+ + + + W T +S ++ + I++ + G G Sbjct: 183 LANVD-------CLLMSQSLSNNQWHFTKQEQHYPINVSGKYASTSMHLIIESALNGLGA 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A +P +VK ++ LV++++D TP ++ Y T KA R FI Sbjct: 236 AYVPFALVKTHLESGQLVQVLQDYETPKSNMFVIYQSHKYMT---KAIRLFI 284 >gi|126736766|ref|ZP_01752504.1| transcriptional regulator, LysR family, putative [Roseobacter sp. CCS2] gi|126713737|gb|EBA10610.1| transcriptional regulator, LysR family, putative [Roseobacter sp. CCS2] Length = 301 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 7/257 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F V GS + AA + +S + S +IS LE +G++LF R R LT TEQG Sbjct: 5 DNIQTFVRVYELGSMSAAARDMRISAAVTSARISQLEQHLGVRLFQRTTRSLTATEQGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V + + + ++ + + P G L +A + +G+ L+ ++ EFL LYPDI ++ Sbjct: 65 FYGGACDVLEAVASAETQIVDITDNPKGSLYVAAPLGVGRRLIAPHVPEFLRLYPDINMR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A L +P + S+L RK+ + A+P Y++ P Sbjct: 125 LRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVQRILCASPAYIRTKGNPADGDA 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 L D H I +L + +F W R++ + + + + + G+GI Sbjct: 184 LIADNHECI---NLRYPGVAEFQWRLMTGEGAKRFRVTGRFESDDGDVLTDWALSGNGIV 240 Query: 243 LLPDYIVKDNPNLVRIM 259 + P + V D+ R++ Sbjct: 241 MKPLFEVSDHIKAGRLV 257 >gi|157371963|ref|YP_001479952.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323727|gb|ABV42824.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 297 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 25/293 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V SFT AA+ L L +S+++ I LE + ++L R R ++ T G Sbjct: 5 DAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLQVRLLQRTTRHVSPTLDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +E E+ + KP G LRI L ++ L L +FL YPDI++ Sbjct: 65 YYQRCLTILADIEDA--EMAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQYPDIELF 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D + DC IR+ K ++ S ++ R+L + AAP YL+ PL I E Sbjct: 123 MSEGDRLVDPVREGIDCVIRVGK-LKDSDMVARRLGELEEVTCAAPDYLQRFGTPLGIDE 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPR---ISC-LQVNSYLSIMQYCV 236 L+ H ++ F G ++P +FN G P+ + C + V++ S++ Sbjct: 182 LEGHRMVGFRSSASGSIMPL---EFNV-------AGRPQQLILPCTVSVSAAESLVAAAR 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +G GI +P Y ++D+ +L+ ++ + V YP + + + +++ F Sbjct: 232 MGLGIIQVPRYHLRDDLASGSLLPLLPQFPSTPMPVSLLYPRSRQLSPRVRVF 284 >gi|332991540|gb|AEF01595.1| LysR family transcriptional regulator [Alteromonas sp. SN2] Length = 299 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 14/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +++F VA + + + A + LS + S +S LE +G++L +R R ++LT++G + Sbjct: 5 DYVKLFTRVAATQNISKAGAEFGLSSAVASAHLSKLEESLGVRLIHRTTRKVSLTDEGEE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V + + KPSGKLRI + L L EF+ ++PD+ ++ Sbjct: 65 FLPKARDVLVSADIA-VSSVRGGAKPSGKLRITAPVSFSHIHLIPALNEFMGIFPDLSVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +DI D AIR ++ S+LI RKL + A+P YL+ P + + Sbjct: 124 LRLSDTIVDIVEGGFDIAIR-NAELKDSALIARKLAIDNRIICASPEYLEKHGRPATPEA 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L KHN I + + NWL + + + ++ ++ CV G GI + Sbjct: 183 LPKHNCINL-------IGNDNWLFRTSKGLLNIKTRGAFTTDNGKAVCDACVNGMGIVMC 235 Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 +I ++ LV+I+ED + +++ YP + K++AF ++ Sbjct: 236 STWIAYEHLRAGTLVQILEDYPLEADASIWAVYPSSKLVAPKVRAFIDY 284 >gi|224825559|ref|ZP_03698664.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224602480|gb|EEG08658.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 300 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GS +HAA+ L +S++ +SR ++ LE G +L +R R L+LT GS++ Sbjct: 7 MRVFVEVAERGSLSHAADSLDMSRAMVSRYLAELEEWAGARLLHRTTRKLSLTSAGSEML 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + Q + P G LR+ ++ LGQ+ L + +++ YP + + Sbjct: 67 PRCRQMLALEDEMQAAVTTPEAAPRGILRLTCSVWLGQSYLARAVADYVKRYPATAVDMQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +++ + D AIR+ + +LI RKL A+P YL+ P ++L Sbjct: 127 LLNRSVNLVEEGIDLAIRITNDLD-PNLIARKLGLCRSVVCASPAYLREHGTPQRAEQLA 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 HN +T FG + W + D +P+ P + N ++++ G GI + Sbjct: 186 LHNCLTYSYFGKSL--------WAFSRDGQPVSVPVGGNVSANETAALLEAARQGVGITM 237 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P D LV +++D +Y Y L+ +F+ Sbjct: 238 QPLQAAAPWLDTGELVAVLDDYRPRDLGIYAVYASRRHMPATLRTMLDFL 287 >gi|330965213|gb|EGH65473.1| LysR protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 306 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 17/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V +GSFT AA LH+S++S+++ + LE + ++L R R + +T G+ + Sbjct: 1 MQAFARVVETGSFTKAAGTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAVYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + L ++ P G+LR+ L LL + F YPDIQI + Sbjct: 61 ERVVRLLAEMDDAETSLSGAASLPRGRLRVDVPSPLASMLLMPAMPAFHARYPDIQIDMG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC +R + I SL+ R + + + Y AP YL+ P +L+ Sbjct: 121 VSDRIVDLIGENVDCVVRGGE-ITDQSLMARHVGDLQLGVYVAPGYLQRMGTPAHPHDLE 179 Query: 188 K--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 H ++ + G +P M V G ++ N+Y++ + G G Sbjct: 180 NSSHRIVGYLWARTGKALPYAMHRDGEQVRVQ---GLYTLTVDDGNAYIAA---GLAGMG 233 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I LPDY+ + +LV + +D S +Y +P + K++ F +++ Sbjct: 234 ILWLPDYMARPYLARGDLVPLFQDWQLDSMPMYVAFPPNRHVSIKVRVFIDWVI 287 >gi|326325971|ref|YP_004250780.1| putative transcriptional regulator, LysR family [Vibrio nigripulchritudo] gi|323669022|emb|CBJ93064.1| Putative Transcriptional regulator, LysR family [Vibrio nigripulchritudo] Length = 296 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 27/301 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R V +GSFT A+E+L +S+S S+ ++ +E ++G+KLF R R L++ + G + Sbjct: 5 DGMRTVVAVVETGSFTAASERLGISKSLTSKYVNLVEVQLGVKLFLRTTRKLSVNQSGYE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V + + ++ +++ SG LRI + + +L + EF YPDIQI Sbjct: 65 YYLQAQQVLARFDQLHSQIHSANMSASGSLRITASQGFAEEMLSPMIPEFHTCYPDIQID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+ N+ +D+ D A R + + SS RK+V++ YAAP K C + + + + Sbjct: 125 IIVTNQKLDLVEHGIDIAFRAGQ-LDDSSFNYRKIVSLQSSVYAAPQLAKQCGDGMELTQ 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISCLQVNSYLSIMQYC 235 L C+ D N A P+ + L+ NS + Q Sbjct: 184 L-------------PCLIDNNLHANARWPVDHSFNQNNDRNLAVHAVLKSNSPRLLRQLT 230 Query: 236 VLGSGIALLPDYIVKD--NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292 + G + +PD I L++ ++ TP + ++ Y ++K F +F+ Sbjct: 231 LSAVGASYIPDIIAARYVKKGLLQKLDVGFTPLKYPLHALYRGGDWQPERVKVFLDFVTS 290 Query: 293 K 293 K Sbjct: 291 K 291 >gi|312882433|ref|ZP_07742174.1| Transcriptional regulator, LysR family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369833|gb|EFP97344.1| Transcriptional regulator, LysR family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 298 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 140/286 (48%), Gaps = 24/286 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + + V S SFT AA L +++S++SR+++ LE +G++L R R L LT + Sbjct: 1 MDLNAIHILVKVVESRSFTQAAIVLDMTKSTVSRKLADLEQALGVRLITRSTRSLVLTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ L + + E+ G L++ +++G +L + +FL YP++ Sbjct: 61 GEAFYHSCQQILELLNQAEATVSENQALVKGPLKVVLPVEVGHQVLGEYIHQFLKQYPEV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L N+++DI + D +++ + + SSL+ R L + A+P YLK + S Sbjct: 121 TMNLELTNREVDIIGEGIDLYVQIGELV-DSSLVSRHLTSSKRVLVASPEYLKKFGQIRS 179 Query: 183 IQELD-KHNLITFG---------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 ++L H +I D P+ E F T+D P L+VN+ + + Sbjct: 180 RKDLSPPHQMIDIENNAARLPKWDFQPESGESF----TLDLPCQ------LKVNTITACL 229 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + C+ G+A+LP+++ +++ L+ ++ + P V Y + Sbjct: 230 KSCLDSLGVAVLPEFVCREHFKTGRLIHLLPEYAMPEVDVSLVYAD 275 >gi|149922574|ref|ZP_01911004.1| transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] gi|149816601|gb|EDM76096.1| transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] Length = 314 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 137/300 (45%), Gaps = 34/300 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +ARSGS A ++L +S S+++R++ GLE + +LF R G TLTE Sbjct: 1 MDWDDLRHFLALARSGSVRAAGKRLRVSHSTVARRVEGLEARLRTRLFDRSRDGYTLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + +++ + EL + G I +LL L FL +P I Sbjct: 61 GRRMLARAEGIEGAVDSLERELVGQDERLEGTASITCCDHWIADLLVIGLGPFLAAHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++Q+ +D++ D+S AD AIR R + L+ +L I++ +Y + Sbjct: 121 ELQVAVDSRLFDLSKREADIAIRATARGETPAEHLLGVRLQPIYLASYVGAGH------- 173 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---------QVNSYLSI 231 ++ LD D WL D + ++ + +S+ + Sbjct: 174 --VERLDPEG------------PDARWLGFDDARVQRAMVATSAYPALPLWGRFSSFELM 219 Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290 ++ G G+A+LP Y+ P+LVR+ D ++ C+P+ L++ +L+A R I Sbjct: 220 VRATRQGLGLAMLPTYVGDRAPSLVRLAGDTPRHVGELWLVCHPD-LRDNARLRAIRAKI 278 >gi|121587818|ref|ZP_01677576.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|121547919|gb|EAX58002.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] Length = 309 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ +F V GSFT AAE L +++S +S QI+ LE + ++L R R ++LT +G Sbjct: 17 ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLTTEG 76 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + + E + + + SG +RI TTID+G LL L EF YP + Sbjct: 77 DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 136 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LD+ D+ D IR+ + + SSSL+ R + + YA+ YL+N +I Sbjct: 137 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 195 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L++H+ + L +P V + S NS L +M G G+ Sbjct: 196 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 253 Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ P+ LVR+ D S T+ YP +++ F +++ Sbjct: 254 SIASFLIDKLPDASLVRLFPDFYQVSTTMNILYPSRKNLPPRVRLFIDYL 303 >gi|59801814|ref|YP_208526.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA 1090] gi|194099271|ref|YP_002002365.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae NCCP11945] gi|239999542|ref|ZP_04719466.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|240014718|ref|ZP_04721631.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae DGI18] gi|240017166|ref|ZP_04723706.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae FA6140] gi|240081195|ref|ZP_04725738.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae FA19] gi|240113408|ref|ZP_04727898.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae MS11] gi|240116244|ref|ZP_04730306.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae PID18] gi|240118530|ref|ZP_04732592.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae PID1] gi|240124076|ref|ZP_04737032.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae PID332] gi|240126307|ref|ZP_04739193.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|240128741|ref|ZP_04741402.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|254494261|ref|ZP_05107432.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae 1291] gi|260439941|ref|ZP_05793757.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|268595356|ref|ZP_06129523.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268597305|ref|ZP_06131472.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268599479|ref|ZP_06133646.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601911|ref|ZP_06136078.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268604242|ref|ZP_06138409.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268682701|ref|ZP_06149563.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268684889|ref|ZP_06151751.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268687128|ref|ZP_06153990.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043220|ref|ZP_06568943.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293398545|ref|ZP_06642723.1| LysR family transcriptional regulator [Neisseria gonorrhoeae F62] gi|59718709|gb|AAW90114.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae FA 1090] gi|193934561|gb|ACF30385.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae NCCP11945] gi|226513301|gb|EEH62646.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae 1291] gi|268548745|gb|EEZ44163.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268551093|gb|EEZ46112.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268583610|gb|EEZ48286.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268586042|gb|EEZ50718.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268588373|gb|EEZ53049.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268622985|gb|EEZ55385.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268625173|gb|EEZ57573.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268627412|gb|EEZ59812.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291012826|gb|EFE04809.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291611016|gb|EFF40113.1| LysR family transcriptional regulator [Neisseria gonorrhoeae F62] gi|317164791|gb|ADV08332.1| LysR family transcriptional regulator [Neisseria gonorrhoeae TCDC-NG08107] Length = 303 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 12/269 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLEMANSAVSRIVKRLEEKLGVNLLNRTTRQLNLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L H A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVVASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S ++L H + F + P + N A +D +IS S I++ C+ Sbjct: 180 QSAEDLANHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSSC 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFT 268 GIA L D++V ++ I E + P F Sbjct: 235 GIACLSDFLVDND-----ITEGKLIPLFA 258 >gi|117921949|ref|YP_871141.1| transcriptional regulator [Shewanella sp. ANA-3] gi|117614281|gb|ABK49735.1| transcriptional regulator [Shewanella sp. ANA-3] Length = 300 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 19/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAE L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 MRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRSVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V ++ + + + G +RIAT + LGQ+ L + F+ L+P + IQL+ Sbjct: 67 QYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQLL 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI RKL++I AAP YL EPL++ Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARKLMSIDAVLCAAPSYLAQA-EPLTV--- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 ++L++ LI + + L + +P + L N ++ + G GIA LP Sbjct: 181 -PNDLLSHNCLIHSSQQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLPC 238 Query: 247 YIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + NP L ++ + P T++ Y L + + R FI A+ W+ Sbjct: 239 DLA--NPYLASGQLQEVLPEYTAPGQTLWAVY---LSRSYQQALVRAFIDFTAQQWQ 290 >gi|300715483|ref|YP_003740286.1| transcriptional regulator, LysR-type [Erwinia billingiae Eb661] gi|299061319|emb|CAX58428.1| Transcriptional regulator, LysR-type [Erwinia billingiae Eb661] Length = 303 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 134/293 (45%), Gaps = 22/293 (7%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V +GSFT AA++L S S+ IS LE +G++LF R R L T+ G + Sbjct: 8 RMFIAVMETGSFTAAAQRLGTSHGQASKLISRLEQHLGVQLFRRSTRALAATDVGRAYYE 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + ++ SS P+GK+RI+ + G L +L +F YP I++ + Sbjct: 68 KIRVLLADYDALNDSVRNSSDAPAGKVRISAPVTFGTTQLTPHLIDFARRYPGIELDVSF 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +++ + D A+R+ K + SSL+ RKL I + A+P YL P + L Sbjct: 128 ADRAVNVVDEGFDLALRIGK-LADSSLMARKLCDIRIITVASPGYLAERGTPEHWEALAS 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI--------GEPRISCLQVNSYLSIMQYCVLGSG 240 H+ C+ D N+ P G+P L+ ++ ++ + G G Sbjct: 187 HD----------CIIDTNFRDPWRWPFQDEKLALQGQPVNGRLKFSNAEVCLKAAIAGLG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LP ++ + N +V ++ ++ YP A K + F +++ Sbjct: 237 IARLPSFVAGEALKNKEVVPVLAASEIVPLGLFALYPPAKYLAHKSRTFIDYL 289 >gi|21229763|ref|NP_635680.1| LysR family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766639|ref|YP_241401.1| LysR family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21111254|gb|AAM39604.1| transcriptional regulator lysR family [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571971|gb|AAY47381.1| transcriptional regulator lysR family [Xanthomonas campestris pv. campestris str. 8004] Length = 297 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 13/249 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L + R GSFT AA +L +SQS++S I GLE +G++L R R + TE G +L Sbjct: 9 LLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAGERLI 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++E L E P+G +RI T + +L L L YPDI+++L+ Sbjct: 69 QTVAPRFAEIEEALSALSEMRDTPAGSVRITATDYAAREILWPKLAVLLRQYPDIKVELV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +DN DI D D +RL ++ + R + M A+P YL+ P + Q+L Sbjct: 129 VDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMALIASPAYLERRPLPKTPQDLT 188 Query: 188 KH-----NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H + T G + + W L R I L NS + + G GI Sbjct: 189 AHLCINLRMTTAGGI-------YAWELEKDGREIAVRVEGQLTFNSIYEALDAALQGFGI 241 Query: 242 ALLPDYIVK 250 A + + + + Sbjct: 242 AFVQEDLAR 250 >gi|330968179|gb|EGH68439.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 302 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPTYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + +G W +P+ ++ N+ + + G GI Sbjct: 183 DLHSHECLPYGH-----SRHVQWRFQGAGKPVSLNVSGRMRANNGELLKDAALAGLGITY 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV D +LVR+++++ T+ YP+ + + ++AF F+ Sbjct: 238 LPTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|192293587|ref|YP_001994192.1| LysR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192287336|gb|ACF03717.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris TIE-1] Length = 304 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 5/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++R F +A GS + A L++ QS+++RQ+ LE VG L R R +TLTE+GS+ Sbjct: 9 ERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAVGAPLLSRTTRRVTLTEEGSR 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ LE E +S P+G +RI+ T G + F YPDI I Sbjct: 69 YYARCVQILRLLEQAGDEALGASGAPAGTIRISCTASFGVLHASRLIFAFQDRYPDIGID 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D AIRL P+ SSL R L H A+P YL P S Q+ Sbjct: 129 FGLTDQRVDLVREGVDLAIRL-APLADSSLKLRTLGHSHRLLVASPDYLAAHGRPTSPQD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + ++ D L D+ I P L+V+ L+ + + G GIA Sbjct: 188 LSNHQGVR---MVNVAGSDLLVLQGPDQEIHRVPFGGRLRVDHGLAAREAMIAGRGIAAT 244 Query: 245 PDYIVKD 251 ++V D Sbjct: 245 HRWLVAD 251 >gi|146305845|ref|YP_001186310.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145574046|gb|ABP83578.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 295 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 118/245 (48%), Gaps = 4/245 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V + GS AAE L +S S++S+QI LE G+ L +R R LTL+E G++ Sbjct: 6 RMALFATVVQKGSMVAAAEVLGMSASAVSQQIRRLEEATGVSLLHRTTRKLTLSEAGAQF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E + L E P G+LRIA + +L L L +P + ++L Sbjct: 66 YESCRQIVELAEQAEQRLAEQRDAPVGELRIAAPVGFSGPVLSEALAPLLSAHPALSLRL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ID+ D AIR+ + + SSL+ R + M AAP YL P Q+L Sbjct: 126 FFQDEQIDLIEQRIDLAIRVGQ-LDDSSLVARHVADWRMLVCAAPAYLARHVWPTQPQQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I + ++ R E RI+C N+ L+ Q+ + G G++L P+ Sbjct: 185 LDLDWIALNTERSQHLQLHGPGGATQRLRLESRIAC---NNILAARQFTLAGMGVSLQPE 241 Query: 247 YIVKD 251 +++ Sbjct: 242 PEIRE 246 >gi|71909445|ref|YP_287032.1| regulatory protein, LysR:LysR, substrate-binding [Dechloromonas aromatica RCB] gi|71849066|gb|AAZ48562.1| transcriptional regulator, LysR family [Dechloromonas aromatica RCB] Length = 295 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 135/293 (46%), Gaps = 19/293 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W LRVF +AR G+ AA SQ ++ R++ LE +G LF R G LT+ Sbjct: 11 AMEWSDLRVFLAIARVGTLGGAARLSGQSQPTMGRRLRALEAALGCALFQRTNDGFVLTD 70 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G L + Q +L G+LRI+ + G ++L + +F + Sbjct: 71 EGQSLLPHAEHMEEAALALQRKLAGQPGTLHGQLRISASDWFGAHVLSPLIADFRREHSG 130 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++LI D++ ++ AD A R+ KP + +IQRKL+ + YAAP YL Sbjct: 131 ISVELITDSRLYSLARREADVAFRI-KPFEEPDVIQRKLMHMEYALYAAP-YLP------ 182 Query: 182 SIQELDKH--NLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVL 237 + Q D +LIT D + D WL + + IG NS + C+ Sbjct: 183 APQAGDGKGCSLITM-DSAYAEIPDARWLRKLLPNSSIG------FASNSREAQATQCMS 235 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA+LP + P + ++ P VY Y + L++ G+L+ F +F+ Sbjct: 236 GGGIAVLPCLLGDRIPTIQKLDLGEKAPGRDVYLGYHKDLRHLGRLRVFLDFV 288 >gi|300703603|ref|YP_003745205.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299071266|emb|CBJ42584.1| putative transcriptional regulator, LysR family precursor [Ralstonia solanacearum CFBP2957] Length = 336 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 131/278 (47%), Gaps = 17/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF +G F AAE+L LS+S++ + I+ LET +G++LF+R R LTE G Sbjct: 10 DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + L+ + +G+LR+ + G+ + L +F +P ++++ Sbjct: 70 YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFARQHPKLELE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D IR +++ L R L T AAP YLK EP +I+ Sbjct: 130 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIET 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239 L H+++ + + WL P + R++ +++ S L V G Sbjct: 190 LATHDVLIHW----RTGHPYPWLL----PGADGRLTDVRLASRLRFDDLEVTADAAVAGM 241 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 GIA LP ++V+D LV + E+ S + +P Sbjct: 242 GIAWLPRWLVRDRIQAGALVALWENRPAASMDSHAIWP 279 >gi|229522580|ref|ZP_04411996.1| transcriptional regulator [Vibrio cholerae TM 11079-80] gi|229340565|gb|EEO05571.1| transcriptional regulator [Vibrio cholerae TM 11079-80] Length = 301 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M +P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLTSPTYFTLCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|21241076|ref|NP_640658.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21106372|gb|AAM35194.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv. citri str. 306] Length = 317 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 96/191 (50%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L + R GSFT AA +L +SQS++S I GLE +G++L R R + TE G Sbjct: 25 NFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAG 84 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + ++E L E P+G +RI T + +L L L YP+I+ Sbjct: 85 ERLIQTVAPRFAEIEEALSALGEMRNTPAGTVRITATDYAARAILWPKLSRLLRDYPEIK 144 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++++DN DI D D +RL ++ + R + M AAP YL+ P + Sbjct: 145 VEIVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLERRPIPKTP 204 Query: 184 QELDKHNLITF 194 Q+L H+ I Sbjct: 205 QDLTAHSCINL 215 >gi|322833016|ref|YP_004213043.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321168217|gb|ADW73916.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 295 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 13/287 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF A GSF AAE L +S +++ I+ LE+ +G L R R LT+ G Sbjct: 6 SMNVFVRTADLGSFAAAAEALRISPQMVAKHIARLESRLGTALINRTTRRQHLTDIGRSY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V + E E V PSG LR+ + G + L + +L YP+ QI+L Sbjct: 66 YERCKIVLSEAEAADAIALEMKVTPSGTLRVNAPVTFGTSSLAPFITHYLAQYPETQIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D + + +R+ + + S +I L + A A+P YL P + EL Sbjct: 126 TLSDRMVDPVEEGYEVILRIGE-LSDSQMIAYPLQPYRLIACASPGYLAQNGAPETPAEL 184 Query: 187 DKHNLITFGDLIPK--CMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + +G P+ C F + P G L+ N + +++ V G G+ Sbjct: 185 ATHSCLVYGIWSPQAPCRWQFYQEGRMQEIHPQGR-----LRSNDWRALLHAAVSGYGVT 239 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 L P+ ++++ N LV+++ D PS ++ P L+ T K+++F Sbjct: 240 LGPEDVLREEINAGRLVQVLPDYDGPSRPMHILTPAGLRQTVKIRSF 286 >gi|56551367|ref|YP_162206.1| LysR family transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761013|ref|ZP_04759102.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56542941|gb|AAV89095.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374632|gb|EER64093.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 319 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 18/296 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F VA S SF+ AA L LS+ ++S+ IS LE +G L +R +R L+LTE G Sbjct: 6 DFEAWAIFAKVAESNSFSKAALALGLSKGTVSKAISRLEERMGTSLLHRTSRHLSLTESG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + E+ E + P G +RIA+ I G L L EFL YP + Sbjct: 66 RVALTRATHLLEEGEAIEAEVSEDANNPYGVVRIASPISFGIQALGPILPEFLAEYPRVG 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ + D A+R+ + SSL R+L +I A+ YL P Sbjct: 126 IDLHLSDSRVDVIAEGFDIALRMGD-LPDSSLRARRLFSIRRPVVASRAYLDRHGRPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238 +EL +H +I + + + F+ E R+ + V++ M + G Sbjct: 185 RELSQHEVIIYSHIEHPHIWRFSHPE-------EGRVEVKVDGRVHVDNGDVAMGPLLSG 237 Query: 239 SGIALLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA P++ + +D L + + P + ++ P +++A F+ Sbjct: 238 IGIACQPEFFIWQALRDG-VLEELFPEWTIPPYGMFLLTPPGRARPARVRALLGFL 292 >gi|316932453|ref|YP_004107435.1| LysR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315600167|gb|ADU42702.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris DX-1] Length = 307 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F V SF AA +L LS++++S+ ++ LE +G +LF R +R L LT+ G Sbjct: 6 DFEALAIFAKVVELRSFAAAATELGLSKATVSKAVTRLENRLGARLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L +++ E + E S P G +R+A + G ++ L EFL YPD+ Sbjct: 66 HRLAERAAQLLADGEAAEAEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPEFLTAYPDVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D +R+ + SSL+ R+L + + A+ YL+ P Sbjct: 126 IDLHLSDAMVDLIGDGFDAGVRIAS-LPDSSLVARRLCAMPRYTVASKSYLQAHGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + + L P N RP G L+VN+ +++ + G G Sbjct: 185 MHLAQHRCLGYAYLSTPNTWHYSNDAGDQVAVRPGGP-----LRVNNGEALLPAVIAGLG 239 Query: 241 IALLPDYIVKD 251 IA LP++IV + Sbjct: 240 IADLPEFIVGE 250 >gi|308185557|ref|YP_003929688.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1] gi|308056067|gb|ADO08239.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1] Length = 305 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 8/250 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD L V+A GSFT AAE+L +S++++S++I LE G+ L R R + LT G Sbjct: 10 WDHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEQIAGVLLVQRTTRSVRLTSAGE 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 KL E + ++E + +++++ G +RI + + L + EFL YP +++ Sbjct: 70 KLVEELREPFARIEQSFFSVRDTAGPVRGLVRITAPVAFARQQLVPIIGEFLRDYPQLRL 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL + ++ + +S + D AIR + + + L A+P YL P + Q Sbjct: 130 QLDVTDRIVSLSSEGFDLAIRHSDTLPETH-VALPLCDTQTVLVASPAYLNQQGIPNTPQ 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 +L +HN + + P+ +E W + D + RI C N+ SI + G GI Sbjct: 189 DLMQHNCLYY----PRGVESPRWRFVTAADGEEVQVRIQGCFATNNSESIRDAALQGLGI 244 Query: 242 ALLPDYIVKD 251 A+LPD+ ++ Sbjct: 245 AMLPDFSARE 254 >gi|283833315|ref|ZP_06353056.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] gi|291070953|gb|EFE09062.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] Length = 297 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 132/290 (45%), Gaps = 18/290 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +VAR SFT AA +L +SQS++S I GLE + ++L R R + TE G Sbjct: 5 NFNDLYYLIIVARERSFTRAAAKLGVSQSALSHAIRGLEERLDVRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN----LKEFLLLY 119 +L S + +ET + L + + +G +R+ LG++ LQ L+ FL Y Sbjct: 65 ERLINSISPRFDDIETELLALTDVRQRVAGNIRLT----LGEHALQSTVWPALEPFLQAY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PD+ +++ LDN DI D IRL + + + R M +P Y + Sbjct: 121 PDVNVEMTLDNSLTDIVAGRYDAGIRLGEQVAKDMVAVRIGPDWRMVVVGSPAYFSRHGK 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236 PL+ +L KHN I +P + W + + RI L N+ + + Sbjct: 181 PLTPHDLQKHNCINL--RMPTLGGLYAW--EFSKRGQDLRIRVEGQLIFNNLPPRISAAI 236 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 G G+A +P+ V+ + L +++ED P Y YP ++T Sbjct: 237 AGIGLAFVPEDSVEQAVADGALEKVLEDWCEPFQGYYLYYPSRRQHTAAF 286 >gi|162449039|ref|YP_001611406.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159621|emb|CAN90926.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 312 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 13/252 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F V SFT AA +L +S+S +S +++ LE +G +L R R LT+T+ G Sbjct: 20 DLPALLCFARVVERRSFTAAAAELGVSKSMVSTRVARLEERLGERLLVRTTRKLTVTDAG 79 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L+ + V LE ++ +S G++R+ + Q L L FL P Sbjct: 80 MNLYARCARV---LEEAAAAVRGASDADRGRIRLNAPVSFAQMYLAEPLARFLRASPGAH 136 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+L+++ +D+ + D AIR+ K ++ SSL+ R+L T +H AP YL+ P Sbjct: 137 VELMLNDRLVDLVEERVDLAIRITK-LKDSSLVARQLATTALHVVGAPGYLERRGRPEQP 195 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H+ + + L + +++ + R P+ P L ++ ++ + V G G Sbjct: 196 GDLLRHDCLRYLHL--RVEDEWRFYGAGGRVSVPVSGP----LTASNGTALREAAVSGIG 249 Query: 241 IALLPDYIVKDN 252 +A+LP ++V ++ Sbjct: 250 LAVLPRFMVDED 261 >gi|152971520|ref|YP_001336629.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956369|gb|ABR78399.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 302 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 15/304 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF V SG+F AA LH+++S++ + I+ LE +G+ LF R R LT Sbjct: 1 MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + +R E ++ + LQ + G+LR++ + GQ + L YP Sbjct: 61 EEGEQFYRQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L ++ +++ + D A+R+ + SL R L M AA YL+ P Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237 +I L++H T G L ++ + D GE R S L + + +I Sbjct: 181 QTIAGLNEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQ 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA----LKNTGKLKAFRNFI 290 G GIA LPD++V + L +++ F ++ +PE K + A R + Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDALREGL 295 Query: 291 FLKA 294 L A Sbjct: 296 PLTA 299 >gi|28868993|ref|NP_791612.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213968678|ref|ZP_03396820.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|301384592|ref|ZP_07233010.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302061726|ref|ZP_07253267.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] gi|302131367|ref|ZP_07257357.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852233|gb|AAO55307.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213926611|gb|EEB60164.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 301 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + +G W +P+ ++ N+ + + G GI Sbjct: 183 DLHSHECLPYGH-----SRHVQWRFQGTGKPVSLNVSGRMRANNGELLKDAALAGLGITY 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV D +LVR+++++ T+ YP+ + + ++AF F+ Sbjct: 238 LPTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|146342446|ref|YP_001207494.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195252|emb|CAL79277.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 305 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L V VA SGS + AA L +S + +++ ++ LET +G KLF+R R LT+TE G + Sbjct: 8 LEVLSKVAGSGSLSGAARLLGMSPTMVTKHLAALETRLGTKLFHRTTRRLTITEAGRRYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V E + + V+P G LR+ + G + L F LYP + ++L Sbjct: 68 DLAERVLGDFEAAESAIAADRVEPRGVLRLNVPLAFGTRQIAPLLAGFAALYPGVSVELG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D AIR+ ++ S+L+ R+L M AAP YL P + +L Sbjct: 128 LNDRLVDLIEEGWDLAIRIGT-LKDSTLVARRLAPCRMMICAAPSYLTTHGTPRTTTDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + + W I L+ N+ +++ + G G+ P + Sbjct: 187 AHNCLGY---TLAAAGPSRWRMGGKAAIDVTVSGNLRANNGDALLAAALAGQGLIYQPTF 243 Query: 248 IVKD---NPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFI 290 IV D LV + DV PS V+ Y + K++AF +++ Sbjct: 244 IVGDELRTGRLVPVTLDV-PPSDLLAVHAVYLPDRTPSAKVRAFIDYL 290 >gi|330897630|gb|EGH29049.1| LysR family transcriptional regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 344 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 13/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A SF+ AAE+L + S++SR I LE ++GI LF R R L LTE G Sbjct: 49 LAAFVESANGNSFSKAAERLGIKASTVSRYIKDLEQDLGIALFNRSTRKLALTEGGQTFL 108 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +L + + P G+L+++ ++ + + EF+ YPDI + L Sbjct: 109 YHAQKVLFELSEAKAATSALNQNPRGRLKVSLPPAFARHHILPLVGEFIKRYPDITLDLC 168 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+ +D+ D AIR+ + + +S+L RKL + +P + +P +L Sbjct: 169 LEESQVDLIATGIDLAIRIGR-LANSNLKARKLAEVKTFLCVSPEFAARYSQPDCPDQL- 226 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +++ G P+ + N V P+G + L +N + + G G+ALLPD+ Sbjct: 227 PVDMMIIGRQCPEALIWANDNEQVSLPVG----AVLWINDLDAQLIAVSSGLGMALLPDW 282 Query: 248 IVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + + LVR + D S V+F YP + K++ F +FI + D Sbjct: 283 LASASLRDGRLVRWLPDWEIKTSQESGAVWFVYPPKRIVSSKVRCFIDFIAERVVD 338 >gi|325919259|ref|ZP_08181303.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325550264|gb|EGD21074.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 311 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 19/294 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AA+ L S +S++RQ++ LE +G +L R R ++LT G+ Sbjct: 5 DAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + +++P+G LR+ + G L L F YP +++ Sbjct: 65 YYQRCLQLLADLDDLEATVGAQALEPAGVLRVNAPVSYGIERLAALLPGFRARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P + +LI R+L + + AAP YL P Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APTLIARQLGKVRLLTCAAPAYLARAGTPSHPS 182 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H + + GD + D + + L+ N+ + V G Sbjct: 183 DLAGHECLLYHYSPNGDEVRFHGPDGDTTVRIH--------GGLRANNGHVLSAAAVAGQ 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+ PD++ D+ LVRI+ + ++ Y K+++F +++ Sbjct: 235 GIAMQPDFLADDHLAAGRLVRILPEYELADIGIFAVYTSRSHLAPKVRSFIDYL 288 >gi|270262476|ref|ZP_06190747.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043160|gb|EFA16253.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 300 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 133/283 (46%), Gaps = 5/283 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +LRVF VA GSF A+ L + ++++S I LE E+G +LF+R R + LT G L Sbjct: 6 RLRVFIQVAEVGSFIRASHILLMPKTTVSAAIQQLEHEMGARLFHRTTRKVQLTSDGELL 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + Q+ + G+L + + + ++ L +F L YPDIQ+ L Sbjct: 66 LEKARSLLFDVNVLDTLFQQKNGPIGGRLTVDVPSRIARRIIVPALPDFFLQYPDIQLFL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ID+ + DC +R+ + SSL+ + L + M A+P YL+ P +L Sbjct: 126 SASDRSIDLIQEGVDCVVRV-GSLSDSSLVSQPLGRLSMVNCASPDYLRRYGTPEHTDQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 D+H ++ + E + W + + + S + VN+ + + C+ G G+ P Sbjct: 185 DEHWVVGYAQPNLAGAETWQW-EQEGQSVEKTLRSRVTVNNAENYIGCCLAGLGMIQNPR 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + ++ D+ +L I+ + ++ YP + + + AF Sbjct: 244 FDLQHHLDDGSLREILPQARPSAMSIALLYPHRRQRSARFTAF 286 >gi|254249620|ref|ZP_04942940.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124876121|gb|EAY66111.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 359 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 11/296 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSF AA++L + +SS+SR + LE + +LF R R ++LT +G + Sbjct: 53 TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 112 Query: 70 TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 L +++E S PSG LR+ +T G+ ++ L++F YPDI + L+L Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 172 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ D S D D A R + ++ S+++ R+L+ + M A+P Y P + +L + Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 231 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247 H I + E W +D + + N +++ + G GIA LP Y Sbjct: 232 HRCINLCTASGRVTE---WEFRIDGVTQRRQFAAHHTFNDIDLVVRAALDGLGIAQLPAY 288 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298 V D + L+ + Y CY +++ F +++ +ARD + Sbjct: 289 QVCDLLADGRLLSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 344 >gi|293395490|ref|ZP_06639774.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422174|gb|EFE95419.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 310 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 10/291 (3%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL Y R GS + AA L LSQ ++S+QI LE ++G L +R R +T TE Sbjct: 2 DKLNAMYTFVRVVELGSLSAAARSLQLSQPAVSQQIVSLEQQLGTLLLFRTTRSVTATEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + + + L S + G LR+ GQ + F L+P++ Sbjct: 62 GQRYYQQIKPILAAVVEVEDALHGLSQRLQGNLRVHAPSGFGQAHIAPLAVAFQQLHPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L+LD++ D+S + D AIR + + + + R+L ++ AAP YL P S Sbjct: 122 RIELLLDDRLADVSAEGIDVAIRFGE-LHAPGTVARRLGSMQRMLVAAPRYLATQGTPQS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 QEL +H + F ++D L P + N+ +++ G GI Sbjct: 181 PQELSQHPHVRFSG---AAIDDTLTLIGPQGATLIPLRPVFRANNSFALLAALEGGLGIG 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ +LVR++E+ P ++ YP A K++A+ +++ Sbjct: 238 GAQRPLIGRQLAQGSLVRVLEEYHYPPMALHAVYPAARFIPAKVRAWVDYL 288 >gi|258543561|ref|YP_003188994.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634639|dbj|BAI00615.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-01] gi|256637695|dbj|BAI03664.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-03] gi|256640749|dbj|BAI06711.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-07] gi|256643804|dbj|BAI09759.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-22] gi|256646859|dbj|BAI12807.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-26] gi|256649912|dbj|BAI15853.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-32] gi|256652902|dbj|BAI18836.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655956|dbj|BAI21883.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO 3283-12] Length = 316 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 125/268 (46%), Gaps = 8/268 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 L F VA +GSF+ + + +SQ +ISR I+ LE G LF R R LT+TE G Sbjct: 17 SALHSFVRVAATGSFSAVSRETGVSQPTISRHIALLEAHYGTTLFARTTRSLTMTEDGRS 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L EV LET + L SG +R+ T G L + + E L +PD+ I+ Sbjct: 77 LLPHAYEVLEILETAETVLGRRRASVSGLVRLGVTTAFGLCLTR-RIGELLERHPDLAIE 135 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +++ + D+ + D A+R+ I SLI RKL + AAP L C P ++ Sbjct: 136 VVMRDAFGDLVEEGLDLAVRV-GDIAEGSLIARKLGVVRKWLVAAPSCLNRCGTPTHPRD 194 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L ++ + + D+N+ + + P + + NS +++ G GI LLP Sbjct: 195 LPEYPGVVYN--YGSSRLDWNFERDGEESVIAPS-AVFRANSSEAVLYAVESGLGIGLLP 251 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVY 270 ++ V++ + L R+ D PS Y Sbjct: 252 EFQVREAVASGRLTRLFADWNIPSLPFY 279 >gi|94312501|ref|YP_585711.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356353|gb|ABF10442.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 310 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 14/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + GSF AA+QL +S + ++R ++ LE+ +G +L R R L+LT+ G Sbjct: 7 MRVFAKLVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + S++ +E + + S SG LR+ T + G +LL L+ F LYPD+ + Sbjct: 67 QRCSQILEDVEEAESIVAARSQSLSGTLRLVTPVMFGLHLLPQILERFQQLYPDVVFDVQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI + D + L S L+ R L++ + A+P YL+ + +L Sbjct: 127 LSDRMIDIVEEGRDVGVMLSDLGLGSHLVARPLISAEVILCASPGYLREHPPLRNAHDLS 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIAL 243 H I +P + W T+ P GE R L N+ L+ Q + GIA+ Sbjct: 187 NHRAIAMR--LPNA--EHEW--TLSGPEGEVTVPIRPGLLCSNAELA-HQAALTNMGIAM 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 L Y+ + N L I+ P V YP K++AF +F+ Sbjct: 240 LSSYLARPNIEAGRLTHILPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLL 290 >gi|170699272|ref|ZP_02890322.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|172064888|ref|YP_001815600.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170135826|gb|EDT04104.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|171997130|gb|ACB68047.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 305 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G Sbjct: 6 SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V +++ + + ++ P G+L++ + + ++ L FL +P+I I+L Sbjct: 66 YERCVGVLREIDDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPGFLAAHPNISIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ + DC +R+ + S +I +++ ++ AAP YL C P ++ EL Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCAAPAYLDRCGAPETVDEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H + + W VD GE RI + VN + ++ V G G+ Sbjct: 185 AQH--VAISHISADTGRPRPWDYVVD---GETRIVQMCGTVAVNDADTYIECGVAGIGLI 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+ + L ++ D P + YP KLK F +++ Sbjct: 240 KTSLYLVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290 >gi|93006367|ref|YP_580804.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394045|gb|ABE75320.1| transcriptional regulator, LysR family [Psychrobacter cryohalolentis K5] Length = 301 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/276 (24%), Positives = 137/276 (49%), Gaps = 13/276 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F + +GS T AAEQL++++S++SR++ LET +G +L R R LT+ G + Sbjct: 5 EDMAMFVRIVEAGSITKAAEQLNIAKSAVSRRLKDLETRLGSQLISRTTRQSNLTQAGEQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +++ E + + G L++ + G L + E+ +P++ + Sbjct: 65 YYQKVNNILSEVDALNEETSGAPTRIEGILKMTAPLSFGLMHLNDVIDEYANQHPNLNFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ D+ + + IR+R+ +Q SS ++L I A+P YL P ++++ Sbjct: 125 LDFSDRHTDLVEEGFELGIRIRE-LQDSSYQAKRLALIRYTLCASPEYLSKMGTPTTLED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 KH + +G + + + +D + ++ S ++VN+ + + V G GIA Sbjct: 184 FAKHEFLQYG------LNKSSTIELIDEQGKKHQVAINSKIKVNNGDFLREMAVKGHGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 LP++I + LV IM+ P+ Y YP+ Sbjct: 238 FLPNFITYKTLASGALVPIMQQYQLPTLNAYAVYPK 273 >gi|91776980|ref|YP_546736.1| LysR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710967|gb|ABE50895.1| transcriptional regulator, LysR family [Methylobacillus flagellatus KT] Length = 291 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 142/291 (48%), Gaps = 17/291 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++R++ V + G+FT AA L +S+ +SR++ LE +G +L R R L+ TE G Sbjct: 5 EQMRIYAEVVKHGNFTAAARHLGISKQLVSRRVMELEERLGARLLQRTTRKLSPTELGRV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ + E+ S+ + G LR++ + +L L F+ L+P++++ Sbjct: 65 FFTRCQTILQEIDEAEQEVASSTGELRGLLRLSAPVSFASMVLSPALNRFMQLHPNLEVA 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +DN+ +D+ + D AIR+ K LI RKL + +P YL P S + Sbjct: 125 LDVDNRVVDLVGEGYDMAIRITKQ-PDEGLIARKLADSALAYCCSPSYLAQHGAPQSPMQ 183 Query: 186 LDKHNLIT--FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H IT G+ + ED L + P+ L+ N + + + G GI Sbjct: 184 LGRHRCITSKAGEWL---FEDAGELLKLQVHPV-------LRSNHGEVMCEAAIAGLGIV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++ V+ + LV+++++ VY YP + + +++F +F+ Sbjct: 234 GLPEFYVRKALETGALVQVLQEYTADIGAVYALYPPHRQASLMVRSFADFL 284 >gi|226952736|ref|ZP_03823200.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294650058|ref|ZP_06727445.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|226836527|gb|EEH68910.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292824068|gb|EFF82884.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 297 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V G+F+ +A+ L++S+ +S++I LE ++ + LF R R + LT G K Sbjct: 5 DCINTFLSVVEHGNFSTSAKNLNISRDLVSKRIQYLENDLKVSLFIRTTRRMNLTPCGEK 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +LE + E+ P G+L+I + +++L + +F+ +P I+I Sbjct: 65 FYQHAKVMMSELEWAKYEISYDQQYPEGELKINAPLSFSRDVLTDIISDFIQQFPFIKID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +DI D +R+ + + + T YA+ YL P +I + Sbjct: 125 LYLTDSFVDIYEQQFDLTLRV-DDVADHNFQNTVIGTYKRSFYASKEYLDKKGIPNTIDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L KH+++ + + T + P+ C N+ ++ C G GI LP Sbjct: 184 LKKHDILLYSQKNSHNKITLSRNETTELIQCYPKFIC---NNGDLLLDLCTKGHGIVFLP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+I K D + R +ED +P Y YP + KL+ F +F+ Sbjct: 241 DFIAKKYFDAGEISRCLEDYHSPMMNFYALYPNGQNISKKLQIFIDFM 288 >gi|161502022|ref|YP_001569134.1| hypothetical protein SARI_00039 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863369|gb|ABX19992.1| hypothetical protein SARI_00039 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 376 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 147/296 (49%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 79 RMSLFVAVVDSGSFTAAAAVSGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 138 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 139 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 198 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182 + + D+ + D AIRL S ++LI R + A+P +L R P+ S Sbjct: 199 MSSSHHADLIAERFDVAIRLGSLADSRYRATLISRFTIL----PVASPQWL--ARYPVSS 252 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVL 237 ++ L + I + + W T D R+ + V+S S+M + + Sbjct: 253 LESLAQAEWI----IHERLSTPLRWTLT-DNDGQHSRLEISKAGRISVDSARSLMAFALA 307 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP+++VK ++ LV ++ D P +Y YP+ + K++AF +F+ Sbjct: 308 GSGVALLPEWLVKTALEDGALVHVLPDYHFPRQGIYAVYPDTRHVSTKVRAFIDFL 363 >gi|229507959|ref|ZP_04397464.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286] gi|229511805|ref|ZP_04401284.1| transcriptional regulator LysR family [Vibrio cholerae B33] gi|229518942|ref|ZP_04408385.1| transcriptional regulator LysR family [Vibrio cholerae RC9] gi|229523966|ref|ZP_04413371.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis VL426] gi|229529028|ref|ZP_04418418.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)] gi|229607504|ref|YP_002878152.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236] gi|255745299|ref|ZP_05419248.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|262156023|ref|ZP_06029143.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1] gi|262167903|ref|ZP_06035603.1| transcriptional regulator LysR family [Vibrio cholerae RC27] gi|262192172|ref|ZP_06050332.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93] gi|229332802|gb|EEN98288.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)] gi|229337547|gb|EEO02564.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis VL426] gi|229343631|gb|EEO08606.1| transcriptional regulator LysR family [Vibrio cholerae RC9] gi|229351770|gb|EEO16711.1| transcriptional regulator LysR family [Vibrio cholerae B33] gi|229355464|gb|EEO20385.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286] gi|229370159|gb|ACQ60582.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236] gi|255737129|gb|EET92525.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|262023630|gb|EEY42331.1| transcriptional regulator LysR family [Vibrio cholerae RC27] gi|262030201|gb|EEY48845.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1] gi|262031961|gb|EEY50539.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93] gi|327484487|gb|AEA78894.1| Transcriptional regulator [Vibrio cholerae LMA3894-4] Length = 296 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ +F V GSFT AAE L +++S +S QI+ LE + ++L R R ++LT +G Sbjct: 4 ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLTTEG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + + E + + + SG +RI TTID+G LL L EF YP + Sbjct: 64 DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LD+ D+ D IR+ + + SSSL+ R + + YA+ YL+N +I Sbjct: 124 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 182 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L++H+ + L +P V + S NS L +M G G+ Sbjct: 183 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 240 Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ P+ LVR+ D S T+ YP +++ F +++ Sbjct: 241 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 290 >gi|157374744|ref|YP_001473344.1| LysR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157317118|gb|ABV36216.1| transcriptional regulator, LysR family [Shewanella sediminis HAW-EB3] Length = 295 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 6/245 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V +GS + A+ + SSISRQ+ LE E+GI L R R + LTE G Sbjct: 6 RLHYFNCVVETGSISEASRVFDVQPSSISRQLIALEKELGISLINRTTRNIGLTEAGLTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + +L+ + + P G L+++ T+ G++ + + F+ L+PDI+I+L Sbjct: 66 YQYSQRIVSELDEAHRAVNDLQQNPKGSLKVSMTVGFGESCVLPLVPVFISLFPDIKIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + ID+ D D AIR + + S+LI RKL + ++P YL P + Q L Sbjct: 126 ELTERVIDLVEDNVDIAIRSGR-LPDSNLIARKLADNNFLLCSSPQYLAQHGSPETPQAL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I +G + +W ++P + VNS Q + +G+AL+P Sbjct: 185 TDFDCIRYGYAGWR-----DWYLMDEKPKKLSIRDGITVNSVNGQKQLLLSHAGLALMPL 239 Query: 247 YIVKD 251 + V+D Sbjct: 240 WAVRD 244 >gi|85703918|ref|ZP_01035021.1| Putative LysR-family transcriptional regulator [Roseovarius sp. 217] gi|85671238|gb|EAQ26096.1| Putative LysR-family transcriptional regulator [Roseovarius sp. 217] Length = 295 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 22/297 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + LR F VA +G + AA +L +S+S +SR++ LE E+G++L R RG LTE Sbjct: 1 MDIEDLRTFVDVADAGGISAAARRLGVSKSIVSRRLFKLEGELGVQLLLRTTRGAALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G + + ++EL ++ P+ G+LR+A + G L E Sbjct: 61 GITFREHAARI-----GAELELARETILPTGELRGRLRVAMPLTFGPTHFAPVLAELSKR 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 P +Q+ ++ +DI + DCAIR+ ++ S+LI +++ I A+P Y+ Sbjct: 116 NPKLQVHATYSDRFVDIIAEGFDCAIRVGY-LEDSNLIAKRIGPITGKLVASPDYIAEHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P ++ +L H + G W L R I + ++ +++M CV Sbjct: 175 VPETLDDLATHRALMQG--------TETWHLTDGGRTITFQPQGIFKADNGIALMTACVA 226 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GI LPD I + LV +M + P Y P KL+ + + Sbjct: 227 GLGIGYLPDCITHQHVASGRLVEVMPNHQPPPAAAYVIRPPGQHPARKLRVLTDMLI 283 >gi|322834321|ref|YP_004214348.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321169522|gb|ADW75221.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 298 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 132/269 (49%), Gaps = 9/269 (3%) Query: 25 EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84 E++ +S S++ + ++ LE ++ ++LF R R ++LT++G + +LE + EL Sbjct: 24 ERMGISASAVGKSVARLEEKLSVRLFNRSTRRISLTDEGQLFFERCQHIVSQLEEAEQEL 83 Query: 85 QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144 S P GKLRI T +G +L +L EF YPD+++ L ++ +D+ + D AI Sbjct: 84 VRISAVPRGKLRI-TAPAIGYRILLPHLPEFRQRYPDVELDLDFSDRMVDVIDEGFDIAI 142 Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204 R + + SS ++ R+L APHY PL+ +L +H + + P + Sbjct: 143 RSGE-LNSSQMMSRRLGPFRFAIVGAPHYFARHPAPLTPDDLYQHACLRY--RFPGNGQW 199 Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED 261 W T P P L N+ SI+Q + G G+A +P++IV+ ++ L+ ++ Sbjct: 200 QEWEMTSVTPPELP--LALSSNNLESILQATIQGLGLAYVPEFIVRPHLESGELISVLPA 257 Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +P + K++ F +F+ Sbjct: 258 YLKEGGKFSVVWPSSRHMLPKVRVFIDFL 286 >gi|262044679|ref|ZP_06017731.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037943|gb|EEW39162.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 305 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A + SF AA L +S S++ + ++ LE ++G++LF R R ++LT +G+ Sbjct: 6 SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + EL S +P+GKLRI+ + +G LL L F LYP +++ L Sbjct: 66 LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQVELDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +++ + D AIR + S LI RKL A+P YL P S EL Sbjct: 125 DFSDRLVNLIDEGVDVAIR-SGELADSRLIARKLGGFRFVLCASPTYLAEYGVPGSPAEL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLP 245 H I F P W R G+ R + + VN+ + ++ G GIA +P Sbjct: 184 AAHKCIFF--RFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYVP 241 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D++V+ D L ++ +P + + +++ F +FI Sbjct: 242 DFVVREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFI 289 >gi|194364208|ref|YP_002026818.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347012|gb|ACF50135.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 293 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 25/293 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V F+ AA+ L LS + ++R ++ LE + +L +R R ++ T G+ Sbjct: 5 EAMRVFVAVVERNGFSAAAQALDLSTAGVTRHVAALEKRLATRLLHRTTRRVSPTSAGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + + +++PSG LRI + G L L + +P +++ Sbjct: 65 YYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRERFPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P S +LI R+L + AAP YL P + Q Sbjct: 125 LALSDRLVDMVEEGYDVAIRITREP--SPTLIARRLGESRVSLCAAPSYLAARGAPKTPQ 182 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 EL H +++ GD P + P GE ++ S L N+ + + + Sbjct: 183 ELQAHACLSYSYWSAGDHWP-----------LQGPGGEVKVAVSSLLHANNGDVLREAAI 231 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+ L PD++++D + LVRI+ + ++ Y K+++F Sbjct: 232 AGMGVILQPDFLLEDALADGRLVRILPEWEASPIGIFAVYTSRSHLAPKVRSF 284 >gi|293611508|ref|ZP_06693797.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826158|gb|EFF84534.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122482|gb|ADY82005.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 299 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 145/295 (49%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QN L L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QL++ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL + Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238 + ++L +H +++ + + ++ L D + ++S + + + + ++ Q Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFLLHGPDNQQKKIKVSPIVMGTNIHMLAQLASQN 237 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP+ +D + LV+I+ + P ++ YP G L A R FI Sbjct: 238 CGIALLPESAAEDFLKSGQLVQILPEWKAPHGILHAVYP---SRRGLLPAVRVFI 289 >gi|157371376|ref|YP_001479365.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323140|gb|ABV42237.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 323 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 139/288 (48%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V S SFT +QL +S S++S+ I+ LE + +LF+R R +TLT +G+ Sbjct: 7 LDVFVRVGESRSFTTTGQQLGISASAVSKAIARLEERLATRLFHRSTRNVTLTPEGALFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++E + EL +S+ P GKLR++ ++ L L EF YPDI++ + Sbjct: 67 ERCRRILGEVEAAENELAQSNQMPRGKLRVSLPSVGL---LFMPQFAEFKRQYPDIELDI 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ + D IR +P S L+ RKL + AP Y + C P + +EL Sbjct: 124 DCSDRLVDVIEEGFDAVIRTGEP-SDSRLMARKLGSYRRIMVGAPRYFEQCGVPNTPEEL 182 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H + + P + W L+ + + S + N+ ++ + G GIA +P Sbjct: 183 MQHRCLRY--RFPSSGKVDQWPLSRGGQILTFDLASSMTANTLEPLVCFAESGLGIACMP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D ++ +LV +++ + +P + + KL+ F +++ Sbjct: 241 DIAIRQQLEVGSLVSVLDGFNQDHTILRVLWPSSRHLSPKLRVFVDYV 288 >gi|289679703|ref|ZP_06500593.1| LysR family transcriptional regulator [Pseudomonas syringae pv. syringae FF5] Length = 302 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 13/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A SF+ AAE+L + S++SR I LE ++GI LF R R L LTE G Sbjct: 7 LTAFVESANGNSFSKAAERLGIKASTVSRYIKDLEQDLGIALFNRSTRKLALTEGGQTFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +L + + P G+L+++ ++ + + EF+ YPDI + L Sbjct: 67 YHAQKVLFELSEAKAATSALNQNPRGRLKVSLPPAFARHHILPLVGEFIKRYPDITLDLC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+ +D+ D AIR+ + + +S+L RKL + +P + +P +L Sbjct: 127 LEESQVDLIATGIDLAIRIGR-LANSNLKARKLAEVKTFLCVSPEFAARYSQPDCPDQL- 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +++ G P+ + N V P+G + L +N + + G G+ALLPD+ Sbjct: 185 PVDMMIIGRQCPEALIWANDNEQVSLPVG----AVLWINDLDAQLIAVSSGLGMALLPDW 240 Query: 248 IVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + + LVR + D S V+F YP + K++ F +FI + D Sbjct: 241 LASASLRDGRLVRWLPDWEIKTSQESGAVWFVYPPKRIVSSKVRCFIDFIAERVVD 296 >gi|300696736|ref|YP_003747397.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299073460|emb|CBJ52976.1| Transcriptional regulators, LysR family [Ralstonia solanacearum CFBP2957] Length = 293 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 120/251 (47%), Gaps = 14/251 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F +A +F AA L +S S++S + LE +G++L R R ++LTE G +L Sbjct: 1 MTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGEQLL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R LE E+ +PSG +RI+ + + +++ L +FL YPDI ++ + Sbjct: 61 RRVRPAVADLEDAVNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHVECV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D + +DI D D IRL + + + R + A A+P YL N P + Q+L Sbjct: 121 VDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPQDLA 180 Query: 188 KHNLITF----GDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +H I F G L +E A VD P L + + ++ + G GI Sbjct: 181 QHRCIRFRFESGALYRWDLEHRGKAAHINVDGP--------LTLGNLNLAVEAALAGIGI 232 Query: 242 ALLPDYIVKDN 252 A +P+++V ++ Sbjct: 233 AWVPEHLVAEH 243 >gi|157373592|ref|YP_001472192.1| LysR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157315966|gb|ABV35064.1| transcriptional regulator, LysR family [Shewanella sediminis HAW-EB3] Length = 309 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 134/299 (44%), Gaps = 21/299 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L L+++++SR+I+ LE + G++L +R R L LTE Sbjct: 1 MDLNRVQMFAQVVEQGSFTGAAKALGLTKATVSRKIAELEADAGVQLLFRTTRSLKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + L+ + L S GKL+I I++GQ FL YPDI Sbjct: 61 GSAYYNRVHHILIDLKNAEDLLSASQQLIKGKLKIVCPIEMGQLFFGRIFARFLKQYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCRE 179 I+ L N+ +D+ + D + I SSS L L+ A+P YL Sbjct: 121 SIEAELSNRKVDVIEEGVDVLFQ----ITSSSDTRLQTYSLLNTSKTLMASPEYLAQYGT 176 Query: 180 PLSIQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P + Q+L+KH + D + W+ EP + L VN+ + Sbjct: 177 PQTPQDLNKHRAVKLESAHIDGSWTLFDGKEWITV------EPE-AQLTVNNVTLAREAA 229 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + G GI +P I + D L+ ++ED + P+ K + F FI+ Sbjct: 230 IEGLGITSVPSLIAQQAIDKHLLIPLLEDFPMAQTKITMSLPQRAYLPRKYRVFIEFIY 288 >gi|317492111|ref|ZP_07950541.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919816|gb|EFV41145.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 300 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 13/251 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ VF VV GSF+ A +L +S S++S+ + LE E+ + L +R R LTLT+ G+ Sbjct: 5 NRMAVFAVVVAEGSFSAAGRRLGMSPSAVSQHMRTLEQELRVTLLHRSTRKLTLTDAGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + H+ + L E G+LRIATTI LG L L L +P + ++ Sbjct: 65 FYPGCKAMLHEASQAEQRLAEMRDTLVGELRIATTIGLGGAPLAQALAPLLQAHPKLSLR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +++ I++ AD A+R+ + + +S I L M A+P YL C P + E Sbjct: 125 ILANDEIINLIEVRADIALRVNRQLDDASYIAHPLAVWPMVLCASPRYLNRCGIPETPDE 184 Query: 186 LDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQ----YCVLGS 239 L +H L+ + +P +E + R GE R IS + + S M + + G Sbjct: 185 LSQHQWLVNTNEAVPASIE-------LHRNNGETRKISLPDIATGSSSMNVLRAFTLEGI 237 Query: 240 GIALLPDYIVK 250 GI++ P Y ++ Sbjct: 238 GISIQPLYEIE 248 >gi|206576553|ref|YP_002239098.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206565611|gb|ACI07387.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 301 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 2/191 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L+ F V +GSFT AA+ L + +++S+ I LE +G+ L R R +T+T +G Sbjct: 4 FSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTPEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + LE + KP G LRIA ++L L +F+ +PDI+I Sbjct: 64 EYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLADFMTAWPDIRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +K D+ DCAIR P+ S+LI RK+ + A P YL+ C P S Sbjct: 124 DLQVADKPADLISGNIDCAIR-GGPMDDSTLIARKIGEATLVTCATPGYLQRCGTPASPD 182 Query: 185 EL-DKHNLITF 194 EL H LI++ Sbjct: 183 ELHHGHQLISY 193 >gi|260775796|ref|ZP_05884692.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260608212|gb|EEX34381.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 317 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 130/295 (44%), Gaps = 23/295 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GSF AA++ S++S+ + LE+E+GI+LF R R L LT G + Sbjct: 7 LRFFVATLERGSFAAAAKKYGTDPSTVSKALHRLESELGIQLFQRSTRQLNLTSAGHQYA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R V +L + LQ+S+ PSG L++ + G+ +Q L F LYP+I +++ Sbjct: 67 RTARLVLDELSACEEALQQSNRLPSGTLKVNLPVSYGRRYIQPLLANFRQLYPNIALEIQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +D+ D +IR +Q S LI R+L I A+ YL P E Sbjct: 127 FDDAYLDMIEHGIDVSIR-SGSVQDSQLIARQLSPIDYLICASHDYLNQHGAPRGPHEFH 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H+ I F + + L P E ++ + VN S+ + C G G+ Sbjct: 186 HHSWIRF-----RFKQTGRLLGLKLAPSDEAKLPDIAQNMVVNDGESMAELCAQGLGLTQ 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290 +P +I +D I ITP F VY Y ++K F +F+ Sbjct: 241 IPHFIARD-----WIKAGEITPLFPSFRPRDEGVYILYHRREHVPLRVKLFVDFV 290 >gi|239820269|ref|YP_002947454.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] gi|239805122|gb|ACS22188.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 308 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L+ F V +GSFT AA+ LH+S++++++ + LE + ++LF R R + +T +G+ Sbjct: 4 FDALQAFARVVEAGSFTKAAQTLHMSKTTVTQLVQQLEARLRVRLFNRTTRQVRVTAEGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE L +S P G+LR+ + +L L F +P+IQ+ Sbjct: 64 AYYDRVVRLLADLEDADASLLGASASPRGRLRVDVPTPFARMILVPALPAFHARHPEIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + ++ +D+ D DC +R + + SSL R++ + + +AAP YL+ P Sbjct: 124 ELGVSDRMVDLIGDNVDCVLRGGE-LTDSSLTARRVGELRLGVFAAPCYLERAGTPAHPN 182 Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ H ++ + G + M+ + G ++ N+YL+ V Sbjct: 183 ELEGTHHRIVGYLSTRSGKVAALRMQRGAEHIELQ---GRHVVAVDDGNAYLAA---GVA 236 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP Y+ + LV + E + +Y +P + KL+ F +I Sbjct: 237 GMGVLWLPHYMAAPHVAQGELVPLFEGWHFGAMPMYVMFPPNRHASAKLRVFIEWI 292 >gi|218663778|ref|ZP_03519708.1| probable transcriptional regulator protein, LysR family [Rhizobium etli IE4771] Length = 293 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 13/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G A+++L L+ +++SR+++ LE + +LF R G LT + Sbjct: 1 MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q L + +G +R+ G + L + + +P + Sbjct: 61 GGVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQL+ + +S AD AI L +P Q L+ KL + YA+ YL P Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVFSKLTDYTLGLYASRDYLAAHGGPGD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239 ++ L H I + +ED + A+++ GE S ++++ + + G+ Sbjct: 180 VEALKAHPRIGY-------VEDLLFTASLNFS-GEVMRSWDAGFEISTAIGQTEAVRSGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +L DYI + P L RI+ + I+ + Y E ++ ++++ +F+ Sbjct: 232 GIGILHDYIARQYPELQRILPE-ISIRRAYWTTYHETARDLVRVRSVVDFL 281 >gi|167893084|ref|ZP_02480486.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] Length = 274 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 10/246 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF AA L +S S++ ++I+ LE + ++LF+R R + LT +G++ Sbjct: 9 VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++E + EL S+ PSG+LR++ LG +L L +F+ YPDIQ+ L Sbjct: 69 CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LGAPVLP-VLADFMAAYPDIQLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P + S L R+L T +P Y P + +L H Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185 Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W A D + PR + N+ + + + + G G+A +PD Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFALRGRGLACVPD 241 Query: 247 YIVKDN 252 + V+D Sbjct: 242 FAVRDE 247 >gi|312831472|emb|CBY17654.1| LysR family transcriptional regulator [Sinorhizobium meliloti] Length = 296 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 15/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVA+ SFT AA +L +S S++S+ I LE +G++L R R + TE G Sbjct: 3 NFNDLAAFAVVAKERSFTRAAAKLRVSPSALSQTIRNLEERLGLRLLTRTTRSVASTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R + + ++E L E KP+G +RI +LLQ LK FL YPDIQ Sbjct: 63 ERLLRTIAPRFDEIEAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPDYPDIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I+D DI + D +R+ + + + R + M A+P Y + P + Sbjct: 123 VEIIIDYGLTDIVAEGYDAGVRMGEQVAKDMIAVRIGPDMRMALVASPGYFERHPLPKTP 182 Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L HN I T+G + P +E V R G+ L NS + + G Sbjct: 183 QDLTDHNCINIRLPTYGGVFPWGLEKDERDVKV-RGDGQ-----LVFNSLAMRLASALDG 236 Query: 239 SGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCY 273 G+A +P D+++ + LVR++E+ P F Y Y Sbjct: 237 LGVAYMPEDHVLPYLGDGRLVRVLEE-WCPYFPGYHLY 273 >gi|237801279|ref|ZP_04589740.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024138|gb|EGI04195.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 303 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 7/297 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + +F V RSGSF AA L + +++SR++ LE ++G +L R R LTLT Sbjct: 1 MVPDLNDIALFVQVVRSGSFAQAARHLGMPSNTVSRRVQELEVQLGTRLLQRSTRKLTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + ++ L L +PSG++RIA T D + +FL YP Sbjct: 61 QAGEDFYGRCTDAVDGLMDAAEHLVSGREEPSGRVRIAATADFFDFFSMDWVADFLARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179 +Q++ +L ++ D+ D D A R P+ S + R+L+ A+P Y+ Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLLDSGYVGRQLIDEARDGMVASPAYIATHGV 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P S+Q L H ++ + P + L R S N+ ++ + + G Sbjct: 180 PDSLQSLQHHYCVSA--VHPGGASGWRLLGPDARMHDVQIASRFTANTAQALRKAALAGL 237 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIALLP +++ + LV I+ S ++ YP + + AF + K Sbjct: 238 GIALLPAPLIRSDLRDGLLVPILAQYQRTSHGLHVLYPSRQQLPLAVSAFIEMVMEK 294 >gi|254185358|ref|ZP_04891946.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|184209593|gb|EDU06636.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 303 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VVA +G F+ AA QL + SS++R + LE +G+ L R R +TLT+ G+ Sbjct: 7 LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ +P G LR++ + + +L +L FL YP + + L Sbjct: 67 EQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D D A+R+ +P + L+ R L A+ YL P + +L Sbjct: 127 VSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 H + F P +W + D + + + L I++ VL G G+AL+P Sbjct: 187 AHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVPM 242 Query: 247 YIVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ L+ + E +TP VY Y +++ K++ F F+ Sbjct: 243 WLVHDDIVAGRLLPLFESWCVTPPGGDARVYAAYLPNRRHSRKVQTFIAFL 293 >gi|319781816|ref|YP_004141292.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167704|gb|ADV11242.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 294 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 7/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F A G+F A L +S S++ + ++ LE E+G++L R R + LTE+G Sbjct: 5 NGLLAFARTAEFGNFVAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRIGLTEEGKL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + L + P G+LRI+T I + +LL L EF+ YP+I++ Sbjct: 65 FNERVRRILDDIDDAEAMLSRTRETPRGRLRISTPI-VTYHLLLPVLSEFMARYPEIELD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ +D+ + D AIR + S L+ R + M AAP YL+ P + Sbjct: 124 IDFNDRIVDVIDEGIDVAIR-SGELPDSRLVSRPVAPFRMLLCAAPSYLERHGTPGEPAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H I F L + ++ ++ EP+I S L N+ ++ + G GIA + Sbjct: 183 LIRHFGINFRFLNSGRLLEWPFITGS----AEPQIRSMLTCNNMEALKGATIAGLGIACM 238 Query: 245 PDYIVKD 251 PD++V++ Sbjct: 239 PDFLVRE 245 >gi|209543061|ref|YP_002275290.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530738|gb|ACI50675.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 288 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 135/291 (46%), Gaps = 17/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SFT AA L L +S+++ + LE +G++L R R ++ T G+ H Sbjct: 1 MRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTLDGAAYH 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + LE + +P G LR+ L ++ + L +F+ YPDI++ L Sbjct: 61 RRCLALIADLEDAEAAF--GGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIELTLS 118 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ +Q S ++ R++ + AAP YL P + LD Sbjct: 119 EGDRLVDLIREGIDCVLRVGD-LQDSDMVARRVAMLEEVTCAAPSYLARFGMPGDVDALD 177 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H ++ F G L+P + L T+ +S + VN S++ LG G+ Sbjct: 178 GHRMVGFRSSATGTLLPLEFMVGDSLRTIT------LLSPVAVNGAESLVAAARLGLGLV 231 Query: 243 LLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y +V+D LV ++ D V YP + +++ F ++I Sbjct: 232 QVPRYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWI 282 >gi|90409283|ref|ZP_01217383.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3] gi|90309618|gb|EAS37803.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3] Length = 300 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF SGSFT A L++ SSI+R I LE E+G+ LF R R L +TE G + Sbjct: 3 DLIRVFIQTVDSGSFTKAGAVLNMVPSSIARNIDNLEKELGVTLFKRSTRQLLITEDGQQ 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ + + + + +P G L+I+ G+ + L EFL YP +Q++ Sbjct: 63 FLGGATKLLQDADNLVASMSKINREPEGILKISVFESFGRQCISPILPEFLQRYPKVQVE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ ID++ + D IR+ +P S L R L+T H A+ YL+ P + ++ Sbjct: 123 IELDNQMIDLNSENVDIGIRIGRP-ADSCLHARMLLTNHTLLCASADYLEKYGTPKTPKD 181 Query: 186 LDKHNLITFGD 196 L HN + + Sbjct: 182 LIHHNCLLLAN 192 >gi|77460858|ref|YP_350365.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384861|gb|ABA76374.1| putative LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 301 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 7/291 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + V+ V SGS T AA Q +S + + + LE +G++L R R LTE GS Sbjct: 4 FQSMSVYVKVVESGSMTAAALQCEMSTTMVGNHLRALEQRLGVQLLQRTTRRQRLTEFGS 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ EV + ++ +++ +P G LR+ + G L L EF L P +++ Sbjct: 64 VYYQRCLEVLGLVADSERLAEQTLDEPRGILRVTAPLTFGVERLAPALSEFSLQCPQVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +IL N+ D+ D A RL S+LI R L+ + A+P Y+ PL+ + Sbjct: 124 DVILTNRRPDLLESGLDVAFRLGH-FDQSNLIARPLIDYTLTVCASPEYVARRGMPLTPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241 EL +H+ ++F + + P GE + + +NS + Q G GI Sbjct: 183 ELRQHDCLSFAYPAGDDWQSVEKQWRLSGPDGEIMVDVKGPMLINSSAGLHQAARTGMGI 242 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +LPD +V+ + LV +M D P+ ++ Y KL+ F F Sbjct: 243 VMLPDALVEQDLRDGRLVVVMPDYQPPNRPMHLLYAPDRYRLPKLRRFVEF 293 >gi|84386214|ref|ZP_00989243.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] gi|84378984|gb|EAP95838.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] Length = 297 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 11/291 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V + SF AA +L +S+S++++++ LE+ +G++L +R R ++LTE G + Sbjct: 5 DAIPYFLAVVKQSSFAGAARELGVSRSAVNKRVIQLESSLGVRLLHRTTRQVSLTESGEQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + L+ + + G LR++ + G+ +L + +FL YP I I Sbjct: 65 FYDHLTKANYWLQKAEDAATSQQNQAIGTLRVSAPMSFGRLVLAPLIPQFLKRYPHIHID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLSI 183 + +D+ +DI D AIR + SSL+ ++L ++ A+P Y P I Sbjct: 125 MTMDDGYVDIVEGGYDVAIRAGD-LNDSSLVAKRLTSVRSVICASPTYFDENGLSIPTEI 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL HN + L E W D+ +VN+ +++ + G GIA Sbjct: 184 CELSAHNAL----LYRHTSESAEWFFGHQDQVTSVVVKGNYRVNNSEALLCATMAGLGIA 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+I + L+ ++ + P VY +PE KL+ F +F+ Sbjct: 240 RLPDFIANAPIQSGELLPLLPSYLMPEKNVYALFPERDPMPLKLRLFIDFL 290 >gi|182680170|ref|YP_001834316.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636053|gb|ACB96827.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 302 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 127/272 (46%), Gaps = 12/272 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VA GSF+ A + +SQ++I R+I LE I LF+R R + LT+ G Sbjct: 5 EDLHCFVRVAECGSFSIVARENMVSQATIGRRIGTLEDHFKILLFHRSTRKIVLTDAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E + L S +P G++R+A+T GQ L++G L +F YP + I Sbjct: 65 FLVYARRILQEFEAAENALGRHSAEPKGRVRVASTNAFGQYLIRG-LAQFNERYPGLHID 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L + I++ D D A+++ + + SS++ R L + A+P YL P Sbjct: 124 LVLGDGFINLIEDGFDLALKIGE-VTESSVVARHLGDVPRSLVASPAYLAKHGAPEDASA 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + F + +N ++ R G + NS ++ + G GI+L P Sbjct: 183 LQHHECVLFS--YGATRQVWNVGGSLVRVSG-----SFRTNSSIAQFEAVRNGMGISLFP 235 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 + V ++ L+R++ D+ Y YP Sbjct: 236 WFQVDEDVRSGRLIRLLPDMPIEPIHFYMTYP 267 >gi|167585238|ref|ZP_02377626.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 320 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 147/296 (49%), Gaps = 16/296 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ YPD+ +++ Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMRAVTDYADRYPDVTVEI 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+ YL+ P +I + Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHIMLVASSDYLEKRGTPQTIAD 185 Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241 L HN + T ++ + D + V+ ++ + ++L ++ VL G+GI Sbjct: 186 LAHHNYLRRDTNATMLDAMVTDAAAASRVN-------LNGNLIVNHLEGLRAAVLGGAGI 238 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ALL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 239 ALLGTEVVGDDLEAGRLVPVLLDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|15641949|ref|NP_231581.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727819|ref|ZP_01680886.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|147675040|ref|YP_001217477.1| LysR family transcriptional regulator [Vibrio cholerae O395] gi|153818743|ref|ZP_01971410.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|153822513|ref|ZP_01975180.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|227082077|ref|YP_002810628.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|254226491|ref|ZP_04920076.1| transcriptional regulator, LysR family [Vibrio cholerae V51] gi|254286879|ref|ZP_04961831.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|254849033|ref|ZP_05238383.1| transcriptional regulator [Vibrio cholerae MO10] gi|297579459|ref|ZP_06941387.1| transcriptional regulator [Vibrio cholerae RC385] gi|298498018|ref|ZP_07007825.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9656485|gb|AAF95095.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629855|gb|EAX62269.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|125620997|gb|EAZ49346.1| transcriptional regulator, LysR family [Vibrio cholerae V51] gi|126510706|gb|EAZ73300.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|126519987|gb|EAZ77210.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|146316923|gb|ABQ21462.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|150423029|gb|EDN14978.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|227009965|gb|ACP06177.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|227013845|gb|ACP10055.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|254844738|gb|EET23152.1| transcriptional regulator [Vibrio cholerae MO10] gi|297537053|gb|EFH75886.1| transcriptional regulator [Vibrio cholerae RC385] gi|297542351|gb|EFH78401.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 309 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 6/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ +F V GSFT AAE L +++S +S QI+ LE + ++L R R ++LT +G Sbjct: 17 ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLTTEG 76 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + + E + + + SG +RI TTID+G LL L EF YP + Sbjct: 77 DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 136 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + LD+ D+ D IR+ + + SSSL+ R + + YA+ YL+N +I Sbjct: 137 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 195 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L++H+ + L +P V + S NS L +M G G+ Sbjct: 196 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 253 Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYP 274 + +++ P+ LVR+ D S T+ YP Sbjct: 254 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYP 287 >gi|50123139|ref|YP_052306.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49613665|emb|CAG77116.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 295 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 17/288 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F + GSF AAE L +S +++Q++ LE +G++L R R +LT+ G + + Sbjct: 7 MKIFVKASELGSFVAAAEVLGISPQMVAKQVAWLEARLGVRLLNRTTRRQSLTDIGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E +E V PSG +++ + G +LL + +L YPD QI L Sbjct: 67 ERCKVVLAEAEDADAIAREMQVTPSGVIQVNAPVTWGSHLLAPFITRYLARYPDTQIALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D + + IR+ + + SS++ L + A A+P YL P + L Sbjct: 127 LNDRIVDPIEEGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLAREGSPDTPSSLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +H + +G W+ D RP G L N + +++ + G GI Sbjct: 186 RHACLIYGAR--AVATSCRWVFQKDGKPEEVRPEGR-----LFANDWNALLHAAIAGYGI 238 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 L P+ +++ D LV+++ D P+ V+ P ++ K+K F Sbjct: 239 TLGPEAVLRKEIDRGRLVQVLSDYNGPARPVHVMVPMGRRSAVKIKTF 286 >gi|107023899|ref|YP_622226.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690985|ref|YP_836608.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734320|ref|YP_001766267.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894088|gb|ABF77253.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116649074|gb|ABK09715.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|169817562|gb|ACA92145.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 320 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 20/298 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 L HN + D N + V R+S L VN + + G+ Sbjct: 186 LANHNYLR---------RDSNSTMLDSLVIDAAAASRVSLNGNLIVNHLEGLRAAVLAGA 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIALL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 237 GIALLGTEVVGDDIESGRLVPLLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|53721476|ref|YP_110461.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76818600|ref|YP_337135.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|134282916|ref|ZP_01769618.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167722513|ref|ZP_02405749.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167741494|ref|ZP_02414268.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167818685|ref|ZP_02450365.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167827060|ref|ZP_02458531.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167897132|ref|ZP_02484534.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167905508|ref|ZP_02492713.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|217424451|ref|ZP_03455949.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|226196533|ref|ZP_03792114.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237510523|ref|ZP_04523238.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|254187238|ref|ZP_04893752.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254198896|ref|ZP_04905314.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254264418|ref|ZP_04955283.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254296760|ref|ZP_04964214.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|52211890|emb|CAH37894.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76583073|gb|ABA52547.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] gi|134245564|gb|EBA45656.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|157806589|gb|EDO83759.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157934920|gb|EDO90590.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|169657068|gb|EDS88462.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|217392375|gb|EEC32399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|225931409|gb|EEH27415.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|235002728|gb|EEP52152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|254215420|gb|EET04805.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 303 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VVA +G F+ AA QL + SS++R + LE +G+ L R R +TLT+ G+ Sbjct: 7 LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ +P G LR++ + + +L +L FL YP + + L Sbjct: 67 EQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D D A+R+ +P + L+ R L A+ YL P + +L Sbjct: 127 VSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 H + F P +W + D + + + L I++ VL G G+AL+P Sbjct: 187 AHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVPM 242 Query: 247 YIVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ L+ + E +TP VY Y +++ K++ F F+ Sbjct: 243 WLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFL 293 >gi|222081129|ref|YP_002540492.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725808|gb|ACM28897.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 304 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 142/297 (47%), Gaps = 25/297 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LRVF VA SFT AA++L LS + S+ + LE+ +G +L R +R +++TE G Sbjct: 6 SLRVFCTVAELKSFTAAADRLGLSPAMASKHVMHLESRLGTRLLNRTSRHVSITETGMLY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ L+ + + +V P G L+ + + + L+ + E+ YPD++ + Sbjct: 66 FNQARQMLDGLDEVEAAVSNVTVMPRGILKFSAPVWIANTLIARTIAEYHQRYPDVRFDM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +++ + D A+R P + SLI R L+ + H AP YL P+++ + Sbjct: 126 DLSGRIVNLVDEGFDLALRATTPERLDPSLIARPLMEVGFHLVGAPAYLSRTGRPVALTD 185 Query: 186 LDKHNLITF------GDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 L+ H+L+ + G L P+ E N+ RP+ +Q + + + + Sbjct: 186 LNGHSLLLYSGINASGSLTFKGPQGPETVNF-----RPV-------MQSENEIMLHLAAL 233 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP ++ + + L ++ D + S T++ YP + K++ F +F+ Sbjct: 234 EGMGLVFLPVWMTQTDIAEGRLELVLPDAVKFSATLHAVYPSRKYLSAKVRTFIDFL 290 >gi|149927090|ref|ZP_01915348.1| transcriptional regulator, LysR family protein [Limnobacter sp. MED105] gi|149824311|gb|EDM83531.1| transcriptional regulator, LysR family protein [Limnobacter sp. MED105] Length = 315 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS ++++L+ F +V +GSF AA+ + SSISR I+ LE + I+L R R + Sbjct: 1 MSNNFNELQAAETFLMVVNTGSFAAAAKLKGENPSSISRAIAQLEAHLNIRLLNRTTRQV 60 Query: 58 TLTEQGSKLHRVTSE--VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115 +TE G +++++ ++ + + E Q S +P G +RI+ + +G+ +L L EF Sbjct: 61 KITEAG-EIYKLYAQRMLESQQEARDAITQLQSGQPHGTVRISLPVIVGEKILAPRLSEF 119 Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 YPD+Q+Q+ L N++ I + D A+R+ +Q S+L RK+ TI YAAP YL+ Sbjct: 120 HAKYPDVQLQVDLSNRNAMIVEEGFDIALRV-GLLQDSTLRARKVATIWRKLYAAPAYLE 178 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQY 234 P + +L H I F + +F W +P + R IS L +S + +++ Sbjct: 179 KHGVPQTPADLVHHQCIAFSQRGDQKEWEF-WPKNGAQPSQKHRVISWLTCSSPMMVVRA 237 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMED-----VITPSFTVYFCYPEALKNTGKLK 284 G G+ D++++ LV I+ D T +Y +P L + LK Sbjct: 238 IQSGLGLGRSADWMLQGALARGELVEILSDWYCDNPATGGLPMYLVFPPGLSSQLSLK 295 >gi|66046293|ref|YP_236134.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63257000|gb|AAY38096.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 298 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S I + I LE +G++LF+R R + LT +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LE ++EL + P G+LRI ++ L L+ + +F+ YPDI++ + Sbjct: 69 CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ +++ + + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRVVGAPDYFARHGIPRHPGDLSQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P +W + R G + Q N+ ++ G G+A LPD Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGVACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ N L+ +++D + T +P + + +L+ F +F+ Sbjct: 242 FMILSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288 >gi|331016884|gb|EGH96940.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 301 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + +G W +P+ ++ N+ + + G GI Sbjct: 183 DLHSHECLPYGH-----SRHVQWRFQGTGKPVSLNVSGRIRANNGELLKDAALAGLGITY 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV D +LVR+++++ T+ YP+ + + ++AF F+ Sbjct: 238 LPTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|253690505|ref|YP_003019695.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757083|gb|ACT15159.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 315 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 12/301 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++++ F G FT A + L S +SR+++ LE +G++L R R L LTE G Sbjct: 13 EFEQITAFLAAVEHGGFTTAGQALGRDGSILSRRVTALEKRLGVRLMERTTRRLALTEAG 72 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 H+ + L+ + + ++ G LRIA G+ + L FL YPD+ Sbjct: 73 EAFHQRMRGALNVLQAIEQDTTAAAASVRGTLRIALPATFGRMWIAPILPAFLAAYPDLV 132 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ +++ +D+ + D AIR+ + S L+ R+L A+P YL+ P Sbjct: 133 VETAFEDRYVDLVAESFDVAIRI-GTLTDSRLVARRLAPSRRMLCASPAYLQARGMPSRP 191 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H + F L + W L D+ L + S++Q V G GIA Sbjct: 192 ADLGQHACLGFSRLASHPL----WHLRDGDKTAAIRITGPLVTDDAQSLVQAAVSGVGIA 247 Query: 243 LLPDYIVKD---NPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARD 296 ++ D++ + LV ++ + S T+Y +P A K +AF ++I L A Sbjct: 248 MVSDWLAGPELCSGRLVPVLPAHPVENSETIYLVHPSARLVPAKTRAFGDWIASELNATP 307 Query: 297 W 297 W Sbjct: 308 W 308 >gi|167584508|ref|ZP_02376896.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 315 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YPD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHAQYPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y++ P Q+L Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRQHGAPTRPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L WL ++ P G +I +Q N+ S+ G GI + Sbjct: 186 GGHQCLT---LSTPAFPTHEWL--LEGPGGVEQIHVTGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + LVR++ D I VY YP R F+ K R W Sbjct: 241 LPVYSSIDALRDGTLVRVLPDHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|73537658|ref|YP_298025.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gi|72120995|gb|AAZ63181.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] Length = 323 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 11/297 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V +G F+ A Q +++S +SR+++ LE +G++L +R + LT G Sbjct: 26 DDLLLFIHVVDAGGFSAAERQTGIAKSRLSRRVATLERALGVRLLHRSGQVFGLTPVGEA 85 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E ++ + + +PSG + + T++ + + L L EF +P +Q+Q Sbjct: 86 VLAHAREAATHVDKIGALTRSAVAEPSGVIHLHTSMLIAETTLPPILAEFARAHPGVQVQ 145 Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L N+ +D++ + D IR P+ S ++ + T A P L+ P + Sbjct: 146 LTLSNRFVDLAEERLDLVIRAAVVPLASEDVVAVPVATSASIVVAHPSLLEADGPPARLD 205 Query: 185 ELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL + + G L P+ + ++ D+PI + V++ L+I + + G+G+A Sbjct: 206 ELAGYPCLAQGTLTNPR---PWQFIDADDKPIDIAVTPGIAVDNLLAIRELALRGAGMAQ 262 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y+ +D + LV +++ V + T+Y YP G A R F+ L W Sbjct: 263 LPSYLCQDAIDAGMLVPVLQGVRSRPATLYAMYP---SRRGMTSAVRVFLDLVRTRW 316 >gi|294341522|emb|CAZ89939.1| putative Bacterial regulatory protein, LysR [Thiomonas sp. 3As] Length = 301 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS T AA ++ + I R+I LE +G+KL R R ++LT++GS Sbjct: 6 QLETFVAVATKGSLTAAAHAEGVAPAIIGRRIDALEARLGVKLLLRTTRRISLTDEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +L+ + + VK SG LRI G+ + + FL +P++ + L Sbjct: 66 LEDCQRLLAELQNAEASVSAGGVKASGHLRITAPAGFGRRHIAPLIPGFLDQHPEVSLSL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+R+ + SSL+ +L AAP YL+ P + +L Sbjct: 126 DLTDRLVDLVNEGYDCAVRV-GDLADSSLVSLRLADNRRVCVAAPSYLQRHGTPATPSDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H + + + + W+ + I R++ + + Q+C+ G GIA Sbjct: 185 ARHQCLAYSSV---SSQPRGWMFQAEGEILHVRVAGRMDCTDGAVLHQWCLEGRGIAWRS 241 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++ED P ++ + + +L+ + +++ Sbjct: 242 LWEVGASLEQGKLVALLEDFAAPPNGIFAVFTQRKHQPLRLRLWLDYL 289 >gi|207723441|ref|YP_002253840.1| hypothetical protein RSMK00713 [Ralstonia solanacearum MolK2] gi|206588642|emb|CAQ35605.1| hypothetical protein RSMK00713 [Ralstonia solanacearum MolK2] Length = 300 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 12/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS T AA+ L +S++ ++R ++ +ET G +L +R R + LT G Sbjct: 9 VFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTPAGEATLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + + P G LR+A L Q +L + +L YPD I L++D Sbjct: 69 CRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPDTAIDLVVD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +++ + D A+R+ + +LI R L + AAP YL P +++L H Sbjct: 129 NRTVNLVEERIDLAVRITNDLD-PNLIARPLGSCESVVCAAPAYLAAHGTPRRVEDLAVH 187 Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 N +T FG + + E A P P L N ++++ G+GI + P Sbjct: 188 NCLTYSYFGKSLWRFTE-----ARTGEPAAVPVGGNLSANESMALLAAVKAGAGIGMQPA 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + LVR++ D + + ++ Y + L+A +F+ Sbjct: 243 FAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFL 289 >gi|254420174|ref|ZP_05033898.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] gi|196186351|gb|EDX81327.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] Length = 291 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 13/278 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS WD + F VA SF+ AA++L LS S++SR+I+ LE + +L R R + LT Sbjct: 1 MSSRWDGIDEFTAVAEQASFSTAAKRLGLSTSAVSREIARLEDRLQTRLLNRTTRRVELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + + + +Q P G LR+ ++ G+ + + F + Sbjct: 61 DAGRDFLARCRRLIDERDEALAAVQPDDSAPRGLLRMTCSVSYGERFVAPAVNRFARDHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ I+L LDN+ D+ D D AIR + S LI R+L + + AAP YL P Sbjct: 121 ELSIELDLDNRLRDLVGDGYDLAIRF-GHLTDSRLIARRLASRRLILCAAPAYLARRGAP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + EL H+L+T + E T RP G R C NS +++ + G G Sbjct: 180 RDLSELPAHDLLTGSSEHWRFSEAGR--ETSFRPQG--RWRC---NSGAAVLDAAIQGLG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDVIT----PSFTVYFCYP 274 + LPD+ V + P ++ ++T P V+ +P Sbjct: 233 LCQLPDFYVTE-PLRAGVLTALLTEHRPPDEGVWAVHP 269 >gi|163857450|ref|YP_001631748.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163261178|emb|CAP43480.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 317 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 25/252 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF V GS + AA++L +S++ +SR ++ LE VG++L +R R L+LT G+ Sbjct: 22 MQVFVEVVDRGSLSAAAQRLDMSRAMVSRYLAELEEWVGVRLLHRTTRRLSLTPAGAETL 81 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++ + E++ + T E P G+LR+ ++ G L + +F++ YP Sbjct: 82 PRCRRMLDLVGEMHESVATPDTE-------PRGELRMTVSLSFGAAQLGCAVADFVVRYP 134 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I L L ++ +++ + D A+R+ + +LI RKL AAP YL+ P Sbjct: 135 GTSIDLQLIDRTVNLVQERVDLAVRITNELD-PNLIARKLAPCRSVVCAAPSYLQAYGSP 193 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++L KHN +T +G + + D W VD P+ + N L + + Sbjct: 194 SRPEDLAKHNCLTHSHYGKSLWRFRRDNAW---VDVPVS----GNITANDALLLARAAAQ 246 Query: 238 GSGIALLPDYIV 249 GSGIALLP Y+ Sbjct: 247 GSGIALLPSYLA 258 >gi|163734371|ref|ZP_02141811.1| Transcriptional regulator, LysR family protein [Roseobacter litoralis Och 149] gi|161392379|gb|EDQ16708.1| Transcriptional regulator, LysR family protein [Roseobacter litoralis Och 149] Length = 303 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 139/300 (46%), Gaps = 11/300 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V GS + AA + + S++S+QI LE V +L R G++ T++G Sbjct: 6 QMLIFATVVEQGSISAAARSMGQTPSAVSKQIGLLEDHVHYRLLNRTRTGVSPTQEGQDF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + K + + + G L++A+T+ G++ L L F+ P++Q+ L Sbjct: 66 YEKCRAMAEKFKEAEAMIHTLDGVARGTLKVASTVAFGKSQLIPALPAFMEENPEVQVAL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L +++ID+ + D AI + ++ ++ R+++ AAP YL+ P S EL Sbjct: 126 DLTDREIDLQSEGFDVAICFAEQRKNPDIVVRRIMQSRRVLCAAPSYLERSGTPTSFAEL 185 Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 HN + G+ D + ++ G Q NS + + + G GIA LP Sbjct: 186 AHHNCLRIAGNSRRNAWSDGDSISC----DGFEAQGSFQGNSTDVVFRAALAGIGIARLP 241 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWKF 299 Y+ + LV++M + PS + +PE K +AF +F+ F + RD++ Sbjct: 242 CYMANRKFQSGELVQVMPEYAPPSTDIVVMFPEKRNLAPKTRAFVDFLVRRFREVRDYQM 301 >gi|209516804|ref|ZP_03265655.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209502767|gb|EEA02772.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 330 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 17/294 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----KL 66 F VA GSF A ++L + +S++SR + LE ++ +LF R R +LT +G Sbjct: 29 FLAVANEGSFAKAGDRLGIGRSAVSRNVQKLEAQLDARLFLRTTRSTSLTREGELFYQNC 88 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H + LE + EL+ P G LRI +T G+ ++ L+ F YPDI ++L Sbjct: 89 HPGVERIVQALEDMR-ELRNG--PPRGHLRICSTPGFGRKIVAPLLRGFRSRYPDIALEL 145 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+++ D D D R + ++ S ++ ++L+ + M A+P Y K P + +L Sbjct: 146 LLNDRPADFIADRVDVGFRDGR-MEDSEVVAKQLIPMQMIVCASPQYAKKHGVPRHVDDL 204 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALL 244 +H I F + +W VD I + PR N I+Q + G GIA L Sbjct: 205 AQHRCINFRSASGRVS---DWEFKVDGLIQKQLPRAQ-HTFNDVDLIVQAVLDGEGIAQL 260 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 P Y V D +L+ + Y CY +++ F +++ + R Sbjct: 261 PAYQVCDLLRREHLISCLAQYAPDDRGHYVCYLSRKHLPARIRVFIDYMAEQTR 314 >gi|163857641|ref|YP_001631939.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163261369|emb|CAP43671.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 289 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 15/292 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F + R G+ AA L + Q++ R+++ +E + +LF R RG T Sbjct: 1 MNWDDARIFLAIYRVGTLRGAAAVLQVDQATAGRRLAAIEASLQARLFLRTPRGYVPTAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + Q +LQ + SG +R+AT+ LG++ L K + +PDI Sbjct: 61 GELAFAAAERMEQAADQLQRQLQGLDARLSGVVRVATSDTLGRHYLLEAFKRVQVEHPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + +++ AD A+R +P + LI R L M YA+ Y++ EP Sbjct: 121 RVVLSTSTQITNLTRREADIAVRNVRP-DNPDLIHRHLARREMGLYASAAYVQEHGEPRL 179 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLG 238 H L+ + IP ++ F GEP + L+VNS L +++ V G Sbjct: 180 GTAFAGHRLVAYQRSAIPGRLDAF---------CGEPTRNGQVVLEVNSGLMMLEAVVRG 230 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI LP + P LVR+ S+ ++ L+ + +++A + I Sbjct: 231 LGIGELPVMLAGTYPALVRLWPQR-AESYDLWLVLHGDLRRSARVRAIADAI 281 >gi|33521052|gb|AAQ21353.1| Csw018 [uncultured bacterium] Length = 301 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 24/292 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A +G+FT AA Q L+ +++SR I LE + ++LF R R + LT+ G Sbjct: 13 IELFCLAADTGNFTAAASQAGLTPAAVSRAIGRLEDRLQVRLFVRSTRKIRLTDGGRAYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + L + +P+G++R++ LG + L F YP +Q+++ Sbjct: 73 EQCRQALAQINEAERALTGTQAEPAGRIRVSVPTTLGHCRILPALPGFRKRYPKVQVEVQ 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+++D + D D AIR R S L+ RKL+ + P YL+ P S +L Sbjct: 133 LSNRNVDFTTDEFDLAIRARAQ-ADSGLVARKLMDAELVVVGTPAYLRKAGVPKSPDDLA 191 Query: 188 KHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 KH I F L+P W LAT +C + L ++ Sbjct: 192 KHECIQF--LLPSTGLLVPWSFHHQGQDLELAT------SGGFTC--TDDLLGMVTLARH 241 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+G+ +IV+D+ L +++D S YP A +++AF Sbjct: 242 GAGLLQTYRFIVEDDLAQGRLREVLKDFGGRSRPFSIIYPGARHMPLRVRAF 293 >gi|311109094|ref|YP_003981947.1| HTH-type transcriptional regulator YafC 2 [Achromobacter xylosoxidans A8] gi|310763783|gb|ADP19232.1| uncharacterized HTH-type transcriptional regulator YafC 2 [Achromobacter xylosoxidans A8] Length = 293 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 84/311 (27%), Positives = 149/311 (47%), Gaps = 35/311 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + D LR+F V +GS + AAE L + S +SR +S LE E+G+ L R R + LT Sbjct: 1 MSLNSDALRLFLGVVDAGSLSAAAELLGHTASGVSRGLSRLEEELGVTLLNRTTRRMDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + L+ + ++ +P+G+LR+ ++ + + + + EF YP Sbjct: 61 EEGKHFLPKARHIVASLDEAEDCMRMVHQRPAGRLRVDASVPVMLHCVVPLVAEFRREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L +++ +D+ D A+R+ P+ S+L R L A+P Y+ P Sbjct: 121 AITLELTSNDRIVDLMEHRTDVALRM-GPLTDSTLHARPLRPSPRWVMASPDYVARRGAP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--------NWLATVDRPIGEPRISCLQVNSYLSIM 232 ++++L H ++ F P+ + + ++LA + L +S + Sbjct: 180 ETVEDLAAHEVLGFTQ--PESLNVWPLRHAGGSSYLA----------MPTLATSSGETQR 227 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYFCYPEALKNTGKLKA 285 Q V G GIA L D++V+++ LV++ME D + P VY+ +NT + Sbjct: 228 QLAVRGVGIACLSDFVVREDVKAGRLVKLMEAAHTDYLQPMHAVYY------RNTQLSRR 281 Query: 286 FRNFI-FLKAR 295 F+ FL AR Sbjct: 282 IACFLDFLAAR 292 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073587|gb|ADJ62986.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 142/294 (48%), Gaps = 19/294 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F VVAR SF +A ++ S + IS++I+ LE +G++LF+R R + +TE+G Sbjct: 8 EDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEEGGN 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +H + +E + + P G L+I+T+ LG+ ++ L F +P+++IQ Sbjct: 68 VHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKIQ 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ID+ + D IR+ L ++++ A+P YLK P + Sbjct: 128 LELVDRQIDLVNEGIDLDIRVGAG-HEPHLFSKRILPSQRVLCASPAYLKKHGLPADLAA 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L +H + + + N + R +G + ++V+ L+ I Q+ V G Sbjct: 187 LRQHQCLV--------IRERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGH 238 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + V D+ LVR++ + + YP LKN+ K++ F+ Sbjct: 239 GIILRSAWDVADSLKRGRLVRVLPQYYQEA-DLCAVYPLQLKNSAKVRECVRFL 291 >gi|227329410|ref|ZP_03833434.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 293 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V +GSF+ A+ +L + Q ++S+ I LE ++ L R RGLT TE G + Sbjct: 7 LETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLATPLLLRSTRGLTPTEAGQNFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L Q + S SG+LRI + + L+ L EF+ +P + I +I Sbjct: 67 EQIAPALKVLGDAQEHVVSGSTALSGRLRIGAPVTFARQLIIPRLHEFMAEHPQLNIDVI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID+ + D A+RL + ++ SSLI ++L + M A P Y P S L Sbjct: 127 LDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGVPDSPDVLA 185 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H + + G+ + + N T P G R+S + + + G G+ + Sbjct: 186 AHPAVIYLQGERTDRWIFSRNGTQTTVFPNGRIRVSAAE-----GVRAAVLSGVGLIVAS 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ ++ +V ++ ++ YP + + + F +F+ Sbjct: 241 EWMFAPELESGQVVTALDSWSLGKMDLWAVYPGGRMTSARARIFTDFV 288 >gi|156936316|ref|YP_001440232.1| hypothetical protein ESA_04216 [Cronobacter sakazakii ATCC BAA-894] gi|156534570|gb|ABU79396.1| hypothetical protein ESA_04216 [Cronobacter sakazakii ATCC BAA-894] Length = 299 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 11/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SFT AAE L L + S+SRQ+ LE+ +G +L +R R + LT+ G + Sbjct: 7 MRLFVRVAELESFTRAAETLSLPKGSVSRQVQALESALGTRLLHRTTRRVHLTQDGQVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ SG+LR+ + + QN++ L EFL YP I ++L Sbjct: 67 ERARDLLANLDELDGLFLHDPASVSGRLRVDMPVAVAQNVVIPRLPEFLHHYPGIALELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ + ++ S L+ R L + A+P YL P ++ +L Sbjct: 127 SSDRLVDVVREGFDCVVRVGQ-LKDSGLVARPLGKLSQVNCASPDYLARFGIPETLDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244 H L+ + + F + R G P L VNS + C G GI + Sbjct: 186 SHALVHYTPTLGTRPAGFE----IGRESGSEWIPTGGVLTVNSTETYQAACFAGLGIIQV 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P V++ + LV ++ V YP Sbjct: 242 PRIGVREALRSGKLVEVLPQYRAAPMPVSLIYP 274 >gi|312963010|ref|ZP_07777496.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311282779|gb|EFQ61374.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 298 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 129/262 (49%), Gaps = 16/262 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L++F V GS + AAEQ+ + S++SR +S LE ++ L R R + LTE+G Sbjct: 6 DELQIFVSVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLTEEGKY 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ + L P+G+LRI + + + + EF LYPDIQ++ Sbjct: 66 FFEQAKLILAQMDELEERLSSRQKNPAGRLRINAAVPFMLHGIVPYIAEFRSLYPDIQLE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L D+ ID+ D AIR+ + S+L R L +H A+P YLK P ++ + Sbjct: 126 LNSDDLIIDLLEQSTDIAIRI-GALADSTLHARSLGCTPLHILASPDYLKQYGAPQTVAD 184 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L KH L+ F E N W L V DR + EP I+ +S ++ Q + G GI Sbjct: 185 LAKHTLLGFTQ-----TETLNHWPLRHVEGDRWLIEPGIA---ASSGETLRQLALQGQGI 236 Query: 242 ALLPDYIVK---DNPNLVRIME 260 L +++ D LV ++E Sbjct: 237 CCLSNFMTSADIDAGRLVPVLE 258 >gi|146308176|ref|YP_001188641.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576377|gb|ABP85909.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 294 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 20/257 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ L+ F VARSGS T AA +L +SQS++SR+I+ LE +G LF RH G +T++ Sbjct: 1 MDWNDLKYFLAVARSGSLTQAATELAVSQSTVSRRITELEQSIGTILFQRHQTGYFVTDE 60 Query: 63 GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G +L RV + LE L + KP+G +R+AT+ +L +L+ L F Sbjct: 61 GGELLCHAERVEESIM-ALERGAAGLDK---KPAGSVRLATSENLATDLIIPALPAFRER 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP I +++I +++ AD A+R+ +P +L R++ + Y + YL+ R Sbjct: 117 YPGICLEIITSTVTAELNRREADIALRVVRP-SRGNLKVRRIGHMTYSVYGSRGYLE--R 173 Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236 P + + L +LIT+ D M WLA P V S L V Sbjct: 174 HPHIDGEPLGGRHLITWDD-SHGFMPAAAWLARE-----HPGCKVALVTSSLPTQIAAVR 227 Query: 237 LGSGIALLPDYI-VKDN 252 G G+A++PD++ VK++ Sbjct: 228 AGLGLAVIPDFLAVKED 244 >gi|226945169|ref|YP_002800242.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226720096|gb|ACO79267.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 297 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/281 (26%), Positives = 132/281 (46%), Gaps = 7/281 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F + A SGS+ AAE+L LS +++ ++ LE +G +L R R +LTE GS + Sbjct: 9 AFVMAAESGSYASAAERLGLSPQMVAKHVAALERRLGARLLNRTTRRQSLTELGSAYYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + Q + P GKL+I+ + G L + EFL +P+++I L L Sbjct: 69 CKHILSEAQAADSLAQIMNDTPRGKLKISAPVTFGSYSLMPFVTEFLRQHPEVEIDLHLT 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + + R+ P+ +SSL + L + A AAP YL + P +L H Sbjct: 129 DRFVDLVEEGYEVTFRI-GPLAASSLTAKPLAPYRLVACAAPSYLTDRGVPQIPGDLKNH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + D W+ + + + LQVN +++ + G GI L P+ Sbjct: 188 ECLGYAYWSRPA--DREWVFCKGSAVERVQVVGRLQVNESKALLSAALDGFGIVLGPEDF 245 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ + LVR++ D PS ++ Y + T KL+ F Sbjct: 246 LEPALRSGELVRLLADYEAPSRQMHLLYTANRQKTAKLRRF 286 >gi|152972380|ref|YP_001337526.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957229|gb|ABR79259.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 299 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 21/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE L L + S+SRQI LE+ +G++L +R R + LT+ G + Sbjct: 7 MQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SG+LR+ + + ++ +L FL YP I+++L Sbjct: 67 ERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + A+P YL P S+++L Sbjct: 127 SSDRQVDVIREGFDCVVRV-GALKDSGLIARPLGKLTQINCASPDYLARFGYPQSLEDLA 185 Query: 188 KHNLITFGDLI---PKCME-----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H LI + + P E W+ T L VNS + C+ G Sbjct: 186 DHALIHYASTLGVRPPGFEVMIDGAVRWVKTG---------GILTVNSTETYQAACIAGL 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P V++ +L+ I+ V YP + ++ F ++ Sbjct: 237 GIIQVPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWL 290 >gi|119897452|ref|YP_932665.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119669865|emb|CAL93778.1| putative transcriptional regulator,LysR family [Azoarcus sp. BH72] Length = 321 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 9/271 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ GLE +G++L R R +TLT +GS Sbjct: 6 QIETFVAVASRGSLSAAARAEGVTPAVIGRRLDGLEARLGVRLLVRTTRSITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VKPSG LR++ G+ + ++EFLL PD+ L Sbjct: 66 LEDCQRILNDLSNAEASVSLGGVKPSGHLRVSAPAGFGRRHVAPLVREFLLANPDVSCSL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+R+ + SSL+ KL A+P YL P + ++L Sbjct: 126 DLSDRLVDLVNEGLDCAVRI-GDMADSSLVSVKLADNRRVVVASPDYLARHGVPRTPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T D A + G R+ C N + ++ + G G+A Sbjct: 185 PRHVCLTLVQQRGWQFADGRGGAVSAKVAG--RLEC---NDGAVLHEWALAGQGLAWRSL 239 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 + V ++ LV ++++ +Y +P Sbjct: 240 WEVSEDLAAGRLVSVLDEFAARPTGIYAVFP 270 >gi|298292745|ref|YP_003694684.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296929256|gb|ADH90065.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 286 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 11/284 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W +R+F +ARSG+ AA LHLS ++ R++ LE G LF R A G LTE+ Sbjct: 1 MEWSDVRIFLAIARSGTLGAAARTLHLSHPTVGRRLRALEQATGHTLFQRTADGFVLTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + ++ + L G LRI++ G +L + ++ YP + Sbjct: 61 GNAVLPLAEQMEEGALAMERRLAGQEQNLQGTLRISSADWFGAYVLPPIIADYAKTYPHV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+++ + ++ AD A R+ P S ++QR+L+ + AY A EP+ Sbjct: 121 DIEVLTGTRLFSLAQREADIAFRI-VPFDSPDVVQRRLIRLAYGAYVA----AGSPEPV- 174 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + LIT D D WL T P P L+ N+ + C G GI Sbjct: 175 YGDGAGFRLITH-DTSTGQFPDIAWL-TESFPNARP---ILRSNNRNVQGRMCSQGVGIC 229 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +LP + P L R+ P ++ Y ++ +L+AF Sbjct: 230 VLPQVVGNQMPALRRLNLPAEPPGRDIWMGYHRDIRRLQRLRAF 273 >gi|218507139|ref|ZP_03505017.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Brasil 5] Length = 188 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 95/185 (51%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F VAR SFT AA +L +SQS++S I GLE +G++L R R ++ TE G + Sbjct: 3 DDLIAFLAVAREQSFTKAAAKLGVSQSALSHTIRGLEARLGLRLLTRTTRSVSPTEAGER 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E++ + L KP+G +RI ++L L+ FL YPD++++ Sbjct: 63 LLVSIGPRFDEIESSLVALSAFRDKPAGTIRINAGEHAANSVLWPALERFLPEYPDVRVE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+D DI + D +RL + + + R + M AP Y +PL+ + Sbjct: 123 IIVDYGLTDIVAERYDAGVRLGEQVAKDMVAVRIGPDMRMAVVGAPTYFDARPKPLTPHD 182 Query: 186 LDKHN 190 L HN Sbjct: 183 LTDHN 187 >gi|254449716|ref|ZP_05063153.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198264122|gb|EDY88392.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 300 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 6/290 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+K R F V A GS + AA L ++Q ++ RQ+ GLE E+GI LF R RGLTLT Sbjct: 10 VKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLTLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L ++ + S G + I+ + LL + + + P Sbjct: 70 PSGLELLEHVRDMGEAAGRVSMTALGQSQALEGTICISASETYAAVLLPPIIAKLRKMEP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ+++++ N D+ AD AIR +P + LI +K+ YA P Y+ P Sbjct: 130 GIQVEIVVANHASDLRRREADIAIRNFRPTE-PDLIAKKIGDADAVLYATPDYIAEIGNP 188 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H D ++ N L P L SYL + + G+ Sbjct: 189 TKPYDL-RHAEFVNMDHSGMMLKGLNTLGLGLTGANFP----LLTESYLVMWELVRQGAA 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +L +I +P + R++ D+ F ++ L + +++ +F+ Sbjct: 244 IGILDAHIGDADPVVRRVLPDLEPLVFPIWLVSHRQLTTSRRIRMVYDFL 293 >gi|58581747|ref|YP_200763.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623651|ref|YP_451023.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576832|ref|YP_001913761.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A] gi|188577025|ref|YP_001913954.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426341|gb|AAW75378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367591|dbj|BAE68749.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521284|gb|ACD59229.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521477|gb|ACD59422.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A] Length = 337 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 22/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 8 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 68 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R+ + L+ + +L Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGERRVD---LQPRLAGFDFPLLQSMAR 238 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 239 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 292 >gi|54309915|ref|YP_130935.1| transcriptional regulator [Photobacterium profundum SS9] gi|46914354|emb|CAG21133.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 299 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 14/297 (4%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M +++L+ VF + GSF+ AA QL LS+ +S + LE +G+ L R R + Sbjct: 1 MDVSFEQLKSMVVFAKIVEQGSFSAAARQLGLSRGVVSYHLKKLEDHIGMPLLNRTTRSI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT+ G + + + + ++++ +P GKL I+ +++ + + L F Sbjct: 61 SLTDAGQRYFQRCKRISEEAAAANLQIENLREEPEGKLTISAPVNISMHTIVPALNTFKT 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYP I+I L L + ++I + D AIR P+ S L +KL+T+ +P Y Sbjct: 121 LYPKIEIDLNLTDDIVNIIQEGVDLAIR-GAPLADSGLYAKKLMTMKNILCGSPSYFNQH 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + EL H + + K L R + NS + + V Sbjct: 180 GIPRTPAELANHEWVVY-----KKTSKIQTLTKGTRSYNVKMQGSITTNSASARTAFVVG 234 Query: 238 GSGIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP Y ++K L I+ED T+Y YP ++ K++ +++ Sbjct: 235 GHGVGRLPIYDALPLIKAG-QLTPILEDYALSDITIYGVYPPRAADSKKMRLLLDYL 290 >gi|113968592|ref|YP_732385.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|113883276|gb|ABI37328.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] Length = 305 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 145/293 (49%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SFT A+ L LS++ +S ++ ET +G +L R R + LT+ G + Sbjct: 8 MQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCY 67 Query: 68 RVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + Y +LE+ +LQ + V SG+LR+ + + +NL+ +L EF+ YP I++ Sbjct: 68 ERCKNLLTDYQELESL-FQLQAAQV--SGRLRVDMSTGIARNLVLPHLPEFIEQYPQIEL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L ++ +DI + DC IR+ +Q +I +K+ M +P Y++ +P S++ Sbjct: 125 ELSSTDRKVDIVAEGFDCVIRV-GSVQQEGVIAKKIGHFKMLNCVSPSYIEKYGKPSSLE 183 Query: 185 ELDK-HNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL + H LI + + F +L+ + + P++ + VN+ + C+ G G Sbjct: 184 ELSQWHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKL--ITVNNADAYSAACLAGLG 241 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I P+ V L+ I+ D PS V YP + +L+ F ++ Sbjct: 242 IIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWL 294 >gi|285018474|ref|YP_003376185.1| LysR family transcriptional regulator [Xanthomonas albilineans GPE PC73] gi|283473692|emb|CBA16195.1| putative transcriptional regulator, lysr family transcription regulator protein [Xanthomonas albilineans] Length = 311 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LE+++G++L R R +T+ G Sbjct: 3 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLESDLGVRLLQRSTRRFAVTDLG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +HR + + + + + SV+P G +R++ + L Q L L FL YP ++ Sbjct: 63 MNVHRHAQMMLAEAQAAREVVDRLSVEPRGLVRVSVPVSLAQMQLPKLLPMFLDRYPKVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +DI + D A+R+R + SL+ R + A+P YL P Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKE 182 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL H ++ D + + E V R +PR++ S+++ G G+ Sbjct: 183 PEELASHVTLSISEDEVRQHWELHGPAGEVRRVDLQPRVAGFDFPLLQSMVKD---GFGV 239 Query: 242 ALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 LLP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 240 TLLPETVCAEA---VRNGELEVVLPKWSLPQGICHAVFASRRGLLPAVRVFI 288 >gi|260553964|ref|ZP_05826230.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260404918|gb|EEW98422.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 310 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 13/255 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LR F V + +F++ A + +S S ISR I LE +G +LFYR+ R +T TE Sbjct: 6 SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + Q LQ+ +++PSG +RI + GQ + L YP Sbjct: 66 SGKLFFEYAKKITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+LI ++ ID + D R+ + SS R T H A+P Y+ P Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYIAKYGTPD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 EL++H + + K E N WL V +P E P L N+ S+M + Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237 Query: 237 LGSGIALLPDYIVKD 251 G GI L PD+++ + Sbjct: 238 HGMGIVLFPDWLIGE 252 >gi|91787738|ref|YP_548690.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gi|91696963|gb|ABE43792.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 300 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/311 (26%), Positives = 147/311 (47%), Gaps = 30/311 (9%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR F V ++GSF AAE+L S++++SR + LE + +L R R +LTE Sbjct: 2 DQLRQIETFVAVVQNGSFVKAAEKLGDSKAAVSRLVLELEARLDTRLLNRTTRKQSLTES 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ ++ L + S+ +P G+LRI + G L FL +PD+ Sbjct: 62 GADYFERCRKILDDLAEANLAASASTARPVGRLRINAPVSFGNLHLAPLWGGFLQRHPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181 + + L ++ +D+ D D AIR+ + + +SSLI R+L + + A+P YLK R+ Sbjct: 122 TLDVTLSDRQVDLVEDGYDLAIRIAR-LLNSSLISRQLASTRLVLCASPAYLKLKRQARL 180 Query: 182 -SIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIM 232 +I+++ H +I + GD +W + P G + + L+ NS + + Sbjct: 181 STIEDIAAHPVIAYSYWSGGD---------SW--AFEGPEGPVEVLTQARLRSNSGDTCL 229 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G G+ L P +IV + LV ++ P+ ++ YP + K++ + Sbjct: 230 AAALAGQGLILQPTFIVGADLKAGRLVEVLPHYRAPTLAIHAVYPSRQHLSVKVRRMVEY 289 Query: 290 I--FLKARDWK 298 + K DW+ Sbjct: 290 LAGAFKKPDWE 300 >gi|300714723|ref|YP_003739526.1| O-succinylbenzoate synthase [Erwinia billingiae Eb661] gi|299060559|emb|CAX57666.1| O-succinylbenzoate synthase [Erwinia billingiae Eb661] Length = 299 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 129/287 (44%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA SFT AA+ L L + S+SRQ+ LE +G +L +R R + LT+ G + Sbjct: 7 MQVFVRVAELQSFTRAADSLGLPKGSLSRQLQALENSMGTRLLHRTTRRVQLTQDGLVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V LE Q SG+LR+ ++ L N + L +FL YP I+++L Sbjct: 67 ERCRDVLATLEEMDSLFQHDPTTLSGRLRVDMSVSLASNFILPLLPQFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC IR + S LI R L + A+P YL+ P ++ +L Sbjct: 127 SSDRRVDVIREGFDCVIR-GGTLGDSGLIARPLGKMTQINCASPDYLERFGTPQTLDDLG 185 Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H ++ + + + F W R I + VN+ ++ C+ G GI P Sbjct: 186 QHAMVHYSQQLGVHPQGFEYWDGKTTRFIQTG--GAVTVNNTVTYQSACLSGLGIIQAPL 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +K N LV ++ + YP ++ F +I Sbjct: 244 AGMKASLANKTLVEVLPHFRAEPMPISLIYPHRRNLARRVHVFMEWI 290 >gi|209522430|ref|ZP_03271035.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209497133|gb|EDZ97383.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 312 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 134/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V SGSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVESGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + + YPD+ I+L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVSRYQERYPDVHIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ L + S L+ ++L + A A+P YL+ P +L Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLERRGVPQKPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H + ++ W T D P GE + + QVN ++ G G+A Sbjct: 186 AQHTCL---QMVSPISPPDKW--TFDGPNGEEIVPLGATTFQVNVAEAMAVAVSEGMGVA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L+P Y + LV ++ + + +Y YP K++ + F+ Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQQMNLYALYPSRQYLDAKIRTWVEFL 291 >gi|307130652|ref|YP_003882668.1| LysR family transcriptional regulator [Dickeya dadantii 3937] gi|306528181|gb|ADM98111.1| Transcriptional regulator, LysR family, in glycolate utilization operon [Dickeya dadantii 3937] Length = 304 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 138/279 (49%), Gaps = 15/279 (5%) Query: 1 MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M F D+L + F A +GSF+ A L L Q ++SR ++ LE + +L +R R L Sbjct: 1 MDFRMDRLLLMTCFVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT +G + + + +E ++ +E +V P+G LR+A L L ++ +FL Sbjct: 61 SLTPEGERYYLEARRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLE 119 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP++ ++L ++++ I++ + A+ AIR+ ++ S++ R+L A+ YL Sbjct: 120 RYPELTLELQINDRYINLVDEGAELAIRIGH-LEDSAMRARRLGMYERVCVASNKYLAKH 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + ++L KH+ + + L F + I P L+VNS ++ ++ Sbjct: 179 GTPNTPEDLKKHDCLIYTLLTTGATWRF-------QDINVPISGRLRVNSPEAVQKFVNA 231 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 G GIA P+++ + +N NL ++ D P + Y Sbjct: 232 GVGIAQGPEWLFEEGLENGNLQLLLTDYTAPPVPIQAVY 270 >gi|222147135|ref|YP_002548092.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734125|gb|ACM35088.1| transcriptional regulator [Agrobacterium vitis S4] Length = 296 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 134/290 (46%), Gaps = 13/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L V VA + SF AAE+L ++ S++S +S LE +G++L R R + TE+G +L Sbjct: 8 QLAVLATVAETSSFRKAAEELGIAPSAVSHAVSALEASLGVRLLARTTRSVAPTEEGRQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + T L E+ P+G LRI ++L+ L +FL LYPDIQ++L Sbjct: 68 LQKLAPALADIGTALETLAENKSNPAGPLRITMPALAAEDLIVPRLGDFLGLYPDIQLEL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 I +++ DI D +RL + +++ + + I AP Y + P+ +L Sbjct: 128 ITNDQFEDIVEKGFDAGLRLGEHLETDMVAVKASGPISGTIIGAPSYFERHPLPVHPHDL 187 Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H I + G + +E VD P L + I + G G+A Sbjct: 188 MEHRCIRRRFSSGRIYRWELEKHGKQIAVDVP------DVLTLADQRLIRLAALKGVGLA 241 Query: 243 LLPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + D V KD L+R++ED P Y YP + L+AF +F Sbjct: 242 FVFDQRVDKDIREGRLIRVLEDWCPPFDGFYIYYPTRRQMRPALRAFVDF 291 >gi|323139326|ref|ZP_08074378.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC 49242] gi|322395392|gb|EFX97941.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC 49242] Length = 295 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 10/294 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS +L VF V G F+ AA ++LSQ S+SR + LET +G+KL R R L LT Sbjct: 1 MSDRLQELAVFIRVGERGGFSRAARDMNLSQPSVSRIVGELETRLGVKLLLRSTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + E+ LE + + G +R+A + G + LKEFL +P Sbjct: 61 PAGEQFLARAREILADLENAE-DAARGVDSLRGTIRLAVPVIYGMRRIIPRLKEFLDRHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L + + D+ + D A+R+ K ++ S RKL T+ AAP YL+ P Sbjct: 120 QLRMELRVSDAHQDLVAEGVDIAVRVGK-LRDSPFGARKLATLQRLLAAAPSYLETRGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L +H+ I FG P + W+ D + + V+S ++ + G Sbjct: 179 RTPADLAQHDCI-FG---PNSLGLETWIFRRRDTVVSVEVAGRIHVDSGPGVLASAISGL 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA++P + ++ + LV ++ + V+ +P + K++A ++ Sbjct: 235 GIAVVPSAMGEEEIRSGALVPLLTNYTLEPVDVHAIFPGGPHPSPKVRALTEYL 288 >gi|194434892|ref|ZP_03067138.1| transcriptional activator AaeR [Shigella dysenteriae 1012] gi|194416868|gb|EDX32991.1| transcriptional activator AaeR [Shigella dysenteriae 1012] gi|332086509|gb|EGI91656.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae 155-74] Length = 309 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRHLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E RPI + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRPIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240 >gi|167646347|ref|YP_001684010.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167348777|gb|ABZ71512.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 289 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 19/275 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+W L +F +AR G+ AA +L SQ ++ R++ LE G LF R A G LT++ Sbjct: 4 FEWSDLPIFLAIAREGTLGAAARRLGQSQPTMGRRLKALEIATGAALFQRTADGFVLTDE 63 Query: 63 GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G L R+ +E + T L G LR++ + G+ LL L E L Sbjct: 64 GQALLAHAERMETESLALMRT----LSGRDAALEGSLRVSCSDWFGRVLLAPVLAELAQL 119 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + ++ + D + ++ AD +R+ P + +I R+LVTI Y P Sbjct: 120 HPGVVVETLTDPRIYSLARREADLVVRM-VPFNEAEVIARRLVTISYGLYGRPDAAAA-- 176 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 I E + H L+ D M D W + R + RI+ + NS Q C LG Sbjct: 177 ---PIGEGEDHALVVM-DTAFGGMPDVAW---ITRRLPRARIAS-RSNSREVQAQLCALG 228 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273 +G+A+LP + + RI + PS + Y Sbjct: 229 AGLAVLPRPLGDAAEGIERIELEEDPPSRIQWMGY 263 >gi|56695772|ref|YP_166123.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56677509|gb|AAV94175.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3] Length = 307 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 8/268 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE + ++LF R R LT TEQG Sbjct: 5 DNIRTFVRVYELGSMSAAGRDLRISPAVTSARISQLEDHLNVRLFQRTTRNLTPTEQGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V ++ + ++ + P G L +A + LG+ LL N+ +FL YP+I I+ Sbjct: 65 FYPGAVAVLDAVDEAEAQVMHLTEAPRGSLFVAAPLGLGRRLLAPNVPDFLAQYPEIDIR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ID++ + D A L +P + S+L RK+ AAP Y+K P + Q+ Sbjct: 125 LRLTDRTIDLTTEGLDLAFFLGQP-EDSNLRIRKIADCRRVLCAAPDYVKRRGLPATGQD 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H + P E F W L T + P + + + + + G GIA Sbjct: 184 LITGRHECLNL--RFPGATE-FQWLLQTAEGPRRFAVSGRHECDDGDVLTDWALTGQGIA 240 Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTV 269 + P + V ++ R++ + TP TV Sbjct: 241 MKPVFEVAEHLKAGRLVPVAVDTPPVTV 268 >gi|83748877|ref|ZP_00945888.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|83724443|gb|EAP71610.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 336 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 9/274 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF +G F AAE+L LS+S++ + I+ LET +G++LF+R R LTE G Sbjct: 10 DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + L+ + +G+LR+ + G+ + L +F +P ++++ Sbjct: 70 YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLELE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D IR +++ L R L T AAP YLK EP +I+ Sbjct: 130 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIET 189 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H+++ + + W L D + E R+ S L+ + V G GIA Sbjct: 190 LATHDVLIHW----RTGHPYPWLLPGADGRLTEVRLASRLRFDDLEVTADAAVAGMGIAW 245 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LP ++V+D LV + E S + +P Sbjct: 246 LPHWLVRDRIQAGALVALWEKRPAASMDSHAIWP 279 >gi|330950551|gb|EGH50811.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7] Length = 303 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 136/306 (44%), Gaps = 13/306 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M FD + + +F V RSGSF AA L + ++ISR++ LE ++ +L R R L LT Sbjct: 1 MVFDLNDVALFVQVVRSGSFAQAARHLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60 Query: 61 EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + G + R V +E + +L +P G +RIA D + +FL Y Sbjct: 61 QAGEDFYGRCVGAVDGVMEAAE-QLASGRDEPGGLVRIAAMADFFDFFSMDWVADFLARY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178 P +Q++ +L + D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDESHDTMVASPTYIAAYG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 P S+Q L H ++ W L D + E I+ N+ ++ + + Sbjct: 179 MPDSLQSLHSHYCVSAAHRGGVTA----WRLLGPDAKMHEVHIASRFNANTAQALRKATL 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GIALLP +++ + LV ++ S ++ YP + AF + K Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLAQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294 Query: 294 ARDWKF 299 RD F Sbjct: 295 LRDKAF 300 >gi|325276470|ref|ZP_08142232.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324098392|gb|EGB96476.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 304 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 134/297 (45%), Gaps = 14/297 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V GS + AA+ L LS+ +SR ++ LE VG +L R R L+LT G + Sbjct: 5 NAMRVFVTVVDLGSQSAAADHLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTAAGQE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + Q +Q+ P G LRI+ + GQ L + ++ YP ++++ Sbjct: 65 TLPRCRHLLDLAGELQAAVQQPDDAPKGALRISVSTSFGQAQLVDAIAAYVQRYPGVKVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + D AIR + +LI R+L AAP YL P ++E Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLSVCRSVVCAAPAYLHEHGTPQQVEE 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +HN +T FG + F+ + + P + N +++ + + G+GIA Sbjct: 184 LSRHNCLTHAYFG----HSLWHFD---VAGQQVSVPVAGNISANEAMTLQKAALAGAGIA 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +LP Y D LVR++ + Y L++ +F+ + +D Sbjct: 237 MLPTYQAADALRKGELVRLLAHARPRELNLNAVYTSRKHMPATLRSMLDFLVERFKD 293 >gi|322831699|ref|YP_004211726.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321166900|gb|ADW72599.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 297 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 128/274 (46%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F +VAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLMVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ LE L + + SG +R++ +NL+ LK FL YP+I Sbjct: 65 ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARNLVWPKLKPFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN ++I D IRL + + + R + M AP Y P + Sbjct: 125 LELVVDNGFVNIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ + N + + G GIA Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVRVEGQVTFNLQAERIDAALSGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ V D + L++I++D PSF Y+ Y Sbjct: 243 CIPEDRVLDYIKSGELIQILQD-WCPSFPGYYLY 275 >gi|253689059|ref|YP_003018249.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755637|gb|ACT13713.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 310 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 96/185 (51%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F A+ GSFT AAE+L L++S++ + +S LE +G+KLF R R L+LT G + Sbjct: 17 INAFVTTAQQGSFTAAAERLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGERFL 76 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 LE + EL +P+G+LR+ G+ + L YP++ + + Sbjct: 77 ASCQSAMDILEQAEAELTSHLCQPAGRLRVDLPAAFGRQRILPILLNITRRYPELALTVT 136 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D D D IR+ + SS L+ R+L T + A+P YL N EP+S++ L Sbjct: 137 FSERFVDPIEDGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLNQGEPVSVEALS 196 Query: 188 KHNLI 192 +H+ + Sbjct: 197 QHHCV 201 >gi|188583418|ref|YP_001926863.1| LysR family transcriptional regulator [Methylobacterium populi BJ001] gi|179346916|gb|ACB82328.1| transcriptional regulator, LysR family [Methylobacterium populi BJ001] Length = 337 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 136/293 (46%), Gaps = 20/293 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF + R+GS + AA++L +S + +S+++ LE ++G++L R R L LTE+G + Sbjct: 11 DDLRVFDAIVRAGSLSRAAQELDVSLTLVSKRLKRLEAQLGVRLLQRTTRQLGLTEEGQE 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ Q + SG +R+ T Q + L FL LYPDI +Q Sbjct: 71 F---LGRCRLALDAIQAAEEVCGDGHSGIVRVTATAAFAQRQIAPRLHRFLALYPDISVQ 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ + +D+ D A+R + P+ S LI R LV A+P YL P + Sbjct: 128 ILTSDDVLDLVERRIDLAMR-QAPLADSRLIARPLVPDARVLCASPAYLAEAGTPRDPID 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS----GI 241 L KH +T GD P + +V+ +S V + + C +G+ GI Sbjct: 187 LTKHACLTVGDPPPAQWRLWRGEESVE-------VSIRSVAGG-NDGEICHVGALADLGI 238 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFI 290 A+ + V D+ LVRI+ + + V YP L +++AF F+ Sbjct: 239 AMKAAWDVVDDVRAGCLVRILPEWWGGTDRWVRIVYPARLHQPRRVRAFVAFM 291 >gi|207743736|ref|YP_002260128.1| hypothetical protein RSIPO_01917 [Ralstonia solanacearum IPO1609] gi|206595135|emb|CAQ62062.1| hypothetical protein RSIPO_01917 [Ralstonia solanacearum IPO1609] Length = 328 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 9/274 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF +G F AAE+L LS+S++ + I+ LET +G++LF+R R LTE G Sbjct: 2 DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + L+ + +G+LR+ + G+ + L +F +P ++++ Sbjct: 62 YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLELE 121 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D IR +++ L R L T AAP YLK EP +I+ Sbjct: 122 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIET 181 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L H+++ + + W L D + E R++ L+ + V G GIA Sbjct: 182 LATHDVLIHW----RTGHPYPWLLPGADGRLTEVRLASRLRFDDLEVTADAAVAGMGIAW 237 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LP ++V+D LV + E S + +P Sbjct: 238 LPHWLVRDRIQAGALVALWEKRPAASMDSHAIWP 271 >gi|148553181|ref|YP_001260763.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498371|gb|ABQ66625.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 296 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 128/283 (45%), Gaps = 15/283 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F + +GS + A +L +S + +S++++ LE +G L +R R L LT+ G + Sbjct: 7 LFVTIVEAGSLSAAGRRLRISPAMVSKRLARLEARLGATLVHRTTRRLLLTDVGQGFYED 66 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S + + T + + +P G+LR++ G+ + L FL YP I++ L LD Sbjct: 67 ASHILDAVRTAEARVAGRVGQPGGRLRVSAPTSFGRMHVAPYLHAFLDRYPRIELSLDLD 126 Query: 130 NKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + +D+ + D AIR+ +P SL+ L AAP YL P ++ +L + Sbjct: 127 DGFVDLLGERIDVAIRIATRP--EGSLVAHHLAENRRILCAAPAYLAAQGTPATLADLSR 184 Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H L+ F W L D P+G +S ++ NS + V G GIAL + Sbjct: 185 HRLLA-------ADHQFPWRLEGSDGPVGLDGVSAVRTNSSEVARELTVAGLGIALRSTW 237 Query: 248 IVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAF 286 V + +LVRI+ ++ + +Y P AF Sbjct: 238 DVGPALRDGSLVRILPEISGATDVAIYAVQPRGTAGAPNAGAF 280 >gi|320181667|gb|EFW56582.1| Transcriptional regulator, LysR family [Shigella boydii ATCC 9905] Length = 297 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 17/279 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F +VAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLLVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVL 237 EL H I +P ++W +R E + ++V+ L+ + + Sbjct: 185 HELQNHRCINM--RLPTAGGLYHW--EFER---EGKTLRVKVDGQLTCSPLPERIDAALS 237 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G GIA +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 238 GFGIACVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275 >gi|315182133|gb|ADT89046.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC 11218] Length = 308 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 15/275 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA SF+ AAE+L L ++S+S I LET+ G +L R R ++LT G + Sbjct: 7 MHTFVRVAELASFSRAAEELGLPKASVSNHIQLLETQAGARLLQRTTRKVSLTPDGRTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + E ++ + SG++R+ + + ++ +L EFL +P +Q++L Sbjct: 67 ERCLDLLAEFEELDTLFVQTEQQLSGRIRVDMPTGMAKGVVVPHLAEFLQQHPGVQLELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D +R + + S+LI RK+ + + YA+P YL EP + +L Sbjct: 127 STDRRVDVVREGFDFVVRAGQ-LSDSALIARKVCDMAVRTYASPDYLARHGEPKTPDDLS 185 Query: 188 KHNLITFGDLI---PKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H L+ + + P E D L T+D L VN+ S C+ G G+ Sbjct: 186 HHQLVHYAQNLGGQPDGWEYWDGERLHTID------MAGALTVNNAESYTAACLAGIGLI 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P+ V+ + LV ++ + VY YP Sbjct: 240 QTPESGVRKLVASGQLVEVLANFTCQPLPVYLLYP 274 >gi|288935133|ref|YP_003439192.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288889842|gb|ADC58160.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 307 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 5/246 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A + SF AA L +S S++ + ++ LE ++G++LF R R ++LT +G+ Sbjct: 6 SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + EL S +P+GKLRI+ + +G LL L F LYP +++ L Sbjct: 66 LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFTSLYPQVELDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +++ + D AIR + + S LI RKL A+P YL P S EL Sbjct: 125 DFSDRLVNLIDEGFDVAIRSGE-LADSRLIARKLGGFRFVLCASPAYLAEYGVPGSPAEL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H I F P W R G+ R + + VN+ + ++ G GIA +P Sbjct: 184 AAHKCIFF--RFPSTGLIQPWELRDMRLTGDFRATAVMTVNNIEAAIRLSAAGMGIAYVP 241 Query: 246 DYIVKD 251 D++V++ Sbjct: 242 DFVVRE 247 >gi|78049436|ref|YP_365611.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037866|emb|CAJ25611.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 353 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 17/297 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE L +S++S+++ + LE + +KL R R + +T G+ Sbjct: 49 FDAMQAFARVVETGSFTKAAEHLDMSRASVTQLVQQLEARLRVKLLNRTTRRVQVTADGA 108 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + L ++ P G+LR+ L + +L L F YP+IQ+ Sbjct: 109 AYYERVLRLLADLDDAETSLSVAASLPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 168 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR I SLI R + + YAAP YL+ P Sbjct: 169 DMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPTHPT 227 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ +H + F +P M+ + V G ++ N+YL+ + Sbjct: 228 ELENTRHRCVGFMRWGSSTTVPYVMQRGDEAVRVH---GRHVVAADDGNAYLAA---GLA 281 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ LP Y+ + LV I +D + + +P + KL+ F +++ Sbjct: 282 GMGVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVI 338 >gi|260462486|ref|ZP_05810693.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259031682|gb|EEW32951.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 297 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 142/299 (47%), Gaps = 12/299 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D ++L F VA SFT AA +L ++QS++S I LE +GI+L R R + T G Sbjct: 5 DLNQLTWFQAVAEERSFTRAAAKLGVAQSTLSHTIKQLEARMGIRLLTRTTRNVATTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R + ++E L KPSG +R+ + ++++ LK+ L YPDI Sbjct: 65 ERLLRTIAPRIGEIEDEIAALMAFREKPSGSVRLTLSDHALESVVWPKLKQVLSAYPDIG 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LILD+ +I + D +RL + ++ + R + A +P Y P+ Sbjct: 125 VELILDSTFRNIVEEGFDAGVRLGESVEKDMIAVRIGPDWRLVAVGSPDYFAAHGVPVHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L +H I + + W D R+ L N+ +++ V G GIA Sbjct: 185 QDLVRHVCINMRQETAGGL--YAWEFEKDGQALRVRVDGQLTFNNTYAMIDAAVCGYGIA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFI-FLKARD 296 +P+ IV+ + LV+++ D +P F YF YP +N L AF+ I L+ RD Sbjct: 243 YVPENIVERQIASGLLVQVL-DEWSPLFDGYFLYYPSRRQN---LPAFKVIIDALRHRD 297 >gi|167614745|ref|ZP_02383380.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 307 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 125/292 (42%), Gaps = 25/292 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA + F+HAA QL+LS S ++R + LE+ +G+KL R R LTE G + Sbjct: 1 MRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L + S +G L + + L G E+ +PD+ +++ Sbjct: 61 EGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHPDVSLRIT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++D+ D I I S SL+ R L+ + A A+P YL P +L Sbjct: 121 QTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPPARPADLA 180 Query: 188 KHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +H +I + W +D PI VN+ Q + G Sbjct: 181 RHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPI--------TVNNAPMQRQLVLAGG 228 Query: 240 GIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286 GI LLP+Y+V ++ L R++ D + T+ YP GK++AF Sbjct: 229 GIGLLPEYLVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAF 280 >gi|167576563|ref|ZP_02369437.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 307 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 125/292 (42%), Gaps = 25/292 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA + F+HAA QL+LS S ++R + LE+ +G+KL R R LTE G + Sbjct: 1 MRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L + S +G L + + L G E+ +PD+ +++ Sbjct: 61 EGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHPDVSLRIT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++D+ D I I S SL+ R L+ + A A+P YL P +L Sbjct: 121 QTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPPTRPADLA 180 Query: 188 KHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +H +I + W +D PI VN+ Q + G Sbjct: 181 RHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPI--------TVNNAPMQRQLVLAGG 228 Query: 240 GIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286 GI LLP+Y+V ++ L R++ D + T+ YP GK++AF Sbjct: 229 GIGLLPEYLVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAF 280 >gi|56476178|ref|YP_157767.1| LysR family transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56312221|emb|CAI06866.1| putative transcription regulator protein, lysR family [Aromatoleum aromaticum EbN1] Length = 304 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 140/294 (47%), Gaps = 9/294 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F V +GSF+ AA +L +S+S++S+ ++ LE G +L R R L+LTE G Sbjct: 3 DLNLMATFARVVEAGSFSEAARRLDVSRSAVSKAVAKLEKAFGARLLNRSTRALSLTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + E + + +P G L+++ ++ G + L +FL YP++ Sbjct: 63 AAVAEHCARIVDEAEQAEQVVMSFHAEPRGILKVSASVAFGTLHVAPALADFLGRYPELA 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + +++ +K +D++ + D A+R+ SL+ R+L + A P Y + P + Sbjct: 123 LDMMITDKLVDLAEEGYDLAVRVTGE-PPGSLVARRLAPVRRRICATPEYFRRRGVPQTP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H+ +++ E W + + I P L ++ ++ Q + G G+A Sbjct: 182 EDLVHHHCLSYA----HSGEKGQWRFSGPEGEIAVPVKGPLHIDDDEALSQAVLSGLGVA 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LLP +IV + L ++ + + VY Y K++A +F + Sbjct: 238 LLPTFIVGGDLQQGRLQAVLSEYLPVQQHVYALYLPTRHLPAKVRALIDFFVAR 291 >gi|124267599|ref|YP_001021603.1| LysR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260374|gb|ABM95368.1| transcriptional regulator, LysR family [Methylibium petroleiphilum PM1] Length = 323 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 138/286 (48%), Gaps = 9/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A S SF AA L ++ S +S+ ++ LET++G++L +R R ++LT+ G+ Sbjct: 9 AFVRTAESRSFAQAARLLDVTPSGVSKSVARLETQLGLRLLHRTTRQVSLTDDGAVFFEH 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + + + PSG+LR++ LG+ + L +FL PD+ ++L L Sbjct: 69 CRRLLDDFDAARSLMSDRGAAPSGRLRVSVPSTLGKLFVVPRLPQFLAARPDVTLELDLS 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ + + + D A+R+ + SSL+ R L T + A+P YL++ ++ +L +H Sbjct: 129 DRQVALVDERVDVAVRI-GTLVDSSLVARPLWTQQVVTIASPGYLQDSAALATLGDLARH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVD-RPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 ++F P + W+ D R + PR+ + ++ +++ G G+A +PDY Sbjct: 188 RCLSF--RWPTTGRERPWMFRCDGRTVQLRPRV-YMMLDEGEAMVVAVRAGLGVAQVPDY 244 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D V ++ + P + Y + +AF +++ Sbjct: 245 MAADAIDRGEAVEVLAGIRPPPTPINAVYASQRNLPARTRAFVDWL 290 >gi|270262595|ref|ZP_06190866.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043279|gb|EFA16372.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 371 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 21/295 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D L +F +A SFTHAAE L + + S + +E +G++L +R R + LTE G Sbjct: 72 DLDSLAIFVRIAEMASFTHAAESLGIQKGRASNVVRRIEAAMGVRLLHRSTRTVQLTEDG 131 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E S G+LRI +L + + L F+ YP+IQ Sbjct: 132 RAFYNRARALLADAEELNSMFASSKTPLRGRLRIDLPTELARTPIVPALPSFMATYPEIQ 191 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ ++ +D+ + DCA+R+ + I +L+ +K+ + M A+P YLKN P ++ Sbjct: 192 LEISSTDRRVDLIQEGIDCALRIGE-IVDETLVAQKMGALSMVNVASPAYLKNHGMPHTL 250 Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL--SIMQYCVLG- 238 ++L +H +I + ++ F W + P G+ + + S S+ Y G Sbjct: 251 EDLSAQEHRMIHYAPILGS--RPFGW----EYPKGDGYATLMLAGSISVNSVQTYHAAGL 304 Query: 239 -------SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +G + L +YI +N LV I+ D+ TV F + ++++F Sbjct: 305 AGLGLIQAGRSSLIEYI--ENGELVEILPDLRPEPLTVSFVVAHRQNLSRRVRSF 357 >gi|323179530|gb|EFZ65097.1| hypothetical protein ECOK1180_1835 [Escherichia coli 1180] Length = 299 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+HAA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSHAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|300694445|ref|YP_003750418.1| transcriptional regulator, lysr family [Ralstonia solanacearum PSI07] gi|299076482|emb|CBJ35800.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 310 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 19/299 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF AA++L +S ++S + LE + ++LF R R + LTE G L Sbjct: 8 ELTAFIAIAEQRSFRAAAKKLGVSAPALSHAVKNLEASLNVRLFNRTTRSVALTEAGEHL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R LE E+ + +P+G +RI+ + L++ L EFL YPDI +++ Sbjct: 68 LRRVGPALADLEDGINEVASAGTRPAGSIRISAAEAGARPLVRHVLPEFLAAYPDIHVEI 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D + +DI + D IR+ + + A A+P YL + P + Q+L Sbjct: 128 VVDTRLVDIVAEGFDAGIRVLSDVPQDMIAVEFGPAFRFAAVASPDYLSRHKPPKTPQDL 187 Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H I F G L +E A++D + P + + + ++ + G GIA Sbjct: 188 RQHRCIRFRFLSGALYRWELERRGSSASID--VDGP----MTLGNTNLMVDAALAGIGIA 241 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +P+Y V ++ LV ++ D +PS + YP L+ F + R+W Sbjct: 242 WVPEYHVVEHLAAGRLVHLLPD-WSPSLPGLCLYYPANRHPPAALRLFSQAV----REW 295 >gi|293396222|ref|ZP_06640502.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421355|gb|EFE94604.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 317 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR GSFTHAA QL ++ ++S+ I LET +GI+LF R +R + L+++G + Sbjct: 8 LPFFEAVARLGSFTHAARQLGVTPPAVSQNIQTLETRLGIRLFNRTSRSVRLSDEGKLFY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ ++ +PSG LRI L+ L EF YP+IQ++L Sbjct: 68 QSVAPAMSQIDVAAENIRALRSRPSGHLRITLPQLAASLLVMPFLTEFHARYPEIQLELF 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLI-------QRKLVTIHMHAYAAPHYLKNCREP 180 D++ D+ +D+ D IR+ +Q + QR +V AAPHYL P Sbjct: 128 TDDRFADLVLDHFDAGIRMHAVLQKDMIAVPIDNGQQRVIV-------AAPHYLAQHGMP 180 Query: 181 LSIQELDKHNLITF 194 + + L +HN + + Sbjct: 181 TTPEALRQHNCLRY 194 >gi|222084825|ref|YP_002543354.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722273|gb|ACM25429.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 305 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 12/262 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA QL S +++SR+I LE + +KLF R+ RG LT Sbjct: 7 FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFALKVKLFERNPRGYVLTGM 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + E + +L S G +RI+ + L EF YP+I Sbjct: 67 GQRFIDTAERMEQETERLRADLTVGSAAQRGVVRISAPEGISNFFFTTMLPEFTARYPNI 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + + +S AD + L P ++ KL H+ Y + YL N S Sbjct: 127 SLELVTIQQIMSLSRKEADIVVVLDPP-KAGPYFTEKLTDYHLQVYGSRDYLANHPPVES 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLGS 239 +L H + + +ED + +D +G+ PRI Q +S + + G Sbjct: 186 RNDLPDHAFVGY-------IEDMIFAPGLDY-LGDIHPRIKPQFQSSSIFAQLTATKNGL 237 Query: 240 GIALLPDYIVKDNPNLVRIMED 261 G+ +LP +I +P+L ++ D Sbjct: 238 GLCVLPYFIACRHPDLQMVLPD 259 >gi|209521044|ref|ZP_03269777.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209498538|gb|EDZ98660.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 302 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 12/272 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F A+S SFT AA+QL L++S++ + I+ LE +G KLF+R R + LT G Sbjct: 12 IFVAAAKSRSFTDAADQLGLTKSAVGKSIAKLEERLGAKLFHRTTRSIALTADGEAYFAA 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S ++ + L +P G+LRI G+ +L L + +PD+Q + Sbjct: 72 CSAALDEISAAEAALGPGQQRPVGRLRIDMPAAFGRRVLVPILLKIGREHPDLQFTMTFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID + D +R + SS L+ R+L + M AAP YLK P ++ +L H Sbjct: 132 DHIIDPIEEGVDLVVRFGELQSSSGLVARRLTSQRMVIAAAPEYLKRKGTPKTVDDLQNH 191 Query: 190 NLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + + + +W D R I P Q++ +I+ + G GI +P Sbjct: 192 SCVVGY----RRGQPLSWRVNTDGESRRISPP--PTHQISDGDTIIDAALSGLGICQMPM 245 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 +++ LV +++ V V+ +P+ Sbjct: 246 SLLRPGLKGGTLVSVLDKVSKDLIDVHVVWPK 277 >gi|221065696|ref|ZP_03541801.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220710719|gb|EED66087.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 303 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 14/266 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ ++ +F V GS + AA QL ++ S++S+ I LE E G+ L +R R LTLT+ G Sbjct: 3 DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEQEAGLTLLHRSTRQLTLTDAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + EL +PSG+LR+A Q+ L ++L ++P+++ Sbjct: 63 QRFYIQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHAAPA-LGKWLAMHPELR 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCRE 179 ++L++D+ ID+ D A+R +Q SS + R L A+PH++K R Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATVLCASPHWIKAHGSTPRH 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238 P + +L + D DF W ++ L V+++ S + Q+C G Sbjct: 181 PGELAQLPWLEMSRSDD----AQADFLWRQQGTNQEFRLQVRPLMVSNHRSAVQQFCEAG 236 Query: 239 SGIALLPDYIVK---DNPNLVRIMED 261 G+ALL + V ++ +LVR++ D Sbjct: 237 LGLALLSAHDVAASLESGSLVRLLPD 262 >gi|170700497|ref|ZP_02891501.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170134578|gb|EDT02902.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 319 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +G+FT AA L L+ +++S I LE E+ +KLF R RG++LTE G Sbjct: 11 LHVFMSVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQHYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 + T Y ++ + L+E +P G LR+ T + L ++L + L F YP +++++ Sbjct: 71 QQTEPAYRQVMQARDALKEVRSEPGGLLRV-TALPLARSLVITPILAAFRARYPKVRLEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +N+ +DI+ D D IRL +Q + R + A+P YL P SI EL Sbjct: 130 RYENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGMPASIAEL 189 Query: 187 DKHNLITF 194 ++H I F Sbjct: 190 ERHACIRF 197 >gi|167585548|ref|ZP_02377936.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 324 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLTMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ L+ L F YPDI + L Sbjct: 67 EHCVKIIAEIAEADASFQTGNRKPSGVLRVHMPNALGRRLVIPALPAFRQRYPDITLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YLK +P I +L Sbjct: 127 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLKRHGDPHEIADLA 185 Query: 188 KHNLITF 194 +H + F Sbjct: 186 EHVAVNF 192 >gi|83749827|ref|ZP_00946798.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207743205|ref|YP_002259597.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609] gi|83723507|gb|EAP70714.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206594602|emb|CAQ61529.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609] Length = 300 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 20/291 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS T AA+ L +S++ ++R ++ +ET G +L +R R + LT G Sbjct: 9 VFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTPAGEATLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + + P G LR+A L Q +L + +L YPD I L++D Sbjct: 69 CRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPDTAIDLVVD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +++ + D A+R+ + +LI R L T AAP YL P +++L H Sbjct: 129 NRTVNLVEERIDLAVRITNDLD-PNLIARPLGTCESVVCAAPAYLAAHGTPRRVEDLAVH 187 Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 N +T FG + W T R GEP + L N ++++ G+GI Sbjct: 188 NCLTYSYFGKSL--------WRFTEAR-TGEPAVVPVGGNLSANESMALLAAVKAGAGIG 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + P + + LVR++ D + + ++ Y + L+A +F+ Sbjct: 239 MQPAFAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFL 289 >gi|325293833|ref|YP_004279697.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gi|325061686|gb|ADY65377.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 299 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 21/299 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG--- 63 ++ VF A GSF+ A +L LS S++S+ ++ +E +G +L R R +TLT +G Sbjct: 7 EMEVFVAAAELGSFSAAGRRLKLSPSAVSKLVTRIEDRLGTRLLARSTRVVTLTPEGEIY 66 Query: 64 -SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 S+ R+ +++ +T QI V P G LR+ T+ G+ L EFL LYP+I Sbjct: 67 LSRARRILADIA---DTEQIVAGGGKVVPRGLLRVNATLGFGERYLLPLAPEFLSLYPEI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L + I + + D AIR + SSL RKL + A+P Y++ P Sbjct: 124 ELDISLTDGVISLIEERTDIAIR-SGGMADSSLKARKLKEVRRIIVASPAYIEKHGMPEK 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238 Q+L +HN I+F N D E P VNS +++ + C+ G Sbjct: 183 PQDLAQHNCISF-----NFSRSLNEWPFRDPGTTEVYRLPVTGNASVNSGMAMRRLCLTG 237 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFLK 293 G+ + ++ V+ + LV ++ED V + Y +++AF +F+ K Sbjct: 238 LGLGRVGEFHVEPDIEAGLLVPVLEDYNPGDMEVIHAVYAGHDHLAARVRAFIDFVAAK 296 >gi|153010203|ref|YP_001371417.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562091|gb|ABS15588.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 303 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 12/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT A+ L++ +++IS I GLE + KL R R + +T G+ + Sbjct: 7 MRAFLRVVETGNFTRASASLNMPKATISNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L L + P G+LR+ + ++ L EF YPDIQI L Sbjct: 67 ERAARLLADLAELDGSLSSAQTLPKGRLRVEMASAVANLIIIPALIEFHQRYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCAIR+ + + SLI R++ +H A A+ YL C PL +L Sbjct: 127 VSDRPVDYVAENVDCAIRIGE-LADQSLIARRIGDMHFIACASAEYLDRCSTPLHPSDLG 185 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + N G P + + T + + G ++ + +YL+ + G G+ Sbjct: 186 R-NCTVVGYFRPSTGQQMPFRFKKGTEEIEVNGRYVVAANESTTYLAAAR---AGLGVVQ 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++VK DN L ++++ +Y YP + +L+ F +++ Sbjct: 242 APLFMVKDDIDNGTLRPVLQEWEIEPMPIYLVYPPNRHLSNRLRVFADWV 291 >gi|78066354|ref|YP_369123.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967099|gb|ABB08479.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 321 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 16/293 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + +F + A GSFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 12 SIELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRY 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +L + E P+G LRI+ G + L F YPD++++ Sbjct: 72 FEQCRDALSQLVDAEREATGQQATPAGLLRISMPTPYGHYRVLPLLPAFRERYPDVRVET 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N++ID + + D AIR R P S+L+ R L + A P YLK P I +L Sbjct: 132 HLSNRNIDFAEEGYDLAIRGRAPAD-SNLVARTLEDAELVIVATPGYLKRAGTPTVIDDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV------LGSG 240 H I F +P WL + G I SY + Y G+G Sbjct: 191 HAHECIQFE--LPSSGRQIPWLFS----DGSEEIDVATTGSYGTSGDYLAGVTLARSGAG 244 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +IV+ + LV ++ + S YP A + +++ F +F+ Sbjct: 245 LFQAYRFIVEQDLRAGTLVEVLPGLGGRSRPFMLLYPHARFLSSRVRVFVDFL 297 >gi|320183471|gb|EFW58320.1| LysR family transcriptional regulator YhjC [Shigella flexneri CDC 796-83] Length = 323 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ S L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|300024549|ref|YP_003757160.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526370|gb|ADJ24839.1| transcriptional regulator, LysR family [Hyphomicrobium denitrificans ATCC 51888] Length = 305 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 142/290 (48%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V SGS+ AA +L+L++S++S+ + LE +G +L R R +T TE G Sbjct: 5 EAMNAFAKVVASGSYAEAARRLNLTRSAVSKAVMELEQALGARLLDRTTRRVTPTEAGLA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +++ T+ ++ +P G L++ + G L + +F++ Y D++++ Sbjct: 65 YYERCLAILAQVDETEAQISRLHDEPKGVLKVNAPMSFGTLYLGDAVADFMIRYSDLKVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ID + D +R+ + SSLI R++ + A+P YLK P S + Sbjct: 125 LTLTDRFIDPLEEGVDVTVRIGAMVD-SSLIARRISPARIVLVASPDYLKAHGTPQSPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H +++G + M+ ++ L +P+ +CL N+ + + + G GIALLP Sbjct: 184 LAEHRCLSYGHMT--SMQRWH-LTDKGKPVSVAIGACLSSNNGDVLREAALKGIGIALLP 240 Query: 246 DYIVKDNPNLVRIMEDVITPS-----FTVYFCYPEALKNTGKLKAFRNFI 290 +I + R+ ++ P T++ Y K + F +F+ Sbjct: 241 TFIAGKDIAAKRLQ--IVLPENQPDDLTIHALYAPNRYLAAKTRVFIDFL 288 >gi|253997145|ref|YP_003049209.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983824|gb|ACT48682.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8] Length = 294 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 21/293 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF GSF+ AAE ++ + +S+ I+ LE +G L R R LTE G + Sbjct: 7 MEVFVSAVELGSFSAAAEVFKITPAMVSKHITALEQRLGATLLARTTRKQNLTEIGKNYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + + P G L++ +I G L + ++L YP++ I L Sbjct: 67 DNCKKILGQINDAEAGAEAMGSNPRGHLKVNASIWFGSLTLTPLVCDYLNQYPEVNISLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D AIR+ + ++ S+LI RKL + A+P+YL P + EL Sbjct: 127 LTDRYVDLVEEGFDVAIRIGE-LKDSTLIARKLSMFEVAICASPNYLAKAGTPTTPDELI 185 Query: 188 KHNLITFGDLIPKCMEDFNW-----LATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240 KH +C+ NW + + +G ++ + ++ +++ V G G Sbjct: 186 KH----------QCLGFTNWHHQGGWQLIQKQLGAKFEQVPRFESDNGQALLTAAVKGIG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I ++P +++ ++ +LV +M D + P+ ++ YP + KL +F F+ Sbjct: 236 IIMMPKELMRKDIESGHLVELMHDYLPPARPIHAVYPSERQLAPKLTSFVEFL 288 >gi|332305996|ref|YP_004433847.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173325|gb|AEE22579.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 294 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 143/306 (46%), Gaps = 21/306 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MSF ++ + F VA + F+ AA +L+++ S ISR+++ LE E+G+ L R R + LT Sbjct: 1 MSFSFNGIIEFVAVAETQGFSAAARKLNVNVSHISRKVAALEKELGVSLLARSTRTVRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G E+ + L+ + + V+ SG L+++ + + + L EF L+P Sbjct: 61 DAGQAYFSRCQELVYGLQEANETVFDKQVELSGTLKVSAAGEFAEQHIAPLLVEFAQLHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I++ +++ ++ D D +IR P++ SSLI RKL + A A+ YL P Sbjct: 121 KLTIEMDFNSQMVNFIDDTFDFSIRY-GPMKDSSLIARKLTNRSLVAAASERYLAENGIP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN--W-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L +H KC+ N W +R I + + NS S++ C Sbjct: 180 TQPSHLTEH----------KCLMTNNSTWFFKDTNRAIEVKLDARWRSNSVRSVVLACER 229 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL-- 292 G G+A LP D N ++V ++E + Y A +N KA IFL Sbjct: 230 GLGVAYLPRSSFGDALNNGSVVPVLEPYWNREIATWIVY--ANRNYLPAKARLAIIFLLD 287 Query: 293 KARDWK 298 K +DW+ Sbjct: 288 KFKDWQ 293 >gi|190572610|ref|YP_001970455.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010532|emb|CAQ44141.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 293 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 23/292 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V F+ AA+ L +S + ++RQ++ LE + +L +R R ++ T G+ Sbjct: 5 EAMRVFVAVVERNGFSAAAQALDMSTAGVTRQVAALEKRLSTRLLHRTTRRVSPTSAGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + + +++PSG LRI + G L L + +P +++ Sbjct: 65 YYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRQRFPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P +LI R+L + AAP YL P + Q Sbjct: 125 LALSDRLVDMVEEGYDVAIRITREP--GPTLIARRLGESRVSLCAAPAYLAAHGTPQTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT----VDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 EL H C+ W A + P GE ++ S L N+ + + + Sbjct: 183 ELQAH----------ACLSYSYWAAGDHWPLQGPGGEVKVAVSSLLHANNGDVLREAAIA 232 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+ L PD++++D + LVR++ + ++ Y K+++F Sbjct: 233 GMGVILQPDFLLEDALADGRLVRVLPEWEAAPIGIFAVYTSRSHLAPKVRSF 284 >gi|218767562|ref|YP_002342074.1| putative lysR-family transcriptional regulator [Neisseria meningitidis Z2491] gi|121051570|emb|CAM07868.1| putative lysR-family transcriptional regulator [Neisseria meningitidis Z2491] Length = 299 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 7/253 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN 252 GIA L D++V ++ Sbjct: 235 GIACLSDFLVDND 247 >gi|307314151|ref|ZP_07593762.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306899137|gb|EFN29777.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 296 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 15/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVA+ SFT AA +L +S S++S+ I LE +G++L R R + TE G Sbjct: 3 NFNDLAAFAVVAKERSFTRAAAKLRVSPSALSQTIRNLEERLGLRLLTRTTRSVASTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R + + ++E L E KP+G +RI +LLQ LK FL YPDIQ Sbjct: 63 ERLLRTIAPRFDEIEAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPDYPDIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I+D DI + D +R+ + + + R + M A+P Y + P + Sbjct: 123 VEIIIDYGLTDIVAEGYDAGVRMGEQVAKDMIAVRIGPDMRMALVASPGYFERHPLPKTP 182 Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L HN I T+G + P +E V R G+ L NS + + G Sbjct: 183 QDLTDHNCINIRLPTYGGVFPWGLEKDERDVKV-RGDGQ-----LVFNSLAMRLASALDG 236 Query: 239 SGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCY 273 G+A +P D+++ + LVR++E+ P F Y Y Sbjct: 237 LGVAYMPEDHVLPYLADGRLVRVLEE-WCPYFPGYHLY 273 >gi|153011562|ref|YP_001372776.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151563450|gb|ABS16947.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 297 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 139/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G +L R R +LTE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +++ Q + E+S G+++++ ++ +L +F L +PDI + + Sbjct: 66 YHRAVEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPDIVLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ + +Q SSLI ++L H AP + +P ++L Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSILCGAPELISRVGKPERPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + ++++ T + P ++VNS ++ + G G +LP Sbjct: 185 ADRPCII--DTNARSRNNWHFRNTDGSMMTVPVNGPIEVNSPVATKNAALAGLGFCMLPA 242 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I ++ LV +++ I +Y YP K++A +F+ Sbjct: 243 FIAEEEIERGRLVACLDEFIVKDGGIYAVYPHRRYLPAKIRALVDFL 289 >gi|332530401|ref|ZP_08406346.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040212|gb|EGI76593.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 306 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 17/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V + SFT AA+ LH+S++++++ + LE + +KL R R + +T G+ Sbjct: 4 FDAMQAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVKLLNRTTRQVNVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + L ++ P G+LR+ L + +L +F YP+IQ+ Sbjct: 64 AYYERVVRLLADLQDAETSLSSAAAAPHGRLRVDVPSPLARLILVPAFADFHARYPEIQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC +R +P SLI R + + + YAAP YL P+ Sbjct: 124 HLGVSDRVVDLIDENVDCVVRGGEP-GDPSLIARHVGDLAIRLYAAPAYLARAGTPVHPL 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +L+ H ++ F G ++P + V G ++ N+YL+ ++ Sbjct: 183 DLETAPHQIVGFLWSSTGRILPCTLRRGEDSVEVR---GRYALAVDDGNAYLAA---GLV 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G LP Y+ + L + ED +Y YP +L+ F +++ Sbjct: 237 GLGALWLPHYLAAAHVERGELRPLFEDWSIAPMPLYLAYPPKRHVGARLRVFIDWV 292 >gi|296137223|ref|YP_003644465.1| transcriptional regulator, LysR family [Thiomonas intermedia K12] gi|295797345|gb|ADG32135.1| transcriptional regulator, LysR family [Thiomonas intermedia K12] Length = 301 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS T AA ++ + I R+I LE +G+KL R R ++LT++GS Sbjct: 6 QLETFVAVATKGSLTAAAHAEGVAPAIIGRRIDALEARLGVKLLLRTTRRISLTDEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +L+ + + VK SG LRI G+ + + FL +P++ + L Sbjct: 66 LEDCQRLLAELQNAEASVSAGGVKASGHLRITAPAGFGRRHIAPLIPGFLDQHPEVSLSL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+R+ + SSL+ +L AAP YL+ P + +L Sbjct: 126 DLTDRLVDLVNEGYDCAVRV-GDLADSSLVSLRLADNRRVCVAAPSYLQRHGTPATPSDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H + + + + W+ + I R++ + + Q+C+ G GIA Sbjct: 185 ARHQCLAYSSV---SSQPRGWMFQAEGEILHVRVAGRMDCTDGAVLHQWCLEGRGIAWRS 241 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV ++ED P ++ + + +L+ + +++ Sbjct: 242 LWEVGASLEQGKLVALLEDYAAPPNGIFAVFTQRKHQPLRLRLWLDYL 289 >gi|115353065|ref|YP_774904.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115283053|gb|ABI88570.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 320 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185 Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN + + ++ + D + V+ L VN + + G+GIA Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLK------GNLIVNHLEGLRAAVLAGAGIA 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|301629584|ref|XP_002943918.1| PREDICTED: uncharacterized HTH-type transcriptional regulator ycaN-like [Xenopus (Silurana) tropicalis] Length = 435 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 16/285 (5%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MSFD + V V SGSF AA+ L ++ S +SR IS LE +GI+LF R R + Sbjct: 1 MSFDPGLAGGMGVLAAVVDSGSFARAADSLEMTPSGVSRAISRLEKRLGIRLFDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT++G + ++ + + LE +S++ G+LR+ + +L L EF+ Sbjct: 61 QLTDEGRRFYQEIAPLLAGLEEAASSAADSALTVRGRLRVNIDPYFSRLVLGPVLGEFMS 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP +Q+ L ++ D+ D D AIR P QSSSLI RKL+ + + A+P YL+ Sbjct: 121 QYPQLQLDLHTRDQLGDLVADGFDLAIRFGIP-QSSSLIARKLMEVRVLTLASPDYLERH 179 Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIM 232 P ++L+ +H I F D + F W RP ++ L VN ++ Sbjct: 180 GRPTHPKDLEDGQHVCIDFRD--SQTGRPFGW--EFHRPGEHVNVATSGRLVVNDAGTLY 235 Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 C G +A + D + ++ LV + D F +Y YP Sbjct: 236 SVCEHGHAVAQMLDLGLAPALESGALVELFPDWPDERFPLYAFYP 280 >gi|290512807|ref|ZP_06552172.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289774690|gb|EFD82693.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 301 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 2/191 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L+ F V +GSFT AA+ L + +++S+ I LE +G+ L R R +T+T +G Sbjct: 4 FSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTPEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + LE + KP G LRIA ++L L +F+ +PDI+I Sbjct: 64 EYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +K D+ DCAIR P+ S+LI RK+ + A P YL+ C P S Sbjct: 124 DLQVADKPADLISGNIDCAIR-GGPMDDSTLIARKIGEATLVTCATPGYLQRCGTPASPD 182 Query: 185 EL-DKHNLITF 194 EL H LI++ Sbjct: 183 ELHHGHQLISY 193 >gi|160897459|ref|YP_001563041.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363043|gb|ABX34656.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 297 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 15/297 (5%) Query: 1 MSFDWDK---LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+ D D L F A SF A L +S S++ + ++ LE ++G++LF R R + Sbjct: 1 MAIDMDSFSGLESFVRAADLLSFAEAGRALGISASAVGKNVARLEQQLGLRLFQRTTRQV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT++G+ H + +L + +Q ++ P G+LR++ +G L L EF + Sbjct: 61 RLTQEGALFHERCRRILDELHDARATMQAAAEAPRGRLRVSLPT-IGYRFLLPVLPEFQV 119 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYP++ + L ++ +D+ D IR + S L+ R+L +P YL Sbjct: 120 LYPEVDLDLDFNDHLVDVVEAGLDVVIR-SGELADSRLVARRLGPFRFILAGSPDYLAAR 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236 P S EL +H+ + + L +E+ W+ P P + + L N+ +++ V Sbjct: 179 GIPQSPAELAQHSCLRYRFLSSGKLEE--WVL----PGMPPHLPAALVCNNMEAMLGAAV 232 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A +PD++ +D L R++ + +T + + + + + K++AF +F+ Sbjct: 233 AGMGLAYMPDFLARDALGRGELQRVLAEDLTHTGQFSALWASSRQLSPKVRAFVDFV 289 >gi|226952935|ref|ZP_03823399.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294650511|ref|ZP_06727870.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|226836256|gb|EEH68639.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292823654|gb|EFF82498.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 306 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 145/295 (49%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE ++G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEEQLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S +P G ++++ +D+ QN + L FL YP Sbjct: 61 DIGMDVYRHAQVMMNAAQAAHDVVNHLSSEPRGVIKVSVPVDIAQNQMAKILPTFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 ++++Q+++ N+ +D+ + D A+R+R + + +L+ R+ TI +A+ YL Sbjct: 121 EVRVQMLVSNRRVDVINEGIDLALRVRSNLDEDPNLVLRQFETIEQRLFASQAYLNEFGH 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238 + ++L H +I+ + ++ L+ + + +++ + + S L ++ + Sbjct: 181 VTTPEQLTDHRIISMSE---DHLDQQFLLSGPNNIQKKIKVNPVIMGSNLLMLTELASQN 237 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD I + ++ LVR++ + P + YP G L A R FI Sbjct: 238 CGIALLPDSIAQNFVESGQLVRVLPEWTAPHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|241554253|ref|YP_002979466.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863559|gb|ACS61221.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 297 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 15/292 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + ++L F V +GSFT AAE+L ++++ +S+Q++ LE E+ L R R + TE Sbjct: 3 AVNLNRLAYFAAVVDTGSFTKAAERLAITKTVVSQQVARLEAELKTSLLLRTTRRVEPTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L+ ++ + E E+ ++ +P+G LRIA D G + + F+ YP Sbjct: 63 AGKLLYARCVLIFREAEDAVDEITRANAEPTGMLRIAAPNDYGASTIAPIAASFIRKYPA 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++L+L + +D+ + D +IR+ + SS R++ + A+P + L Sbjct: 123 CRVELLLADTKMDLLANQIDLSIRVGW-LDDSSHQARRIGSFRQFLVASPSFSAT----L 177 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 S+ + F +L K E W DR + S L NS +++ + Sbjct: 178 SLNSPEDAAGQPFIANLALK--EPVTWRFIQGDFDRRTVRMQQS-LMSNSTPAVLAATLA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+GI++LPD++ D L+R++ D P+ +Y YP A T K+ AF Sbjct: 235 GAGISVLPDFLAGEHIDAGRLIRLLPDWSLPAGGIYVVYPAARFRTPKVTAF 286 >gi|149922891|ref|ZP_01911313.1| Transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149816279|gb|EDM75784.1| Transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 309 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 7/280 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V R SFT A + + L S++SR+++ LE +G KL +R R + LT+ G + Sbjct: 13 VFTEVVRQSSFTRAGKVVGLPASAVSRRVARLEAALGFKLLHRTTRSVGLTDAGRVYYER 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 T+ + H + +QE P G LR+ D G ++ + F+ +P++++++I Sbjct: 73 TAHIAHDVLDAARAVQEYLDTPKGLLRVTAPPDDG-GVIWAMISGFVRDHPEVELEIIHT 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ D A+R P S++L R+LV A+P YL+ P +EL +H Sbjct: 132 LEYVDLIEAGVDVALRGGSPPDSTALTARRLVDSRFVLVASPRYLERRGTPTRPEELAEH 191 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + +P F+ L D P+ + ++ NS + + + G GIA + + Sbjct: 192 DCVAMDTWVPNA---FSSLMGPDGPVSVDFRNRVRSNSQETARKAALDGFGIAPMVEMTC 248 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ LV ++ + T + YP A + +AF Sbjct: 249 WRQLESGALVEVLPGALPWPATFWAVYPVARSKSAATRAF 288 >gi|83646550|ref|YP_434985.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83634593|gb|ABC30560.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 296 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 1/186 (0%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VAR+ SF+ AAE L LS +++SR+I LE E GI LF R R + LTE + Sbjct: 12 LFVEVARTRSFSRAAENLGLSTATLSRRIRALERESGISLFTRTTRRVELTEAARRYFER 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + Q L E + +P G LR++ +DLG + + L EF YP I ++ L Sbjct: 72 CERLVDEAFSAQEALFEEAKRPQGTLRLSMPVDLGVHYIAPLLPEFARRYPGIDFEIDLS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + D++ + D AIRL ++ +L+ R++ I +A+P YL+ P ++L H Sbjct: 132 PQHRDLASEQIDIAIRL-GVVKDQNLVSRRIGWIEQGLFASPTYLQRQPAPSHPEQLSDH 190 Query: 190 NLITFG 195 + I G Sbjct: 191 DCIIIG 196 >gi|290475772|ref|YP_003468661.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004] gi|289175094|emb|CBJ81897.1| putative transcriptional regulator (LysR family) [Xenorhabdus bovienii SS-2004] Length = 311 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 11/251 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S WD +RVF +AR+G+ + AA+ L + +++SR+I LET G+ LF RH G LTE Sbjct: 8 SLVWDDIRVFLAIARTGTLSRAADVLKIGIATVSRKIERLETTFGMPLFLRHQAGYRLTE 67 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + + +E ++ + SGK+R+ATT +L+ +L YPD Sbjct: 68 DGKELLEKAKAMEIAASSFLLE-ADTRIAISGKVRLATTETFASDLVIPSLPTLQKNYPD 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + +++ D +D+ AD A+R+ +P + + R+L + Y YL C + Sbjct: 127 LTLEITTDIHTVDLHRRDADLALRIVRP-ERGHVTVRQLGKLGFGLYGNKDYLATCSPDI 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +K I + + + F W RP+ ++ +N+ L+ ++ G Sbjct: 186 LRGKYEKARFIGWAETY-SYLPSFRWTEKNLKSRPLS---VATTSLNAQLAAVKA---GL 238 Query: 240 GIALLPDYIVK 250 G+A+LP +IV+ Sbjct: 239 GLAVLPHFIVQ 249 >gi|212637409|ref|YP_002313934.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212558893|gb|ACJ31347.1| Helix-turn-helix, Fis-type [Shewanella piezotolerans WP3] Length = 310 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 7/292 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ L ++++++SR+I+ LE + G++L +R R L LTE Sbjct: 1 MDLNRVQMFAQVVEQGSFTKAAKALGITKATVSRKIAELEADAGVQLLFRTTRALKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + +L+ + +L S +G L+I I+LGQ L FL YP I Sbjct: 61 GANYYNRVHHILSELQNAEDQLSASQQTITGHLKIICPIELGQLYFGQILARFLNAYPQI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L N+ +D+ + D ++ + ++ +L L+ A+P YL P Sbjct: 121 TIDAELTNRKVDVIGEGVDFLFQITEK-RNEALQTYALLNTPKVLMASPKYLAKHGTPQI 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H I P ++ EP+ S L+ N+ + + + G GIA Sbjct: 180 PEDLSQHQCIRLS--TPYVDNSWSLFNGEKWVTFEPK-SRLETNNITLVREAAIEGLGIA 236 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P I +N +LV +++D + P+ + K + F F++ Sbjct: 237 TVPMIIASEAIENGSLVTVLQDYPMKQNLITISMPKRVYLPRKYRVFTEFLY 288 >gi|168261960|ref|ZP_02683933.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349216|gb|EDZ35847.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 303 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F + D++I+ Sbjct: 66 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHSDLRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290 >gi|329890694|ref|ZP_08269037.1| bacterial regulatory helix-turn-helix protein, lysR family protein [Brevundimonas diminuta ATCC 11568] gi|328845995|gb|EGF95559.1| bacterial regulatory helix-turn-helix protein, lysR family protein [Brevundimonas diminuta ATCC 11568] Length = 295 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 19/293 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63 WD + F VA SF+ AA +L LS S++SR+I+ LE + +L +R R + LT+ G Sbjct: 4 WDGIDEFTAVAEQASFSAAARRLSLSTSAVSREIARLEDRLQTRLLHRTTRRVELTDAGR 63 Query: 64 ---SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 S+ R+ E L Q + Q P G LR+ ++ G+ + + F P Sbjct: 64 DFLSRCRRLIDERDEALAAVQPDDQ----APRGLLRMTCSVSYGERFIAPAVNAFARQNP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++I+L LDN+ D+ D D A+R + S L+ R+L + + A+P YL P Sbjct: 120 ELRIELDLDNRLRDLVGDGYDLAVRFGH-LTHSRLMARRLASRRLILCASPDYLARRGAP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + E+ H+ + + E ++ RP G R C NS +++ + G G Sbjct: 179 RDLSEIPSHDGLIGSAEHWRFTEAGREVSL--RPSG--RWRC---NSGAAVLDAALQGLG 231 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LPD+ V + + LV ++++ P V+ +P K++A +++ Sbjct: 232 LCQLPDFYVAEGLASGALVSLLDEARPPDEGVWAVHPHPRHVPPKVRAMIDWL 284 >gi|269104466|ref|ZP_06157162.1| transcriptional regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268161106|gb|EEZ39603.1| transcriptional regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 302 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 109/200 (54%), Gaps = 3/200 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V GSF+ + L+++ SSI+R I LE E+ + LF+R R LTLT++G + Sbjct: 5 IKIFLKVVEVGSFSKTGQILNMAPSSIARNIDQLEKELCVTLFHRTTRQLTLTDEGQDFY 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E+ H + + ++ + P G +RI+ G+ + L +FL YP++++++ Sbjct: 65 QGATELIHNADALFNQTKKQNQHPQGTIRISVFESFGRQWISPLLPKFLAQYPEVKVEIE 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QEL 186 L+N+ +DI+ + D IR+ +P S L R L+ A+P YL N EPL+ +L Sbjct: 125 LENRMVDINSENIDLGIRIGRP-ADSGLHARMLLPNQTWLCASPTYLANS-EPLNCPHDL 182 Query: 187 DKHNLITFGDLIPKCMEDFN 206 + HN + + K FN Sbjct: 183 ENHNCLLLNNDRQKVYWYFN 202 >gi|255745467|ref|ZP_05419415.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|262151281|ref|ZP_06028416.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|255736542|gb|EET91939.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|262030897|gb|EEY49526.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] Length = 253 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 9/254 (3%) Query: 41 LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100 +E + ++L RHAR LTLTE G + ++ S + +L + E+ + SG++RI+ Sbjct: 1 MEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAP 60 Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160 +L + ++ F+ YPDI I+L++ N+ D+ D R+ P + SSLI RK+ Sbjct: 61 SNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKI 119 Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI 220 + A+P YL + +P +EL +H L+ L+ + + V+ G + Sbjct: 120 GEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQA 179 Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEAL 277 S L V + C G GI L+PD +++ ++ +LV+++ D + +Y Y Sbjct: 180 SALNV-----VRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKD 234 Query: 278 KNTGKLKAFRNFIF 291 K++ F +F+ Sbjct: 235 HQPEKVRLFIDFVI 248 >gi|91792145|ref|YP_561796.1| LysR, substrate-binding [Shewanella denitrificans OS217] gi|91714147|gb|ABE54073.1| LysR, substrate-binding [Shewanella denitrificans OS217] Length = 303 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GSF+H A L LS +S+ +S LE +G++L R R ++LTE G++ Sbjct: 5 DAMRAFVSVVTEGSFSHGASHLQLSPQLVSKYVSQLEVRLGVRLLNRTTRKVSLTEAGTE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ +L +P G LRI+ + L + +F + +P + + Sbjct: 65 YFQHAQQILLSIDEMDAQLGGLQQQPKGTLRISAPVSFALKHLGRLVTDFQIAHPLVNVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +DI + D A+R+ + ++SSSLI + + I + A+ YL P ++ Sbjct: 125 LQLNDRKVDIVEEGFDVALRIGQ-LKSSSLIAKHIAPIRVVLCASADYLHKHGTPTCAED 183 Query: 186 LDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + + + + ++WL R S L+ N+ +++ + G+G+ L Sbjct: 184 LKDHKYLHYSYIEMEGKASRYHWL----RGKNNQHNSKLESNNGDVLVEAAIAGAGLVLQ 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I + L+ I+ + +Y Y K++ F +FI Sbjct: 240 PTFIASEAIRQGKLIEILPECEPEPLGLYAVYAHRKLLPNKIRCFIDFI 288 >gi|39933988|ref|NP_946264.1| LysR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192289408|ref|YP_001990013.1| LysR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39647835|emb|CAE26355.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris CGA009] gi|192283157|gb|ACE99537.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris TIE-1] Length = 307 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 9/251 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F V SF A + LS++++S+ ++ LET +G +LF R +R L LT+ G Sbjct: 6 DFEALAIFAKVVELRSFAAVAAEFGLSKATVSKAVTRLETRLGARLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L +++ E + E S P G +R+A + G ++ L EF YPD+ Sbjct: 66 HRLAERAAQLLADGEAAEAEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPEFFAAYPDVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D +R+ + SSL+ R+L + + A+ YL+ P Sbjct: 126 IDLHLSDAMVDLIGDGFDAGVRIAT-LPDSSLVARRLCAMPRYTVASKTYLEAYGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + + L P N RP G L+VN+ +++ + G G Sbjct: 185 MHLAQHRCLGYAYLSTPNTWHYSNDAGDQVAVRPGGP-----LRVNNGEALLPSVIAGLG 239 Query: 241 IALLPDYIVKD 251 IA LP++IV D Sbjct: 240 IADLPEFIVGD 250 >gi|238789516|ref|ZP_04633301.1| LysR substrate binding domain protein [Yersinia frederiksenii ATCC 33641] gi|238722466|gb|EEQ14121.1| LysR substrate binding domain protein [Yersinia frederiksenii ATCC 33641] Length = 294 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 25/270 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F VAR GSFT AA +L L+QS +SR I LE +GI+L R R L+LT+ G Sbjct: 6 NYNDLYLFMQVAREGSFTAAARRLGLAQSGVSRSIRELEERLGIQLLARTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ ++ L+ L PSG +RI + LL L F YPDI+ Sbjct: 66 EQLYQTVESGFNALDMGLTTLAHYRHTPSGTVRINASQHAIDKLLLPKLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + + R + M A P + + P + Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGNGMVAVRITPDMEMAIVATPEHFRRYDFPQTP 185 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQ 233 +L H I + G L + W D RP G+ S +SY+ + Sbjct: 186 ADLVIHPCIVYQFADGSL-------YQWELNQDDKKITHRPQGQWAFS----DSYME-AE 233 Query: 234 YCVLGSGIALLPDYIVKDNPN---LVRIME 260 LG G+A +P+ +V D+ L+R+++ Sbjct: 234 AARLGLGLAYVPEELVADDLERGVLIRVLQ 263 >gi|299769860|ref|YP_003731886.1| transcriptional regulator [Acinetobacter sp. DR1] gi|298699948|gb|ADI90513.1| transcriptional regulator [Acinetobacter sp. DR1] Length = 299 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QN L L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QL++ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL + Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237 + ++L +H +++ + + ++ L D + ++S + N Y+ + Q Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFILHGPDNQQKKVKVSPTVMGTNIYM-LAQLASQ 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD +D + LV+I+ D + YP G L A R FI Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|91780995|ref|YP_556202.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693655|gb|ABE36852.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 307 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 133/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF VA + SF A L +S S++ +++S LE ++G++LF+R R + LT +G Sbjct: 6 INVFVQVAETRSFAAAGRLLGISASAVGKRVSALEEQLGVRLFHRSTRSVALTAEGGLFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E Q EL + ++ P G+L++ ++ L + +F YPD+ + L Sbjct: 66 ERSRRILGEIEAAQAELSQVNLSPRGRLKV--SLPLVAEPFLSVMAQFKQAYPDVDLDLE 123 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D IR S L R+L + M +P YL C P + +L Sbjct: 124 FTDRRVDVIDEGFDAVIR-SGDAPDSRLTARRLGSFSMLLVGSPDYLARCGTPETASDLS 182 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 +H I F P + W D + ++S + N+ + + + + G GIA LPD Sbjct: 183 QHACIQF--RYPNTGKLQVWPLDQDEITADLQLSAAIICNNLETRIFFALQGLGIAYLPD 240 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ + L+ +M +P +L+ F +F+ Sbjct: 241 FAIRQHLAAGRLIHVMPSCSEADTMFRIMWPSGKHFAPRLRVFIDFL 287 >gi|254521073|ref|ZP_05133128.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219718664|gb|EED37189.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 313 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A +GS AA L LS S++ ++I+ LE ++G +LF+R R + LT++G L Sbjct: 21 LLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQDLGTRLFHRTTRRVHLTDEGDLLL 80 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L Q +L + PSG LRI +G L L F YP +Q++L Sbjct: 81 QRCRRALDELSEAQADLAQRQHAPSGLLRIGLPT-IGYRFLLPVLPGFQQRYPQVQLELD 139 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR + SSL R+L AAP YL+ P + EL Sbjct: 140 FNDRIVDVVSEGLDAVIR-SGELADSSLTARRLGGFRFMLCAAPGYLQARGTPGDVSELR 198 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + F P + W L V+ G + + N+ +++ + G+A +PD Sbjct: 199 MHTALRF--RYPTTGKLHPWQLPGVEGDAGAGLPTAMTCNNMEALLAAAIGRMGLAWMPD 256 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 ++ D + L R++ + T +P + +L+ F ++ Sbjct: 257 FLAADALADGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDY 302 >gi|254247307|ref|ZP_04940628.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124872083|gb|EAY63799.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 342 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 25 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 84 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ +L F YPDI ++L Sbjct: 85 EHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELG 144 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 145 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNEIADLV 203 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI----- 241 +H+ + F W+ +D E R++ + VN + + + G G+ Sbjct: 204 EHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 261 Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP + + +LV ++ D + YP + K++ F ++I Sbjct: 262 FMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWI 308 >gi|126456200|ref|YP_001074629.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167848556|ref|ZP_02474064.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167913816|ref|ZP_02500907.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167921727|ref|ZP_02508818.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|242313852|ref|ZP_04812869.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|126229968|gb|ABN93381.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|242137091|gb|EES23494.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] Length = 303 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VVA +G F+ AA QL + SS++R + LE +G+ L R R +TLT+ G+ Sbjct: 7 LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ +P G LR++ + + +L +L FL YP + + L Sbjct: 67 EQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D D A+R+ P + L+ R L A+ YL P + +L Sbjct: 127 VSDAYLDLATDRIDVAVRIGAPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 H + F P +W + D + + + L I++ VL G G+AL+P Sbjct: 187 AHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVPM 242 Query: 247 YIVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ L+ + E +TP VY Y +++ K++ F F+ Sbjct: 243 WLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFL 293 >gi|325206769|gb|ADZ02222.1| putative lysR-family transcriptional regulator [Neisseria meningitidis M04-240196] Length = 299 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 7/253 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN 252 GIA L D++V ++ Sbjct: 235 GIACLSDFLVDND 247 >gi|290476311|ref|YP_003469215.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004] gi|289175648|emb|CBJ82451.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004] Length = 304 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 23/302 (7%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +VF + GS AAE+L +S++ +SR ++ +E G++L +R R ++LT G ++ Sbjct: 8 QVFVTIVEQGSLVAAAERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGENAYQ 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ++ ET ++ S G LR++ + LG + L + EF+ +YP I + L + Sbjct: 68 RSLKLLELAETMPVQQSLVSQTLRGLLRVSCSQSLGTSALSVAIPEFMRIYPQIAVNLQI 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +NK I++ + D AIR+ ++ +LI R L H AAP YL P +L Sbjct: 128 NNKVINLIEERIDLAIRITNNLE-PNLIARPLSICHSVVCAAPSYLDRKIIPQKPTDLAS 186 Query: 189 HNLIT---FGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 HN +T FG L K E ++ P L N +M+ + G+GI Sbjct: 187 HNCLTYNFFGKSLWLFEKQHEQYS----------VPVSGTLSANESTVLMEAALQGAGIT 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARD 296 + P Y + LV ++ D + +Y Y L+A +F+ F A Sbjct: 237 MQPYYSAAPHLISGQLVELLPDYQPQAMGIYGIYTSRQNMPVTLRALLDFLVGWFANAPH 296 Query: 297 WK 298 W+ Sbjct: 297 WQ 298 >gi|188989706|ref|YP_001901716.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris str. B100] gi|167731466|emb|CAP49641.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris] Length = 329 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 3/244 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L + R GSFT AA +L +SQS++S I GLE +G++L R R + TE G +L Sbjct: 41 LLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAGERLI 100 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++E L E P+G +RI T + +L L L YPDI+++L+ Sbjct: 101 QTVAPRFAEIEEALSALSEMRDTPAGSVRITATDYAAREILWPKLAVLLRQYPDIKVELV 160 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +DN DI D D +RL ++ + R + M A+P YL+ P + Q+L Sbjct: 161 VDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMALIASPAYLERRPLPRTPQDLT 220 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H I + + W L R I L NS + + G GIA + + Sbjct: 221 AHLCINL--RMTSAGGIYAWELEKDGREIAVRVEGQLTFNSIYEALDAALQGFGIAFVQE 278 Query: 247 YIVK 250 + + Sbjct: 279 DLAR 282 >gi|307727486|ref|YP_003910699.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307588011|gb|ADN61408.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 336 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 9/285 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-RV 69 F VA GSF A E+L + +SS+SR + LE ++ ++LF R R +LT +G + R Sbjct: 31 FLAVANEGSFARAGERLGIGRSSVSRNVQKLEAQLEVRLFLRTTRKTSLTREGELFYERC 90 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V +E + S P G LRIA+T G+ ++ L+ F YPDI ++L+L Sbjct: 91 LPGVERIVEALDGMRELRSGPPRGHLRIASTPGFGRRVVAPLLRGFHARYPDITLELLLS 150 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + D + D D + R + ++ S ++ R+L+ + M A+P Y + P +++L H Sbjct: 151 ERVADFTTDRVDVSFRDGR-MEDSGIVARQLIAMQMVVCASPAYARVHGLPRCVEDLAGH 209 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDYI 248 I F + +W VD + + + N I+Q + G GIA LP Y Sbjct: 210 RCINFCTASGRVK---DWEFKVDGHLVRHQPTAQHTFNDADLILQAVLDGVGIAQLPAYQ 266 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV + Y CY +++ F +++ Sbjct: 267 VSALLRERRLVSCLAQHAPDDGGHYICYLSRKHLPARIRVFVDYM 311 >gi|90417395|ref|ZP_01225320.1| hypothetical transcription regulator protein [marine gamma proteobacterium HTCC2207] gi|90330837|gb|EAS46106.1| hypothetical transcription regulator protein [marine gamma proteobacterium HTCC2207] Length = 300 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 20/270 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V +GSFT AAE + SS+SR+I+ LE +G L R R + +TE G Sbjct: 7 LRYFSKVVETGSFTRAAEAFSVPPSSLSRRIADLEKTLGANLLKRSTRVVQVTEIGQLYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +LE + ++ KP G LRI+ + G+ +L L EF LYP+I + L Sbjct: 67 KQVEDILAQLEQSDETVRSYQAKPKGVLRISAMVSFGERMLLPLLDEFKTLYPEIILDLS 126 Query: 128 LDNKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L ++ +S D D AIR + +Q+ L+ + + + AA YL P Sbjct: 127 LSDELSTLSRDDVDIAIRGGYAPNERVQAVRLMDNEFIPV-----AAASYLAAIGTPTKA 181 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 EL +H + F G C D WL G P I N+ + Q + G Sbjct: 182 TELKQHQGLFFRTPAGPSPWLCQMDGQWLDVS----GSPAIIS---NNGKWLGQQAINGR 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTV 269 GI + P ++++D + + E I P+ V Sbjct: 235 GIMMAPRWLMQDYFDSGELQELFIEPTLRV 264 >gi|325129513|gb|EGC52340.1| putative lysR-family transcriptional regulator [Neisseria meningitidis OX99.30304] gi|325135636|gb|EGC58253.1| putative lysR-family transcriptional regulator [Neisseria meningitidis M0579] gi|325201503|gb|ADY96957.1| putative lysR-family transcriptional regulator [Neisseria meningitidis M01-240149] gi|325207483|gb|ADZ02935.1| putative lysR-family transcriptional regulator [Neisseria meningitidis NZ-05/33] Length = 299 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 7/253 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSAEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN 252 GIA L D++V ++ Sbjct: 235 GIACLSDFLVDND 247 >gi|330975295|gb|EGH75361.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 309 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 15/288 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA GSFT AAE+L+L+ S+IS+ I+ LE + +LF R R L+LTE G +R Sbjct: 12 VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE +I L + +P GK+RI G+ + + +F+ +P +Q + Sbjct: 72 CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131 Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D + D +R+ +++ + T + A+P Y+ +P ++ +LD Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNRYGQPKTVSDLDD 191 Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I +G IP + ++R I P I+ V + + G GIA L Sbjct: 192 HQCIGYGQNDGMAIPWYFKGRQ-PGDMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247 Query: 245 PDYIVK---DNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286 P ++V+ ++ LV ++ D+ T P V+ EAL L A+ Sbjct: 248 PTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295 >gi|330941893|gb|EGH44618.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 309 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 15/288 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA GSFT AAE+L+L+ S+IS+ I+ LE + +LF R R L+LTE G +R Sbjct: 12 VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE +I L + +P GK+RI G+ + + +F+ +P +Q + Sbjct: 72 CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131 Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D + D +R+ +++ + T + A+P Y+ +P ++ +LD Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNQYGQPKTVSDLDD 191 Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I +G IP + ++R I P I+ V + + G GIA L Sbjct: 192 HQCIGYGQNDGMAIPWYFKG-RQPGGMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247 Query: 245 PDYIVKDNPN---LVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286 P ++V+ + N LV ++ D+ T P V+ EAL L A+ Sbjct: 248 PTWLVQCHLNSGILVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295 >gi|328470766|gb|EGF41677.1| LysR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 300 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 8/290 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA + L++S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 5 DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 VY + T + + SG ++I G+ +L G + EF YPDI I Sbjct: 65 FFVHAKAVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI + D AIR + SSLI RKLV + A+P YL P E Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L KHN + + E W D + + + L N+ ++ +LG G+ + Sbjct: 184 LTKHNCLVYSYQETGARE---WAFKADDKMYQVTVDGNLCTNNSSALRNVALLGQGVIYV 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P +V ++ +L+++ ++ +Y YP + K+K F + ++ Sbjct: 241 PRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290 >gi|330900081|gb|EGH31500.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. japonica str. M301072PT] Length = 309 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 15/288 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA GSFT AAE+L+L+ S+IS+ I+ LE + +LF R R L+LTE G +R Sbjct: 12 VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE +I L + +P GK+RI G+ + + +F+ +P +Q + Sbjct: 72 CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131 Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D + D +R+ +++ + T + A+P Y+ +P ++ +LD Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNQYGQPKTVSDLDD 191 Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I +G IP + ++R I P I+ V + + G GIA L Sbjct: 192 HQCIGYGQNDGMAIPWYFKG-RQPGDMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247 Query: 245 PDYIVK---DNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286 P ++V+ ++ LV ++ D+ T P V+ EAL L A+ Sbjct: 248 PTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295 >gi|261823042|ref|YP_003261148.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607055|gb|ACX89541.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 301 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + F V +GSF AAE LH+ S+++R I LE+ +G +L R R L++T+ G Sbjct: 4 FQAMETFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITDVGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + + + G +RI T L +N L L +F +P I++ Sbjct: 64 RYYDSCKAILRDVHAAESVTAQQKEELQGTIRIGATPSLVKNFLIPALPDFCERHPGIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +DI DC IR +P S L+ R L H A+P YL+ P ++ Sbjct: 124 DFHLGDATVDIVQQGIDCVIRTGEP-PLSRLVARHLGAFHWTICASPRYLEQHGYPTTLD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H + G + +W + P + VN + + V G G+ Sbjct: 183 SLKDH--VAVGYTHSRAGRSVSWGFHDEAHTVAIPLAGQISVNDTDAYLAAGVAGLGLLR 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + Y+V+ + +LVR++ D+ P ++ YP++ + ++AF ++ Sbjct: 241 IASYMVRQQLSDGHLVRLLPDLEAPLEPIFILYPQSRHLSPVIRAFIDW 289 >gi|209551915|ref|YP_002283832.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537671|gb|ACI57606.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 297 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 20/302 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+ + L +F SG FT AA L + +S++S++++ LE +G++L R +R LTE Sbjct: 4 FNLNDLHLFVQAVDSGGFTAAARHLGIPKSTVSKRVAELEGRLGVRLIQRTSRSFALTEL 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + E + ++ +P+G +R+ ++ Q L +L YP + Sbjct: 64 GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ + + ++ +DI + D A+R R P+ S+L+QRKL + A+P Y++ +P Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRAPLPDSALVQRKLASHPFLILASPEYIRAHGQPR 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237 +EL +H I + D W D G+ + LQ + +M+ Sbjct: 184 RPEELTQHATIM------TSLTDNQWWLYCDN--GDESLVTLQPIMAADEPFVLMEAAAA 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLK 293 G GI LP + + LVR++ D + P G+L A R + FL Sbjct: 236 GLGITCLPTSVCRKALATKRLVRLLPDWTAGNIETTILMPH---RRGQLPAVRAVVDFLA 292 Query: 294 AR 295 R Sbjct: 293 ER 294 >gi|159042911|ref|YP_001531705.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157910671|gb|ABV92104.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 293 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 10/296 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R + VAR G+ + AAE L + +++ R I LE +G+KLF RHARG T T+ G Sbjct: 5 NWDEVRTAFQVARLGTVSGAAEVLGVHHATVIRHIDSLEGRLGVKLFQRHARGYTATDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +V +LE L + +G+L I T++++ L+ L EF + D+ Sbjct: 65 KDLLQVAQVTADQLEQLSGRLHGHGAQVTGELVI-TSLEILSPLIAPVLAEFQREHRDVM 123 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++LI D + + A AIR RKP +++Q L M + P YL + P+ Sbjct: 124 VKLITDARVFRLEYGEAHVAIRAGRKPEDPDNIVQ-PLYIQKMAFFGTPEYL-DTHGPIE 181 Query: 183 I-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I + H ++ G + + FN + P R+ + + V G G Sbjct: 182 IGGDYAGHRIV--GSTLDEPRAPFNIWMQENMP--AERV-VYRASDIRGAGDAVVAGVGA 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LLP + P +VR+ + + S ++ L T K+++F + A+ W Sbjct: 237 GLLPVWWADKYPGVVRLCDPIDAWSSRIWLITHVDLHRTAKVQSFTGSLKAAAKAW 292 >gi|116049812|ref|YP_791381.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296389746|ref|ZP_06879221.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110563|ref|ZP_07796448.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|115585033|gb|ABJ11048.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] gi|310882950|gb|EFQ41544.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 295 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 14/279 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L+ F V SGS + AAEQ+ L+ S++SR +S LE ++G L R R + LT Sbjct: 1 MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ ++E + L P+G+LRI + + ++ EF LYP Sbjct: 61 EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ++L ++ ID+ D AIR+ + S+L R L +H A+P YL P Sbjct: 121 NIQLELNTNDLIIDLLEQRTDVAIRI-GALSDSTLHARPLGASRLHILASPEYLARHGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 SI+ L H L+ F P+ + + + A DR +P IS +S ++ Q + Sbjct: 180 TSIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLALSHQ 234 Query: 240 GIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYF 271 GIA L ++ ++D P M + P VY+ Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYY 273 >gi|260769265|ref|ZP_05878198.1| transcriptional regulator LysR family precursor [Vibrio furnissii CIP 102972] gi|260614603|gb|EEX39789.1| transcriptional regulator LysR family precursor [Vibrio furnissii CIP 102972] Length = 303 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 10/255 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A+ +FT AAE+L+L++S++++ +S LE +G+KL +R R LTLT +G + Sbjct: 12 AFVCTAQHKTFTAAAERLNLTKSAVAKSVSRLEERLGVKLLHRSTRQLTLTPEGEAYLKS 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ +LE + LQ KPSGKLRI G+ + L YP++ + + + Sbjct: 72 CLDILGQLECAEALLQAKVDKPSGKLRIDLPAAFGRKKVLPLLLAMSAQYPELSLAVTFN 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI + D +R+ + +SS L+ R L M AAP Y+ P S +L H Sbjct: 132 ERFVDIVEEGLDVVVRIGELQESSGLVARHLTVQKMVMCAAPDYVARRGVPSSFDDLKNH 191 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYL---SIMQYCVLGSGIALLP 245 + + + K + +W+ V GE R + + +I + + G GI+ LP Sbjct: 192 DCV----VSLKQNQPLSWV--VKNCDGETVRFKPPATHEFSDGDAIREAVIAGCGISQLP 245 Query: 246 DYIVKDNPNLVRIME 260 ++++D+ R+ E Sbjct: 246 LWLIRDDLQAGRLQE 260 >gi|260870247|ref|YP_003236649.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257766603|dbj|BAI38098.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] Length = 323 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+HAA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSHAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|222109838|ref|YP_002552102.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221729282|gb|ACM32102.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 300 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 22/298 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + LR F VA + SFT AAE+LH+++ +S QI LE +G LF+R R +TLT+ G Sbjct: 7 DLNLLRAFLAVADARSFTAAAERLHIARPQVSLQIRRLENVLGAALFHRTTRTVTLTDAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +L ++ + LE LQ + + S G+LR++ ++ ++ + EF + +P Sbjct: 67 QRLFEESAPLMQGLEQV---LQHAGSRGSGLRGRLRVSAPVEYAVQVMSPVVAEFAVRHP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L++ +K D+ + D +IR+ +++SS KL A+P YL C P Sbjct: 124 EVSLELVVSDKVQDLVGEGIDVSIRVGW-LRNSSARVAKLGEFGQAVLASPEYLARCPRP 182 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + ++L H I L+P + W T R++ L+ +S +++ + G+ Sbjct: 183 EAPEDLAHHRWIAL-TLLPAPL---TWSFTNGTKDITVRMAPKLRTDSAVALRALLLNGA 238 Query: 240 GI---ALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 G+ +LL ++ D + LVR++ + P VY YP T A R F+ L Sbjct: 239 GVSVGSLL--HLESDIRSGALVRLLPEWTLPKGGVYAVYP---PGTAIAPAARAFVEL 291 >gi|114328437|ref|YP_745594.1| LysR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316611|gb|ABI62671.1| transcriptional regulators, LysR family [Granulibacter bethesdensis CGDNIH1] Length = 305 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 137/298 (45%), Gaps = 20/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ LR F VA SF+ AAEQL +S S++S+ I GLE +GI+L +R R ++LTE G Sbjct: 9 EFGALRAFAAVAEQRSFSRAAEQLGVSSSALSQLIRGLEERLGIRLLHRTTRSVSLTEAG 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + L + L T +E ++ K P+G +R+ + L +PDI Sbjct: 69 AALLGDIAPAIDSL-TGALEQARTAAKLPAGTVRLHCFHAAADRFVVPILPRLARAFPDI 127 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L +D+ +DI D AIR+ + I+ + R I A AAP YL P + Sbjct: 128 TLDLTIDDTVVDIVGSGYDAAIRIGEVIERDMVALRLGEDIRQLAVAAPAYLAEHGVPQT 187 Query: 183 IQELDKHNLITF---GDLIPKCMEDF---NWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L +H I + G P E F +W + V+ P L +S ++ Sbjct: 188 PKDLLQHRCIRWRWPGQPGPYAWEFFEKGHWFSVAVEGP--------LITSSRAVMVDAA 239 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA L + V D LV ++ + P Y CYP+ + L+A + I Sbjct: 240 LAGIGIAFLKEESVVDAFAQGALVPLLAEWSVPFPGYYLCYPQQRQMAPALRAVIDMI 297 >gi|315181802|gb|ADT88715.1| Transcriptional regulator [Vibrio furnissii NCTC 11218] Length = 303 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 10/255 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A+ +FT AAE+L+L++S++++ +S LE +G+KL +R R LTLT +G + Sbjct: 12 AFVCTAQHKTFTAAAERLNLTKSAVAKSVSRLEERLGVKLLHRSTRQLTLTPEGEAYLKS 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ +LE + LQ KPSGKLRI G+ + L YP++ + + + Sbjct: 72 CLDILGQLECAEALLQAKVDKPSGKLRIDLPAAFGRKKVLPLLLAMSAQYPELSLAVTFN 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI + D +R+ + +SS L+ R L M AAP Y+ P S +L H Sbjct: 132 ERFVDIVEEGLDVVVRIGELQESSGLVARHLTVQKMVMCAAPDYVARRGVPSSFDDLKNH 191 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYL---SIMQYCVLGSGIALLP 245 + + + K + +W+ V GE R + + +I + + G GI+ LP Sbjct: 192 DCV----VSLKQNQPLSWV--VKNCDGETVRFKPPATHEFSDGDAIREAVIAGCGISQLP 245 Query: 246 DYIVKDNPNLVRIME 260 ++++D+ R+ E Sbjct: 246 LWLIRDDLQAGRLQE 260 >gi|22127421|ref|NP_670844.1| transcriptional regulators [Yersinia pestis KIM 10] gi|45442713|ref|NP_994252.1| LysR family regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|108809150|ref|YP_653066.1| LysR family regulatory protein [Yersinia pestis Antiqua] gi|108810659|ref|YP_646426.1| LysR family regulatory protein [Yersinia pestis Nepal516] gi|145597726|ref|YP_001161802.1| LysR family regulatory protein [Yersinia pestis Pestoides F] gi|150260336|ref|ZP_01917064.1| LysR-family regulatory protein [Yersinia pestis CA88-4125] gi|165925035|ref|ZP_02220867.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937834|ref|ZP_02226395.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008721|ref|ZP_02229619.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212176|ref|ZP_02238211.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398889|ref|ZP_02304413.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419249|ref|ZP_02311002.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426396|ref|ZP_02318149.1| LysR-family regulatory protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466783|ref|ZP_02331487.1| substrate-binding transcriptional regulator, LysR family protein [Yersinia pestis FV-1] gi|170022858|ref|YP_001719363.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|218927825|ref|YP_002345700.1| LysR family regulatory protein [Yersinia pestis CO92] gi|229837308|ref|ZP_04457471.1| LysR-family regulatory protein [Yersinia pestis Pestoides A] gi|229840522|ref|ZP_04460681.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842933|ref|ZP_04463084.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229900851|ref|ZP_04515975.1| LysR-family regulatory protein [Yersinia pestis Nepal516] gi|270487773|ref|ZP_06204847.1| LysR substrate binding domain protein [Yersinia pestis KIM D27] gi|21960511|gb|AAM87095.1|AE013957_10 putative transcriptional regulators [Yersinia pestis KIM 10] gi|45437579|gb|AAS63129.1| LysR-family regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|108774307|gb|ABG16826.1| LysR-family regulatory protein [Yersinia pestis Nepal516] gi|108781063|gb|ABG15121.1| LysR-family regulatory protein [Yersinia pestis Antiqua] gi|115346436|emb|CAL19308.1| LysR-family regulatory protein [Yersinia pestis CO92] gi|145209422|gb|ABP38829.1| LysR-family regulatory protein [Yersinia pestis Pestoides F] gi|149289744|gb|EDM39821.1| LysR-family regulatory protein [Yersinia pestis CA88-4125] gi|165914246|gb|EDR32862.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923235|gb|EDR40386.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992060|gb|EDR44361.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206922|gb|EDR51402.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963243|gb|EDR59264.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051393|gb|EDR62801.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054619|gb|EDR64426.1| LysR-family regulatory protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749392|gb|ACA66910.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis YPIII] gi|229682190|gb|EEO78282.1| LysR-family regulatory protein [Yersinia pestis Nepal516] gi|229689999|gb|EEO82057.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696888|gb|EEO86935.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705431|gb|EEO91441.1| LysR-family regulatory protein [Yersinia pestis Pestoides A] gi|270336277|gb|EFA47054.1| LysR substrate binding domain protein [Yersinia pestis KIM D27] gi|320016810|gb|ADW00382.1| LysR-family regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 310 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSFT AA+ L L ++ +S+++S LE +G++L R R L LTE G Sbjct: 7 MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + L+ SV+P GKLR+ + + + ++ +L EF YP+I ++L Sbjct: 67 AKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + DCAIR ++ SS I R + +H+ YAAP YL+ QEL Sbjct: 127 GSDRISHLLDNGIDCAIRGGH-LEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELS 185 Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I++ G P F W L + P L + + C+ GSGI Sbjct: 186 VHRRISWFTGQRNP-----FIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V+ LV ++ + ++ YP + +++ F ++ Sbjct: 241 APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288 >gi|322832347|ref|YP_004212374.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321167548|gb|ADW73247.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 290 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 13/290 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F V R+G+ AAEQL + Q+++ R+++ LE +G KLF + +G LT Sbjct: 1 MNWDDVRIFLAVYRAGTLRSAAEQLSVDQTTVGRRLNTLEKLLGSKLFLKSRQGWVLTAG 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G K+ + E+ + + + G++ + T L + + ++ +P+I Sbjct: 61 GRKILSLAEEIERLTVSFERRGSGDDDRLEGEVHVTATDSLAIDFVLPAIERVQHNFPNI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L +DI AD A+R +P Q LI RKL + + +A Y+ P Sbjct: 121 RVNLTTTTHLLDIGRREADIAVRTIRPEQ-PDLITRKLASREVGLFATHKYIDRFGIPEP 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239 + D H + + I + + LA GEPR +++S + + + G Sbjct: 180 GKGFDGHRIALYQSGITRSQDGL--LA------GEPRHKGRVVAELDSSMMLATFIRAGL 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRN 288 + LPDY+ K P L+R+ + S + V+ + L +T +++A N Sbjct: 232 ALGELPDYLAKMYPELIRLWPERTRKSPYEVWLVMHQDLSHTARVRAVMN 281 >gi|254189324|ref|ZP_04895835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|157937003|gb|EDO92673.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] Length = 300 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL + P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLAHAGMPGTLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|254521485|ref|ZP_05133540.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219719076|gb|EED37601.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 302 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 13/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR + +GSFT AAE+L + S++SRQ+ LE + ++L R++R L+LTE G + Sbjct: 7 LRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGRGYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + + +L+ + + +PSG +RI+ + L L FL YP + + L Sbjct: 67 REAASLLDRLQEADEQARAGQAQPSGTVRISVPQVVASQELPHWLPSFLQRYPQVALDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D++ +D+ D A+R+ + S L+ R+L + AAP YL P +L+ Sbjct: 127 ADDQLVDVVGGRFDLALRIAPSLPDSQLVARELASCPRILVAAPAYLARHGLPRQAADLE 186 Query: 188 KHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H L+ F +P AT G+ L+V++ ++ + G GI+L Sbjct: 187 QHALLGFSPTASMPPWQLHGPRGATASIEAGQ----RLRVDATPALYAAALAGMGISLFT 242 Query: 246 DYIVKDNPNLVRIMEDVITPSFTV----YFC-YPEALKNTGKLKAF 286 V+++ R++ + P++ YF YP A K++A Sbjct: 243 ALTVQEDLRAGRLIR--VLPAWHAGQRRYFALYPHARALAPKVRAL 286 >gi|118472322|ref|YP_885777.1| LysR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173609|gb|ABK74505.1| transcriptional regulator, LysR family protein [Mycobacterium smegmatis str. MC2 155] Length = 299 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 7/288 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F D LR F VAR+G AA L + +++ R+I+ LE +G +LF R G LTE Sbjct: 5 FSADNLRYFLEVARTGRLNDAARNLGVDHTTVGRRITALEKSIGERLFDRSPGGWQLTEA 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L +E E + S+ +G + +ATT G +L L + +P + Sbjct: 65 GADLF-PRAETVESAVIAAYETRTSAGPLTGTVSVATTDGFGAFVLAPRLADLRRRHPHL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I++ + +S + D A+ L +P L+Q L + YA P YL + Sbjct: 124 DIEMATATEHRSLSARHFDIAVTLEEPPSRGVLVQ-ALAGYDLRLYATPGYLDDAPPIDE 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + +L +H LI + D + D L + + R++ +Q N+ G GIA Sbjct: 183 LADLARHTLIWYID----ALLDVAPLRILGLLPHKQRVA-IQTNNITGHWLAARGGLGIA 237 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP YI + +P L ++ + + P L+ G+++A F+ Sbjct: 238 PLPQYIAESDPELTCVLPQEFSVRRRYWMVIPRELRQVGRVRAVAQFL 285 >gi|172061917|ref|YP_001809569.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994434|gb|ACB65353.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 320 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVVVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185 Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN + + ++ + D + V+ L VN + + G+GIA Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|254254201|ref|ZP_04947518.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124898846|gb|EAY70689.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 303 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 21/298 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE + ++L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ + ++ P G +R+ N + L +F YPD+++ + Sbjct: 67 ERCTRLLADLDDAETLFDDAGASPRGVVRVDLPERFALNQVIPALPDFHARYPDLRVAIS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R + +SL+ R++ + A+P YL P S EL Sbjct: 127 TTDRFVDLVADGIDCAVRAGT-LSDTSLVARRIGELAQVNCASPAYLARHGTPRSPDELP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + + +W T D GE S + VNS + + CV G G+ Sbjct: 186 DH--VAIGYVSSRTSRELDWEYT-DMDTGELHTVKMRSIVSVNSSHAYLACCVAGLGLIQ 242 Query: 244 LPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P ++ D +LV ++ + P V YP G+ A R IF+ DW Sbjct: 243 APREGLAPLLADG-SLVEVLPEWHAPPLPVSVVYP-----YGRHLAPRVRIFV---DW 291 >gi|187924372|ref|YP_001896014.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715566|gb|ACD16790.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 304 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 18/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF+ AA +L L Q ++S+ ++ LE +G +L R RGL T G + + Sbjct: 7 METFVTVVDAGSFSAAARRLKLGQPAVSKAVAQLEERLGARLLLRSTRGLAPTAAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 H+ + + ++ESS SG+LR+ + + + LK FL +P++ I ++ Sbjct: 67 EHALRAIHEADQAEQAVRESSDGLSGQLRVGAAVTFARLHVLPALKPFLDQHPNLSIDIV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ + D A+R+ + SS+ R++ P Y P + +L Sbjct: 127 LDDRSVDLLEEGVDVALRM-GTLDDSSMTARRIANGRRLVVGTPSYFAEAGLPQTPLDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-----MQYCVLGS-GI 241 +H + + + E +WL + D + S + ++ +S+ M+ VL G+ Sbjct: 186 RHQAVVYS--LRGGGE--SWLFSRD----DGSDSTVTLSGRISVNAAEGMRTAVLAHMGL 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+ +++ N + ++ D P+ V+ +P T K +AF F+ Sbjct: 238 AVASEWMFAPELANGTVQAVLTDWSLPTIDVWAVFPAGRMATTKARAFVAFV 289 >gi|239817992|ref|YP_002946902.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239804569|gb|ACS21636.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 308 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 15/303 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F A SGSF+ AA +L L+ +++S+ ++ LE +G++LF R R LTLTE G + Sbjct: 5 NHLQSFVQSAESGSFSAAARRLGLTPAAVSKNVARLEARLGVRLFQRSTRRLTLTEGGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ L + +P+G L+++ G+ + + +FL YP I Sbjct: 65 FLGQIGGALATLQDAVAGLSKDDGQPAGTLKVSMGQAFGREHVLPMMGDFLARYPSILPD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 DN+ +D+ + D AI + S ++ R+L IH+ A AAP YL P E Sbjct: 125 WHFDNQQVDLVGEGFDAAIGGGIEL-SPGVVARELARIHVVAVAAPAYLAGRALPTQPAE 183 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L + + + G L ++ ATV+ P PR N +I ++G Sbjct: 184 LAQLDALLRRSSPTGRLRSWTLQHAGGDQATVELP--RPRAI---FNDPEAIAHAALMGL 238 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+A+LP V+ + LVR++ + + V+ YP K + F +F+ + R Sbjct: 239 GVAMLPMPFVERGLRSGELVRLLPEWHFDAGAVWLYYPSKKLLPAKTRVFIDFVLERFRS 298 Query: 297 WKF 299 +F Sbjct: 299 ERF 301 >gi|163858241|ref|YP_001632539.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163261969|emb|CAP44271.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 336 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 15/294 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR- 68 F VA GSF+ A E+L + +SS+SR + LE + +LF R R +LT +G + + Sbjct: 35 AFMAVATEGSFSKAGERLGIGRSSVSRSVQRLEQHLKTRLFLRTTRATSLTREGERFFKH 94 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V H L+ S P G LR+++ I G+N++ L +F YPDI ++L+L Sbjct: 95 CHIGVSHIAGAVNDMLELRSGPPRGLLRVSSGIGFGRNVVAPLLLQFSEAYPDISVELLL 154 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ +D + D D A + + ++ S ++ ++LV + M A+P Y P ++ EL + Sbjct: 155 NDRPVDFAGDRIDVAFQDGR-LKDSCVVAKQLVPMQMVVCASPAYADARGLPATLDELGQ 213 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALL 244 H+ I + +E W V G+ R S L N + Q + G GIA + Sbjct: 214 HDCINMTCSSGRVLE---WEFMVQ---GQVRTFLPSSKLTFNDAYLVRQAVLDGRGIAQV 267 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V+D LV + Y CY +++ F +++ + R Sbjct: 268 SAHQVRDCLRRGELVTALTQYAAKDRGHYICYLSREHLPARVRVFVDYMTAQIR 321 >gi|77458197|ref|YP_347702.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382200|gb|ABA73713.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 299 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 143/292 (48%), Gaps = 13/292 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT AA+QL LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMDSGSFTAAADQLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E+ + + + +P G +R++ + L L FL Y ++ + Sbjct: 64 SYYESALRLLGEVESVEQGIAGQTAEPRGAIRVSAPLSFALAHLGCLLPPFLQRYREVTV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ S+LI R++ +I A+P YL P+ + Sbjct: 124 EVDLSDRPVDLLGEGYDLALRI-GVLEDSTLIARRIASIERVYCASPAYLAERGAPVRPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H+ + +G W A +P+ ++VN+ + V G GI Sbjct: 183 DLLGHDCLPYGH-----GRSVQWRFNAGQGKPLLVNVTGRMRVNNGELLRDAAVAGMGIT 237 Query: 243 LLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV KD LV ++++ T+ YP+ + + ++A F+ Sbjct: 238 YLPTFIVGAALKDG-RLVPVLDEFRPEPLTLSAVYPQHRQASRPVQALIEFL 288 >gi|294663920|ref|ZP_06729352.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606312|gb|EFF49531.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 338 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 8 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 68 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPRYLDRAGRPKD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 240 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293 >gi|254251241|ref|ZP_04944559.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124893850|gb|EAY67730.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 320 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 20/295 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAARFPDVTVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPDYLAKHGTPQTIGD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN-----SYLSIMQYCVL-GS 239 L HN + D N I S + +N ++L ++ VL G+ Sbjct: 186 LATHNYLR---------RDSNSTMLDSLVIDAAAASRVTLNGNLIVNHLEGLRAAVLAGA 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 GIALL +V D+ LV ++ D + P +Y Y + K+++F +F+ Sbjct: 237 GIALLGTEVVGDDIESGRLVPLLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFL 291 >gi|115358758|ref|YP_775896.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284046|gb|ABI89562.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 311 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 134/302 (44%), Gaps = 11/302 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D++ +R+F V GSFT A+ QL + S +SR++ LE ++G++L YR R +++TE Sbjct: 12 MDFESIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 71 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + L + + P G LR+ +G L+ L EF YP + Sbjct: 72 GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 131 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI DN +D+ D A+R + S + R L H A+P YL+ P + Sbjct: 132 QLVLIYDNSPLDLVEHGFDVALRA-GMLTDSGYVARSLGWSHAKLAASPAYLERVGRPRT 190 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL +H+++ G P A D PI IS N +++++ G G Sbjct: 191 PHELAQHDILYVGRDAPGLTLRLTNAAGDVADVPIRPVLIS----NESITVLRQAASGGG 246 Query: 241 IALLPD-YIVK--DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IAL+ YI + + L ++ D T ++ YP K++ F F+ Sbjct: 247 IALISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTG 306 Query: 297 WK 298 W+ Sbjct: 307 WR 308 >gi|289677239|ref|ZP_06498129.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae FF5] Length = 302 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 141/290 (48%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGS T A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDITPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE + + + +P G LR++ + L L FL Y ++ + Sbjct: 64 SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYREVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ + +G W D+P+ ++ N+ + + + G GI Sbjct: 183 DLHTHDCLPYGH-----SRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITY 237 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 238 LPTFIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|317053057|ref|YP_004119411.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316953384|gb|ADU72855.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 303 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 96/183 (52%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F + A+ GSFT AAE+L L++S++ + + LE +G+KLF R R L+LT +G + Sbjct: 12 AFVITAQLGSFTAAAERLSLTKSAVGKSVGRLEDRLGLKLFQRSTRHLSLTPEGERFLAS 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + EL +P+G+LR+ G+ + L + YP++ + + Sbjct: 72 CQSAIEILEQAEAELTSQIAQPAGRLRVDVPAAFGRQRILPILLDITRHYPELSLTVTFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D IR+ + SS LI R+L T + A+P YL+ EP S EL +H Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLIARRLTTQKLVVCASPGYLREQGEPASPSELSQH 191 Query: 190 NLI 192 + + Sbjct: 192 HCV 194 >gi|239503475|ref|ZP_04662785.1| LysR family transcriptional regulator [Acinetobacter baumannii AB900] Length = 306 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 10/285 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ + GS A +L+L+ ++SR+++ LE +G++L R R ++LT +G Sbjct: 6 ELAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLTSEGEVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + + S P G LR+ + G++ + + F +YPD+ +QL Sbjct: 66 FENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYPDVDVQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ + D +IR + I S LI +KL A+P YLK +PL+ +L Sbjct: 126 HLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKKAGQPLTPHDL 184 Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 +H I +I + + NW + + + ++ L N + + + G GI + Sbjct: 185 TQHQCI----VIRQNDSAYGNWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGYGILMR 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ V + LV+++ D TP VY Y E L + K+ F Sbjct: 241 AEWDVAKYLRSGRLVQVLADYETPPADVYAVYLERLNLSPKVAHF 285 >gi|206579244|ref|YP_002236117.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|290511907|ref|ZP_06551275.1| LysR family transcriptional regulator YhjC [Klebsiella sp. 1_1_55] gi|206568302|gb|ACI10078.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|289775697|gb|EFD83697.1| LysR family transcriptional regulator YhjC [Klebsiella sp. 1_1_55] Length = 299 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 135/301 (44%), Gaps = 21/301 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE L L + S+SRQI LE+ +G++L +R R + LT+ G + Sbjct: 7 MQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SG+LR+ + + L+ +L FL YP I+++L Sbjct: 67 ERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKLVIPHLPTFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + A+P YL P S+++L Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLIARPLGKLTQINCASPDYLARFGYPQSLEDLA 185 Query: 188 KHNLITFGDLI---PKCME-----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H LI + + P E W+ T L VNS + C+ G Sbjct: 186 DHALIHYASTLGVRPPGFEVVIDGAVRWIKTG---------GILTVNSTETYQAACIAGL 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI +P V++ +L I+ V YP + ++ F ++ +D Sbjct: 237 GIIQVPRTGVREALRAGDLTEILPQYRAEPLPVSLIYPHRRNLSRRVHLFMEWLGGLMKD 296 Query: 297 W 297 + Sbjct: 297 Y 297 >gi|71735958|ref|YP_275765.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556511|gb|AAZ35722.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 302 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H+ + +G W V G+P I ++ N+ + V G G Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP +IV + +LVR++ D+ T+ YP+ + + ++AF F+ Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLYDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|254255290|ref|ZP_04948606.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124901027|gb|EAY71777.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 303 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 9/287 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ SF+ AA L + S++SR++S LE +G L R R L+LT QG Sbjct: 6 DLNDIAVFVRVAQFESFSRAARALGMPVSTVSRKVSALEERLGATLLQRTTRKLSLTAQG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 SE L + + ++ KP G LRI+ + L Q L FL YP IQ Sbjct: 66 RAYFDQCSEPLSHLYDAERVITQTQKKPEGVLRISGPVMLEQEPFYAFLSAFLKDYPQIQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L N ID+ + D AIR + +Q SSL+ +++ + Y + P Sbjct: 126 VDLYFTNAFIDLIAENVDIAIRFGE-LQDSSLVAQRVGRSVRQLVVSADYARTHTLPSRP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +EL +H + LI + W R + +S + + + + + G GIA Sbjct: 185 EELSQHPCV----LINARNNETEWQLVSRRKAVKVHVSGPVAARDFHIVHAFALRGHGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LLP + LV ++ + +P V+ YP KLKAF Sbjct: 241 LLPSSYCDPHIASGELVHVLPEWSSPEIFVHAVYPTRRFMPSKLKAF 287 >gi|254449652|ref|ZP_05063089.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198264058|gb|EDY88328.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 292 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 10/298 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R + VAR G+ + AA+ L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 3 NWDEIRTAFQVARIGTVSGAADVLGVHHATVIRHIDALEQRLGVKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +V + + ++ SG L + + I L +L L +F PD+ Sbjct: 63 QDLMQVAAATDDQFTQLAGRIRGQGEGVSGDLVVTSLIML-SPILTPVLAKFRRENPDLT 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ + A AIR P Q +++Q V+ MH AAP Y+ P Sbjct: 122 VRFLTGDRLFRLEYGEAHVAIRAGEAPNQPDNVVQ-PFVSQTMHLVAAPSYIAEYGLPDG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H I G + FN WL + + RI + + ++ + G+GI Sbjct: 181 ESDLVNHWFI--GHDSAESRAPFNRWLT---EKVPQNRI-VFRTTDHRAMFDAVLEGAGI 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + +K +P LV ++ S ++ L T K++AF F+ +A W+ Sbjct: 235 GFVATWELKRHPELVEVIPSEEEWSGPLWLVTHVDLHRTTKVQAFLTFLKKEAEGWEL 292 >gi|83645987|ref|YP_434422.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83634030|gb|ABC29997.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 302 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 13/249 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW++ R F V A GS + AA L +SQ ++SRQ+S LE E+ + LF R ++GL LT Sbjct: 13 VNFDWNQARAFLVTAEEGSLSAAARALGISQPTLSRQVSALEKELSVALFERGSKGLELT 72 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G L + + + G + I+ T +L + + LYP Sbjct: 73 PNGLALLGYVRAMGEAAGGLSMAASGHARSVEGTIVISATEVTAAFILPSIIMKLRALYP 132 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I +I N D+ AD AIR +P Q LI RKL I YAAP YL P Sbjct: 133 GLHIDIIASNIASDLKRREADIAIRAFRPTQ-PDLIARKLSDIKAALYAAPSYLDRIGRP 191 Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + +E + + F D K +++ + L+ + P+ + + +L+ + Sbjct: 192 KTPKEFSNAHFLGFSTNNDAYIKALKEHGFELSDKNFPV--------KTDGHLAHWEMTK 243 Query: 237 LGSGIALLP 245 G GI ++P Sbjct: 244 QGVGIGVMP 252 >gi|326388478|ref|ZP_08210073.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207026|gb|EGD57848.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 297 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/275 (28%), Positives = 123/275 (44%), Gaps = 6/275 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F VVA SFT AA +L LSQS++S + LE +GI+L R R ++ TE G Sbjct: 5 DLADLSAFLVVAEERSFTRAAARLGLSQSALSHAMRRLEEHLGIRLLTRTTRSVSPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 KL + + ++ KPSG +R+ + ++LL L+ L YPDI Sbjct: 65 EKLLATLAPAVDSIAEGITQIGRLRDKPSGTIRVTVSDHAARSLLWPALERLLPDYPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN IDI D IRL + + + R + M AP Y + P + Sbjct: 125 VEISIDNGFIDIVEGRFDAGIRLGEAVARDMIAVRIGPPMRMACVGAPAYFERHPVPQTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L H I + + W D I R+ L + +Q G G+A Sbjct: 185 QDLAHHTCINL--RMASSGALYAWEFEKDGRIMNVRVEGQLTFSGSSMAVQAAEAGFGLA 242 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 + + +V+++ LVR+++D P + YP Sbjct: 243 MTIEDVVRESITQGRLVRVLDDWCPPFPGYHLYYP 277 >gi|310814617|ref|YP_003962581.1| transcriptional regulator, LysR family, putative [Ketogulonicigenium vulgare Y25] gi|308753352|gb|ADO41281.1| transcriptional regulator, LysR family, putative [Ketogulonicigenium vulgare Y25] Length = 292 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 132/303 (43%), Gaps = 24/303 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD++R Y VAR G+ + AAE L + +++ R I LE +G KLF RHARG T TE G Sbjct: 3 DWDEIRTAYQVARFGTVSGAAEALGVHHATVIRHIDALEGRLGAKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + +Q + +G+L I T++ LL L F +PDI Sbjct: 63 QDLLRVAQVADDQFNQMITRIQSHKEELAGELVI-TSLQGMTELLLPVLMAFQAEHPDII 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ + + + A AIR + + + L M AA Y+ P S Sbjct: 122 LRHLSGERLFRLEYGEAHIAIRAGSIPEDPDHVIQPLAQHPMALVAAESYIARYGLPASE 181 Query: 184 QELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237 + H + ED+ WLATV PR + L M V+ Sbjct: 182 ADFAGHRFVGHD------AEDYRAPYSRWLATV-----VPRKQVVYRTLDLQEMYAAVIA 230 Query: 238 GSGIALLPDYIVKDNPNL---VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G+GI +P +++ NP L V + +D I+P + V L + K++ F + A Sbjct: 231 GAGIGFVPRWLLGVNPELREVVPLRDDWISPLWVVTHV---DLHRSAKVQGFLRMLKGAA 287 Query: 295 RDW 297 RDW Sbjct: 288 RDW 290 >gi|146313314|ref|YP_001178388.1| putative DNA-binding transcriptional regulator [Enterobacter sp. 638] gi|145320190|gb|ABP62337.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 308 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G E L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGMTAEMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L ++ M A+ +YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCASKNYLLQFGVPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H+ + + + P + L+T P G N ++I ++ V G+GIA Sbjct: 185 SNHSWLEY-SVRPDSEFELIAPEGLSTKLLPQGR-----FVTNDPMTISRWLVAGAGIAY 238 Query: 244 LP 245 +P Sbjct: 239 VP 240 >gi|152984456|ref|YP_001348586.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959614|gb|ABR81639.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7] Length = 309 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 131/289 (45%), Gaps = 12/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F + A SGSFT AA Q ++ +++SR ++ LE +G++LF R R + L++ G H Sbjct: 13 LELFCLAAESGSFTAAANQAGVTPAAVSRSVARLEERLGVRLFVRSTRQMRLSDAGRDYH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L S + SG LRI+ + L L F YP +++ + Sbjct: 73 QQCRQALAQLLEAGHRASGSQLSASGLLRISVPTPYAHHRLLPALPRFRERYPSVEVDVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ID + + D AIR +P S+L+ R+L + AAP YL+ P + +L Sbjct: 133 VSTRNIDFTEEGYDLAIRGSEPA-DSTLVARRLEEAELVLVAAPDYLRRRGRPRHLDDLA 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIG---EPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H I F P W VD RP+ SC + YL+ + G+GI Sbjct: 192 EHECIQFER--PSSGRRVPWNLLVDGRPLAIATRGGYSCQE--DYLAGTTLALAGAGIFQ 247 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V+ DN L ++ + YP A +++AF F Sbjct: 248 AYRFSVQRALDNGELEEVLPSHGGAHRPFFLLYPHARYLPQRVRAFVEF 296 >gi|94313188|ref|YP_586397.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357040|gb|ABF11128.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 350 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 8/295 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS +++ + V G + AA + LS+S +S++IS LE E+G L R +R + + Sbjct: 28 MSLRTEEIEAYLRVVELGGISAAARHMGLSKSVVSKRISDLERELGASLLQRSSRRMQPS 87 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + +L + E++ + G+LRI + G L + EF P Sbjct: 88 ESGRYFYEQARAAMSQLTQAAQSVSEAAQEVCGELRILAPMSFGTRWLSPLIAEFGRANP 147 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ L LD++ +D++ D AIR+ + ++ S LI RKL +P Y P Sbjct: 148 RLRLSLELDDRLVDLAYGGYDVAIRITR-LRDSDLIARKLAPSRRVVCCSPDYAARAGLP 206 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++++ H +++ + +P + F A + P N+ + + G G Sbjct: 207 RTVEDIGHHACLSYSNSLPGQIWTFQPDAHEEAPKTITPRGIYTANNGEVLRDAVLAGHG 266 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 +A+LP +IV ++ R++E + P T ++ YP + KL+A F+ Sbjct: 267 LAVLPRFIVWEDLRAGRLIE--VQPGATPVEDGIFAVYPRNAFGSAKLRALVQFL 319 >gi|260466743|ref|ZP_05812929.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259029473|gb|EEW30763.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 293 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VAR+G AA++L L+ +++SR+I+ LE + KLF R G LT Sbjct: 1 MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEEALRTKLFRRLTTGSELTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + + + SG +RI G L L E L+ ++ Sbjct: 61 GERFLDIAERMEGDMIAARSTISGEGDDVSGTVRIGAPDGFGVAFLAKRLGELTALHREL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI + +P + L+ KLV + +A+ Y + P + Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYTLGLFASRAYAQAHGLPRT 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL +H LI + DLI D+ + D + ++S L + G+GI Sbjct: 180 AAELGQHTLIGYVPDLIVSPSLDYAAEFSPDWR------TSFAISSALGQAEAVRSGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290 +L ++ + P L+ + DV+ P Y+ Y E+++ +++ ++I Sbjct: 234 GILHTFVARSMPELMAV--DVVAPIRRAYWLVYHESVRPLRRVQIVASYI 281 >gi|209516442|ref|ZP_03265298.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209503204|gb|EEA03204.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 331 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 133/298 (44%), Gaps = 24/298 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ ++ + E + +P+G LR+ + +GQ+ + + + LYPD+ I+L Sbjct: 66 LKRSQQILADVDIAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRALYPDVTIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ AD A+ + +S LI L T A+P Y++ P +L Sbjct: 126 TLSQRMPDLFEGSADVAVIGASMLPNSDLISFPLGTTFSILCASPAYVRAHGAPKKPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H + L W T+D P G + + VN S++ G GI + Sbjct: 186 AHHECLI---LHTPAFPPHEW--TLDGPNGSELMEVDGPVHVNIAESLIVAIREGMGIGM 240 Query: 244 LPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +P Y ++D LVR++ D TVY YP R FI K R W Sbjct: 241 VPLYAAISGLRDG-TLVRVLPDYTLQRTTVYALYPS-----------RKFIDAKTRTW 286 >gi|16263952|ref|NP_436744.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|12007637|gb|AAG42545.1| GstR-type transcriptional regulator [Sinorhizobium meliloti] gi|15140076|emb|CAC48604.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] Length = 310 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 143/299 (47%), Gaps = 16/299 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF GS AA +L S +++SR +S LE VG++L +R R L L+E G + Sbjct: 5 DAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSEAGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V LE + P G L I++ LG+ +L+ L +FL LYP + ++ Sbjct: 65 YAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPTVSVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184 L+L ++ +++ + D A+R+ + + SSLI +L + A+P YL N Sbjct: 125 LLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRIEEPA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239 +LDKH ++ F + +E +++ ++V R I PR C+ VNS + G Sbjct: 184 DLDKHQILAFTNF---GLESWSFTPAKGSSVPRTIQFTPR--CI-VNSVRAAAASAAAGR 237 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+ L Y V + + L ++ D P + P+ + K++AF +F + R Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDFAAPRLR 296 >gi|107023592|ref|YP_621919.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690676|ref|YP_836299.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105893781|gb|ABF76946.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116648765|gb|ABK09406.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 324 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ +L F YPDI ++L Sbjct: 67 EHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNEIADLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI----- 241 +H+ + F W+ +D E R++ + VN + + + G G+ Sbjct: 186 EHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243 Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP + + +LV ++ D + YP + K++ F ++I Sbjct: 244 FMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWI 290 >gi|56710300|dbj|BAD81016.1| putative transcriptional regulator LysR-type [uncultured bacterium] Length = 303 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 29/299 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F VVAR+ SF A +L +S++ +S++++ LE V KLF+R R ++LT QG Sbjct: 8 EDLRLFCVVARNRSFAETARELGISKAVVSKRMALLEAAVQEKLFHRTTRNVSLTAQGEI 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +H+ + ++ + PSG LRI ++ G++ L L E +P ++IQ Sbjct: 68 VHQWAQRIREDIDLMGEAISREKAAPSGLLRICSSTGFGRSRLAPALSELARQFPQLEIQ 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + IRL + ++I+R++ AAP YL P ++ + Sbjct: 128 VELFDRPVDLVEEGFQLDIRLGH-VHEGNVIKRRIARNRRVLCAAPAYLAQYGTPQTLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238 L H I I + +DF W + P G ++ ++V+ LS + Q+ + G Sbjct: 187 LQNHRCIP----IRERDQDFGRW--ELHGPAG---VAAIKVSGPLSANNGEIVRQWAIDG 237 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-------CYPEALKNTGKLKAFRNFI 290 GI L + V + I ++ P YF YP L + K+K F+ Sbjct: 238 HGIILRSTWDVSRD-----IAAGLLAPVLPQYFQPADVWAVYPSRLSVSAKVKVCVEFL 291 >gi|107028293|ref|YP_625388.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105897457|gb|ABF80415.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] Length = 340 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 13/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F+ AA+ + ++ +SR I+ LE + I+LF R R ++LTE+G + + Sbjct: 48 VFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQ 107 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + GKLRI + + +L L F+ +P+++I+LI Sbjct: 108 VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRAILGPRLDAFMDAHPELEIELIAR 167 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188 + D+ MD D A+R +P ++SSLI RKL+ + AAP Y+ P ++L+ Sbjct: 168 DSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLEDR 226 Query: 189 -HNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H + F + P+ + F W R + + R L VN +++ C+ GSGIA Sbjct: 227 HHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 283 Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + ++ D L+ + + + +Y YP K +AF +FI Sbjct: 284 LLGAEPLIADG-RLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFI 331 >gi|118588441|ref|ZP_01545850.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Stappia aggregata IAM 12614] gi|118439147|gb|EAV45779.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Stappia aggregata IAM 12614] Length = 293 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 17/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V S F+ AA ++ S++ +S+ + LE E+G++L R R ++LTE G + Sbjct: 1 MRCFIQVVDSNGFSAAAREMGRSKALVSKYVGELEDELGVRLLNRTTRQVSLTEVGEAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + SE+ +++ Q +Q S + G+LR++ +G +LL + +FL+ YP+I + L Sbjct: 61 KEASEILQRIDDLQASVQSSHQEVRGRLRVSAPRSMGDDLLNQAMMQFLVRYPEINLDLR 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D A+R+ + ++ SSLI RK+ A P ++ P +L Sbjct: 121 LEDRFVDLVEEGFDLAVRVAQ-LEDSSLIARKIAPFRTVVCATPKTVETYGAPKVPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 I + K NW + GE R S L+VNS + + G Sbjct: 180 TRPCIIDTNYRYKQ----NWAFHTN---GE-RTSVTVKGPLEVNSAAAARDAALCNLGFL 231 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + V + LV ++E P +Y YP + K++AF +F+ Sbjct: 232 RTPLFFVSKEIRDGRLVLLLESHEEPMRGIYAVYPHRRHLSAKVRAFVDFL 282 >gi|153947540|ref|YP_001399540.1| LysR family substrate binding transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|152959035|gb|ABS46496.1| substrate-binding transcriptional regulator, LysR family [Yersinia pseudotuberculosis IP 31758] Length = 318 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSFT AA+ L L ++ +S+++S LE +G++L R R L LTE G Sbjct: 7 MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + L+ SV+P GKLR+ + + + ++ +L EF YP+I ++L Sbjct: 67 AKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + DCAIR ++ SS I R + +H+ YAAP YL+ QEL Sbjct: 127 GSDRISHLLDNGIDCAIR-GGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELS 185 Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I++ G P F W L + P L + + C+ GSGI Sbjct: 186 VHRRISWFTGQRNP-----FIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V+ LV ++ + ++ YP + +++ F ++ Sbjct: 241 APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288 >gi|239813686|ref|YP_002942596.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239800263|gb|ACS17330.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 315 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 136/288 (47%), Gaps = 16/288 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V +G+FT AA+ L L + +IS+Q+ LE + +L R R +T+T G+ + Sbjct: 7 MRLFVRVVEAGTFTRAADSLGLPKGTISKQVQALEKRLRSRLLNRTTRRVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L+ + + + P G+LR+ L + L+ +L EF YPDIQ+ L Sbjct: 67 DRTVRLLADLDDIESNMSNAQTNPRGRLRVDVGTSLARLLIIPHLAEFQARYPDIQMDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ T AA Y+ P E+ Sbjct: 127 VCDRMVDLIGDSVDCVIRGGE-LHDQSLVARRVGTQEFVTVAAADYVARKGSPCHPSEIG 185 Query: 188 KHN--LITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 K + L+ F G P + +V P R+ + N+Y+S ++ G GI Sbjct: 186 KKHMCLVYFSPHSGKHFPLEFQKDGESISVAGPY---RLGLDERNAYISSVR---AGLGI 239 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + + N +V+++ D P+ VY YP + K++ F Sbjct: 240 GQISSFQAQRYLHNGAMVQLLPDWTQPTQPVYVVYPPNRHLSAKVRVF 287 >gi|170734020|ref|YP_001765967.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169817262|gb|ACA91845.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 324 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ +L F YPDI ++L Sbjct: 67 EHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNEIADLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI----- 241 +H+ + F W+ +D E R++ + VN + + + G G+ Sbjct: 186 EHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243 Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP + + +LV ++ D + YP + K++ F ++I Sbjct: 244 FMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWI 290 >gi|84684446|ref|ZP_01012347.1| transcriptional regulator, LysR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667425|gb|EAQ13894.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2654] Length = 298 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 12/293 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +SFDW++ R F V A GS + AA L L+Q ++ RQ+ L+ E+G+ LF R RG+ LT Sbjct: 10 VSFDWNRARAFLVTAEEGSLSAAARALGLAQPTLGRQVEALQEELGVTLFERAGRGMQLT 69 Query: 61 EQGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G + R E +L ++ G + I+ + LL +++ Sbjct: 70 PAGHAMIEHARAMGEAAGRLSNVAFGQNDTM---EGPVTISASDAYAGLLLPPIIEKMTE 126 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 P I + +++ N D+ AD AIR +P + LI RK+ +A+P Y + Sbjct: 127 AEPRITVNVVVSNTASDLLRREADIAIRNFRP-EEPDLIARKIRDAEARMFASPDYAASL 185 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 S + K + + + + L + PI E + + ++L + Sbjct: 186 GPIQSKDDFAKARFVG----LDRTGQFLGMLQQMGYPISEANVP-VHTENFLVMWALVKR 240 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI ++ I +P +VR+ ED T F ++ L +L+ +F+ Sbjct: 241 GMGIGMIDSVIGDADPGVVRLWEDEPTLGFPIWLVAHRDLHQNRRLRFVWDFL 293 >gi|319763237|ref|YP_004127174.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|330825431|ref|YP_004388734.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117798|gb|ADV00287.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] gi|329310803|gb|AEB85218.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 304 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 24/298 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +AR+G+ AA + + ++++R+I LE ++G LF R A G LTE Sbjct: 1 MDWDNLRYFLELARTGTLAAAARRTGVEHTTVARRIQALEKQMGAPLFAREAAGHRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQE------SSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 G L +E + ++ S+ PSG +R+ T G +L +L Sbjct: 61 GRHL----LPAVEAMEAAVLGVERASPANASAAGPSGLVRVGATEGFGTLILAPHLARLT 116 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 +P + I L+ + + +S AD I L +P + S ++ R L + Y YL Sbjct: 117 QRHPHLSIDLLALPRMLHLSRREADIVISLERPKRGSVIVTR-LADYTLRLYGQREYL-- 173 Query: 177 CREPL--SIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 R PL + ++L H I++ D L K ++ + L +R L+ S + Sbjct: 174 ARRPLVATREDLRHHAFISYVDDLLFTKELQFLDQLYPPER-------FALRSTSITAQY 226 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+G+A+LP ++ +P L R++ + T + P K+ +++A F+ Sbjct: 227 EAVRAGAGLAVLPAFLADRDPILARVLPHEAAFTRTFWMSMPAEAKHLARMQAVWAFL 284 >gi|50121846|ref|YP_051013.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49612372|emb|CAG75822.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 297 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 7/270 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G +L Sbjct: 9 LTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEERLGLRLLARTTRSVAPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H L+T L E +PSG LRI T + +L +K L PDI I++ Sbjct: 69 AKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIHIEVS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ +D+ + D IRL I + R I M A+P YL P + EL Sbjct: 129 VDHALVDVVANQFDAGIRLGGEIDKDMIAMRIGPDIPMAIVASPAYLAMRPAPTTPAELI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H++I F +P W L + R I L VN+ ++ + G G+A + Sbjct: 189 DHSIINF--RLPTSGTLIGWRLMSGGREITVRGQGQLVVNTVDLLVDAVLDGHGLACIHL 246 Query: 246 DYIVK--DNPNLVRIMEDVITPSFTVYFCY 273 D I + DN +L++++ TP Y Y Sbjct: 247 DQIQRFVDNGSLIQVLSQ-FTPDMPGYHLY 275 >gi|332534665|ref|ZP_08410496.1| transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis ANT/505] gi|332035877|gb|EGI72359.1| transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis ANT/505] Length = 297 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 133/265 (50%), Gaps = 12/265 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S+ D LR F + + GSF A+ L +S S++SR+I LE + + L R A +TLT Sbjct: 4 SYSLDDLRYFCTIVKLGSFKKASINLGMSLSTLSRRIRLLEQALQLTLLNRDAHRVTLTH 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + +++ ++E + L + +P GK+RI+ I +G++ L EFLL YPD Sbjct: 64 TGELYYDRYRKLFDEVECIEQALCDEKDQPKGKIRISAPIYMGKHFLSAIFCEFLLQYPD 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQ+ L N IDI + D A R+R P + +I R+L H A +Y P+ Sbjct: 124 IQLDLRFSNNLIDIEKEGIDIAFRVRNPAIDNWVI-RELKLTHNLLCAHQNY---AHHPI 179 Query: 182 S-IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + ++L++H IT L+P +++ T + P L+V+ + Q G Sbjct: 180 THPEQLEEHPKITCVGLVPWQLKN---QQTNEEYCFNPNTHVRLEVDEIQMMKQAVESGV 236 Query: 240 GIALLPDYI---VKDNPNLVRIMED 261 GI+ +PDYI + + L RI+ D Sbjct: 237 GISYIPDYIALPLIEATKLKRILPD 261 >gi|260778699|ref|ZP_05887591.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260604863|gb|EEX31158.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 293 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 35/300 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ + V +GS + A+ +L ++ S++ R+I G+E ++G+ LF R G +T + Sbjct: 6 LDWNDIPFVLAVCETGSLSAASRKLGVNHSTVFRRIEGVELKLGVTLFERLQTGYVMTAE 65 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G K + E+ ++ EL + + G+L I TT L L+ + F YPD+ Sbjct: 66 GEKFFQHAQELKEGVDRIHRELGGQNSRLEGQLTITTTDSLMYTLVD-IFRGFQYAYPDV 124 Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ ++ K++D+ AD A+R R P + + RKL I YA+ +Y++ Sbjct: 125 ELCILTGAKNLDLVQREADIALRPTRNPPE--HWVGRKLSEISYATYASHNYIE------ 176 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-----------RPIGEPRISCLQVNSYLS 230 T D P E+F WL +D + NS + Sbjct: 177 -----------TMADDKP---ENFRWLRLIDNLNQSSMNKIVHQLKHADAPVTISNSLMG 222 Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ V G GIA LP Y+ + NPNL I ++ ++ ++ + K+ AF ++ Sbjct: 223 VHEFAVAGFGIAALPRYLCESNPNLHSIHRNLSQYDTELWLLAHPDMRRSAKVHAFFEYV 282 >gi|221066883|ref|ZP_03542988.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220711906|gb|EED67274.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 313 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 146/307 (47%), Gaps = 24/307 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D + +++ VA SFT AA L +QS ISR I+ LE ++G +L +R+ R ++LT Sbjct: 17 TMDLNAVQMLIKVAECKSFTQAAHILGTTQSRISRAIAQLEADLGTRLLHRNTRNVSLTP 76 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L ++ + LE + L + +P+G LR+ LG+ +L L + YP Sbjct: 77 DGFTLVDHSAALIAGLEEARQLLLDRRCEPTGVLRMTAPSVLGRVVLTPLLGPMMDRYPG 136 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QI ++ +D+ + D A+R+ P+ S +I R+L + AP YL+ P Sbjct: 137 LQIDASFTDRVVDMVDEGFDAAVRI-GPLADSRMIARRLPPLRWVTVVAPSYLQAHGAPH 195 Query: 182 SIQELDKHNLIT-----FGDLIP-----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231 ++QEL +H ++ G +P + E +W+ + +S + Sbjct: 196 TLQELARHRCLSVYNHYLGFKVPWQFKAEGQEPLDWMPP----------QSISFDSGDPL 245 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 ++ + G G+A + ++ V++ + L+ ++ ++ S + YP + K+KA Sbjct: 246 VEGSLAGLGVAQVMEFAVREHIASARLIPVLTELEGRSRELSLVYPRTRHASPKVKALTQ 305 Query: 289 FIFLKAR 295 + +AR Sbjct: 306 MLLEQAR 312 >gi|187920397|ref|YP_001889428.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718835|gb|ACD20058.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 300 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 3/240 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR GSFT AA +L +SQS++S + LE +G+KL R R + TE G +L Sbjct: 9 LLAFVAVAREGSFTRAAARLGMSQSALSHAMRALEERMGVKLLNRTTRSVAATEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + + ++E + ES +P G +RI T ++ L + L YPDI+++L+ Sbjct: 69 RSIAPRFEEIENELVAAVESRDRPVGTIRITATDYAIDTVIWPRLSKMLPAYPDIKVELV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D DI D D +R + + R + +P YL+ P ++L Sbjct: 129 VDYGLADIVADRFDIGVRWGDQVAKDMIAVRIGPDARLAIVGSPEYLEKHPAPKHPKDLV 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN I +P + W L R I N ++ + G G+A +P+ Sbjct: 189 NHNCIRL--RLPTLGGIYAWELTKGSRKIQVRVDGQFTFNGAYQMLNAAIDGVGLAFIPE 246 >gi|166712547|ref|ZP_02243754.1| transcriptional regulator, LysR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 338 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 8 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 68 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 240 DGVGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293 >gi|157371370|ref|YP_001479359.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323134|gb|ABV42231.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 309 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 21/262 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F + A+S SFT AAEQL +++S++ + ++ LE +G +LF+R R L+LT G Sbjct: 16 FVITAKSSSFTAAAEQLGITKSAVGKSVARLEERLGTRLFHRSTRKLSLTSDGEAYLTSC 75 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 L++ + L P+G +RI G+NL+ L E + YP +++ L ++ Sbjct: 76 LSALEILDSAENTLSRRQENPTGTVRIDMPASFGRNLMMPVLIEMMTRYPALRLALTFND 135 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + ID + D +RL + + LI R+L + A+P YL+ P I++L H Sbjct: 136 RLIDPVEEGVDLVLRLGELQSTDELIARRLSRQRLILCASPAYLERHGLPADIEDLKSH- 194 Query: 191 LITFGDLIPKCMEDFNWLATVD---RPIGEPRISCL-----QVNSYLSIMQYCVLGSGIA 242 C+ + A + R GE + + Q++ +++Q C+ G GIA Sbjct: 195 ---------YCVMGYRRGAPLAWRLRKAGEREVKFISATAHQISDGDAMIQACLAGVGIA 245 Query: 243 LLPDYIVKDN---PNLVRIMED 261 P+ +V + +L+ +M D Sbjct: 246 QFPESMVNSHIAAGSLISLMAD 267 >gi|330980799|gb|EGH78902.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT ++L +S S I + I LE +G++LF+R R + LT +GS Sbjct: 9 VFVLVAETRSFTQTGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LE ++EL + P G+LRI ++ L L+ + +F+ YPDI++ + Sbjct: 69 CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ +++ + + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHAIPRHPGDLSQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P +W + R G + Q N+ ++ G GIA LPD Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ N L+ +++D + T +P + + +L+ F +F+ Sbjct: 242 FMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288 >gi|190894475|ref|YP_001984768.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT 652] gi|218515744|ref|ZP_03512584.1| putative transcriptional regulator protein, LysR family [Rhizobium etli 8C-3] gi|190700136|gb|ACE94218.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 301 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 6/245 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V + G F+ AA L ++ S++S+ I+ LE +G +L R R LTLTE+G Sbjct: 6 EMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ +L +V+ G+LRI TTI G + + +F+ PD+ + L Sbjct: 66 HHAALKILQELNDADQAAAGGAVR--GRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDL 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D AIR+ + S LI RKL A+ YL C P+ +L Sbjct: 124 SFTDGIVDLVAEKTDVAIRMGD-LPDSGLIARKLGQSRRVVCASADYLVRCGSPVKPADL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + H+ +TF + F + + +P + VN+ ++ Q + G+GIA + Sbjct: 183 EHHDCLTFNFRRARPSWPFRCGG---QDVAQPVKGSIVVNNGETMKQMALAGAGIARVGL 239 Query: 247 YIVKD 251 + V D Sbjct: 240 FHVAD 244 >gi|183597888|ref|ZP_02959381.1| hypothetical protein PROSTU_01223 [Providencia stuartii ATCC 25827] gi|188022649|gb|EDU60689.1| hypothetical protein PROSTU_01223 [Providencia stuartii ATCC 25827] Length = 297 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 23/305 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++ F V SGSFT AA+ L +S+S +S I LE + + L R+ R + LT Sbjct: 1 MQKNLKQITTFLQVVDSGSFTKAADILGMSRSMVSIDIKQLEIRLNVSLLIRNTRNIALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + ++E Q + +G LR ++T + GQ + L EF LYP Sbjct: 61 EAGKHFYDDFKRIQLEIEEAFERSQNLATNVTGLLRFSSTNEFGQRYILPLLPEFCRLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q ++ D+ + D AIRL ++SSSL RK+ ++ A P LK+ P Sbjct: 121 KLRLQYSFNSSLDDLVTEKLDLAIRLGN-LKSSSLKIRKIGEYQIYIVATPELLKHY--P 177 Query: 181 L-SIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGE----PRI-SCLQVNSYLSI 231 + I +L + IT L NW T + +GE P I S + NS I Sbjct: 178 VKGINDLAQIPWITHSLL--------NWQDTQYILKNTLGEKYPLPIIKSQYESNSVAVI 229 Query: 232 MQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 Q + G+A+ PD++V D+ N L+R++ + PS + YP + K + F + Sbjct: 230 HQMVLASLGVAICPDWLVNDDINAGRLIRLLPEFYLPSQNIQLLYPNSTTLPAKTRVFID 289 Query: 289 FIFLK 293 ++ K Sbjct: 290 YLVEK 294 >gi|170701312|ref|ZP_02892276.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133762|gb|EDT02126.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 300 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 134/302 (44%), Gaps = 11/302 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D++ +R+F V GSFT A+ QL + S +SR++ LE ++G++L YR R +++TE Sbjct: 1 MDFESIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + L + + P G LR+ +G L+ L EF YP + Sbjct: 61 GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI DN +D+ D A+R + S + R L H A+P YL+ P + Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRAGM-LTDSGYVARSLGWSHAKLAASPAYLERVGRPQT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL +H+++ G P A D PI IS N +++++ G G Sbjct: 180 PHELAQHDILYVGRDAPGLTLRLTNAAGDVADVPIRPVLIS----NESITVLRQAASGGG 235 Query: 241 IALLPD-YIVK--DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IAL+ YI + + L ++ D T ++ YP K++ F F+ Sbjct: 236 IALISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTG 295 Query: 297 WK 298 W+ Sbjct: 296 WR 297 >gi|307131378|ref|YP_003883394.1| hypothetical protein Dda3937_03126 [Dickeya dadantii 3937] gi|306528907|gb|ADM98837.1| Hypothetical transcriptional regulator ycjZ [Dickeya dadantii 3937] Length = 297 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 130/270 (48%), Gaps = 8/270 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G +L Sbjct: 9 LTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEERLGLRLLSRTTRSVAPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H L+T L E +PSG LRI T + +L +K L PDI+I++ Sbjct: 69 AKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIRIEVN 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ +D+ + D IRL I + R I M A+P YL P + EL Sbjct: 129 VDHALVDVVANQFDAGIRLGGDIDKDMIAVRIGPDIPMVVVASPAYLARRPAPTTPAELF 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H+LI F +P W L + R I L VN+ ++ + G G+A + Sbjct: 189 DHSLINF--RLPTSGTLIGWPLMSDGREIRVRGQGQLVVNTIDLLVDAVLDGHGLACIHL 246 Query: 246 DYIVK--DNPNLVRIMEDVI--TPSFTVYF 271 D + + DN NL++++ + P + +Y+ Sbjct: 247 DQVQRFIDNGNLIQVLSGLTRDIPGYHLYY 276 >gi|169634494|ref|YP_001708230.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF] gi|169153286|emb|CAP02392.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii] Length = 298 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 14/292 (4%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ FY+ VA+ SF+ A QL L +S+++ I LET G++LF+R R ++LT+ Sbjct: 2 DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + E + +Q G L+I+ + ++ L +F YPDI Sbjct: 62 GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + D+ DC +R+ + + +SSLI R + + M A+ YL++ P Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASTQYLQDYGIPEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + +L++H LI + + + +F + G + S L VN+ + + G GI Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQG------GTVMMDSALSVNNTEAYIAAACAGLGI 234 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y V+D LV ++ I PS + YP +L+ F N++ Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYIAPSLPLNILYPNRSYIPKRLEVFMNWV 286 >gi|293608761|ref|ZP_06691064.1| transcriptional regulator [Acinetobacter sp. SH024] gi|292829334|gb|EFF87696.1| transcriptional regulator [Acinetobacter sp. SH024] Length = 306 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 10/285 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ + GS A +L+L+ ++SR+++ LE +G++L R R ++LT +G Sbjct: 6 ELAFFCLLVKQGSLVATARELNLTPPAVSRRLNQLEERLGVRLLNRTTRRISLTSEGEVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + + S P G LR+ + G++ + + F +YPD+ +QL Sbjct: 66 FENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYPDVDVQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ + D +IR + I S LI +KL A+P YLK +PL+ +L Sbjct: 126 HLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKTAGQPLTPHDL 184 Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 +H I +I + + NW + + + ++ L N + + + G GI + Sbjct: 185 TQHQCI----VIRQNDSAYGNWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGYGILMR 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ V + LV+++ D TP VY Y E L + K+ F Sbjct: 241 AEWDVAKYLRSGRLVQVLADYETPPADVYAVYLERLNLSPKVAHF 285 >gi|66046176|ref|YP_236017.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63256883|gb|AAY37979.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|330969979|gb|EGH70045.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 300 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 5/251 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V ARS SFT AA +L +S+S++ + I+ LE +G++LF+R R ++LT G Sbjct: 13 FVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRISLTADGDAYFIAC 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S ++ + L + +PSG+LRI + G+ ++ L E YP +Q+ + + Sbjct: 73 SNALEEIGAAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANKYPALQLNMTFSD 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +D + D +R + +S L+ R+L AAP YL P ++++L++H+ Sbjct: 133 HLVDPIEEGIDLLVRFGELKDTSGLVARRLARQRWAICAAPSYLARFGVPDTLEDLNRHH 192 Query: 191 LITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I + + +W D+ + S Q+ +++ V G G+ +P + Sbjct: 193 CIVGH----RRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVGLCQMPRCLF 248 Query: 250 KDNPNLVRIME 260 KD+ + R++E Sbjct: 249 KDDIDAGRLVE 259 >gi|33596107|ref|NP_883750.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33601505|ref|NP_889065.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33573110|emb|CAE36754.1| LysR-family transcriptional regulator [Bordetella parapertussis] gi|33575941|emb|CAE33020.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 305 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 125/276 (45%), Gaps = 24/276 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VAR+ SF+ AAE L + +S++SRQ++ LE VG++L R R + LTE G Sbjct: 1 MELFVEVARTLSFSRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ELQ PSG LR+ D G + L EF YP++ L Sbjct: 61 ERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLD 120 Query: 128 LDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 L + + D+S++ D + S+ I R L + H YA+P YL E Sbjct: 121 LASPEHAERVFQTCDVSIEIGD--------LPDSTHIARLLGVLPAHLYASPDYLARHGE 172 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P +L +H I F + W L + +R + + VNS + LG Sbjct: 173 PQHPDDLPRHECIQFRAGTGRVT---RWPLNSGERHVEITPGNRFSVNSVSMVRNLATLG 229 Query: 239 SGIALL-PDYIVKDN---PNLVRIMEDVITPSFTVY 270 +GIA+L P V+++ L RI+ D + F VY Sbjct: 230 AGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVY 265 >gi|254240252|ref|ZP_04933574.1| hypothetical protein PA2G_00895 [Pseudomonas aeruginosa 2192] gi|126193630|gb|EAZ57693.1| hypothetical protein PA2G_00895 [Pseudomonas aeruginosa 2192] Length = 295 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 14/279 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L+ F V SGS + AAEQ+ L+ S++SR +S LE ++G L R R + LT Sbjct: 1 MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ ++E + L P+G+LRI + + ++ EF LYP Sbjct: 61 EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ++L ++ ID+ D AIR+ + S+L R L +H A+P YL P Sbjct: 121 NIQLELNTNDLIIDLLEQRTDVAIRI-GALSDSTLHARPLGASRLHILASPEYLARHGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 SI+ L H L+ F P+ + + + A DR +P IS +S ++ Q + Sbjct: 180 TSIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLVLSHQ 234 Query: 240 GIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYF 271 GIA L ++ ++D P M + P VY+ Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYY 273 >gi|328544495|ref|YP_004304604.1| transcriptional regulator protein, LysR family protein [polymorphum gilvum SL003B-26A1] gi|326414237|gb|ADZ71300.1| Probable transcriptional regulator protein, LysR family protein [Polymorphum gilvum SL003B-26A1] Length = 293 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 10/262 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R+F VARSG A+ +L L+ ++++R+++GLE + L R G LT Sbjct: 1 MNWDDVRMFLAVARSGQILAASRRLGLNHATVARRLTGLERTLKTSLLERSTSGCVLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + EL ++ + SG +RI G L L + +P++ Sbjct: 61 GERFMTHAERMEAEMLSAASELTDTDIDVSGTVRIGAPDGFGVAFLAPRLGDLTARHPNL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL+ + +S AD AI + +P + LI RKLV + YA+ YL P + Sbjct: 121 TVQLVPVPRSFSLSRREADIAITVDRP-EHGRLIARKLVDYALGLYASADYLTRRGTPKT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL H+L+ + +ED + +++ I + ++ S L + G+G Sbjct: 180 AAELRGHDLVGY-------VEDLLYSPSLNYGTEIVRDWSARFEIASALGQTEAVRAGAG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDV 262 I +L +I + + +LV ++ ++ Sbjct: 233 IGILHAFIARMDASLVPVLPEI 254 >gi|295097247|emb|CBK86337.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 295 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 24/301 (7%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V SGSFT AA +L +S + + I+ LE+++G +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVESGSFTGAAARLEMSAVMVGKYIAQLESQLGTRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ P+G LR+ G ++ FL YP++ Sbjct: 62 GRVYFEEARRVLEQVSIAENAVERLRATPAGTLRVTAPTSFGGCVIAPLTATFLQRYPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L L N+ +D+ + D AIR+ + I++ L+ + L +M AAP YL P + Sbjct: 122 RIELDLTNRMVDLVEEGVDLAIRIGE-IRNEDLVAKYLCPYNMVICAAPDYLARHGTPQT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235 +L H C+ W L V+ + R + L+ N + Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAVLRCNDGYGLRMAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 G+G+ L P+ +V + + LVR++E V+ + + L+ KL F I L Sbjct: 231 RAGAGLLLQPEVLVAEELASGRLVRVLEAFTPAPRPVHLLWRQDLRPLPKLTEFIAHILL 290 Query: 293 K 293 + Sbjct: 291 R 291 >gi|317053409|ref|YP_004119176.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316953148|gb|ADU72620.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 295 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 31/307 (10%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L F A + SF AA L +S S++ + ++ LE ++G++LF R R ++LT +G Sbjct: 4 FTSLTSFVRTAEALSFVEAARSLGISASAVGKNVARLENKLGVRLFNRSTRNVSLTAEGV 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + +L + EL + +P+GKLR++ + +G LL L F YPDI++ Sbjct: 64 VLLARCQHILEQLREAEAELTSTVEQPAGKLRVSLPV-IGYRLLLPLLPAFTQRYPDIEL 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L ++ ++I + D AIR I S L + L + A+P YL P S + Sbjct: 123 ELDFSDRLVNIIDEGFDVAIR-SGEIADSRLTAKTLGNFNFVLCASPAYLDAHGAPASPE 181 Query: 185 ELDKHNLITF-----GDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 EL H + F G + P + DFN S L N+ ++++ Sbjct: 182 ELSNHKCVLFRFPATGLIQPWELREMRITGDFN------------PASVLTANNIEAVIR 229 Query: 234 YCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI+ +PD++V++ N L ++ T +P + + +++ F +F+ Sbjct: 230 ISTSGLGISYVPDFVVREAFNQGELKEVLAGSCIKQGTFSALWPTSRYLSPRIRCFIDFM 289 Query: 291 FLKARDW 297 A +W Sbjct: 290 ---AENW 293 >gi|209517842|ref|ZP_03266676.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501675|gb|EEA01697.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 309 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 129/287 (44%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA + SF AA QL ++ S I+ +I LE V LF+R R + L+E G + Sbjct: 7 IEAFVRVAETSSFAEAARQLGVTSSVITTRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R +EV ++ +++E P+G+LRI L EF YP IQ+ +I Sbjct: 67 RECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D + D A ++ PI + SLI+R+L + A P Y+K P ++L Sbjct: 127 VNDRVVDPIEEGFDVAFQIFPPI-AESLIERRLFKVRRLFCATPAYVKEHGAPQHPRDLL 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + W T + E + ++ NS + Y + G G+ LP Sbjct: 186 QHTTALYSGYPSRN----RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPT 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + +LV I+ D + YP + K+KA F+ Sbjct: 242 LVASAALLDGSLVPILTDYTLSTLNFAAVYPATQRQALKVKALVEFL 288 >gi|330953576|gb|EGH53836.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae Cit 7] Length = 302 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 142/290 (48%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGS T A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRMFCQVMESGSLTPASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAELEQVEQGIAGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQRPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ + +G W D+P+ ++ N+ + + + G GI Sbjct: 183 DLHTHDCLPYGH-----SRQAQWRFQGHDKPLTLNVSGRMRANNGELLRESAIAGLGITY 237 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV + +LVR+++++ T+ YP+ + + ++AF F+ Sbjct: 238 LPTFIVGAALRDGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|312113830|ref|YP_004011426.1| LysR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311218959|gb|ADP70327.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii ATCC 17100] Length = 304 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 19/291 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA SFT AA +L SQSS+S I +E +G++L R R + TE G +L Sbjct: 12 FLTVAEERSFTRAAARLGTSQSSLSHMIRRMEERMGVRLLTRTTRSVAPTEAGEQLVATL 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 ++ ++T + KP+G +RI ++ + +L + + + YPDI++++ +D Sbjct: 72 RPAFNDIQTRLDSMSALRQKPAGTIRITSSRHATETILMPAVMQLMADYPDIKVEISVDQ 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + D+ + D +RL + ++ + + + M +P Y +P + +L +H Sbjct: 132 RLTDLVAERYDAGVRLGEQVEKDMIAVKIGPELRMTVVGSPAYFAQHPKPATPHDLTQHV 191 Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I +P + W RP+ N I+ V G G+A LPD Sbjct: 192 CINL--RLPTLGGLYAWEFEKNGRPLNVRVDGQFTCNDVPMIIHAAVNGLGLACLPDDQF 249 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYP-------------EALKNTGKLK 284 KD LVR++ED P + YP EAL+++ +L+ Sbjct: 250 KDLIEEGRLVRVLEDWCPPFPGYHLYYPSRRQPSPAFVLLVEALRSSSRLR 300 >gi|241767027|ref|ZP_04764813.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241362450|gb|EER58386.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 315 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 142/301 (47%), Gaps = 33/301 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF VV R SF AA +L S + +S++I LE E+G+KL +R R + +TE+G + Sbjct: 19 EDLRVFTVVVRKASFGEAATELGASPAYVSKRIRLLEQELGVKLLHRTTRRVAVTEEGER 78 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + ++ E+ + +P G+LR++++ G+ ++ + + + +Q++ Sbjct: 79 VFQWAQRILDDMDQLLQEVAVTRREPRGQLRVSSSFGFGRQIVAPAMSRLVAQHAGLQVR 138 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D++ + D +R+ I + LI R+L H AAP YL P ++ + Sbjct: 139 LEVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPAYLARHGSPRTLAD 197 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------------LQVNSYLSIMQ 233 L H+ + + D P G R+ L N+ ++Q Sbjct: 198 LPGHDCLVIKER--------------DHPFGVWRLRGGAMDETVKVRGPLSANNGEMVVQ 243 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289 + V G GIAL + V + R+++ + P + V+ YP L + K++ F Sbjct: 244 WAVDGRGIALRSLWDVGAHLRAGRLVQ--VLPDWRQEANVWAVYPTRLDRSAKVRVCVEF 301 Query: 290 I 290 + Sbjct: 302 L 302 >gi|262194951|ref|YP_003266160.1| LysR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262078298|gb|ACY14267.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM 14365] Length = 303 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 142/286 (49%), Gaps = 18/286 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + V+ V +GSFT AA+ + +S+ ++S +I+ LE +G++L R R L T+ G++ Sbjct: 6 DDMVVYAAVVEAGSFTRAAKVVGMSKQAVSDRIARLEQHLGVRLLERTTRTLRPTDLGAR 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + + EL PSG LR++ G+ L + + +L YPD++I+ Sbjct: 66 YFEHSRAVAAIMSAGERELGRLKESPSGTLRLSIPSLYGRRFLAPVVSDLMLTYPDLRIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSI 183 IL ++ +D+ + D A+R+ SS+I RKL + ++H A+P +L R EP S+ Sbjct: 126 AILTDRYVDLVAEGFDAAVRV-GIRNDSSVIARKLGSSNVHCVASPGFLTKHRVAEPASL 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L + + E ++ + T + + EP L VN ++ + G G+A Sbjct: 185 TGLPCIGM--------QAKETWS-IGTRSKCVVEP---ALVVNDLEVGLEAAIAGVGVAR 232 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP ++++ + L + + ++ T+Y YP + L AF Sbjct: 233 LPAFLLRPYTASGALSVLFDGLVVARRTLYAVYPSRELRSPALMAF 278 >gi|237730159|ref|ZP_04560640.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908765|gb|EEH94683.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 309 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 11/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+ + +L + P G LRI + + QN+L G L YP + + L Sbjct: 66 YQGCRRMLHEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQFGAPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + E R I E R N ++++++ G+GIA +P Sbjct: 185 SNHSWLEYSVRPDNEFELIAPEGISTRLIPEGRFVT---NDPMTLVRWLAAGAGIAYVPL 241 Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V + N R +++ P + VY Y E K K++ N++ Sbjct: 242 MWVINEIN--RGEVEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 288 >gi|53719799|ref|YP_108785.1| LysR family regulatory protein [Burkholderia pseudomallei K96243] gi|53724113|ref|YP_103228.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|76809711|ref|YP_334007.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121599157|ref|YP_993406.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124385771|ref|YP_001029158.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126452276|ref|YP_001066785.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167720210|ref|ZP_02403446.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167739212|ref|ZP_02411986.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167816424|ref|ZP_02448104.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167846334|ref|ZP_02471842.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167894914|ref|ZP_02482316.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167903301|ref|ZP_02490506.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167911545|ref|ZP_02498636.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167919553|ref|ZP_02506644.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|242317300|ref|ZP_04816316.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254206516|ref|ZP_04912868.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|52210213|emb|CAH36192.1| putative LysR-family regulatory protein [Burkholderia pseudomallei K96243] gi|52427536|gb|AAU48129.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|76579164|gb|ABA48639.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] gi|121227967|gb|ABM50485.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|124293791|gb|ABN03060.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126225918|gb|ABN89458.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|147753959|gb|EDK61024.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|242140539|gb|EES26941.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] Length = 300 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 66 LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPGTLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|254418847|ref|ZP_05032571.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] gi|196185024|gb|EDX80000.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] Length = 308 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F VA + SF+ AA+ + +S++++S+ ++ LE ++ L +R +R +LT+ G Sbjct: 6 DLEAMAIFAKVAEAQSFSGAADVMGMSKATVSKAVTRLEQQLKTTLLHRTSRRFSLTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + + E E + SV P G +R+AT + G + +L EFL +PD+ Sbjct: 66 RTLAARAGLMLAEAEGAVSEALDMSVTPRGLVRLATPMSFGMAYVAPSLPEFLATHPDVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L ++ ID+ DCA+R+ + SSL R+L + A+P YL P Sbjct: 126 IDLHLSDEVIDLVGGGFDCALRIAA-LPDSSLTARRLRPVERRLVASPDYLAQRGRPTHP 184 Query: 184 QELDKHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L++H + + + + + + D +V RP G L+ N+ ++ G Sbjct: 185 HDLERHACLGYAYMSTPDVWRFINDAGEEVSV-RPRGP-----LRANNSDALTASLCAGL 238 Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ PD+I V D +L +M + ++ P ++ A +++ Sbjct: 239 GVFPQPDFIYWKDVADG-HLETVMSEWRLAPIALHLVAPGGGPRPARVTAMMDYL 292 >gi|121592593|ref|YP_984489.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120604673|gb|ABM40413.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 305 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 8/274 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D++ +F VA SFT AAE L + ++S S + LET++G +L +R R + LT+ G Sbjct: 4 FDRMHIFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ ++ Q Q + G++RI + + +N++ L E L +P ++ Sbjct: 64 AYYERCKDLLADVDELQSMFQHPAGAGLKGRVRIDMSTGMARNVVVPRLPELLAPHPGLE 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L + +D+ + DC +R + SSL+ R L + A+P YL+ P S+ Sbjct: 124 LELSSTERRVDVVREGFDCVLRT-GAVVDSSLVARPLGLARLVNCASPAYLRAHGTPRSL 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H L+ F + + F A VD + P L VN+ + M C+ G G+ Sbjct: 183 ADLPGHRLVHFVNTLGARSAGFE--AVVDGALVLTPMQGALTVNNAEAYMAGCLAGLGLI 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P V D +LV ++ + P + Y Sbjct: 241 QVPHLGVVDLLARGDLVEVLPQLAAPPMPLTLMY 274 >gi|110678640|ref|YP_681647.1| LysR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109454756|gb|ABG30961.1| transcriptional regulator, LysR family, putative [Roseobacter denitrificans OCh 114] Length = 292 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 20/300 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD++R + VAR G+ + AAE L + +++ R + LE +G+KLF RHARG T TE G Sbjct: 4 WDEVRTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEARLGVKLFQRHARGYTATEAGQ 63 Query: 65 KLHRV---TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L RV T + +H+L +I+ + + V SG L + + IDL ++ L F YPD Sbjct: 64 DLLRVAQATDDQFHQL-AGRIKGRGNEV--SGDLVVTSLIDLSSRMVP-VLVAFQKAYPD 119 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++ + + + A AIR P Q +++Q + + +A Y+ P Sbjct: 120 VVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQ-EFRHHRVALFATTDYIAEHGRP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVL- 237 ++ H + + N A +R + + P S +S + +L Sbjct: 179 NGVKSFGDHRFV--------AHDADNSRAPFERWLRQNVPASSIKFRSSDTRAQREAILD 230 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 G+GI LP + +++P LV + + S ++ L T K++ F NF+ A+DW Sbjct: 231 GAGIGFLPAFEAQNHPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLNFVKEAAKDW 290 >gi|325522799|gb|EGD01277.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 237 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 118/246 (47%), Gaps = 13/246 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + LR+F +GSFT AA+QL LS+ +SR+ LE +G++L +R+ R L +TE Sbjct: 1 MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + + S + G L+I+ + G L + EFL +P + Sbjct: 61 GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHLSPLIAEFLSAHPAV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ +D+ + D +R+ ++ S+LI R L M A A+P YLK P + Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWRMIACASPAYLKRHGAPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 EL H + +G W VD G R +Q N+ + + G Sbjct: 180 PAELANHTCLLYGR-----ERRVGWEFRVD---GAARTFDVQGPLVANNGEVVRDAAIAG 231 Query: 239 SGIALL 244 GIALL Sbjct: 232 LGIALL 237 >gi|170693160|ref|ZP_02884321.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170142158|gb|EDT10325.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 297 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 134/289 (46%), Gaps = 5/289 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A +GSF A L ++ ++ + + LE ++L R R +LTE G + Sbjct: 7 MAVFVKAAETGSFAAAGAALGMTSQAVGKHVRLLEERYRMQLINRSTRRQSLTEAGRAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V ++E + P GKLRI + G + L L +++ +P++ + L Sbjct: 67 ERSKSVLAEMEAAEALAANLQAAPRGKLRINAPVSFGAHSLVPTLAQYMRQHPEVSVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ + D +R+ PI S LI R + + A+P YL PL ++L Sbjct: 127 LSDRLIDVIDEGYDAVVRI-APIADSRLIARPIGPYRLTICASPAYLAERGTPLRPEDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H F + +++ + R + P S +N+ ++ V G+GI L P Sbjct: 186 QHECPGFSYWGRGPLREWHLVGPDGRHV-VPVSSRFSINNGQALRNAAVEGAGIILQPCA 244 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +++++ LVR++ D P ++ + + T KL++F +F+ + Sbjct: 245 MLREDLAAGRLVRVLPDYEPPPLPIHLLFAPDRRPTPKLRSFIDFVVAR 293 >gi|170699006|ref|ZP_02890064.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170136113|gb|EDT04383.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 323 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ L F YPDI + L Sbjct: 67 EHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPDITLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARYGEPQEIADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + + G G+ Sbjct: 186 DHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP + K++ F +++ Sbjct: 244 FMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWL 290 >gi|115360852|ref|YP_777989.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286180|gb|ABI91655.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 310 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 11/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V G+F A+E + ++ +SR I+ LE ++ I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE S+ GKLR+ + + +L L F+ +P+++I+LI Sbjct: 74 VMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGPQLDAFMDAHPELEIELIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187 + D+ MD D A+R +P ++S+LI RKL+ + A+P Y+ P ++L+ Sbjct: 134 DSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPAYIARWGRPAKPEDLESR 192 Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H I F + P+ + F W R + + R L VN +++ C+ GSGIA Sbjct: 193 SHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LL + N L+ + + F +Y YP K +AF +F+ Sbjct: 250 LLGAEPLIANGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFV 297 >gi|311108694|ref|YP_003981547.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763383|gb|ADP18832.1| bacterial regulatory helix-turn-helix protein, LysR family protein 177 [Achromobacter xylosoxidans A8] Length = 299 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 140/289 (48%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA SF A QL +S S+IS+ ++ LE ++G++LF R R + LT +G+ Sbjct: 7 MTIFVLVAEVRSFAAAGRQLGVSASAISKGVARLEEKLGVRLFQRSTRSVGLTPEGTLFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + EL ++ P G+LR+ ++ L L+ + F YP I++ L Sbjct: 67 ERCRRILAEIAAAENELTSTTASPKGRLRV--SLPLVSGLMLPAISAFAHRYPQIELDLD 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D +R + + S L+ ++L + AP Y PL +EL Sbjct: 125 FSDRLVDVIAEGFDAVVRTGE-LSDSRLLSKRLGSSRFVYVGAPGYFAQRGTPLHPEELT 183 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H + +E + ++ RP E I + + N +++ V G GIA L Sbjct: 184 QHACLMHRFPTTGTLEKWPFV----RPPSETVIRLTASMTSNHVETLLHMAVQGHGIACL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+ V+ ++ L +++ S T + +P + + +++AF +F+ Sbjct: 240 PDFAVQPALESGALQIVLDRWAGSSSTFWVLWPSNRQLSPRVRAFVDFM 288 >gi|300715206|ref|YP_003740009.1| transcriptional activator, LysR-family [Erwinia billingiae Eb661] gi|299061042|emb|CAX58149.1| transcriptional activator, LysR-family [Erwinia billingiae Eb661] Length = 297 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 20/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA++ L +SS+S++IS LE +G++L R R L LT G + Sbjct: 8 MALFALVAECGSFTGAAKKAGLPKSSVSQRISQLEQALGLRLINRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + ++ PSG+LRI + +G LL F YPD+ +++ Sbjct: 68 VHCQEMMQASERANVAIERLRDNPSGRLRITSPAGIGATLLARLNAAFQQEYPDVTLEVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ DI ++ D A+R +P Q SSLI R++ A+ YL+ Q+L Sbjct: 128 VSDEVRDIVLEGYDVALRTGQP-QDSSLIGRRIGYCERLLVASKGYLEQYEAITHPQQLA 186 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG-SGIA 242 +H I L+ + E + WL + + L + C LG +GI Sbjct: 187 EHRCIAHRAWSEWLLNRGEEYYRWL-----------LPPTHMTDNLVYARECALGDAGIT 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP ++ ++ LV+++ D ++ YP N+ + F ++ Sbjct: 236 LLPRFLTQEILPGGGLVQVLPDWQVEGNELWLVYPSRKLNSPAVARFIDY 285 >gi|323528229|ref|YP_004230381.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385231|gb|ADX57321.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 349 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 9/285 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-RV 69 F VA GSF A ++L + +SS+SR + LE ++ ++LF R R +LT +G + R Sbjct: 42 FLAVANEGSFARAGDRLGIGRSSVSRNVQKLEAQLEVRLFLRTTRSTSLTREGELFYERC 101 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V +E + S P G LRIA+T G+ ++ L+ F +P I ++L+L+ Sbjct: 102 QPGVERIVEALDGMRELRSGPPRGHLRIASTSGFGRRIVAPLLRGFHSRFPGITLELLLN 161 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + D + D D + R + ++ S ++ R+L+ + M A+P Y + P I EL +H Sbjct: 162 ERPADFTSDRVDVSFREGR-MEDSGIVARQLIAMQMIVCASPAYARRHGLPRRIDELAQH 220 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDYI 248 I F + E W VD + + N I+Q + G GIA +P Y Sbjct: 221 RCINFRMASGRIKE---WEFKVDDHTQRHQPAAQHTFNDADLILQAVLDGVGIAQVPAYQ 277 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V D LV + Y CY +++ F +++ Sbjct: 278 VCDLLGERRLVSCLGQHAPDDSGHYICYLSRKHLPARIRVFVDYM 322 >gi|154246137|ref|YP_001417095.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160222|gb|ABS67438.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 307 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 11/293 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW L F VAR+G T AA +L + S++SR+I LE +G KLF R G LT Sbjct: 6 FDWSDLTFFLAVARAGRLTAAAARLKVEHSTVSRRIGALEEALGAKLFDRRPHGYGLTAA 65 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + Q E+ + + +G +RI G L + L+P++ Sbjct: 66 GERLMAAAEGMETLALAAQGEIGGADLGVAGTVRIGAPDGFGTFFLAPRISALADLHPEL 125 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD AI L +P + L RKL + YA+ YL+ S Sbjct: 126 DIQLLAMPRLFSLSKREADIAISLSRP-KEGRLHARKLTDYRLGLYASRAYLERHGPIES 184 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H I + D + E +++ V + I R+ L+ +S ++ + G+G+ Sbjct: 185 RAGLQRHPFIGYVDDLIYAPE-LDYVPLVAKDI---RVR-LKSSSLVAQLTATQAGAGVC 239 Query: 243 LLP----DYIVKDNPN-LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP D D PN LV I+ + + T + ++ +++ +FI Sbjct: 240 VLPCFMADLFAGDRPNALVPILPGDVGLTRTFWLLTHTDTRDLARIRVAADFI 292 >gi|146292056|ref|YP_001182480.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563746|gb|ABP74681.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] gi|319425350|gb|ADV53424.1| transcriptional regulator, LysR family [Shewanella putrefaciens 200] Length = 299 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 134/283 (47%), Gaps = 21/283 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +++ D +R+F+VVA+ GSF AAE L + S++SR+I+ LE +G++L +R A + LT Sbjct: 3 LNYSLDDMRLFWVVAQQGSFKLAAEHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ +L EL + GKLRI+ I+ L +L F L YP Sbjct: 63 ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYLWLGESLNAFQLRYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I I L L N +ID+S + D A R+ +P + I R L TI A Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISF-VLCASSTATQWHSL 180 Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ 233 SI+EL++H +I T+ +DF + EPR + L V+ Q Sbjct: 181 QSIEELEQHPVIIAKPAKTWRLQHNITGQDFEF---------EPRGNIKLAVDDMAIASQ 231 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + G GI LLP + + + L++I+ + T Y Y Sbjct: 232 AVMAGLGIGLLPISMASERIQSGKLIQILPEWKGAPRTAYLMY 274 >gi|325927386|ref|ZP_08188634.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|325542207|gb|EGD13701.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 333 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 3 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 63 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 123 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 183 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 234 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 235 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 288 >gi|21242405|ref|NP_641987.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107845|gb|AAM36523.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 333 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 3 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 63 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 123 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 183 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 234 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 235 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 288 >gi|114046121|ref|YP_736671.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113887563|gb|ABI41614.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 300 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 17/296 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAE L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 MRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRCVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V ++ + + + G +RIAT + LGQ+ L + F+ L+P + IQL+ Sbjct: 67 QYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQLL 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185 + + + + D A+R +P +LI RKL++I AAP YL EPL++ + Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARKLMSIDAVLCAAPSYLAQA-EPLTVPND 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +HN LI + + L + +P + L N ++ + G GIA LP Sbjct: 184 LLRHNC-----LIHSSQQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + L ++ + P T++ Y L + + R FI A+ W+ Sbjct: 238 CDLANQYLASGQLQEVLPEYTAPGQTLWAVY---LSRSYQQALVRAFIDFTAQQWQ 290 >gi|115352754|ref|YP_774593.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282742|gb|ABI88259.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 323 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ L F YPDI + L Sbjct: 67 EHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPDITLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPQEIADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + + G G+ Sbjct: 186 DHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP + K++ F +++ Sbjct: 244 FMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWL 290 >gi|257486797|ref|ZP_05640838.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988687|gb|EGH86790.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010267|gb|EGH90323.1| regulatory protein LysR, substrate-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 297 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VAR SFT AA +L ++ S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLLVARDQSFTKAATKLGVTPSALSHSMRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNLRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +PD + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|254294139|ref|YP_003060162.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042670|gb|ACT59465.1| transcriptional regulator, LysR family [Hirschia baltica ATCC 49814] Length = 294 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 143/288 (49%), Gaps = 7/288 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD L++ +V+R T A+++L ++ISR++ LETE+G+ LF R RG LT + Sbjct: 1 MNWDDLKLLLLVSRYPILTEASQKLGQDATTISRRLKKLETEIGLTLFERTRRGHILTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 ++ +E + + ++ + +G +R+ATT LG + + F L+P+I Sbjct: 61 ALEI-AAQAEAMEQSILSIATYAQTEQQIAGHVRLATTEGLGTYFIAPEIANFTQLHPNI 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + LI +IS AD AI L +P Q L RKL + Y+ YL S Sbjct: 120 ALDLIAIPGYANISKREADLAIVLTRP-QKGRLKVRKLTDYQLALYSTQKYLDEFSNIKS 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H LI + D + ++ N+ + P +P + S ++ +Q G+GI+ Sbjct: 179 KSDLSGHTLIGYMDELLYS-DELNYYQEI-FPDLKPSLCS---PSIVAQLQMTRSGAGIS 233 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + +P+LVRI+ + I + + + + + +++A F+ Sbjct: 234 ILPRFMAEKHPDLVRILPNEINITRSFWLTTHQDAHSLARIQAVSEFL 281 >gi|239833393|ref|ZP_04681721.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821456|gb|EEQ93025.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 303 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT A+ L++ +++IS I GLE +G KL R R + +T G+ + Sbjct: 7 MRAFLRVVETGNFTRASASLNMPKATISNLIQGLEAHLGTKLLNRTTRRVLVTPDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L L + P G+LR+ + ++ L EF YPDIQI L Sbjct: 67 ERAARLLADLAELDGSLSSAQTLPKGRLRVEMAGAVANLIIIPALMEFHQRYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCAIR+ + + SLI R++ +H A A+ YL C PL +L Sbjct: 127 VSDRPVDYVAENVDCAIRIGE-LADQSLIARRIGDMHFIACASAEYLDRCSTPLHPSDLS 185 Query: 188 KHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + + + G +P V+ G ++ + +YL+ + G G+ Sbjct: 186 RDCTVVGYFRPSTGQQMPFRFRKGTEEIEVN---GRYVVAANESTTYLAAAR---AGLGV 239 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++VKD+ L ++++ +Y YP + +L+ F +++ Sbjct: 240 VQAPLFMVKDDIASGTLRPVLQEWEIEPTPIYLVYPPNRHLSNRLRVFADWV 291 >gi|317407127|gb|EFV87129.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 294 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 136/281 (48%), Gaps = 9/281 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SF A L +S S++ + ++ +E + ++LF+R R +TLT +G K Sbjct: 9 VFVLVADTRSFAEAGRTLGVSPSAVGKSVARMEAHLKVRLFHRSTRHITLTPEGEKFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++E ++EL E++ PSG+LR+ ++ L + + F+ YP +++ L Sbjct: 69 CRRILCEVEAAELELSEAAGTPSGRLRV--SLPRYSRLFEPAIATFMKQYPQVRLDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R + +Q S L +R+L A+P YL P +L +H Sbjct: 127 DRMVDVIGEGYDAVVRSGE-MQDSGLKRRRLGQFRRILAASPDYLARHGTPRRASDLQRH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPDYI 248 + + +E + V P P + V + + + LG GI LPD+ Sbjct: 186 CCLHYRYPSTGKLEQWPLKTAVGAPA--PELPLTLVCNSVETRIFLALGDLGIVCLPDFT 243 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ + LV +M++ + T++ +P + + KL+ F Sbjct: 244 IRQELASGRLVTVMDERTRGNATMWALWPASRHPSPKLRVF 284 >gi|171322714|ref|ZP_02911464.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171091943|gb|EDT37406.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 320 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDIAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185 Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN + + ++ + D + V+ L VN + + G+GIA Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|91777464|ref|YP_552672.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690124|gb|ABE33322.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 295 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F A SGSF AA +S R + LE VG L R R +LTE G + Sbjct: 7 MAIFVKAAESGSFAAAALAFGISSQMAGRHVIALEERVGAPLLARTTRRQSLTEIGQIFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + + S P G+LR+ + G L + +L P++Q+ L Sbjct: 67 ERCKALLADAEAAESVAMDFSASPRGRLRVTAPVTFGSCCLAPLITRYLRANPEVQVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + + AIRL P+ SS+I + L+ + A A+P YLK EP + + L Sbjct: 127 LTDRFVDLVDEGYEVAIRL-GPLSDSSMIAKPLMPYRLLACASPAYLKEHGEPRTPEALA 185 Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H + F + +N W+ R G+ ++ Q N +++ + G GIAL Sbjct: 186 RHECLGFSF---TSLPPYNEWVFGSAR--GKHAVTVTGRFQANDTKALIAAAIDGFGIAL 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+ +KD+ LVR++ P ++ + A + T KL+AF + + Sbjct: 241 APEIAIKDDIAAGRLVRLLRKYEAPERPMHALF-TARRPTPKLRAFIDLV 289 >gi|260549462|ref|ZP_05823681.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407571|gb|EEX01045.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624] Length = 311 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 16/264 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A GSF+ AA L L+ +++SR ++ LE +G++LF+R R LTLTE G Sbjct: 6 NLESFIRSAEHGSFSAAARHLALTPAAVSRNVAQLEQNLGVRLFHRSTRNLTLTEAGEHF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++TT E S P G L+I+ + G + + +F+ YPDI+++ Sbjct: 66 FTSIRDNLNNIQTTISEFNTDSSHPKGTLKISLSAGFGVEYILPLMPDFMNKYPDIKLEW 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L NK +++ D D AI + +I+R L +HM A+P++LKN P +++ Sbjct: 126 HLSNKQVNLITDNFDAAIGSGFKL-GQGIIKRSLSPLHMIIVASPNFLKNKILPSHPEDI 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSG 240 + I + ++ ++ GE + L +N L ++ Q VLG G Sbjct: 185 SNWDGIIMRSPQTGKLHEYKFIGPDQ---GE---AYLNLNEKLIADDPSALHQGAVLGMG 238 Query: 241 IALLPDYIVK---DNPNLVRIMED 261 IA + K +N L+RI+ + Sbjct: 239 IAAISTAHAKSYIENGTLIRILPE 262 >gi|171317263|ref|ZP_02906461.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171097582|gb|EDT42418.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 323 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R++ + + F+ AA +L + S++SRQ+ LE +G++L R+ R TLT G + + Sbjct: 30 MRIYRCLVEAKGFSAAAARLDTTHSTVSRQLKLLEASLGVQLLNRNTRNFTLTAAGERYY 89 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ ++E ++ ES KPSG LR++ + +G + L F +PDI++ + Sbjct: 90 AACMEILERVEAAAEDVAESPRKPSGTLRVSMPLSIGTLEMPDWLPSFRRSFPDIRLDVS 149 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ++ + D A+R+ + S L+ R L A+P Y+ P + +L Sbjct: 150 CSDRFSNLVGEGFDVALRISGDLPDSELMARTLAVSDEILVASPDYIARHGMPRTPAQLA 209 Query: 188 KHNLITFGDLIPKCMED-FNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H L+ + ED NW T R + L++++ +I V G GI Sbjct: 210 THELLPY-----SGREDGGNWRLTPSRGTAVSVKLDGYLRIDTITAIHASAVTGLGIGAF 264 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290 V+ + R++ + P +T+ Y YP++ + K++AF +F+ Sbjct: 265 THLTVRGDIERGRLVH--VLPRYTLAKRKYYALYPKSRHVSPKVRAFIDFV 313 >gi|16126591|ref|NP_421155.1| LysR family transcriptional regulator [Caulobacter crescentus CB15] gi|221235373|ref|YP_002517810.1| LysR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13423879|gb|AAK24323.1| transcriptional regulator, LysR family [Caulobacter crescentus CB15] gi|220964546|gb|ACL95902.1| transcriptional regulator, LysR family [Caulobacter crescentus NA1000] Length = 302 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 121/274 (44%), Gaps = 13/274 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW++ R F V A GSF+ AA L LSQ ++SRQI LE E G+ LF R RGL LT Sbjct: 6 LRFDWNRARAFLVAAEEGSFSAAARALGLSQPTLSRQIDALEAEWGVVLFERAGRGLALT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G ++ + + + + + +G + I+ + +LL + E YP Sbjct: 66 SGGLEVLQAMRGMGEAASLVSLAVSGQAEAIAGPIAISASEVNAAHLLPPIVSELRATYP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I+++ N D+ AD AIR Q L+ RK+ H YA P Y+ +P Sbjct: 126 GLEIEVVATNAPSDLRRREADIAIRNMVSTQ-PELVCRKIRDDHAFMYATPDYIAKLGQP 184 Query: 181 LSIQELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 + L + F D++ + + P+ + +++L + G Sbjct: 185 QTFAALADAEFLGFAATDVLIRALNGLG------VPVSSRNFPVV-CDNHLVQWELVKRG 237 Query: 239 SGIALLPDYIVKDNPNLVRI---MEDVITPSFTV 269 GI L+ I P + R+ M +I P + V Sbjct: 238 VGIGLITADIGDAEPAVRRVLPEMAPIIVPMWLV 271 >gi|307300374|ref|ZP_07580154.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306904540|gb|EFN35124.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 318 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 26/302 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F G F+ AA ++ S++S+ + LE +G++L R R L LT +G Sbjct: 11 EMEIFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + T + ++ + + P G++R+ G ++L + EF +P + + + Sbjct: 71 YERTVRILADIDEAE-RSASAGESPVGRVRLNVNASFGTHVLMPLVPEFRAHFPAVSLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ + +D+ AD AIR P++SS+LI RKL M AAP Y++ P S++EL Sbjct: 130 VMTDAVVDLMEARADVAIRA-GPLKSSTLIARKLGATRMMIVAAPSYIERNGMPSSLEEL 188 Query: 187 DKHNLITFGDLIPKCMEDF--NWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 H + F C W D GE P +QV+ + Q + G+G Sbjct: 189 KGHERLGF------CYARAVDGWPLRTD---GETVVLPASGAVQVSDGEGLRQLALAGAG 239 Query: 241 IALLPDYIVKDNPN---LVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +A L ++ V+++ + LV ++ED+ + VY AL +++A +F+ Sbjct: 240 LARLAEFTVREDVSARRLVPVLEDLNPGDLEEVHAVYLGQGGALP--ARVRAVLDFLARH 297 Query: 294 AR 295 AR Sbjct: 298 AR 299 >gi|254476031|ref|ZP_05089417.1| transcriptional regulator, LysR family [Ruegeria sp. R11] gi|214030274|gb|EEB71109.1| transcriptional regulator, LysR family [Ruegeria sp. R11] Length = 292 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 6/283 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DW+ +R F A SGS + AA +L L+Q ++SRQ++ LETE+G+ LF R R L LT+ Sbjct: 3 SPDWNHIRAFLATADSGSLSAAARKLGLTQPTLSRQVAALETELGLLLFERVGRSLELTQ 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + + + + + G +RI + + +L L++ P Sbjct: 63 AGRELLDHSRTMGQAAQALSLSATGQAQSIDGTIRITASDMMSAYVLPEVLQQLQRRAPR 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I ++ N D+ AD AIR +P Q LI R + H YA+ YL P Sbjct: 123 LTIDVVATNDIRDLMRREADIAIRHVRPDQ-PDLIARLVQEASGHFYASRGYLDKRGRPE 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H+ ++FGD + +E +L + P+ + + +S L + G GI Sbjct: 182 RYSDLADHDFVSFGD-TDRMIE---YLVPMGIPVTAEQFR-IGSSSGLVAWELVKQGFGI 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + D + P + R+++D +F ++ L + +++ Sbjct: 237 TPMSDDVAAKCPEVERVLQDAGPITFPIWLTTHRELHTSRRIR 279 >gi|71281974|ref|YP_268199.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71147714|gb|AAZ28187.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 300 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V +GS + A+ + SSISRQ++ LE E+G+ L R +R + LTE G Sbjct: 8 RLHYFNCVVETGSISKASRIFDVQPSSISRQLTALEKELGVLLLKRTSRNIGLTEAGQTY 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + ++ L+ + + + KP G L+++ + + + + F LYP+I ++L Sbjct: 68 YKYSQKIVSDLDEARCAVNDLQQKPKGNLKVSMAVGFAECCILPMIPTFTKLYPEINLEL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + +D+ + D AIR + ++ S+LI KL + + A+P Y+ P S Sbjct: 128 EMTGRVVDLVEENVDVAIRTGR-LRDSNLIALKLTSNNFLLCASPQYITEHGTPKS---- 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 NL F + + +W D+P S L V S Q + +G+AL+P Sbjct: 183 -PFNLTDFECIRYEYAGWRDWYLMNDKPTKLTIKSGLTVRSINGQKQLILNHAGLALMPK 241 Query: 247 YIV---KDNPNLVRIME-DVITPSFTVYFCYPEALKN---TGKLKAFRNFI 290 + V DN LV+++E ++ +P ++ Y LK + K++ F +FI Sbjct: 242 WSVINELDNGTLVQVLEQNIFSPYESMSSTYAIYLKRELISPKVRVFIDFI 292 >gi|330979507|gb|EGH78110.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 301 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 10/293 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ P+G LRI + G +L L EF +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL +SS LI R L + AAP YL P + Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPTHPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +HN + F P E W T D + + N+ + Q G Sbjct: 184 DLRQHNCLAFA--YPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAGM 241 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ +LPD +V+ + LV + D P Y + KL++F + Sbjct: 242 GVVMLPDALVQRDLQEGRLVALFPDYHLPRRPTNLLYVQDRYRLPKLRSFVEY 294 >gi|298488168|ref|ZP_07006205.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157447|gb|EFH98530.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 297 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L ++ S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R+S NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVSGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +PD + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|260901460|ref|ZP_05909855.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|308107669|gb|EFO45209.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] Length = 300 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA + L++S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 5 DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 VY + T + + SG ++I G+ +L G + EF YPDI I Sbjct: 65 FFVHAKAVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI + D AIR + SSLI RKLV + A+P YL P E Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPSE 183 Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L KHN + + ED + TVD L N+ ++ +LG Sbjct: 184 LTKHNCLVYSYQETGAREWAFKSEDKMYQVTVD--------GNLCTNNSSALRNVALLGQ 235 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+ +P +V ++ +L+++ ++ +Y YP + K+K F + ++ Sbjct: 236 GVIYVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290 >gi|119899157|ref|YP_934370.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119671570|emb|CAL95483.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 313 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/272 (25%), Positives = 130/272 (47%), Gaps = 8/272 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V +GSF A + L +S++++SR + LE +G +L R R L+LTE G Sbjct: 6 ELSVFVAVVDAGSFVGAGDALRISKAAVSRCVQDLEARLGARLLQRTTRRLSLTEAGRAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ L+ + + +P G+L++ + G L +FL YP I++ + Sbjct: 66 YARARQLLADLDEADGAVGAVTGQPVGRLQVNAPLSFGVRYLAPLWGDFLARYPGIELDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D A+R+ + +Q SSL+ R+L T + AAP YL P + ++ Sbjct: 126 SLSDRMVDLVDEGYDLALRITR-LQDSSLVSRQLATTRIVMCAAPAYLAQHPAPQRLADI 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H +I + + F V+ + PR + N+ + + G GI + P Sbjct: 185 AHHAVIAYSYAQSGDVWRFVGPQGVEEEVQTRPR---FRANNGDTCRAAALAGQGIVMQP 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 ++V D+ L+R++ + ++ YP Sbjct: 242 TFLVGDDLAAGRLLRVLPEYGGVEVGIHAVYP 273 >gi|260775854|ref|ZP_05884750.1| transcriptional regulators LysR family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608270|gb|EEX34439.1| transcriptional regulators LysR family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 301 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 9/245 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSF+ A++ + +Q++IS++++GLE ++G KL R +R TLTE G Sbjct: 7 MRSFIRVVETGSFSAVAKEQNTNQATISKRVAGLEKKLGTKLLVRGSRRHTLTEAGQAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + ++ + E + + P G L+I G + + EFL YPDI + + Sbjct: 67 ERVSHIVAAIDEAEAEARSLTATPKGHLKITVPTMFGSLYVAPVISEFLASYPDIDLDIK 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D + + + D AIRL +Q SS++ + L + A+P YL+ P ++EL+ Sbjct: 127 FDENLVALVKEGIDVAIRLGD-LQDSSMMAKTLGYDELIMVASPTYLERHPAPTRLEELN 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 HN + + L PK W T +R G I Q ++ + + + + +GIAL+ Sbjct: 186 AHNCLIY-SLSPK--RGTVW--TFNRTPGASEIPVSGNFQCDNGIGLKEMLLAHAGIALM 240 Query: 245 PDYIV 249 P ++V Sbjct: 241 PRWMV 245 >gi|78047252|ref|YP_363427.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035682|emb|CAJ23373.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 338 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 8 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 68 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 240 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293 >gi|311695609|gb|ADP98482.1| transcriptional regulator, LysR family protein [marine bacterium HP15] Length = 296 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 21/263 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L V SGSF+ AAEQL +S + +SR ++ LE + L R R + LTE+G Sbjct: 8 DDLHFLLSVVDSGSFSGAAEQLEVSVTRVSRAVTRLEASLNTTLLNRTTRKVALTEEGHL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 LE + +L +P+G+LR+ + + +++EF YPDI+++ Sbjct: 68 FVETVRGGLAALEEAEEQLAIRKQRPAGRLRVDAANPFLLHQIVPHVREFRAAYPDIELE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLS 182 L ++ +D+ D AIR+ P+ S+L R L + A+P YLK +C P Sbjct: 128 LTASDQIVDLLERRIDIAIRI-GPLDDSTLHARVLGRSPLSVVASPEYLKRKGDCDSPAD 186 Query: 183 IQELDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEP-RISCLQVN--SYLS--- 230 +QE H++I F P+ + E T+ GE R CLQ N +YLS Sbjct: 187 LQE---HDIIGF--TAPESLNFWHLGEGMRVRPTIRASSGEAVRQLCLQGNGIAYLSRFM 241 Query: 231 IMQYCVLGSGIALLPDYIVKDNP 253 I + GS + +L DY+ + NP Sbjct: 242 IAEDLGKGSLVEMLDDYVARPNP 264 >gi|238028800|ref|YP_002913031.1| LysR family regulatory protein [Burkholderia glumae BGR1] gi|237877994|gb|ACR30327.1| LysR family regulatory protein [Burkholderia glumae BGR1] Length = 322 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 147/290 (50%), Gaps = 10/290 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +S+ P G+LR+ + G + + ++ Y D+ +++ Sbjct: 66 YERLVQALTELDEAGQAVGAASIVPQGRLRVTSLSAFGLRHVMSAVTDYAARYADVTVEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL+ P ++ + Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPFGLKSSSLVARQIATAHILLVASPAYLEEHGMPAALAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 L++HN + D P ++ + + + +S + ++L ++ VL GSGIA+L Sbjct: 186 LERHNYLRR-DTGPSSIDSAAFESAAASRV---TLSGNLIVNHLEALRLAVLNGSGIAML 241 Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 +V D+ LV ++ + + P +Y Y + K+++F +F+ Sbjct: 242 GTEVVGDDIEAGRLVPLLLEAMPPRELPIYAVYASRRHVSAKVRSFVDFL 291 >gi|120600019|ref|YP_964593.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1] gi|120560112|gb|ABM26039.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1] Length = 299 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 134/283 (47%), Gaps = 21/283 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +++ D +R+F+VVA+ GSF AAE L + S++SR+I+ LE +G++L +R A + LT Sbjct: 3 LNYSLDDMRLFWVVAQQGSFKLAAEHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ +L EL + GKLRI+ I+ L +L F L YP Sbjct: 63 ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYLWLGESLNAFQLRYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I I L L N +ID+S + D A R+ +P + I R L TI A Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISF-VLCASSSATQWHSL 180 Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ 233 SI+EL++H +I T+ +DF + EPR + L V+ Q Sbjct: 181 QSIEELEQHPVIIAKPAKTWRLQHNITGQDFEF---------EPRGNIKLAVDDMAIASQ 231 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + G GI LLP + + + L++I+ + T Y Y Sbjct: 232 AVMAGLGIGLLPISMASERIQSGKLIQILPEWKGAPRTAYLMY 274 >gi|311109283|ref|YP_003982136.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763972|gb|ADP19421.1| bacterial regulatory helix-turn-helix protein, LysR family protein 200 [Achromobacter xylosoxidans A8] Length = 296 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 139/303 (45%), Gaps = 27/303 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F VA+ +F+HAAE L++ S++SR++S LE +G++L R R + LT Sbjct: 1 MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSIGMRLLNRSTRKIDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ + + +L + +V+P G+LRI+ L Q L + EF +P Sbjct: 61 EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVISEFREQHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 DI+ L + ID + D +R ++P SSLI RK+V + YA+P YL E Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQP--DSSLISRKIVLMAHQLYASPEYLARHGE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +L H L P E+ F L + D ++ +QV+ LS +L Sbjct: 179 PRVPADLSHHEC-----LRPTMREESSFWMLHSGD------KVERVQVSGRLSANNVGML 227 Query: 238 ----GSGIALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 G G+ + P + LVR++ + ++ P + K KAF Sbjct: 228 GRLAGQGLGITPLLVFDAMERAIKQAGLVRVLPEWSLTPLPLFALLPSRML-PAKTKAFL 286 Query: 288 NFI 290 +FI Sbjct: 287 DFI 289 >gi|297620796|ref|YP_003708933.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] gi|297376097|gb|ADI37927.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] Length = 302 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 32/291 (10%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----KLHRV 69 V R GS AA +L +S +++S+QIS LE E+GI+L R R L T+ G+ ++HR+ Sbjct: 13 VGRHGSLAGAARELGVSSAAVSKQISKLEKELGIQLLVRTTRKLAFTDIGAAYLEQVHRI 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL- 128 E LE ++ + + P GKLR+ T ++ N+ EFL LYP I+++L + Sbjct: 73 IEE----LEASKALVSQMKAIPCGKLRVFCTPHFASRIVVPNIAEFLNLYPKIELELEIG 128 Query: 129 ------DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + ID+ M + A S L+ R+L+T AAP YLK EP Sbjct: 129 ERIPHFEGEKIDVMMGNSMQA--------GSDLVHRRLLTTRYAICAAPSYLKRYGEPKH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H ++T +C ++ + + P I +VN ++ G GI Sbjct: 181 FNDLKDHRILTHR---MRCPDNLLYFKDKKKVAFAPYI---KVNDAKILVDLAFQGIGIV 234 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L Y VK + L + +++ +Y P K++A +FI Sbjct: 235 QLHHYTVKKYLQSGELQELFQNLSQDDVPIYVVLPPRKYTPRKVRALIDFI 285 >gi|126443454|ref|YP_001061685.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126222945|gb|ABN86450.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] Length = 303 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VVA +G F+ AA QL + SS++R + LE +G+ L R R +TLT+ G+ Sbjct: 7 LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ +P G LR++ + + +L +L FL YP + + L Sbjct: 67 EQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D D A+R+ P + L+ R L A+ YL P + +L Sbjct: 127 VSDAYLDLATDRIDVAVRIGAPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 H + F P +W + D + + + L I++ VL G G+AL+P Sbjct: 187 AHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVPM 242 Query: 247 YIVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ L+ + E +TP VY Y +++ K++ F F+ Sbjct: 243 WLVHDDIVAGRLLPLFESWRVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFL 293 >gi|325915436|ref|ZP_08177750.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325538318|gb|EGD10000.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 339 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 8 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 68 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 240 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293 >gi|213157584|ref|YP_002319629.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213056744|gb|ACJ41646.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] Length = 300 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 13/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QN L L FL P Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKNNP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QLI+ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237 S EL H +++ + + ++ L D + + ++S + N Y+ + Q Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD +D + LV+I+ D + YP G L A R FI Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289 >gi|118591577|ref|ZP_01548974.1| probable transcriptional regulator protein, LysR family protein [Stappia aggregata IAM 12614] gi|118435905|gb|EAV42549.1| probable transcriptional regulator protein, LysR family protein [Stappia aggregata IAM 12614] Length = 304 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 135/287 (47%), Gaps = 6/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AA+ L + +++++ I LE + KL R R + +T G+ + Sbjct: 7 MRAFVRVVETGNFTRAADSLQMPKATVTNLIQNLEKHLQTKLLNRTTRRVIVTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +++ L ++ P G+LR+ + + L F YPDIQI + Sbjct: 67 ERAAQIVSEVDELDASLAQAQNNPGGRLRVEMSGAFADWFVIPALGGFYEKYPDIQIDIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R P SLI R++ + + AA YLK P S ++ Sbjct: 127 IGDRTVDYLAENVDCALRGGAP-ADQSLIARRVAEVGLMTCAAASYLKRAGIPESPADVQ 185 Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ +++ + + + + R C VN S + + G GIA +PD Sbjct: 186 ANHHCVSYFVAAKGRTNPMTFRKDGEEILVDGRYHC-SVNDARSYVAAVLAGHGIAQVPD 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V++ +LV ++ + + +Y YP + K++ F +++ Sbjct: 245 FMVREELERGDLVPVLAEWSADTIPLYIVYPPNRHLSNKVRVFVDWL 291 >gi|311106842|ref|YP_003979695.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310761531|gb|ADP16980.1| bacterial regulatory helix-turn-helix protein, LysR family protein 116 [Achromobacter xylosoxidans A8] Length = 297 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GS T AA + +S + ++ I GLE +G++L R R +LTE G Sbjct: 7 MEVFVAVVELGSLTAAAARHEMSPAMAAKHIKGLEARLGLRLMNRTTRRQSLTEAGQAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + P G LRI +T+ G L + E+L YPD+ + L Sbjct: 67 ARCKVILSDIRDAEQGAEAMRSAPRGHLRITSTVTFGSFALAPAIAEYLSEYPDVSVDLA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D A+R+ +P S L+ RK+ M AAP YL+ P + +L Sbjct: 127 LSDAVEDVVASRYDLAVRIGEPAD-SGLVARKIGRYQMIICAAPAYLERHGTPETAGDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 +H + F + W D G + V N+ ++ Q + G GI L P+ Sbjct: 186 RHQCLDFSYWNRRT----GWRLNADEGSGAAYPAGRFVSNNGQALRQAALAGFGIVLQPE 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LV I++ + + YP+ K KL F F+ Sbjct: 242 LLLAEDVRAGRLVPILQSAWPAARPITMLYPKDRKALPKLTTFVEFM 288 >gi|294625160|ref|ZP_06703803.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600532|gb|EFF44626.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 338 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 8 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 68 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 240 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293 >gi|323526759|ref|YP_004228912.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323383761|gb|ADX55852.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 312 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + + YP++ ++L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQERYPEVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ L + S L+ ++L + A A+P YL+ P + +L Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSVACASPAYLEKHGVPHTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 + H+ + ++ W T D P GE I + QVN ++ G G+ Sbjct: 186 EHHSCL---QMVTPVFPPDKW--TFDGPNGEETITLGPATFQVNVAEAMAVAVASGMGVG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 L+P Y LVR++ D + +Y YP R ++ K R W Sbjct: 241 LIPIYSAISGLRKGELVRLLPDYTSQEMNLYALYPS-----------RQYLDAKIRTW 287 >gi|190890011|ref|YP_001976553.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190695290|gb|ACE89375.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 301 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V +GS + AA +L LS+S +S +++ LE +G L +R R L+LTE G+ Sbjct: 5 EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLSLTEDGAV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++E ++ E SG +RIA + G+ L L FL +P+I + Sbjct: 65 FLERAGRIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIHLT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D++ +D + D D IR P+ S L+ KL A+P YL P S+ + Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCASPDYLARQGMPSSLAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H I + + + + D+ + T + I L +N+ + + G GIALLP Sbjct: 184 LNSHRGIFYTN---RGVADWRF-QTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239 Query: 246 DYIVKD--NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFI 290 +I L+ ++ P +Y +P + KL+A + + Sbjct: 240 AFIAGPAIREGLLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287 >gi|330953242|gb|EGH53502.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae Cit 7] Length = 301 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 14/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ + Sbjct: 7 MRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGTAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV + ++ +++ P+G LRI + G +L L EF +P++++ L+ Sbjct: 67 ERCLEVLGLVAQSEQLAEQAQGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVKLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D AIRL +SS LI R L + AAP YL P+ EL Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNIPESSPLIARALQDYTLTICAAPDYLARNGTPIHPAELR 186 Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 HN + F P E W T GE + + N+ ++ Q G G Sbjct: 187 GHNCLAFA--YPAGDEWRTAGTQWRMTGAE--GEVLVDVSGSMVANTSAALYQAARAGLG 242 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + +LPD +V+ + L+ + D P Y + KL++F + Sbjct: 243 VVMLPDALVQRDLQEGRLIALFPDYHLPRRPTTLLYVQDRYRLPKLRSFVEY 294 >gi|170701989|ref|ZP_02892910.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133110|gb|EDT01517.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 320 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185 Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN + + ++ + D + V+ L VN + + G+GIA Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|87118762|ref|ZP_01074661.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86166396|gb|EAQ67662.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 294 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 25/291 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F + + AA +L + ++++R++ LE V +L +R AR LT +G Sbjct: 3 DDIVLFIHIVQQQGLAPAARELDMPVATVTRRLQRLENSVRCRLIHRTARRFELTSEGEI 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R S + + E TQ L G L++ I+L LQ F+ +PDIQ++ Sbjct: 63 YFRAYSHLVDQFEQTQQSLSGELNDMRGSLKVMAPINLSAGFLQPMWSGFIQAFPDIQLE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L N+ D+ + AD AIR+ P S+ Q++L + A+P YL EP ++ + Sbjct: 123 LSLSNQLEDMLAEKADLAIRV-GPQPDSAFYQKRLGEVATMLVASPDYLTKFGEPKNLAD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239 L H LI ++ +W T+ +P G+ P +S L VN + G Sbjct: 182 LSHHKLIASQAIM-------SW--TLQKPGGQEKTSLSPALSTL-VNDVNIAASFVRDGL 231 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 GI+LLP V+D N +VR++ D +Y +P +G+L R Sbjct: 232 GISLLPTTEVQDYLNTGEMVRVLADWQGLDRVIYAVWP-----SGRLMNVR 277 >gi|241763319|ref|ZP_04761375.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241367471|gb|EER61770.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 303 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 24/284 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR SFT AA QL +SQS++S I LE +G++L R R ++ T G Sbjct: 5 NYNDLLAFMAVAREQSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSPTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + ++E + E S KP+G +RI TT + +L L + L YPDI+ Sbjct: 65 ERLLQNVAPRFQEIEAELTAIGELSDKPAGTVRITTTEHAARTVLWPKLAKMLSKYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I++++ +I + D +RL + S + + + A+P YL + EP + Sbjct: 125 VEMIVESRLAEIVAERYDMGVRLGDTLTSDTTAVCISADLPVAIVASPAYLAHHPEPKTP 184 Query: 184 QELDKH-----NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 Q+L H L++ G L + W L + I L N + I+ + Sbjct: 185 QDLIHHACINLRLMSRGGL-------YAWELKKGKQQINAHVEGQLVFNEPMQILDAALS 237 Query: 238 GSGIALLPDYIVKD--NPNLVR-IMEDVIT---PSFTVY-FCYP 274 G G+ Y+++D P + + + V+T PSF Y CYP Sbjct: 238 GFGLG----YVLEDMAQPYIAQGRLRQVLTDWCPSFPGYHLCYP 277 >gi|126441263|ref|YP_001059505.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126450165|ref|YP_001080914.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|134277302|ref|ZP_01764017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|217421619|ref|ZP_03453123.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|237812843|ref|YP_002897294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|251766967|ref|ZP_04819900.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254177668|ref|ZP_04884323.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254179290|ref|ZP_04885889.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254197239|ref|ZP_04903661.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254200178|ref|ZP_04906544.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254258199|ref|ZP_04949253.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254297176|ref|ZP_04964629.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|254358072|ref|ZP_04974345.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|126220756|gb|ABN84262.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|126243035|gb|ABO06128.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|134250952|gb|EBA51031.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|147749774|gb|EDK56848.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|148027199|gb|EDK85220.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|157807708|gb|EDO84878.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|160698707|gb|EDP88677.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|169653980|gb|EDS86673.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|184209830|gb|EDU06873.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|217395361|gb|EEC35379.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|237504897|gb|ACQ97215.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|243064319|gb|EES46505.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254216888|gb|EET06272.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 327 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 33 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 92 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 93 LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 152 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 153 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPGTLDDL 211 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W + R+S ++ + + ++C+ G G+A Sbjct: 212 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 268 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 269 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 316 >gi|299069026|emb|CBJ40275.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 298 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 14/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L F V R GSFT AA QL +SQS++S I LET +G++L R R ++ TE G Sbjct: 5 NFSALLAFVTVTREGSFTRAAAQLGVSQSALSHAIRTLETSLGVRLLTRTTRSVSPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + S +++T L E KPSG +RI T +++L + +FL YPDI+ Sbjct: 65 EHLFQKISGPMEEIDTEVQMLSEFRDKPSGTIRITATDYAIRSILWPKVTKFLTQYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI D +DI+ D +R + + + R A Y P + Sbjct: 125 VELICDYGLVDIAAQRYDAGVRFGEQLAQEMIAVRLGPDERFALVATKGYFAKHPAPKTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISC-LQVNSYLSIMQYCVLGSGI 241 Q+L H + +P + W G + R+S L N +++ + G G+ Sbjct: 185 QDLVDHQCVNL--RLPTHGGLYAWEFAKKGGRGLKVRVSGQLTFNGIYDVLEASLAGFGL 242 Query: 242 ALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P+ YI K LVR++E+ P ++ Y Y + + +A R FI Sbjct: 243 CYVPEAMALPYIAKG--RLVRVLEE-WCPLWSGYHLYYPSRRQPS--RAMRLFI 291 >gi|294502709|ref|YP_003566771.1| LysR-family regulatory protein [Yersinia pestis Z176003] gi|262360738|gb|ACY57459.1| LysR-family regulatory protein [Yersinia pestis D106004] gi|262364685|gb|ACY61242.1| LysR-family regulatory protein [Yersinia pestis D182038] gi|294353168|gb|ADE63509.1| LysR-family regulatory protein [Yersinia pestis Z176003] Length = 304 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSFT AA+ L L ++ +S+++S LE +G++L R R L LTE G Sbjct: 1 MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + L+ SV+P GKLR+ + + + ++ +L EF YP+I ++L Sbjct: 61 AKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + DCAIR ++ SS I R + +H+ YAAP YL+ QEL Sbjct: 121 GSDRISHLLDNGIDCAIRGGH-LEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELS 179 Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I++ G P F W L + P L + + C+ GSGI Sbjct: 180 VHRRISWFTGQRNP-----FIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG 234 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V+ LV ++ + ++ YP + +++ F ++ Sbjct: 235 APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 282 >gi|261820422|ref|YP_003258528.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604435|gb|ACX86921.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 293 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 11/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F V +GSF+ A+ +L + Q ++S+ I LE ++ L R RGLT TE G Sbjct: 6 ALETFICVFETGSFSAASRRLGIGQPAVSKAIMQLEQQLATPLLIRSTRGLTPTEAGQHF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L Q + + SG+LRI + + + L EF+ +P + + + Sbjct: 66 YEQIAPALTMLGEAQDHVVSGNAALSGRLRICAPVTFARLHIMPRLHEFMAEHPQLNVDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ILD++ ID+ + D A+RL + ++ SSLI ++L + M A P Y P+S L Sbjct: 126 ILDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCTMRLLATPDYFSAHGIPVSPDAL 184 Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + + + G+ + + + T+ P G R+S + + + G+G+A+ Sbjct: 185 SAYPAVIYLQGERTDRWIFSQDGTQTMIFPNGRIRVSAAE-----GVRATVLSGAGLAVA 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ ++ ++ +++ ++ YP + +++ F NF+ Sbjct: 240 SEWMFAPELESGQVITVLDSWSLGKMDLWAVYPGGRMTSSRVRTFTNFV 288 >gi|172061618|ref|YP_001809270.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994135|gb|ACB65054.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 323 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ L F YPDI + L Sbjct: 67 EHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPDITLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPQEIADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + + G G+ Sbjct: 186 DHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP + K++ F +++ Sbjct: 244 FMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWL 290 >gi|262371490|ref|ZP_06064805.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262313576|gb|EEY94628.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 308 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 1/190 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +GSF+ A QL + S+ISR IS LE +G +L R R L L+E G ++ Sbjct: 12 EMAIFVKVVETGSFSETARQLGYTPSAISRSISRLEKALGTQLIQRTTRKLALSESGKQV 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H E+ + +T S KP G +RI+ +G L+ + EFL YP++ +Q+ Sbjct: 72 HVYCLEMLNAAQTVIESSGHFSEKPEGVVRISVPKAVGHYLIHPYIPEFLERYPEVDVQM 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+++ ID D D AIR+ S L RKL I A P YL+ P ++L Sbjct: 132 LLEDRHIDFIDDQIDLAIRITNE-PSLGLKGRKLFDIEHILVATPEYLEKVSNPKHPRDL 190 Query: 187 DKHNLITFGD 196 H I G+ Sbjct: 191 KAHQCIYLGE 200 >gi|15966591|ref|NP_386944.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307319657|ref|ZP_07599083.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|15075863|emb|CAC47417.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021] gi|306894779|gb|EFN25539.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 318 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 26/302 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F G F+ AA ++ S++S+ + LE +G++L R R L LT +G Sbjct: 11 EMEIFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + T + ++ + + P G++R+ G ++L + EF +P + + + Sbjct: 71 YERTVRILADIDEAE-RSASAGESPVGRVRLNVNASFGTHVLMPLVPEFRAHFPAVSLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ + +D+ AD AIR P++SS+LI RKL M AAP Y++ P S++EL Sbjct: 130 VMTDAVVDLMEARADVAIRA-GPLKSSTLIARKLGATRMMIVAAPSYIERYGMPSSLEEL 188 Query: 187 DKHNLITFGDLIPKCMEDF--NWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 H + F C W D GE P +QV+ + Q + G+G Sbjct: 189 KGHERLGF------CYARAVDGWPLRTD---GETVVLPASGAVQVSDGEGLRQLALAGAG 239 Query: 241 IALLPDYIVKDNPN---LVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +A L ++ V+++ + LV ++ED+ + VY AL +++A +F+ Sbjct: 240 LARLAEFTVREDVSARRLVPVLEDLNPGDLEEVHAVYLGQGGALP--ARVRAVLDFLARH 297 Query: 294 AR 295 AR Sbjct: 298 AR 299 >gi|298717475|ref|YP_003730117.1| transcriptional regulator [Pantoea vagans C9-1] gi|298361663|gb|ADI78444.1| Putative transcriptional regulator [Pantoea vagans C9-1] Length = 340 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 7/243 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F +VAR +FT AA QL +S+S +S I+ LE +G++L R R ++LT+ G + Sbjct: 51 NDLRAFTIVAREKNFTRAAAQLGMSRSGLSHAITALEARLGVRLLTRTTRSVSLTQAGVR 110 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + L++ + L+ S KP+G +RI ++L L+ L +PDIQI+ Sbjct: 111 LFSTLQPMLSTLDSELVALRALSEKPAGTVRITAHDHAIDSILWPRLQPLLKRFPDIQIE 170 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D DI D +RL + + R +M A+P YL+ P + Sbjct: 171 LSVDYSLTDIVAQQFDAGVRLGDIVDKDMIAVRIGPDFYMAVVASPEYLQGRPLPAVPAD 230 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQV--NSYLSIMQYCVLGSGIA 242 L H I +P + W +PI R++ V N+YL +MQ + G G A Sbjct: 231 LTAHQCINL--RLPTHGGLYAWDFEQEGKPI-TVRVTGQTVFNNTYL-MMQAALDGLGFA 286 Query: 243 LLP 245 +P Sbjct: 287 YIP 289 >gi|226198957|ref|ZP_03794520.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|225929057|gb|EEH25081.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] Length = 327 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 33 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 92 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 93 LEDCQRIINDIQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 152 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 153 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPGTLDDL 211 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W + R+S ++ + + ++C+ G G+A Sbjct: 212 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 268 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 269 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 316 >gi|332995665|gb|AEF05720.1| LysR family transcriptional regulator [Alteromonas sp. SN2] Length = 303 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 3/247 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF A GS + A +L++S + ++ + LET +G KL +R R L+LT+ G Sbjct: 5 YTSMQVFVQAASRGSLSAAGRELNMSPAMATKHVDSLETRLGTKLLHRTTRQLSLTDAGR 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + LE + E+ + G+LR+ + G + + EF YP +++ Sbjct: 65 EYLQACQRILQDLEEAESEVSSQQHQAMGRLRLNAPLSFGTRFIAPLIPEFTHRYPLVEV 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + D+ + D +R+ + S L R+L M A+P YLK P + Sbjct: 125 DLGLSDTQQDLLKESWDLTVRIGH-LADSDLRARRLGNCPMRLCASPEYLKKHGTPNRVA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL HN +++ + W D I P L N+ +++ V G GI Sbjct: 184 ELSNHNCLSYS--LSSAQRGGTWAFGQDGKIQVPVTGNLMSNNGDALLAAAVKGQGIIYQ 241 Query: 245 PDYIVKD 251 P++IV + Sbjct: 242 PNFIVSE 248 >gi|170703626|ref|ZP_02894366.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170131461|gb|EDT00049.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 313 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+P Y+ P + +L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPHTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 ++H I G + P D W + P G+ I +VN ++ G GI Sbjct: 186 EQH--ICLGMVAPGFHFD-EW--ALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + N+VR+M + + +Y YP K++ + +F+ Sbjct: 241 GLPLYSAIGGLRSGNIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291 >gi|193067205|ref|ZP_03048174.1| transcriptional regulator, LysR family [Escherichia coli E110019] gi|192959795|gb|EDV90229.1| transcriptional regulator, LysR family [Escherichia coli E110019] Length = 299 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 +H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 EHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|115359471|ref|YP_776609.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284759|gb|ABI90275.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 293 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 5/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V ++ F AA+ L + S++SR+I LE +G++L +R R + TE G Sbjct: 5 DDMALFVEVVKAKGFRGAADALGMPNSTLSRRIGALEKAIGLRLLHRTTRKVEPTEAGLL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + +L E +PSG LR + L + EF YP I+ + Sbjct: 65 YYERSKRIVEEARLVHEQLGEMLAQPSGLLRASFPEGFANIFLAPLVAEFARRYPGIRFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + D+ D D AIR+ +P +S+LI R+L + H YA+P YL EP E Sbjct: 125 FDLSPRLADLVSDPVDVAIRMGEP-ANSNLIARQLARLPRHLYASPRYLDMLGEPQHPDE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + N TVD +G +NS I + L GIA+L Sbjct: 184 LVQHECLRLRGSKSDIWTVQNRDETVDVAVG----GRFLLNSVGMIQRLAALDMGIAILA 239 Query: 246 DYIVKDN 252 + IV D+ Sbjct: 240 ESIVTDD 246 >gi|299533154|ref|ZP_07046538.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298718684|gb|EFI59657.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 303 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 14/266 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ ++ +F V GS + AA QL ++ S++S+ I LE E G+ L +R R LTLT+ G Sbjct: 3 DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEQEAGLTLLHRSTRQLTLTDAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + EL +PSG+LR+A Q+ L +L ++P+++ Sbjct: 63 QRFYIQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHAAPA-LGRWLAMHPELR 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCRE 179 ++L++D+ ID+ D A+R +Q SS + R L A+PH++K R Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATLLCASPHWIKAHGSTPRH 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238 P + +L + D DF W ++ L V+++ S + Q+C G Sbjct: 181 PSELAQLPWLEMSRSDD----AQADFLWRQQDTAQEYRLQVRPLMVSNHRSAVQQFCEAG 236 Query: 239 SGIALLPDYIVK---DNPNLVRIMED 261 G+ALL + V + +LVR++ D Sbjct: 237 LGLALLSAHDVAASLETGSLVRLLPD 262 >gi|238896970|ref|YP_002921715.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|262040577|ref|ZP_06013817.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330001451|ref|ZP_08304012.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|238549297|dbj|BAH65648.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042069|gb|EEW43100.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537652|gb|EGF63866.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 299 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 21/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE L L + S+SRQI LE+ +G++L +R R + LT+ G + Sbjct: 7 MQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SG+LR+ + + ++ +L FL YP I+++L Sbjct: 67 ERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + A+P YL P S+++L Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLIARPLGKLTQINCASPDYLARFGYPQSLEDLA 185 Query: 188 KHNLITFGDLI---PKCME-----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H LI + + P E W+ T L VNS + C+ G Sbjct: 186 DHALIHYASTLGVRPPGFEVMIDGAVRWVKTG---------GILTVNSTETYQAACIAGL 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P V++ +L+ I+ V YP + ++ F ++ Sbjct: 237 GIIQVPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWL 290 >gi|197121452|ref|YP_002133403.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171301|gb|ACG72274.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K] Length = 311 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 139/291 (47%), Gaps = 18/291 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW L F ++RSGS AA++L + ++++ R+++ LE E+G+ LF R +G T Sbjct: 21 LDWGNLLFFLELSRSGSLARAAKRLGVDRNTVGRRVAALEEELGLPLFERGPQGWACTAA 80 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + S V + P+G +R+ T++ + +LL L +P + Sbjct: 81 GEELAALASRVEEDVLAIARHADARDRTPAGTVRLTTSVPVASHLLAPALPSLRARHPRL 140 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + D ++ D++ AD A+RL +P + L+ RK+ ++ YA+P + R Sbjct: 141 LLDVSADFRNYDLTRREADLALRLGRP-SDAGLVARKVASVAYGFYASPAFAAERR---G 196 Query: 183 IQELDKHNLITF-GDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L + ++ + G P + M+D + R + N+ L++ G Sbjct: 197 LLDLARDPVLAYEGATSPQERWMDD----------LAPARAVAFRCNTSLALAAAARTGI 246 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G A+LP ++ +P LVR ++ PS+ ++ L+ +++A ++ Sbjct: 247 GAAVLPCFVADGDPALVR-LDGPEPPSYDLWLLVHGDLRRVPRVRAVIEWV 296 >gi|52425265|ref|YP_088402.1| LysR protein [Mannheimia succiniciproducens MBEL55E] gi|52307317|gb|AAU37817.1| LysR protein [Mannheimia succiniciproducens MBEL55E] Length = 304 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 10/286 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F +A +GSFT AAE+L ++ S++S+ + LE + ++LF R R ++ TE G K Sbjct: 15 NELYFFVQIANAGSFTKAAERLGVTTSALSQNMRSLEKHLDVRLFNRTTRSISTTEAGEK 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + L E +P G +RI T+ ++ L+ FLL P I+++ Sbjct: 75 LLAEIAPHFLAIADAVRHLDEIRDEPQGTIRINTSEIAANLIIYPKLQPFLLANPHIKVE 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++DN+ +DI D +RL + + + + + M A+P YLK+ P I + Sbjct: 135 LVIDNRWVDIVAQGFDMGVRLGYAVFNDMIAVQISEPMKMVLVASPGYLKDKPLPKKIND 194 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L ++LI G W + +G + +N+ L Q + G GIA L Sbjct: 195 LTNYHLI--GSRFSSEHSQLEWEFMDKGQKVGFQPMPQFSINNDLRT-QAALDGFGIAWL 251 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 P+ V + N NLV I+ Y YP G KAF+ Sbjct: 252 PEIRVHEELKNGNLVEILPQYAYTYDPFYIYYP---NRKGNSKAFQ 294 >gi|212637060|ref|YP_002313585.1| LysR family transcriptional regulator [Shewanella piezotolerans WP3] gi|212558544|gb|ACJ30998.1| Transcriptional regulator, LysR family [Shewanella piezotolerans WP3] Length = 327 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 148/289 (51%), Gaps = 6/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L++F +++ GSFT AA +L+++QS++S++I+ LE ++G LF+R++R + LT QG Sbjct: 31 FDCLQIFVKISQLGSFTAAANELNITQSAVSKKIAWLENKLGFALFHRNSRQIQLTTQGV 90 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + L+E + G+L+++ + LL + +F+ L+P + + Sbjct: 91 QYLQYSERFIDEMTHFESSLKEELEQVKGQLKLSVPSSIATQLLLQPINDFMDLHPGLTV 150 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++++ +D+ D AIR ++ S R L A+P YL P+ Sbjct: 151 DTSVNDRQVDLIESNIDIAIR-AAVLEDSGYKARFLFNNQAVYVASPRYLLGREAPILAS 209 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L HN +T+ + P + VD + + + +S +++ +LG GI L Sbjct: 210 DLQSHNCLTYSLMSPSNIWSLRKGGKVDAKVMVKEV--FKSDSPELLLEMALLGRGITAL 267 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V + +L++++ + + +Y + +++AF +++ Sbjct: 268 PNWMVAEQLKTGSLIQVLTSYQSIALPMYAVFKNDDYQPYRVRAFIDYL 316 >gi|317404494|gb|EFV84903.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 334 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 139/296 (46%), Gaps = 19/296 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66 F VA G+F A ++L + +S++SR + LE ++G +LF R R +LT +G + Sbjct: 33 AFIAVAAEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRSTSLTLEGERFYEQ 92 Query: 67 -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + L+ + EL+E P+G+LR+ +T+ G+ ++ L+ F PDI ++ Sbjct: 93 CHPGVERIVQALDDMR-ELREG--PPAGQLRVCSTVGFGRKVVAPLLQGFRHANPDISVE 149 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD+ D + D D + R + ++ S +I +K++ + M AAP Y+ P S+ + Sbjct: 150 LLLDDGPTDFTTDRVDLSFRNGR-MEDSQVIAKKVIPMQMMLCAAPAYVARHGLPDSVDD 208 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + H + F + E W V R + P + L N ++Q + G G+A Sbjct: 209 IAGHRCVNFRLASGRVYE---WEFKVGGQLRKVAPP--AMLTFNDADLVLQAVLDGHGVA 263 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + Y V D+ LV + Y C+ +++ F +++ + R Sbjct: 264 QMAGYQVCDHLRAGTLVACLPQYAPDDRGHYLCFLSRQHLPARMRVFIDYMTERIR 319 >gi|308188122|ref|YP_003932253.1| hypothetical protein Pvag_2644 [Pantoea vagans C9-1] gi|308058632|gb|ADO10804.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea vagans C9-1] Length = 299 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 24/284 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++LR + V SGS T AA QL + S ISR +S LE+++ L +R R L LT Sbjct: 1 MKITLEELRAWVAVVDSGSITAAATQLAQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ +E + ++ PSG+LR+ +++ + +F YP Sbjct: 61 EEGQVFLEHARQILASVEQAEEQIALRREMPSGRLRVNAATPFMLHVIVPLVDDFRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ++L D+ ID+ D AIR+ + ++ S+L R L + + A+P YL P Sbjct: 121 LIQLELNTDDIMIDLLEQQTDIAIRIGE-LRDSTLRARLLGSSAIRLMASPAYLAKAGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQY 234 S+ +L +H I F P + W PI +P ++V L +I Q Sbjct: 180 QSVADLAQHQTIGFS--YPDTLN--VW------PIWQPDGDFMRVKPTLAASSGETIRQL 229 Query: 235 CVLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYF 271 + G GIA L D++ +++ P L D+ P VY+ Sbjct: 230 ALAGQGIARLSDFVSREDCAAGRLVPVLTAETRDLRLPVHAVYY 273 >gi|293394781|ref|ZP_06639072.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422732|gb|EFE95970.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 327 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/304 (25%), Positives = 146/304 (48%), Gaps = 29/304 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V +G+FT AA L S++ +S I LE+E+G+ L R R L+LT+ G + Sbjct: 35 RLAIFVAVVEAGNFTAAANTLGQSKAVVSFNIKQLESELGVSLLARSTRKLSLTDAGERF 94 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + E +++ SG LRI +T + G + + L F L+P ++IQ Sbjct: 95 YQRSLRLLQEAENVLDDVRRDHHGLSGTLRITSTPEYGAHAVVPALAAFAQLHPRLRIQH 154 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ D+ + D AIRL + S+ R L + A+P YL ++ +S+ +L Sbjct: 155 VSSSQHADLIAERFDVAIRLGRMADSNHRAAR-LDDFAILPVASPDYLAR-QQIVSLAQL 212 Query: 187 DKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + I L +W L V+ P + L +S +++ + + Sbjct: 213 AQAQWIVHSRL----ASPLSWQVVTPQRQAVLFDVETP------AALTADSATALLAFAL 262 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+G+ALLPD++ + L +++ D P+ ++Y YP K++AF +F+ Sbjct: 263 HGAGVALLPDWLARPALQRGQLCQLLPDHRFPTQSIYALYPNTRHVPEKVRAFIDFL--- 319 Query: 294 ARDW 297 R W Sbjct: 320 -RSW 322 >gi|91784452|ref|YP_559658.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91688406|gb|ABE31606.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 312 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + YPD+ I+L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQQRYPDVHIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ L + S L+ ++L + A A+P YL+ P + +L Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVLGSGIA 242 +H + ++ W T D P GE I+ QVN ++ G G+ Sbjct: 186 ARHTCL---QMVTPVFPTDKW--TFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 L+P Y + LV ++ + + +Y YP R ++ K R W Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQEMNLYALYPS-----------RQYLDAKIRTW 287 >gi|167824806|ref|ZP_02456277.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] Length = 300 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R++ LE +G+KL R R LTLT +GS Sbjct: 6 QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ + L Sbjct: 66 LEDCQRIINDIQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPGTLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 +HN + L + W + R+S ++ + + ++C+ G G+A Sbjct: 185 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289 >gi|300717358|ref|YP_003742161.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299063194|emb|CAX60314.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 311 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 124/267 (46%), Gaps = 16/267 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + ++ L F V SF+ A + +S S ISR I LE +G +LFYR+ R + TE Sbjct: 6 AINFRTLLFFIGVFDEQSFSAVARREGVSASMISRVILQLEDTLGQQLFYRNTRAVIPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + +L + E+ + S++PSG +RI + GQ + L E YP Sbjct: 66 AGRLFIDYARAMTEQLSEARTEMLDRSLEPSGLIRINAPVFFGQRHIAPWLTELSNRYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QI+L + ID D AD R+ + SS R T H H A+P Y++ +P Sbjct: 126 LQIELTQTDDYIDPHRDAADVIFRIGT-LTDSSFHARVFGTQHYHLVASPEYVEKHGQPA 184 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 S EL +H + + G P WL +P G P L N+ S++ + Sbjct: 185 SPAELSEHKCLVYRGFSGPN-----RWL--FRKPGGRWTHFPVNGLLTSNNAESLLTSAL 237 Query: 237 LGSGIALLPDYIVKDN---PNLVRIME 260 G G+ L PD+++ D+ LVR+ME Sbjct: 238 GGMGMVLFPDWLIGDSLKKGALVRVME 264 >gi|253687749|ref|YP_003016939.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754327|gb|ACT12403.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 314 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 3/192 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R F V +GSFT AA+ LH+S++++++ I LE + +KL +R R L +T G+ Sbjct: 4 FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E + L +++ P G+LR+ L + +L L F YPDIQ Sbjct: 64 VYYERVIRLLADMEDAENSLSSAAITPKGRLRVDVPSPLARLVLVPALPAFHARYPDIQF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D DC +R + I SLI R + + + Y AP Y++ P + Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-INDQSLIARHVGDLQIGVYVAPSYVERLGVPAHPR 182 Query: 185 ELDK--HNLITF 194 EL+ H ++ F Sbjct: 183 ELENTDHRIVGF 194 >gi|241766507|ref|ZP_04764373.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241363277|gb|EER58827.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 302 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 18/294 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +AR+G+ AA +L + ++++R+I LE +VG LF R A G LTE Sbjct: 1 MDWDNLRYFLELARAGTLVGAARRLAVDHTTVARRIQALEKQVGSALFAREAGGHRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESS--VKPS--GKLRIATTIDLGQNLLQGNLKEFLLL 118 G RV +E + ++ ++ V+ G RI TT G +L L F L Sbjct: 61 G----RVLLPQVEAMEAAFLAVENAAPGVRQGLHGLARIGTTEGFGNLILAPQLARFALE 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + I L+ + + +S AD I L +P + + ++ KL + Y A YL Sbjct: 117 HPGLGIDLLALPRLVHLSRREADIVISLERPARGAVVVV-KLTDYVLQLYGARSYLARHA 175 Query: 179 EPLSIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + +L H+ I++ D L K ++ + L P L+ S ++ + Sbjct: 176 PIRTADDLRGHSFISYVDDLLFSKELQILDELH-------RPTHFALRSTSIMAQYEAAR 228 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+A+LP ++ + +L ++ + + T + P K+ +++A +F+ Sbjct: 229 AGAGLAVLPAFVAAQDASLAPVLPGLARFTRTFWMSMPLENKHVARMQAVWSFL 282 >gi|171317480|ref|ZP_02906671.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171097376|gb|EDT42220.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 323 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ L F YPDI + L Sbjct: 67 EHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPDITLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPQQIADLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D E R++ + VN + + + G G+ Sbjct: 186 DHHAVNF--RASHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGLIQPTL 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V N +LV ++ D + YP + K++ F +++ Sbjct: 244 FMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWL 290 >gi|317401128|gb|EFV81781.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 293 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 140/286 (48%), Gaps = 28/286 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + + LR+F V +GS + AAE L + S +SR +S LE ++G+ L R R + LT Sbjct: 1 MALNSEALRLFLGVVDAGSMSAAAEMLGQTASGVSRGLSRLEEDLGVTLLNRTTRRMELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G+ ++ LE + ++ + +P+G+LR+ ++ + + + ++ +F YP Sbjct: 61 AEGAHFLHKARQIVQSLEEAEECMRIVNQQPAGRLRVDASVPVMLHCVVPHVADFRREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L +++ +D+ D A+R+ P+ S+L R + A+P YL P Sbjct: 121 AISLELTSNDRIVDLIEHRTDVALRM-GPLNDSTLHARPMRPRPRWLMASPEYLARRGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--------NWLATVDRPIGEPRISCLQVNSYLSIM 232 ++++L H L+ F P+ + + +LAT L +S + Sbjct: 180 RTVEDLAGHELLGFTQ--PESLNVWPLRHAGGSTYLAT----------PTLATSSGETQR 227 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT----PSFTVYF 271 + G GIA L D++ +D+ LVRIMED+ T P VY+ Sbjct: 228 HLALRGVGIACLSDFVSRDDLREGRLVRIMEDLHTDYLQPMHAVYY 273 >gi|288935124|ref|YP_003439183.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288889833|gb|ADC58151.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 303 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 20/280 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VVA+ +FT AA++L +SQS++S+ + LE ++GI+L R R + TE G + Sbjct: 7 NALAAFMVVAKEQNFTRAAKRLGVSQSALSQTVRVLEAQLGIRLLNRTTRRVVPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++ + L E KP+G +R+ T +++L + + YPDI+++ Sbjct: 67 LLASVGPQIEDIQRQLMVLSELRDKPAGTIRLTATEYAAESILWPAVSRLVKKYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D DI D D +R + I + R + M +P Y N P++ QE Sbjct: 127 ILTDYGLTDIVRDRFDAGVRPGETIAKDMIAVRIAPDMRMTVAGSPDYFSNRHVPITPQE 186 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 L +H I G L + W D R+ L N+ I++ + G Sbjct: 187 LTEHCCINLRLSGHGGL-------YAWEFEKDGRELNVRVDGQLVFNTGSMILKAALEGR 239 Query: 240 GIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYP 274 G+A LP+ YI +LVR++ED P + YP Sbjct: 240 GLAYLPEGQLEPYIASG--DLVRVLEDWCEPYSGYHLYYP 277 >gi|260424396|ref|YP_003212597.1| hypothetical protein Ctu_1p00210 [Cronobacter turicensis z3032] gi|260219204|emb|CBA34558.1| hypothetical protein Ctu_1p00210 [Cronobacter turicensis z3032] Length = 313 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 6/248 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + L F A + SFT AA L +S S++ + ++ LE ++G++LF R R ++LT +G Sbjct: 11 SFTALASFVRTAETLSFTQAARVLGISASAVGKNVARLEQKLGVRLFNRSTRSVSLTAEG 70 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L +L + EL ++ PSG+LRI+ + +G +LL L F YP+I Sbjct: 71 ATLLARCRPALEQLREAEAELTSATDTPSGRLRISLPV-IGYHLLMPFLPAFAARYPEID 129 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L ++ +++ + D AIR + S L L A+P YL P + Sbjct: 130 IELDFSDRLVNLVDEGFDVAIR-SGEMADSRLTATTLGHFRFVLCASPVYLAEHGAPQTP 188 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L KH I F P W T G P S L VN+ ++++ V G GI Sbjct: 189 DALKKHRCILF--RFPSTGLIQPWELTGLTMTGAP--SALTVNNIEAMIRAAVAGMGICY 244 Query: 244 LPDYIVKD 251 +PD+IV Sbjct: 245 VPDFIVNS 252 >gi|209544842|ref|YP_002277071.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532519|gb|ACI52456.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 300 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 129/289 (44%), Gaps = 9/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + F V +GSF+ AA L++ Q ++S+ I+ LE+ + + L R GLT TE G Sbjct: 4 YQAMATFVRVVETGSFSAAARHLNVGQPAVSKTIAQLESRLQVSLLIRSTHGLTPTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + + SG+LR++ + + L FL +P + + Sbjct: 64 SFYERARNAIQEADEAELAAKGAGAGLSGRLRVSAATTFARLHVIPKLPHFLAAHPHLDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +ILD++ ID+ + D ++R+ + S+ + RK+ T A P YL +P S Sbjct: 124 DIILDDRMIDLVAEGVDISLRMGM-LSDSTAVARKIATGGRSVLATPAYLARAGKPQSPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H I + P A V +G L+V++ + + G+ + Sbjct: 183 DLANHEAIIYSQQ-PNAWSFTRDGAAVSVSVG----GRLRVSAAEGLRAALLADMGLTIA 237 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D++ +N +VR++E P ++ +P T K + F F+ Sbjct: 238 SDWMFAPELENGAIVRVLEAWSLPPIGLWAVFPAGRMMTAKARRFAAFV 286 >gi|87200782|ref|YP_498039.1| LysR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87136463|gb|ABD27205.1| transcriptional regulator, LysR family [Novosphingobium aromaticivorans DSM 12444] Length = 301 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 131/295 (44%), Gaps = 25/295 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W LR+F +AR GS A +L SQ ++ R++ LE VG LF R + GLTLT++ Sbjct: 18 LEWSDLRIFLAIAREGSLGRAGRRLGQSQPTMGRRLRALEATVGAMLFQRSSSGLTLTDE 77 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + R + + + EL G +R++ + G+ +L + EF L+P + Sbjct: 78 GQVMLRHAEVMEGEALALERELTGRDGSLEGLIRVSCSDWFGRIMLAPVVAEFTRLHPAV 137 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK------- 175 ++++ D + + AD IR+ ++ R+L TI YA P + Sbjct: 138 VVEVLTDARVYSLVRREADLVIRIAG-FDEPEVVARRLTTIRYGVYAKPGTGRPVAGDGE 196 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 C PL + + FG+ M D WL RIS + NS Q C Sbjct: 197 GC--PLIVMD------TAFGE-----MPDVAWLMQT---FPNARISA-RSNSRDIQAQLC 239 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LG+G+A+LP + + R+ D P+ + + + L +L+AF + + Sbjct: 240 ALGAGVAVLPLPLGDATAQIGRLELDAEPPTRDTWIGFHKDLVRLPRLRAFIDLL 294 >gi|17544924|ref|NP_518326.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17427214|emb|CAD13733.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 300 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 14/277 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR GSFT AA +L ++QS++S+ +SGLET + I+L R R ++ T G + Sbjct: 7 NDLLAFVTVAREGSFTRAAAKLGVTQSALSQTVSGLETRLKIRLLTRTTRSVSPTAAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + ++E+ L E KP+G +RI + + L L L YPDI+++ Sbjct: 67 LLQAIGHRFDEIESELEALTELRDKPAGTVRITCGDQIIRTTLLPKLMPLLHEYPDIKLE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ DI D D +R + + R + M A+P Y P + ++ Sbjct: 127 LDINYGFRDIVADRFDAGVRFSGTVDKDMIAVRIGPDMRMAVVASPAYFAKHPAPKTPRD 186 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H I T+G L D R + L VN+ I V G G Sbjct: 187 LVHHQCINIRFPTYGGL------DVWEFERRGRKLKIRVDGQLVVNTTPHIAAAAVGGLG 240 Query: 241 IALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYP 274 +A LP+ + + LVR++ED P + YP Sbjct: 241 VAYLPEDEFWPHLEEGRLVRVLEDWCPPFSGYHLYYP 277 >gi|134297146|ref|YP_001120881.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140303|gb|ABO56046.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 319 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 141/295 (47%), Gaps = 14/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + ++ +PD+ + + Sbjct: 66 YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D A+R ++SSSL+ R++ T H+ A+P YL+ P +I + Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPDYLERRGTPQTIAD 185 Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN + + + + D + V+ L VN + + G+GIA Sbjct: 186 LAYHNYLRRESSASALDALVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LL +V D+ LV ++ D + P +Y Y + K+++F +F+ + Sbjct: 240 LLGTEVVGDDIESGRLVPLLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|262278744|ref|ZP_06056529.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259095|gb|EEY77828.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 311 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 20/296 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V SGSF+ A QL + S+ISR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESGSFSETARQLGTTPSAISRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPQGIIRLSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + S L+ RKL+ I A P YL+ P + Sbjct: 131 MLLEDRYVDLIDDEVDLALRITEQ-PSGGLMGRKLIDIDHLICATPEYLEKHGIPTHPHD 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-----G 240 L +++ I G+ I F G IS Y + L + G Sbjct: 190 LKQYDCIYLGEQISDSKWKFQQ--------GNKSISVTVRGRYAANHTGVRLSAALQHLG 241 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290 +A LP ++ + LV+++ D ++ ++ YP KL F ++ Sbjct: 242 VASLPYFVARHALQQQTLVQVLPDWDFKTYYSGGLWLLYPPTRHVPPKLSVFIQYL 297 >gi|116686287|ref|YP_839534.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116652002|gb|ABK12641.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 306 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 13/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F+ AA+ + ++ +SR I+ LE + I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + GKLRI + + +L L F+ +P+++I+LI Sbjct: 74 VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRAILGPRLDAFMDAHPELEIELIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188 + D+ MD D A+R +P ++SSLI RKL+ + AAP Y+ P ++L+ Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLEDR 192 Query: 189 -HNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H + F + P+ + F W R + + R L VN +++ C+ GSGIA Sbjct: 193 HHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + ++ D L+ + + + +Y YP K +AF +FI Sbjct: 250 LLGAEPLIADG-RLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFI 297 >gi|260770161|ref|ZP_05879094.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|260615499|gb|EEX40685.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|315182676|gb|ADT89589.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC 11218] Length = 297 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 122/255 (47%), Gaps = 19/255 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S+ D LR F VAR GSF AA+ L + S++SR+I LE ++ ++L R A + LT Sbjct: 4 SYSLDDLRCFCAVARCGSFKDAAQSLGMPLSTLSRRIRQLEADLQLRLLNRDAHRVVLTS 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ ++ +L+ +L +P GK+RI+ I+ G L+ +FLL YPD Sbjct: 64 TGEQYFQRSAALFDELDDIDEDLHRDKHQPQGKIRISAPINAGSQFLRTIFYDFLLQYPD 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKNCREP 180 IQ+ L N IDI + D R+ P+ + I R L IH A P Y + P Sbjct: 124 IQLDLSFSNSLIDIEAEGMDVVFRVGSPV-VDNWIARPLKHIHFILCAHPDYDISGITTP 182 Query: 181 LSIQELDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 ++L H I ++P + E+F++ P R L+V+ L + Sbjct: 183 ---EQLCGHPTIICRPMVPWQLVNQENGEEFDY-----HPQKGVR---LEVDEILMLTHA 231 Query: 235 CVLGSGIALLPDYIV 249 G GI +PDY Sbjct: 232 VKTGIGIGYVPDYFA 246 >gi|260432179|ref|ZP_05786150.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] gi|260416007|gb|EEX09266.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] Length = 295 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/275 (28%), Positives = 127/275 (46%), Gaps = 12/275 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD L F +V +G FT AA +L +S S +SRQ++ LE +G+KL R R + LT+ G Sbjct: 4 WDGLEEFLMVVETGGFTAAARRLGVSASHVSRQVARLEDRLGVKLLARSTRVVRLTDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H + + LE + +G++R++ + + L F L+P + + Sbjct: 64 DYHARVAGLVAGLEEANQSAAGDRAQIAGRIRVSAAGPFAEQFVAPALARFASLHPKLSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + +++ ++++ + D AIR + S LI R+L T M AA YL P Sbjct: 124 TIDFNSRLLNLTEEGFDFAIRY-GTLTESGLIARRLATRRMVCVAARGYLDRHGRPTHPA 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 +L +H LIT D +F + D PI E R+ Q N+ +I+ G G+ Sbjct: 183 DLRQHQCLITNNDRW-----EFRDPGSGD-PI-EVRVHGRWQANNPHAILSAARQGLGVM 235 Query: 243 LLPDYIV--KDNPNLVRIMEDVITPSFTVYFCYPE 275 P+ + K P L I++ PS + YPE Sbjct: 236 YAPEIFLGAKRPPELEPILQGFEDPSRASWIVYPE 270 >gi|120611274|ref|YP_970952.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589738|gb|ABM33178.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 295 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 17/293 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ LR F +AR+G+ AA + + ++++R+I LE ++G LF R A G LTE Sbjct: 1 MDWENLRYFLELARTGTLAAAARRTGVEHTTVARRIQALEKQMGESLFAREAGGHRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQE---SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G L +ET + ++ + + P+G +R+ T G +L +L L Y Sbjct: 61 GRHL----LPAVEAMETAVLGVERVRPAGIGPAGLVRVGATEGFGTQVLAPHLARLTLQY 116 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + + L+ + + +S AD I L +P + + ++ KL + Y YL Sbjct: 117 PHLSVDLLALPRMLHLSRREADIVISLERPTRGAVIVS-KLADYTLRLYGQRDYLARRPA 175 Query: 180 PLSIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++L H +++ D L K ++ + L +R + S + + Sbjct: 176 IARREDLRHHAFVSYVDDLLFTKELQFLDQLVPPER-------FAFRSTSVAAQYEAVRA 228 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+ +LP ++ +P L R++ D + T + P K + +A +F+ Sbjct: 229 GAGLGVLPAFLADSDPLLERVLPDEARFTRTFWMSMPAEAKYQARTQAVWDFL 281 >gi|90426366|ref|YP_534736.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108380|gb|ABD90417.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 297 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 6/271 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA SFT AA +L +SQS++S I LE +GI+L R R + TE G +L Sbjct: 10 LSAFVAVAEERSFTRAAAKLGVSQSALSHTIRELEARLGIRLLTRTTRSVAPTEAGERLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + +++ L + KP+G +RI + +L L L YP+I++++ Sbjct: 70 RTVAPRLAEIDAELAGLSDLREKPAGSIRITAGEHAAETVLWPALARLLKDYPEIKVEIC 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 DN DI + D +R + + + R + M A AAP Y P Q+L Sbjct: 130 SDNTFTDIVAERFDAGVRFGEQVSKDMIALRIAPDMRMAAIAAPSYFAQRPRPKRPQDLT 189 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H I +P + W R + L N+ +Q + G GIA +P+ Sbjct: 190 DHACINI--RLPTYNSLYAWEFEKAGRELKVRVEGQLIFNTLPLALQAALDGFGIAFMPE 247 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 + + LVR++ D P + YP Sbjct: 248 DLATSHLAAGRLVRVLGDWCPPFPGYHLYYP 278 >gi|330876977|gb|EGH11126.1| LysR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 301 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 12/295 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + +G W +P+ ++ N+ + + G GI Sbjct: 183 DLHSHECLPYGH-----SRHVQWRFQGSGKPVSLNVSGRMRANNGELLKDAALAGLGITY 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP +IV D +LVR+++++ T+ YP+ + + ++AF FL+ R Sbjct: 238 LPTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRLVQAF--IAFLRER 290 >gi|220922929|ref|YP_002498231.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947536|gb|ACL57928.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 306 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 140/297 (47%), Gaps = 10/297 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L VF V +G F+ AA +L++S + +S+ + LE +G +L R R ++LTE G Sbjct: 6 SLTVFGRVVEAGGFSAAARRLNMSVTMVSKHVQALEDRLGARLLNRTTRKVSLTEVGQAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +S++ +L+ P G+LR+ T + + + L+E+L YP + + L Sbjct: 66 YERSSQILAELDEADRIASALHATPRGRLRLHTAGHISR-FMAPVLREYLARYPAVTVDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ D D AIR P S LI R+L AP+YL P +L Sbjct: 125 TVGDRMVDLIEDGYDLAIRTTPP-PDSGLIVRRLTPWRHVLTCAPNYLDAHPAPFQPGDL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN + + P +++++ ++ P + NS + + GSG+ L P Sbjct: 184 AHHNCLRYA-FYPYG-DEWHFESSDGGPTAVKVTGNMVSNSADLLRLLALDGSGVFLAPT 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 ++V ++ +LVR++ + F + YP + K+++F + + F + R W Sbjct: 242 FLVGEDVEAGSLVRLLPEYKPVEFAINAIYPHRRHLSTKVRSFLDLLSERFAEHRHW 298 >gi|114771037|ref|ZP_01448477.1| Transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] gi|114548319|gb|EAU51205.1| Transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] Length = 305 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 10/272 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F VARSGS + A+ L + +++ R+I+ LE + KLF + RG LT+ Sbjct: 2 LNWDDYRIFIDVARSGSLSAASISLKIDAATVGRRITRLENALNSKLFNKLPRGYQLTQA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L + + + LQ++S SG RI L +L + + +P++ Sbjct: 62 GNDLKEHIENIERTEKIARGSLQKASESISGNFRIGAPDGLSNFVLPSVISKIQNKHPNL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQ++ + ++S AD AI + P + + +K+V ++H A YL+ S Sbjct: 122 NIQILSLPRVFNLSRREADLAIMVTPP-KKGRFVTKKIVNYNLHLAAKKTYLEKFPNIKS 180 Query: 183 IQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L HN+I + IP + D ++L+ V P P +S NS MQ LG G Sbjct: 181 KTDLKNHNIIGY---IPDLIFDPTLDYLSEVT-PNRTPNLSS---NSVAVQMQMLNLGIG 233 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272 I L D+ + P+++ I+++ I Y Sbjct: 234 IGLAHDFALAHYPDIIPILKNKINQERGFYMV 265 >gi|58040534|ref|YP_192498.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58002948|gb|AAW61842.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 305 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 148/305 (48%), Gaps = 30/305 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++++F V SGSF+ AA + S++S+ I +E +G++L R R L++T Sbjct: 1 MDNRFGEMKIFLRVVESGSFSEAARLSMTTPSTVSKLIGRVENRLGVRLVERSTRRLSVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G + + +L+ + L + +V+ +G +RI ++ G L+ L F YP Sbjct: 61 PEGLAYYDRAQALIAELDDMEGFLSKKTVQLTGTVRINASVAFGTLALEPLLPPFWDAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI + L L ++ D+ +D D A R+ K +Q SSL R L ++ AP YL+ P Sbjct: 121 DIVVDLSLSDEMTDLYLDRTDIAFRVGK-LQDSSLTARHLGSVPRLIVGAPDYLERFGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT----------VDRPIGEPRISCLQVNSYLS 230 ++ +L+ H + F +F A VDR + P L N+ + Sbjct: 180 ETVDDLEHHRCLGF---------NFRRAAPVWPLQERGRIVDRIVQGP----LLANNGET 226 Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKA 285 + + + G+G+A L +Y V+++ R++E V+T S T ++ Y + +++ Sbjct: 227 VRRAAIRGAGLARLAEYHVREDLAAGRLVE-VLTESGTRDEEEIHALYQGGKQVPQRIRV 285 Query: 286 FRNFI 290 F +F+ Sbjct: 286 FLDFV 290 >gi|312959458|ref|ZP_07773975.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311286175|gb|EFQ64739.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 302 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D L F V+ +GSFT AA+QL S+ +S++IS LE + + L +R R L+LT G Sbjct: 3 EMDDLAAFAVLIEAGSFTVAAQQLGCSKGQLSKRISQLEAQFCVVLLHRTTRRLSLTAAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + +++ + L +G +R+ + LG+ G L EF YP +Q Sbjct: 63 AALLPQAQALVAQVDRARQALARLKDDLTGPVRMTVPVSLGETFFDGLLLEFSKQYPQVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L L+N D++ D D +R + + L+ + L+ H A+P YL+ EP + Sbjct: 123 IELELNNSYRDLARDGFDLGVRA-GALDNERLVAKPLLAWHEMTCASPAYLEQHGEPQTP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 +L H + L WL + ++S N Y + + ++G+GIA Sbjct: 182 ADLAAHRCL----LNSHYSGREEWLYHQRHELLRVKVSGTFASNHYNLLKKAALVGAGIA 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 LP Y++ + L ++ D T S +Y +P Sbjct: 238 RLPSYLLPAELADGRLRCLLRDYQTRSLPMYLVHP 272 >gi|288961457|ref|YP_003451796.1| hypothetical protein AZL_b05890 [Azospirillum sp. B510] gi|288913765|dbj|BAI75252.1| hypothetical protein AZL_b05890 [Azospirillum sp. B510] Length = 327 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V + SF+ AAE L L ++S++ + LE +G++L R R L+LT G+ Sbjct: 7 MRVFIRVVEANSFSKAAETLGLPRASVTTTVQNLEAALGVRLLQRTTRKLSLTLDGAAYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + +++ + + P G+LR+ +G+ ++ ++ EF YPDI + L Sbjct: 67 EGASRILSEIDEIESTFTSARKTPRGRLRVDMPGSIGRLVIIPSIHEFHAKYPDIDLMLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DC +R+ + + SSL+ R++ I A+P YL EP +I++L+ Sbjct: 127 LGDRAVDLIQEGVDCVVRVGE-LADSSLLARRIGAIQQITCASPAYLAEHGEPRTIEDLE 185 Query: 188 KHNLITF 194 +H + + Sbjct: 186 RHIAVNY 192 >gi|331656361|ref|ZP_08357323.1| LysR-family transcriptional regulator [Escherichia coli TA206] gi|331054609|gb|EGI26618.1| LysR-family transcriptional regulator [Escherichia coli TA206] Length = 288 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 7/269 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 ++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G ++ Sbjct: 1 QIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAGERIIA 60 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 +LE L + + PSG +R++ ++L+ LK FL YP+I ++L++ Sbjct: 61 CLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEINVELVV 120 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 DN +DI D IRL + + + R + M AP Y P + EL Sbjct: 121 DNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETPHELQN 180 Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I +P ++W +P+ L + + + G GIA +P+ Sbjct: 181 HRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIACVPED 238 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCY 273 +V+ ++ L++++++ P+F Y+ Y Sbjct: 239 MVQEYIESGKLIQVLQE-WCPTFPGYYLY 266 >gi|299771720|ref|YP_003733746.1| transcriptional regulator [Acinetobacter sp. DR1] gi|298701808|gb|ADI92373.1| transcriptional regulator [Acinetobacter sp. DR1] Length = 298 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 138/294 (46%), Gaps = 18/294 (6%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ F++ VA+ SF+ A QL L +S+++ I LET G++LF+R R ++LT+ Sbjct: 2 DRLQQFFIFSEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + E + +Q G L+I+ + ++ L +F YPDI Sbjct: 62 GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYSRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + D+ DC +R+ + + SSSLI R + + M A+PHYL+ P Sbjct: 122 HLQLNSSDDMTDLIEKGIDCVVRVGE-LDSSSLIARLIGHLVMVNCASPHYLEQYGIPEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L +H LI + + + F N +D S L VN+ + + G Sbjct: 181 LGDLSQHKLINYAGAVGEKQGIFLYQNGTVMID--------SALSVNNTEAYVAAACAGL 232 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI LP Y V+D +LV ++ S + YP +L+ F N++ Sbjct: 233 GIIQLPYYDVQDKIEQGSLVEVLSAHTAQSLPLNILYPNRSYIPKRLEIFMNWV 286 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074714|gb|ADJ64113.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 6/210 (2%) Query: 2 SFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 SFD + +F A GSFT AAE L L+ +S+SR IS LE+ +G++LF R R + Sbjct: 3 SFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIR 62 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 LT +G + ++ + L PSG LRI+ L L F Sbjct: 63 LTREGELYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQA 122 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP I+++L + N+ +D + D AIRL P S LI L + +AAP YL Sbjct: 123 YPQIEVELSIANRVVDFVEEGYDLAIRLGVP-PDSRLIAHTLEEATLGLFAAPAYLARRG 181 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWL 208 +P SI EL++H+ I F ++P W+ Sbjct: 182 QPRSIAELEQHDCIQF--ILPSSGRAMPWI 209 >gi|300717319|ref|YP_003742122.1| regulatory protein, LysR-family [Erwinia billingiae Eb661] gi|299063155|emb|CAX60275.1| Regulatory protein, LysR-family [Erwinia billingiae Eb661] Length = 300 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 144/288 (50%), Gaps = 18/288 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SK 65 VF VA + SF A L LS S++ + ++ LE ++G++LF+R R +TLT +G ++ Sbjct: 9 VFVQVAETRSFVSAGRLLGLSASAVGKNVARLEEKLGVRLFHRSTRSITLTAEGLLFLAR 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R+ +E+ E +EL ++ PSG+LRI ++ L +L+ L +F+ YP+I + Sbjct: 69 CRRIIAEI----EAAHLELSQARSNPSGRLRI--SLPLVSSLMLPVLGDFMRQYPEISLD 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D IR+ +P S L R+L A+P YL P S + Sbjct: 123 LDFTDNLVDVIQEGFDAVIRMGEP-ADSRLSARRLGYFGSVLVASPAYLLEKGLPQSPDD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+ + + +E NW + + P + N+ + + + + G GIA LP Sbjct: 182 LLQHSCLHYRFSHTGKLE--NWPLRLAGHLTLP--VSMVCNNIETRVCFALRGLGIAWLP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+ V+ LV ++++ I T + +P + + K++ +F+ Sbjct: 238 DFAVRALIAEGELVSVLDEFIDWQGTFHILWPASQHASPKIRVLVDFL 285 >gi|226943787|ref|YP_002798860.1| transcriptional regulator [Azotobacter vinelandii DJ] gi|226718714|gb|ACO77885.1| transcriptional regulator [Azotobacter vinelandii DJ] Length = 300 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++VF V +GSF+ AA QL S S+IS+ + +E +G++LF R R L LT++G Sbjct: 7 EMQVFVRVVETGSFSEAARQLLTSPSTISKLVLRIEQRLGVRLFERSTRRLALTDEGRLY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + +L+ + L + G +R+ ++ G ++ L F +PDI + L Sbjct: 67 YERSQALLAELDDIEQALARGANHARGTVRVNASVGFGTWGIEPLLPAFWEAHPDILVDL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ ++ D A R+ + S+L RK+ AAP YL+ P I++L Sbjct: 127 SLSDDLVDLYLERTDIAFRV-GALADSTLRARKIGVAWRRMVAAPAYLERHGLPARIEDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 D+HN + F + W L R + L N+ ++ + + G+G+A L Sbjct: 186 DRHNCLGFNFRRASPV----WPLRQGGRIVDRMVRGNLLANNGETVRRLAIAGAGVARLA 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+ V + LV ++ + V+ YP +++ F +F+ Sbjct: 242 DFHVDHDIAAGRLVEVLAESGHDCEEVHALYPGGRHPPQRVRVFLDFM 289 >gi|327188228|gb|EGE55448.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 306 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 6/245 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V + G F+ AA L ++ S++S+ I+ LE +G +L R R LTLTE+G Sbjct: 11 EMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAY 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H ++ +L +V+ G+LRI TTI G + + +F+ PD+ + L Sbjct: 71 HHAALKILQELNDADQAAAGGAVR--GRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDL 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D AIR+ + S LI RKL A+ YL C P++ +L Sbjct: 129 SFTDGIVDLVAEKTDVAIRMGD-LPDSGLIARKLGQSRRVVCASADYLVRCGFPVNPADL 187 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + H+ +TF + F + + +P + VN+ ++ Q + G+GIA + Sbjct: 188 EHHDCLTFNFRRARPSWPFRCGG---QDVAQPVKGSIVVNNGETMKQMALAGAGIARVGL 244 Query: 247 YIVKD 251 + V D Sbjct: 245 FHVAD 249 >gi|307941746|ref|ZP_07657101.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307775354|gb|EFO34560.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 316 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 142/290 (48%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + A +++LS + +S++I LE ++G +L R R + +TE G + Sbjct: 9 MEIFARVVSAGSMSAAGREMNLSPAVVSKRIRRLEDKLGTRLLQRTTRQIAMTEAGQGFY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + + S K G L++AT+ G+ + ++++FL +PD+ + L Sbjct: 69 ERVIAILASVEEAEEFVSQGSAKARGTLKVATSTSFGRLHIAPHIQKFLDAHPDMSVNLD 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 L++ +DI + D AIR+ + + SSL+ R+L +H A+P YL EP SI +L Sbjct: 129 LNDDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPVHRILVASPDYLAKHGEPHSISDLA 187 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + H + + P + + + TV + ++ NS + + + G GIAL Sbjct: 188 ESHLTLAAANQGPWKLVGPHGIETVK------TTAPVKTNSSEVVRECLLAGVGIALRST 241 Query: 247 YIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 + V P L ++ P + +Y YP K++AF +F+ Sbjct: 242 WDV--GPELRDGKLRMVLPDYRASRDVGLYAVYPSRQFLPVKVRAFIDFL 289 >gi|254452613|ref|ZP_05066050.1| transcriptional regulatory protein [Octadecabacter antarcticus 238] gi|198267019|gb|EDY91289.1| transcriptional regulatory protein [Octadecabacter antarcticus 238] Length = 294 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 3/191 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR+ +F+ AA +L + S++SR+I+ LE +G +L R R + LTE G+ Sbjct: 7 FVEVARTRNFSQAAARLGIPASTLSRRIAELEAGLGTQLLVRTTRRVDLTEAGALFLSRC 66 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 E+ + EL E + +P G LRI+ T D L + EF +P+I + L L+ Sbjct: 67 EEIVEAARGARAELSELTRRPRGTLRISVTPDFATTFLAPVIVEFCERHPEIDLHLDLNP 126 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + DI + D AIR+ P + L RKL+T YA+P YL PL+ +L H Sbjct: 127 RRADIMAEGVDVAIRIGMP-REPYLYARKLITARRGLYASPAYLAAAGTPLTPLDLAVHR 185 Query: 191 LITF--GDLIP 199 ++ G+ +P Sbjct: 186 CLSVSSGEPLP 196 >gi|293395380|ref|ZP_06639664.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422064|gb|EFE95309.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 318 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 103/191 (53%), Gaps = 3/191 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V SGSF+ AA +L + S+ISR +S LE + ++L +R R L L+EQG + Sbjct: 17 EMAVFAQVVESGSFSAAARRLGATPSAISRSVSKLEQALNLRLLHRTTRKLRLSEQGEAV 76 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + S +P G + ++ +G +L ++ EFL YP + ++L Sbjct: 77 FQHCQQMLAAANAAMTVCGQGSAEPEGLVSVSVPKAVGHFVLHPHMPEFLRRYPQVDVRL 136 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+++ +D+ D D A+R+ +P S LI R+L+T+ A PHYL P Q+ Sbjct: 137 RLEDRYMDLIEDRVDLALRITDRP--SPGLIGRQLMTVDHLLCATPHYLAQHGTPQQPQD 194 Query: 186 LDKHNLITFGD 196 L +H+ I G+ Sbjct: 195 LAQHSCIYLGE 205 >gi|225077091|ref|ZP_03720290.1| hypothetical protein NEIFLAOT_02144 [Neisseria flavescens NRL30031/H210] gi|224951648|gb|EEG32857.1| hypothetical protein NEIFLAOT_02144 [Neisseria flavescens NRL30031/H210] Length = 296 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SGSFT AA+QL +S + S+ ++ LE + KL +R++R L LTE G + + Sbjct: 7 LKVFRQVVQSGSFTRAADQLDISTAMASKHVNHLENTIQAKLLHRNSRNLHLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+T + + P G LR+ + + L E+ YP + + L+ Sbjct: 67 RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ ID+ + D A+R+ K S SLI + L I AAP YL P + + + Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H I + + AT ++ I ++ ++ L I + G+GI P + Sbjct: 186 QHQAI-LPSYTNQQDREITHRATAEKAILHLS-PVIRSDNTLMIRELIKAGAGIGYQPLW 243 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ + L++++ D + + Y + + K+++F +F+ Sbjct: 244 AVQQELKDGTLIQLLPDYTIWADQLNATYVDRAFLSAKVRSFIDFL 289 >gi|86360342|ref|YP_472230.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284444|gb|ABC93503.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 299 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 72/299 (24%), Positives = 144/299 (48%), Gaps = 18/299 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF VA SFT AA++L +S + S+ + LE+ +G +L R +R ++LTE G Sbjct: 7 LRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLESRLGTRLLNRTSRHVSLTETGRLYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T E+ +L+ + + + +V P G L+++ + + L + YPD+ + L Sbjct: 67 NQTREMLERLDEVEDAISKVTVAPRGTLKLSAPVWAATSYFTDMLAAYNRRYPDVCLDLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +++ + D A+R + L+ R L + A+P YL+ P ++ EL Sbjct: 127 LSGRLVNLVDEGFDLALRATSQDRLDPGLVARLLTNVQFRLMASPDYLERTGRPRNVGEL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 + H L+ + + +F +++ P G +I + +Q ++ + + G G+A Sbjct: 187 NGHALLRYSGV------NFGESMSLEGPDGPHKITFRTAMQSDNETILHLAALRGMGLAF 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP ++ + + R+ +++ P+ T+Y YP + K++ F +F+ R+ Sbjct: 241 LPTWMAEQDIEAGRL--EIVLPAIMLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297 >gi|269967857|ref|ZP_06181901.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827562|gb|EEZ81852.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 309 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 143/274 (52%), Gaps = 8/274 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +KL + V+++GSF AA+ +++ +S +S+ I LE +G++L R R L+LT+ G + Sbjct: 5 NKLHLLLEVSKAGSFAKAADGMNIDRSVLSKHIKQLEEHLGVRLLNRTTRSLSLTQVGKQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ L+ TQ + +PSGK+RI+++ G+ LQ ++++FL YP ++ Sbjct: 65 IVEKADQISQLLDDTQQIAENFQTEPSGKVRISSSTLFGKLYLQPSIEKFLHKYPKASVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD+ +D+ D A R+ P++ SS++ RKL A+ + ++ P + E Sbjct: 125 LMLDDLHVDVIRSNFDIAFRI-GPMRDSSMVARKLAKNTTAIIASRNLIEKHGNPETPDE 183 Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L K I + G+ I ++ ++ + D P VN I++ G G AL Sbjct: 184 LVKLPFIIYSNGNFIVDKLKFYDKEKS-DGLDTYPISGSYMVNEAELIIKSVKSGLGAAL 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSF-TVYFCY 273 + +++ +N NLV+++ + T F +Y Y Sbjct: 243 IGQFMLPNNLESSNLVQLLPEYETQDFGDIYAMY 276 >gi|330969856|gb|EGH69922.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S I + I LE +G++LF+R R + LT +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +L+ ++EL + P G+LRI ++ L L+ + F+ YPDI++ + Sbjct: 69 CRRILSELDAAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIINFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ +++ + + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHGIPRHPGDLSQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + P +W + R G + Q N+ ++ G GIA LPD Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ N L+ +++D + T +P + + +L+ F +F+ Sbjct: 242 FMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288 >gi|163758928|ref|ZP_02166015.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162284218|gb|EDQ34502.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 299 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE ++G L R R +LTE G Sbjct: 6 RIRAFIDVVEAEGFSAAARKVGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R S++ +++ ++E S GK+RI+ + +L +F +PD+ +++ Sbjct: 66 YRSASDILKEIDNLADLVREGSKDLKGKIRISAPRTFVDAAVGQSLIDFAAAHPDVTLEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 I D++ +D+ + D AIR+ + ++ S LI RKL T + A A+P +L+ +L Sbjct: 126 ISDDRFVDLVEEGYDLAIRITR-LEDSGLIARKLSTFSLIACASPEFLEKTGPITHPSQL 184 Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 I T G + NW D P G +VNS L+ M+ G G Sbjct: 185 ADVPCIIDTNGRFLN------NW--RFDNPDGSSASVTVSGSFEVNSPLAAMRAAEAGMG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +LPD++ ++ L I+ + + +Y YP K++AF +F+ Sbjct: 237 VTILPDFVFREREKTGTLKPILTEFLPTDRGIYAIYPHRRYLPAKVRAFVDFL 289 >gi|304396464|ref|ZP_07378345.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304355973|gb|EFM20339.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 305 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 8/250 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD L V+A GSFT AAE+L +S++++S++I LE G+ L R R + LT G Sbjct: 10 WDHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEEMAGVLLVQRTTRSVRLTSAGE 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 KL E + ++E + +++++ G +R+ + + L + EFL YP +++ Sbjct: 70 KLVEELREPFSRIEQSFFSVRDTAGPVRGLVRMTAPVAFARQQLVPIIGEFLRDYPQVRL 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL + ++ + +S + D AIR + + + L A+P YL P S Q Sbjct: 130 QLDVTDRIVSLSSEGFDLAIRHSDTLPETH-VALPLCDTRTLLVASPAYLSLQGVPQSPQ 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 +L +HN + + P+ +E W T D + RI N+ SI + G GI Sbjct: 189 DLKQHNCLYY----PRGIESPRWRFETTTDSEQVQVRIQGSFATNNSESIRDAALQGLGI 244 Query: 242 ALLPDYIVKD 251 A+LPD+ ++ Sbjct: 245 AMLPDFSARE 254 >gi|284920084|emb|CBG33143.1| LysR-family transcriptional regulator [Escherichia coli 042] Length = 294 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 133/282 (47%), Gaps = 21/282 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ T+ + L+ L PSG +RI + L NL F YPDI+ Sbjct: 66 EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPNLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235 +L H I F D + W D RP G+ +S +SY+ + Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHRPEGQWALS----DSYME-AEAA 235 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LG G+A +P +V D+ L+R+++ ++ YP Sbjct: 236 RLGLGLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277 >gi|146313550|ref|YP_001178624.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145320426|gb|ABP62573.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 299 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 11/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L L + S+SRQI LE +G +L +R R ++LT+ G + Sbjct: 7 MQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENLLGTQLLHRTTRRVSLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SG+LR+ + + +NL+ L FL YP I+++L Sbjct: 67 ERAKDLLANLDELDGLFQSDPTSISGRLRVDMPVGVARNLVIPKLPSFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + + A+P YL P ++ +L Sbjct: 127 SSDRLVDVIREGFDCVVRV-GTLKDSGLIARTLGKLSIINCASPDYLARFGYPENLDDLA 185 Query: 188 KHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H +I + P+ E FN T+ G L VNS + C+ G GI + Sbjct: 186 SHAVIHYAVNLGTRPQGFEFFNGDTTLWVKTG----GILTVNSTETYHAACLAGLGIIQV 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P V++ +V I+ V YP Sbjct: 242 PRVGVREALRAKKMVEILPQYRAEPMPVSLIYP 274 >gi|50121772|ref|YP_050939.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49612298|emb|CAG75748.1| lLysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 315 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 128/276 (46%), Gaps = 17/276 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GS T AA +L +S++ +R I+ LE G++L +R +R L LT GS++ Sbjct: 7 MQVFVDVVELGSLTAAANKLDISRAMATRYIASLEKSFGVRLLHRSSRSLGLTSAGSEIL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + L+ S +P+G +R+A++I GQ+ L ++ + YP + ++++ Sbjct: 67 SYCRQILALNDDIGVALESKSQEPNGLIRVASSISFGQSYLADAMRRYASQYPKVAVEMV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + I++ D AI + + S+I R+L AAP Y+ P +L Sbjct: 127 LKDASINLVEQRIDLAIHVGNKLD-PSVISRQLTRCASVVCAAPDYMARNGTPQRPDDLR 185 Query: 188 KHNLI---TFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +HN + FG++ P + + VD N + ++ + G G Sbjct: 186 QHNCLHHTRFGNVWRFQRPSAKGENLVMDEVD------VTGNFAANDSMVLLHAALAGGG 239 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 I LP + LVR++ D + P VY Y Sbjct: 240 IVHLPAFTTDPYLRTGALVRVLTDYLLPELGVYALY 275 >gi|309782093|ref|ZP_07676823.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308919159|gb|EFP64826.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 300 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 16/294 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS + AAE L +S++ ++R ++ +E G +L +R R + LT G Sbjct: 9 VFVAIVERGSLSAAAEALDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + + P G LRIA L Q L + +L YP + L++D Sbjct: 69 CRQMLEIASQMAVADGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ ++ + D A+R+ + +LI R L AAP YL P +Q+L H Sbjct: 129 NRTTNLVEERIDLAVRITNDLD-PNLIARPLGMCESVVVAAPSYLAAHGTPRRVQDLAVH 187 Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 N +T FG + K E A D P+G L N + ++ G+GIAL P Sbjct: 188 NCLTYTYFGKSLWKFTEAKTG-APSDVPVG----GNLSANESMVLLAAAREGAGIALQPV 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + + LVR++ D + + ++ Y + L+A +F+ DW Sbjct: 243 FAAAPLIASGQLVRLLPDYLPQALGIHGVYSSRRQMPAALRAMLDFLV----DW 292 >gi|170721994|ref|YP_001749682.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169759997|gb|ACA73313.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 306 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + GSF+ A QL + +S+++S LE +GI+L R R L T++G + Sbjct: 10 DELATLLALHEQGSFSAAGRQLARHPTVLSKRLSALEQRLGIRLVERTTRQLRFTDEGER 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + + E E + G+LR+A +G+ L G L +F+L +P + ++ Sbjct: 70 LVVRVREASRLITEAEQEATEGAASVRGRLRLALPAAMGRRWLSGMLADFVLAHPQVTLE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +D+ + D AIR+ + + L+ KL A+P YL EP ++ Sbjct: 130 AEYADRFVDLVGEGFDAAIRI-GELADNRLVASKLCDHVRILCASPDYLARQGEPAKPED 188 Query: 186 LDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 L KHN + F L P+ W T +IS L+ N ++++ G GI Sbjct: 189 LSKHNCLGFSGLRSFPE------WRLTRGNHQVSVKISGSLRGNDNEALLEAARRGVGIL 242 Query: 243 LLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+++ ++ L+R++ + + +Y P A NT L AF+ ++ Sbjct: 243 AGGDWLMGEDLAAGRLLRVLAQWELDAAAGIYLVRPSARLNTASLGAFKAWV 294 >gi|313669233|ref|YP_004049517.1| LysR-family transcriptional regulator [Neisseria lactamica ST-640] gi|313006695|emb|CBN88163.1| probable LysR-family transcriptional regulator [Neisseria lactamica 020-06] Length = 303 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 20/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSRTL-SPSLIARPLAEIEFALLASPDFLRRNGVPKTPEEVA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEP-RIS---CLQVNSYLSIMQYCVLGSG 240 +P + + D + G+ R+ ++ ++ L + + G+ Sbjct: 186 G---------LPAVLPTYTNRQQPDLTRKSDGKKYRLELNPVIRTDNTLMMREMIKAGAC 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I P + V+ + +LVR++ + TP+ + Y + + K+++F +F+ Sbjct: 237 IGYQPFWAVEHDLRCGSLVRLLPEYATPTVRLNAVYADRAFLSAKVRSFIDFL 289 >gi|325921975|ref|ZP_08183780.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325547525|gb|EGD18574.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 338 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 8 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L EFL YP ++ Sbjct: 68 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLTKYPKVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + VR E +V+ P +++ C+ G L A R FI Sbjct: 240 DGFGITMLPETVCA---QAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293 >gi|56460399|ref|YP_155680.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56179409|gb|AAV82131.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR] Length = 303 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 20/299 (6%) Query: 1 MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 MSF D +F V GS + A+ +L L +S+ISR+++ LE E G +LF+R GL L Sbjct: 1 MSFPDVTNYYLFAQVMACGSISAASRELGLPKSTISRKMALLEQEQGTRLFHRSRSGLKL 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T+ G + + E+ Q Q KP GK+ I+ L Q+LL L EF+ LY Sbjct: 61 TDVGREFLVHCERLVSAAESAQQVTQRLLDKPRGKVEISAPYALSQSLLVQVLPEFMSLY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNC 177 P+++IQL++ N+ +++ + D A+R+RK I+ SSLI R + Y AP + + Sbjct: 121 PEVEIQLVVTNRPVNLIEEGIDIALRVRKNIEDSSLIARPISQAPQTLYIAPDLINQNSI 180 Query: 178 REP---LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 EP L+ + L H T G + + + +PR L + + + + Sbjct: 181 TEPEDLLTFEHLSMH--YTNGRYGYELIHSSGLQKNIRI---KPR---LITDDMIVLREA 232 Query: 235 CVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + GI LP+Y+ D N LV ++ D P ++ Y G L A R I Sbjct: 233 AIKKLGIVALPNYLCNDAVNSGELVPVLTDWHLPIGIMHITYSH---RRGILPAVRVLI 288 >gi|187734166|ref|YP_001882210.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94] gi|187431158|gb|ACD10432.1| transcriptional regulator, LysR family [Shigella boydii CDC 3083-94] gi|332095848|gb|EGJ00856.1| hypothetical protein SB359474_1698 [Shigella boydii 3594-74] Length = 299 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|332975624|gb|EGK12513.1| LysR family transcriptional regulator [Psychrobacter sp. 1501(2011)] Length = 302 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 136/273 (49%), Gaps = 6/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V +GS T AAEQL++++S++SR + LE + +L R R TLTE G K Sbjct: 5 EDMTMFIRVVDAGSITKAAEQLNIAKSAVSRCLKELEMRLNTQLISRTTRNSTLTEAGQK 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++E ++ + + G +R+ + G L + + +P + + Sbjct: 65 YYQEACSILGEVELLNEKISGVASQLEGTMRLTAPLSFGLMHLNDIIHNYAQQHPQLSFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + + AIR+ + ++ SS ++L I A+P Y+K P SI+ Sbjct: 125 LDFSDRQIDLVEEGYEMAIRIGE-LKDSSYQAKRLTVIRRVLCASPEYIKQAGIPDSIES 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+ + +G L K E AT R E S ++ N+ ++ + G GIA +P Sbjct: 184 LKQHSFLQYG-LQNKQGEILLIDATGQRHKIETS-SRIKANNGNFLLDMAIKGHGIAYMP 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 +I ++ LV +MED P+ T Y YP+ Sbjct: 242 TFIAYESLAKGELVPVMEDYHLPTLTAYAVYPK 274 >gi|288933113|ref|YP_003437172.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288887842|gb|ADC56160.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 299 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 126/278 (45%), Gaps = 21/278 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE L L + S+SRQI LE+ +G++L +R R + LT+ G + Sbjct: 7 MQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SG+LR+ + + L+ +L FL YP I+++L Sbjct: 67 ERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKLVIPHLPTFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + A+P YL P S+++L Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLIARPLGKLTQINCASPDYLARFGYPQSLEDLA 185 Query: 188 KHNLITFGDLI---PKCME-----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H LI + + P E W+ T L VNS + C+ G Sbjct: 186 DHALIHYASTLGVRPPGFEVVIDGAVRWVKTG---------GILTVNSTETYQAACIAGL 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI +P V++ +L I+ V YP Sbjct: 237 GIIQVPRTGVREALRAGDLTEILPQYRAEPLPVSLIYP 274 >gi|160897111|ref|YP_001562693.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362695|gb|ABX34308.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 296 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 13/289 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR VF V GSF AA +L +S + + + LE +G +L R R +LTE Sbjct: 2 DKLRNMEVFMAVVEDGSFAQAARRLDISAVMVGKHVQQLEAHLGARLLQRTTRRHSLTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +V+ +L + ++ S P G LRI+ LG +++ + ++ L P + Sbjct: 62 GRSFYEDSRQVFEQLRWAESAVERSRSAPQGLLRISAPTTLGNHVIAPLVADYQLANPLV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L + D+ + D A+R+ P+ L+ R L M AAP YL+ P Sbjct: 122 RVDLQLSDSMADLVGENIDVAVRI-GPVGGEGLVARPLQPYRMVIAAAPSYLRRRGHPRG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L +H+ +++ W+ D + P + L+ NS + + G G Sbjct: 181 VDDLARHDCLSYA----VWQRRSEWILRGDGSGSVQWPEDARLRCNSGDGLRHAALRGLG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + L P+ ++ + LV +++D + V+ Y + KL F Sbjct: 237 LILQPEVLLAADMAAGRLVPVLQDCVPLPRPVHLVYLPDRRQLPKLAQF 285 >gi|295689813|ref|YP_003593506.1| LysR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431716|gb|ADG10888.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC 21756] Length = 304 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 7/285 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 V V G F AAE + L+ S +SR I+ LE++VG +LF RH R + LT+ G++ H Sbjct: 13 VMAAVVEHGGFARAAEVVGLTPSGVSRAIARLESQVGARLFDRHPRKVALTQAGARFHAE 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + S + G+L+++ + +L L E L YP++ L + Sbjct: 73 VAPLLAAIGEAAETAAADSAQVRGRLKLSVDPWFARIVLAPRLPELLARYPELSFDLRVT 132 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N D+ D AIR P+ + LI RKL+ + AAP YL+ P ++ H Sbjct: 133 NAFEDMLGGGVDIAIRFGPPL-GAGLIARKLLETRVLTVAAPAYLERRPRPREPADIAGH 191 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + I F D P+ F W + + S L ++ + + C GSG+ + Sbjct: 192 HAILFRD--PQSRRPFTWEFQRGGKAVEVSVTSRLMLDDPSAALAACEAGSGLFQSFELG 249 Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + LV ++++ F +Y Y GK++ F +F+ Sbjct: 250 LESWLEGGRLVTVLDEWAEERFPLYAYYASRHHLPGKVRVFLDFL 294 >gi|149920140|ref|ZP_01908613.1| putative transcriptional regulator protein, LysR family [Plesiocystis pacifica SIR-1] gi|149819083|gb|EDM78520.1| putative transcriptional regulator protein, LysR family [Plesiocystis pacifica SIR-1] Length = 301 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 10/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D F + +GS T AAE L L ++++SR+++ LE +G++L +R R +TLT G Sbjct: 5 DGFEEFITIVDAGSLTAAAEVLDLPRATLSRRLAKLEQRLGVRLLHRTTRRMTLTPAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 LH+ + + E++ P G LR++ L L FL YP++ ++ Sbjct: 65 LHQRARVLVEGARDVEAEVRRLDGVPRGLLRVSVPSTLAHEFFARWLTAFLQAYPEVSLE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +D+ + D A+R R PI SLI R + A A+P YL+ P + E Sbjct: 125 FVATSLHVDLVAEGFDLALR-RGPIDDPSLITRSMSVDTSIAVASPAYLERAGTPTTPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 LD HN I + + LA G +S + + + + L G GIAL+ Sbjct: 184 LDAHNCIVGYRAGRQPERRWPLLAG-----GSVTVSGSLATNDIELRRAVALSGLGIALI 238 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y D L+ ++ + + V Y E K++AF +F Sbjct: 239 SAYSAHANLDQGELIHVLPEHVGARERVNLVYVEREFLDPKIRAFVDF 286 >gi|325525033|gb|EGD02942.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 315 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YPD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRLHSFASVGHHYVLPALTRYHAQYPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P Q+L Sbjct: 126 SLSQRMPDLFDGTSDTAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPAHPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L W+ ++ P G +I +Q N+ S+ G GI + Sbjct: 186 GAHACLT---LCTPAFPTHEWV--LEGPDGVEQIRVAGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + +LVR++ + I VY YP R FI K R W Sbjct: 241 LPLYSAIDALRDGSLVRVLPEHILQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|241206045|ref|YP_002977141.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859935|gb|ACS57602.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 303 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 6/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L + +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE L S PSG+LR+ ++ L +F YPDI+I L Sbjct: 67 ERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R P SLI R++ + M A+P Y++ P ++L+ Sbjct: 127 VGDRTVDYLAENVDCALRAGTP-ADQSLIARRVSEVEMITCASPSYIQKFGMPERPEDLE 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + F + + PR VN + + + G GIA +P Sbjct: 186 ADHYTVNYFRAQNNRTLPFEFRRHNEVIETSPRY-IASVNDSRTYLTAALTGLGIAQVPI 244 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LVR++ D +Y YP + K++ F +++ Sbjct: 245 FMAREPMARGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWL 291 >gi|170736588|ref|YP_001777848.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818776|gb|ACA93358.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 302 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 143/294 (48%), Gaps = 21/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RV+ + + F+ AA++L + S++SRQ+ LE +G++L R+ R +LT G + + Sbjct: 7 MRVYRSLVEAKGFSAAADRLDTTHSTVSRQLKLLEASLGVQLVNRNTRHFSLTPAGERYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ ++ ++ ++ +PSG LR++ + +G + L F YPDI++ + Sbjct: 67 DACVEILERVAAAAEDVTDTPGQPSGVLRVSIPLSVGTLEMPAWLPAFRTAYPDIRLDVS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +++ + D A+R+ + S L+ + L AAP Y+ P + EL+ Sbjct: 127 CSDRFVNLIGEGFDVALRISSELPDSDLVAKTLAISDEILVAAPDYVARRGLPRTPAELE 186 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241 KH+L+ + GD + +W V P G P L++++ ++ + G GI Sbjct: 187 KHDLLAYSGGD------DRISW--RVAPPSGAPVTVRLDGPLRIDAITALHAAALGGLGI 238 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290 + V ++ R++ I P T+ Y YP++ K++AF +F+ Sbjct: 239 GAFTHHTVSNDIAHGRLVP--ILPGHTLAKRRYYALYPKSRHVPPKVRAFVDFV 290 >gi|291616182|ref|YP_003518924.1| PtxR [Pantoea ananatis LMG 20103] gi|291151212|gb|ADD75796.1| PtxR [Pantoea ananatis LMG 20103] gi|327396421|dbj|BAK13843.1| HTH-type transcriptional regulator PtxR [Pantoea ananatis AJ13355] Length = 298 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 21/298 (7%) Query: 1 MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+F W + +F +VA GSFT AAE+ L +SS+S++IS LE +GI+L R R L L Sbjct: 1 MAFRQWQDMALFALVAECGSFTAAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G + E+ E + + PSG+LRI + +G LL FL Y Sbjct: 61 TFAGERYLLHCQEMMQASERAEQAIASLRENPSGRLRITSPAGIGATLLARCNAAFLRRY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PD+ + + + + D+ D D A+R +P Q SSLI R++ AA YL Sbjct: 121 PDVTLDISISDDIRDLVQDGFDLALRTGQP-QESSLIGRRVGYCQRSLVAAQAYLDQHPP 179 Query: 180 PLSIQELDKHNLI---TFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYC 235 Q+L H I + + + K + ++ WL + + L + Sbjct: 180 VTHPQQLAAHRCIAHRAWNEWVLKRHDQYHRWL-----------LPPAHLTDNLLYARES 228 Query: 236 VLGS-GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LGS GI LLP +++ + LV+++ + ++ YP N+ L + F Sbjct: 229 ALGSAGITLLPRFLIDGEMHDARLVQVLPEWEMEGNELWLVYPSRKLNSPALMKYIEF 286 >gi|82545885|ref|YP_409832.1| transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|81247296|gb|ABB68004.1| putative transcriptional regulator LYSR-type [Shigella boydii Sb227] Length = 323 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|77458950|ref|YP_348456.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382953|gb|ABA74466.1| putative LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 283 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 14/288 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW +R+F +AR+GS AA +L +S ++ R++ LE G F R A+GL LT+ Sbjct: 1 MDWSDMRIFLAIARNGSLGGAARELGVSHPTVGRRLQVLEQTSGQAFFLRTAQGLVLTDS 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + ++ H + L +P G LRI++ ++L L E + YP I Sbjct: 61 GERILGLAQDMEHSALAIERRLAGHGDQPEGLLRISSADWFACHVLSPVLSELVHRYPLI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++I ++ D++ AD A R+ P ++ RKL T+ YAA H P Sbjct: 121 VPEVIAGHRLFDLARRDADIAFRI-VPFTEPDIVHRKLTTLSYGLYAASH------APTP 173 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + LI ++ D WL P+ + +S Q C G G+A Sbjct: 174 QPDGEGLGLILM-NIAQAHYPDVQWLQQ-RYPLAR---TVFTSSSRTVQAQMCAKGLGVA 228 Query: 243 LLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +LP ++ D+ + +R++ ED P ++ Y + ++ +L+A + Sbjct: 229 VLP-RVLGDSVSGLRLLDEDEPPPGRDIWMGYHQDMRQMDRLRALADL 275 >gi|254239508|ref|ZP_04932830.1| hypothetical protein PA2G_00122 [Pseudomonas aeruginosa 2192] gi|126192886|gb|EAZ56949.1| hypothetical protein PA2G_00122 [Pseudomonas aeruginosa 2192] Length = 291 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF + R + AA LH+ Q+++ R+++ LE +G LF R + G LT Sbjct: 1 MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G E+ K+E + +EL + + SG++R++TT L + + L L Sbjct: 61 GE----AAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +PDI++ L + +D+ D AIR +P ++ LI RKL + M +A+ YL+ Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P+ + H+L+ + E L PI + R+ + VNS + + Q G Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230 Query: 239 SGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285 G+ LP Y+ + LVRI + + V+ + L++T +++A Sbjct: 231 LGLCELPLYM-GERDGLVRIWPQRERRRPYEVWMVTHKDLRHTARVRA 277 >gi|332995147|gb|AEF05202.1| transcriptional regulatory protein [Alteromonas sp. SN2] Length = 293 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 140/289 (48%), Gaps = 8/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD LR+F +AR+G + AA LHL +++ R++ LET + LF +G LT+ Sbjct: 1 MNWDDLRLFLGLARNGKISIAARNLHLDATTLIRRVKRLETALNCNLFELSNKGYLLTDH 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + +L + + SG +R++ + G +L L EF YP I Sbjct: 61 GKRLVNYIEHAERHILEAKNDLTDERQELSGTVRVSASEGFGSWVLAPALAEFKQRYPAI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ ++ ++I+ AD AI L KP + L ++L ++ Y + P S Sbjct: 121 CVELVANSGFLNINKREADIAILLEKPTK-GLLYTKRLTDYRLNLYMHEDLVAAHGAPTS 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I++L NL+++ DLI +F ++ + P + L+ S + Q +G+ Sbjct: 180 IEQLSPFNLVSYVPDLIYAPQLNF-----IEESLLSP-LHALKSTSINAQFQMLRNKAGV 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP +I K+ L +++D I + T + +++ ++ F +++ Sbjct: 234 GILPHFIAKNAHELQPVLQDKINITRTFWLATHRDVRHLARVNVFLDWL 282 >gi|239834478|ref|ZP_04682806.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239822541|gb|EEQ94110.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 304 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 140/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G +L R R +LTE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +++ Q + E+S G+++++ ++ +L +F L +P+I + + Sbjct: 66 YHRAVEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ + +Q SSLI ++L H AP + +P ++L Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPERPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + ++++ T + P ++VNS ++ + G G ++LP Sbjct: 185 ADRPCII--DTNARSRNNWHFRNTDGSMMTVPVNGPIEVNSPVATKNAALAGLGFSMLPA 242 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I ++ LV +++ I +Y YP K++A +F+ Sbjct: 243 FIAEEEIERGRLVSCLDEFIVKDGGIYAVYPHRRYLPAKIRALVDFL 289 >gi|253990745|ref|YP_003042101.1| LysR family transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639076|emb|CAR67688.1| Transcriptional regulator, LysR family [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782195|emb|CAQ85359.1| Transcriptional regulator, LysR family [Photorhabdus asymbiotica] Length = 305 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 146/300 (48%), Gaps = 19/300 (6%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +VF ++ GS A+E+L +S++ +SR ++ +E G++L +R R ++LT G +++ Sbjct: 9 QVFTIIVEQGSMIAASERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGEIVYQ 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ++ E + + + SG +RI+++ L + L + EF+ +YP I I + + Sbjct: 69 HSRKLLQLSEEIPVHQPVEAQELSGLVRISSSQSLAMSALSVAIPEFMQIYPQIAIDMQM 128 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 NK I++ + D A+R+ ++ +LI R L T H AAP YL P +L Sbjct: 129 SNKAINLVEERIDLALRITNNLE-PNLIARPLSTCHSVVCAAPSYLTGKMIPQKPADLAL 187 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALL 244 HN +T+ + K + WL +R GE P L N + +M+ + G+GIA+ Sbjct: 188 HNCMTY-NFFGKSL----WL--FERQ-GEKYSVPVSGILSANESVVLMEATLQGAGIAMQ 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 P Y V + L+ ++ + + +Y Y L+A +F+ F + W+ Sbjct: 240 PYYSVASHLASGKLIHLLPEYQPQAMGIYGIYASRQNMPATLRALLDFLAKWFASSPYWQ 299 >gi|290509190|ref|ZP_06548561.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289778584|gb|EFD86581.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 305 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 15/251 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A + SF AA L +S S++ + ++ LE ++G++LF R R ++LT +G+ Sbjct: 6 SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + EL S +P+GKLRI+ + +G LL F LYP +++ L Sbjct: 66 LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPAFTAFTRLYPQVELDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +++ + D AIR + S LI RKL A+P YL P S EL Sbjct: 125 DFSDRLVNLIDEGFDVAIR-SGELADSRLIARKLGGFRFVLCASPAYLAEYGVPGSPAEL 183 Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 H I F G + P + D R G+ R + + VN+ + ++ G G Sbjct: 184 AAHKCIFFRFPSTGLIQPWELRDM-------RLTGDFRATAVMTVNNIEAAIRLSAAGMG 236 Query: 241 IALLPDYIVKD 251 IA +PD++V++ Sbjct: 237 IAYVPDFVVRE 247 >gi|209519868|ref|ZP_03268651.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209499686|gb|EDZ99758.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 304 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 141/289 (48%), Gaps = 13/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F A+E + +S +SR I+ LE + I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDAGTFAAASEVIGMSPPGVSRAIARLEKRLKIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + + GKLR+ + +L L +F+ +PD++I+ + Sbjct: 74 VMPHLAGLEEAAVAAAGGASAVRGKLRVNLDPVCYRAILGPQLDQFIDAHPDLEIEFMAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187 + D+ ++ D A+R +P ++S+LI RKL+ + AAP Y+ P ++L+ Sbjct: 134 DHLGDLVLEGFDLALRFGEP-RTSTLIARKLLDTAVVTVAAPSYVARRGRPAKPEDLEGP 192 Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H + F + P+ + F W R + PR L VN +++ C+ GSGIA Sbjct: 193 SHRCLEFRN--PETGKPFPWEFHRKRKRMVIAPR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L ++++ + L+ + D + +Y CYP K +AF +F+ Sbjct: 250 LLGAEHLIAEG-RLINLFPDWPDERYPLYACYPSRHHMPAKTRAFMDFV 297 >gi|172065152|ref|YP_001815864.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997394|gb|ACB68311.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 345 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 11/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V G+F A+E + ++ +SR I+ LE ++ I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE S+ GKLR+ + + +L L F+ +P+++I+LI Sbjct: 74 VMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGPQLDSFMDAHPELEIELIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187 + D+ MD D A+R +P ++S+LI RKL+ + A+P Y+ P ++L+ Sbjct: 134 DSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPAYIARWGRPTKPEDLESR 192 Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H I F + P+ + F W R + + R L VN +++ C+ GSGIA Sbjct: 193 SHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LL + N L+ + + F +Y YP K +AF +F+ Sbjct: 250 LLGAEPLIANGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFV 297 >gi|222081054|ref|YP_002540417.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725733|gb|ACM28822.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 300 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 18/300 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G F+ AA +L++S + ++ + LE +G++L R R ++LTE G + Sbjct: 7 LSVFGKVVEHGGFSAAARRLNMSVTMVATHVQSLEERLGVRLLNRTTRKVSLTETGKFYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +S++ +LE + P G L+I ++ + + LL + E+L LYP + + + Sbjct: 67 DRSSQILAELEEADRAAGALTTTPRGTLKIYSSAAIVRFLLP-VIDEYLQLYPSVSMDVD 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + ID+ D D IR P SSL+ RKL + +P YL+ EP + EL Sbjct: 126 IGERTIDMIEDGHDLVIRT-VPSPDSSLMVRKLTSWRHVLVCSPSYLEEHAEPKTPAELA 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243 HN + + P E W D GEP +Q NS ++ V G + L Sbjct: 185 AHNCLQYS-YYPYGDE---WHFEADN--GEPASVRVQGNARSNSAETLRHLAVNGRAVWL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 P +IV ++ L+R+M + FT+ YP K++ F + + F + R W Sbjct: 239 APSFIVSEDLAEGRLIRMMPEFRGVEFTINAIYPNRSHLPTKVRLFIDLLVERFAEHRKW 298 >gi|323525605|ref|YP_004227758.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382607|gb|ADX54698.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 314 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 26/312 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L VF V SGS T AAE+L + S +SR ++ LE ++ L R R L LT Sbjct: 1 MKTSTDELLVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + +E + + +PSG+LR+ + + ++ F LYP Sbjct: 61 EEGEGFLQRARAILDAMEEAEESVARKRRRPSGRLRVDAASPFMLHCIAPHMTAFSELYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L + + +D+ D AIR+ +Q S+L R L + + A+P YL EP Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRI-GALQDSTLHARALGSSRLRVVASPAYLAAHGEP 179 Query: 181 LSIQELDKHNLITFG-----------DLIPKCMEDFNWLATVDRPIGEPRI----SCLQV 225 ++ L +H LI F + + L R G+P + Sbjct: 180 KAVDALRQHRLIGFTAPEHLNRWPLRERGARSSASSGRLGRDGRDGGKPEPLKIEPSITA 239 Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALK 278 +S ++ Q + G GIA L D+++ + P L + D P VY+ ++ Sbjct: 240 SSGETLRQLALSGWGIACLADFMIAADIRDGRLVPILGHALFDERQPVAAVYY---QSAS 296 Query: 279 NTGKLKAFRNFI 290 G+++ F +FI Sbjct: 297 LAGRVQCFLDFI 308 >gi|172060688|ref|YP_001808340.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993205|gb|ACB64124.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 310 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 3/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 13 IELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E P+G LRI+ G + L F YPD++++ Sbjct: 73 EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVRVETH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P SSL+ RKL + A P YLK P ++ +L Sbjct: 133 LSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLKRAGVPRAVDDLH 191 Query: 188 KHNLITFGDLIPKCMEDFNWL 208 H I F +P WL Sbjct: 192 AHECIQFE--LPSSGRPIPWL 210 >gi|78060381|ref|YP_366956.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77964931|gb|ABB06312.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 321 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 14/292 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA SFT AA ++ +S++++S+ + LE + +KL YR R ++LTE+G +L+ V Sbjct: 12 FAHVAHHRSFTKAAAEMGVSRANLSQNVKALERRLNVKLLYRTTRDMSLTEEGQRLYDVW 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +E T L E+ P+G +R+ T+ + L++ +L+EF +P + ++L++D+ Sbjct: 72 YPALVAVERTVDALHEARDAPTGLIRMNTSRVAAKTLIEPHLEEFSTRFPGLGLELVMDD 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I D D IR+ + + + ++ M P Y K EP + +L +HN Sbjct: 132 GLANIVADGCDVGIRIGESLAPHMVAVPITPSLEMAVVGTPAYFKRHGEPATPADLVRHN 191 Query: 191 LITF----GDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + F G + P D + P+G + N +++ + G G+ Sbjct: 192 CLRFRQVSGAIHPWEFASPDASGHGFTVEPLG-----SITTNDDDGMIRAALQGVGLIQH 246 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 D V+ D+ LVR+++ P Y P + K++A +F+ K Sbjct: 247 IDIAVQPHLDSGALVRVLQPWCKPFAGFYVYAPTRAQMPMKIRALIDFLVEK 298 >gi|154245010|ref|YP_001415968.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159095|gb|ABS66311.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 301 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 143/288 (49%), Gaps = 10/288 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V +GSF+ AA + ++ S++S+ I+ LE +G++L R R L LT +G Sbjct: 7 EMMVFVRVVEAGSFSEAARLMLMTPSTVSKLIARLEARLGVRLIERSTRRLALTGEGQFY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + +L+ T+ ++ + + G +R+ +++ G L+ L F YP + + L Sbjct: 67 YERSQALLGQLDETEQQIAQGGAEAEGVVRVTSSVSFGSAALEPVLPAFFEAYPKVIVDL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ +D D AIR+ K + S+L+ RK+ A+P YL P + ++L Sbjct: 127 SLSDEVVDLYLDRTDVAIRVGKLVD-SNLMARKIGETRRRIVASPAYLARHGTPATPEDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 HN + F + M W I E +S L VN+ ++ + + G GI L Sbjct: 186 VHHNCLGFN--FRRAMP--VWPMREGGRIVERMLSGSLLVNNGDTLRRMAIAGVGIIRLA 241 Query: 246 DYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 DY +++ LV ++ D I + V+ + A +++AF +F Sbjct: 242 DYHLREPIARGELVELLADTDIGVTDDVHALFRGAQFLPARVRAFLDF 289 >gi|261252111|ref|ZP_05944684.1| transcriptional regulator LysR family protein [Vibrio orientalis CIP 102891] gi|260935502|gb|EEX91491.1| transcriptional regulator LysR family protein [Vibrio orientalis CIP 102891] Length = 297 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 22/295 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++ +F VA+ SF+ AAE L +S+S +S QI+ LE E+ L R R + LT G Sbjct: 8 FERYALFSEVAKQLSFSKAAESLGISRSYLSSQINQLEHELATSLLIRSTRSVRLTAAGE 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 K+ + + + EL + + SG LRI L +F L+PDI+ Sbjct: 68 KILAKMHGINASILELEKELDHTKSEVSGLLRITAPTIFSHRFLVDICHQFQQLHPDIEF 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + D++ + D AIR +++ +KL+ A+P YL PL+ Sbjct: 128 DLDIGYNRQDLANSHFDLAIRATN-TPPDNMVAKKLMPYQHICCASPDYLIRKGTPLTPS 186 Query: 185 ELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 +L +HN CM D N W + +IS + ++ ++ G Sbjct: 187 DLIEHN----------CMSDPNLRQW--QFSKQGNSEQISTHGDMLISDNQLLLAAAEKG 234 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P Y+V+ DN +LV++++D + +Y YP L+++ KL AF +F+ Sbjct: 235 KGIIKMPCYLVQPALDNGSLVQLLQDYVIAESAIYLIYPPQLRSSAKLSAFTDFM 289 >gi|188590953|ref|YP_001795553.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|170937847|emb|CAP62831.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 304 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/302 (25%), Positives = 130/302 (43%), Gaps = 18/302 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V GSF+ AA+ L ++ S++SR +S LE +G L R R LTE G Sbjct: 7 NAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEGRLGASLLQRTTRAFALTELGQS 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + E P G LR++ + GQ L L L YP + +Q Sbjct: 67 VYAACARMTAAAREVTALAGEHGGAPHGVLRVSAPVSFGQAWLAPRLPPLLAKYPGLDLQ 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D A+R+ + + + L R L + A+P YL P + + Sbjct: 127 LTLADRMVDLVEEGLDVAVRIAREL-APGLAARPLREVRYRLVASPAYLARHGAPATPAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSG 240 L + G +F T+ G ++ L +N+ L+IM +G Sbjct: 186 LPAARCLYLG------YGNFGERWTLRHHAGGDKVEVRIPPRLTLNNSLAIMSMVERDAG 239 Query: 241 IALLPDYIVKDNPNLVRIME-----DVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294 I L+PD+ + D R++ D++ P T Y Y K++AF + + A Sbjct: 240 IGLVPDFSLGDALERGRVVTVLGDWDILEPYIGTAYAVYTPTRHVPPKVRAFVDHLAASA 299 Query: 295 RD 296 D Sbjct: 300 GD 301 >gi|319780389|ref|YP_004139865.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166277|gb|ADV09815.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 297 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D ++L F VA SFT AA +L ++QS++S +I LE ++GI+L R R + T G Sbjct: 5 DLNQLTWFQAVAEERSFTKAAAKLGVAQSTLSHRIKQLEAQMGIRLLTRTTRNVATTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L KPSG +R+ + ++++ LK L YPDI Sbjct: 65 ERLLQTIAPRIGEIEDEIAALMAFREKPSGSIRLTLSDHALESVVWPKLKPILSAYPDIG 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LILD+ +I + D +RL + ++ + R + A A+P Y P Sbjct: 125 VELILDSTFRNIVEEGFDAGVRLGESVEKDMIAVRIGPDWRLVAVASPDYFAARGVPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L +H I + + W D R++ L N+ +++ V G GIA Sbjct: 185 QDLIRHVCINMRHETAGGL--YAWEFEKDGQALRVRVNGQLTFNNSYAMIDAAVHGYGIA 242 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFR 287 +P+ IV+ + LV++++D +P F YF YP +N L AF+ Sbjct: 243 YVPENIVEQHIASGLLVQVLDD-WSPFFDGYFLYYPSRRQN---LPAFK 287 >gi|115358490|ref|YP_775628.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115283778|gb|ABI89294.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 315 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 18/295 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YPD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P Q+L Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPARPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H +T L W+ + + ++ +Q N+ S+ G GI +LP Sbjct: 186 GAHACLT---LCTPAFPTHEWVLEGAEGVEQIHVAGPVQTNTAESLALAIRDGIGIGMLP 242 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 Y D + LVR++ D I VY YP R F+ K R W Sbjct: 243 LYSAIDALRDGTLVRVLPDHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|330816957|ref|YP_004360662.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327369350|gb|AEA60706.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 299 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 25/302 (8%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL F V + SF+ AAE L L +SS++ + LE +G L R R L+LTE Sbjct: 2 DKLHAMTTFVRVVEARSFSKAAETLSLPRSSVTTTVKQLEAYLGTPLLRRSTRSLSLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ + + L + P G++R+ +G+ + L F YP+I Sbjct: 62 GERYLASCRAILGEIASAERALLSEAHAPRGRVRVDLPGVIGRACVLPRLAAFEARYPEI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ D+ + DC IR + + SSL+ R+L + A+P YL+ EP S Sbjct: 122 ELVLGLSDRPADLIHEGIDCVIRTGE-LADSSLVARRLGELAWITCASPRYLERHGEPAS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLG 238 I L +H ++ + L +W VD GE R L VN + +Q + G Sbjct: 181 IDALGEHRIVNY--LSNATGRPLDWRFRVD---GEARAMTLPSRYAVNETEAYLQCALEG 235 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+ + + + L ++ D+ S V YP+A N A R FI Sbjct: 236 LGLIQISAFAAAAYLRSGRLREVLADLRCASVPVSIVYPQARVNA----AVRTFI----- 286 Query: 296 DW 297 DW Sbjct: 287 DW 288 >gi|207722333|ref|YP_002252769.1| hypothetical protein RSMK04930 [Ralstonia solanacearum MolK2] gi|206587510|emb|CAQ18092.1| hypothetical protein RSMK04930 [Ralstonia solanacearum MolK2] Length = 301 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 14/252 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A +F AA L +S S++S + LE +G++L R R ++LTE G +L Sbjct: 8 ELTAFIAIAEQRTFRAAAGMLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R LE E+ +PSG +RI+ + + +++ L +FL YPDI ++ Sbjct: 68 LRRVRPAVADLEDAVNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHVEC 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D + +DI D D IRL + + + R + A A+P YL N P + +L Sbjct: 128 VVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPHDL 187 Query: 187 DKHNLITF----GDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H I F G L +E A VD P L + + ++ + G G Sbjct: 188 AQHRCIRFRFESGALYRWDLEHRGKAAHVNVDGP--------LTLGNLNLAVEAALAGIG 239 Query: 241 IALLPDYIVKDN 252 IA +P+ +V ++ Sbjct: 240 IAWVPENLVAEH 251 >gi|295680999|ref|YP_003609573.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440894|gb|ADG20062.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 309 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 128/287 (44%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA + SF AA QL ++ S I+ +I LE V LF+R R + L+E G + Sbjct: 7 IEAFVRVAETSSFAEAARQLGVTSSVITTRIQQLEKFVNAPLFHRSTRVVRLSEVGEAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R +EV ++ +++E P+G+LRI L EF YP IQ+ +I Sbjct: 67 RECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ +D + D A ++ PI + SLI+R+L + A P Y+K P ++L Sbjct: 127 VNDRVVDPIEEGFDVAFQIFPPI-AESLIERRLFKVRRLFCATPAYVKEHGAPQHPRDLL 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + W T + E + ++ NS + Y + G G+ LP Sbjct: 186 QHTTALYSGYPSRN----RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPT 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + +LV I+ D YP + K+KA F+ Sbjct: 242 LVASAALLDGSLVPILTDYTLSPLNFAAVYPATQRQALKVKALVEFL 288 >gi|220922492|ref|YP_002497794.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947099|gb|ACL57491.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 295 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 11/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD L+ F VAR G A +L L+ ++++R++ LE +G LF+R G +LTE Sbjct: 1 MNWDHLQTFLAVARHGQMLEAGRKLGLNHATVARRLECLEAALGTALFHRRPNGSSLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L V + + + ++ +PSG +RI LG L L + + Sbjct: 61 GERLLPVAERIEADVLSVTARMRAEEAEPSGTVRIGAPDGLGNLFLARELGALSCQHAKL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L+ + +S AD AI L +P+ LI KL + YA+ YL+ P + Sbjct: 121 VIELVPLPRSFSLSKREADLAIGLDRPVD-GRLILSKLTDYSLSLYASRRYLEQSGMPET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240 +EL H + ++D+ + + +D + R + + ++ G G Sbjct: 180 TRELAGHAAVI-------GVDDYAYASALDYSAFLQSRCRRAFRCAGAIGQLEAVKAGVG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +L D+ D +LVR++ + +P++ ++ A R+FI Sbjct: 233 IGILHDFAAADCADLVRVLPETRFQRSYWLMSHPDS-HEARRIVACRDFI 281 >gi|148554102|ref|YP_001261684.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499292|gb|ABQ67546.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 326 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 12/274 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD L +A +GSF AA +L +S S ISR + LE + +LF R R + LTE G Sbjct: 4 WDGLEEIVAIADTGSFVGAARRLRVSASQISRAVQRLEHRLRAELFIRTTRSVQLTEAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + + ++L + G++R+ + LG+ + ++ F+ +P + + Sbjct: 64 TLVEQCRRIIDERDEA-LQLARGQGEMQGEVRLTCSTALGERFVAPIVRRFIETHPRLSV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L N+ +D+ + D AIR P L R++ + A+P YL P + Sbjct: 123 RLELTNRLVDLVSEGFDVAIRTGHPT-DHRLAARQIASRPAEVCASPAYLARAGHPRGLA 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +LD+H + + +ED + V P G R C NS +++ + G GI L Sbjct: 182 DLDRHECLIGTSVNWHFLEDGQRRSFV--PSG--RWRC---NSGNAVVDAALAGMGICQL 234 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 P + V+D+ LV ++ED V+ YP+ Sbjct: 235 PSFYVRDHIAAGRLVALLEDYRDRPEPVWAVYPQ 268 >gi|94309688|ref|YP_582898.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353540|gb|ABF07629.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans CH34] Length = 310 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 126/296 (42%), Gaps = 17/296 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M FD + VF A G+ + AA L LS S+ S ++ LE +G +L +R R L+LT Sbjct: 1 MPFDLTDIAVFVRAAALGNLSAAARDLGLSTSTASARLQRLEDRLGTRLLHRTTRRLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + E + + P G LR+ G+ + + FL YP Sbjct: 61 GDGERFLTHAEPLLAASEVAAQSVGRGAEVPHGPLRVTAPASFGRQHVSPAIPAFLATYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + L L ++ + + D A+R+ + SSL+ R L H A+P YL P Sbjct: 121 GITLDLRLSDQIVGLVDSGIDVALRMGA-LPDSSLVARPLAPSHRVICASPEYLARHGSP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 ++L HN + GD W D P+GE +S L+ ++ I V Sbjct: 180 RHPEDLRNHNCLVLGD-------QSTW--RFDTPVGESAVSVRGTLRADNGEVIRDAIVA 230 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 G GIAL + V LV ++++ + P +++ YP K AF +F Sbjct: 231 GVGIALKSTWDVAPYLRRGELVTVLDEYPVLPVVSIWAVYPSRHLVPAKTHAFVDF 286 >gi|299137605|ref|ZP_07030786.1| transcriptional regulator, LysR family [Acidobacterium sp. MP5ACTX8] gi|298600246|gb|EFI56403.1| transcriptional regulator, LysR family [Acidobacterium sp. MP5ACTX8] Length = 306 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 7/281 (2%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 V SGSF AA L ++QS++SR I+ LE +GI+LF+R R + LT +G + + + + Sbjct: 17 VVESGSFVRAANTLGVTQSAVSRAIAKLEVRIGIRLFHRTTRTVKLTAEGKQFYEEIAPL 76 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 ++ + G LR+ + L+ + +FL YP++ ++L+ + Sbjct: 77 LDGIKNAVTLASGTGASVKGHLRVNIDPLFSRLLIAPQIGKFLDRYPELSLELVTRSLLG 136 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ + D IR P SSL+ RKL+ + AAP Y+ P +L HN + Sbjct: 137 DLVSEGFDVGIRFGDP-APSSLVIRKLLDTRILTVAAPGYINKFGRPSKPTDLSHHNCLQ 195 Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD- 251 F + + + W R + + S L + +++ C+ G GIA + + ++ Sbjct: 196 FRN--SATGQPYEWEFRRGRKVVPVKTDSRLMLTDAGTLLATCLAGVGIAQVMNLEIQPL 253 Query: 252 --NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ + D +F +Y YP KL+ F +F+ Sbjct: 254 LHSGKLIDLFPDWPDETFPLYMLYPSRTLPPAKLRVFIDFV 294 >gi|254295504|ref|YP_003061526.1| transcriptional regulator, LysR family [Hirschia baltica ATCC 49814] gi|254044035|gb|ACT60829.1| transcriptional regulator, LysR family [Hirschia baltica ATCC 49814] Length = 294 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 137/284 (48%), Gaps = 12/284 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R+F V GS + AA +L LSQ ++ +++ LE +G LF R GLT T + Sbjct: 7 WDDQRIFLAVLEEGSLSAAARKLGLSQPTVRKRLEILEHALGCVLFTRSVNGLTPTPKAR 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 LH ++ + + +++S+VK SG++R++ +G ++ L ++P Sbjct: 67 NLHDAAKKMA---LASDLFVRQSTVKKGEISGRVRLSVPDFMGIEVVPNFLTSLNEVHPA 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQI+L L NK ++ D AIR P Q +LI ++L I + +A+ YL P Sbjct: 124 IQIELELSNKPANLLDQEVDIAIRTIAPHQ-DALIAKQLPPIQLGFFASKKYLAKRDIPQ 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ + + HNLI + D ++ + I L+ +++ + + G GI Sbjct: 183 NLSDFEMHNLIGPD----RNRTDIAIAQSISPHFSDANI-VLKCDNHPAHLSAARAGLGI 237 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 A+ +PNLVRI+ D I +V+ E K+ +++A Sbjct: 238 AVAQIPAGNKDPNLVRILPDFIVADMSVWVVTHENFKHDPRIRA 281 >gi|206562206|ref|YP_002232969.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198038246|emb|CAR54200.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 305 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 14/290 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + SF AAE+LH+++S++ + I+ LE +G+ LF+R R +LT++GS + Sbjct: 10 VFVAAVEASSFAQAAEKLHITRSAVGKSIARLEERLGVVLFHRTTRSQSLTDEGSLFYEH 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +++ + L+ + G+LR++ G + L +PD+ ++L Sbjct: 70 CLRAMDEIQAGEALLETGKWQMKGRLRVSMPTLFGHLCVAPILIGVAKAHPDLDLELSFS 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D++ + D A+R+ SS L+ R L M A+P YL EP + +EL++H Sbjct: 130 DRSVDLAEERFDLAVRIGTLPNSSGLVARALAEHRMAFCASPAYLSRYGEPQTWRELEQH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + + W VD R +P + L + ++M + G+A LP + Sbjct: 190 KALAY----TRFGQVHRWPVLVDGERVELQPAVRLLS-DDLRALMDAALADLGVAWLPYW 244 Query: 248 IVKDN------PNLVRIMEDVITPSFTVYFCYPE-ALKNTGKLKAFRNFI 290 +V+D L+ V+ P V+ P LK + A R + Sbjct: 245 LVRDALRGGALRELLPAQPGVVYPIHAVWPATPHLPLKVRAAVDALREHL 294 >gi|148360190|ref|YP_001251397.1| LysR family transporter transcriptional regulator [Legionella pneumophila str. Corby] gi|296107987|ref|YP_003619688.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy] gi|148281963|gb|ABQ56051.1| transcriptional regulator, LysR family [Legionella pneumophila str. Corby] gi|295649889|gb|ADG25736.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy] Length = 301 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 13/295 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L +F +V + SFT AA + +S++ +S++IS LE ++ IKL R R L+LT Sbjct: 5 SLNLNDLAIFALVVKKRSFTQAALEAGISKAWVSQKISQLEGKLDIKLLNRTTRSLSLTL 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L + ++ + L+E + PSGKL I G +L L +F LLYP Sbjct: 65 GGEILFEHCQAMLKEVIHAENHLREYAKAPSGKLVITCPEISGLDLFPALLHQFKLLYPQ 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+I+LI+ ++ +D++ D A R K + S L+ R + + A+P YL N Sbjct: 125 IKIRLIITDQFVDLTQQGIDFAFRTGK-LTDSGLVSRYIGAVPRCLVASPEYLSNNSPIK 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGS 239 S +L H L+ L +WL + + + ++ NS + + + L Sbjct: 184 SPADLFNHQLLKHSSLP-------DWLLKKEEEAFKIHVKNPVIESNSLIFLHKMSCLHH 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA LP Y+ D + LV+++ D + Y Y + + F++FI Sbjct: 237 GIAFLPYYLCSDALKHKTLVKVLPDWLNVDNEYYMVYHKEKSVLYIHQLFKDFIL 291 >gi|308051406|ref|YP_003914972.1| LysR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307633596|gb|ADN77898.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM 9799] Length = 314 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A +L L + +S QIS LE + ++L R R L++T +G L Sbjct: 10 RLAIFATVVEQGSFSAAGRKLGLGRGKVSEQISALEQALSVRLLQRSTRQLSVTAEGQVL 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R ++ + E+Q+ +P G+LR+ TT D+ Q +L L F YP IQ+ L Sbjct: 70 YRHCRDLLPQASQGLREVQDLGPEPMGRLRLTTTSDVAQQVLSPFLSRFCQQYPGIQLDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +++ + D AIR+ P+ SS++ +L + M YAA YL P S+ +L Sbjct: 130 QLADAVLNLVEEDIDIAIRIGTPV-DSSMVGIELGALPMGLYAATSYLAQWGVPESLPDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQYCVLGSGIAL 243 H + + + V +P G P R N+ L G GI L Sbjct: 189 SAHRGVQMTRMPNLSTLMLSNDEGVSQPAGLPVFHRTDTPAGNATL-----VEQGLGIGL 243 Query: 244 LPDYIVK 250 LP + + Sbjct: 244 LPHFTLN 250 >gi|238895073|ref|YP_002919808.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547390|dbj|BAH63741.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 305 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A + SF AA L +S S++ + ++ LE ++G++LF R R ++LT +G+ Sbjct: 6 SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + EL S +P+GKLRI+ + +G LL L F LYP +++ L Sbjct: 66 LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQVELDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +++ + D AIR + S LI R L A+P YL P S EL Sbjct: 125 DFSDRLVNLIDEGVDVAIR-SGELADSRLIARTLGGFRFVLCASPAYLAEYSAPGSPAEL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H I F P W R G+ R + + VN+ + ++ G GIA +P Sbjct: 184 AAHKCIFF--RFPATGLIQPWELRGMRLTGDFRAAAVMTVNNIEAAIRLSAAGMGIAYVP 241 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D++++ D L ++ +P + + +++ F +FI Sbjct: 242 DFVLREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFI 289 >gi|332524392|ref|ZP_08400607.1| LysR family regulatory helix-turn-helix protein 18 [Rubrivivax benzoatilyticus JA2] gi|332107716|gb|EGJ08940.1| LysR family regulatory helix-turn-helix protein 18 [Rubrivivax benzoatilyticus JA2] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 1/190 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R + V SGSFT AA+QL L ++S+S+Q+ LE ++G++L R R +T T +G Sbjct: 4 FEAMRAYVQVVDSGSFTRAAQQLGLHKASVSQQVQQLEAKLGVRLLTRTTRKVTPTTEGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + H + +L+ + L++ S G+LR+ + +G+ L ++ FL +P I + Sbjct: 64 RFHERARSILQQLDEAETTLRQGSRALQGQLRVDVPVAVGRLLFAQEIRGFLDSHPGIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L ++ +D+ DCA+R + + S L+ R + + AAP +L+ P + Q Sbjct: 124 ELGCTDRRVDLVAAGVDCALRGGE-LPDSGLVARPVGALRFVLCAAPRHLERHGVPATPQ 182 Query: 185 ELDKHNLITF 194 L H + F Sbjct: 183 ALAAHPQVGF 192 >gi|237811263|ref|YP_002895714.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|237504524|gb|ACQ96842.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] Length = 327 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 13/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + F V GS + AAE L +S S SR ++ LE + +L R R L++TE G Sbjct: 4 WAEYEFFVRVVEMGSLSKAAEALSISTPSASRLLATLEKRLDARLIERSTRRLSVTEVGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V ++ + ++S PSG LR+ ++ L + L +F YP++Q+ Sbjct: 64 TFYARCKTVLDEMNEAEEAAAQTSRSPSGVLRVTASLSLMLQHVATLLPDFTQRYPNVQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+ N+ DI+ + D AIR R+ S+LI R+L T A+P Y++ P Q Sbjct: 124 ELVAANRYYDITDNDIDVAIRTREDEPDSTLIIRRLATTRRVLAASPAYIQRHGMPAVPQ 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L KH + + P+ + T R I P L N + + G GI Sbjct: 184 ALPKHKFLGYSYHNPREL-------TFQRDGESISIPLTPLLDANDGQIVRVAALDGLGI 236 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P Y++ D+ L+ ++ D P ++ Y K + F +FI Sbjct: 237 LAQPMYVIYDDVMAGRLIPLLLDWELPRLSINLVYRRRALIPAKTRVFLDFIL 289 >gi|150397932|ref|YP_001328399.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029447|gb|ABR61564.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 30/304 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF G F+ AA ++ S++S+ + LE +G++L R R L LT +G Sbjct: 11 EMEVFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRRLQLTPEGHAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H T + ++ + + P+G++R+ G ++L + EF +P + + + Sbjct: 71 HERTVRILADIDEAE-RSASAGESPTGRVRLNVNASFGTHVLMRLVPEFRASFPAVSLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ + +D+ D AIR P++SS+LI RKL M AP Y++ P S+++L Sbjct: 130 VMTDAVVDLMEARTDVAIRA-GPLKSSTLIARKLGATRMMIVGAPSYVERYGMPSSLEDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGE----PRISCLQVNSYLSIMQYCVLG 238 H + F C + VD R GE P +QV+ + Q + G Sbjct: 189 AGHERLGF------C-----YARAVDGWPIRAEGETIVLPASGAVQVSDGEGLRQLALAG 237 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +G+A L ++ V+++ LV ++ED+ + VY AL +++A +F+ Sbjct: 238 AGLARLAEFTVREDVRAGRLVPVLEDLNPGDLEEVHAVYLGQGGALP--ARVRAVLDFLA 295 Query: 292 LKAR 295 AR Sbjct: 296 RHAR 299 >gi|319795549|ref|YP_004157189.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598012|gb|ADU39078.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 304 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 10/277 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++ +F VARSGSF AA +L + +++SR+I LE +G +L R R LTLT Sbjct: 2 LDLNEVAMFVQVARSGSFAEAARRLSVPSATVSRRIQQLEARLGTRLMQRSTRKLTLTSA 61 Query: 63 GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G H R V +E Q+ + ++S +PSG +R+ + FL +P Sbjct: 62 GESFHERCGPAVEELIEAGQLHVADNS-EPSGTVRVTAPTSFFDFFQMEWVDTFLAEHPQ 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++ +L + +D+ D D A R P+Q S + R++ + A+P YL P+ Sbjct: 121 VRLDFVLSDLLVDLIADRIDIAFR-GGPLQDSCYVARRIFASYGELTASPAYLAAHGVPM 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 S+++L +H + D + V++ + R+ N+ + Q G G Sbjct: 180 SLEDLGEHECVVQPDASGNAIWRLQDAEGVEKDV---RVKGRFNSNTQSVLRQAACAGLG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 IA LP + LVR++ + YP Sbjct: 237 IAALPSILTAPEIAAGRLVRVLPGYTRAGRGLSVVYP 273 >gi|283788428|ref|YP_003368293.1| LysR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282951882|emb|CBG91598.1| putative LysR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 134/287 (46%), Gaps = 14/287 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA +GSFT AA++ L +SS+S++IS LE +VGI+L R R L LT G Sbjct: 8 MALFALVAENGSFTAAAQKAGLPKSSVSQRISQLEQQVGIRLINRTTRKLNLTYAGEHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + LQ PSG+LRI + +G LL F YPD+ +++ Sbjct: 68 VHCREILAASERAEYALQRLRDNPSGRLRITSPAGIGATLLARLNARFQQRYPDVNLEVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D A+R +P Q S+LI R + + A+P YL ++L Sbjct: 128 ISDEMLDLVDSGFDVALRTGRP-QDSTLIGRMIGHCPRYLLASPDYLSRYAPLRHPRQLP 186 Query: 188 KHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H IT D ++ DR ++ + + + G+GI LLP Sbjct: 187 EHQCITHKAWTEWVFHRGDEDYQHVPDR--------VHLTDNLVYARESAIAGAGITLLP 238 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 ++++D L +++ + ++ YP N+ L ++ F Sbjct: 239 AFMLEDRVEKGELTQVLAEWTVAGNDLWLVYPSRKLNSPALMSYIEF 285 >gi|152984691|ref|YP_001347687.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959849|gb|ABR81874.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7] Length = 315 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 12/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V GSFT AA L S +++SRQ++GLE + +L R+ R + +TE G + + Sbjct: 7 IRTFVRVVEHGSFTQAARLLGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTETGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++++S PSG+LR+ +LG L L ++L YP++ + L Sbjct: 67 EHCKQILRTVAAAAADVEDSQSHPSGRLRVHAATELGLGHLMPLLADYLDRYPEVCVDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + + D + L + + SSL+ R+L + A AAP YL+ P S EL Sbjct: 127 LTQDSPALLDEGLDMLVVLGRALPDSSLVARELGHVFSVACAAPAYLERHGAPRSPWELR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 H + I W D E R+ L+VN + G G+ LL Sbjct: 187 HHRCLQ----IAGASGAQAWSFVHDG--AEARVEVRDVLKVNLPEAACLAASAGLGVCLL 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + L+R++ D V+ YP K++ + +F+ Sbjct: 241 PGFVAARALQDGRLLRVLPDYRLLPREVFALYPSRRYLDAKIRTWIDFL 289 >gi|134293960|ref|YP_001117696.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137117|gb|ABO58231.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 14/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR +F AA++L ++Q ++++Q+ LE V ++LF R RGL LT G + Sbjct: 14 NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDAVEVQLFRRLPRGLALTRDGLE 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + L + +P+ L ++TT L L +F +PDI+++ Sbjct: 74 YFSSVQRALQLIADATLALGQ---RPAA-LTVSTTPSFASKWLIPRLADFGRQHPDIEVR 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D + D D AIRL KP + L + L + + A A+P L SI + Sbjct: 130 VVADERLASFRADGVDIAIRLGKPPFPAGLTAQLLSPLDVFAVASPTLLDGAPPIRSIDD 189 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P+ ++ VD G PR S S L+I + G GIAL Sbjct: 190 LSTHVLLHDAHDLWPEFVDKLGGRGRVDATKG-PRFS----QSLLAI-DAAIAGQGIALT 243 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + +V+ + L R+ + S Y +P A + L+A R ++F + Sbjct: 244 SEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPNANVQSDTLEAMRRWLFAQ 295 >gi|325293834|ref|YP_004279698.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gi|325061687|gb|ADY65378.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 145/292 (49%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+F+ AA L++ +++++ + LE + L R R + LT G+ + Sbjct: 7 MRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLHTTLLNRTTRRVMLTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S++ ++E + + V+PSG+LR+ ++ +L EF YP I++ L Sbjct: 67 ERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQIRLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R+ ++ SLI RK+ + +A+P Y+++ P ++L+ Sbjct: 127 VGDRLVDYIAENVDCALRV-GTLRDQSLIARKVGELKFETFASPLYIESFGMPQQPEDLE 185 Query: 188 K-HNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H+ + T G ++P + N L +V+ P + VN + + + G G+ Sbjct: 186 NGHHSVGYFNATTGQIMPISFD--NGLRSVEI---TPNY-VVSVNDSRTYLNAALAGMGM 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++VKD LV ++ + +Y YP+ T K++ F +++ Sbjct: 240 VQLPVFMVKDALARGELVPVLPEWRREPMPIYVVYPQTRHVTNKVRVFVDWL 291 >gi|194364608|ref|YP_002027218.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347412|gb|ACF50535.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 302 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 15/287 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR + +GSFT AAE+L + S++SRQ+ LE + ++L R++R L+LTE G + Sbjct: 7 LRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGRDYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + + +L+ + +PSG +RI+ + L L FL YP + + L Sbjct: 67 REAAALLDRLQEADDRARAGQAQPSGTVRISVPQVVASQELPHWLPSFLQRYPQVTLDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D++ +D+ D A+R+ + S L+ R+L + AAP YL P +L Sbjct: 127 ADDQLVDVVGGGFDLALRIAASLPDSQLVARELASCPRILVAAPAYLARHGLPRQASDLA 186 Query: 188 KHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H L+ F ++P ++ AT G+ L+V++ ++ + G GI+L Sbjct: 187 QHTLLGFSPTPSMLPWQLQGPRG-ATASIEAGQ----RLRVDATPALYAAALAGMGISLF 241 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTV----YFC-YPEALKNTGKLKAF 286 V+++ R++ + P++ YF YP A K++A Sbjct: 242 TALTVQEDLRAGRLIR--VLPAWHAGQRHYFALYPHARALAPKVRAL 286 >gi|295095336|emb|CBK84426.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 311 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 122/243 (50%), Gaps = 8/243 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +GSF AA +LHLS+S++ + I+ LE +G++LF+R R LT+ G+ + Sbjct: 10 VFVASVEAGSFAQAAVRLHLSRSAVGKSIARLEERLGVRLFHRTTRSQRLTDNGALFYER 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + L+ + +G+LR+A + G+ + L E +P +++++ Sbjct: 70 CLRALEEIRGAESLLETGKQQVTGRLRVAMPVLFGRQCVAPLLIELAQEHPGLELEMSFS 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R SS L+ RKL M AAP YL +P ++ +L +H Sbjct: 130 DRVVDLVEEGFDMAVRNGTLQDSSVLVARKLGEHRMVLCAAPDYLLKNGQPQTVDDLRQH 189 Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I + G ++P + D++ + P S L ++ +I + G G+A LP Sbjct: 190 TAINYTRAGRVLPWQLMDYDGTSRTFIP-----RSSLNMDDLQAICDAALAGHGLAWLPC 244 Query: 247 YIV 249 ++V Sbjct: 245 WMV 247 >gi|262395350|ref|YP_003287203.1| transcriptional regulator LysR family [Vibrio sp. Ex25] gi|262338944|gb|ACY52738.1| transcriptional regulator LysR family [Vibrio sp. Ex25] Length = 300 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA + L++S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 5 DDYIIFYHLIEQGSFSAAARHMSLTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 VY + T + + SG ++++ G+ +L + EF YPDI I Sbjct: 65 FFTHAKAVYQAVATAEESIVGLGKNLSGNIKVSVPTISGELILPQVINEFNQKYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI + D AIR + SSLI RKLV + A+P YL P Q Sbjct: 125 MDLDNRFVDIVNERFDLAIRT-GVLPDSSLIARKLVDANWIVCASPQYLAKHGIPKQPQA 183 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 LDKHN + + E D + TVD L N+ + +LG Sbjct: 184 LDKHNCLVYSYQETGAHEWAFKDGDEVYQITVD--------GNLCTNNSSVLRNVALLGQ 235 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI +P +V ++ L+++ +D +Y YP + K+K F + ++ Sbjct: 236 GIIYVPRVLVYEDLKQGRLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290 >gi|15890853|ref|NP_356525.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15159148|gb|AAK89310.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 305 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 8/294 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA L S +++SR I LE + KLF R+ RG LT Sbjct: 5 FTWDDLQYFLAVARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTTV 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + E Q ++ ES G +R++ LK+F +P I Sbjct: 65 GRRLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAATHPHI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ + + +S AD A+ L P ++ I +++ +H YA+ YL + Sbjct: 125 MVEMVTIQQIMALSRKEADVAVTLDPP-KAGPYINEQIIDYTLHIYASRSYLAGHPKITR 183 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L H I + DLI D+ R + Q +S + + + G G+ Sbjct: 184 REDLPNHFFIGYVQDLIFSPGLDYM------RDVWPGLRPNFQSSSIFAQLTATLSGRGL 237 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +LP++I P+L ++ + + + N ++++ +FI AR Sbjct: 238 CILPNFIAARFPDLQMVLPGDVELRRGYWLTSHQDFANVPRVRSLMDFILTTAR 291 >gi|72383949|ref|YP_293303.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gi|72123292|gb|AAZ65446.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] Length = 304 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 14/299 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + VF V SGSFT AA+ L L ++++SR++ LE +G++L +R R L LT Sbjct: 1 MPLDMNDTLVFLKVVESGSFTAAADDLRLPKTTVSRRVRELEQRLGVQLLHRTTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ + L + + P G LRI + L NLL L +F P Sbjct: 61 EAGTLYFETCRAIPGLLAKADAVVDQLRGVPRGTLRITASYSLSVNLLGPLLADFRAACP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ I L+L+++ +D+ + D A+R+ + SS+ R L T YA+P YL P Sbjct: 121 EVGIDLVLNHRTLDLVGEEIDLALRMGD-LPDSSMAARWLTTFPNRVYASPAYLARYGAP 179 Query: 181 LSIQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 ++L +H + G +D A D PI ++ + + Sbjct: 180 AHPRDLGQHAALATRVARRSGTHAWPMRQDGTGEALADYPIH----PVIEADDPEVLKAP 235 Query: 235 CVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+ + D I+ + +V ++ + ++ +P + KL+AF +F+ Sbjct: 236 LFAGAGLMMATDMIMARHAAQRLVVPVLPGWVGRCPALHAVFPRGQVQSPKLRAFIDFL 294 >gi|209549940|ref|YP_002281857.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535696|gb|ACI55631.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 307 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 15/274 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GSF + + LS+S+ + + LE +G +L R R L+LT++G + Sbjct: 11 IFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGARLLNRTTRTLSLTDEGRVFYER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + + L S P G LR+ G+ ++ L+++L +PDIQ+++ Sbjct: 71 GLQILASVAEAEASLGGQSGMPRGLLRLTVPDAFGRLVVLPLLEKYLRAWPDIQVEVSFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + DI D D AIR+ + L+ R + T A+P YL P I++L H Sbjct: 131 DHLSDIIEDGFDLAIRIGAAASDTRLVSRVIATYKTRLCASPSYLAANGAPREIEDLAAH 190 Query: 190 NLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + + F + + F +W+ R S L+++S +I + G GIALL Sbjct: 191 DCLIFANRNQRQGWRFRGKGGSWIKAQGR-------SRLRLDSGEAIRDAALAGLGIALL 243 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 PD+++ + L +++ D+ + YP+ Sbjct: 244 PDFLIAGDLAAGRLRQVLPDLEADDAKIVTLYPD 277 >gi|313108447|ref|ZP_07794451.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|310880953|gb|EFQ39547.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 21/254 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V SG F+ AA + ++ S++S+ I+ LE +G +L R R L LT +G Sbjct: 11 ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + LE + E++ P G+LR++ + G + L + EFL +P++ + + Sbjct: 71 YERGVRILADLEEAERCASENAA-PRGRLRVSANVPFGHHFLLPLVPEFLAQHPEVTLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +DI D A+R P++SSSL+ RKL + M AP YL P + Q L Sbjct: 130 VLTDEVVDILEQRTDVAVRA-GPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS----IMQYCVLG 238 HN + N++ T R GE + L N+ S + + V G Sbjct: 189 LGHNRL-----------GANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAG 237 Query: 239 SGIALLPDYIVKDN 252 G+A L + V+++ Sbjct: 238 LGLARLAAFQVRED 251 >gi|218516900|ref|ZP_03513740.1| probable transcriptional regulator protein, LysR family [Rhizobium etli 8C-3] Length = 307 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 24/288 (8%) Query: 19 SFTHAAEQ---------LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F HAAEQ +S S+I + ++ LE+ +G++LF R R ++LTE+G+ L+ Sbjct: 11 AFVHAAEQQSYVAAARLAGVSPSAIGKAVARLESRLGVRLFNRTTRSISLTEEGTVLYEH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V + + + + +P G+LR++ +G +LL L F +P+I++ + + Sbjct: 71 YKRVLDDMRDAEAAVSKGRDRPRGRLRVSVPHIVGHHLLMPILPGFTARFPEIELDIDFE 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ ID+ + D +R + + + LI R L H A+P YL P + +L +H Sbjct: 131 DRVIDLITEGLDVVVRSGE-LADARLIARPLGEQHFVVCASPAYLDRHGRPETPDDLSRH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245 I F P W RP E PR L N+ + ++ G G+A LP Sbjct: 190 ACIHFK--YPSTGRTAPW---AFRPPSERLLLPR--SLTFNNTDAGLRAARDGLGLAHLP 242 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ + + L+ ++ D + P ++ +P + + K++AF +F+ Sbjct: 243 VYVAEPHIRAGTLIPVLTDSMAPFGSLSLVWPSNRQLSPKIRAFVDFV 290 >gi|222111007|ref|YP_002553271.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730451|gb|ACM33271.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 24/298 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +AR+G+ AA + + ++++R+I LE ++G LF R A G LTE Sbjct: 1 MDWDNLRYFLELARTGTLAGAARRTGVEHTTVARRIQALEKQMGAPLFAREAAGHRLTET 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESS------VKPSGKLRIATTIDLGQNLLQGNLKEFL 116 G L +E + ++ +S PSG +R+ T G +L +L Sbjct: 61 GRHL----LPAVEAMEAAVLGVERASPANSPGAGPSGLVRVGATEGFGTVVLAPHLARLT 116 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 +P + I L+ + + +S AD I L +P + S+I KL + Y YL Sbjct: 117 QKHPHLSIDLLALPRMLHLSRREADIVISLERP-KRGSVIVTKLADYTLRLYGQREYL-- 173 Query: 177 CREPLSI--QELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 R PL ++L H I++ D L K ++ + L +R L+ S + Sbjct: 174 ARRPLVAKREDLRHHAFISYVDDLLFTKELQFIDQLYPPER-------FALRSTSITAQY 226 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+G+A+LP ++ +P L R++ + T + P K+ +++A F+ Sbjct: 227 EAVRAGAGLAVLPAFLADRDPVLARVLPHEAEFTRTFWMSMPAESKHLARMQAVWAFL 284 >gi|153833375|ref|ZP_01986042.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] gi|148870384|gb|EDL69310.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ I + + + G +R+ +G++++ + EF+L YP+I + L Sbjct: 70 QECEKALRDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYPNITVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D AIR+ + ++ + I RKL+ I M A+P+YLK EP++ +EL Sbjct: 130 DFSSPRIDLIEDQFDVAIRMGE-LEDAGFIARKLMMIDMVTLASPNYLKTHGEPVTPKEL 188 Query: 187 DKHNLIT 193 KH +T Sbjct: 189 AKHRTLT 195 >gi|77458661|ref|YP_348167.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382664|gb|ABA74177.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 337 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 131/281 (46%), Gaps = 15/281 (5%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 FD+ + VF V GS + A L + S +SR IS LE +G++L R R L+LT+ Sbjct: 34 FDYLADVEVFVTVVEKGSLSAGAVFLGTTPSVVSRAISRLEARLGVQLLRRTTRRLSLTD 93 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ + +Q + SG++R++ G L L F +P Sbjct: 94 AGVLYLEQSRAAFGLIDDAERTIQGQDGELSGRVRLSVPTTYGHYRLPAMLARFTRQHPQ 153 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++L + N+++D+ + D AIRL + S LI RKL + AAP YL+ P Sbjct: 154 VRVELSISNRNVDLVAEGFDLAIRL-GALPDSGLIGRKLEDAGLCVVAAPDYLRRAGTPQ 212 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQV-NSYLSIMQYCV 236 S+ +L +H + F ++P WL R GE R + +QV + L I+ Sbjct: 213 SVDDLQRHACLPF--VMPSTGRVGPWLF---REQGEDREWLPSANIQVSDDVLGIVSLAE 267 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 G GI D+IV+ + LVR++E S YP Sbjct: 268 QGLGICQTYDFIVRERIEGGRLVRLLEQSGGRSRPFSVIYP 308 >gi|54310460|ref|YP_131480.1| LysR family transcriptional regulator [Photobacterium profundum SS9] gi|46914903|emb|CAG21678.1| putative transcriptional regulator, LysR family [Photobacterium profundum SS9] Length = 305 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 128/283 (45%), Gaps = 27/283 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR +A+ GSF AA L + +++SR++ LE +G +L R +R + LT G Sbjct: 11 DDLRALIAIAQHGSFRAAANALDIPPATLSRRLQRLEDTLGSQLVIRDSRNVALTPLGQN 70 Query: 66 LHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +L+ T EL + SS P G LRI+ + L L +FL LYP++ + Sbjct: 71 YFERCQPLLDELQATTSELMDTSSSNPRGALRISAPVGLLTYQLMPLFNQFLALYPEVTL 130 Query: 125 QLI-LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L N+ D S + D R+ ++P +SS K+ A+P YL P Sbjct: 131 SLNHLSNQHHDYSQEQYDVVFRVGQQP--NSSFAAAKIGESQRTLVASPEYLAQYGIPHH 188 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---------RISCLQVNSYLSIMQ 233 EL+ H+ + + +F W T + P R++ +N S+ Q Sbjct: 189 PDELNHHSRLA-------TVPEFEWALTCKTDVAHPETIWINSPVRMAIADLN---SVKQ 238 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + G GIA LP+Y+V D L +M+D +P +Y Y Sbjct: 239 AAISGLGIACLPNYVVADALEKSTLTTMMDDWYSPPRPIYMLY 281 >gi|325926818|ref|ZP_08188123.1| transcriptional regulator, LysR family [Xanthomonas perforans 91-118] gi|325542784|gb|EGD14242.1| transcriptional regulator, LysR family [Xanthomonas perforans 91-118] Length = 344 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 131/290 (45%), Gaps = 17/290 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F + SFT AA + + +S+ ++ I+ +E +G++L R R + T G Sbjct: 45 FDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGE 104 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H+ + ++ + + V P G LR+ L ++ L L F YP IQ+ Sbjct: 105 LFHQRCMRILDDVDDAEGSFR--GVAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQIQL 162 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R P++ S L+ R++ + A P YL+ P ++ Sbjct: 163 VMSESDRWVDLVEEGIDCVLRY-GPLRDSELVARRVAMLERLTCATPQYLRRFGLPAQLE 221 Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 LD+H + IT G + P + + T P S L V S + LG Sbjct: 222 ALDQHRMVGLRSITTGVVTPLEFQTAQGVRTFALP------SPLSVTGTESYLAGIRLGL 275 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIA +P + V + LV I+ D PS V Y A + + +++ F Sbjct: 276 GIAQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVF 325 >gi|260769871|ref|ZP_05878804.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|260615209|gb|EEX40395.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] Length = 308 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 130/275 (47%), Gaps = 15/275 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA SF+ AAE+L L ++S+S I LET+ G +L R R ++LT G + Sbjct: 7 MHTFVRVAELASFSRAAEELGLPKASVSNHIQLLETQAGARLLQRTTRKVSLTPDGRTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + E ++ + SG++R+ + + ++ +L EFL +P +Q++L Sbjct: 67 ERCLDLLAEFEELDTLFVQTEQQLSGRIRVDMPTGMAKGVVVPHLAEFLQQHPGVQLELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D +R + + S+LI RK+ + + YA+P YL EP + +L Sbjct: 127 STDRRVDVVREGFDFVVRAGQ-LSDSALIARKVCDMAVRTYASPDYLARHGEPQTPDDLS 185 Query: 188 KHNLITFGDLI---PKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H L+ + + P E D L T++ L VN+ S C+ G G+ Sbjct: 186 HHQLVHYAQNLGGQPDGWEYWDGERLRTIE------MAGALTVNNAESYTAACLAGIGLI 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P+ V+ + LV ++ + VY YP Sbjct: 240 QTPESGVRKLVASGQLVEVLANFTCQPLPVYLLYP 274 >gi|33592134|ref|NP_879778.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33571778|emb|CAE41284.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gi|332381550|gb|AEE66397.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 311 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 124/276 (44%), Gaps = 24/276 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VAR+ SF AAE L + +S++SRQ++ LE VG++L R R + LTE G Sbjct: 7 MELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ELQ PSG LR+ D G + L EF YP++ L Sbjct: 67 ERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLD 126 Query: 128 LDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 L + + D+S++ D + S+ I R L + H YA+P YL E Sbjct: 127 LASPEHAERVFQTCDVSIEIGD--------LPDSTHIARLLGVLPAHLYASPDYLARHGE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P +L +H I F + W L + +R + + VNS + LG Sbjct: 179 PQHPDDLPRHECIQFRAGTGRVT---RWPLNSGERHVEITPGNRFSVNSVSMVRNLATLG 235 Query: 239 SGIALL-PDYIVKDN---PNLVRIMEDVITPSFTVY 270 +GIA+L P V+++ L RI+ D + F VY Sbjct: 236 AGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVY 271 >gi|186476004|ref|YP_001857474.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184192463|gb|ACC70428.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 288 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V +GS T AAE+ LS + + + I LET++ +L R R +LTE G + + Sbjct: 1 MEVFVAVVEAGSLTAAAERFDLSSAMVGKHIRSLETQLSTRLLTRTTRRQSLTEIGRQYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + + P G L+I + G L + ++L LYP++ ++L Sbjct: 61 EQCRRILADVKAAESLAEAMTSAPRGTLKITVPLTYGVELFSPAMTDYLNLYPEVSLELD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ D+ + D A+R+ + + SSL+ R L M A A+P YL+ P + +L Sbjct: 121 LSNRIFDLVDEGFDAAVRIGR-LPDSSLVARPLKPYRMRACASPSYLQRMGTPATPADLV 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + F + + A D + R + N+ ++ + G G+ L P+ Sbjct: 180 HHECLGFLHWGREGLWRLGGDAEADYQL---RPGRFRANNGQALKMAALRGFGLVLQPEA 236 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ LV ++ED + V+ YP + T KL F +F+ Sbjct: 237 LLAREIGRGELVSVLEDYLPEGAPVHLIYPRDRQPTPKLTTFIDFV 282 >gi|21240858|ref|NP_640440.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21106131|gb|AAM34976.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv. citri str. 306] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 17/290 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F + SFT AA + + +S+ ++ I+ +E +G++L R R + T G Sbjct: 4 FDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H+ + ++ + + V P G LR+ L ++ L L F YP IQ+ Sbjct: 64 LFHQPCMRILDDVDDAEGGFR--GVAPKGLLRVDVQGTLARHFLLPGLPAFFARYPQIQL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R P++ S L+ R++ + A P YL+ P ++ Sbjct: 122 VMSESDRWVDLVEEGIDCVLRY-GPLRDSELVARRVAMLERLTCATPQYLQCFGMPTQLE 180 Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 LD+H + IT G + P + L T P S L V S + LG Sbjct: 181 ALDQHRMVGLRSITTGVVTPLEFQTAQGLRTFALP------SPLSVTGTESYLAGIRLGL 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIA +P + V + LV I+ D PS V Y A + + +++ F Sbjct: 235 GIAQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVF 284 >gi|295680500|ref|YP_003609074.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440395|gb|ADG19563.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 134/289 (46%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +G+FT AAE L + +S++R I LE ++ ++L R R +T+T +G+ + Sbjct: 7 MNAFVRVVEAGTFTKAAETLDMPNASLTRLIQKLEEDLKVRLLQRTTRSVTVTPEGAIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +KPSG+LR+ +G +L L +F YPDI I+L Sbjct: 67 ERVVRLLAEFADIESSTTHARMKPSGRLRVDAATAIGALVLVPALDDFYRTYPDIGIELQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+ D+ + DCAIR + + L+ R++ + A P +L P S +L Sbjct: 127 VGNERTDLIAEGFDCAIRAGR-VDEQFLVARQIGSFGFTTCATPAFLAAHGTPTSPDQLS 185 Query: 188 KHNLITFGDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L T G +IP F +L DR G L VN + + + GI Sbjct: 186 A--LPTIG-MIPSHAGYPPSFPFLYD-DRKDGLQLKHRLVVNDTNAYLAAGLASLGIIQA 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V+D LV ++ED P+ V+ YP + K + F +++ Sbjct: 242 PTYSVRDAIAAGKLVPLLEDWPQPTIPVHVIYPPNRYLSAKARVFIDWL 290 >gi|190573105|ref|YP_001970950.1| putative LysR family regulatory protein [Stenotrophomonas maltophilia K279a] gi|190011027|emb|CAQ44636.1| putative LysR family regulatory protein [Stenotrophomonas maltophilia K279a] Length = 311 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A +GS AA L LS S++ ++I+ LE E+G +LF R R + LT++G L Sbjct: 7 LLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQELGTRLFQRTTRRVHLTDEGELLL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L Q +L + PSG LRI +G L L F YP +Q++L Sbjct: 67 QRCRRALDELSEAQADLAQRQHAPSGLLRIGLPT-IGYRFLLPVLPGFQQRYPQVQLELD 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR + + SSL R+L AAP YL+ P + EL Sbjct: 126 FNDRIVDVVSEGLDAVIRSGE-LADSSLTARRLGGFRFILCAAPGYLQAHGTPGDVSELR 184 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H + F G L P + A P ++C + + L+ C+ G+A Sbjct: 185 MHTALRFRYPTTGKLHPWQLPGIEGDAGARLPTA---MTCNNMEAVLAAAIGCM---GLA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +PD++ D + L R++ + T +P + +L+ F ++ Sbjct: 239 WMPDFLAADALSDGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDY 288 >gi|330829873|ref|YP_004392825.1| LysR-like transcriptional regulator [Aeromonas veronii B565] gi|328805009|gb|AEB50208.1| LysR-like transcriptional regulator [Aeromonas veronii B565] Length = 297 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 130/284 (45%), Gaps = 25/284 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L VF +VAR GSFT AA +L L+QS +SR I LE +G++L R R L+LT+ G Sbjct: 9 NYNDLHVFMLVAREGSFTKAAARLELAQSGVSRTIRDLEARLGVQLLMRTTRSLSLTQAG 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+R + L+ L PSG +RI + +L L F YPDI+ Sbjct: 69 EQLYRTAQGCFQSLDAGLATLAHYRDTPSGTVRINASQHAIDKVLLPKLTIFRQRYPDIR 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ ++I + D +RL + + R + M A P + P + Sbjct: 129 LELISESRFVNIIDERFDAGVRLGDEVDEGMVAVRITPDLEMVMVATPDHFLQYGFPQAP 188 Query: 184 QELDKHNLITF----GDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQ 233 +L H I + G L + W A RP G+ S +SY+ Sbjct: 189 ADLAGHPCIAYQFADGSL-------YQWELWQEGKAIKHRPQGQWVFS----DSYMEAAA 237 Query: 234 YCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274 +G G+A +P+ +V D L+++++ +Y YP Sbjct: 238 -AKMGLGLAYVPEELVSDELERGILIQVLKPYSHRLAGLYLYYP 280 >gi|262279328|ref|ZP_06057113.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259679|gb|EEY78412.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 144/295 (48%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D F +V G F+ A + +S +SR++ LE +G++L R +R +T Sbjct: 1 MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++R + + + + S++P G ++++ +D+ QN L L FL YP Sbjct: 61 DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I++QL++ N+ +D+ + D A+R+R + SL+ R+ I +A+ YL + Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238 + ++L +H +++ + + ++ L D + ++S + + + + ++ Q Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFILHGPDNQQKKIKVSPIVMGTNIHMLAQLASQN 237 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP+ +D + L++I+ + P + YP G L A R FI Sbjct: 238 CGIALLPESAAEDFLKSGQLLQILPEWKAPHGVFHAVYP---SRRGLLPAVRVFI 289 >gi|104781266|ref|YP_607764.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110253|emb|CAK14960.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 13/290 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F VAR SF A++ +S + +S++I LE +G++L +R R ++++E+G + Sbjct: 8 DDLDIFLQVARRASFAAVADERGMSAAFVSKRIRLLEESLGVRLLHRTTRRVSVSEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ +++ ++ +L +P+G+LRIA+++ LG+ + L E YP + I+ Sbjct: 68 VYQWAQQIFDTVQRMDDDLNAGQREPAGQLRIASSLGLGRRFVAPALSELAARYPRLDIR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + LI + L AAP YL P + + Sbjct: 128 LDVHDRLVDLIAEGVDLDIRVGNVI-APHLIAKPLARNRRVLCAAPSYLAEHGAPRVLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H+ + +I + F L ++ P GE + L N Q+C+ G GI Sbjct: 187 LASHDCL----VIKERDHPFG-LWHLEGPQGEESVRVTGALSSNHGEVAHQWCLDGRGIL 241 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L + V D + LV+++ D + ++ Y L + K++ F Sbjct: 242 LRSWWDVYDSIADGRLVQVLPD-YQQAADIWAVYTAPLAGSAKVRVAVEF 290 >gi|116049070|ref|YP_792128.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296390492|ref|ZP_06879967.1| transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|115584291|gb|ABJ10306.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 291 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF + R + AA LH+ Q+++ R+++ LE +G LF R + G LT Sbjct: 1 MNWDDTRVFLALCREHTLRGAARALHIDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G E+ K+E + +EL + + SG++R++TT L + + L L Sbjct: 61 GE----AAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +PDI++ L + +D+ D AIR +P ++ LI RKL + M +A+ YL+ Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P+ + H+L+ + E L PI + R+ + VNS + + Q G Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230 Query: 239 SGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285 G+ LP Y+ + LVR+ + + V+ + L++T +++A Sbjct: 231 LGLCELPLYM-GERDGLVRVWPQRERRRPYEVWMVTHKDLRHTARVRA 277 >gi|153001935|ref|YP_001367616.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|151366553|gb|ABS09553.1| transcriptional regulator, LysR family [Shewanella baltica OS185] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 135/292 (46%), Gaps = 39/292 (13%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +++ D +R+F+VVA+ GSF AA+ L + S++SR+I+ LE +G++L +R A + LT Sbjct: 3 LNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ +L EL + GKLRI+ I+ L +L F YP Sbjct: 63 ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-----------HMHAYA 169 +I I L L N +ID+S + D A R+ +P + I R L TI H HA Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCASTSATHWHALQ 181 Query: 170 APHYLKN----CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQ 224 A L+ +P+ I L +HN+ +DF + EPR + L Sbjct: 182 AIEALEQHPVIIAKPVKIWRL-QHNITG---------QDFEF---------EPRGNIKLA 222 Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 V+ Q V G GI LLP + + + LV+I+ + T Y Y Sbjct: 223 VDDMAIASQAVVAGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMY 274 >gi|157163000|ref|YP_001460318.1| LysR family transcriptional regulator [Escherichia coli HS] gi|312972208|ref|ZP_07786382.1| uncharacterized HTH-type transcriptional regulator yhjC [Escherichia coli 1827-70] gi|157068680|gb|ABV07935.1| transcriptional regulator, LysR family [Escherichia coli HS] gi|310334585|gb|EFQ00790.1| uncharacterized HTH-type transcriptional regulator yhjC [Escherichia coli 1827-70] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL +P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHNRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|303247390|ref|ZP_07333663.1| transcriptional regulator, LysR family [Desulfovibrio fructosovorans JJ] gi|302491304|gb|EFL51193.1| transcriptional regulator, LysR family [Desulfovibrio fructosovorans JJ] Length = 295 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 19/260 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L + VAR SF+ AAE L +S S++SR+I LE +G+ LFYR R + LT+ GS L Sbjct: 8 LPLLAAVARQRSFSKAAEILGMSASTLSRRIKLLEERMGVLLFYRDTRNVKLTDTGSVLI 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + KPSG +R+ D+ + ++G L +F +PDI++ L Sbjct: 68 ERCEFILDEAQKAYDSVVTNMRKPSGLVRVCMFRDMYEEHMRGMLLDFATRWPDIRMDLT 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ +D D A L P + L+ RKL+TI YA+P K+ P+ ++ D Sbjct: 128 FAEHSVDLRIDPYDVAF-LIGPSIAPPLVARKLLTIEPFLYASPELFKH--HPMPVEPKD 184 Query: 188 KHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H L FG P M + N VD EP+ + +S + + G GIA Sbjct: 185 LHRLPCIVLERFGRRWP--MHNGNRQVIVD---IEPKYT---FSSVEMCRDFALAGHGIA 236 Query: 243 LLPDYIVKDNPN---LVRIM 259 LL D + + LVR++ Sbjct: 237 LLRDLLAAPDETAGRLVRVL 256 >gi|107022543|ref|YP_620870.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689492|ref|YP_835115.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170732798|ref|YP_001764745.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105892732|gb|ABF75897.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116647581|gb|ABK08222.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|169816040|gb|ACA90623.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 302 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 9/299 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ L F + +GS + AA +L LS S +S++++ LE+ +G++L +R R TLT+ G Sbjct: 6 DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E + +++ SG LR+ +LG+ + + F +P + Sbjct: 66 AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLVAAFQQRHPQLT 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + S++I R+L H A+P YL P Sbjct: 126 VQLMLTDAVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H I GD P+ F+ + + L N + + G+GIAL Sbjct: 185 AELRAHRCIVMGDQ-PRAEWRFD---GAQGGVAVEVTAALLTNDGGAARTLALEGAGIAL 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-WK 298 + V D LVR++ + ++ YP A +++ F +F+ + RD W+ Sbjct: 241 KSIWDVGADLDAGRLVRVLPAFEASAAPLHAVYPGARHVPLRVRTFVDFLREQLRDAWR 299 >gi|330821893|ref|YP_004350755.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373888|gb|AEA65243.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 23/261 (8%) Query: 26 QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH---RVTSEVYHKLETTQI 82 +L LS S+I++ I+ LE +G++LF+R R +TL+++G ++H R+ E LET I Sbjct: 25 ELGLSPSTIAKNIARLEARLGVRLFHRTTRQVTLSKEGEEIHARCRLILEEVESLETAAI 84 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 E + V+ G LRI + G+ ++ L++ +P + I ++ +D+ D D Sbjct: 85 EAR-GEVR--GTLRIDMPLSYGKQVVMPVLRQLNARHPALTIDARFSDRTVDVVKDGLDA 141 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202 AIR+ P+ SSL+ R+ + YA+P YL+ EP S EL +H + F +P Sbjct: 142 AIRI-GPLADSSLVGRQFDAQYFCTYASPAYLEQHGEPASPDELGEHTCLLF--RVPSTG 198 Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGIALLPDYIVK---DNP 253 + W R R L +S + ++++ V G G+ P Y+ +N Sbjct: 199 RERAWHFRSGR-----RERSLTPDSRMYLGDGEALIEAAVAGLGLVQTPRYLATRALENG 253 Query: 254 NLVRIMEDVITPSFTVYFCYP 274 LV +++ P + YP Sbjct: 254 ELVEVLKRHRAPPLPISLVYP 274 >gi|323499380|ref|ZP_08104356.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315565|gb|EGA68600.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 139/297 (46%), Gaps = 23/297 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++L+VF + + GS AA +L ++ S+S+ + LE VG+ LF R R + LTE G Sbjct: 6 YNQLQVFQAIVQEGSIRGAARKLAMAAPSVSQSLKLLENNVGLTLFNRTTRKIELTEAGR 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 LH T L +QE + +PSGKLRI + L+ EF YP I++ Sbjct: 66 LLHERTLAAMESLNYALESVQELTDEPSGKLRITLPKFVYNTYLKSRFAEFCRQYPQIEL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183 ++ + + +DI + D IR I ++ RKL A +A+P YLK P S+ Sbjct: 126 EISISDATLDIISEGIDLGIRFGN-ILEEGMVARKLTPPMKEALFASPSYLKQYGVPTSL 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++L +H LI + + N + V+ P G L VN ++ G Sbjct: 185 EDLAQHKLIQYRFITSNQYAPLNLIEDGQQTGVEIPYG------LVVNDTDLMIDAAKEG 238 Query: 239 SGIA--LLPDYIVK-DNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +LP + ++ +LV ++E + PS +YF +N+ K+K R I Sbjct: 239 LGIGRLVLPSLEHELESGDLVPVLEPMWPTYPSLYLYFS-----RNSQKVKRVRVLI 290 >gi|227820918|ref|YP_002824888.1| putative LysR family transcription regulator protein [Sinorhizobium fredii NGR234] gi|227339917|gb|ACP24135.1| putative LysR family transcription regulator protein [Sinorhizobium fredii NGR234] Length = 293 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD +RVF VAR+G A+++L ++ +++SR+++ LE + +L R G LT + Sbjct: 1 MDWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEETLKTRLLVRRPNGCELTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ Q ++ +G +RI G + L L +P++ Sbjct: 61 GEIFLSAAERMETEMLAAQSQIGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++QL+ + +S AD AI + +P Q L+ KL + YA+ YL P + Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQ-GRLVSSKLTDYTLGLYASADYLARYGTPRT 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I +L H I + DLI N+ A + R + +++S + +G+ Sbjct: 180 IDDLKNHRRIGYVEDLI--FTPSLNFSAEIMRSWD----ASFEISSATGQTEAVRSSAGV 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +L +YI + P L R++ D T + Y E+ + +++ +F+ Sbjct: 234 GILHNYIARHYPELTRLLPDT-TIRRAYWTTYHESARELVRVRTVVSFL 281 >gi|206559844|ref|YP_002230608.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035885|emb|CAR51776.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 302 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ L F + +GS + AA +L LS S +S++++ LE+ +G++L +R R TLT+ G Sbjct: 6 DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLTHLESRLGVRLLHRTTRQQTLTDDG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E + +++ SG LR+ +LG+ + + F +P + Sbjct: 66 AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLIAAFQQRHPQLT 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + S++I R+L H A+P YL P Sbjct: 126 VQLMLTDTVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H I GD P+ F+ + + L N + + G+GIAL Sbjct: 185 AELRAHRCIVMGDQ-PRAEWRFD---GAQGDVAVEVTATLLTNDGGAARTLALEGAGIAL 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V D LVR++ P+ ++ YP + +++ F +F+ Sbjct: 241 KSIWDVGADLDAGRLVRVLPAFEAPAAPLHAVYPGGRHVSLRVRTFVDFL 290 >gi|197123749|ref|YP_002135700.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173598|gb|ACG74571.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K] Length = 313 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 119/274 (43%), Gaps = 9/274 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +R F VA SFT AA+ L +S+S +S ++ LE E+G L R R + L+ Sbjct: 1 MAMDLETVRAFVKVAELTSFTQAADHLGVSKSRVSLRVRALEDELGTHLLQRTTRAVRLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + E Q G LR+ I+ + + L EFL +P Sbjct: 61 PDGERFLARARRLLADAEEVAGMFQAPRAL-RGTLRVDLPINFARQHVIPRLPEFLAAHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++QL ++ +D+ D DC +R+ + S L+ R+L + M A+P YL P Sbjct: 120 HLEVQLSTTDRRVDVVRDGFDCVLRI-GALADSGLVARRLGVLRMVNCASPAYLLRHGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +LD+H L+ + F + DR P + + VN+ + + C+ G G Sbjct: 179 RDLADLDRHVLVHYSGRFGADAPGFEYRDG-DRYKERPMRAVVTVNAADAYLAACIAGLG 237 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274 I P + + E + + C P Sbjct: 238 IIQAPRI------GMASLAEGTLVEILPAFTCAP 265 >gi|311106740|ref|YP_003979593.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310761429|gb|ADP16878.1| bacterial regulatory helix-turn-helix protein, LysR family protein 111 [Achromobacter xylosoxidans A8] Length = 302 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 20/295 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA SFT AA ++ +S++++S+ + LE + +KL YR R ++LTE+G +L+ V Sbjct: 12 FAHVAHHRSFTKAAAEMGVSRANLSQNVKALERRLNVKLLYRTTRDMSLTEEGQRLYDVW 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +E T + + +PSG +R+ T+ + LL +L+EF YP +Q++L++D+ Sbjct: 72 YPALIAVERTVRTMHDMRDEPSGLVRVNTSRVAAKTLLDPHLQEFCTRYPRLQLELVMDD 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I + D IR+ + + + + M A P Y + P++ +L +HN Sbjct: 132 ALANIVAEGCDAGIRIGESLAEHMVAVPITSALEMAVVATPAYFEQHGLPVTPADLSRHN 191 Query: 191 LITF----GDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGI 241 + F G + P W T G EP+ + N +++ + G+G+ Sbjct: 192 CLRFRQTRGAIHP-------WEFTSPEAGGHTFTVEPQGRII-TNDDDGMIRAALQGAGL 243 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 D V+ ++ LVR++ + P Y P + K++A +F+ K Sbjct: 244 MQHIDIAVQQHLESGALVRVLHNWCKPFAGFYIYAPTRAQMPAKVRALIDFLVEK 298 >gi|296156371|ref|ZP_06839209.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295892970|gb|EFG72750.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 307 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 19/299 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF+ AA L +S S++S + GLE + ++LF R R + LTE G +L Sbjct: 8 ELTAFIAIAHQRSFSAAARTLGVSPSALSHAMRGLEARLDVRLFNRTTRSVALTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R LE E + +PSG +R++ + + L+Q L FL YPDI ++ Sbjct: 68 LRRVGPAIADLEDAVNEAASARNRPSGSIRVSASESAARPLVQHVLPGFLATYPDIHVEF 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D + +DI + D IR+ + + + R + A A+P Y+ +P + +L Sbjct: 128 VVDTRLVDIVAEGFDAGIRVLQDVPRDMIATRFGPDMRFIAVASPDYVARHGKPEAPHDL 187 Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H I F G L +E A+VD + P + + + +++ + G GIA Sbjct: 188 AQHRCIRFRFESGALYRWDLEYRGKSASVD--VDGP----MTLGNLNLMVEAALAGIGIA 241 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + D + + + LV+++ + +PSF + YP L+ F + R+W Sbjct: 242 WVSDQLAAEYLASGRLVQLLAE-WSPSFPGLCLYYPANRHPPTALRLFAQAV----REW 295 >gi|296104957|ref|YP_003615103.1| putative DNA-binding transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059416|gb|ADF64154.1| putative DNA-binding transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 308 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMMHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTAEMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L ++ M A+ YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R + E R N ++I ++ V G+GIA +P Sbjct: 185 ANHSWLEYSVRPDNEFELIAPEGISTRLLPEGRFV---TNDPMTISRWLVAGAGIAYVP 240 >gi|271501940|ref|YP_003334966.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270345495|gb|ACZ78260.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 294 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 137/280 (48%), Gaps = 17/280 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F +VAR GSFT AA +L L+QS +SR I LET +G++L R R L+LT+ G Sbjct: 6 NYNDLYLFMLVAREGSFTKAATRLGLTQSGVSRAIRELETRLGVQLLTRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+R T + L+ L PSG +RI + +L L F L YPDI+ Sbjct: 66 EQLYRTTLTGFDSLDLGLATLAHFRDTPSGTVRINASQHAIDKVLLPKLATFRLHYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ ++I + D IRL + + + + M A P + ++ P + Sbjct: 126 LELISESRFVNIIDERFDAGIRLGPEVDEGMIAVQITPDMEMVVVATPDHFRHYGFPQTP 185 Query: 184 QELDKHNLITF----GDLIPKCMEDFNW-LATVDRPI-GEPRISCLQVNSYLSIMQYCVL 237 +L H I + G L + W L +P+ +P+ + +SY+ L Sbjct: 186 ADLVVHPCIAYQFADGSL-------YQWELWQDGKPLRHKPQGQWVFSDSYMEAAA-ARL 237 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 G G+A +P+ +V + L+R+++ ++ YP Sbjct: 238 GLGLAYVPEELVTPDLEQGTLIRVLQRYSHRLAGLHLYYP 277 >gi|304397938|ref|ZP_07379814.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304354649|gb|EFM19020.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 322 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 134/305 (43%), Gaps = 40/305 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F + SGS + AA QL +Q ++SR++ LE +G+KL R L LT+ G + Sbjct: 11 DLMQTFIRIVESGSLSAAAAQLGTTQPTVSRRLQTLEQRLGLKLILRTTHALKLTDDGER 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ T + EL +S P G LR+ GQ+ L L ++L YP + I+ Sbjct: 71 CYAQARQLLATWHTLEDELTGASADPVGTLRVRAPHAFGQDQLIAPLVDYLHRYPRLNIE 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +L+++ D + DCAI++ P S++ L + AAPH L I++ Sbjct: 131 WMLNDRTPDFMAENVDCAIQVGAPT-DPSVVAVLLAEVPRIVVAAPHLLAQYPPIAQIEQ 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD--------------RPIG---EPRISCLQVNSY 228 L D WLA +P+ PR+S +S Sbjct: 190 L----------------RDLPWLALTSFYRNEVALQKIDDGQPVNLAITPRLSS---DSL 230 Query: 229 LSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 ++ + + G G A++ + V++ + +LV+++ P V+ YP A +L+ Sbjct: 231 YAVRKAALAGMGAAIVSSWAVQEDLADGDLVQLVPAWQAPPLPVWLTYPWASYYPARLQH 290 Query: 286 FRNFI 290 F I Sbjct: 291 FFAMI 295 >gi|296114809|ref|ZP_06833458.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] gi|295978623|gb|EFG85352.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] Length = 342 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V S SFT AAE L+L +SS+S I LE +G +L R R +T T G Sbjct: 5 DLFRVFARVVESASFTRAAETLNLPRSSVSTAIQELEGRLGARLLARTTRSVTPTADGMA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + + P G LR+ +G+ L+ L EFL YP + I+ Sbjct: 65 FYDHCLRLIADVEEAENLFRHDGASPRGLLRVNLPGRIGRLLVAPRLPEFLGRYPGVDIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D DC +R+ P+ S LI R++ + + A+P YL P + Sbjct: 125 LGVTDRAVNLVEDGIDCVLRV-GPLHDSGLIARRMGDLDLVNVASPAYLAQHGVPQVPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H + + +E + W T + P + VNS + + C+ G G+ Sbjct: 184 LAHHLAVRYASPSTGRIEAWEWEEGGTTN---SLPMSGRVTVNSAEASIACCLAGLGLIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ + YP + +++ F +++ Sbjct: 241 VPAYDVAALVQSGALVEVLSQWRAAPLPMALLYPHRKHLSRRIQLFADWL 290 >gi|260753534|ref|YP_003226427.1| LysR family transcriptional regulator [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552897|gb|ACV75843.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 297 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 130/282 (46%), Gaps = 23/282 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L VF VAR SFT AA L SQS++S + LE +GI+L R R + LTE G Sbjct: 5 DLVDLNVFMTVARELSFTRAAAHLGTSQSTLSYTVRRLEERLGIRLLARTTRQVALTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +L +++ ++T EL+ S+ KPSG +R+ + ++ + L YP Sbjct: 65 ERL---LTQIGPAMDTIDTELKSLSMLQEKPSGTVRLTLSEHAANTVVWPVFERILPEYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI ++L +D+ +DI D D +RL I + R + M AP YL+ P Sbjct: 122 DIHVELSVDSGMVDIVADRFDAGVRLGDTIAKDMIATRIGPDLRMVIVGAPEYLRTHTSP 181 Query: 181 LSIQELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQY 234 Q+L H I T G L + W D R+ V S S I++ Sbjct: 182 QRPQDLASHQCINQRMQTSGSL-------YAWELEKDGQEIRVRVDGQLVFSNTSLIVKA 234 Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 + G G+A + + V+++ LV++M D PSF Y+ Y Sbjct: 235 ALAGFGLAFVMEDHVREHLREGKLVQVMAD-WCPSFPGYYLY 275 >gi|261378495|ref|ZP_05983068.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC 14685] gi|269145038|gb|EEZ71456.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC 14685] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 98/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADSLGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + +L+ L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLMRNGVPKTPEEV 184 >gi|323516185|gb|ADX90566.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] Length = 293 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 34/310 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L+ F V+AR+ + T+AA + + S+++R+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E +++++ G++RI T G L L EF + Y Sbjct: 61 PEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD + + +P +I R L + Y + +YL Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQNYLAQNPP 174 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228 +++L +H + + +D + P + CL+ +S Sbjct: 175 IRRLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L+ G+G+A+LP ++ D P L ++E + + T + L++ ++K + Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278 Query: 289 FIFLKARDWK 298 ++ +A ++ Sbjct: 279 YLRKQADKYQ 288 >gi|163858834|ref|YP_001633132.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163262562|emb|CAP44865.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 293 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 18/281 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D LRVF V +GS + AAE L + S +SR +S LET++G+ L R R + LT Sbjct: 1 MALSSDALRVFLAVVDTGSMSAAAEFLGQTASGVSRSLSRLETQLGVTLLTRTTRRMELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + L+ + ++ +P+GKLR+ + + + + + EF YP Sbjct: 61 EEGQLFLQRARGIVGDLDDAEECMRIRRQQPAGKLRVDASAPVMLHCVVPYIAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I ++L +++ +D+ D A+R P+ SSL R L A+P Y+ P Sbjct: 121 EISLELTSNDRIVDLVEHRTDIALRA-GPLSDSSLHARPLRPSRRLVVASPAYVARRGAP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---ISCLQVNSYLSIMQYCVL 237 +++ L +H L+ F P+ + + R G + L +S + Q + Sbjct: 180 ATVEALRQHELLGFTQ--PETLNVWPL-----RHAGGAEFTIVPTLAASSGETQRQLAIN 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYF 271 G GIA L ++++K + LV+++E D + P VY+ Sbjct: 233 GVGIACLSEFMLKADLAEGRLVKLLENACTDYVQPMHAVYY 273 >gi|26989889|ref|NP_745314.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24984798|gb|AAN68778.1|AE016509_11 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 135/287 (47%), Gaps = 12/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A++GSFT AA L L++S++ + I+ LE + ++L R R L+LT++G Sbjct: 11 AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGLVAFER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L+ + + KP+G LR+ + LGQ + L ++L +P+++ + Sbjct: 71 WRQILDDLDEVESTMALRRGKPTGTLRLTAPLSLGQRHVLPVLDQYLKQWPELRADIRFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ P + S L+ R + A+P YL+ P +L H Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQIPGDLYGH 190 Query: 190 NLITF--GD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + ITF G+ +P L + P L ++S +++ G G+ LP Sbjct: 191 DKITFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGLIHLPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 YI D+ NLV ++ P+ + YP + +++ F + + Sbjct: 245 YITGDDLRAGNLVEVLHAYRPPADPIRIVYPSKRHLSPRVRGFIDLL 291 >gi|15801839|ref|NP_287857.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 EDL933] gi|15831164|ref|NP_309937.1| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. Sakai] gi|168749029|ref|ZP_02774051.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4113] gi|168756012|ref|ZP_02781019.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|168762655|ref|ZP_02787662.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|168769413|ref|ZP_02794420.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|168775156|ref|ZP_02800163.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|168782860|ref|ZP_02807867.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|168788343|ref|ZP_02813350.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|168799641|ref|ZP_02824648.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|195937997|ref|ZP_03083379.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EC4024] gi|208811160|ref|ZP_03252993.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|208815505|ref|ZP_03256684.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208819658|ref|ZP_03259978.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209400888|ref|YP_002270389.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|217329169|ref|ZP_03445249.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|254792922|ref|YP_003077759.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|261224322|ref|ZP_05938603.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261257424|ref|ZP_05949957.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|291282424|ref|YP_003499242.1| putative transcriptional regulator LYSR-type [Escherichia coli O55:H7 str. CB9615] gi|12515432|gb|AAG56471.1|AE005373_5 putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EDL933] gi|13361375|dbj|BAB35333.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. Sakai] gi|187769290|gb|EDU33134.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|188016574|gb|EDU54696.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4113] gi|188999724|gb|EDU68710.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|189356781|gb|EDU75200.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|189361538|gb|EDU79957.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|189367066|gb|EDU85482.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|189371842|gb|EDU90258.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|189377969|gb|EDU96385.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|208724666|gb|EDZ74374.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|208732153|gb|EDZ80841.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208739781|gb|EDZ87463.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209162288|gb|ACI39721.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|209771458|gb|ACI84041.1| putative LYSR-type transcriptional regulator [Escherichia coli] gi|209771460|gb|ACI84042.1| putative LYSR-type transcriptional regulator [Escherichia coli] gi|209771462|gb|ACI84043.1| putative LYSR-type transcriptional regulator [Escherichia coli] gi|209771464|gb|ACI84044.1| putative LYSR-type transcriptional regulator [Escherichia coli] gi|209771466|gb|ACI84045.1| putative LYSR-type transcriptional regulator [Escherichia coli] gi|217317608|gb|EEC26036.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|254592322|gb|ACT71683.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|290762297|gb|ADD56258.1| putative transcriptional regulator LYSR-type [Escherichia coli O55:H7 str. CB9615] gi|320189912|gb|EFW64564.1| LysR family transcriptional regulator YcjZ [Escherichia coli O157:H7 str. EC1212] gi|320637232|gb|EFX07058.1| LysR family transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320642599|gb|EFX11847.1| LysR family transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320647952|gb|EFX16660.1| LysR family transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320653554|gb|EFX21659.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659143|gb|EFX26735.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|326341002|gb|EGD64795.1| LysR family transcriptional regulator YcjZ [Escherichia coli O157:H7 str. 1125] gi|326343243|gb|EGD67010.1| LysR family transcriptional regulator YcjZ [Escherichia coli O157:H7 str. 1044] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQLI Sbjct: 69 SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|226945188|ref|YP_002800261.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226720115|gb|ACO79286.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 308 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 30/295 (10%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ R GS A +L+L+ ++S++++ LE +G++L R R ++LT +G Sbjct: 6 ELTFFTLLVRLGSLAATARELNLTPPAVSKRLAQLERRLGVRLLNRTTRSISLTGEGELY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++E + ++ S P G LR+ + G+ + + F+ YPD+++QL Sbjct: 66 LLNAQRILGEIEEMERQVSSSRAAPKGLLRVNAPLGFGRTYVGPAISSFVKRYPDVEVQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ D D IR + + S LI R++ + AAP YL+ C P + ++L Sbjct: 126 QLTDRPINLPNDAIDVGIRFGE-LPDSRLIARRIASNRRLLCAAPAYLQACGRPETPKDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------------CLQVNSYLSIMQY 234 +HN I L D G R+S L N + + Sbjct: 185 MRHNCIV--------------LRQNDAAFGVWRLSRGKQSESIKVRGSLSTNEGEVALNW 230 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G GI + ++ + + L ++E+ TP +Y Y E L + K+ F Sbjct: 231 ALDGHGILMRAEWDLAKYLRSGRLEEVLEEYETPPADIYAVYLERLNLSAKVSFF 285 >gi|330980343|gb|EGH78462.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 302 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 141/290 (48%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGS T A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEARLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE + + + +P G LR++ + L L FL Y ++ + Sbjct: 64 SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYREVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ + +G W ++P+ ++ N+ + + + G GI Sbjct: 183 DLHTHDCLPYGH-----SRQAQWRFQGQEKPLTLNVSGRMRANNGELLRESAIAGLGITY 237 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV +LVR+++D+ T+ YP+ + + ++AF F+ Sbjct: 238 LPTFIVSAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287 >gi|313106107|ref|ZP_07792364.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310878866|gb|EFQ37460.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 291 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF + R + AA LH+ Q+++ R+++ LE +G LF R + G LT Sbjct: 1 MNWDDTRVFLALCREHTLRGAARALHIDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G E+ K+E + +EL + + SG++R++TT L + + L L Sbjct: 61 GE----AAFELAEKMECSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +PDI++ L + +D+ D AIR +P ++ LI RKL + M +A+ YL+ Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P+ + H+L+ + E L PI + R+ + VNS + + Q G Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230 Query: 239 SGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285 G+ LP Y+ + LVR+ + + V+ + L++T +++A Sbjct: 231 LGLCELPLYM-GERDGLVRVWPQRERRRPYEVWMVTHKDLRHTARVRA 277 >gi|260769020|ref|ZP_05877954.1| putative transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|260617050|gb|EEX42235.1| putative transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|315180759|gb|ADT87673.1| AphB/LysR family protein [Vibrio furnissii NCTC 11218] Length = 266 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 9/263 (3%) Query: 32 SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91 ++I+R+I LE + ++L RHAR L+LTE G + S + +L + E+ + Sbjct: 5 ATITRRIQALEDSLNLRLLNRHARKLSLTEAGERFFSDCSPLLQRLASMAEEITDECRGA 64 Query: 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151 SGK++I++ +L + ++ EF+ YP+I I+L N + D R+ P + Sbjct: 65 SGKIKISSPYNLTKRMMMPMFNEFMKQYPEINIELTTSNHADQLDPTEWDVIFRV-GPQR 123 Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211 SSLI RK+ + A+P YL P +EL +H+L+ L+ + + + Sbjct: 124 DSSLIARKISEVKDILVASPDYLTKHPAPTHAEELSRHSLLKGYPLLKWQLSNSKGETVI 183 Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFT 268 + G Q N+ + C G GI L+PD ++++ + +LVR++ D Sbjct: 184 NGDKGR-----FQANALNVVRSACSEGLGITLMPDVMLREFIADGSLVRVLSDWSANPRD 238 Query: 269 VYFCYPEALKNTGKLKAFRNFIF 291 +Y Y K++ F +F+ Sbjct: 239 IYMLYNHKDHLPEKVRLFIDFVI 261 >gi|262402608|ref|ZP_06079169.1| transcriptional regulator [Vibrio sp. RC586] gi|262351390|gb|EEZ00523.1| transcriptional regulator [Vibrio sp. RC586] Length = 253 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 9/254 (3%) Query: 41 LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100 +E + ++L RHAR LTLTE G + ++ S + +L + E+ + SG++RI+ Sbjct: 1 MEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAP 60 Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160 +L + ++ F+ YPDI I+L++ N+ D+ D R+ P + SSLI RK+ Sbjct: 61 SNLTKRMMMPMFNTFMRKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKI 119 Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI 220 + A+P YL + +P +EL +H L+ L+ + + V+ G + Sbjct: 120 GEVKDILVASPTYLADHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETIVNTDRGRFQA 179 Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEAL 277 S L V + C G GI L+PD ++++ + +L++++ D + +Y Y Sbjct: 180 SALNV-----VRSACSEGLGITLMPDVMLREFLSDGSLIQVLSDWSSNPRDIYMLYNHKD 234 Query: 278 KNTGKLKAFRNFIF 291 K++ F +F+ Sbjct: 235 HQPEKVRLFIDFVI 248 >gi|163746312|ref|ZP_02153670.1| transcriptional regulator, LysR family, putative [Oceanibulbus indolifex HEL-45] gi|161380197|gb|EDQ04608.1| transcriptional regulator, LysR family, putative [Oceanibulbus indolifex HEL-45] Length = 302 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 144/306 (47%), Gaps = 19/306 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ +D +R F V GS + AA +S + S +I+ LE +G++LF R R L+ T Sbjct: 1 MSY-FDNIRTFVRVYELGSMSAAARDQRVSPAVASARITQLEGHLGVRLFQRTTRSLSAT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG + ++ + + +++ + P G L +A + +G+ L+ ++ EF YP Sbjct: 60 EQGRIFYDGACKILASVAEAEAGIEDVTDNPRGTLHVAAPLGVGRRLIAPHVPEFAETYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L L ++ +D++ + D A L +P + S+L RK+ A+P Y+ P Sbjct: 120 LVDVRLRLSDRKLDLTAEGLDVAFFLGRP-EDSTLRIRKVADCERVLCASPAYVAAHGHP 178 Query: 181 LSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYC 235 S E+D+ HN + P E F W + P G + + + + + Sbjct: 179 RSGAEIDRGQHNCLNL--RFPGATE-FQW--QLQGPEGAAKYDVRGRFESDDGDVLTDWA 233 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFC--YPEALKNTGKLKAFRNFI 290 + G+GIA+ P + + + + LVR++ED TP V Y K + F +F+ Sbjct: 234 LAGAGIAMKPLFEIAEHLRSGALVRVVED--TPPLPVQMACLYTHRRHQDPKTRLFMDFM 291 Query: 291 FLKARD 296 + D Sbjct: 292 IARMED 297 >gi|120610047|ref|YP_969725.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120588511|gb|ABM31951.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 140/287 (48%), Gaps = 14/287 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R++ V +G+FT AA+ L L ++++++ I LE + ++L R R +T+T G+ + Sbjct: 7 MRIYARVVEAGTFTRAADSLQLPKATVTKHIQALEARLRVRLLNRTTRRVTVTPDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + PSG+LR+ + + L+ +L+EF YPDIQ+ L Sbjct: 67 DRAVRLLADFDDIEASMTHARATPSGRLRVDVGTAMARLLIIPHLEEFHARYPDIQLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DC IR + + SL+ R++ + A+P YL+ P Q LD Sbjct: 127 VSDRIVDLIGDNVDCVIRGGE-LTDQSLVARRIGLLEFITVASPAYLERHGTP--AQPLD 183 Query: 188 KHN----LITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 N +I F + +F+ V G +++ + N+YL+ + + G G+ Sbjct: 184 LENGHRSVIYFSPRTSRRYPLEFHRDGEVIEIGGPSQLAVNESNAYLAAL---LAGRGVG 240 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + + +LVR++ + P VY YP + +++AF Sbjct: 241 QVTTLQAQGHLERGDLVRLLPEWSHPLLPVYVVYPPNRHLSARVRAF 287 >gi|289626642|ref|ZP_06459596.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649222|ref|ZP_06480565.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. aesculi str. 2250] gi|330869393|gb|EGH04102.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 297 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L ++ S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPVYFERHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R+S NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVSGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +PD + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|209809096|ref|YP_002264634.1| HTH-type transcriptional regulator, LysR family [Aliivibrio salmonicida LFI1238] gi|208010658|emb|CAQ81045.1| HTH-type transcriptional regulator, LysR family [Aliivibrio salmonicida LFI1238] Length = 293 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 131/258 (50%), Gaps = 9/258 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+ F + +G+ + + + SSISRQ++ LE ++G++L R++R + LTE G + Sbjct: 4 RLQYFNTIVETGNMSETSRIFDVQPSSISRQLAVLENDLGVRLINRNSRNIALTEAGHRF 63 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ L+ + + + PSG L ++ T+ G+ ++ L +F YPD+ +++ Sbjct: 64 YSYSKQIILDLDEAKRVINDLQQVPSGMLNLSVTVGFGEAVIIPLLPKFKAAYPDVDLRV 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + +D+ + D IR + SS+I +L T A+P YLK PL+I +L Sbjct: 124 EITERIVDLIEENTDVVIR-SGNLTDSSMIATQLATNDFILCASPMYLKENGTPLAIDDL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I +G NW ++ + ++VN+ Q + G+AL+P Sbjct: 183 VNYLCIKYG-----YAGWGNWFLKGEKLEKIEIENSIEVNTVNGQKQLVLNHGGLALIPH 237 Query: 247 YIVK---DNPNLVRIMED 261 + VK +N +LV++M D Sbjct: 238 WAVKNELENGDLVQVMRD 255 >gi|194364693|ref|YP_002027303.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347497|gb|ACF50620.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 314 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A +GS AA L LS S++ ++I+ LE E+G +LF R R + LT++G L Sbjct: 10 LLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQELGTRLFQRTTRRVHLTDEGELLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L Q +L + PSG LRI +G L L F YP +Q++L Sbjct: 70 QRCRRALDELSEAQADLAQRQHAPSGLLRIGLPT-IGYRFLLPVLPGFQQRYPQVQLELD 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR + + SSL R+L AAP YL+ P + EL Sbjct: 129 FNDRIVDVVSEGLDAVIRSGE-LADSSLTARRLGGFRFILSAAPGYLQAHGTPGDVSELR 187 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + F P + W L ++ G + + N+ +++ + G+A +PD Sbjct: 188 LHTALRF--RYPTTGKLHPWQLPGIEGDAGARLPTAMTCNNMEAVLAAAIGCMGLAWMPD 245 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 ++ D + L R++ + T +P + +L+ F ++ Sbjct: 246 FLAADALADGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDY 291 >gi|332186033|ref|ZP_08387779.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] gi|332013848|gb|EGI55907.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] Length = 296 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 130/283 (45%), Gaps = 12/283 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V GS + AA L ++Q SI+R I LE E+G KLF R RGL+ T+ Sbjct: 7 WDVYRSFAAVLCEGSLSGAARALGMTQPSIARHIDALEQELGGKLFVRSQRGLSPTD--- 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 + H + + + + S +P SG +RI+ + +G L L + +P Sbjct: 64 RAHALRPHAEALVNAARALRRTGSGEPDHVSGVVRISASQAVGVMHLPPILTDLRRAHPA 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+L L ++ D+ AD A+R+ +P Q +L+ R++ + + +A YL P Sbjct: 124 LTIELALSDEPDDLLQRRADIAVRMFEPAQ-QALVARQVGAVRLGFHAHRDYLDRRGIPG 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++ EL H+LI F L +DR + L+V+S + G GI Sbjct: 183 TLAELRGHDLIGFDTQTNFIRAAMRHLPGIDRS-----MFALRVDSDAAQFAAIRAGFGI 237 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + I + +P LVRI+ D + ++ E L+ + + Sbjct: 238 GICQTAIARRDPALVRILPDALDLPLPLWIVMHEDLRRISRCR 280 >gi|83746962|ref|ZP_00944008.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|83726382|gb|EAP73514.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 301 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 30/305 (9%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V +G+FT AA QL +S + + + LET +G +L R R +LT+ Sbjct: 6 DKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 65 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V ++ + ++ +PSG LR++ G ++ F +P + Sbjct: 66 GRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 125 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D++ + D A+R+ P+ + L+ + L M A+P YL +P + Sbjct: 126 RVELDLSNRMVDLADEGFDLAVRI-GPLGDADLVAKPLCAYRMAICASPDYLARHGQPET 184 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIG---EPRISCLQVNSYLSIM 232 +L H +C+ W L+ D P +P SC N + Sbjct: 185 PADLPAH----------RCLSHMVWNRRNAWQLSGWDGPTSWRDDPAFSC---NDGHGLR 231 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G+G+ L P+ +V ++ LVR+++ ++ Y + + KL F + Sbjct: 232 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDH 291 Query: 290 IFLKA 294 + A Sbjct: 292 LLQHA 296 >gi|15596335|ref|NP_249829.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100591|ref|ZP_01364509.1| hypothetical protein PaerPA_01001616 [Pseudomonas aeruginosa PACS2] gi|218892896|ref|YP_002441765.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234272|ref|ZP_04927595.1| hypothetical protein PACG_00110 [Pseudomonas aeruginosa C3719] gi|9947058|gb|AAG04527.1|AE004543_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126166203|gb|EAZ51714.1| hypothetical protein PACG_00110 [Pseudomonas aeruginosa C3719] gi|218773124|emb|CAW28936.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 291 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 18/289 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF + R + AA LH+ Q+++ R+++ LE +G LF R + G LT Sbjct: 1 MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G E+ K+E + +EL + + SG++R++TT L + + L L Sbjct: 61 GE----AAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +PDI++ L + +D+ D AIR +P ++ LI RKL + M +A+ YL+ Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P+ + H+L+ + E L PI + R+ + VNS + + Q G Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230 Query: 239 SGIALLPDYIVKDNPNLVRI--MEDVITPSFTVYFCYPEALKNTGKLKA 285 G+ LP Y+ + LVR+ + P + V+ + L++T +++A Sbjct: 231 LGLCELPLYM-GERDGLVRVWPQRERRRP-YEVWMVTHKDLRHTARVRA 277 >gi|261212768|ref|ZP_05927052.1| transcriptional regulator LysR family [Vibrio sp. RC341] gi|260837833|gb|EEX64510.1| transcriptional regulator LysR family [Vibrio sp. RC341] Length = 295 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 17/280 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+IQLI + R + S S L YA+PHYL P Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEYQAGFYASPHYLAKQGTPQ 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 ++QEL +HN++ +G+ N V G+ RI+ + ++ G Sbjct: 181 TLQELTEHNVLCWGE---------NTFREVKTSQGK-RITLTGNFATTNPEALFYAGKAG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 GI + ++K+ LVRI+ DV TV+ YP+ Sbjct: 231 MGIIVTGHIMIKEELKQGTLVRILPDVTIDQTTVFAYYPK 270 >gi|253690380|ref|YP_003019570.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756958|gb|ACT15034.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 295 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 17/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF + GSF A E L +S +++Q++ LE +G++L R R +LT+ G + + Sbjct: 7 MSVFVKASELGSFAAAGEALGISPQMVAKQVAWLEARLGVRLLNRTTRRQSLTDIGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E +E V PSG +++ + G +LL + +L YPD QI L Sbjct: 67 ERCKVVLAEAEDADAVAREMQVTPSGIIQVNAPVTWGSHLLAPFITHYLARYPDTQIALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D D + IR+ + + SS++ L + A A+P YL P + L Sbjct: 127 LNDRMVDPIEDGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLAREGVPEAPASLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +H + +G + W+ + RP G L N + +++ + G GI Sbjct: 186 RHACLIYG--VRTAATSCRWVFQKEGKSEEVRPQGR-----LFANDWNALLHAAIEGYGI 238 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P+ +++ D LV+++ D P+ V+ P ++ K+K F + + Sbjct: 239 TLGPEAVLRKEIDRGRLVQVLSDYDGPARPVHVMVPMGRRSAVKIKTFVDAV 290 >gi|317405038|gb|EFV85388.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 299 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 139/307 (45%), Gaps = 31/307 (10%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F V ++ SF+ AA L L +SS++ I LE +G L R R L+LTE Sbjct: 2 DKLQAMTTFVRVVQAQSFSKAAATLALPRSSVTTTIKQLEALLGTPLLRRTTRSLSLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ + + ++ + L + P G++R+ +G+ L+ L+EF YPDI Sbjct: 62 GARYYAACQAILAQIAEAEHALAADAQTPRGRVRVDMPGAIGRALVVPRLREFEARYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L+++ +D+ + DCAIR + S+L+ R L + A+P YL EP S Sbjct: 122 ELVLGLNDRPLDLVHEGIDCAIR-SGALADSTLVARPLGRLSWLTCASPLYLARFGEPDS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSY------- 228 + L H ++ + L +W VD GE R + + +Y Sbjct: 181 VAALAAHRVVNY--LSNASGRPLDWRFRVD---GEDVALALPGRYAVNETEAYLHCGLEG 235 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L ++Q L +GI L + L ++ + YP+A + T +K F Sbjct: 236 LGLIQLSELAAGIYL-------RSGRLREVLAQARCAPVPIAIVYPQA-RATAAVKTFVE 287 Query: 289 FIFLKAR 295 ++ AR Sbjct: 288 WVITIAR 294 >gi|317053070|ref|YP_004119424.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316953397|gb|ADU72868.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 295 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++ F VAR SFT AA L +S S++S + LE +G++L R R + TE G K Sbjct: 2 NDIQAFIAVARERSFTKAAAMLGVSPSALSHTMRNLEERIGVRLLARTTRHVAPTEAGEK 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++ ++ + + E P+G +RI + + + LL+ L FL YPDI ++ Sbjct: 62 LLLSVAPLFEQINSEIERIAELRATPAGNIRITCSDNAAEELLRPMLPAFLAQYPDISVE 121 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + P Y + PL+ Q+ Sbjct: 122 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRMGPDWRLVVVGTPEYFQANPVPLTPQD 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H I G + E + + P IS NS L +M + G G Sbjct: 182 LARHRCINIRHSPAGSVYAWEFEKEGRKLNIR--VNGPLIS----NSILHVMNGALDGIG 235 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A +PD + + + LV ++ D +P F + Y +NT AF F+ Sbjct: 236 LAYVPDAMAQPHIAAGRLVEVLSD-WSPLFEGFHLYYPNRRNTS--SAFAAFV 285 >gi|304411266|ref|ZP_07392881.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307306549|ref|ZP_07586292.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|304350459|gb|EFM14862.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306910840|gb|EFN41268.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 329 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 103/189 (54%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI +L + F+ ++P + ++ Sbjct: 64 FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I ++ +D+ D A + + + L+ R + T + YA+P YL P + +E Sbjct: 124 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAAHGTPKTPKE 183 Query: 186 LDKHNLITF 194 ++ HN+ F Sbjct: 184 IEAHNVSMF 192 >gi|302186195|ref|ZP_07262868.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae 642] Length = 305 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 136/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + LE + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLEDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PLS+Q Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQQHGTPLSLQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL +H +I + ++ VD E +C + VNS + C G G+ Sbjct: 183 ELAQHQVIEYFSTSTGKRNGLEFM--VDGMDVEHASACSIAVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V LV ++ P + YP + + +++ F +++ Sbjct: 241 VPRYHVATQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWL 290 >gi|156975122|ref|YP_001446029.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116] gi|156526716|gb|ABU71802.1| hypothetical protein VIBHAR_02849 [Vibrio harveyi ATCC BAA-1116] Length = 301 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L R R L LT G + + Sbjct: 10 IRSFVMIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ I + + + G +R+ +G++++ + EF+L YP+I + L Sbjct: 70 QECEKALRDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYPNITVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D AIR+ + ++ + + RKL+ I M A+P+YLK EP++ +EL Sbjct: 130 DFSSPRIDLIEDQFDVAIRMGE-LEDTGFVARKLMMIDMVTLASPNYLKTHGEPVTPKEL 188 Query: 187 DKHNLIT 193 KH +T Sbjct: 189 AKHRTLT 195 >gi|78063199|ref|YP_373107.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971084|gb|ABB12463.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 126/292 (43%), Gaps = 15/292 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F R SFT AA +LHL+QS+ISRQI LE +G LF R R L LT G + Sbjct: 14 AFEAAVRHASFTRAATELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY--- 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQLI 127 +E H+L T E +KP G L + G L L L EF YPDI+++LI Sbjct: 71 -AEQVHRLLTQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPEFRAAYPDIKLRLI 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +S D + + + R+L + AP YL L +L Sbjct: 130 VRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAADLA 187 Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ D + M W +DR +P+ + +NSY I+Q +LG GI+L Sbjct: 188 NETLLRLEDGQRQWMSWSEWFDQNDIDRQKAQPQD--ITINSYPQIVQMTILGQGISLGW 245 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 Y++ + LVR+ + + Y P + F ++F +A Sbjct: 246 RYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNHAARLFTRWLFEQA 297 >gi|171319617|ref|ZP_02908712.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171095149|gb|EDT40153.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 310 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 11/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V G+F A+E + ++ +SR I+ LE ++ I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE S+ GKLR+ + + +L L F+ +P+++I+LI Sbjct: 74 VMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGQQLDAFMDAHPELEIELIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187 + D+ MD D A+R +P ++S+LI RKL+ + A+P Y+ P ++L+ Sbjct: 134 DSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPSYVARRGRPAKPEDLESR 192 Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H I F + P+ + F W R + + R L VN +++ C+ GSGIA Sbjct: 193 SHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LL + N L+ + + F +Y YP K +AF +F+ Sbjct: 250 LLGAEPLIANGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFV 297 >gi|28898782|ref|NP_798387.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260364144|ref|ZP_05776850.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] gi|260877227|ref|ZP_05889582.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|260897827|ref|ZP_05906323.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|28807001|dbj|BAC60271.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus RIMD 2210633] gi|308087631|gb|EFO37326.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308090284|gb|EFO39979.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308115202|gb|EFO52742.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] Length = 298 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 103/187 (55%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + + G +R+ +G++++ + EF+ YP++ I L Sbjct: 70 HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPNVSIDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D A R+ + + + + RKL+T+ M A+P Y++ P+ +EL Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPIHPKEL 188 Query: 187 DKHNLIT 193 +H +T Sbjct: 189 AEHRTLT 195 >gi|90426052|ref|YP_534422.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108066|gb|ABD90103.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 315 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 11/292 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F GSF+ AA +L + S+ISR I+ LE+++G L R R L LTE G+ Sbjct: 7 MRAFIRTVELGSFSLAATELDVKVSTISRHITALESDLGAALLNRSTRRLHLTEAGTLFF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +E + + P G LRI+ G+ + ++K+F+ YP+I+I Sbjct: 67 DRATQILLAVEEARAATASLNESPRGVLRISMPTAFGRLHVMPHIKDFVAEYPEIRIAAT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186 L + +D+ D A+R+ + SSL+ R+L + A+P +L+ C EP+S +++ Sbjct: 127 LTDATVDLIETGDDVAVRI-GSLTDSSLVARRLASHRRILVASPGFLRQC-EPISRPRDV 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + F C + P+ ++ N ++ + G GIALLP Sbjct: 185 ARQQCLIFTLQSGDCWYARRSDDSSTEPLQIAVSGNMRANDSEALQGAALAGLGIALLPS 244 Query: 247 YIVKDNPNLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ R++ + P ++ YP + K+++F +F+ Sbjct: 245 WLVGDDLRAGRLVVPLAGWDWFAARGPEPAIWGVYPPKKIVSPKVRSFIDFL 296 >gi|313647629|gb|EFS12079.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella flexneri 2a str. 2457T] gi|332750051|gb|EGJ80463.1| hypothetical protein SFK671_4706 [Shigella flexneri K-671] gi|332750207|gb|EGJ80618.1| hypothetical protein SF434370_4270 [Shigella flexneri 4343-70] gi|332751279|gb|EGJ81682.1| hypothetical protein SF274771_4726 [Shigella flexneri 2747-71] gi|332763476|gb|EGJ93715.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2930-71] gi|332996216|gb|EGK15843.1| hypothetical protein SFVA6_4878 [Shigella flexneri VA-6] gi|332996918|gb|EGK16537.1| hypothetical protein SFK272_4797 [Shigella flexneri K-272] gi|332997076|gb|EGK16692.1| hypothetical protein SFK218_5164 [Shigella flexneri K-218] gi|333012504|gb|EGK31885.1| hypothetical protein SFK304_4953 [Shigella flexneri K-304] gi|333013395|gb|EGK32767.1| hypothetical protein SFK227_4724 [Shigella flexneri K-227] Length = 299 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL +P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHNRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|163740220|ref|ZP_02147614.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161386078|gb|EDQ10453.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] Length = 317 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 141/288 (48%), Gaps = 11/288 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L VF +A++GS T AA+++ L +S++SR++S LE +G++L R+ R LT G Sbjct: 24 DLNDLAVFAAIAQAGSITGAAKKMKLPKSNVSRRLSRLEDRLGVQLIERNTRSSRLTSIG 83 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + ++ S +P+G+LR++ ++ +GQ ++ + + +P +Q Sbjct: 84 IRYADYCRLMVEEANAADAVVETSLGEPAGELRVSASVLVGQQIIAPAIAAYGQQFPKVQ 143 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L N ++ D D A R+ KP SS++ + + T YA+P YL++ P Sbjct: 144 VILELTNMRANLIEDGFDLAFRIGEKP--DSSMMSQAIGTFPFGLYASPGYLRSSGNPQL 201 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 ++L H + ++ + W D + + + + VN +L++ + G GI Sbjct: 202 PRDLQHHRCL----IMRSGFKTSRWKLQRDGEVIDFAANGDVVVNDFLTLRNLAIAGGGI 257 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A+LP Y V + L ++ + S + YP T K +AF Sbjct: 258 AMLPAYAVHAECASSLLSAVLPNWSASSVPLSAIYPSRRGATLKQRAF 305 >gi|121594366|ref|YP_986262.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120606446|gb|ABM42186.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 24/298 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +AR+G+ AA + + ++++R+I LE ++G LF R A G LTE Sbjct: 1 MDWDNLRYFLELARTGTLAGAARRTGVEHTTVARRIQALEKQMGAPLFAREAAGHRLTET 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESS------VKPSGKLRIATTIDLGQNLLQGNLKEFL 116 G L +E + ++ +S PSG +R+ T G +L +L Sbjct: 61 GRHL----LPAVEAMEAAVLGVERASPANSPGAGPSGLVRVGATEGFGTVVLAPHLARLT 116 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 +P + I L+ + + +S AD I L +P + S+I KL + Y YL Sbjct: 117 QKHPHLSIDLLALPRMLHLSRREADIVISLERP-KRGSVIVTKLADYTLRLYGQREYL-- 173 Query: 177 CREPLSI--QELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 R PL ++L H I++ D L K ++ + L +R L+ S + Sbjct: 174 ARRPLVAKREDLRHHAFISYVDDLLFTKELQFIDQLYPPER-------FALRSTSITAQY 226 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+G+A+LP ++ +P L R++ + T + P K+ +++A F+ Sbjct: 227 EAVRAGAGLAVLPAFLADRDPVLARVLPHEAEFTRTFWMSMPAESKHLARMQAVWAFL 284 >gi|49083088|gb|AAT50944.1| PA1138 [synthetic construct] Length = 292 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 18/289 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF + R + AA LH+ Q+++ R+++ LE +G LF R + G LT Sbjct: 1 MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G E+ K+E + +EL + + SG++R++TT L + + L L Sbjct: 61 GE----AAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +PDI++ L + +D+ D AIR +P ++ LI RKL + M +A+ YL+ Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P+ + H+L+ + E L PI + R+ + VNS + + Q G Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230 Query: 239 SGIALLPDYIVKDNPNLVRI--MEDVITPSFTVYFCYPEALKNTGKLKA 285 G+ LP Y+ + LVR+ + P + V+ + L++T +++A Sbjct: 231 LGLCELPLYM-GERDGLVRVWPQRERRRP-YEVWMVTHKDLRHTARVRA 277 >gi|253991250|ref|YP_003042606.1| lysr-family transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638298|emb|CAR66921.1| lysr-family transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782700|emb|CAQ85865.1| lysr-family transcriptional regulator [Photorhabdus asymbiotica] Length = 321 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 11/250 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S WD +R+F VAR+G+ + AA L + +++SR++ LE G+ LF RH G LTE Sbjct: 21 SLVWDDIRIFLAVARTGTISRAANLLKIGVATVSRRVERLEATFGMPLFLRHQAGYQLTE 80 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G++L + T +E ++ ++ SGK+RIATT L +L+ +L YPD Sbjct: 81 DGTELLEKAKNMEMAANTLLLE-ADTRMEISGKVRIATTETLANSLIIPSLPSLRKNYPD 139 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + +++I D +++ AD A+R+ +P + I R+L + Y + YL Sbjct: 140 LTLEIITDIHTVNLHRRDADLALRIIRPERGHVTI-RQLGILGFGLYGSEDYLATHSSGA 198 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239 E + N I + D + F W+ + RP+ ++ +++ +S ++ G Sbjct: 199 LRGEYENDNFIGWTDDQSQLFT-FKWVEQILKGRPLS---VATTSLSAQISAVKA---GL 251 Query: 240 GIALLPDYIV 249 G+A+LP ++ Sbjct: 252 GLAVLPHFVA 261 >gi|28901352|ref|NP_801007.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153835957|ref|ZP_01988624.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|260362908|ref|ZP_05775777.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] gi|260880195|ref|ZP_05892550.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|260895312|ref|ZP_05903808.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|260901137|ref|ZP_05909532.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|28809899|dbj|BAC62840.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750711|gb|EDM61456.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|308085644|gb|EFO35339.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308092481|gb|EFO42176.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308109354|gb|EFO46894.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|308112024|gb|EFO49564.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] Length = 299 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 8/283 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE +L+ S +S++++ LE E+G +L YR R LTLTE G Sbjct: 4 DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D D IR ++ SSLI R ++ A+P Y+ +P+ + Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L HN + + E W D R+S C ++ ++ + + G GIA + Sbjct: 183 LTSHNCLQYAYQTTGASE---WEFKSDEGNYIVRVSGCFSTDNATALRKAALGGHGIAYV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 P +V N LV I +++ +Y YP + K+K Sbjct: 240 PRCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282 >gi|253990736|ref|YP_003042092.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782186|emb|CAQ85350.1| Transcriptional regulator [Photorhabdus asymbiotica] Length = 301 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 144/295 (48%), Gaps = 14/295 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR VF V GSF AA+ L LS++++S+ I+ LE + L R R + +T Sbjct: 5 DKLRAISVFRRVVELGSFKAAAQDLGLSKAAVSKNINQLEEYLKSPLINRTTRNMHITAN 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +LE + + E+S +G ++++ + +G L + +F+ +P I Sbjct: 65 GRNYYHQVCNILDELENADLSVMETSHTLTGSIKVSIPMSMGLKALNPLICQFMHTHPSI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++++ +K ID+ D AIR + SSL RKL+ + A+P Y++ + L Sbjct: 125 SVEVVMIDKYIDLIEHGIDVAIRGGGELSDSSLRSRKLIKVPRVLCASPAYIEASEKILI 184 Query: 183 IQELDKHNLITFG-DLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + L HN + + P+ + N + VD G VN+ L++ Q + G Sbjct: 185 PENLTSHNCLVYSLSSSPRRWIFHNQNDVKVVDLKPG-----TYVVNNGLALKQAALSGH 239 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+ LLP+ +V D + LVR++ + +Y P +++ K +AF +F+ Sbjct: 240 GVILLPELLVTDELLSGKLVRLLPEWEADMQALYAIQPFHKEHSNKTRAFIDFLI 294 >gi|254473562|ref|ZP_05086958.1| transcriptional regulator [Pseudovibrio sp. JE062] gi|211957274|gb|EEA92478.1| transcriptional regulator [Pseudovibrio sp. JE062] Length = 305 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 17/292 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 ++ ++LR F V SGSFT AA +L L ++ +S Q++ LE E+G L R R L +TE Sbjct: 4 YNLNRLRHFVEVVESGSFTAAARKLGLGKAIVSHQVAKLEEELGAALLVRTTRSLQVTEA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +E+ + E ELQ+ PSG L + D G+ ++ L +P I Sbjct: 64 GQRFYESAAEILEQAERAAQELQQEQDVPSGLLTVTAPEDYGRYVVAKALMRLRKKHPKI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP---HYLKNCRE 179 Q+ + ++ +D + D +IR+ ++ SS I RK+ T + A+P L Sbjct: 124 QVNAVFTDEKLDQLKEKIDVSIRV-GWLEDSSAIARKIGTFQQYTVASPSVVEALGPVET 182 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLG 238 PL +Q + +P M W + D + +V + ++ + C LG Sbjct: 183 PLDLQ----GKPWIYHRKLPSEM---TWRSE-DEEEACFTLQAPEVTVWNTLTSHACALG 234 Query: 239 -SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI +LP + ++D+ L RI+ + +Y +P + K KAF Sbjct: 235 DGGICILPSFQIRDDLAAGRLQRILPNWHQKEGGIYALFPNSRFRPAKTKAF 286 >gi|37525157|ref|NP_928501.1| hypothetical protein plu1189 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784583|emb|CAE13483.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 304 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 13/297 (4%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +VF ++ GS A+E+L +S++ +SR ++ +E G++L +R R ++LT G ++ Sbjct: 8 QVFTIIVEQGSMIAASERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGEIAYQ 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ++ E + + + SG LRI+++ L + L + EF+ +YP I I + + Sbjct: 68 RSRKLLQLSEEIPVHQPVEAQELSGLLRISSSQSLAVSALSVAIPEFMQIYPQIAIDMQI 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 NK I++ + D A+R+ ++ +LI R L T H AAP YL P +L Sbjct: 128 SNKAINLVEERIDLALRITNNLE-PNLIARPLSTCHSVVCAAPCYLAGKMLPQKPADLAL 186 Query: 189 HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +T+ + K + WL P L N + +M+ + G+GIA+ P Y Sbjct: 187 HNCMTY-NFFGKSL----WLFEHRGEKYSVPVSGTLSANESMVLMEATLQGAGIAMQPYY 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 V + L++++ + + +Y Y L+A +F+ F + W+ Sbjct: 242 SVASHLASGKLIQLLPEYRPQAMGIYGIYASRQNMPATLRALLDFLVQWFASSPYWQ 298 >gi|296314843|ref|ZP_06864784.1| transcriptional regulator, LysR family [Neisseria polysaccharea ATCC 43768] gi|296838343|gb|EFH22281.1| transcriptional regulator, LysR family [Neisseria polysaccharea ATCC 43768] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 1/181 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + +L+ L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLIRNGVPKTPEEVT 185 Query: 188 K 188 + Sbjct: 186 R 186 >gi|281180559|dbj|BAI56889.1| putative transcriptional regulator [Escherichia coli SE15] Length = 323 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ S L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|148260442|ref|YP_001234569.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326403636|ref|YP_004283718.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146402123|gb|ABQ30650.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5] gi|325050498|dbj|BAJ80836.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 322 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 136/299 (45%), Gaps = 19/299 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +AR G+ + AA +L + QS++ R+++ LE G++L R RG LT Sbjct: 1 MDWDDLRSFLAIAREGTLSAAARRLGVRQSTMGRRLAALEARAGVRLLERTPRGFRLTAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G +EV ++ET + + + V+ G +R+ T D ++L L + Sbjct: 61 GEAAR---AEV-ERMETAALAAERAVSGRDVRLEGTVRLTTVSDFAPSVLMPALADLADR 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP I ++LI D++ + ++ AD A+RL +P + SL R++ T+ YA+ YL Sbjct: 117 YPGIVVELIADDRTLSLAAREADLALRLARP-RGQSLRGRRIGTVSFGLYASETYLAARS 175 Query: 179 EPL-SIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P + + H LI D E D L+ +S +S + Sbjct: 176 VPAWPGSQGEGHRLILSRDETGAYPELDALAAMAPK------AAVALRTDSRVSQLAAAR 229 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G GIA+L ++ L RI + P ++ E ++ +++A + + + R Sbjct: 230 AGLGIAVLGHHVAA-GAGLTRIDSPPL-PEREIWLVQHEDTRDVPRIRAVADALAARMR 286 >gi|90412929|ref|ZP_01220928.1| putative transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90326108|gb|EAS42542.1| putative transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 21/264 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF +V GS+T AA++L ++ S++S+QIS LE + +KL R R L ++E G+K++ Sbjct: 13 LAVFIIVVDEGSYTAAAKKLGVTPSALSKQISRLEKALSVKLLERTTRKLMISESGTKIY 72 Query: 68 RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +V +E+ S PSG L +A +LQ + FL YPDIQ++L Sbjct: 73 E-QCKVMTNAAKQAVEIASSEHTIPSGTLTVAAPKAFLSIVLQPLVTPFLTQYPDIQLKL 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +IDI + D RL + S +L+ +K+ +++ A+P YL EP +L Sbjct: 132 KASDGEIDILSEGIDIVFRLTEH-PSEALVNKKIGKVNLALCASPEYLALRGEPQLPSDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240 +H+ I G+ + DF I + + V ++ ++ + G G Sbjct: 191 RQHDCIYLGETTTDHIWDF---------IKDDEFQSVSVTGRYAVNHSQMRLKGVIDGLG 241 Query: 241 IALLPDYIVK---DNPNLVRIMED 261 I + PD+++K +N ++ +++D Sbjct: 242 IGIFPDFVIKQALENGSVKEVLKD 265 >gi|241764119|ref|ZP_04762155.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241366525|gb|EER61018.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 298 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F V R GSFT AA L +SQS++S + GLE +G++L R R + TE G Sbjct: 5 NFNDLIAFVTVTREGSFTKAAAVLGVSQSALSHTMRGLEERLGVRLLTRTTRSIAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + +++ + E KP+G +RI+ +L L + L YPDI+ Sbjct: 65 ERLFQSIAPRFEEIDAELTAVSEFRDKPAGAIRISAAEHAAITVLYPKLSKVLPDYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ +D DI D +RL + + R + M +P Y +P + Sbjct: 125 AEINIDYALTDIVAQRYDAGVRLGDQVAKDMIAVRIGPDLRMAVVGSPAYFSARNQPRNP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 +L HN I +P + W + R R+ V NS +++ + G G+A Sbjct: 185 HDLADHNCIN--RRLPTYGGIYAWELSNGRQELNVRVEGQWVFNSSSPVLRAALDGCGLA 242 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 LP+ +V ++ L+R+++ P F Y Y Sbjct: 243 FLPEDMVLEHIAAGRLIRVLDAWCQP-FPGYHLY 275 >gi|116253518|ref|YP_769356.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258166|emb|CAK09267.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 6/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L + +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE L S PSG+LR+ ++ L +F YPDI+I L Sbjct: 67 ERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R P SLI R++ + M A+P Y++ P ++L+ Sbjct: 127 VGDRTVDYLAENVDCALRAGTP-ADQSLIARRVSEVEMITCASPDYIQKFGMPERPEDLE 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + F + + PR VN + + + G GIA +P Sbjct: 186 ADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRY-IASVNDSRTYLTAALTGLGIAQVPI 244 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LVR++ D +Y YP + K++ F +++ Sbjct: 245 FMAREPMARGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWL 291 >gi|167577310|ref|ZP_02370184.1| LysR-family transcriptional regulator [Burkholderia thailandensis TXDOH] Length = 306 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L+EF+ ++P ++++ Sbjct: 65 FYARCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALAVVAPALREFMSMHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 L D+ D D AIRL + P + + + + A A H + Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPFRGVCIDTYDVRPVASPALLAAHGVARIE 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P L ++ + + G Sbjct: 185 SPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFARQG 241 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 SG+ALLP+++V+ DN LV + D VY YP K++A+ +FI Sbjct: 242 SGVALLPEWLVRDDLDNGTLVDALPDYRFAQQGVYALYPSTRHVPQKIRAWVDFI 296 >gi|126726824|ref|ZP_01742663.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] gi|126703782|gb|EBA02876.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 6/290 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE + ++LF R R LT TEQG Sbjct: 5 DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLSVRLFQRTTRSLTPTEQGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E+ ++ + ++ + P G L +A + +G+ L+ ++ FL YP++ I+ Sbjct: 65 FYGGACEILDSVDNAEAQIVNITDNPKGSLYVAAPLGVGRRLIAPHVPAFLDQYPEVTIR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D AI L +P+ S+ I RK+ I A+P Y+ P + Sbjct: 125 LRLTDRKVDLTTEGLDLAIFLGQPVDSNLRI-RKIADIERVLCASPSYIARNGNPETGDA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L N P E F W + R+S + + + + + G GIAL Sbjct: 184 LVAGNHECLNLRFPGAPE-FQWPLMTSEGVKRFRVSGRYESDDGDVLTDWALGGHGIALK 242 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P + V D + +LV++ + + Y K + F +F+ Sbjct: 243 PIFEVADHLKSGDLVKVAKGTPPEPIQMACLYTHKRGQDPKTRMFMDFMI 292 >gi|331649342|ref|ZP_08350428.1| putative transcriptional regulator LYSR-type [Escherichia coli M605] gi|331041840|gb|EGI13984.1| putative transcriptional regulator LYSR-type [Escherichia coli M605] Length = 323 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ S L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|295097732|emb|CBK86822.1| Transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 308 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEQGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTAEMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L ++ M A+ YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E + + E R N ++I ++ V G+GIA +P Sbjct: 185 SNHSWLEYSVRPDNEFELIAPEGLSTKLLPEGRFV---TNDPMTISRWLVAGAGIAYVP 240 >gi|152997682|ref|YP_001342517.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150838606|gb|ABR72582.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 290 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 17/289 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V R G F+ AA +L +S S ISR I+ LE E+G L +R R + L+E G + Sbjct: 1 MEAFVEVVRQGGFSAAAIKLSVSASHISRLITQLEAELGTTLLFRTTRRIRLSEAGELYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L + + + + P G ++ G+ + + +FLL +P I++ Sbjct: 61 QHCRGLPEALSSAEEVISSLNQAPIGAFKMTCATTFGERYIAPLMNDFLLNHPKIELDFH 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D AIR+ ++ SS + R+L + A+ Y+ P ++ EL+ Sbjct: 121 LTNRSVDLIEEGYDLAIRM-GAMKDSSHLSRRLCDRVEYLCASRDYIDQHGMPHTLAELN 179 Query: 188 KHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 KH +C+ +WL D E ++S + NS +++ G GIA L Sbjct: 180 KH----------RCLIGSKNHWLFQQDGQRKEAKVSSNWRSNSGPALLDAVRKGLGIAQL 229 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY V D+ L+ ++ P V+ YP+ + + KL++ +++ Sbjct: 230 PDYYVADDLASGKLIPLLTQYQYPYSGVWLVYPKVRQPSPKLQSICDYL 278 >gi|51597721|ref|YP_071912.1| LysR family regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|186896905|ref|YP_001874017.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|51591003|emb|CAH22662.1| LysR-family regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|186699931|gb|ACC90560.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis PB1/+] Length = 318 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSFT AA+ L L ++ +S+++S LE +G++L R R L LTE G Sbjct: 7 MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + L+ SV+P GKLRI + + + ++ +L EF YP+I ++L Sbjct: 67 AKCQVILQEIDELEGALKGGSVEPRGKLRIEALVSVARWVIAPSLHEFQARYPNISVRLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + DCAIR ++ SS I R + +H+ YAAP YL+ EL Sbjct: 127 GSDRISHLLDNGIDCAIR-GGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPHELS 185 Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I++ G P F W L + P L + + C+ GSGI Sbjct: 186 VHRRISWFTGQRNP-----FIWSLQSTSDAFELPAEEGLLFDDPDVALASCMAGSGICPG 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V+ LV ++ + ++ YP + +++ F ++ Sbjct: 241 APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288 >gi|54308917|ref|YP_129937.1| LysR family transcriptional regulator [Photobacterium profundum SS9] gi|46913347|emb|CAG20135.1| putative transcriptional regulator, LysR family [Photobacterium profundum SS9] Length = 310 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 21/264 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF +V GS+T AA++L ++ S++S+QIS LE + +KL R R L ++E G+K++ Sbjct: 20 LAVFIIVVDEGSYTAAAKKLGVTPSALSKQISRLEKALSVKLLERTTRKLMISESGTKIY 79 Query: 68 RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +V +E+ S PSG L +A +LQ + FL YPDIQ++L Sbjct: 80 E-QCKVMTNAAKQAVEIASSEHTIPSGTLTVAAPKAFLSIVLQPLVTPFLTQYPDIQLKL 138 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +IDI + D RL + S +L+ +K+ +++ A+P YL EP +L Sbjct: 139 KASDGEIDILSEGIDIVFRLTEH-PSEALVNKKIGKVNLALCASPEYLALRGEPQIPTDL 197 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240 +H+ I G+ + DF I + + V ++ ++ + G G Sbjct: 198 RQHDCIYLGETTTDHIWDF---------IKDEEFQSVSVTGRYAVNHSQMRLKGVIDGLG 248 Query: 241 IALLPDYIVK---DNPNLVRIMED 261 I + PD+++K +N ++ +++D Sbjct: 249 IGIFPDFVIKQALENGSVKEVLKD 272 >gi|209550674|ref|YP_002282591.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536430|gb|ACI56365.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 303 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 6/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L + +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE L S PSG+LR+ ++ L +F YPDI+I L Sbjct: 67 ERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R P SLI R++ + M A+P+Y++ P ++L+ Sbjct: 127 VGDRTVDYLAENVDCALRGGTP-ADQSLIARRVSEVEMITCASPNYIQKFGMPERPEDLE 185 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + F + + PR VN + + + G GIA +P Sbjct: 186 ADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRY-IASVNDSRTYLTAALTGLGIAQVPI 244 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LVR++ D +Y YP + K++ F +++ Sbjct: 245 FMAREPMAKGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWL 291 >gi|330960963|gb|EGH61223.1| LysR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 305 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/290 (23%), Positives = 136/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AA+ LHL ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFAKAADSLHLPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + +P G LRI + LG+ ++ L EF YP I + Sbjct: 64 AYYQRCVSLLADLDDAEAAFSAKGAEPKGLLRIDLPVSLGRMVVIPALPEFTRRYPQISL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL PL +Q Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DDTLVARPLGSLTQITCASRDYLDRYGTPLDLQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L +H +I + + + D G+ ++C + VNS + C G G+ Sbjct: 183 DLAQHQVIEY--FSASTSKRYGLEFMTDGWGGDHGMTCSVSVNSADGYVAACEAGFGLVQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y + + LV ++ + P+ + YP + + +++ F +++ Sbjct: 241 VPRYHIATQLRSGALVEVLREYRPPALPLTALYPPHRQLSRRVRVFVDWL 290 >gi|311695653|gb|ADP98526.1| transcriptional regulator, LysR family protein [marine bacterium HP15] Length = 300 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 121/263 (46%), Gaps = 6/263 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW++ R F V A GS + AA+ L +SQ ++ RQ++ LE E+ LF R RGL LT Sbjct: 6 VNFDWNRARAFLVTAEEGSLSAAAKALGVSQPTLGRQVAALEEELSTALFERGGRGLELT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + + + + G++ I+ + +L L+ YP Sbjct: 66 RNGLELLAYVRAMGEAASSLSLAATGQAKSIEGEIAISASEITAAYILPPILQRLRYQYP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+I L+ N+ D+ AD AIR +P + LI RK+ YA P L + P Sbjct: 126 GIRINLVASNEASDLRRRAADIAIRNFRPTE-PDLIARKVGEFSATLYARPEILADLPSP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L+ ++L K I F + LA + E + + +S+L Q G G Sbjct: 185 LT-EDLCKAPFIGF---LSNNERYVGALAQRGLKLREDQF-VARTDSHLVHWQMARTGIG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVI 263 I ++P + P++ R+ ED + Sbjct: 240 IGMMPVELGDAEPHVERVFEDKV 262 >gi|296115624|ref|ZP_06834251.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295977873|gb|EFG84624.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 304 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/304 (25%), Positives = 132/304 (43%), Gaps = 26/304 (8%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F + +GSF A+E++ +S S+ +S LE+E+G++L R R L+ TE G + Sbjct: 9 RLFVAILETGSFVAASERIGVSSGQASKMLSRLESELGVQLIQRTTRALSPTEIGQAYYE 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + + ++ S PSG+LRI + G L L F Y I++ + Sbjct: 69 RIKVILAQRDDLDASIRNISGTPSGRLRITAPMSFGNIQLMPALLAFADRYSSIRLDVSF 128 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + D+ D D A+R+ + + SSLI R+L + A+P YL P EL + Sbjct: 129 SDHLADLVEDGFDLAVRIGR-LSDSSLIARRLCDTRIVTVASPGYLAIHGVPTHPDELSR 187 Query: 189 HNLITFGDLIPKCMEDFNWLA---------TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H C+ D N+ T +P+ P + ++ + M G Sbjct: 188 H----------ACIIDTNFRTPNIWSFCNPTSRQPMSVPISGRIAFSNGEACMTAAERGL 237 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293 GIA LP +I LV ++ D P+ V+ YP A K++ +F+ F Sbjct: 238 GIACLPSFIAGPGIYKGTLVTLLRDAEPPALGVHALYPSARHLALKVRVLSDFLADHFKG 297 Query: 294 ARDW 297 +W Sbjct: 298 KAEW 301 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V + SFT A +L +S++ +S+ + LE +G +L R R L+LTE G + Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + +S+ P G L++A + G + L E++ YP++++ + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D D AIR+ + S LI RKL T + A+P YL+ P + ++L Sbjct: 121 LADRRVDLIEDGYDLAIRVGN-LPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLK 179 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +H + + GD W+ + R+ ++ N+ + + G+G+ Sbjct: 180 QHACLNYSYSSSGD---------EWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGL 230 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV D+ LV +M+D +Y YP + K++ F +++ Sbjct: 231 IWQPHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|197295020|ref|YP_002153561.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|195944499|emb|CAR57101.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 302 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 127/274 (46%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L F VAR +FT AA QL +SQS++SR + LE +GI L R R ++ TE G Sbjct: 3 DFNDLAAFMTVARERNFTRAAAQLGVSQSALSRTVRALEGRMGIPLLTRTTRSVSPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L+ + +P+G +RI T + L+ L YP ++ Sbjct: 63 QRLLESIAPRFQEIEVELESLRAMTDQPAGNVRITATDYAANEYVWPRLQPLLRRYPALK 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+ D D+ D IRL + + QR + M +P YL + + Sbjct: 123 VELVNDYGLTDLVAGRYDIGIRLGDQVAKDMIAQRIAPDMTMSIIGSPDYLASRPATKTP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L +HN I +P +W + R + R+ L N+ ++ + G G+A Sbjct: 183 QDLTQHNCINL--RLPTRNALLSWELSKGRRELQVRVEGQLTFNNVYQMVDAALAGFGLA 240 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273 +P +V + R ++ED P+F + Y Sbjct: 241 YVPKDLVAHHVEAGRLGWVLEDWF-PTFVGHHVY 273 >gi|116249016|ref|YP_764857.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253666|emb|CAK12059.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 313 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 140/284 (49%), Gaps = 16/284 (5%) Query: 19 SFTHAAEQLH---------LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F HAAEQ +S S+I + ++ LE +G++LF R R ++LTE+G+ L+ Sbjct: 9 AFVHAAEQQSYVAAARVGGVSPSAIGKAVARLEGRLGVRLFNRTTRSISLTEEGAVLYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ + + S +P G+LR++ +G +LL L F +P+I++ + + Sbjct: 69 YKRIIDDMDDAEATISRSRERPRGRLRVSVPHIVGHHLLMPILPIFAEQFPEIELDIDFE 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 +K D+ + D +R + + + LI R+L H +P YLK P + +L +H Sbjct: 129 DKVTDLVAEGLDVVVRSGE-LADARLIARRLGDQHFVVCGSPDYLKRHGRPETPDDLSQH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I F + + + + DR I PR L N+ + ++ G GIA LP Y+ Sbjct: 188 ACIHFKYPSSGRLAPWAFRSPYDRVI-FPR--TLTFNNTDAGLRAARDGLGIAHLPVYVA 244 Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + +LV ++ + P ++ +P + + K++AF +F+ Sbjct: 245 EPHMRTGSLVPVLTSFMVPYGSLSLVWPSNRQLSPKVRAFVDFV 288 >gi|110680186|ref|YP_683193.1| LysR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109456302|gb|ABG32507.1| transcriptional regulator, LysR family, putative [Roseobacter denitrificans OCh 114] Length = 298 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 9/287 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +WD LR+F VAR S + A ++L L +++ R+I LE + LF + +G L+ Sbjct: 1 MQTNWDDLRIFLAVARDNSLSGAGKRLRLDPATVGRRIQKLEAALQTVLFTKSPQGYALS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G L + + LQE S + SG++RI LL L P Sbjct: 61 ETGQALLVRAEQAETAMRAAVAVLQEQSDRLSGQIRIGAPDGAANYLLPQVCAAILKENP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D++IQ++ + ++S AD AI + P + LI +K+ +H + Y+++ Sbjct: 121 DLEIQIVALPRVFNLSRREADMAIAVSAPT-AGRLIVQKITDYKLHLAVSRDYIRDNGAI 179 Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 S+ +L +HN++ + D+I + ++L IG ++ L NS + G Sbjct: 180 RSVADLARHNVVGYIADMIFD--RELDYL----EEIGLTKVP-LASNSVSVQLNLIRQGG 232 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ ++ D+ + P + RI+ D ++ + Y E + +L+ F Sbjct: 233 GVGVVHDFALSAAPEVARILTDEVSLTRVFYLIRHEDDRRNARLRRF 279 >gi|83747356|ref|ZP_00944396.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207739636|ref|YP_002258029.1| hypothetical protein RSIPO_04337 [Ralstonia solanacearum IPO1609] gi|83725943|gb|EAP73081.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206593016|emb|CAQ59922.1| hypothetical protein RSIPO_04337 [Ralstonia solanacearum IPO1609] Length = 301 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 14/252 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A +F AA L +S S++S + LE +G++L R R ++LTE G +L Sbjct: 8 ELTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R LE E+ +PSG +RI+ + + +++ L +FL YPDI I+ Sbjct: 68 LRRVRPAVADLEDALNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHIEC 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D + +DI D D IRL + + + R + A A+P YL N P + +L Sbjct: 128 VVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPHDL 187 Query: 187 DKHNLITF----GDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H I F G L +E A VD P L + + ++ + G G Sbjct: 188 AQHRCIRFRFESGALYRWDLEHRGKSAHVNVDGP--------LTLGNLNLAVEAALAGIG 239 Query: 241 IALLPDYIVKDN 252 IA +P+ +V ++ Sbjct: 240 IAWVPENLVAEH 251 >gi|162149613|ref|YP_001604074.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161788190|emb|CAP57795.1| putative transcriptional Regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 300 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 129/289 (44%), Gaps = 9/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + F V +GSF+ AA L++ Q ++S+ I+ LE+ + + L R GLT TE G Sbjct: 4 YQAMATFVRVVETGSFSAAARHLNVGQPAVSKTIAQLESRLQVSLLIRSTHGLTPTEVGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + + SG+LR++ + + L FL +P + + Sbjct: 64 SFYERARNAIQEADEAELAAKGAGAGLSGRLRVSAATTFARLHVIPKLPHFLAAHPHLDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +ILD++ ID+ + D ++R+ + S+ + RK+ T A P YL +P S Sbjct: 124 DIILDDRMIDLVAEGVDISLRMGM-LSDSTAVARKIATGGRSVLATPAYLARAGKPQSPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H I + P A V +G L+V++ + + G+ + Sbjct: 183 DLANHEAIIYSQQ-PNVWSFTRDGAAVSVSVG----GRLRVSAAEGLRAALLADMGLTIA 237 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D++ +N +VR++E P ++ +P T K + F F+ Sbjct: 238 SDWMFAPELENGAIVRVLEAWSLPPIGLWAVFPAGRMMTAKARRFAAFV 286 >gi|83717658|ref|YP_438933.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|167615458|ref|ZP_02384093.1| LysR-family transcriptional regulator [Burkholderia thailandensis Bt4] gi|257142034|ref|ZP_05590296.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83651483|gb|ABC35547.1| LysR-family transcriptional regulator [Burkholderia thailandensis E264] Length = 306 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L+EF+ ++P ++++ Sbjct: 65 FYARCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALAVVAPALREFMSMHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 L D+ D D AIRL + P + + + + A A H + Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPFRGVCIDTYDVRPVASPALLAAHGVARIE 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P L ++ + + G Sbjct: 185 SPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFARQG 241 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 SG+ALLP+++V+ DN LV + D VY YP K++A+ +FI Sbjct: 242 SGVALLPEWLVRDDLDNGTLVDALPDYRFAQQGVYALYPSTRHVPQKIRAWVDFI 296 >gi|330992731|ref|ZP_08316675.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] gi|329760209|gb|EGG76709.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] Length = 302 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 133/286 (46%), Gaps = 12/286 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +GSFT AA Q+ + Q ++S+ ++GLE ++G +L R GLT T+ G + Sbjct: 9 VFVRVVETGSFTAAARQMGMGQPAVSKIVAGLEQQLGTQLLLRSTHGLTPTDTGQRYFER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V + S SG+LR+A G+ + L FL +P +++ + LD Sbjct: 69 VARVIADANEADTLARNSLADLSGRLRVAAPTTFGRLQIIPRLGRFLSAHPRLEVDIELD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ P+ S+++ R+L A P YL +S ++L H Sbjct: 129 DRRVDLVAEGIDVALRV-GPLHESAVVARRLARGRRSVIATPAYLARGPTLISPKDLTHH 187 Query: 190 NLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 I T G + + +VD +G S L++++ + + G+ + D+ Sbjct: 188 QAILYTRGGTLRQTFRRGE--ESVDVTLG----SRLRLSAAEGVRAAVLADLGLTVSADW 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +VR + D P+ ++ P + + +AF +F+ Sbjct: 242 MFLSELRTQAVVRCLRDWTLPAVDLWALLPAGRLTSARARAFMDFV 287 >gi|312960441|ref|ZP_07774950.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311285326|gb|EFQ63898.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 293 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 142/292 (48%), Gaps = 16/292 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT AAEQL LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRLFCQVMESGSFTAAAEQLGLSKQFVSRRLIQLEDRLGVRLLNRSTRRLDITPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL +P + + Sbjct: 64 SYYESALRLLGEVEQVEQGIAGQNSEPRGTLRLSAPLSFAMAHLGCLLPLFLQRHPQVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ S+LI R++ +I A+P YL P Sbjct: 124 EVDLSDRPVDLIGEGYDLVLRI-GTLEDSTLIARRIASIPRVYCASPEYLALRGTPHKPD 182 Query: 185 ELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H+ + +G + + L R ++VN+ + + G G+ Sbjct: 183 DLAEHDCLPYGHGRQVQWRFKGKLQALNVSGR---------MRVNNGDLLRDTAIAGLGV 233 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV D + LV I++D + T+ YP+ +++ ++A +F+ Sbjct: 234 TYLPTFIVGDALKDGRLVTILDDFAPEALTLSAVYPQHRQSSRPVQALVDFL 285 >gi|207722118|ref|YP_002252556.1| hypothetical protein RSMK02451 [Ralstonia solanacearum MolK2] gi|206587292|emb|CAQ17876.1| hypothetical protein RSMK02451 [Ralstonia solanacearum MolK2] Length = 297 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 30/305 (9%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V +G+FT AA QL +S + + + LET +G +L R R +LT+ Sbjct: 2 DKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V ++ + ++ +PSG LR++ G ++ F +P + Sbjct: 62 GRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D++ + D A+R+ P+ + L+ + L M A+P YL +P + Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRI-GPLGDADLVAKPLCAYRMAICASPDYLARHGQPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPI---GEPRISCLQVNSYLSIM 232 +L H +C+ W L+ D P +P SC N + Sbjct: 181 PADLPAH----------RCLSHMVWNRRNAWQLSGWDGPTPWRDDPAFSC---NDGHGLR 227 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G+G+ L P+ +V ++ LVR+++ ++ Y + + KL F + Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDH 287 Query: 290 IFLKA 294 + A Sbjct: 288 LLQHA 292 >gi|170749269|ref|YP_001755529.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655791|gb|ACB24846.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 337 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 117/253 (46%), Gaps = 22/253 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW +RVF + RSGSF AA +L LS +S+ R+I LE +G L RH G+ LT +G Sbjct: 13 DWQSIRVFLALQRSGSFRSAATKLGLSVNSVRRRIDDLEALIGAPLLTRHVDGIRLTAEG 72 Query: 64 SKLHRVTSEVYHKLETTQIEL----QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + E ++E L + + +G++RIA T LG L L EF Sbjct: 73 HAIL----EAAGRMEAAAFSLVRTGEGAPFAETGEVRIAVTEGLGAFWLAPRLVEFQRAN 128 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + + L + D+ AD AI+L +P S L K+ IHM YAA Y + Sbjct: 129 PRLTVDLRCAMESADVLRLEADVAIQLTRP-TSPDLRIVKIGRIHMVPYAARSYEETYGL 187 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P ++L++H ++ +ED+ + A V PI L+VN + Sbjct: 188 PARPEDLERHRIVVQDGGQTVALEDYVRSVPGFPAKV--PI------TLRVNVSSAYYWA 239 Query: 235 CVLGSGIALLPDY 247 G+GI LLP Y Sbjct: 240 IAKGAGIGLLPTY 252 >gi|170691973|ref|ZP_02883137.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170143257|gb|EDT11421.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 305 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F V + SFT +E L L ++ +SR I LE VG++L R R +++TE G+ Sbjct: 4 FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L P G +R+ T+ L + LL L +F YP+I + Sbjct: 64 LFYDRCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPEIDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L +++ID+ D DC IR+ P + SSL+ R++ + A+P YL+ P ++ Sbjct: 124 RLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPSTLD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L +H + + + + + F + V+ + S L VN ++ LG GI Sbjct: 183 QLSEHRAVNY--VSARTGKTFPFEYEVNGETVKVAMKSVLAVNDGSVYIRAGELGHGIIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V + L I+ D +P + Y + +L+AF ++ Sbjct: 241 PSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWV 290 >gi|294339059|emb|CAZ87408.1| Putative Bacterial regulatory protein, LysR, ycjZ [Thiomonas sp. 3As] Length = 302 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 8/276 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D++ L+ F VAR SFT AA Q+ +SQS++S ++ LE ++G++L R R + TE Sbjct: 3 SPDFNDLQAFIAVARERSFTRAAAQMGVSQSALSHRMRALENQLGLRLLTRTTRSVAPTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + + + ++ + L+E KPSG +RI +L L+ L YP+ Sbjct: 63 AGERLLQTLAPRFEEIGSELAALRELRDKPSGLIRITAAGHAADTILWPRLQAVLPQYPE 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q+++ LD DI D +RL + ++ + R + M A P Y P Sbjct: 123 LQVEINLDYGFTDIVSQRFDAGVRLGESLEQDMIAVRIGPDLRMAVVATPAYFARHPPPQ 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240 + Q+L HN I +P+ W D + V N+ +++ ++G+G Sbjct: 183 TPQDLATHNCINL--RLPRGGL-LAWEFERDGHALNVHVQGQWVFNTSSPLLRAALVGAG 239 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 +A +P+ ++ +L R++ D P F Y Y Sbjct: 240 LAYVPEDAALEHIATGHLQRVLLD-WCPRFVGYHLY 274 >gi|149191652|ref|ZP_01869895.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] gi|148834493|gb|EDL51487.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] Length = 294 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 10/262 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F VA S F+ AA+QL S S +SRQ+S LE +G+ L R R + LT+ G Sbjct: 4 FEGINEFVAVAESHGFSAAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRMVNLTQAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ L+ +L ++ +G LR++ +N + L EF YP++ + Sbjct: 64 VYYQQCKDLVIGLQQANEQLSSEQIQLNGTLRVSAAGAFAENHVAPALMEFAKGYPELTV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ D + ++ D D AIR + + S L+ RKLV M A A+P YL+ P Sbjct: 124 EMDFDTRMVNFIEDGIDFAIRYGR-LSDSGLVARKLVDRPMAAAASPEYLERYGVPTHPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H+ I + D +P+G R+ + N+ +++ C G GI Sbjct: 183 QLRHHSCIIANN-------DHWVFEDNGKPMGSIRVDGRWRSNNSSAVVNACEQGLGIVY 235 Query: 244 LPDYIVKDNPNLVRIMEDVITP 265 +P D + R++ V+TP Sbjct: 236 MPKSSFSDAFHNGRLVP-VLTP 256 >gi|262278567|ref|ZP_06056352.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258918|gb|EEY77651.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 304 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/298 (24%), Positives = 144/298 (48%), Gaps = 29/298 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA + SF HAAE L L S+++ I LE + ++L R R ++LT +G++ Sbjct: 9 MQIFVRVAEAESFIHAAEALSLPASTVTSTIKNLEKYLQVRLLNRTTRRVSLTPEGAEYL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ +E T+ L + +P G+LR+ + +++ NL+EF YPDI + + Sbjct: 69 TQCREILDLIEHTESNLTNAIKQPQGRLRVDMPAGIAHSVIMPNLQEFQGRYPDIYLMIG 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DC IR+ +++S+L+ R L A+ YLK P + +L Sbjct: 129 VSDRQVDLIKEGVDCVIRMGN-LENSTLVARPLGEFRWVTCASAAYLKENGIPQTPDDLA 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQYC 235 H I ++ + +R GE R +Q+N +++ ++ C Sbjct: 188 HHRAI-------------HYFSGNNRHTGEMRFVRNGEKKTVQMNGTVAVNETELYIKMC 234 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G++ L + +V ++ L+ +++D TV YP + ++ F +++ Sbjct: 235 LEGYGLSQLAERLVTEHLKEKRLIPVLQDWCPSPVTVTLLYPHQRFLSPAVRVFSDWM 292 >gi|170018250|ref|YP_001723204.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739] gi|169753178|gb|ACA75877.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739] gi|323934697|gb|EGB31087.1| LysR substrate binding domain-containing protein [Escherichia coli E1520] gi|323939499|gb|EGB35708.1| LysR substrate binding domain-containing protein [Escherichia coli E482] Length = 323 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL +P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHNRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|89052618|ref|YP_508069.1| LysR family transcriptional regulator [Jannaschia sp. CCS1] gi|88862167|gb|ABD53044.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1] Length = 295 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 10/285 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW LR VA +GS + AA QL +Q ++ RQI E +G LF RHARGLT T Sbjct: 5 LDWTLLRAVLAVADTGSLSGAAAQLTRTQPTLGRQIKAAEQALGQPLFTRHARGLTPTPF 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 L ++ + + S SG++R+ ++ + ++L G L + +P+I Sbjct: 65 CETLLPAAQQMNDAAKAVSVLAAGQSPDTSGRVRLTASVFVTAHILPGILADIREAHPNI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++ + ++ AD A+R+ +P Q +I + L + + YA+ Y+ P S Sbjct: 125 ALDIVASDTTENLLFHEADIALRMYRPTQ-LDMIAKHLGDLPLGLYASETYIARHGTPHS 183 Query: 183 IQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H ++ + DLI + M + V R +C + ++ + G G Sbjct: 184 ADDLKHHQMVGYDRSDLILRGMREMGM--EVTRAF---FTTC--TDDQVAYWNFVAAGCG 236 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 I + + + P + RI+ D+ P V+ L++ ++ A Sbjct: 237 IGIGQTLVAERTPGMRRILPDLRLPVLPVWLTAHPGLRHQPRVHA 281 >gi|51243144|gb|AAT99360.1| putative LysR-type regulator [Sphingomonas sp. tfd44] Length = 299 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 15/242 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++ R+F V + S A L +S S +S++++ LE +G +L R R L+LTE+G++ Sbjct: 4 NEYRLFAAVVDAASLAGAGRALGISPSMVSKRLAALEERLGTRLVNRTTRRLSLTERGAR 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + + + + + + + PSG LR++ G+ + +LK FL +PDI++ Sbjct: 64 FHDEVTAILASMREAERRVSDRTDHPSGPLRLSLPTSFGRLHVVPHLKAFLDTWPDIELT 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + + D+ + D AIR+ I +S L L AAP YL+ P SI + Sbjct: 124 LDMSDGLRDLFAERIDVAIRITAAI-TSGLTAHHLAPSRRLLCAAPSYLEAYGAPRSIAD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241 L H L+ +P W +D P G PRI S + NS ++ + + G GI Sbjct: 183 LGHHRLLAATGQLP-------W--QLDGPSG-PRIVRGRSAVNTNSSEAVRELALAGVGI 232 Query: 242 AL 243 AL Sbjct: 233 AL 234 >gi|24114789|ref|NP_709299.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 301] gi|30065197|ref|NP_839368.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 2457T] gi|110807383|ref|YP_690903.1| putative LysR type transcriptional regulator [Shigella flexneri 5 str. 8401] gi|24054013|gb|AAN45006.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 301] gi|30043459|gb|AAP19179.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 2457T] gi|110616931|gb|ABF05598.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5 str. 8401] gi|281602878|gb|ADA75862.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2002017] Length = 323 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL +P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHNRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|171315659|ref|ZP_02904893.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171099191|gb|EDT43964.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 300 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 13/300 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V GSFT A+ +L + S +SR++ LE ++G++L YR R +++TE G Sbjct: 4 DSIRIFLRVVERGSFTAASVELDMPLSRVSRKVKHLEDDLGVQLLYRTTRRVSVTEAGRD 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L +++ P G LR+ +G L+ L EF +P +Q+ Sbjct: 64 YYERCLRAEDILLDADRQVRTLRTDPEGTLRVLVPYAIGLFQLEPALAEFRRRHPLVQLV 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI DN +D+ D A+R + + S + R L H A+P YL P + + Sbjct: 124 LIYDNSPLDLVEHGFDVALRAGQ-LNDSGYVARSLGWSHAKLAASPAYLDRTGRPRTPND 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H+++ G P L+ D + + P L N +++++ G GIAL+ Sbjct: 183 LAQHDILFVGRDAPGLTLR---LSNTDGEVADVPVQPVLISNESVTVLRQATSGGGIALI 239 Query: 245 PDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + L R +++ P + ++ YP K++AF F+ W+ Sbjct: 240 STHFTAR--RLARNELEIVLPDWHRTNDVELHVLYPRRATLDSKVRAFVEFMTELFATWR 297 >gi|160873791|ref|YP_001553107.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|160859313|gb|ABX47847.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|315266017|gb|ADT92870.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 329 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 103/189 (54%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI +L + F+ ++P + ++ Sbjct: 64 FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I ++ +D+ D A + + + L+ R + T + YA+P YL P + +E Sbjct: 124 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAAHGTPKTPKE 183 Query: 186 LDKHNLITF 194 ++ HN+ F Sbjct: 184 IEAHNVSMF 192 >gi|146309716|ref|YP_001174790.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145316592|gb|ABP58739.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 295 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 6/278 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L F VAR GSFT AA QL ++Q ++S+ I+GLE + I+L R R ++ T Sbjct: 1 MKRNLNDLFAFVTVAREGSFTRAAAQLGVTQPALSQAITGLENRMQIRLLTRTTRSVSPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + ++E L E KP+G +RI + + L L L YP Sbjct: 61 AAGERLLNAIGNRFDEIEAELDMLSELRDKPAGTVRITCGPSVLKETLFPKLTPLLREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI ++ ++ DI D D +R+ I + + M A A+P Y P Sbjct: 121 DIHVEFDANHGFRDIVADRFDAGVRMGDTIDKDMIAVPIGPQLRMAAVASPDYFSRFPIP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + EL +H I + K + W D R+S L N+ I+ + G Sbjct: 181 QTPHELTQHQCINQRQI--KSGGLYVWDFDQDGGDLNVRVSGQLTFNTSDHIVDAALAGF 238 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G+A LP+ D+ L+R++E P Y YP Sbjct: 239 GVAFLPEEEFGDHIAAGRLIRVLEPWCQPFPGYYLYYP 276 >gi|157370197|ref|YP_001478186.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157321961|gb|ABV41058.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 310 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 136/300 (45%), Gaps = 18/300 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F VA+ G F+ A+ L + +S +S ++ LE +G+ LF R R + LTE G Sbjct: 8 DLNDLYYFAQVAQYGGFSAASRALDIPKSKLSARVLALENRLGVLLFQRTTRRVKLTETG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S L R ++ E Q + +S +PSG +R++ LL L F+ P IQ Sbjct: 68 SLLLRHAQVAINEAEIAQELIDQSRAEPSGLVRVSCPKLAADVLLSPCLPAFMAANPGIQ 127 Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL+ ++ D D D A+RLR + S +I R+L A+P YL Sbjct: 128 VQLLANDNRFDPVTDKIDVALRLRQRKDMSEGMIARELGQSVRILVASPQYLAQHPSLTD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS--- 239 Q+L +H L+T D+ E W ++ P GE R ++V L ++ +L Sbjct: 188 PQQLSEHALLTLVDV----SEQQTW--DLEGPDGEKR--AVRVRPRLMCSEWGILRGALY 239 Query: 240 ---GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIALLPD LVR++ ++ +P ++A +F+ ++ Sbjct: 240 QHLGIALLPDITCHQALMQGELVRVLPQWACAPLIMHAVFPTRRGMLPSVRALVDFLAIQ 299 >gi|90420249|ref|ZP_01228157.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans SI85-9A1] gi|90335583|gb|EAS49333.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans SI85-9A1] Length = 302 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 127/261 (48%), Gaps = 7/261 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V G F+ AA +S S++S+ ++ LE +G +L +R R LT +G Sbjct: 9 FAEMEVFATVVERGGFSAAARVSGMSASAVSKLVARLEARLGTRLVHRTTRRFQLTPEGQ 68 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L + + +P+G++R+ ++ ++L L +FL YP+I + Sbjct: 69 GFYDRAVAILADLSDAE-RAAGAGERPAGRVRLNSSASYISHVLAPILPDFLARYPEIGL 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ ++ +D+ + D AIR P+ SS+L+ RKL M AAP ++ P +I Sbjct: 128 DIVQTDQVVDLVAERTDIAIRA-GPMPSSNLMARKLGQTRMMIVAAPGWVARHGLPRTIA 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL+ H + FG + M+ + + + P + +Q+N + + + G G A L Sbjct: 187 ELEAHERLGFG--YARAMKGWPLRSDAGEAVTLPTLGRVQINDGEGLRRLALAGVGPARL 244 Query: 245 PDYIVKDN---PNLVRIMEDV 262 + ++ + LV ++ED Sbjct: 245 AAFTIRADIAEGRLVPLLEDA 265 >gi|193222375|emb|CAL62460.2| Putative transcriptional regulator LysR family [Herminiimonas arsenicoxydans] Length = 293 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V + SFT A +L +S++ +S+ + LE +G +L R R L+LTE G + Sbjct: 7 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + +S+ P G L++A + G + L E++ YP++++ + Sbjct: 67 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D D AIR+ + S LI RKL T + A+P YL+ P + ++L Sbjct: 127 LADRRVDLIEDGYDLAIRVGN-LPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLK 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +H + + GD W+ + R+ ++ N+ + + G+G+ Sbjct: 186 QHACLNYSYSSSGD---------EWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGL 236 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV D+ LV +M+D +Y YP + K++ F +++ Sbjct: 237 IWQPHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 288 >gi|171319247|ref|ZP_02908363.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171095549|gb|EDT40513.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 345 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 15/294 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66 F VA GSFT AAE+L + + ++SR + LE ++ +LF R R LT +G + Sbjct: 35 AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94 Query: 67 -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H+ +++ + +EL++ P G +RI++ + G+ ++ L++F YPDI I Sbjct: 95 CHQGVAQIVEAM-NDMLELRQG--PPRGVIRISSAVGFGRKIVAPLLEKFAHAYPDIIID 151 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD++ ID+ + D + R + I+ SS+I R+L+ + M AAP Y+ P I + Sbjct: 152 LLLDDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARYGLPQRIGD 210 Query: 186 LDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD+H I F + E +FN V + + R L N +++ + G+GIA + Sbjct: 211 LDRHECINFRFASGRVFEWEFNVDGRVQKYLPTSR---LTFNDADLVLRAVLNGAGIAQM 267 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y ++D + LV + + Y CY +++ F +F+ + R Sbjct: 268 AGYQIRDHLASNELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFMTERIR 321 >gi|169632130|ref|YP_001705866.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF] gi|169150922|emb|CAO99529.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii] Length = 293 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 34/310 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L+ F V+AR+ + T+AA + + S+++R+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E +++++ G++RI T G L L EF + Y Sbjct: 61 LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD + + +P +I R L + Y + +YL Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKVYGSQNYLAQNPP 174 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228 +++L +H + + +D + P + CL+ +S Sbjct: 175 IRRLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L+ G+G+A+LP ++ D P L ++E + + T + L++ ++K + Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278 Query: 289 FIFLKARDWK 298 ++ +A ++ Sbjct: 279 YLRKQADKYQ 288 >gi|33591527|ref|NP_879171.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33571169|emb|CAE40670.1| probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gi|332380886|gb|AEE65733.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 293 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 18/281 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D LR+F V +GS AAE L + S +SR ++ LE E+G+ L R R + LT Sbjct: 1 MPLNSDALRLFLAVVDAGSMRAAAELLGHTASGVSRGLARLEAELGVTLLTRTTRRMELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + + L+ Q ++ +P+G+LR+ + + + L +++EF YP Sbjct: 61 EEGRQFQQKARAILLALDEAQECMRIRHQQPAGRLRVDASAPVMLHCLVPHVEEFSRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ++L +++ +D+ +D A+R + SSL R + A+P YL +P Sbjct: 121 EIQLELTSNDRIVDLIEHRSDVALRA-GVLSDSSLHARAFKPSTLLVVASPAYLARHGKP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP---IGEPRISCLQVNSYLSIMQYCVL 237 + L +H L+ F P+ + W D + EP I +S ++ + Sbjct: 180 RDVAALRRHRLLGFTQ--PETLN--RWPLRHDGGSTFVVEPDIGA---SSGETLRGLALA 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVIT----PSFTVYF 271 G+GIA L D++++ + +LVR++E P VY+ Sbjct: 233 GAGIACLSDFMLRADLASGSLVRLLESADNGYRQPLHAVYY 273 >gi|291086492|ref|ZP_06355950.2| HTH-type transcriptional activator AaeR [Citrobacter youngae ATCC 29220] gi|291067565|gb|EFE05674.1| HTH-type transcriptional activator AaeR [Citrobacter youngae ATCC 29220] Length = 304 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+ + +L + P G LRI + + QN+L G L YP + + L+ Sbjct: 61 QGCRRMLHEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQFGVPEKPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + E R I E R N ++++++ G+GIA +P Sbjct: 180 NHSWLEYSVRPDNEFELIAPEGISTRLIPEGRFVT---NDPMTLVRWLAAGAGIAYVPLM 236 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V + N R +++ P + VY Y E K K++ N++ Sbjct: 237 WVINEIN--RGEVEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 282 >gi|295699410|ref|YP_003607303.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438623|gb|ADG17792.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 297 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 143/299 (47%), Gaps = 29/299 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AA+ L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 8 NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEEYYKFPLFKRHAKGLTLTAEGEM 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E ++ L+ + + L++ T + + + F YPD+ +Q Sbjct: 68 LLPTVKESFARIE--EMSLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQSEYPDLHVQ 122 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D + D AI +Q+ SL + +L + P LK+ +P Sbjct: 123 ITTTWQHDVDFQSEPFDAAIIYGSSPGADVQAVSLFEERLTPV-----CTPELLKD--KP 175 Query: 181 LS-IQELDKHNLI-------TFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSI 231 L+ + +L +H L+ + + K E D AT+D +G P L + + + Sbjct: 176 LAQVADLARHTLLHPTRDHRDWKMWLAKVAETDATGAATIDAELG-PSFDTLDMATNAAA 234 Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + S +AL+ + + LVR E V+ + YF YP+++ KL FR+++ Sbjct: 235 QGFGIAISDLALIDEDVAAR--RLVRPFETVLKTGWRYYFVYPDSVAQQQKLNLFRDWM 291 >gi|226945165|ref|YP_002800238.1| transcriptional regulator LysR family protein [Azotobacter vinelandii DJ] gi|226720092|gb|ACO79263.1| Transcriptional regulator LysR family protein [Azotobacter vinelandii DJ] Length = 309 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 1/186 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A SGSF+ AA QL L+ +++SR ++ LE +G +LF+R R LTLTE G + Sbjct: 6 NLESFVRSAESGSFSAAARQLGLTPAAVSRNVALLEKNLGTRLFHRSTRKLTLTESGERF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 L+ E+ +P+G L+++ + G L L +FL YP ++I Sbjct: 66 LLGVRGHLDGLQAAISEVASDRGEPAGVLKVSVALAFGMEYLLPLLPDFLQRYPHVRIDW 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 DN+ +D+ + D AI + + ++ R L H+ A A+P Y+K R P S +EL Sbjct: 126 QFDNRQVDLIAEGFDAAIGGGFEL-AQGMVARTLAPAHIIAVASPTYMKGRRNPFSPEEL 184 Query: 187 DKHNLI 192 + + I Sbjct: 185 AELDGI 190 >gi|160900209|ref|YP_001565791.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365793|gb|ABX37406.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 299 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GSFT AAE+L LS++ +R + LE +G +L +R R ++LT+ G++ Sbjct: 7 MQVFATVAECGSFTAAAERLDLSRAMATRHVESLEQWLGARLLHRTTRRVSLTDAGAQCL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + Q E++ + G LR+ ++ G + + +F+ L+P ++I L+ Sbjct: 67 RYSQQMLALADEVQGEMRAGDSQLRGLLRVTCSMSFGHAQMAPAIAQFMRLHPHLKIDLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ +D+ D AIR+ ++LI R L A+P YL P + +L Sbjct: 127 VDDGALDLVQQRIDLAIRISAD-PGAALIGRPLAVCESVLVASPAYLDAAGRPQTPAQLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H + G + + + LA D E +I+ N + V G+GIA Sbjct: 186 AHRCL--GHM--RVGRNVWQLARRDDESDEQQIAVTTWFNANEATVLAAAAVEGAGIAFQ 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y+V+ L ++ D TV+ Y ++A +F+ Sbjct: 242 PTYLVQPMLQAGQLELVLPDWRPQPLTVHALYSSRRHLPVAVRALLDFL 290 >gi|323166999|gb|EFZ52738.1| hypothetical protein SS53G_2841 [Shigella sonnei 53G] Length = 299 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL +P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHNRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAMVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V++ L+ ++ ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGQLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|320664046|gb|EFX31233.1| LysR family transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] Length = 299 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQLI Sbjct: 69 SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMGKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|270263665|ref|ZP_06191934.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042549|gb|EFA15644.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 297 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 123/270 (45%), Gaps = 23/270 (8%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 FD+ + F V GSFT A L + S +SR +S LET +G +L +R R L LTE Sbjct: 5 FDYLGDVEAFIAVIEKGSFTAGAVALSTTASVLSRAVSRLETRLGRQLLHRTTRHLGLTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + +L+ E+Q + +G++RI+ G L L F YP Sbjct: 65 AGRLYLEQARSAFQQLDDAGREIQGLEGELTGRVRISVPTTYGHYRLPPLLARFAQQYPQ 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++L + N+++D+ + D AIRL + S L+ RKL + A+P YL P Sbjct: 125 VRVELNITNRNVDLVAEGFDLAIRL-GDLPDSGLVARKLEDAALLLVASPGYLNRAGTPK 183 Query: 182 SIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 +++EL++H + F G L P D +WL P S + L ++ Sbjct: 184 TLEELERHMCLPFVMPRTGRLAPWVFRDGERDVDWL---------PSSSIEISDDVLGVV 234 Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIM 259 G GI ++IV D N LV I+ Sbjct: 235 SLAEQGIGICQSYEFIVHDRMENGRLVEIL 264 >gi|254509574|ref|ZP_05121641.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] gi|221533285|gb|EEE36273.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] Length = 304 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 14/293 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A + +S + S +IS LE +G++LF R R LT TEQG Sbjct: 5 DNIRTFVRVYDLGSMSAAGRDMRISPAVTSARISQLEDHLGVRLFQRTTRNLTPTEQGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V ++ + ++ + P G L +A + +G+ LL ++ +FL Y +I ++ Sbjct: 65 FYPGAVAVLDAVDEAEAQVTHLTEAPRGSLFVAAPLGIGRRLLAPHVPDFLSEYAEIDVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A + +P + S+L RK+ AAP Y++ P + E Sbjct: 125 LRLTDRSVDLTTEGLDLAFFIGQP-EDSTLRIRKIADCARVLCAAPAYVERRGMPETGAE 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 L DKH + P E F W+ +D P G R + + + + + + G G Sbjct: 184 LIADKHECLNL--RFPGATE-FQWM--LDTPEGPKRFAVSGRFECDDGDVLTDWALSGQG 238 Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFC--YPEALKNTGKLKAFRNFI 290 IA+ P + V ++ R++ TP TV Y K + F +F+ Sbjct: 239 IAMKPVFEVSEHLKTGRLIPVATQTPPVTVQMACLYTHRRHQDPKARLFMDFM 291 >gi|209517419|ref|ZP_03266261.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209502186|gb|EEA02200.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 323 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 2/237 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L+ F S +F+ A QL ++ ++S+QI LET +G +LF R R L++T++G Sbjct: 12 FRALKTFAATVESTNFSAAGRQLGVTPGAVSKQIGMLETLLGCRLFQRTTRHLSVTDEGR 71 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L+ + E ++E L + + SG ++++ I + L L F YP + + Sbjct: 72 RLYAMAREPAQQIEDAIAALSSNETQLSGTVKVSLPIAFSRVALLPVLGRFRERYPQVTL 131 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L +N+ +D+ + DCAI SS++ R L ++ + AAP YL+ EP +I+ Sbjct: 132 DLRFENRHVDLISEGYDCAIGQLHDT-DSSVVARTLASLTLILCAAPAYLERHGEPQTIE 190 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L+ H LI F ++ + LA + EP S L V+ ++ + V G GI Sbjct: 191 DLEHHELIAFRSPSSGRIQTWKLLARNKEVVFEPG-SHLIVSDTEALTEVAVGGCGI 246 >gi|260426363|ref|ZP_05780342.1| LysR substrate binding domain protein [Citreicella sp. SE45] gi|260420855|gb|EEX14106.1| LysR substrate binding domain protein [Citreicella sp. SE45] Length = 300 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 10/218 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F + GSF AA LH+++S+ + I+ LE E G++L R R + T +G++ Sbjct: 5 DRLELFTRIVEGGSFARAARDLHVARSTATNAINQLEQEAGVRLLARTTRQVAATPEGAE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + ++E T S P+G LRI + L + L L FL +P + I Sbjct: 65 FYRRARAILAEVEDTFGTFASGS--PTGHLRIDASGLLTRTFLVPRLPAFLERFPGLTIS 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +DI D DCA+R P Q SSL RKL + A+P YL P + Sbjct: 123 FSQSDRFVDIVRDGVDCALRAGHP-QDSSLRMRKLGELPEITCASPAYLARHGTPRDCDD 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEP 218 L+ H +I F G+++P +E ATV R + P Sbjct: 182 LESHRMIGFLSSRTGEVMP--LEFRRDGATVHRRLPAP 217 >gi|237799694|ref|ZP_04588155.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022549|gb|EGI02606.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 141/292 (48%), Gaps = 14/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F V GS+T AAE L++ + ++S+ I LE E+G++L +R R + T G + Sbjct: 5 EAMQMFVAVVDQGSYTKAAEALNVHRPAVSKLIQNLEHELGVQLLHRTTRRVNTTPAGDE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ +L T +EL + P GKLRI LG ++ L EF+ YP ++I Sbjct: 65 FYERSLKLLSELAET-LELFSPTRAPRGKLRIDMQTVLGHAVIIPRLPEFMERYPGLEIS 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + D+ D DC++RL + SSLI +++ + + AAP Y+K P ++ + Sbjct: 124 LGASDNLNDLIADGIDCSVRLGD-LDDSSLIAKRIGEVALVTCAAPAYIKKHGLPDTLDD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL-- 243 L H + F ++ + + W + ++ V + YC L +GI + Sbjct: 183 LQAHLAVNF--MVEQRRQIMPWRFRANGKTINVKMRSGIVVDNAEALLYCAL-AGIGMVQ 239 Query: 244 -----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L YI D+ L+ ++ DV TV +P+ + ++ F ++ Sbjct: 240 GLRPALKRYI--DSGRLIEVLPDVSVEPKTVSVLFPDRRHLSPNVRVFVEWV 289 >gi|239813744|ref|YP_002942654.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239800321|gb|ACS17388.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 301 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 8/290 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V AR G+ T AA L ++ ++ S + LET++G +LF R R + LT QG L Sbjct: 9 LQVLVQTARGGTLTAAAHALGMTPAAASATLKRLETQLGARLFERSTRAMRLTSQGQTLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + + G LR+A DL ++ L EFL L+P +Q+ L Sbjct: 69 DYAVRAFELLDEGESLVTAERGELVGTLRVAAPSDLTRSTLLPWFDEFLALHPGVQLSLS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D++ D D A+R + S L+ R + A+P YL+ P + Q+L Sbjct: 129 VGDRLLDVTRDEVDVALRY-GALADSRLVARPFALTNPLLTASPAYLRRHSAPKTPQDLV 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 HN +TF W + E R+ V+ ++ V G GI L Sbjct: 188 HHNCLTFDR---GGRRHRTWRFAQNGQWTEVRVKGDRSVDDASLAREWAVAGLGIVLKSA 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 V+++ LVR++ + T + ++ P +++A NF+ LK Sbjct: 245 LDVREDLRKGALVRLLPEWDTEPYPLHALLPSGRFVPARVRALVNFLALK 294 >gi|293602079|ref|ZP_06684533.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292819534|gb|EFF78561.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 360 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 147/290 (50%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L L +++++ I LE +G++L R R + LT G+ Sbjct: 4 FQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +E T+ QE++++ G+LRI +G+ +L +L +F YPD+++ Sbjct: 64 GYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPDVEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + DC IR + ++ SSL+ R++ T+ A+P Y+ P +I+ Sbjct: 124 VLGLGDRPVDMVQEAVDCVIRGGE-LEDSSLVARRIGTLQTVTCASPTYIARHGMPQTIE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H+ + + + + + W VD E + + VN + + + G G+ Sbjct: 183 ALRDHHAVHY--FMSRTGRNCPWDFKVDGKHQEVDMKGTVAVNEAGAYLDCGLKGFGLIQ 240 Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + Y+ + L+ I+ S + YP++ + + K++AF +++ Sbjct: 241 VARYMALPHLQSGELIEILPQWKPSSTPISVLYPQSRQLSPKVRAFTDWV 290 >gi|251792526|ref|YP_003007252.1| LysR protein [Aggregatibacter aphrophilus NJ8700] gi|247533919|gb|ACS97165.1| LysR protein [Aggregatibacter aphrophilus NJ8700] Length = 302 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA ++S + S+ +S LE + +L +R R + TE GS Sbjct: 5 NAISIFCKVIETQSFTQAAALQNISVAMASKLVSQLEEHLKTRLLHRTTRKIVPTEAGSI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ V +LE + S G L ++ D G + NL F+ +P++ I Sbjct: 65 YYQRCQPVLFELEDADSSISNLSTSLQGHLTVSVPRDFGLRFITPNLGSFVKAHPNLHID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ ID+ + D A+R+ +Q SSL+ RK+ T MH A+P YL P + ++ Sbjct: 125 IEFNDRIIDLVSEGFDLALRIGY-LQDSSLVARKVATSSMHFVASPEYLAKHGTPQTPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H+ + + + + + R ++ C N+ L++ C G GI P Sbjct: 184 LEHHDCLLYKSTGNQIYWESDKHNKTQRVKMRSKLMC---NNGLTLATLCTEGLGIINSP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ + LV ++ D S ++ YP K+ AF +FI Sbjct: 241 RFFIEEELASGKLVEVLADYRQQSLDLHVIYPNRRHLAAKVTAFIDFI 288 >gi|116250116|ref|YP_765954.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254764|emb|CAK05838.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 296 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 13/298 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+ + L +F SGSFT AA L + +S++S++++ LE +G++L R +R LTE Sbjct: 4 FNLNDLHLFVQAVDSGSFTAAARHLGIPKSTVSKRVAELEARLGVRLIQRTSRSFALTEL 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + E + ++ +P+G +R+ ++ Q L +L + YP + Sbjct: 64 GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAVRYPKL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ + + ++ +DI + D A+R R P+ S+L+QRKL + A+P Y+ +P Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRTPLPDSALVQRKLASHPFFILASPDYVSVHGQPR 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL +H I + ED L + + S + + +M+ + G GI Sbjct: 184 RPEELAQHATI-----MTSLTEDLWRLYSGGDEVLVALQSVMAADEPYVLMEMAMSGLGI 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKAR 295 LP + + + LVR++ + S P G+L A R + FL R Sbjct: 239 TCLPTSVCRKALADGRLVRVLPEWTAGSIETTILMPH---RRGQLPAVRAVVDFLAER 293 >gi|300702499|ref|YP_003744099.1| transcriptional regulator protein, lysr family (aaer) [Ralstonia solanacearum CFBP2957] gi|299070160|emb|CBJ41451.1| putative transcription regulator protein, LysR family (aaeR) [Ralstonia solanacearum CFBP2957] Length = 298 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/302 (23%), Positives = 134/302 (44%), Gaps = 30/302 (9%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V +G+FT AA QL +S + + + LET +G +L R R +LT+ Sbjct: 2 DKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V ++ + ++ +PSG LR++ G ++ F +P + Sbjct: 62 GRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D++ + D A+R+ P+ + L+ + L M A+P YL +P + Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRI-GPLGDADLVAKPLCAYRMAICASPDYLTRHGQPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPI---GEPRISCLQVNSYLSIM 232 +L H +C+ W L+ D P +P SC N + Sbjct: 181 PADLPAH----------RCLSHMVWNRRNAWQLSGWDGPTPWRDDPAFSC---NDGHGLQ 227 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G+G+ L P+ +V ++ LVR+++ ++ Y + + KL F + Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDH 287 Query: 290 IF 291 + Sbjct: 288 LL 289 >gi|240949243|ref|ZP_04753587.1| LysR family transcriptional regulator [Actinobacillus minor NM305] gi|240296359|gb|EER47003.1| LysR family transcriptional regulator [Actinobacillus minor NM305] Length = 304 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 144/296 (48%), Gaps = 19/296 (6%) Query: 1 MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+ D + +R F + GSF+ A+E L +++++IS QI LE +G+ L +R R + Sbjct: 1 MALDRLEAIRAFCRIVELGSFSKASEVLGVAKTTISGQIQALEERLGMTLLHRSTRRVYP 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G+ + + + + +Q+ S GK++I TT LG NLL L +FL Y Sbjct: 61 TTDGTAYYEQVKILLENFDDLENLIQDKSTL-RGKIKIETTAPLGSNLLIPALPDFLQKY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P+I++++ + +D+ + DCA+R P+ L+ + + + AAP YL N E Sbjct: 120 PEIRLEIRCSERAVDLIQEGVDCALR-GGPVTEPDLVCKPVGQMRFCLCAAPRYLNNAPE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ---YC- 235 ++L +H I F + + + L D I ++++ YL+ YC Sbjct: 179 LSHPRDLAQHQYIGFRFPVTDKLHTYT-LKNGD------EIYNVELSPYLTFNNADVYCN 231 Query: 236 --VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G GI +P V+ ++ LV ++ + T S + YP + + + +++AF Sbjct: 232 ASLAGLGIIAMPRASVQRYFESGELVEVLPNWQTSSMPISIVYPYSRRLSARVRAF 287 >gi|34496737|ref|NP_900952.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34102592|gb|AAQ58957.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 308 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 7/293 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA GSF AA +L LSQ ++S+ ++ LE + L +R +R L LT G Sbjct: 6 DLEAWAIFAKVAECGSFARAAAELALSQGTVSKAVTRLEARMKTTLLHRTSRRLALTAAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + ++ E S G++R+A + G + L L EF+ +P+++ Sbjct: 66 DAALERAARILAEGEAVEADVAEQSGSLRGRVRVAAPMSFGISHLAPLLPEFMARHPEVE 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++ +D+ D A+R+ P SSL+ R+L + + AP Y + P Sbjct: 126 LDFHFSDEQVDLVAQRMDLALRIASPAD-SSLLARRLCAVRILLVGAPGYFERHGRPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H + + + P F + + P S L+VN+ ++ G G+AL Sbjct: 185 SELAHHRALQYSN-APGRHWRFRHAEEGEFALEAP--SPLRVNNAEALTPALRAGLGLAL 241 Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 P+++V ++ R+ M +Y P +++A ++ K Sbjct: 242 QPEFLVWEDLRAGRLETAMAGWEVDPIALYILTPPGRGRPARVQALIAYLAEK 294 >gi|152989245|ref|YP_001349416.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964403|gb|ABR86428.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 302 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +GSFT AA L ++ +++S+ I+ LE E+ +KLF+R RG++L+E G + H Sbjct: 10 LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T + Y L + L ES +PSG LRI + + L ++LL L F+ YP +Q+++ Sbjct: 70 EQTEQPYRDLLRAREALGESLEEPSGHLRI-SALHLAKHLLTAPLLGAFVQRYPKVQLEI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +DI + D IRL +Q + + + A P YL P ++ L Sbjct: 129 RYEDQLVDIVREQLDAGIRLADALQPGMVGVQLTPPLACLLVATPAYLAERGTPAALDGL 188 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--L 243 D H + F P+ W L R + + +I++ G+GIA Sbjct: 189 DGHVAVRF--RFPRSGRLHKWRLREGAREVEADLPARFVSTDTEAIIEAARAGAGIAQVF 246 Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + + D LV ++ P ++ Y KL+A + R+W+ Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRALIELL----REWR 299 >gi|78066847|ref|YP_369616.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967592|gb|ABB08972.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 297 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 141/291 (48%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F A +G+FT AA L LS S++S+ ++ LE E+G++LF+R R +TLT G Sbjct: 7 ISTFVRAAEAGNFTRAARLLQLSPSAVSKAVARLEAELGVRLFHRSPRQITLTGDGELFF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + + L +S GK+R+ + GQ +L L ++L +P + I+L Sbjct: 67 AVCRQGMTDIADARSRLAGASQPWRGKMRLCVPVSFGQYVLAPALGDWLGAHPGLDIELA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D++ + D A+ L + + S L+ R L A+P YL++ P + +L Sbjct: 127 LTDRHVDMTAERFDLAVMLGE-VPDSRLVARPLPAHRFVTVASPAYLQSRGVPDTPDDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H + + + D+ ++ D+ P+G ++ V++ L++ + G GI Sbjct: 186 NHTCLRYVMVNSGQFRDWMFVRGGDQYSHFPVGP--LASDHVSALLALSEA---GGGILQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P Y+V + LV ++ D + + Y +A + + + + +F+ Sbjct: 241 APHYVVAPSLAAGRLVPVLSDFKSIGAPLSVVYEKARQASARTRLAADFLL 291 >gi|28900861|ref|NP_800516.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260879228|ref|ZP_05891583.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|28809307|dbj|BAC62349.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus RIMD 2210633] gi|308094076|gb|EFO43771.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] Length = 300 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA + L++S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 5 DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 VY + T + + SG ++I G+ +L G + EF YPDI I Sbjct: 65 FFVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI + D AIR + SSLI RKLV + A+P YL P E Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIE 183 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L KHN + + E D + TVD L N+ ++ +LG Sbjct: 184 LTKHNCLVYSYQETGAREWAFKAGDKMYQVTVD--------GNLCTNNSSALRNVALLGQ 235 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+ +P +V ++ +L+++ ++ +Y YP + K+K F + ++ Sbjct: 236 GVIYVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290 >gi|317046798|ref|YP_004114446.1| LysR family transcriptional regulator [Pantoea sp. At-9b] gi|316948415|gb|ADU67890.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 9/247 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L V+A GSFT AAE+L +S++++S++I LE G+ L R R + LT G Sbjct: 10 WVHLHWLTVLAELGSFTRAAERLDVSKAAMSQKIKELEQMAGVALVQRTTRSVRLTSAGE 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 KL + + ++E + +++ + G +R++ + + L L +FL YP ++I Sbjct: 70 KLVDELRDPFARIEQSFFSVRDEAGPVRGMVRVSAPVAFARQQLVPILGDFLREYPQVRI 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL + ++ + + + D AIR + + + + L A+P YL+ C P + Q Sbjct: 130 QLDVTDRLVSLGSEGFDLAIRHSQQLPETH-VALPLCETQTLLVASPAYLRECGTPQTPQ 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLGSG 240 L +HN + + P+ +E W GE RI N+ SI + G G Sbjct: 189 ALQQHNCLYY----PRGLESPQWRFRPQNDGGETVQVRIQGNFATNNSESIRDAALQGIG 244 Query: 241 IALLPDY 247 IA+LPD+ Sbjct: 245 IAMLPDF 251 >gi|194433835|ref|ZP_03066109.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012] gi|194417938|gb|EDX34033.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012] gi|320180228|gb|EFW55163.1| LysR family transcriptional regulator YcjZ [Shigella boydii ATCC 9905] gi|332098084|gb|EGJ03057.1| hypothetical protein SD15574_0411 [Shigella dysenteriae 155-74] Length = 299 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQLI Sbjct: 69 SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H + +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAVNL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074981|gb|ADJ64380.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 21/299 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V SGSF A + S+ ++SRQ+S LE +GI+L +R R L+LT++G Sbjct: 7 MQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRVYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ ++ + E+ +S + G+LRI D G L +F +P I + + Sbjct: 67 ARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLITLNIT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ + D AIR+ + S ++ R L + M A AAP +L P + EL Sbjct: 127 LSDRTIDLLEEGFDMAIRI-SALGDSRMVARPLAPVRMIACAAPEFLARHGTPGTPAELR 185 Query: 188 KHNLITF-----GDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240 + I++ GD +W V + R+ S + VN+ + + G G Sbjct: 186 DYPFISYSYRAGGD---------DWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 IA+ PD+IV LV + E T V+ YP K++ R+F+ + R Sbjct: 237 IAIQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQFR 295 >gi|319796026|ref|YP_004157666.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598489|gb|ADU39555.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 315 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 14/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F + +GS + AA ++ +Q ++SR++ LE +G++L R + LTE G + + Sbjct: 14 MQTFIHIVEAGSLSAAALRMDATQPTVSRRLQALERSLGVRLLRRSTHAMKLTEDGERCY 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + +L+ +P G LR+ LGQ LL G L ++L YP + ++ + Sbjct: 74 ERAKELIANWRAFEADLRGVGDEPEGTLRVVAPHALGQRLLVGPLADYLRAYPRVSVEWL 133 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D + DCAI++ + + + + KL + AAP L+ + P EL Sbjct: 134 LHDRRPDFIAEGVDCAIQVGE-VTDTMAVAIKLSEVPRVVVAAPSVLEGRKPPTHASELA 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243 + + N + RP GE P CL +S ++ +G G + Sbjct: 193 ELPWLALRTFY------RNEVQLTHRPSGEIARVPIRPCLSTDSLYALHSAAAMGLGACI 246 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +++ D+ LV+++ VY Y A +L+ F + L D Sbjct: 247 GSAWLMNDDIAAGRLVQLVPQWHAAPLPVYLTYSPARFQPARLRRFIEMVRLAMAD 302 >gi|227823412|ref|YP_002827385.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] gi|227342414|gb|ACP26632.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 317 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 128/267 (47%), Gaps = 24/267 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF G F+ AA ++ S++S+ + LE +G++L R R L LT +G Sbjct: 11 EMEVFAKAVELGGFSAAARHFRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H T+ + ++ + + P+G++R+ G ++L + EF +P + +++ Sbjct: 71 HERTTRILADIDEAE-RCASAGESPTGRVRLNVNASFGTHILMPLVPEFRARFPAVTLEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + +D+ AD A+R P++ S+LI RKL M AAP Y++ P S+ +L Sbjct: 130 VQTDAVVDLMEARADVAVRA-GPLKGSTLIARKLGATRMMIVAAPSYVERNGMPASLGDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGE----PRISCLQVNSYLSIMQYCVLG 238 H + F C ++ VD R GE P +QV+ + + G Sbjct: 189 RAHERLGF------C-----YMRVVDGWPIRDGGETIVLPASGAVQVSDGEGLRHLALAG 237 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV 262 +G+A L ++ V+++ L+ ++ED+ Sbjct: 238 AGMARLAEFAVREDVRAGRLLPVLEDL 264 >gi|74314225|ref|YP_312644.1| putative LysR type transcriptional regulator [Shigella sonnei Ss046] gi|73857702|gb|AAZ90409.1| putative transcriptional regulator LYSR-type [Shigella sonnei Ss046] Length = 323 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + +NLL L EFL +P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHNRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAMVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V++ L+ ++ ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGQLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|300704974|ref|YP_003746577.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299072638|emb|CBJ43988.1| putative transcriptional regulator, LysR family precursor [Ralstonia solanacearum CFBP2957] Length = 338 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 11/275 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF +G FT AAE+L LS+S++ + I+ LET +G++LF+R R LTE G Sbjct: 12 DGVAVFVEAVEAGGFTRAAERLALSRSAVGKAIARLETRLGVRLFHRTTRTQNLTEDGQV 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + L + +G+LR+ + G+ + L EF +P ++++ Sbjct: 72 YYERCLRAIEELRAAESLLDSGKQEVAGRLRVTMPVLFGRYCVAPILLEFARQHPKLELE 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D IR +++ L R L T AAP YL+ +P +I+ Sbjct: 132 LSFSDRPVDMIAEGFDLGIRNGALGEATGLCARPLATQPKVLCAAPAYLEMRGQPDTIEA 191 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H+++ G P + D + T R R L+V + V G GI Sbjct: 192 LANHDVLIHWRTGHPYPWLLPDTDGRLTEVRLASRLRFDDLEVTA-----DAAVAGMGIT 246 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYP 274 LP ++V D L + ED S + +P Sbjct: 247 WLPHWLVCHRIDAGALTVLWEDRPAASMDTHAIWP 281 >gi|123443908|ref|YP_001007879.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090869|emb|CAL13751.1| putative LysR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 297 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 6/281 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VAR SFT AA +L +SQS++S I GLE + ++L R R + TE G Sbjct: 5 NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L ++E+ L E +P+G +RI ++L LK FL YPDI Sbjct: 65 ERLANSLEPRLAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKSFLAEYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI D IRL + + + R + M A+P YL P + Sbjct: 125 VEITVDNTLTDIVTGRFDAGIRLGEQVAKDMVAVRIGPDMSMAVVASPSYLAKYGIPTTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H I +P + W R + L NS + V+G G+A Sbjct: 185 ADLQHHRCINM--RLPTMGGLYAWEFEKEGREVKVRVDGQLTFNSIRQRIDAAVIGFGLA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 ++P+ VK + NL+R++ED P Y YP ++T Sbjct: 243 MVPEDAVKAEIASGNLIRVLEDWCEPFPGYYLYYPSRRQHT 283 >gi|114330722|ref|YP_746944.1| transcriptional regulator, LysR family protein [Nitrosomonas eutropha C91] gi|114307736|gb|ABI58979.1| transcriptional regulator, LysR family [Nitrosomonas eutropha C91] Length = 310 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 145/298 (48%), Gaps = 24/298 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F + +GS + AA+++ +++S ISR++ LE +G++LF+R R + LT+ G Sbjct: 4 FENMNTFAYIVEAGSISAAADRMDVAKSVISRRLKELEAHLGVQLFHRTTRQMKLTDSGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + + + G L++A + G L + FL +P I+ Sbjct: 64 AFYEQSVRILADILEAEHAVSQFHGALKGNLKVAVPLSFGLMHLGPAITAFLHTHPGIKF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L +++ +D+ + D AIR+ + SSLI R L I A+P YL++ P + + Sbjct: 124 DLDFNDRQVDLLAEGFDLAIRIAS-LPDSSLIARHLAPIQAVMCASPAYLEHMGMPQTPE 182 Query: 185 ELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGE---PRIS-CLQVNSYLSIMQYC 235 EL +H NLI+ D NW V P G+ RI+ L+ ++ + Sbjct: 183 ELIRHRCLAYNLISNSD---------NW--HVYDPAGQLIKTRITPYLKASNGEFLRDAA 231 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G GI LLP +IV ++ L+ I+ + Y YP+ + +++AF +F+ Sbjct: 232 VDGLGIVLLPAFIVYREIEHGALLPILTEYHYSQLAAYAIYPQTRHLSQRVRAFVDFL 289 >gi|226945309|ref|YP_002800382.1| transcriptional regulator LysR family protein [Azotobacter vinelandii DJ] gi|226720236|gb|ACO79407.1| Transcriptional regulator LysR family protein [Azotobacter vinelandii DJ] Length = 300 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 130/280 (46%), Gaps = 21/280 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ L F VAR SFT AA QL +SQ+++S I +ET +G++L R R ++ TE G Sbjct: 6 YNDLLAFIAVARERSFTRAAAQLGVSQAALSYTIRTMETRMGVRLLTRTTRSVSPTEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + + ++E + + E KP+G LRI + + + +L L + L +P I + Sbjct: 66 RLLQSIVPHFQEIEAELMAVGELRDKPAGTLRITASENAAETVLWPRLAKLLPKHPLINV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ ++++ +DI + D IRL + R + + +P YL P Q Sbjct: 126 EVTVESRFVDIVAERYDMGIRLGDELARDMTAVRISPDMRVAIVGSPGYLAKHPAPRKPQ 185 Query: 185 ELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +L H L++ GDL + W + R+ L N I+ + G Sbjct: 186 DLADHVCINLRLMSHGDL-------YAWELKKGKQQVNVRVEGRLVFNGTRPILHAALAG 238 Query: 239 SGIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273 G+ LP+ YI K L R++ED +P+F Y Y Sbjct: 239 FGLGYLPEDMAQPYIAKG--RLERVLED-WSPAFPGYHLY 275 >gi|290510966|ref|ZP_06550335.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289775959|gb|EFD83958.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 305 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 11/282 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF V SG+F AA LH+++S++ + I+ LE +G+ LF R R LT Sbjct: 1 MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + E ++ + LQ + G+LRI+ + GQ + L YP Sbjct: 61 EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPVLFRLSQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L ++ +++ + D A+R+ + SL R L M AA YL+ P Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAVEYLRRQPPP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237 +I L +H T G L ++ + D GE R S L + + +I + Sbjct: 181 QTIAGLSEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTGLVQDDFAAIAAAVLQ 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 G GIA LPD++V + L +++ F ++ +PE Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEG 277 >gi|170690154|ref|ZP_02881321.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170144589|gb|EDT12750.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 300 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+++L F VA +FT AA QL +SQS++SR + LE +G+ L R R + TE G Sbjct: 3 DFNELAAFMRVAHERNFTRAAAQLGMSQSALSRMVRALEARMGVPLLTRTTRSVAPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L ++E L+ + +P+G +RI TT + ++ L YP+I+ Sbjct: 63 ERLLSSIGPRLREIEAELESLRAMTDRPAGSVRITTTDYAANEYVWPRVQTLLHQYPEIK 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L+ D D+ D D +RL + + R + M +P YL + + Sbjct: 123 IELVYDYGLSDLVADGYDIGVRLGDQVAKDMIAMRIAPDMTMSIVGSPEYLASRIVAKTP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L +HN I +P W + R + R+ L N+ +++ + G G+A Sbjct: 183 QDLTRHNCINL--RLPTMNSLLAWELSKGRRELQVRVEGQLTFNNVYQMVEAALGGFGLA 240 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P +V+ + L ++ED P+F + Y Sbjct: 241 YVPKKLVEPHVEAGRLAWVLEDWF-PTFVGHHVY 273 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151280992|gb|ABR89402.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 300 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 140/300 (46%), Gaps = 20/300 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V SGS + AA+QL LS+ +SR ++ LE G +L +R R L+LT G+++ Sbjct: 7 MQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTAAGAEML 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + P G LRI + GQ+ L + +++ LYP + + ++ Sbjct: 67 PRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPGVTVDML 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +++ + D AIR+ K + +LI R+L AAP YL +P ++L Sbjct: 127 VLDRVVNLVEERIDLAIRISKELD-PNLIARRLTVCRSVVCAAPAYLHEHGKPTQAEQLV 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 HN +T +G + WL D+ P+ + N S++ + G+GIA+ Sbjct: 186 LHNCLTHSYYGSV---------WLLERDKLPVNVAVKGNISANDASSLLPAALAGAGIAM 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 LP ++ + L+ ++ + F ++ Y L+ +F+ F DW Sbjct: 237 LPTFLAAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARFTDEPDW 296 >gi|87121646|ref|ZP_01077534.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86163178|gb|EAQ64455.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 294 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 127/277 (45%), Gaps = 18/277 (6%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR +F +A GSFT AEQ + S+S IS++I LE ++G +L +R R L LT Sbjct: 2 DKLRAIKLFVKLANLGSFTKVAEQTNTSKSMISKEIGRLEDDLGARLLHRSTRNLQLTHV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + E+ KL+ + + GKL+I + LG L +F+ PDI Sbjct: 62 GEGYLQRAIEILEKLDDADNFVSDLQHNVRGKLKINAPMALGITDLSVLFADFMHENPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +D+ D +R S+ + + L A+P YL + Sbjct: 122 ELDIHLGDESVDLVEQGFDLGLRASSRAIDSNYVGKPLTRFTYKVCASPEYLAKHKAINL 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240 Q+L +HN + K + W PI G L+VNS L +M G G Sbjct: 182 PQDLSEHNCFVYSYFQGKDV----W------PIEDGVAVKGNLKVNSTLFMMDAIKKGLG 231 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + +PD++ + D+ +V ++ + P T+Y YP Sbjct: 232 LGFIPDFVCQKMIDSGEVVEVLAEANKPRLTLYALYP 268 >gi|332163045|ref|YP_004299622.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604079|emb|CBY25577.1| transcriptional regulator, LysR family [Yersinia enterocolitica subsp. palearctica Y11] gi|325667275|gb|ADZ43919.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859552|emb|CBX69894.1| putative transcriptional regulator [Yersinia enterocolitica W22703] Length = 300 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 130/281 (46%), Gaps = 6/281 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VAR SFT AA +L +SQS++S I GLE + ++L R R + TE G Sbjct: 5 NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++E+ L E +P+G +RI ++L LK FL YPDI Sbjct: 65 ERLANSLEPRFAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKSFLAKYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI D IRL + + + R + M A+P YL P + Sbjct: 125 VEITVDNTLTDIVTGRFDAGIRLGEQVAKDMVAVRIGPDMSMAVVASPSYLAKYGIPTTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H I +P + W R + L NS + V+G G+ Sbjct: 185 ADLQHHRCINM--RLPTMGGLYAWEFEKEGRELKVRVDGQLTFNSIRQRIDAAVIGFGLT 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNT 280 ++P+ VK + NL+R++ED P Y YP ++T Sbjct: 243 MVPEDAVKTEIASGNLIRVLEDWCEPFPGYYLYYPSRRQHT 283 >gi|293392952|ref|ZP_06637269.1| LysR-family transcriptional activator [Serratia odorifera DSM 4582] gi|291424486|gb|EFE97698.1| LysR-family transcriptional activator [Serratia odorifera DSM 4582] Length = 254 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 1/184 (0%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +VA GS T AA++ L +SS+S++IS LE+ +G++L R R L LT G + Sbjct: 10 LFALVAECGSLTAAAKRAGLPKSSVSQRISQLESTLGLRLLNRTTRQLNLTFAGERYLVH 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 E+ E + LQ PSG+LR++T LG LL +F YPD+ +++ + Sbjct: 70 CQEMLSAAERADLALQRLRDNPSGRLRVSTPAGLGATLLPWLATDFQRQYPDVSLEVSVS 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D A+R KP Q SSLI R+L + A+P YL + Q+L H Sbjct: 130 DAMVDLVQEGFDVALRTGKP-QDSSLIGRRLGHAPRYLLASPAYLAQFPPIVHPQQLSLH 188 Query: 190 NLIT 193 I Sbjct: 189 RCIA 192 >gi|171322258|ref|ZP_02911098.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171092419|gb|EDT37771.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 296 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V +G+FT AA L L+ +++S I LE E+ +KLF R RG++LTE G Sbjct: 4 LHVFMSVVTAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQHYL 63 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126 + T Y ++ + L+E +P G LR+ T + L ++L + L F YP +++++ Sbjct: 64 QQTEPAYRQVMQARDALKEVRSEPGGLLRV-TALPLARSLVITPILAAFRARYPKVRLEI 122 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +N+ +DI+ D D IRL +Q + R + A+P YL P SI EL Sbjct: 123 RYENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGMPASIAEL 182 Query: 187 DKHNLITF 194 ++H I F Sbjct: 183 ERHACIRF 190 >gi|167617739|ref|ZP_02386370.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257140399|ref|ZP_05588661.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 298 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A +GSF A L LS + + + LET G++L R R +LTE G + Sbjct: 1 MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V + + P G LRI I G + L L ++ YP++QI L Sbjct: 61 ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D IR+ P+ S LI R L + A+P YL P +L Sbjct: 121 LSDRIVDVVDEGYDAVIRI-APLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLA 179 Query: 188 KHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 H + F P +E F + R+ S L VN+ ++ + G GI L Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSV---RVRSRLAVNNGAALRMAALDGLGIILQ 236 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V+D+ LVR++ P+ ++ Y + T KL++F Sbjct: 237 PAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSF 281 >gi|114049260|ref|YP_739810.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113890702|gb|ABI44753.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 305 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 144/293 (49%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SFT A+ L LS++ +S ++ ET +G +L R R + LT+ G + Sbjct: 8 MQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCY 67 Query: 68 RVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + Y +LE+ +LQ + V SG+LR+ + + +NL+ +L +F+ YP I++ Sbjct: 68 ERCKNLLTDYQELESL-FQLQATQV--SGRLRVDMSTGIARNLVLPHLPDFIEQYPQIEL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L ++ +DI + DC IR+ +Q +I +K+ M +P Y+ +P S++ Sbjct: 125 ELSSTDRKVDIVAEGFDCVIRVGS-VQQEGVIAKKIGYFKMLNCVSPSYIAKYGKPSSLE 183 Query: 185 ELDK-HNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL + H LI + + F +L+ + + P++ + VN+ + C+ G G Sbjct: 184 ELSQGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKL--ITVNNADAYSAACLAGLG 241 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I P+ V L+ I+ D PS V YP + +L+ F ++ Sbjct: 242 IIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWL 294 >gi|330949902|gb|EGH50162.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae Cit 7] Length = 297 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L ++ S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNLRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +PD + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|330807386|ref|YP_004351848.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375494|gb|AEA66844.1| Putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 303 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 127/262 (48%), Gaps = 13/262 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L++F V GS + AAEQ+ + S++SR +S LE ++ L R R + LT Sbjct: 1 MKARSDELQIFVCVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + +++ + L P+G+LRI + + ++ EF YP Sbjct: 61 EEGKYFFEQAKGILDQMDELEERLSSRQKNPAGRLRINAASPFMLHAIVPHIDEFRRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DIQ++L ++ ID+ D AIR+ + S+L R L +H A+P YLK P Sbjct: 121 DIQLELNSNDLIIDLLEQSTDIAIRI-GTLTDSTLHARSLGCSPLHILASPAYLKQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATV--DRPIGEPRISCLQVNSYLSIMQYCV 236 S+ EL H L+ F E N W L V DR + +P IS +S ++ + Sbjct: 180 SSVAELAGHALLGFAQ-----NEGLNQWPLRHVHGDRWLIQPAIS---ASSGETVRHLAL 231 Query: 237 LGSGIALLPDYIVKDNPNLVRI 258 G GIA L D++ +++ R+ Sbjct: 232 QGQGIACLSDFMTREDIRAGRL 253 >gi|227113195|ref|ZP_03826851.1| hypothetical protein PcarbP_09540 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 293 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 10/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V S T AAE+L +S++ ++R ++ LE+ +G +L +R R LT G Sbjct: 1 MKVFVTVVTHKSQTAAAERLDMSRAMVTRYLAELESWLGARLMHRTTRRFGLTPTGEACL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV +++E + E + +P+G LRI + L Q L L ++ YP ++I LI Sbjct: 61 LQCKEVLNRIELLEAESKVDETEPNGLLRITASSWLWQTHLSSALTAYMARYPAVKIDLI 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ D D AIR+ ++ LI +K T H A+ YL P +L Sbjct: 121 LGEQRLNLVEDSIDLAIRITSDLE-PGLIAKKFATCHTVICASAAYLTRNGTPEHPSDLT 179 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN +T F W + P L N +M + G GIA LP Sbjct: 180 AHNCLTH-----VYSTKFEWQFRHQNELYSVPISGSLSTNEGNVLMDVALQGMGIAKLPL 234 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ +N +L+ ++ D + +Y Y + L+A +F+ Sbjct: 235 YLAAPHLENGSLIHLLPDYKSHEMGIYGVYTSRQFMSKALRALLDFL 281 >gi|161506079|ref|YP_001573191.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867426|gb|ABX24049.1| hypothetical protein SARI_04266 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 303 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 130/286 (45%), Gaps = 11/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQYGAPEKPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLM 236 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRN 288 V D N R +++ P + VY Y E K K++ N Sbjct: 237 WVIDEIN--RSELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 280 >gi|121726627|ref|ZP_01679863.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|147672094|ref|YP_001215024.1| LysR family transcriptional regulator [Vibrio cholerae O395] gi|262168889|ref|ZP_06036583.1| transcriptional regulator [Vibrio cholerae RC27] gi|121630933|gb|EAX63313.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|146314477|gb|ABQ19017.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|227015702|gb|ACP11911.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|262022588|gb|EEY41295.1| transcriptional regulator [Vibrio cholerae RC27] Length = 301 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ P+++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPEVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y C +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H +T G + + ++ P+ LQ + +++ + +GI +P Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQALEVPVD----GDLQCKNGRVLVRAALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|260432709|ref|ZP_05786680.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] gi|260416537|gb|EEX09796.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] Length = 292 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 8/295 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R I +E + +KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIDAIEARLKVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L+ SG+L + T++ L+ L F +PD+ Sbjct: 63 EDLLRVAQATEDQFNQLVGRLKGRGDDVSGEL-VVTSLAALAPLVVPTLTAFQQDHPDLI 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ + A AIR P Q +++Q +T + YA+ Y+ P Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAAPDQPDNVVQ-PFMTQEVGLYASQDYIARRGLPEG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++ H + D F+ + P C + S+ + + G+GI Sbjct: 181 VEDFPNHAFVGADD--ENSRAPFSRWLRANVPAEAITFRC---SDNFSVAEAVLAGAGIG 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + + +P L +ME + + ++ L T K++ F F+ +ARDW Sbjct: 236 FMARWEAARHPQLQEVMEPLPEWAGNLWLVTHVDLHRTAKVQTFLKFLKEQARDW 290 >gi|170768885|ref|ZP_02903338.1| putative HTH-type transcriptional regulator YcaN [Escherichia albertii TW07627] gi|170122433|gb|EDS91364.1| putative HTH-type transcriptional regulator YcaN [Escherichia albertii TW07627] Length = 309 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 153/300 (51%), Gaps = 29/300 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++ R+GSF+ AA ++ ++++++S+ + LE + KL YR R ++LTE+G +L+ V Sbjct: 14 FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYDVL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +++ ++ ++ ++P+G LRI ++ + L++ ++ EFL YP +I+LI+D+ Sbjct: 74 VSAFGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHICEFLTRYPKTKIELIMDD 133 Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +I + D IR + + S LI KL+T+ A+P YL+ P + Sbjct: 134 GLSNIIAEGCDAGIRPGQGLDEHMTAVPVSPLI--KLITV-----ASPDYLRKYGIPETP 186 Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 EL HN + T G L P +F++++ + N S+++ + G Sbjct: 187 YELSNHNCLRLRHKTSGALSPW---EFSYISGNNEKFEIEASGRYIANDDESMIRMAING 243 Query: 239 SGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +GI D+ + D L I++D V P F +Y ++ K++AF +F+ K Sbjct: 244 AGIIQHLDFAIAEQIDAGKLQPILQDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 301 >gi|148975237|ref|ZP_01812161.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] gi|145965161|gb|EDK30411.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] Length = 305 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 135/287 (47%), Gaps = 10/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AEQ +L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + + SG ++++ G +L + EF ++P + + Sbjct: 64 ILHGAKNVKQATQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D D IR ++ SSLI R ++ A+P Y+ +P+ ++ Sbjct: 124 MSLDNRFVDLVEDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMLPKD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RIS-CLQVNSYLSIMQYCVLGSG 240 L +HN + + E + +L + D R+S ++ ++ + + G G Sbjct: 183 LVQHNCLQYAYQTTGASE-WQFLHSKDGCTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +A +P +V N LV I D++ +Y YP + K+K Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIK 288 >gi|222035231|emb|CAP77976.1| Uncharacterized HTH-type transcriptional regulator [Escherichia coli LF82] Length = 299 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIRT-GALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|86751608|ref|YP_488104.1| LysR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574636|gb|ABD09193.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris HaA2] Length = 308 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 134/265 (50%), Gaps = 8/265 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F GSF+ AA++L L Q ++S++I+ LE E G +LF R+ R LT T + + Sbjct: 5 DCLRAFVKTMEGGSFSGAAKELGLGQPAVSKRIALLEKEFGSQLFMRNTRKLTPTREAHR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +E + + E+ P+G LR+ G++ + ++++L YP +++ Sbjct: 65 IYDLARQALSCIEMARASIAEAPAVPTGMLRLGVPSSFGRHYIMPVIEQYLRDYPQVKVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +++ D + A+R+ ++SSSL R++ + A P YL+ +P + Sbjct: 125 IRFSEQTVNLVEDGIELALRIGD-LESSSLKARRIGLVRRFLVATPAYLRRQPQPQLPGD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L + I + L P F+ + + R + + S + V+ ++ Q + G+A+LP Sbjct: 184 LKNLHCIAYARLSPANQWAFD--SELGRHVVQISASIM-VDDADAMKQAVLQNLGVAILP 240 Query: 246 DYIVKDNPNLVRIME-DVITPSFTV 269 + D VR E +++ P F V Sbjct: 241 AWSAADA---VRSGEMEIVLPEFAV 262 >gi|239500869|ref|ZP_04660179.1| transcriptional regulator [Acinetobacter baumannii AB900] Length = 298 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 140/292 (47%), Gaps = 14/292 (4%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ FY+ VA+ SF+ A QL L +S+++ I LET G++LF+R R ++LT+ Sbjct: 2 DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + E + +Q G L+I+ + ++ L +F YPDI Sbjct: 62 GQRILPECQNLLLDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + D+ DC +R+ + + +SSLI R + + M A+P YL++ P Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGIPEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + +L++H LI + + + +F + G + S L VN+ + + G GI Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQG------GTVMMDSALSVNNTEAYIAAACAGLGI 234 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y V+D LV ++ PS + YP +L+ F +++ Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMSWV 286 >gi|91781334|ref|YP_556541.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693994|gb|ABE37191.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 290 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 141/291 (48%), Gaps = 17/291 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ +R F VAR G+ + AA L + +++SR++S LE E+ +L R R LT Sbjct: 2 FDWENVRHFLAVARIGTLSGAARSLKVDHATVSRRLSALEDEIKTRLIERLPRACKLTLI 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + + + + S SGK+ ++ L + L +L +F ++P + Sbjct: 62 GQRVFELAQGMEEDAYAIERFVDASRSPLSGKVSLSAPPVLVAHFLAKHLADFRRVHPGV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ + + + I +S AD A+RL +P + +S++ RKL + YA+ Y + P S Sbjct: 122 QLSVSGEARQISLSRREADVALRLVRPEEGTSVV-RKLGRMSFDLYASRDY-PHLHNP-S 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSG 240 E ++ F D M WL +V R G P I+C +N +L+ Q G+G Sbjct: 179 AWEFISYD-AGFTD-----MPQQKWLMSVAR--GRP-IACEISDINGHLAATQ---AGAG 226 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +A LPD++ + L R+ D S ++ L+ + ++A +F+ Sbjct: 227 VAGLPDFLADTDAKLQRVAYDGEPFSRDIWLAVHRDLRRSPHVRAVMDFLL 277 >gi|66045593|ref|YP_235434.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63256300|gb|AAY37396.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|330973190|gb|EGH73256.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 301 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 10/293 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RV+ V +GS T AA+ +S + + + LE +G+ L R R LTE G+ Sbjct: 4 FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + EV + ++ +++ P+G LRI + G +L L EF +P++++ Sbjct: 64 AYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L N+ +D+ + D AIRL +SS LI R L + AAP YL P + Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPTHPE 183 Query: 185 ELDKHNLITFGDLIPKCME----DFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +HN + F P E W T D + + N+ + Q G Sbjct: 184 DLREHNCLAFA--YPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAGM 241 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ +LPD +V+ + L + D P + Y + KL++F + Sbjct: 242 GVVMLPDALVQRDLQEGRLFALFPDYHLPRRPMNLLYVQDRYRLPKLRSFVEY 294 >gi|74312300|ref|YP_310719.1| putative LysR type transcriptional regulator [Shigella sonnei Ss046] gi|82544216|ref|YP_408163.1| transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|157155739|ref|YP_001462638.1| LysR family transcriptional regulator [Escherichia coli E24377A] gi|209918573|ref|YP_002292657.1| putative transcriptional regulator [Escherichia coli SE11] gi|218553887|ref|YP_002386800.1| putative nucleic acid-binding regulator [Escherichia coli IAI1] gi|256018419|ref|ZP_05432284.1| putative nucleic acid-binding regulator [Shigella sp. D9] gi|260867777|ref|YP_003234179.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O111:H- str. 11128] gi|293433692|ref|ZP_06662120.1| HTH-type transcriptional regulator ycjZ [Escherichia coli B088] gi|300818949|ref|ZP_07099153.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300822502|ref|ZP_07102641.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300904981|ref|ZP_07122799.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300926719|ref|ZP_07142494.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|301307033|ref|ZP_07213071.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|301326934|ref|ZP_07220226.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|307309913|ref|ZP_07589563.1| transcriptional regulator, LysR family [Escherichia coli W] gi|309796945|ref|ZP_07691346.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|331677116|ref|ZP_08377812.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|332279471|ref|ZP_08391884.1| transcriptional regulator [Shigella sp. D9] gi|73855777|gb|AAZ88484.1| putative transcriptional regulator LYSR-type [Shigella sonnei Ss046] gi|81245627|gb|ABB66335.1| putative transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|157077769|gb|ABV17477.1| transcriptional regulator, LysR family [Escherichia coli E24377A] gi|209911832|dbj|BAG76906.1| putative transcriptional regulator [Escherichia coli SE11] gi|218360655|emb|CAQ98216.1| putative nucleic acid-binding regulator [Escherichia coli IAI1] gi|257764133|dbj|BAI35628.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O111:H- str. 11128] gi|291324511|gb|EFE63933.1| HTH-type transcriptional regulator ycjZ [Escherichia coli B088] gi|300403130|gb|EFJ86668.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300417295|gb|EFK00606.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300524918|gb|EFK45987.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300528410|gb|EFK49472.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300837751|gb|EFK65511.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|300846405|gb|EFK74165.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|306909631|gb|EFN40125.1| transcriptional regulator, LysR family [Escherichia coli W] gi|308119473|gb|EFO56735.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|315060583|gb|ADT74910.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315254372|gb|EFU34340.1| LysR substrate binding domain protein [Escherichia coli MS 85-1] gi|320184454|gb|EFW59261.1| LysR family transcriptional regulator YcjZ [Shigella flexneri CDC 796-83] gi|320199369|gb|EFW73960.1| LysR family transcriptional regulator YcjZ [Escherichia coli EC4100B] gi|323179708|gb|EFZ65269.1| hypothetical protein ECOK1180_1453 [Escherichia coli 1180] gi|323185504|gb|EFZ70865.1| hypothetical protein ECOK1357_0866 [Escherichia coli 1357] gi|323378855|gb|ADX51123.1| transcriptional regulator, LysR family [Escherichia coli KO11] gi|323947719|gb|EGB43722.1| LysR substrate binding domain-containing protein [Escherichia coli H120] gi|324117476|gb|EGC11382.1| LysR substrate binding domain-containing protein [Escherichia coli E1167] gi|331075805|gb|EGI47103.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|332101823|gb|EGJ05169.1| transcriptional regulator [Shigella sp. D9] Length = 299 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|226952233|ref|ZP_03822697.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294648821|ref|ZP_06726278.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|226837071|gb|EEH69454.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292825313|gb|EFF84059.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 293 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 20/303 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L+ F V+AR+ + T AA + + S+++R+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLQFFLVLARTKTLTSAARIIGVEHSTVARRIQALELALGTTLFKREASGYELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G L +V ++E +++++ G++RI T G L L EF + YP Sbjct: 61 FEGLAL---VPQV-EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIRYP 116 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I LI K I +S AD + + +P +I R L + Y + +YL N Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSKNYLANTPPI 175 Query: 181 LSIQELDKHNLITF-GDLI--PK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 +++L +H + + DL+ P+ C+E T + + +S L+ Sbjct: 176 RRLEDLTQHRFVNYIDDLVYSPELYCLERLPLKLTAN----------FRSSSILAQQIAV 225 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+G+A+LP ++ D P L ++ + + + T + L++ ++K +++ +A Sbjct: 226 SAGAGLAILPKFLADDKPELETVLAEQVRFNHTFWMLTFVDLQHEPRIKLVWDYLRKQAD 285 Query: 296 DWK 298 ++ Sbjct: 286 QYQ 288 >gi|167033101|ref|YP_001668332.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859589|gb|ABY97996.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 298 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/290 (23%), Positives = 143/290 (49%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V +GSFT AA++L +S+ S+SR++ LE +G++L R R L T G Sbjct: 8 YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +++ + ++ + G LR++ + + L L EFL L+P + + Sbjct: 68 HYYQSALRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMSHLGCLLTEFLQLHPLVDV 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ SSLI R++ + A+P YL+ P+ + Sbjct: 128 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIANVERVYCASPAYLQARAVPVIPE 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H+ + +G W +++ ++ N+ + + G G+ Sbjct: 187 DLAGHDCLPYGH-----SRQVQWQFRQGGKAQAIQVTGRMRANNGELLRDAAIAGMGVTY 241 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV + LV ++E+ P+ + YP+ + ++ F +F+ Sbjct: 242 LPTFIVGQALADGRLVSVLEEWTPPALQLSAVYPQHRQVARPVQGFVDFL 291 >gi|115351385|ref|YP_773224.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172060423|ref|YP_001808075.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115281373|gb|ABI86890.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] gi|171992940|gb|ACB63859.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 313 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+P Y+ P + +L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPHTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 ++H I G + P D W + P G+ I +VN ++ G GI Sbjct: 186 EQH--ICLGMVAPGFHFD-EW--ALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + N+VR++ + + +Y YP K++ + +F+ Sbjct: 241 GLPLYSAIGGLRSGNIVRVLPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291 >gi|251790047|ref|YP_003004768.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247538668|gb|ACT07289.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 300 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 132/266 (49%), Gaps = 12/266 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A +GSF+ A L L Q ++SR ++ LE + +L +R R L+LT +G + + Sbjct: 10 FVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKLSLTPEGERYYLEA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +E ++ +E +V P+G LR+A L L ++ +FL YP++ ++L +++ Sbjct: 70 RRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLERYPELTLELQIND 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + I++ + A+ AIR+ ++ S++ R+L A+ YL P + ++L KH+ Sbjct: 129 RYINLVDEGAELAIRIGH-LEDSAMRARRLGMYERVCVASNKYLAKRGTPNTPEDLKKHD 187 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 + + L F + I P L+VNS ++ ++ G GIA P+++ + Sbjct: 188 CLIYTLLTTGATWRF-------QDINVPISGRLRVNSPEAVQKFVNAGVGIAQGPEWLFE 240 Query: 251 D---NPNLVRIMEDVITPSFTVYFCY 273 + N NL ++ D P + Y Sbjct: 241 EGLANGNLQLLLTDYTAPPVPIQAVY 266 >gi|118592757|ref|ZP_01550146.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] gi|118434527|gb|EAV41179.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] Length = 300 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 10/292 (3%) Query: 6 DKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L AR+GS +T AA L +S S+IS+ + LE ++G+ LF R R +TLT + Sbjct: 8 DRLTGLLAFARAGSLGSYTAAARSLSVSPSAISKSVQRLERQLGVPLFNRTTRSITLTNE 67 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G LH ++ E + + + +P+G LRIA + +G +++ L F + + Sbjct: 68 GRDLHERALKLLRDAEEIEQAAKAARSEPAGTLRIAASFPIGLHVIAPLLPVFRARHQKV 127 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L++ +D+ + D A+R+ + S L+ RKL + YA+P YL P Sbjct: 128 SIDLRLNDHRVDLIEEGIDLAVRIGD-LPDSRLLSRKLSPHRLCCYASPTYLAASGTPSH 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL + + + F W + DR + S + V++ +++ GSGI Sbjct: 187 PDELQSYETVNL--RYQSSGQLFRWPFRIGDRDVEILPSSSIVVDASEAVISTVAAGSGI 244 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ +LV ++ + + +P++ + ++AF N + Sbjct: 245 GMATSFMATSWVKRGDLVPVLSEFAVERHNITAVWPQSRRTNPAVRAFLNML 296 >gi|167644542|ref|YP_001682205.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167346972|gb|ABZ69707.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 301 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 6/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ +LR F VA+ SF AA +L ++ S++S I LE +G+KL +R R + TE G Sbjct: 6 EFGELRAFAAVAQERSFRRAATRLGVTPSALSHVIRALEERLGVKLLHRTTRSVAPTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L ++E E+ S P G+LR+ + ++ L +F+ LYPDI Sbjct: 66 AALLGRLVPAMTEIEHAVSEVGAFSDHPRGRLRLNLPRLAAEAVVLPKLGQFVQLYPDIV 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L++D+ DI + D IR + S R + + A+P YL + P + Sbjct: 126 LDLVIDDSMADIVAEGFDAGIRAGAHVHSDMTAVRLSPDLRVAVVASPTYLASRGAPSTP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 Q+L +H I + + + W + E RI + + VN I ++ + G G+A Sbjct: 186 QDLREHRCINY--RWSQAGAVYRWGFARADEVLEVRIEAAITVNDTNLITRFALDGLGLA 243 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + + +V ++ LVR+++D PS + Y + L+A F Sbjct: 244 YILEDVVAEHLAAGRLVRVLDDWCRPSSGFHLYYSGRRHMSAPLRAMIEF 293 >gi|330950566|gb|EGH50826.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae Cit 7] Length = 298 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 21/291 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA + SFT A ++L +S S I + I +E +G++LF+R R + LT +GS Sbjct: 9 VFVLVAETRSFTQAGKRLGISSSGIGKSIGRMEESLGVRLFHRSTRSIALTLEGSIFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LE ++EL + P G+LRI ++ L L+ + +F+ YPDI++ + Sbjct: 69 CRRILSELEAAEMELINARDLPRGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R P S L+ +++ + + AP Y P +L +H Sbjct: 127 DRMVDIIEEGFDVVLRTGDP-ADSGLMSKRMGSFQLRIVGAPDYFARHGIPRHPGDLSQH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQV------NSYLSIMQYCVLGSGIA 242 + P + +W P+ EP + L++ N+ ++ G GIA Sbjct: 186 ACLLHK--FPSSGKFEHW------PLRREPGVDDLELPQAMVCNTTEILVDVARAGLGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+++ + L+ ++ D + T +P + + +L+ F +F+ Sbjct: 238 CLPDFMISSAVRDGELIPVLADYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288 >gi|160895718|ref|YP_001561300.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361302|gb|ABX32915.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 337 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/298 (22%), Positives = 141/298 (47%), Gaps = 6/298 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++++F VA SFT AA+ + L ++S+S+ + LE +G +L +R R + LT+ G Sbjct: 34 EQMQIFSRVAEMASFTRAADSMGLPKASVSQAVQQLEARLGTRLLHRTTRRVQLTQDGQA 93 Query: 66 LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ ++ Q + Q++ P GK+R+ T L ++++ L + L +P +++ Sbjct: 94 CYERCQDLLADVDEFQGQFQQAGDAPLQGKVRLDMTTGLARHVVMPLLPQLLQSHPALEL 153 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + +D+ + DC +RL P+ L+ R L + + A+P Y++ P ++Q Sbjct: 154 ELSCTERRVDLVREGFDCVLRL-GPVDEPGLVARPLGLVALATCASPGYVQAHGLPATLQ 212 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H L+ + + F + +P P L VN+ + + C G G+ + Sbjct: 213 DLGGHRLVHYQRTLGARPLGFEY-EEDGQPRYLPMAGALTVNNAEAYLAACQAGLGLIQV 271 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 P V+ D LV ++ P +Y Y + + +++ +++ W Sbjct: 272 PRLAVQPLLDAGELVEVLPRHPPPPMPLYLIYAQRRQLPRRVRVLMDWLAEAVLPWTL 329 >gi|71278909|ref|YP_268060.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144649|gb|AAZ25122.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 318 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 140/294 (47%), Gaps = 16/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F G F AA L LS S++S+ ++ LE + IKLF R R + LT+ GS+ Sbjct: 7 LKLFVNAVDHGGFAAAANHLGLSASTVSKGMARLEDNLSIKLFNRSTRQVHLTDSGSRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +LE + +L++++ P G++++ + G+ + L+EF LYPDI + + Sbjct: 67 ITARRIVLELEQCEQDLKQTNDLPCGQVKVNLPVSYGRLYVMPLLQEFTQLYPDITLDVS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D IR K + L+ R L I A+P Y+ P E Sbjct: 127 FNDSYVDILEQGIDLTIRTGK-LDDQRLVARMLSPIDFILCASPAYIAANDFPACAAEYS 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H+ I F G L+P +++ + + + D G I VN ++ + C G G+ Sbjct: 186 QHSWIRFKYPQSGRLMPITVDEGHGVESYDP--GSQYI----VNDGEALAELCAQGLGLT 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LP +I +D + ++V I + S VY YP+ K+K ++ +K Sbjct: 240 QLPHFIARDWLKSKSIVPI-SSFLRSSEGVYCVYPKREFLPTKVKVLIEYLLMK 292 >gi|33596048|ref|NP_883691.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33601440|ref|NP_889000.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33573051|emb|CAE36693.1| probable LysR-family transcriptional regulator [Bordetella parapertussis] gi|33575876|emb|CAE32954.1| probable LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 306 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 27/300 (9%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L++F + GSF+ AA L + +++ + I LE +G +L R R + T G Sbjct: 4 FDSLQLFTRIVELGSFSRAAAALDIPRATATHAIKQLEARLGARLLDRTTRHVRATPDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V +L+ Q LQ + P G LR+ ++ + +F YP I + Sbjct: 64 AFYERCVHVLSELDDAQSSLQRVASNPRGLLRVDMHSTHATKIVLPRIDDFRARYPGIDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC IR P + SSL+ R+L + A+P YL P Sbjct: 124 AVSGGDRLVDLVREGIDCVIRAGNP-RDSSLVARRLAVMPQVICASPEYLAAFGAPRHPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI-----GEPRISCLQVNSYLSIMQ-----Y 234 EL H ++ F F A VD P+ GE I +N ++S+ Sbjct: 183 ELAAHRVVKF----------FAASAAVDYPLELRIGGE--IRAFALNGWISVSDAENYVV 230 Query: 235 CVL-GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 C L G G+ LP + V+D+ LV ++ D +P V YP + +++ F +++ Sbjct: 231 CALRGCGLIQLPRFHVEDDLRAGRLVEVLSDWPSPDLPVSALYPSHRHLSPRVRVFVDWL 290 >gi|27379132|ref|NP_770661.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27352282|dbj|BAC49286.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 297 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 141/301 (46%), Gaps = 25/301 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F + SFT AA L + +S+ S + GLE+ +G +L R R +T T G Sbjct: 4 FDAMRLFVRLVERQSFTAAAADLGIPRSTASEVLRGLESRLGARLLDRTTRHVTPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + ++E + ++++ +P G LRI L + + +L FL YP + + Sbjct: 64 DYYRRCVAILAEVEEAETAMRDA--RPRGLLRIDAHPLLTRTFILPHLPAFLARYPQLDL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ ++ +D+ + DC IR +P + S +I R+L TI A+P YL + P + Sbjct: 122 QIGQGDRLVDLVREGIDCVIRSGEP-EDSGMILRRLGTIAEITVASPAYLASHGVPRAPD 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 LD H ++ F GD++P L V P S ++VN+ ++ LG Sbjct: 181 TLDGHQMVAFVSSRTGDVLPLEFSVPGALHHVVLP------SRVRVNNSDTMADLARLGF 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+A P Y D+ LV ++ D PS T AL + A R +FL D Sbjct: 235 GLAQAPRYRFADDLASGALVEVLAD-YPPSPTPL----SALYLQNRQPALRLRVFL---D 286 Query: 297 W 297 W Sbjct: 287 W 287 >gi|218691525|ref|YP_002399737.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218429089|emb|CAR10033.2| DNA-binding transcriptional regulator, efflux system [Escherichia coli ED1a] Length = 309 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ IKL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQIKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240 >gi|191170396|ref|ZP_03031949.1| transcriptional regulator, LysR family [Escherichia coli F11] gi|300976740|ref|ZP_07173559.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|190909204|gb|EDV68790.1| transcriptional regulator, LysR family [Escherichia coli F11] gi|300308477|gb|EFJ62997.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|324014187|gb|EGB83406.1| LysR substrate binding domain protein [Escherichia coli MS 60-1] Length = 323 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|86358949|ref|YP_470841.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86283051|gb|ABC92114.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 351 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 8/288 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L + +++++ I GLE + KL R R + +T G+ + Sbjct: 55 MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 114 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE L S PSG+LRI + ++ L +F YPDI++ L Sbjct: 115 ERAAQLISELEELDGSLSNSQSLPSGRLRIEMSGAFADAIVVPALCDFYQRYPDIRLDLG 174 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D ++ DCA+R P SLI R++ + + A+P Y++ P ++L+ Sbjct: 175 VSDRTVDYLVENVDCALRAGTPT-DQSLIARRVSEMDLITCASPSYIQKFGMPERPEDLE 233 Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLP 245 H + + F + + PR C+ VN + + + G G+A +P Sbjct: 234 ATHYSVNYFRAQNNRTLPFEFRRGNEMVETTPR--CIASVNDSRTYLTAALTGLGVAQVP 291 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LVR++ D +Y YP + K++ F +++ Sbjct: 292 TFMAREPMRRGELVRVLPDWRRDPVPLYVVYPPNRHLSNKVRVFVDWL 339 >gi|83748573|ref|ZP_00945593.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207743288|ref|YP_002259680.1| hypothetical protein RSIPO_01457 [Ralstonia solanacearum IPO1609] gi|83724781|gb|EAP71939.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206594685|emb|CAQ61612.1| hypothetical protein RSIPO_01457 [Ralstonia solanacearum IPO1609] Length = 309 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + +FL +PD+ I L Sbjct: 66 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L AAP YL+ P ++ L Sbjct: 126 DLGDRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEHL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 HN + FG W+ D ++ ++ + ++C+ G G+A Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289 >gi|300704271|ref|YP_003745874.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299071935|emb|CBJ43264.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CFBP2957] Length = 309 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + +FL +PD+ I L Sbjct: 66 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L AAP YL+ P ++ L Sbjct: 126 DLGDRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEHL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 HN + FG W+ D ++ ++ + ++C+ G G+A Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289 >gi|300717464|ref|YP_003742267.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299063300|emb|CAX60420.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 305 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 143/295 (48%), Gaps = 18/295 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F + GS + A QL LS + +S++++ +E ++G++LF+R R ++LT++G Sbjct: 4 DIRDIALFNAIVACGSLSAAGRQLGLSLAVVSKRLTQMEQQLGVRLFHRTTRHVSLTDEG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +L++ + L K SG LRI ++ +GQ L + F+ + ++ Sbjct: 64 LVFTEHALRLQQELDSIESALSSRQGKASGTLRITSSHSMGQRWLSPIVTRFMQQHQSVK 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L ++ ID++ D AIR + S L+ R+LV A+P YL+ EPLS+ Sbjct: 124 LHLHLSDRVIDLAASGYDLAIRY-GALADSRLVARELVPNQRVLCASPAYLQQAGEPLSL 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238 +EL H+ I GD P F GE + S VN+ + + G Sbjct: 183 EELSAHSCIISGD-NPVTEWTFG--------AGESQRSVQINARFHVNTGEAAHGLALHG 233 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +GI + + V D+ LV+++ D P+ ++ + + +++ F +++ Sbjct: 234 AGIVVKSVWDVADDLKSGKLVQVLTDHPLPAAPLHAIWLNGKQQPPRVRLFVDYL 288 >gi|315500606|ref|YP_004089408.1| transcriptional regulator, LysR family [Asticcacaulis excentricus CB 48] gi|315418618|gb|ADU15257.1| transcriptional regulator, LysR family [Asticcacaulis excentricus CB 48] Length = 297 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 122/258 (47%), Gaps = 5/258 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ L +F VAR+G F A++ L S++SR I+GLE E+ ++LF R R L+LTE G Sbjct: 2 DFQALDLFVAVARAGGFAAVAKERFLDPSTVSRIIAGLEAELNVRLFQRTTRSLSLTEAG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + ++ E + +P+G LR+ ++ G + L +F +YP ++ Sbjct: 62 ALYLARMEPLLDEMRRAAAEASNVNAEPTGVLRLTASVAFGVQQIAPLLGDFCAVYPRLK 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + ++D+ + D AIRL P L+ +L + H A+P Y+ Sbjct: 122 LDCVFTDANLDLVQERMDLAIRL-APAIEGDLVATRLFSTRYHVVASPDYIARAAPIGEP 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 ++L H + G + F + E + + +++ L++ + G G A Sbjct: 181 RDLLTHRCLLLGLRAFRSTWKFK---NAQGALEEVSVDGDVVISTPLALRAAVLAGGGPA 237 Query: 243 LLPDYIVKDNPNLVRIME 260 LL +++ D+ R+++ Sbjct: 238 LLSGFLIADDLRAGRLVD 255 >gi|116255589|ref|YP_771422.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260237|emb|CAK03341.1| putative LysR family transcription regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 139/302 (46%), Gaps = 14/302 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA QL S +++SR+I LE + +KLF R+ RG LT Sbjct: 7 FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ ++ + E + +L S+ G +R++ L +F +P + Sbjct: 67 GTRFVETAEKMEQETERLRADLAAGSMAQRGLVRLSAPEGFANFFFATVLPQFAAQHPHL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + + +S AD ++ L +P + + KL H+ Y + YL Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEP-KGGAYFAEKLTDYHLQVYGSRDYLAKAAPITC 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLGS 239 ++L H +++ +E+ + +D +G+ PRI Q +S + + G Sbjct: 186 REDLLGHPFVSY-------IEEMIFAPGLDY-LGDVHPRIKPQFQSSSIFAQLTATRNGL 237 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDW 297 G+ +LP + P LVR++ + I + LK +++A +F+ ++ D Sbjct: 238 GLCILPYFFASRYPELVRVLPEEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGEDT 297 Query: 298 KF 299 +F Sbjct: 298 RF 299 >gi|87119070|ref|ZP_01074968.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86165461|gb|EAQ66728.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 298 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 11/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F +A++ + + A ++L LS + S I+ LE +G++L +R R ++LTE+G Sbjct: 4 DHLRLFVRIAQTHNISQAGQELGLSPAVASSHINKLEAGLGVRLIHRTTRKVSLTEEGIA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +E Q + PSG LR++ G+ + L +F+ YP+I++ Sbjct: 64 FFPHAEDVIASVEAAQASVGAGKSTPSGTLRVSAPASFGRMHVLPALTDFMARYPEIKVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ D AIR + ++ SSLI +KL + A+P Y+K P + Sbjct: 124 LKLSDTIVDLVEGGFDIAIRNSR-LKDSSLIAKKLANDNRILCASPSYIKKYGLPNAPAA 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L++H+ IT L C + T P+ + ++ ++ V G GI + Sbjct: 183 LNQHHCITLIGLEDWCFD------TPQGPVNIKTKGQFRTDNGEAVRDASVNGIGITIGS 236 Query: 246 DYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289 + V + LV IM + S T ++ YP + K++AF ++ Sbjct: 237 KWSVYQHLKSGELVHIMPEFPLISETAIWAVYPSSRLLAPKVRAFIDY 284 >gi|259415454|ref|ZP_05739375.1| LysR family transcriptional regulatory protein [Silicibacter sp. TrichCH4B] gi|259348684|gb|EEW60446.1| LysR family transcriptional regulatory protein [Silicibacter sp. TrichCH4B] Length = 310 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 116/254 (45%), Gaps = 11/254 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +L+ VAR GSF AA L S+ISR ++ E +G++LF R R L +T Sbjct: 1 MDISQLKTLLTVARLGSFAAAARALDQDPSAISRVVATAEARLGVRLFERSTRRLAVTGV 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +L+ E + + P+GKLRI ++ GQ L L EF YP+I Sbjct: 61 GRGYLDRIAPLVEELDLAAEEARSARRAPTGKLRITASVAWGQECLVPLLPEFRSRYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++LI + +D+ + D AIRL P L+ L A+P YL S Sbjct: 121 ELELIFTDTYLDLLAEGIDLAIRL-APAPQGDLVSTHLRCTRYLVCASPDYLARAGHLPS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238 L+ H+ + +P D W P G+ P + + S L++ Q +G Sbjct: 180 PAALNGHDCLR----MPLRGFDGTW--RFCSPSGQEETVPVTGKVVITSPLALRQAARVG 233 Query: 239 SGIALLPDYIVKDN 252 G LL D++V D+ Sbjct: 234 LGPTLLADWLVADD 247 >gi|227326291|ref|ZP_03830315.1| putative transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 295 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 25/289 (8%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA F+ + +L +S SS+ + ++ LET +G++LF+R R L LT +G K Sbjct: 10 IFVRVAERLGFSAVSRELGVSPSSVGKAVARLETRLGVRLFHRSTRTLALTAEGEKFLER 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++E ++E+ ++S P GKLR+ ++ +L + + +F+ YP +++ L Sbjct: 70 CRRILSEVEAAELEMTQASEMPHGKLRV--SLPRHSSLFEPVIADFMRRYPAVELDLDFS 127 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR + S L +R+L T AP Y K +P +L H Sbjct: 128 DRLVDVIGEGFDAAIRT-GTLADSGLKRRQLGTFRRVLVGAPEYFKEHGQPQHPMDLQAH 186 Query: 190 NLITF-----GDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + + G L +P E+ T D P+ L NS + G Sbjct: 187 ICLHYRFPSSGRLEQWPLPLAAEE----NTYDLPL------SLVCNSIEMRIHLARQAQG 236 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 IA LPD+ V + L I++D S ++ +P + + KL+AF Sbjct: 237 IACLPDFSVAKYLRDGRLQTILDDFTQNSSPMWILWPASRDLSPKLRAF 285 >gi|330985317|gb|EGH83420.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 305 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 137/292 (46%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ C PL++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLDSLTQITCASRDYLQRCGTPLNLP 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H +I + ++A VD+ + + VNS + C G G+ Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMAGGVEVDQALA----CSISVNSADGYVAACEAGFGL 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ P + YP + + +++ F +++ Sbjct: 239 IQVPRYHVAAQLRSGVLVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290 >gi|197295403|ref|YP_002153944.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|195944882|emb|CAR57489.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 301 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 22/304 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L L+ SS+ R + LE +G L R R +TL++ G+ Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V +L + + PSG LR++ + G L ++ F+ +P + + Sbjct: 64 VYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPKLDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ D AIRL ++ ++ R L T + A+ YL P + Sbjct: 124 DLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPATPA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------G 238 EL H + F + + F +G PR + + V L VL G Sbjct: 184 ELVDHACLRFHFGVDQQTWTF---------VGAPRTTQVVVTGRLKSNHSEVLREAALDG 234 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291 +GIALLPD++V + L R+ + +TP + Y + + ++ AF +F+ Sbjct: 235 AGIALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVE 294 Query: 292 LKAR 295 AR Sbjct: 295 SLAR 298 >gi|188993248|ref|YP_001905258.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris str. B100] gi|167735008|emb|CAP53220.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris] Length = 311 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 25/297 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AA+ L S ++I+RQ++ LE +G +L R R ++LT G+ Sbjct: 5 DAMRVFVAVAERSGFSAAADALDRSTANITRQVAALEQRLGTRLLNRTTRRVSLTSAGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + ++ PSG LR+ + G L L F +P +++ Sbjct: 65 YYQRCLQLLADLDDLEATVGAQALAPSGLLRVNAPVSFGIVQLAALLPGFRARFPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D A+R+ R+P + +LI R+L T+ + AAP YL P Sbjct: 125 LSLSDRLVDMVEEGFDVALRITRQP--APTLIARQLGTVRLVPCAAPAYLARAGTPQHPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRI---SCLQVNSYLSIMQYCV 236 +L H +C+ +++ T D P G+ + L+ N+ + V Sbjct: 183 DLAGH----------ECLL-YHYAPTGDDVRFHGPDGDVDVRLRGGLRANNGHVLSAAAV 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ + PD++ ++ LVRI+ D +Y Y K+++F +++ Sbjct: 232 AGQGVVIQPDFLADEHIAAGRLVRILPDYHLADIGIYAVYTSRSHLAPKVRSFIDYL 288 >gi|167579660|ref|ZP_02372534.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 298 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A +GSF A L LS + + + LET G++L R R +LTE G + Sbjct: 1 MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V + + P G LRI I G + L L ++ YP++QI L Sbjct: 61 ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D IR+ P+ S LI R L + A+P YL P +L Sbjct: 121 LSDRIVDVVDEGYDAVIRI-APLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLA 179 Query: 188 KHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 H + F P +E F + R+ S L VN+ ++ + G GI L Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSV---RVRSRLAVNNGAALRMAALDGLGIILQ 236 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V+D+ LVR++ P+ ++ Y + T KL++F Sbjct: 237 PAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSF 281 >gi|158422415|ref|YP_001523707.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329304|dbj|BAF86789.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 345 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 129/296 (43%), Gaps = 8/296 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F S SF+ AA +L +S + +S +I LE +G +LF R R ++LTEQG Sbjct: 40 ENMRAFTQAVESDSFSEAARRLRVSPNVVSHRIQVLEKHLGCRLFNRTTRRMSLTEQGRV 99 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E ++T + + E P G LR+ + LG+ LL + YP I ++ Sbjct: 100 YYETVTEALRLIDTAETSISELGALPRGALRVTAPLHLGRRLLAPMAARYQDAYPQIDVR 159 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L D+ + D A+RL + SS I RK+ + AAP YL P + Sbjct: 160 LRLSEHMPDLIAESIDVALRL-ATFEDSSTILRKVAEVDRILCAAPAYLDRHGVPEKPAD 218 Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + + + W+ T + + P L+ + + + V G GI + Sbjct: 219 LLNHQCLLMRHATSR---ELRWMLTDKGKDLAVPVAGHLEADDGDVLTVWAVEGRGIVVK 275 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P + V D LV ++E T+ YP K+K F + + AR + Sbjct: 276 PRFEVADALAAGQLVPVLERHPPRPMTLAVLYPARQLVPLKVKTFADMLVEDARRY 331 >gi|16762126|ref|NP_457743.1| DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766662|ref|NP_462277.1| DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143615|ref|NP_806957.1| DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415294|ref|YP_152369.1| DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181875|ref|YP_218292.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194443452|ref|YP_002042622.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447818|ref|YP_002047395.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471837|ref|ZP_03077821.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737638|ref|YP_002116315.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195873554|ref|ZP_02697316.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197248197|ref|YP_002148291.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264194|ref|ZP_03164268.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197301198|ref|ZP_02664450.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197364224|ref|YP_002143861.1| DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198246154|ref|YP_002217336.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387349|ref|ZP_03213961.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931143|ref|ZP_03221937.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354268|ref|YP_002228069.1| DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205357299|ref|ZP_02346679.2| HTH-type transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358026|ref|ZP_02575044.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205358779|ref|ZP_02659008.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359434|ref|ZP_02669976.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205360122|ref|ZP_02834737.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360585|ref|ZP_02684585.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|207858615|ref|YP_002245266.1| DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|25319790|pir||AD0911 probable LysR-family transcription regulator STY3547 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421927|gb|AAL22236.1| putative LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504429|emb|CAD07882.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139250|gb|AAO70817.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129551|gb|AAV79057.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129508|gb|AAX67211.1| putative transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194402115|gb|ACF62337.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406122|gb|ACF66341.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458201|gb|EDX47040.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713140|gb|ACF92361.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633113|gb|EDX51527.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095701|emb|CAR61270.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211900|gb|ACH49297.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242449|gb|EDY25069.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287886|gb|EDY27274.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940670|gb|ACH78003.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604447|gb|EDZ02992.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319910|gb|EDZ05116.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274049|emb|CAR39055.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322502|gb|EDZ10341.1| HTH-type transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328101|gb|EDZ14865.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332045|gb|EDZ18809.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336184|gb|EDZ22948.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340902|gb|EDZ27666.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348366|gb|EDZ34997.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710418|emb|CAR34776.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248530|emb|CBG26368.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995572|gb|ACY90457.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159916|emb|CBW19435.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320087814|emb|CBY97578.1| Uncharacterized HTH-type transcriptional regulator yhjC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716365|gb|EFZ07936.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131728|gb|ADX19158.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326625115|gb|EGE31460.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629391|gb|EGE35734.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990225|gb|AEF09208.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 309 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 4/248 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPL 241 Query: 247 YIVKDNPN 254 V D N Sbjct: 242 MWVIDEIN 249 >gi|188580815|ref|YP_001924260.1| LysR family transcriptional regulator [Methylobacterium populi BJ001] gi|179344313|gb|ACB79725.1| transcriptional regulator, LysR family [Methylobacterium populi BJ001] Length = 298 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 9/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ L F +AR G AA +L + +++SR+I+ LE + KLF R + G LTE Sbjct: 2 FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G KL + + K+ + L S +P+G++R+A+ + L EF P Sbjct: 62 GHKLFVIAEIIEQKMLSVPEALGLSDGGEPAGRVRVASMEGIAAFYLSARFAEFAAAMPG 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ + I+++ AD ++ P Q L R++ + +A+ YL P Sbjct: 122 IVVELVTERHLINLTKREADISVSFVPP-QGPRLKVRRVGAFRLALFASDRYLALRGRPE 180 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L H+ + + DL+ +E +WL V RP + S + G+G Sbjct: 181 TRADLQDHDFVDYVDDLV--AIEPVHWLLEVLRPSN----VVFRSTSMAAQQTAVAAGAG 234 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +ALLP + K NP LV ++ + I +Y E +++ G+++A F+ Sbjct: 235 LALLPLFSAKTNPALVPVLPEEIVVRRELYLAVHEDIEHAGRVRAVTRFL 284 >gi|152999185|ref|YP_001364866.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|151363803|gb|ABS06803.1| transcriptional regulator, LysR family [Shewanella baltica OS185] Length = 329 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 103/189 (54%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI +L + F+ ++P + ++ Sbjct: 64 FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I ++ +D+ D A + + + L+ R + T + YA+P YL P + +E Sbjct: 124 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGTPKTPKE 183 Query: 186 LDKHNLITF 194 ++ HN+ F Sbjct: 184 IEAHNVSMF 192 >gi|114769233|ref|ZP_01446859.1| transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] gi|114550150|gb|EAU53031.1| transcriptional regulator, LysR family protein [alpha proteobacterium HTCC2255] Length = 310 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 6/290 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+K R F V A GS + AA L ++Q ++ RQ+ GLE E+GI LF R RGL LT Sbjct: 20 VKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLQLT 79 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + + + S G++ I+ + LL + + +L P Sbjct: 80 PGGLELLDHVRVMGNAAGRVSMNALGQSQTLEGRVCISASETYAAMLLPPIIAKLRILEP 139 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI +++++ N+ D+ AD AIR +P + LI +K+ YA P Y++ P Sbjct: 140 DIHVEIVVSNQASDLRRREADIAIRNFRPTE-PDLIAKKVGEADAVLYATPDYIEKIGNP 198 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Q+L + + D ++ N L + E L SYL + + G Sbjct: 199 TMPQDLRHAHFVNL-DHAGMMIKALNKLGL---GLTEENFPLL-TESYLVMWELVRQGVA 253 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +L +I +P + R++ + F ++ L + +++ +++ Sbjct: 254 IGILDAHIGDADPIVRRVLPNFQPLIFPIWLVSHRELTTSRRIRRVYDYL 303 >gi|296104422|ref|YP_003614568.1| hypothetical protein ECL_04085 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058881|gb|ADF63619.1| hypothetical protein ECL_04085 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 295 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 147/291 (50%), Gaps = 19/291 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA +GSFT AAE + L+++ +S I LE E+G+ L R R LTLTE G+ ++ Sbjct: 9 MFVAVADAGSFTAAAESMGLTKAVVSFNIRQLEDELGVTLLLRSTRRLTLTEAGALFYQR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + E Q +++ + +G+LRI TT + G ++ L EF +P+++++ + Sbjct: 69 SVRLLQEAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQQHPELRVRHVSS 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDK 188 ++ D+ + D AIRL + S + + AAP +L N P+ S++ L + Sbjct: 129 SQHADLISERFDVAIRL-GTLADSRYHAALISNFTILPVAAPGWLAN--HPVESLEHLAQ 185 Query: 189 HNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I + +P + D N +A + PR L +S ++M + G G+A Sbjct: 186 AGWIVH-ERLPSPLHWQVKDADGNLVAFEIKK--APR---LYADSAQALMAFAHAGCGVA 239 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP+++V++ N LV ++ +Y YP+A K++ F +F+ Sbjct: 240 LLPEWLVRNALNSGGLVSLLPGYTFAQQGIYAVYPDAQHVPAKVRTFIDFM 290 >gi|330966209|gb|EGH66469.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 302 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R R L LTE+G H Sbjct: 10 IETFIAVANAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGVAYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + +LE + L +P+G+LRI G+ + + +F + ++ ++ Sbjct: 70 AVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRPRVT 129 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P I + + R L T + AAP YL+ P + ++L Sbjct: 130 FTDRFVDIIEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTFEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 +H I FG WL ++ E R + L + + + + GIA L Sbjct: 190 GRHACILFGR---GDGSTSPWLFVDEQGQQEARAVEARLVIGNGEAQVAAVTSAWGIAQL 246 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++KD LV I+ + T ++ +P ++ K++A Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQAL 291 >gi|159045746|ref|YP_001534540.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913506|gb|ABV94939.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 327 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 6/295 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE +G++LF R R L T+QG Sbjct: 22 DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLGVRLFQRTTRSLAPTDQGKT 81 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EV +E + ++ + P G L +A + +G+ L+ + FL LYP+++++ Sbjct: 82 FFGAACEVLEAVENAEAQVINMTDNPKGSLYVAAPLGVGRRLIAPQVPGFLELYPEVRMR 141 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D++ + D A L P + S+L RK+ + A+P Y+ P + Sbjct: 142 LRMTDRKVDLTTEGLDLAFFLGHP-EDSNLRIRKIADVRRVLCASPDYIARRGHPQNGDA 200 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L P E F W D+ R++ + + + + + G GIA+ Sbjct: 201 LVSEGHECLNLRFPGATE-FQWRLVTDQGPKRFRVAGRYESDDGDVLTDWALAGHGIAMK 259 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 P + V D + LV + ED + + + K + F +I K D Sbjct: 260 PVFEVTDHLQDGRLVPVCEDTPPEPIQMACLFTHRKRQDPKTRLFMEYIIEKISD 314 >gi|15598320|ref|NP_251814.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218890675|ref|YP_002439539.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254241818|ref|ZP_04935140.1| hypothetical protein PA2G_02535 [Pseudomonas aeruginosa 2192] gi|9949236|gb|AAG06512.1|AE004736_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126195196|gb|EAZ59259.1| hypothetical protein PA2G_02535 [Pseudomonas aeruginosa 2192] gi|218770898|emb|CAW26663.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 303 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 21/254 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V SG F+ AA + ++ S++S+ I+ LE +G +L R R L LT +G Sbjct: 11 ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + LE + E++ P G+LR+ + G + L + EFL +P++ + + Sbjct: 71 YERGVRILADLEEAERCASENAA-PRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +DI D A+R P++SSSL+ RKL + M AP YL P + Q L Sbjct: 130 VLTDEVVDILEQRTDVAVRA-GPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS----IMQYCVLG 238 HN + N++ T R GE + L N+ S + + V G Sbjct: 189 LGHNRL-----------GANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAG 237 Query: 239 SGIALLPDYIVKDN 252 G+A L + V+++ Sbjct: 238 LGLARLAAFQVRED 251 >gi|260599814|ref|YP_003212385.1| HTH-type transcriptional regulator YhjC [Cronobacter turicensis z3032] gi|260218991|emb|CBA34346.1| Uncharacterized HTH-type transcriptional regulator yhjC [Cronobacter turicensis z3032] Length = 299 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 11/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SFT AAE L L + S+SRQ+ LE+ +G +L +R R + LT+ G + Sbjct: 7 MRLFVRVAELESFTRAAETLSLPKGSVSRQVQALESALGTRLLHRTTRRVHLTQDGQVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ SG+LR+ + + Q+++ L EFL YP I ++L Sbjct: 67 ERARDLLANLDELDGLFLHDPASISGRLRVDMPVAVAQSVVIPRLPEFLHHYPGIALELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ + ++ S L+ R L + A+P YL P ++ +L Sbjct: 127 SSDRLVDVVREGFDCVVRVGQ-LKDSGLVARPLGKLSQVNCASPDYLARFGCPETLDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244 H L+ + + F + R G P L VNS + C G GI + Sbjct: 186 SHALVHYTPTLGTRPAGFE----IGRENGSEWIPTGGVLTVNSTETYQAACFAGLGIIQV 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P V++ + LV ++ V YP Sbjct: 242 PRIGVREALRSGKLVEVLPQYRAAPMPVSLIYP 274 >gi|28868824|ref|NP_791443.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852063|gb|AAO55138.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 302 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R R L LTE+G H Sbjct: 10 IETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGVAYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + +LE + L +P+G+LRI G+ + + +F + ++ ++ Sbjct: 70 AVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRPRVT 129 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P I + + R L T + AAP YL+ P + ++L Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTFEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 +H I FG WL ++ E R + L + + + + GIA L Sbjct: 190 ARHACILFGR---GDGSTSPWLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGIAQL 246 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++KD LV I+ + T ++ +P ++ K++A Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLSKVQAL 291 >gi|115360530|ref|YP_777667.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285858|gb|ABI91333.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 345 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 9/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VA GSFT AAE+L + + ++SR + LE ++ +LF R R LT +G + + Sbjct: 35 AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFYEN 94 Query: 70 TSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + V +E L+ P G +RI++ + G+ ++ L++F YPDI I L+L Sbjct: 95 CHQGVAQIVEAMNDMLELRQGPPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIIIDLLL 154 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 D++ ID+ + D + R + I+ SS+I R+L+ + M AAP Y+ P I++LD+ Sbjct: 155 DDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIEDLDR 213 Query: 189 HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I F + E +FN + + + R L N +++ + G+GIA + Y Sbjct: 214 HECINFRFASGRVFEWEFNVDGRMQKYLPTSR---LTFNDADLVLRSVLNGAGIAQMAGY 270 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++D + LV + + Y CY +++ F +F+ Sbjct: 271 QIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFM 316 >gi|319786571|ref|YP_004146046.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317465083|gb|ADV26815.1| transcriptional regulator, LysR family [Pseudoxanthomonas suwonensis 11-1] Length = 304 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 130/275 (47%), Gaps = 16/275 (5%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F VA G FT AA+ L L ++S+S + LE+ +G +LF+R R + LT G+ Sbjct: 8 RIFVRVAELGGFTRAADSLGLPKASVSGAVRRLESALGTQLFHRTTRRVQLTGDGAVFLE 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + E ++ + SG++RI + + + L+ L FL +P +Q++L Sbjct: 68 RCRDFLGEAEELHTMFRQEPQQLSGRVRIGMSGGMARQLVLPRLGAFLDAHPGLQVELGA 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + +D+ + DC +R + + SL+ R+L + A+P YL+ P ++++L Sbjct: 128 GERRVDVVREGYDCVVRTGE-VADPSLVARRLGMAPVATCASPAYLERHGVPRALEDLAS 186 Query: 189 HNLITFGDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H L+ F + E F + A+++ P + V++ + + + G G+ Sbjct: 187 HRLVQFAVAFGQKPEGFEYPLPDGGYASLEMP------GAVTVDNGEAYVGAALAGLGLI 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LP + V++ + LV ++ + V YP Sbjct: 241 QLPRFAVREALADGRLVEVLPRLPAAPMPVSLLYP 275 >gi|312968156|ref|ZP_07782366.1| uncharacterized HTH-type transcriptional regulator yhjC [Escherichia coli 2362-75] gi|312286981|gb|EFR14891.1| uncharacterized HTH-type transcriptional regulator yhjC [Escherichia coli 2362-75] gi|323189333|gb|EFZ74616.1| hypothetical protein ECRN5871_2477 [Escherichia coli RN587/1] Length = 299 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL +L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPHLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|317401669|gb|EFV82294.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/302 (25%), Positives = 144/302 (47%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA +GSF AA +L LSQ+++S+ I+ LET++ LF+R +R ++LTE G Sbjct: 6 DLEGWAIFAKVADTGSFAKAAAELSLSQATVSKTITRLETKMKTMLFHRTSRSMSLTESG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + E+ E S GK+R+A + G L L F+ +PD+ Sbjct: 66 YAALERAARILEEGEAVEAEVTEKSTSLRGKIRLAAPMSFGVTHLAPMLPPFMQAHPDVD 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ ++K D+ + D A+R+ + S+L+ R+L ++ + AP Y K P Sbjct: 126 LEIEFNDKQSDLVSERFDLALRISN-LVDSTLLARRLCSVRILLVGAPSYFKRAGRPKHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 ++L +H + + +W D+ GE S L VN+ ++ G G Sbjct: 185 RDLAQHTALQYM----YARNGSSWRFRHDK-HGEFSQSLPVQLNVNNAEALSPALQAGLG 239 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295 +AL P+++ ++ L M+D ++ P + +++A ++ L A Sbjct: 240 LALQPEFLAWEDLQSGALETAMDDWQVDPIALHIVTPPGRRRPARVQALIEYLAERLTAE 299 Query: 296 DW 297 W Sbjct: 300 PW 301 >gi|331657383|ref|ZP_08358345.1| putative transcriptional regulator LYSR-type [Escherichia coli TA206] gi|331055631|gb|EGI27640.1| putative transcriptional regulator LYSR-type [Escherichia coli TA206] Length = 299 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 128/287 (44%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D IRL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGIRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D + + L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKGKKLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|172065391|ref|YP_001816103.1| MarR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997633|gb|ACB68550.1| transcriptional regulator, MarR family [Burkholderia ambifaria MC40-6] Length = 410 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 15/291 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F +A GS + AA L+LS S++S+ ++ LE +G L R R LTLT+ G + Sbjct: 77 QMTIFVRIAELGSLSAAARDLNLSPSAVSKSLAQLEDRLGTLLIKRTTRSLTLTDAGRAI 136 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +ETT +++ P G LR+ ++ G L L +L +PD+ + Sbjct: 137 FARAGAILTDIETT-LDVAREGQLPEGILRLTCSLAFGCKQLTPVLGRYLGAHPDVAATI 195 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +++ + D A+R+ S RKL TIH A+P Y++N E + +L Sbjct: 196 ALDDRLANLAEENYDIAVRITANTD-SGYAARKLATIHWVYCASPRYVENHAEICAPDDL 254 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H + + P + W I ++ L NS L++ + + G G+A LP Sbjct: 255 MNHTCLVY----PAMTVNGAWTFRQHDQIRHIQVDARLTSNSSLALREAAIDGLGVACLP 310 Query: 246 DYIVKDNPNLVRIMEDVITP------SFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V + +++R ++ P S T+Y Y + +++F +F+ Sbjct: 311 TYLV--SADIIRGDLKLVVPQYKAAISHTLYAMYYRSKYANALIRSFIDFV 359 >gi|330501828|ref|YP_004378697.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328916114|gb|AEB56945.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 295 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 20/253 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V GS AAE + ++ S++S+QI LE G+ L +R R LTLTE G+ Sbjct: 6 RMALFATVVEKGSMVAAAEAMGMTASAVSQQIRRLEEATGVTLLHRTTRKLTLTEAGAAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + L E P G+LR+A + LL L L +P + + L Sbjct: 66 YESCRHIVELAQQAEQRLAEQRDAPVGELRVAAPVGFSGPLLCEALAPLLGAHPGLSLSL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ID+ D AIR+ + ++SSL+ R + M AAP YL P+ Q+L Sbjct: 126 FFQDEQIDLVESRIDLAIRVGRQ-ENSSLVARHVTDWRMLLCAAPAYLARAGVPVEPQQL 184 Query: 187 DKHNLITFG-DLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVLG 238 G D I +E L T+ P G E RISC N+ L+ Q+ + G Sbjct: 185 -------LGLDWIGLHLERSQHL-TLHGPSGAQQRLRLETRISC---NNILAARQFTLAG 233 Query: 239 SGIALLPDYIVKD 251 G++L P+ +++ Sbjct: 234 MGVSLQPEPEIRE 246 >gi|262281358|ref|ZP_06059139.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262257184|gb|EEY75921.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 293 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/309 (24%), Positives = 139/309 (44%), Gaps = 32/309 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L F V+AR+ + T+AA + + S+++R+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G L + ++E +++++ G++RI T G L L EF + YP Sbjct: 61 LEGMAL----VPLVEQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQYP 116 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I LI K I +S AD + + +P +I R L + Y + +YL Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSQNYLAQNPPI 175 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSYL 229 +++L +H + + +D + P + CL+ +S L Sbjct: 176 RGLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSIL 219 Query: 230 SIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G+G+A+LP ++ D P L ++E + + T + L++ ++K ++ Sbjct: 220 AQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWDY 279 Query: 290 IFLKARDWK 298 + +A ++ Sbjct: 280 LRKQADKYQ 288 >gi|73542229|ref|YP_296749.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72119642|gb|AAZ61905.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 302 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 17/296 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M FD + VF A G+ + AA L LS S+ S +++ LE +G +L +R R L+LT Sbjct: 1 MYFDLLDVAVFTRAASLGNLSAAARDLQLSTSTASARLARLEQTLGTRLLHRTTRRLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ E + + + + P G LR+ G+ + + FL YP Sbjct: 61 ADGERFIEHAQQLLATAEAAEQSVGKGARAPHGLLRVTAPASFGRQHVSPAIPAFLETYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ L L ++ + + D A+R+ + SSL+ R L AAP YL P Sbjct: 121 EIRLDLRLSDQVVPLVDAGIDVALRM-GALPDSSLVARALAPSRRVICAAPSYLAAHGIP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 +L HN + GD W D P+GE ++ L+V++ I V Sbjct: 180 KHPDDLRTHNCLILGD-------QSAW--RFDTPLGETAVTVHGNLRVDNGEVIRDALVA 230 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 G GIAL + V + LV ++++ + P+ +++ YP K +AF +F Sbjct: 231 GMGIALKSTWDVGALLRSGQLVTVLDEYPVLPAVSIWAVYPSRHLVPAKTRAFVDF 286 >gi|26250154|ref|NP_756194.1| putative transcriptional regulator YhjC [Escherichia coli CFT073] gi|227883681|ref|ZP_04001486.1| transcriptional regulator YhjC [Escherichia coli 83972] gi|300971328|ref|ZP_07171409.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|301046588|ref|ZP_07193729.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|26110583|gb|AAN82768.1|AE016768_186 Hypothetical transcriptional regulator yhjC [Escherichia coli CFT073] gi|227839261|gb|EEJ49727.1| transcriptional regulator YhjC [Escherichia coli 83972] gi|300301452|gb|EFJ57837.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|300411313|gb|EFJ94851.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|307555624|gb|ADN48399.1| hypothetical transcriptional regulator YhjC [Escherichia coli ABU 83972] gi|315295419|gb|EFU54749.1| LysR substrate binding domain protein [Escherichia coli MS 153-1] Length = 323 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLAMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|17546079|ref|NP_519481.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428375|emb|CAD15062.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 309 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 16/277 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + +FL +PD+ I L Sbjct: 66 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L AAP YL+ P +++L Sbjct: 126 DLGDRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 HN + FG W+ TV +G ++ + ++C+ G G+ Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQGGKTVTVKVG----GTMECTDGAVLREWCLQGHGL 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 A + V + LV +++ P ++ +P+ Sbjct: 238 AWRSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQ 274 >gi|261213090|ref|ZP_05927374.1| transcriptional regulator [Vibrio sp. RC341] gi|260838155|gb|EEX64832.1| transcriptional regulator [Vibrio sp. RC341] Length = 301 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE +G+ L R R L+LT+ G + Sbjct: 11 IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 R + +E + + + G+LRI + +G+ L+ F+ PD++I L Sbjct: 71 RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D A R+ K ++ +S + RKL I M A+P Y +P ++L Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLRGQPQHPKQL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + + T+D P+ LQ + +++ + +GI +P Sbjct: 190 TDHRCLT-GSVKRWSYQHKETKQTLDVPVD----GDLQCKNGRVLVRTALAHNGIIRVPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + LV + +D PS Y + +LK F F Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290 >gi|116051120|ref|YP_790049.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115586341|gb|ABJ12356.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 303 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 21/254 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V SG F+ AA + ++ S++S+ I+ LE +G +L R R L LT +G Sbjct: 11 ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + LE + E++ P G+LR+ + G + L + EFL +P++ + + Sbjct: 71 YERGVRILADLEEAERCASENAA-PRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +DI D A+R P++SSSL+ RKL + M AP YL P + Q L Sbjct: 130 VLTDEVVDILEQRTDVAVRA-GPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS----IMQYCVLG 238 HN + N++ T R GE + L N+ S + + V G Sbjct: 189 LGHNRL-----------GANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAG 237 Query: 239 SGIALLPDYIVKDN 252 G+A L + V+++ Sbjct: 238 LGLARLAAFQVRED 251 >gi|288933563|ref|YP_003437622.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288888292|gb|ADC56610.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 303 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 24/294 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V GSFT AA +L LS + + I+ LE+++ +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ + P+G LR++ G +++ FL +P + Sbjct: 62 GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIR+ + I L+ R L M AAP YL P + Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L H C+ W A ++ + R + L+ N ++ Q Sbjct: 181 PEDLADH----------LCLSHTVWTARNEWRLPGIEGEVRWKRDAILRCNDGYALRQAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G+G+ + P+ ++ D N +LVR++E V+ + + + KL F Sbjct: 231 IAGAGLLMQPEVLLADALANGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284 >gi|332284144|ref|YP_004416055.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330428097|gb|AEC19431.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 313 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 134/295 (45%), Gaps = 16/295 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE LHLS++++++ + LE + +KL R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAETLHLSKTTVTQLVQQLEARLRVKLLNRTTRKVNVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L + P G+LR+ +L L F YPDIQ+ Sbjct: 64 AYYERVLRLLADMDDAETSLSGALASPRGRLRVDVPSPFASMILVPALPAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLSI 183 L + ++ +D+ + DC +R + I + SL+ R + + YAAP YL R + S Sbjct: 124 HLGVSDRVVDLIDENVDCVVRGGE-ITNLSLVARHAADLPLAVYAAPSYLAAGRPDHPSE 182 Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 EL H ++ + P M V G P + N+YL+ + G Sbjct: 183 LELSHHRIVGLSWSGTRRIFPSTMCRDGESIHVQ---GRPALVVDDGNAYLAA---GLAG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G LP Y+ + + L+ + D +Y +P+ + KL+ F +++ Sbjct: 237 IGALWLPTYMAQAHVARGELIPLFTDWQLDPMPLYIAFPQNRHVSAKLRVFIDWL 291 >gi|257454513|ref|ZP_05619771.1| LysR-family transcriptional regulator [Enhydrobacter aerosaccus SK60] gi|257448075|gb|EEV23060.1| LysR-family transcriptional regulator [Enhydrobacter aerosaccus SK60] Length = 282 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 21/269 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF + GSFT AA+ L +S + S+ + LE V KL +R+ R L+LTE G + + Sbjct: 7 LQVFRTIVEKGSFTKAADALDMSLAMTSKHLQHLEAYVQAKLLHRNNRNLSLTEVGQQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L+ + + + SV P GKLRI + L +F YP I++ + Sbjct: 67 AEAVHALDILQQAKTKAHDGSVLPEGKLRIIAPVWFATPYFVNLLAKFQQDYPKIELTVD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ D+ + D A+R+ Q +LI + L I + A+P +L P S + L Sbjct: 127 LENRFTDLIAEGYDLALRVVNTPQ-DNLIVKPLGKIDFYYVASPRFLAQHEPPTSAEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +P + ++ +AT +P N+ + + Q + G G A+LP++ Sbjct: 186 N---------LPGILPNYTHMATTLKPYNSS-------NNTVMMAQMALTGMGAAILPEW 229 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCY 273 +++D LV++ E + S ++Y Y Sbjct: 230 LIEDEIAQGRLVKLFEQPFS-SVSIYAIY 257 >gi|218691805|ref|YP_002400017.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218429369|emb|CAR10186.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|312948080|gb|ADR28907.1| putative DNA-binding transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|320193967|gb|EFW68600.1| LysR family transcriptional regulator YhjC [Escherichia coli WV_060327] gi|324007326|gb|EGB76545.1| LysR substrate binding domain protein [Escherichia coli MS 57-2] Length = 323 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|331671856|ref|ZP_08372652.1| LysR-family transcriptional regulator [Escherichia coli TA280] gi|331070845|gb|EGI42204.1| LysR-family transcriptional regulator [Escherichia coli TA280] Length = 311 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 19 NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ + L+ LK FL Y +I Sbjct: 79 ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARTLVWPKLKPFLREYLEIN 138 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M AP Y P + Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P ++W +P+ L + + + G GIA Sbjct: 199 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 256 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ +V++ + L++++++ P+F Y+ Y Sbjct: 257 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 289 >gi|298485382|ref|ZP_07003472.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160080|gb|EFI01111.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 298 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 15/257 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+VF V SGS + AAE++ + S +SR +S LE ++ L R R + LT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++E+ + L S P+G+LRI + + ++ EF YP Sbjct: 61 EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++L D+ ID+ D AIR+ + S+L R L + ++ A+P YL+ P Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRI-GALPDSTLHARSLGSCPLNIVASPAYLQRHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WL---ATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + ++L +H L+ F + E N W A DR +P IS S ++Y V Sbjct: 180 KTAEDLAQHVLVGFTHV-----ESLNQWPLRHAEGDRLSIKPAISA----SSGDTLRYLV 230 Query: 237 L-GSGIALLPDYIVKDN 252 L G GIA L D++ D+ Sbjct: 231 LEGVGIACLSDFMTNDD 247 >gi|293412952|ref|ZP_06655620.1| LysR family transcriptional regulator YhjC [Escherichia coli B354] gi|291468599|gb|EFF11092.1| LysR family transcriptional regulator YhjC [Escherichia coli B354] Length = 323 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++GI+L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGIQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 314 >gi|116249573|ref|YP_765411.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254221|emb|CAK03836.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 308 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 25/286 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + VF VA + SF AAE+L LS S++S+ I +E +G+ L R R ++LT Sbjct: 1 MAIDLKLVSVFLAVAEAKSFRGAAERLGLSHSAVSQAIRRMEDRMGVALIQRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119 E G +L+ ++E + Q+ +P+G LR+A + + + + G L F Y Sbjct: 61 EAGMRLYERVGPAVAEVELALDDAQDRGSQPTGLLRLAVS-SIAERFISGPLLASFTHAY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173 P +Q+ + + +++ DI + D +RL + I+ + QR+LV AAP Y Sbjct: 120 PGVQVDVNVTDEEFDIVAEGYDAGVRLGEVIEQDMIAVPVSGNQRQLVV------AAPSY 173 Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230 L+ P + EL +H I + D+ P E D + PRI+ N Sbjct: 174 LERFGRPANPSELSRHCCIGWRPAPDVAPYRWEFEENGREFDVAV-NPRITT---NDMGV 229 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +++ G G+ + + D LV +MED + P F +F Y Sbjct: 230 MVRTACAGGGVTFGMEETFRPYLDRGELVSLMEDYL-PPFPGFFLY 274 >gi|300950381|ref|ZP_07164307.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300450282|gb|EFK13902.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] Length = 309 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 127/274 (46%), Gaps = 11/274 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVPL 241 Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPE 275 +V + N R +++ P + VY Y E Sbjct: 242 MLVINEIN--RGELEILLPRYQSDPRPVYALYTE 273 >gi|300693175|ref|YP_003749148.1| transcriptional regulators, lysr family [Ralstonia solanacearum PSI07] gi|299075212|emb|CBJ34499.1| putative transcriptional regulators, LysR family [Ralstonia solanacearum PSI07] Length = 301 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 10/249 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A +F AA L +S S++S + LE +G++L R R + LTE G +L Sbjct: 8 ELTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVALTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R LE E+ +PSG +RI+ + + + L++ L +FL YPDI ++ Sbjct: 68 LRRVRPAVADLEDAVNEVASERNRPSGSIRISASENAARPLVRHVLPDFLAAYPDIHVEC 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D + +DI D D IRL + + + R + A A+P YL P +L Sbjct: 128 VVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFVAVASPAYLSRHAPPERPHDL 187 Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H I F G L +E A+V+ + P L + + +++ + G GIA Sbjct: 188 TQHRCIRFRFESGALYRWDLERRGTAASVN--VDGP----LTLGNLNLMVEAALAGIGIA 241 Query: 243 LLPDYIVKD 251 +P+ +V + Sbjct: 242 WVPENLVAE 250 >gi|206563608|ref|YP_002234371.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198039648|emb|CAR55617.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 300 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 19/306 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D D +R+F V GSFT A+ +L + S +SR++ LE ++G++L YR R +++TE Sbjct: 1 MDLDSIRIFLRVVERGSFTAASVELDMPLSRVSRKVKHLEDDLGVQLLYRTTRRVSVTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + L +++ P G LR+ +G L+ L EF YP + Sbjct: 61 GRDYYDRCLRAEDILLDADRQVRTLRTDPEGTLRVLVPYAIGLFQLEPALAEFRRRYPLV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI DN +D+ D A+R + S + R L H A+P YL P + Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRA-GLLNDSGYVARSLGWSHAKLAASPAYLDRTGRPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238 +L +H+++ G P L+ D GE P L N +++++ G Sbjct: 180 PDDLAQHDILFVGRDAPGLTLR---LSNTD---GERADVPVQPVLISNESVTVLRQATSG 233 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFL 292 GIAL+ + L R +++ P + ++ YP K++AF F+ Sbjct: 234 GGIALISTHFTAR--RLARNELEIVLPDWHRTNDVELHALYPRRATLDSKVRAFVEFLTE 291 Query: 293 KARDWK 298 W+ Sbjct: 292 LFATWR 297 >gi|300698309|ref|YP_003748970.1| HTH-type transcriptional activator aaeR [Ralstonia solanacearum CFBP2957] gi|299075033|emb|CBJ54603.1| Putative HTH-type transcriptional activator aaeR [Ralstonia solanacearum CFBP2957] Length = 298 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 40/307 (13%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V G+F AA +L L+ SSIS+ + LE E+G+ L +R R L+LTE G Sbjct: 6 RMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTEAGRVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V H Q ++ E +P+G+LRI +L L L++F+ +P + ++ Sbjct: 66 YEECANVVHAAARGQQKVAELRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAVRF 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ D A+R+ + ++ SSL+ R++ AAP Y+ P + Sbjct: 126 ELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPDYVGRTGLPTT---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----------LQVNSYLSIMQYCV 236 P+ + D +WL + P+GEP L+V+ L+ Q Sbjct: 181 ------------PQALADLDWL--IFTPLGEPAFVHLRNAQGHEVRLRVHGRLATNQAQT 226 Query: 237 L------GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 L G G+A LL I + LV ++ D F VY P ++ LK R Sbjct: 227 LKALALDGHGVARLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPR--RDAQPLKVTR 284 Query: 288 NFIFLKA 294 L+A Sbjct: 285 CIEHLRA 291 >gi|187920194|ref|YP_001889225.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718632|gb|ACD19855.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 306 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 136/289 (47%), Gaps = 17/289 (5%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 VA +G F+ AA++L ++ SS++R + LE +G L R R ++LT+ G +V Sbjct: 13 VADAGGFSKAAQRLGVATSSVTRLMDSLEASLGTALLTRTPRKVSLTDAGIAYVEQVGKV 72 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 L + +S P G LRI+ + L +L FL P + + +++ + Sbjct: 73 LDDLAEADESVFDSGASPVGSLRISVPSTYSRLRLAPHLAAFLAANPRLFLDVVVADHFA 132 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL-- 191 D+++D D AIR+ +P + ++LI RKL + A+ YL+ C P + Q LD H Sbjct: 133 DLALDRIDIAIRIGRPDRDANLIVRKLADNPRYVVASHAYLERCGTPQNPQALDSHECLR 192 Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPDYI 248 + +G W T R E R+ L NS + + + G GIALLP+++ Sbjct: 193 VAYGG---GYRSRQVW--TFRRDGAEERVEVRGHLLSNSLDMLYEAVLAGQGIALLPEWL 247 Query: 249 VKDNPNLVRIM---ED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 V R+M E+ V +P VY Y +++ K++A F+ Sbjct: 248 VSAEIRSGRLMHLFENFVASPHPGDAIVYAAYLPNRRHSSKVRALVQFL 296 >gi|83721094|ref|YP_440946.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83654919|gb|ABC38982.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 304 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 125/286 (43%), Gaps = 10/286 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF A +GSF A L LS + + + LET G++L R R +LTE G Sbjct: 6 SMAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V + + P G LRI I G + L L ++ YP++QI L Sbjct: 66 YERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D IR+ P+ S LI R L + A+P YL P +L Sbjct: 126 TLSDRIVDVVDEGYDAVIRI-APLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADL 184 Query: 187 DKHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 H + F P +E F + R+ S L VN+ ++ + G GI L Sbjct: 185 AAHECLGFSYSGQPAALEWPFESAQGQQHSV---RVRSRLAVNNGAALRMAALDGLGIIL 241 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V+D+ LVR++ P+ ++ Y + T KL++F Sbjct: 242 QPAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSF 287 >gi|254236094|ref|ZP_04929417.1| hypothetical protein PACG_02053 [Pseudomonas aeruginosa C3719] gi|296388374|ref|ZP_06877849.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|126168025|gb|EAZ53536.1| hypothetical protein PACG_02053 [Pseudomonas aeruginosa C3719] Length = 303 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 21/254 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V SG F+ AA + ++ S++S+ I+ LE +G +L R R L LT +G Sbjct: 11 ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + LE + E++ P G+LR+ + G + L + EFL +P++ + + Sbjct: 71 YERGVRILADLEEAERCASENAA-PRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ +DI D A+R P++SSSL+ RKL + M AP YL P + Q L Sbjct: 130 VLTDEVVDILEQRTDVAVRA-GPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS----IMQYCVLG 238 HN + N++ T R GE + L N+ S + + V G Sbjct: 189 LGHNRL-----------GANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAG 237 Query: 239 SGIALLPDYIVKDN 252 G+A L + V+++ Sbjct: 238 LGLARLAAFQVRED 251 >gi|73538167|ref|YP_298534.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72121504|gb|AAZ63690.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 313 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 135/287 (47%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSF AA+ L L +++++R I LET +G+KL +R R +++T G+ + Sbjct: 7 MQAFTRVVDMGSFARAADSLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTSDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + L + P G L + TT L + L +L +F YP++++ L Sbjct: 67 ERCVRILADVEEAEQSLTRHNNSPKGTLSVDTTAGLARIALIPHLHDFFAAYPELKLDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ K ID+ + D +R+ S++ R++ + + +A+P YL P + +L Sbjct: 127 INGKPIDLLQEGVDVVLRVGA--VDESMVARRIGQLKLAFFASPIYLNRFGTPHELADLA 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + L + ++ W T E + S + N ++ + G G+A L Sbjct: 185 QHKAVNH--LSNRTGREWPWQFTRGNESTEILLPSAISTNDGDVYLECTLAGHGLACLSR 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + LV +M D + + YP+ + K++ F N++ Sbjct: 243 VMAEPYVASGRLVEVMSDWQSEELPISAMYPQNRHLSAKVRVFVNWV 289 >gi|170702069|ref|ZP_02892984.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133028|gb|EDT01441.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 310 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 3/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 13 IELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E P+G LRI+ G + L F YPD+ ++ Sbjct: 73 EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P SSL+ RKL + A P YLK P ++ +L Sbjct: 133 LSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLKRAGVPRAVDDLH 191 Query: 188 KHNLITFGDLIPKCMEDFNWL 208 H I F +P WL Sbjct: 192 AHECIQF--ELPSSGRPIPWL 210 >gi|50121159|ref|YP_050326.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49611685|emb|CAG75134.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 298 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 120/270 (44%), Gaps = 6/270 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 + F VAR SFT AA QL +SQS++S I LE +GI+L R R +++TE G +L Sbjct: 10 QAFIAVAREQSFTKAAAQLGVSQSALSYTIRTLEAHLGIRLLTRSTRSVSVTEAGERLLS 69 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ++E L KP+G +RI + + LL L LL YPDI I++I Sbjct: 70 RIGPHFDQIEDEIAALSGMREKPAGTVRITSVEHAAETLLWPKLAPMLLKYPDINIEIIS 129 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + DI + D +RL + + + +P YLK P+ +L Sbjct: 130 EYGLKDIVAERYDAGVRLGEQVDKDMISLPLAENFSFAVVGSPSYLKRKAVPVIPSDLSH 189 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPDY 247 H+ I +P + W + + R+ + +S+M+ L S G+A LP Sbjct: 190 HSCIKL--RLPTLGSIYTWEFYKEGNEIKVRVDGQGTFATISMMRQAALDSLGLAYLPKD 247 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274 V N LV+++ D P + YP Sbjct: 248 TVDAELKNGKLVQVLADWCPPRPAYHLYYP 277 >gi|254476489|ref|ZP_05089875.1| transcriptional regulator, LysR family [Ruegeria sp. R11] gi|214030732|gb|EEB71567.1| transcriptional regulator, LysR family [Ruegeria sp. R11] Length = 304 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 31/305 (10%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D D LR+F A + T A L L+ + S +++ LE E+G +L +R R ++++++ Sbjct: 1 MDTDSLRLFVAAAERLNITAAGRDLGLAPAMASNRLAKLERELGTELLHRTTRKISISQE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ EV ++E + + +++PSG LR A Q + L F +YPDI Sbjct: 61 GAAFLPYAREVLAQVEAGRAAVGAGALRPSGVLRFAAPSSFAQLHIIPLLPNFQTIYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L + D+ D A+R P++ SSL+ RKL A+P YL++ P++ Sbjct: 121 TIDLRLSDTRQDVIEGSFDLALR-SAPLEDSSLMGRKLADDTRILCASPAYLEHSGRPMT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-----------GEPRISCL-----QVN 226 +L+ H +++ P+ + + V P R++ L VN Sbjct: 180 PDDLEAHRFLSWSSTTPRQIIHADGQTAVLDPTKMMCRTILDDGTSQRLATLAGMGISVN 239 Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 S S+ Q G + +LPD+ + D L + YP++ T K++ F Sbjct: 240 SLWSVAQDIEAGRLVRVLPDWRLHDQSVL--------------WLIYPKSNVLTPKVRCF 285 Query: 287 RNFIF 291 +F+ Sbjct: 286 MDFLI 290 >gi|170728840|ref|YP_001762866.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814187|gb|ACA88771.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 309 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 12/252 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +++++F V GSFT AA+ + L+++++SR+++ LE + G++L +R R L LT+ Sbjct: 1 MDLNRVQMFAQVVEQGSFTAAAKVMGLTKATVSRKVAELEADAGVQLLFRTTRALKLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + L++ + +L + G L I I+LGQ L +FL YPDI Sbjct: 61 GNAYYNRVHRILADLQSAEDQLSSNQQMVKGNLNIVCPIELGQLFLGRVFAQFLTHYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L N+++D+ + D ++ + SL +++ A+P YL P Sbjct: 121 TIDAELTNRNVDVVAEGVDVLFQITS-MSDPSLQTYEMINTDKMLMASPSYLARNGTPKV 179 Query: 183 IQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L KH I T D + W+ EP + L VN+ + + G Sbjct: 180 PQDLSKHKAIKLKSTHIDGSWTLFDGKEWVTQ------EPE-AQLTVNNVTLAREAAIEG 232 Query: 239 SGIALLPDYIVK 250 GI ++P I + Sbjct: 233 LGITIVPTLIAQ 244 >gi|300690632|ref|YP_003751627.1| HTH-type transcriptional activator aaeR [Ralstonia solanacearum PSI07] gi|299077692|emb|CBJ50328.1| putative HTH-type transcriptional activator aaeR [Ralstonia solanacearum PSI07] Length = 305 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 143/307 (46%), Gaps = 33/307 (10%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ +F V +GSFT AAE L + +S+ S +S LE +G++L R R L LTE Sbjct: 1 MEWNDWEIFCRVVEAGSFTAAAEVLGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + ++ +L + +S SG LRIA ++G L + + L +P++ Sbjct: 61 GSHFYDDIAPLFERLREVHADTAAASETVSGTLRIAAPYEVGAQHLTEPVCQTLARFPNL 120 Query: 123 QIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 QIQ+ + + D ++ Y + + + + SSL+ R++V I YAAP L R PL Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVLIPRGLYAAPSLLAE-RAPL 179 Query: 182 SI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---------NSYLSI 231 ++ +L ++ D D +W V RP GEP +V N+ + + Sbjct: 180 AMPADLAGWPCLSGPD-------DASW---VFRPAGEPTAEPFEVPIQPRLQTLNAEMRV 229 Query: 232 MQYCVLGSGIA----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + V G G+A L+ D V LVR++ D VY AL KL + Sbjct: 230 -RAAVRGLGVARMARLVGDAEVATG-RLVRVLPDYEPTPLRVY-----ALMPARKLVPRK 282 Query: 288 NFIFLKA 294 +FL A Sbjct: 283 VRVFLDA 289 >gi|261344816|ref|ZP_05972460.1| transcriptional regulator, LysR family [Providencia rustigianii DSM 4541] gi|282567263|gb|EFB72798.1| transcriptional regulator, LysR family [Providencia rustigianii DSM 4541] Length = 297 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 141/310 (45%), Gaps = 27/310 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++ F V SGSFT AAE L LS+S +S I LE + + L R+ R + LT Sbjct: 1 MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEQRLNVSLLTRNTRNIALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + ++E + Q + +G LR ++T + GQ + L EF LYP Sbjct: 61 EVGKHFYDDFKRIQLQIEEAFEKSQNLGLNITGTLRFSSTNEFGQRYILPLLPEFCRLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + +Q ++ D+ + D AIRL ++SSSL RKL +H A P + + Sbjct: 121 KLHLQYTFNSSLDDLISEKLDIAIRLGN-LKSSSLKVRKLGEYAIHLVATPQFAR----- 174 Query: 181 LSIQELDKHNLITFGDL--IPKCMED-FNWLAT---VDRPIGE----PRI-SCLQVNSYL 229 ++ ++ DL IP NW T + GE P I S NS Sbjct: 175 -------QYPIVQISDLAEIPWITHSLLNWQDTEYFLQNNSGEKFELPLINSQYSSNSAE 227 Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I Q + G+A+ PD++V+++ L+R++ + P + YP K +AF Sbjct: 228 VIHQMALASLGVAICPDWLVEEDIKHNRLIRLLPEFSLPKRNIQLLYPNTSNLPAKTRAF 287 Query: 287 RNFIFLKARD 296 F+ K ++ Sbjct: 288 IEFLVGKLKE 297 >gi|218680868|ref|ZP_03528765.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT 894] Length = 222 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 1/189 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V +GS + AA +L LS+S +S +++ LE +G L +R R LTLTE G+ Sbjct: 5 EGIAAFVAVVEAGSISEAARRLRLSKSVVSERLAELEKSLGGILLHRTTRKLTLTEDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + H+++ ++ E SG +RIA + G+ L L FL +PDI++ Sbjct: 65 FLERATRIVHEIDEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPDIELT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D++ +D + D D IR PI S L+ KL A+P YL P S+ + Sbjct: 125 LDIDDRRVDAASDGYDAVIR-NGPIADSRLVAWKLTRSRRLLCASPDYLAREGTPSSLTD 183 Query: 186 LDKHNLITF 194 L+ H I + Sbjct: 184 LNGHRGIFY 192 >gi|167839524|ref|ZP_02466208.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 305 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 137/297 (46%), Gaps = 12/297 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V ++GSFT AA L + ++++SR++ LE ++G++L +R R L LT Sbjct: 1 MAADPNDTLIFVRVVQTGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + +L+ + + P G LR+ G + L F YP Sbjct: 61 EAGGLYYAHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPHSFGATWIAPLLAGFRRAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D++++++ + +D+ D D A+RL + S L+ R+L + YA+P YLK P Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRL-GVLPDSDLVARRLGSFATGVYASPSYLKRHGAP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCV- 236 EL H +T + + W + +P G R L V S +++ + Sbjct: 180 EHPGELRAHRALTLHQA--RRAAGYAW--PLRKPGGRARYFALDPVIVASDPALIHDALC 235 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G++L + + + L R++ D P+ +P K++AF +++ Sbjct: 236 AGEGLSLAMHHSMASDVEGGRLRRVLRDWSGPAQDFNALFPRGRVALPKVRAFVDYL 292 >gi|163759793|ref|ZP_02166877.1| transcription regulator, LysR family, putative [Hoeflea phototrophica DFL-43] gi|162282751|gb|EDQ33038.1| transcription regulator, LysR family, putative [Hoeflea phototrophica DFL-43] Length = 301 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 3/248 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +RVF VA SF AA L+++ +S++R ++ LE ++ +L R R + LT G Sbjct: 3 DIKPIRVFLKVAELKSFAAAARNLNMTPASVTRIVARLENDLDTQLLKRTTRQVALTSAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +++ + + + + E+ ++ G+L I + LG LL + F L YP++ Sbjct: 63 ARVAARFAPIVEQFDQIAGEVARAARPDHGRLAINAPMSLGLRLLPDLIDSFRLAYPNVT 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + L + +DI + D AIR+ P S I RK+ + HA AAP P + Sbjct: 123 LNVQLTDTLVDIVEENCDLAIRISGPPTDKSTIWRKICEVPRHAIAAPGLFDRIDRPQTP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L + +++ + F A + R I P + L NS + G GIA+ Sbjct: 183 DDLKREFCMSYSANGGSEIWRFR-KAQITRNI--PAGTELVSNSGDFLYSLVKSGDGIAV 239 Query: 244 LPDYIVKD 251 LPD+I KD Sbjct: 240 LPDFIFKD 247 >gi|126640207|ref|YP_001083191.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|169797694|ref|YP_001715487.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|184156448|ref|YP_001844787.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|213155512|ref|YP_002317557.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|215485048|ref|YP_002327289.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|239503093|ref|ZP_04662403.1| LysR substrate binding domain protein [Acinetobacter baumannii AB900] gi|260557637|ref|ZP_05829851.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|301347770|ref|ZP_07228511.1| LysR substrate binding domain protein [Acinetobacter baumannii AB056] gi|301511241|ref|ZP_07236478.1| LysR substrate binding domain protein [Acinetobacter baumannii AB058] gi|301597251|ref|ZP_07242259.1| LysR substrate binding domain protein [Acinetobacter baumannii AB059] gi|332853584|ref|ZP_08434836.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332869299|ref|ZP_08438697.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|332875580|ref|ZP_08443392.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|126386091|gb|ABO10589.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii ATCC 17978] gi|169150621|emb|CAM88530.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|183208042|gb|ACC55440.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|213054672|gb|ACJ39574.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213987700|gb|ACJ57999.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|260408810|gb|EEX02114.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|322506314|gb|ADX01768.1| transcriptional regulator [Acinetobacter baumannii 1656-2] gi|332728548|gb|EGJ59921.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332732807|gb|EGJ64022.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|332736153|gb|EGJ67168.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 293 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 34/310 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L+ F V+AR+ + T+AA + + S+++R+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E +++++ G++RI T G L L EF + Y Sbjct: 61 LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD + + +P +I R L + Y + +YL Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQNYLAQNPP 174 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228 +++L +H + + +D + P + CL+ +S Sbjct: 175 IRRLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L+ G+G+A+LP ++ D P L ++E + + T + L++ ++K + Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278 Query: 289 FIFLKARDWK 298 ++ +A ++ Sbjct: 279 YLRKQADKYQ 288 >gi|126726258|ref|ZP_01742100.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150] gi|126705462|gb|EBA04553.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150] Length = 300 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V GSF+ + + S++S+QIS LE VG +L +R G+T+++ G++ Sbjct: 8 QMLLFVKVVDLGSFSAVSRSSGQTPSAVSKQISQLEDHVGRRLLHRTRTGVTVSDDGAEF 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + K + + +P+G LRIA+++ G+ L L FL YP I + L Sbjct: 68 YIKCCALAEKYQDAADHIANFDPEPNGLLRIASSVAFGKFQLIVALPNFLAQYPKITVSL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +DI + D AI + + + ++I RK++ A+P ++ P S Q+L Sbjct: 128 ELTDRHVDIEEEQFDVAINFAEQLTNPNMIARKIMRNERVLCASPDFIAAHGVPTSFQDL 187 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245 ++ N + +++ + W A ++ S V NS ++ + + G GIA L Sbjct: 188 ERFNCLRTSNMVGRNA----WTAELNGKTHTVDASGNFVGNSADAVYKAALAGLGIARLS 243 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 YIV D LVR+ + + V + E + K++ F F+ Sbjct: 244 TYIVADKFETGELVRLFPEYVQKGADVAVIFAEKRNLSPKIRLFVEFM 291 >gi|83647551|ref|YP_435986.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83635594|gb|ABC31561.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 304 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 10/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F GSF AA+ L LS+ ++R +SGLE +G KL +R R L+LTE G + Sbjct: 7 MRAFVATVDHGSFAKAADILDLSRPVLTRLVSGLEDSLGAKLLHRTTRRLSLTESGERFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V+ L+ + +L + + P G LR++ + L+ + EF+ YP I++ + Sbjct: 67 EACRNVFSLLDEAESDLSQQTQCPKGVLRLSAPMAFSLLHLEPVIAEFMSTYPSIEVDME 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D +IR+ ++ LI R++ + A+P YLK P S +L Sbjct: 127 LADRRVDLVEEAFDLSIRIAHELE-PGLIARRIGGTALVTCASPEYLKLNGLPESPDDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 H + F +W + + + + N+ + + + G GI LP Sbjct: 186 THECMGFS-----LARRNSWSFLENDKVRYVDVRGRFKSNNGIFLAKLAESGKGIVQLPC 240 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +IV + LV +++D P+ +Y Y K++ F +F+ Sbjct: 241 FIVNEALREKRLVTVLKDYQPPNLDIYCVYQSREYLPQKVRLFIDFM 287 >gi|54309487|ref|YP_130507.1| LysR family transcriptional regulator [Photobacterium profundum SS9] gi|46913923|emb|CAG20705.1| hypothetical transcriptional regulator protein, LysR family [Photobacterium profundum SS9] Length = 311 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 142/303 (46%), Gaps = 33/303 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F+ + +GS A+E L +S+ISR+I LE E+ I LF+R R L LTE GSK Sbjct: 4 EDLKLFHQIVDTGSLNRASEIFDLPKSNISRRIKSLEEELNILLFHRQNRALQLTEAGSK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120 + T + LE + E+ + + SG LRI +D+G+ + F+ +YP Sbjct: 64 FYTKTKAMLIDLEASIQEITAPTYEVSGHLRIQLLPFPEILDIGKMIFT-----FMDMYP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK--PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 I +++I +D ++ ++ D A+R+ + ++ SSL+ R + P Y+K Sbjct: 119 KISVEIITSAEDKNMVENHIDIALRVGEGNTLEDSSLVARPFKHASFGFFCTPEYVKQHG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQY 234 P + +L + N+I F P N + P G+ L +NS M+ Sbjct: 179 RPQTADDLRQLNVIRFR--FP------NGQIYGNLPFGKDETVEVSGNLVMNSVPLCMEA 230 Query: 235 CVLGSGIALLPD-----YIVKDNPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRN 288 C+ GI +P+ Y+ +D L+R+ D I PS + YP T + F Sbjct: 231 CLQNRGIVFIPEDIGNYYLERD--MLIRLF-DHIEPSIKYGWLVYPSRKNLTLAARTFVE 287 Query: 289 FIF 291 FI Sbjct: 288 FIL 290 >gi|293611202|ref|ZP_06693500.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826453|gb|EFF84820.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 293 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 34/310 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L F V+AR+ + T+AA + + S+++R+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E +++++ G++RI T G L L EF + Y Sbjct: 61 LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD + + +P +I R L + Y + +YL Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSKNYLAQNPP 174 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228 ++++L +H + + +D + P + CL+ +S Sbjct: 175 IRALEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L+ G+G+A+LP ++ D P L ++E + + T + L++ ++K + Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278 Query: 289 FIFLKARDWK 298 ++ +A ++ Sbjct: 279 YLRKQADKYQ 288 >gi|254000061|ref|YP_003052124.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986740|gb|ACT51597.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4] Length = 307 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 7/179 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A GSF+ AA +L ++ +S+ + LE ++G++LF R R LTLTE G + Sbjct: 10 FVRSAELGSFSAAARRLSMTAGGVSKNVGKLEADMGVRLFQRSTRKLTLTEAGEQF---L 66 Query: 71 SEVYHKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V L+T Q + +S KP+G L++ + G++ + L EFL LYPDI+ Sbjct: 67 QQVAGGLDTIQAAIANTSNAGGKPAGTLKVGMAMAFGRDQILPLLGEFLRLYPDIKPDWR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 DN+ +D+ + D AI I S ++ R+L +H+ A+P YLKN P + ++L Sbjct: 127 FDNRQVDLIAEGFDVAIGGGIQI-SPGIVMRQLAKVHLILVASPGYLKNKILPKTPEDL 184 >gi|222086891|ref|YP_002545425.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724339|gb|ACM27495.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 303 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 17/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +RVF V SFT AAE L +S+++ + LE +G++L R R ++ T G Sbjct: 4 FDAMRVFSRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +E + + KP G LR+ L ++ + NL FL YP+I++ Sbjct: 64 AYYQRCLRILSDIEDAEGAF--AGAKPKGLLRVDVHGTLARHFVLPNLPSFLETYPEIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R+ P Q S +I R++ + AAP Y++ P + Sbjct: 122 YMSEGDRFVDLIREGIDCVLRVGTP-QDSDMIARRVAMLEEITLAAPAYIERFGMPTHPE 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 LD H ++ F G L+P + + P + + VN+ S LG Sbjct: 181 ALDGHRMVGFRSSATGGLLPLEFTVDGAIRNITLP------ATVSVNAAESYFSAAKLGL 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +P Y ++ + LV +++D V YP + + +++ F +++ Sbjct: 235 GLIQVPRYHAEEALKSGELVHVLKDFPPTRTPVSMLYPRNRQLSPRVRVFIDWL 288 >gi|115351667|ref|YP_773506.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281655|gb|ABI87172.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 310 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 3/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 13 IELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E P+G LRI+ G + L F YPD+ ++ Sbjct: 73 EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P SSL+ RKL + A P YLK P ++ +L Sbjct: 133 LSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLKRAGVPRAVDDLH 191 Query: 188 KHNLITFGDLIPKCMEDFNWL 208 H I F +P WL Sbjct: 192 AHECIQFE--LPSSGRPIPWL 210 >gi|262368411|ref|ZP_06061740.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262316089|gb|EEY97127.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 310 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F + GS+THAA+ L LS+S+I + I LE ++ ++L R R L+LT++G L Sbjct: 9 ISAFVASVKYGSYTHAAKHLGLSRSAIGKSIVRLEEQMEVRLLNRTTRSLSLTDEGRILF 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ LE + ++P G L++ LG + L FL +P ++ + Sbjct: 69 DYCQQILEGLEEVDHVMASRRLEPIGTLKVTAPHSLGHRYILPILDTFLKKWPGLKADIS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI + D IR+ +P S L+ R + M A+P Y+K P + ++L Sbjct: 129 FTDRFVDIIEEGFDIGIRVGEPKDDSRLLTRTIAWQKMQTCASPQYIKLYGSPQTPEDLA 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIAL 243 K + I + NW D I G + ++++S +I+ V G GI Sbjct: 189 KFDTI----FLNGSNNRRNWKFKTDSGIYVFEGPEK---MKIDSSDAILASAVSGFGIIQ 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP YI + D L+ ++E + YP + +++ F +++ Sbjct: 242 LPTYITEESIDQLQLIPLLEKYTVEPEPIRIIYPSKKHLSPRIRMFIDYL 291 >gi|291613636|ref|YP_003523793.1| LysR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291583748|gb|ADE11406.1| transcriptional regulator, LysR family [Sideroxydans lithotrophicus ES-1] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 135/296 (45%), Gaps = 14/296 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR SF AAE+LH++ +++S+QI LE +G+ LF R + L L E Sbjct: 9 NALRFFEAAARHRSFIRAAEELHVTPAAVSQQIKLLEDHLGVALFNR-GKTLVLNESAHD 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S+ + +LE + ++ S+ +G L I+T L L +F L YPD+++ Sbjct: 68 ALHLVSDAFDQLERAMLRVRSGSI--AGPLTISTPPVFAARWLIPRLNDFYLRYPDVEVH 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ + +D SM+ D AIR ++R L+ + A A P + + P + Sbjct: 126 LLATRRIVDFSMEEVDMAIRFSSDPHPGLSVER-LMPEWIVAVATPELAASIKTPADLLH 184 Query: 186 LD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 D + + P+ L VD P+ R ++ L+I Q V G G+ L Sbjct: 185 ADLIEDDWHIMRGTFPEWKTWLAGLGVVDAPLNVRRFG----DADLAI-QAAVNGLGVTL 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +V+++ LV+I+ I + P K+ AFR ++F +A D Sbjct: 240 AWHSLVQNDLGSGRLVQILGHNIASDLSYQLVMPRNKSMLNKVAAFRAWLFEQAAD 295 >gi|226943200|ref|YP_002798273.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226718127|gb|ACO77298.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 296 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 8/294 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F +AR+ T AA +L + ++++R++ LE +G LF R + G TE Sbjct: 1 MDWDNLRFFLELARAKKLTVAARRLGVDHTTVARRVQALEKSLGQPLFIRGSSGYGPTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + + +++ + SG +RI T G LL G L YP + Sbjct: 61 GRRLLVQVEAMESAYRAIEQDDPDTADQLSGLVRIGATEGYGIELLAGQLAALTRRYPHL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+ + + +S AD I L +P + +I R L + YA+ YL S Sbjct: 121 GVDLLAVPRMVRLSRHEADIVITLERPERGPYIITR-LTDYVLRLYASADYLAAQPPIRS 179 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H +++ DL+ ++ ++L IG PR L+ S L+ + G+GI Sbjct: 180 RDDLRQHGFVSYIEDLL--YSKELHYLDD----IGRPRQVALRSTSILAQQKAAAAGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 A+LP + + +P LV ++ D + + T + P K+ +++ +F+ AR Sbjct: 234 AILPSFAARKDPALVEVLADQVEFTRTFWMLMPVESKDLARMRVTWDFLREMAR 287 >gi|197337234|ref|YP_002158790.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197314486|gb|ACH63935.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 320 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 1/181 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSFT AA + S++S+QI LE E+G++L R R +LT G + Sbjct: 5 NQLSLFIDVVQQGSFTKAAALHDMDNSALSKQIKKLEAELGVQLLNRSTRTFSLTPAGEE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ L+ + P G++RI + +GQ LQ + +F+ YPD+++ Sbjct: 65 ILEQAHQLVGSLDNVKSIADSYQAVPKGRIRITAPLHIGQGYLQPVISQFMTTYPDVEVV 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++D+K DI ++ D A RL + + SSLI +K+ I A+ ++K EP + +E Sbjct: 125 LMMDDKRSDIISEHFDVAFRLGR-LDDSSLIAKKVADIRGVILASHSFIKRFGEPSTPEE 183 Query: 186 L 186 L Sbjct: 184 L 184 >gi|190895386|ref|YP_001985678.1| transcriptional regulator LysR family [Rhizobium etli CIAT 652] gi|190699331|gb|ACE93415.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LRVF VA SFT AA++L +S + S+ + LE +G +L R +R ++LTE G Sbjct: 6 SLRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLENRLGTRLLNRTSRHVSLTETGRLY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 T E+ +L+ + + +V P G L+++ + L + YPD+ + L Sbjct: 66 FNQTREMLERLDEVEDAIGNVTVAPRGTLKLSAPVWAATGYFTDMLAAYNRRYPDVCLDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +++ + D A+R + L+ R L + A+P YL P ++ E Sbjct: 126 DLSGRLVNLVDEGFDLALRATSQDRLDPGLVARPLTNVQFRLMASPDYLARTGRPQNVAE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL-GSGIA 242 L+ H L+ + + + +++ P G +I+ + ++ +IM L G G+A Sbjct: 186 LNGHALLRYSGV------NLGESMSLEGPDGPHKITFRTVMLSDNETIMHLAALRGMGVA 239 Query: 243 LLPDYIVKDNPNLVR--IMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP ++ + + R I+ IT F T+Y YP + K++ F +F+ R+ Sbjct: 240 FLPAWMAEQDLEAGRLEIVLPAITLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297 >gi|16129289|ref|NP_415844.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|89108176|ref|AP_001956.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157160839|ref|YP_001458157.1| LysR family transcriptional regulator [Escherichia coli HS] gi|170081007|ref|YP_001730327.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|193062709|ref|ZP_03043803.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|194426053|ref|ZP_03058609.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|238900563|ref|YP_002926359.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253773669|ref|YP_003036500.1| LysR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161408|ref|YP_003044516.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|256022957|ref|ZP_05436822.1| predicted DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|260843677|ref|YP_003221455.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O103:H2 str. 12009] gi|297517004|ref|ZP_06935390.1| LysR family transcriptional regulator [Escherichia coli OP50] gi|300927844|ref|ZP_07143406.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|300948415|ref|ZP_07162518.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300954582|ref|ZP_07167028.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|301022702|ref|ZP_07186552.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|301647169|ref|ZP_07246990.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|307137971|ref|ZP_07497327.1| LysR family transcriptional regulator [Escherichia coli H736] gi|331641895|ref|ZP_08343030.1| putative transcriptional regulator LYSR-type [Escherichia coli H736] gi|2495399|sp|P77333|YCJZ_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator ycjZ gi|1742185|dbj|BAA14921.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|1787589|gb|AAC74410.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|157066519|gb|ABV05774.1| transcriptional regulator, LysR family [Escherichia coli HS] gi|169888842|gb|ACB02549.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|192931831|gb|EDV84431.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|194416108|gb|EDX32374.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|238862305|gb|ACR64303.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242377106|emb|CAQ31833.1| putative transcriptional regulator LysR-type [Escherichia coli BL21(DE3)] gi|253324713|gb|ACT29315.1| transcriptional regulator, LysR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973309|gb|ACT38980.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977523|gb|ACT43193.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|257758824|dbj|BAI30321.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O103:H2 str. 12009] gi|260449539|gb|ACX39961.1| transcriptional regulator, LysR family [Escherichia coli DH1] gi|299881147|gb|EFI89358.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|300318492|gb|EFJ68276.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|300452090|gb|EFK15710.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300464129|gb|EFK27622.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|301074655|gb|EFK89461.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|315135969|dbj|BAJ43128.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|315619412|gb|EFU99956.1| uncharacterized HTH-type transcriptional regulator ycjZ [Escherichia coli 3431] gi|323162459|gb|EFZ48311.1| hypothetical protein ECE128010_1360 [Escherichia coli E128010] gi|323942276|gb|EGB38447.1| LysR substrate binding domain-containing protein [Escherichia coli E482] gi|323973562|gb|EGB68747.1| LysR substrate binding domain-containing protein [Escherichia coli TA007] gi|331038693|gb|EGI10913.1| putative transcriptional regulator LYSR-type [Escherichia coli H736] gi|332342929|gb|AEE56263.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|114328505|ref|YP_745662.1| LysR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316679|gb|ABI62739.1| transcriptional regulators, LysR family [Granulibacter bethesdensis CGDNIH1] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF+ AA +++SQ ISRQI LE G +L R R L LTE+G L Sbjct: 8 MRVFLRVAELGSFSAAARGINMSQPMISRQIGMLEDHFGTQLVQRSTRHLHLTEEGEALR 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +LE + + + PSG++R+++ G L G + F LYPDI I L Sbjct: 68 EHARRIIDQLEAAEEAIGRGARPPSGRVRLSSPTAFGL-YLSGQMAAFHQLYPDIDIALR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ D D A+ + + +S+I RK+ + AAP Y+ EP S +L Sbjct: 127 LSDETVNLIEDGLDLALYVGG-VPETSMIVRKIGSARRLLVAAPCYMDGRAEPSSPAQLK 185 Query: 188 KHNLITFG 195 + +T+ Sbjct: 186 DFDCLTYA 193 >gi|150397971|ref|YP_001328438.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029486|gb|ABR61603.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 304 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 142/292 (48%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G L R R +LTE G Sbjct: 13 RIRAFIDVVDAEGFSAAARRIGKSKALLSKYVRELEDELGALLLNRTTRQFSLTEAGHTY 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121 +R SE+ +++ ++ S+ G+LRI D+GQ+L+ +F +P+ Sbjct: 73 YRSASEILKEIDNLADLVRASNSDLKGRLRITVPRTFVDADIGQSLI-----DFGKEHPE 127 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++++ D++ +D+ + D AIR+ + ++ S+LI RKL + A+P ++ + Sbjct: 128 LSLEIVSDDRFVDLVEESFDVAIRITR-LEDSTLIARKLDDFQVLVCASPDFISRADPLI 186 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL K I D + + ++ P ++VNS L + V G G+ Sbjct: 187 HPSELSKLPCIL--DTNGRSYSSWRFVEKDGSPFTVSVSGQIEVNSPLGAARAAVTGIGV 244 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LPD+I + + LV + +D + +Y YP K++ F +F+ Sbjct: 245 AVLPDFIARPKIASGELVTLFDDFLPKDRGIYAIYPHRRYLPTKVRTFVDFL 296 >gi|21233096|ref|NP_639013.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770036|ref|YP_244798.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21114950|gb|AAM42937.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575368|gb|AAY50778.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 311 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 25/297 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AA+ L S ++I+RQ++ LE +G +L R R ++LT G+ Sbjct: 5 DAMRVFVAVAERSGFSAAADALDRSTANITRQVAALEQRLGTRLLNRTTRRVSLTSAGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + ++ PSG LR+ + G L L F +P +++ Sbjct: 65 YYQRCLQLLADLDDLEATVGAQALAPSGLLRVNAPVSFGIVQLAALLPGFRARFPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D A+R+ R+P + +LI R+L T+ + AAP YL P Sbjct: 125 LSLSDRLVDMVEEGFDVALRITRQP--APTLIARQLGTVRLVPCAAPAYLARAGTPQHPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRI---SCLQVNSYLSIMQYCV 236 +L H +C+ +++ T D P G+ + L+ N+ + V Sbjct: 183 DLAGH----------ECLL-YHYAPTGDDVRFHGPDGDIDVRLRGGLRANNGHVLSAAAV 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ + PD++ ++ LVRI+ D +Y Y K+++F +++ Sbjct: 232 AGQGVVIQPDFLADEHIAAGRLVRILPDYHLADIGIYAVYTSRSHLAPKVRSFIDYL 288 >gi|264679752|ref|YP_003279661.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210267|gb|ACY34365.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 303 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 14/266 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ ++ +F V GS + AA QL ++ S++S+ I LE + G+ L +R R LTLT+ G Sbjct: 3 DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEHDAGLTLLHRSTRQLTLTDAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + EL +PSG+LR+A Q+ L +L ++P+++ Sbjct: 63 QRFYTQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHAAPA-LGRWLAMHPELR 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCRE 179 ++L++D+ ID+ D A+R +Q SS + R L A+PH++K R Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATVLCASPHWIKAHGSTPRH 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238 P + +L + D DF W ++ L ++++ S + Q+C G Sbjct: 181 PSELAQLPWLEMSRSDD----AQADFLWRQQDTAQEYRLQVRPLMISNHRSAVQQFCEAG 236 Query: 239 SGIALLPDYIVK---DNPNLVRIMED 261 G+ALL + V + +LVR++ D Sbjct: 237 LGLALLSAHDVAASLETGSLVRLLPD 262 >gi|157370514|ref|YP_001478503.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157322278|gb|ABV41375.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 309 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 28/298 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR GSFT AA QL ++ ++S+ I LET +G++LF R +R + L+++G + Sbjct: 8 LPFFEAVARLGSFTQAASQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGHLFY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E +++ PSG LRI L+ +L EF LYP++Q++L Sbjct: 68 QRVAPAMGQIEGAADDVRALHGHPSGLLRITLPQLAASLLVMPHLAEFQALYPEVQLELF 127 Query: 128 LDNKDIDISMDYADCAIRLRK---------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 D+ D+ +D D IR+ PI + QR+++ A P YL Sbjct: 128 TDDHFSDLVLDSFDAGIRMHAMLPKDMIAVPIDNG---QRRMII------ATPGYLAQYG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVL 237 PL+ Q L +HN + + + E W D + S Q+ N I + Sbjct: 179 TPLTPQALYEHNCLRYRFPVSGKFEP--WYFRQDEELLMLEFSGSQIFNEDRLIKDAALA 236 Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI V+ N LV I+ D + P F +YF P + KL+ F +F+ Sbjct: 237 GLGITQRFSGTVQRELNSGQLVEILADYGSDFPGFFIYF--PASRHMPLKLRVFVDFM 292 >gi|110681298|ref|YP_684305.1| LysR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109457414|gb|ABG33619.1| transcriptional regulator, LysR family, putative [Roseobacter denitrificans OCh 114] Length = 304 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 133/286 (46%), Gaps = 10/286 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +SFDW+++R F + GSF+ AA L +Q ++ RQI GLE +G+ L R RGLTLT Sbjct: 6 ISFDWNQVRAFLATVQEGSFSGAARVLKTTQPTVGRQIGGLEKALGVTLVERSVRGLTLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G L + + S SG++ + T L +L LK P Sbjct: 66 EAGRDLLEHMRTMGEAATLISMVADGKSQDVSGEVTVTGTDLLSAAILPRVLKPLRQTAP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++++ ++ +++ AD AIR +P Q LI R L + YAA YL P Sbjct: 126 GIRVRILASSEMQNLTQREADIAIRHVRPDQ-PDLIARHLGDFRANLYAASDYLDRVGRP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--G 238 + +++ + + D + M + + RP ++S ++ + ++ G Sbjct: 185 HTPRDVATLDFVGNAD-PERLMAPLHNMGVPIRP------ESFVMSSANGVVAWELVKAG 237 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G+++ P+ + +P + R++ D + F ++ L+ + +++ Sbjct: 238 YGVSMQPEALGDADPGIERVLPDFPSLEFPMWLVTHRELQTSRRIR 283 >gi|215488798|ref|YP_002331229.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|215266870|emb|CAS11311.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] Length = 323 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL +L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPHLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|126668059|ref|ZP_01739022.1| transcriptional regulator, LysR family protein [Marinobacter sp. ELB17] gi|126627450|gb|EAZ98084.1| transcriptional regulator, LysR family protein [Marinobacter sp. ELB17] Length = 302 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 21/294 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS D D ++ F VAR + ++AA +L L+ S++SR+++ LE +G++L R R L+LT Sbjct: 1 MSSDSD-MQFFACVARRLNLSNAALELGLTASAVSRRLTRLENRLGVRLLNRTTRRLSLT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ +++ T+ L +S +P G LRI T G+ + + F P Sbjct: 60 SDGEVFLLASHDIIGRIKETEQSLSRASAEPQGLLRINATFQFGREYIAPAISRFARTNP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++Q+QL L + ++ + D IR P SS LI +L+ AAP YL+ P Sbjct: 120 EVQVQLELSDAPANMVEEGYDLNIRFGMP-SSSRLIVTRLLPNQRVLVAAPSYLRKHGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCV 236 +++L +H I ++ + E ++ D R G+ L N + + + Sbjct: 179 TRLEDLTQHQCI----ILRQEREAYDIWRFDDGEHVRATGQ-----LSTNDGEIAVSWVL 229 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAF 286 G GI L ++ + + R+ V+ P T +Y YPE L + K++ F Sbjct: 230 EGHGIMLRSEWDIARHVRTGRL--QVVLPEKTHEAGIYAVYPERLNLSAKVRLF 281 >gi|108763780|ref|YP_631354.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108467660|gb|ABF92845.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622] Length = 295 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 18/255 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++ F V +GSF + L++S+ + ++ LE+ +G++L R R L+LT+ G Sbjct: 7 DEIFAFMAVVDAGSFVSGGRAIGLTRSAAGKALARLESRLGVRLLNRTTRHLSLTDDGRV 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H +V L+ + + + + P G LRI G+ + LK++L +PD+Q++ Sbjct: 67 FHEHCQQVLAALDDAEASVGDHTGTPRGVLRITVPDAFGRLHVLPVLKKYLQTWPDVQVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ DI + D A+R+ + L+ R + + AAP YL EP +++E Sbjct: 127 VSFTDRVADIIEEGYDLAVRINVTSTDTRLVSRLVAQHRVFVCAAPSYLAARGEPQTLEE 186 Query: 186 LDKHNLITFGD--------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L H+ + F L PK TV+ G+ R L+++S +I V Sbjct: 187 LATHDCLLFSSRARRQRWRLRPKG----GAYVTVE---GQSR---LRLDSGEAIRDAAVA 236 Query: 238 GSGIALLPDYIVKDN 252 G GIA LP ++V ++ Sbjct: 237 GLGIAFLPSFLVDED 251 >gi|134296861|ref|YP_001120596.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140018|gb|ABO55761.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 324 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V + SFT AA+ L + ++S++ I LE +G++L +R R L+LT +G+ + Sbjct: 7 MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ Q + KPSG LR+ LG+ ++ +L F +PDI + L Sbjct: 67 EHCMKIIAEIAEVDASFQTGNRKPSGVLRVHMPNSLGRRVVLPSLSIFRQRFPDIALDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + DC IR+ P++ SS++ R++ + A+P YL EP I +L Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPQEIADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F W+ +D +P+ + VN + + + G G+ Sbjct: 186 DHHAVNF--RASHGARPIPWVFMIDGKPVEVRMAGTVTVNDSDAYVTSGLEGFGMIQPTL 243 Query: 247 YIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V +D +LV ++ + + YP + K++ F ++I Sbjct: 244 FMVLPHLRDG-SLVEVLPECNPKPKPISIVYPHNRHLSQKVRVFADWI 290 >gi|262043902|ref|ZP_06016990.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330013282|ref|ZP_08307603.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|259038756|gb|EEW39939.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533553|gb|EGF60274.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 302 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 15/304 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF V SG+F AA LH+++S++ + I+ LE +G+ LF R R LT Sbjct: 1 MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + E ++ + LQ + G+LR++ + GQ + L YP Sbjct: 61 EEGEQFYLQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L ++ +++ + D A+R+ + SL R L M AA YL+ P Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237 +I L++H T G L ++ + D GE R S L + + +I Sbjct: 181 QTIAGLNEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQ 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA----LKNTGKLKAFRNFI 290 G GIA LPD++V + L +++ F ++ +PE K + A R + Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDALREGL 295 Query: 291 FLKA 294 L A Sbjct: 296 PLTA 299 >gi|254235539|ref|ZP_04928862.1| transcriptional regulator, puative [Pseudomonas aeruginosa C3719] gi|126167470|gb|EAZ52981.1| transcriptional regulator, puative [Pseudomonas aeruginosa C3719] Length = 301 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF VA +G F AA Q++LS +++S+ ++ LE + ++L R R ++LTE G Sbjct: 7 LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE L PSG LR++ + L L + FL YPD++++L+ Sbjct: 67 QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D A+R + S L+ R L+ + AAP YL +PL + L Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F W DR I P +V+S L++ + G G++L+P Sbjct: 187 EHECIRFS----LSGHADRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ LV ++ D ++ YP + + GK + F +F+ Sbjct: 243 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 288 >gi|330816734|ref|YP_004360439.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327369127|gb|AEA60483.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 295 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 14/268 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW +RVF + R GS + AA L ++ ++ISR+I LE +G KL R G LT G Sbjct: 10 DWQDVRVFLALGRHGSLSAAARALGVNHATISRRIQSLEATLGEKLAERRPEGYVLTPAG 69 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ V S++ ++T + + P G +R+ L Q L L E +L+P + Sbjct: 70 TRALSVASDMETAVQT--LGRGGTDDAPKGIVRVNAPPALSQAFLTRRLAEVPILFPGLD 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L D + I + AD A+R+ KP + I + + ++ Y P + + Sbjct: 128 IDLATDLRSISLERHEADIAVRIDKP-EDGDFIAKPVGSMDFGFYGTPAVCER------V 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + + L+ F D M D +WL + + RI+ + N++++ G G+A+ Sbjct: 181 EGGEAPILVGF-DEANSHMPDASWLG---QHYSQARIA-FRANNHVAQATAACAGVGLAM 235 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYF 271 LP Y+ + P L + PS ++ Sbjct: 236 LPHYVGRQLPELRACALSPVRPSRDIWL 263 >gi|294650182|ref|ZP_06727557.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|292823921|gb|EFF82749.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 310 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F + GS+THAA+ L LS+S+I + I LE ++ ++L R R L+LT++G L Sbjct: 9 ISAFVASVKYGSYTHAAKHLGLSRSAIGKSIVRLEEQMEVRLLNRTTRSLSLTDEGRILF 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ LE + ++P G L++ LG + L FL +P ++ + Sbjct: 69 DYCQQILEGLEEVDHVMASRRLEPIGTLKVTAPHSLGHRYILPILDTFLKKWPGLKADIS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI + D IR+ +P S L+ R + M A+P Y+K P + ++L Sbjct: 129 FTDRFVDIIEEGFDIGIRVGEPKDDSRLLTRTIAWQKMQTCASPQYIKLYGSPQTPEDLA 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIAL 243 K + I + NW D I G + ++++S +I+ V G GI Sbjct: 189 KFDTI----FLNGSNNRRNWKFKTDTGIYVFEGPEK---MKIDSSDAILASAVSGFGIIQ 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP YI + D L+ ++E + YP + +++ F +++ Sbjct: 242 LPTYITEESIDQLQLIPLLEKYTVEPEPIRIIYPSKKHLSPRIRMFIDYL 291 >gi|156933413|ref|YP_001437329.1| hypothetical protein ESA_01231 [Cronobacter sakazakii ATCC BAA-894] gi|156531667|gb|ABU76493.1| hypothetical protein ESA_01231 [Cronobacter sakazakii ATCC BAA-894] Length = 300 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 5/245 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + GS T AA L + S +SR ++ LET +G++L R R L+LT+ G + Sbjct: 11 VEIFVTIIEKGSITAAAVALGTTASVLSRALTRLETRLGVQLVRRTTRQLSLTQAGRHYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + ++Q + G +R++ G L L+ F YP I ++L Sbjct: 71 EQACSAFSVFERAERDIQGRGAQTVGHIRLSAPTTYGHYRLPALLQRFAAHYPGITVELN 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D+ + D AIRL + S L+ RKL + AAP YL+ EP ++ L+ Sbjct: 131 ITNRNVDLVAEGYDLAIRL-GTLPDSRLVARKLEEAPLCLVAAPAYLRQHGEPHTLAALE 189 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245 H + F ++P W L PI +QV + L ++ V G+GI Sbjct: 190 NHRCLPF--IMPSSGRIAQWSLCEEGAPIEWTPKGQIQVSDDILGVISLAVSGAGICQTY 247 Query: 246 DYIVK 250 D+I + Sbjct: 248 DFIAR 252 >gi|15677691|ref|NP_274852.1| LysR family transcriptional regulator [Neisseria meningitidis MC58] gi|7227112|gb|AAF42190.1| transcriptional regulator, LysR family [Neisseria meningitidis MC58] gi|316985464|gb|EFV64411.1| uncharacterized HTH-type transcriptional regulator yafC [Neisseria meningitidis H44/76] gi|325133502|gb|EGC56165.1| putative lysR-family transcriptional regulator [Neisseria meningitidis M13399] gi|325139517|gb|EGC62057.1| putative lysR-family transcriptional regulator [Neisseria meningitidis CU385] gi|325200915|gb|ADY96370.1| putative lysR-family transcriptional regulator [Neisseria meningitidis H44/76] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G L + + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289 >gi|26247664|ref|NP_753704.1| putative transcriptional regulator YcjZ [Escherichia coli CFT073] gi|170681201|ref|YP_001743847.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5] gi|215486626|ref|YP_002329057.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|218689318|ref|YP_002397530.1| putative nucleic acid-binding regulator [Escherichia coli ED1a] gi|218704847|ref|YP_002412366.1| putative nucleic acid-binding regulator [Escherichia coli UMN026] gi|227886235|ref|ZP_04004040.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|293409721|ref|ZP_06653297.1| conserved hypothetical protein [Escherichia coli B354] gi|300897384|ref|ZP_07115811.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300971657|ref|ZP_07171530.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|301017579|ref|ZP_07182253.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|312966740|ref|ZP_07780958.1| uncharacterized HTH-type transcriptional regulator ycjZ [Escherichia coli 2362-75] gi|331646658|ref|ZP_08347761.1| putative transcriptional regulator LYSR-type [Escherichia coli M605] gi|331672856|ref|ZP_08373642.1| putative transcriptional regulator LYSR-type [Escherichia coli TA280] gi|26108066|gb|AAN80266.1|AE016760_125 Hypothetical transcriptional regulator ycjZ [Escherichia coli CFT073] gi|170518919|gb|ACB17097.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5] gi|215264698|emb|CAS09070.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|218426882|emb|CAR07737.2| putative nucleic acid-binding regulator [Escherichia coli ED1a] gi|218431944|emb|CAR12829.1| putative nucleic acid-binding regulator [Escherichia coli UMN026] gi|222033133|emb|CAP75873.1| Uncharacterized HTH-type transcriptional regulator [Escherichia coli LF82] gi|227836439|gb|EEJ46905.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|281178520|dbj|BAI54850.1| putative transcriptional regulator [Escherichia coli SE15] gi|284921202|emb|CBG34268.1| LysR-family transcriptional regulator [Escherichia coli 042] gi|291470189|gb|EFF12673.1| conserved hypothetical protein [Escherichia coli B354] gi|300358868|gb|EFJ74738.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300400073|gb|EFJ83611.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|300411143|gb|EFJ94681.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|307553390|gb|ADN46165.1| transcriptional regulator [Escherichia coli ABU 83972] gi|312288204|gb|EFR16106.1| uncharacterized HTH-type transcriptional regulator ycjZ [Escherichia coli 2362-75] gi|312945965|gb|ADR26792.1| putative nucleic acid-binding regulator [Escherichia coli O83:H1 str. NRG 857C] gi|315295360|gb|EFU54690.1| LysR substrate binding domain protein [Escherichia coli MS 153-1] gi|315297248|gb|EFU56528.1| LysR substrate binding domain protein [Escherichia coli MS 16-3] gi|320195657|gb|EFW70282.1| LysR family transcriptional regulator YcjZ [Escherichia coli WV_060327] gi|323187563|gb|EFZ72872.1| hypothetical protein ECRN5871_4388 [Escherichia coli RN587/1] gi|330911195|gb|EGH39705.1| LysR family transcriptional regulator YcjZ [Escherichia coli AA86] gi|331045410|gb|EGI17537.1| putative transcriptional regulator LYSR-type [Escherichia coli M605] gi|331070077|gb|EGI41446.1| putative transcriptional regulator LYSR-type [Escherichia coli TA280] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|302188623|ref|ZP_07265296.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae 642] Length = 297 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 129/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L +S S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLQVARDQSFTKAATRLGVSPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLTQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W R + NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +PD + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|241205977|ref|YP_002977073.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859867|gb|ACS57534.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 10/247 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +G F+ AAE+LHL++S++ + I+ LE +G++LF R R +LTE+G + Sbjct: 9 IFVEAVEAGGFSAAAERLHLTRSAVGKTIARLEQRLGVRLFNRTTRMQSLTEEGRFFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + L+ G+LRI+ + G++ + L L +P++++ L + Sbjct: 69 CLRAVEEIRLGEAMLESGRRDVRGRLRISMPVLFGRHCIAPTLARLLDEHPNLELDLSFN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D D IR + L+ R + M A+P YL+ EP ++ ++ +H Sbjct: 129 DRIVDLLEDGFDLVIRNGPLKDNPDLMARAIARQRMTVCASPAYLEKHGEPQTVFDIPRH 188 Query: 190 NLITF--GDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLP 245 I + GD +D W+ G + + L+++ SI V G G+A LP Sbjct: 189 EGIVYRRGD------DDKGWIFPTAADPGRRLVPKARLRLDDLASISDAAVAGRGLAWLP 242 Query: 246 DYIVKDN 252 ++V++ Sbjct: 243 CWLVREE 249 >gi|73540594|ref|YP_295114.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118007|gb|AAZ60270.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 128/294 (43%), Gaps = 14/294 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F R GSFT AA +LHL+QS+ISRQ++ LE+ +G KLF R R L LT G + Sbjct: 11 NLVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLESFLGRKLFIREPRALRLTVSGQRY 70 Query: 67 HRVTSEVYHKLETTQIELQES--SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +EV +L E E V+ L +A + + L L F +P+IQ+ Sbjct: 71 ----AEVVQRLLVGCAEATEDVMKVRSHTALTVACSTGVAVLWLTPRLASFRAAHPEIQL 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +LI+++ +S D + + + R+L + AP YL L+ Sbjct: 127 RLIVNDSLASLSAAEFDIGLYYLREGPPAGFAARRLYGEEVFPVCAPAYLGG--RALAPS 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243 L L+ D + M W A PR + L N Y ++Q + G GIAL Sbjct: 185 ALVNETLLMLDDGQRQWMSWQAWFAHQGVHDANPR-AFLTSNQYPILLQLAIEGQGIALG 243 Query: 244 ---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 + D ++D LVR E + Y +P +AFRN++ +A Sbjct: 244 WRHMIDGCLRDG-LLVRACEASASLGGGYYVVWPRDRMEPAAARAFRNWMVRQA 296 >gi|157371671|ref|YP_001479660.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323435|gb|ABV42532.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 319 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 11/285 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F VA GSF+ AA +L + SS+ R + LE+ + LF R RGL LT+ G Sbjct: 27 EHLPIFLEVALLGSFSAAARKLGMVPSSLVRHVDALESALDATLFIRSTRGLMLTDAGEM 86 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + EL S +P G LRI+ G+ + L YP + ++ Sbjct: 87 LQARAATLLSDISDIRAELASLSDRPQGTLRISCLPTFGKTYILPLLPLLAERYPQLFVE 146 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D + + D AIR+ + + S L ++ T A+P YL P + Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPAYLARYGRPADLNA 205 Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H LI + P C W + P+ + L+ + + + + +LG GI L Sbjct: 206 LPEHRLIARYHKQQPAC-----WAQILSAPLMDRCSLVLRCDDFTAQREAALLGLGITFL 260 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P+++V + L+ ++ED +Y P A K + +L F Sbjct: 261 PNWVVGPDIQAGRLLPVLEDPRQEQQGIYLLRPVA-KVSARLNLF 304 >gi|322832115|ref|YP_004212142.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321167316|gb|ADW73015.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 310 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 20/298 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR++ V GSF+ A + +S S++SR IS LE + +L YR+ R ++ TE G L Sbjct: 12 LRLYVAVLDQGSFSEVARREAMSPSTVSRVISQLEQALQTQLLYRNTRAVSPTESGKLLA 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +L+ ++LQE +P G +RI + GQ L L E YP + I+L+ Sbjct: 72 GHARQVLAQLDLATLDLQEQDSEPGGLVRINAPVVFGQRHLAPWLHELSTRYPRLNIELM 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ID D D IR+ + S+L R L + A+P YL +P + ++L Sbjct: 132 QTDDFIDPLQDSVDLLIRI-GVMADSTLQARTLGHQNFRLAASPAYLARAGKPETPEDLA 190 Query: 188 KHNLITF-GDLIPK----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F G P+ + W + R L N+ ++ Q + G G+ Sbjct: 191 SHSCLVFKGFAGPQRWYFRQPEQEWHSMTLR-------GLLTSNNAETLTQAGIDGMGLV 243 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLK 293 + P +++ D + LV ++E+ + T+ YP + + + K++A +F+ K Sbjct: 244 VFPTWLIGDALRDGRLVSVLENYQVSTSPEPQTISALYPNSRRPSIKVRAVIDFLLEK 301 >gi|283836411|ref|ZP_06356152.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] gi|291067785|gb|EFE05894.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] Length = 313 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE+ +G L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILESTLGTTLLNRSARGVVLTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + +P+G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHAQAILAGYQHLVDDVTQLKTRPAGMIRIGCSFGFGRSYIAPAITELMHSYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID++ D D IR+ I I L AAP YL+ EP+++QEL Sbjct: 131 LYDRQIDLAQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPTYLQKYGEPITLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + +++ L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGVWELDNGQEKKSVKVAGHLSSNSGEIVLQWALQGKGIMLRSE 246 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+ + LVR++ D S ++ Y E L + KL+ F+ Sbjct: 247 WDVQPFLASGELVRVLPDY-AQSANIWAVYKEPLYRSVKLRVCVEFL 292 >gi|258624253|ref|ZP_05719202.1| Transcriptional regulator, LysR family [Vibrio mimicus VM603] gi|258583404|gb|EEW08204.1| Transcriptional regulator, LysR family [Vibrio mimicus VM603] Length = 295 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 17/280 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 SGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+IQLI + R + S S L YA+P YL+ P Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTPK 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 ++QEL +HN++ +G+ + + + T RI+ + ++ G Sbjct: 181 TLQELTQHNVLCWGE------QTYREVKTAQ----GKRITLTGNFATTNPEALFYAGKAG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G+ + ++K+ NLVRI+ DV TVY YP+ Sbjct: 231 MGVIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPK 270 >gi|218462329|ref|ZP_03502420.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Kim 5] Length = 300 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 132/264 (50%), Gaps = 18/264 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V G F+ AA ++ S++S+ ++ LE +G++L R R L LT +G Sbjct: 11 EMEVFVSVVERGGFSAAAAVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + E Q SS + +G++RI T+ G ++L L F+ L+P + + Sbjct: 71 YERSIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLLPAFMALHPAVTLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +K ID+ + AD AIR P++SSSLI RKL A+P YL+ EP ++ + Sbjct: 129 IAHTDKVIDLMEERADVAIRA-GPLKSSSLIARKLGATGKIIVASPEYLRRHGEPRTLAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241 L +H I F + +E + R GE P +QV ++ + G+G+ Sbjct: 188 LRRHCRIGFS--YARAIEGWPM-----RESGETVTIPITPGIQVGDGEAMRHLALSGAGL 240 Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262 A L + V+ + LV ++E+ Sbjct: 241 ARLAAFTVRADIEAGRLVPVLEEA 264 >gi|254250472|ref|ZP_04943791.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124879606|gb|EAY66962.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 307 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 127/274 (46%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L F VAR +FT AA QL +SQS++SR + LE +GI L R R ++ TE G Sbjct: 8 DFNDLVAFMAVARERNFTRAAAQLGVSQSALSRTVRALEARMGIPLLTRTTRSVSPTEAG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L+ + +P+G +RI T + L+ L YP ++ Sbjct: 68 ERLLESIAPRFQEIEAELESLRAMTDQPAGNVRITATDYAANEYVWPRLQPLLRRYPALK 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+ D D+ D IRL + + QR + M +P YL + + Sbjct: 128 VELVNDYGLTDLVAGRYDIGIRLGDQVARDMVAQRIAPDMTMSIIGSPEYLASRPVTKTP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L +HN I +P +W + R + R+ L N+ ++ + G G+A Sbjct: 188 QDLTQHNCINL--RLPTRNALLSWELSKGRRELQVRVEGQLTFNNVYQMVDAALAGFGLA 245 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273 +P +V + R ++ED P+F + Y Sbjct: 246 YVPKDLVAHHVEAGRLGWVLEDWF-PTFVGHHVY 278 >gi|251836996|pdb|3HHG|A Chain A, Structure Of Crga, A Lysr-Type Transcriptional Regulator From Neisseria Meningitidis. gi|251836997|pdb|3HHG|B Chain B, Structure Of Crga, A Lysr-Type Transcriptional Regulator From Neisseria Meningitidis. gi|251836998|pdb|3HHG|C Chain C, Structure Of Crga, A Lysr-Type Transcriptional Regulator From Neisseria Meningitidis. gi|251836999|pdb|3HHG|D Chain D, Structure Of Crga, A Lysr-Type Transcriptional Regulator From Neisseria Meningitidis. gi|251837000|pdb|3HHG|E Chain E, Structure Of Crga, A Lysr-Type Transcriptional Regulator From Neisseria Meningitidis. gi|251837001|pdb|3HHG|F Chain F, Structure Of Crga, A Lysr-Type Transcriptional Regulator From Neisseria Meningitidis. gi|251837002|pdb|3HHG|G Chain G, Structure Of Crga, A Lysr-Type Transcriptional Regulator From Neisseria Meningitidis. gi|251837003|pdb|3HHG|H Chain H, Structure Of Crga, A Lysr-Type Transcriptional Regulator From Neisseria Meningitidis Length = 306 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L VF V SGSF+ AAEQL ++ S++SR + LE ++G+ L R R L+LT Sbjct: 1 MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ R + ++ + E+ P G L + + + + +LL +F YP Sbjct: 61 EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++ L+ I++ D A+R + + S L R L A+P YL P Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S +EL H + F + P + N A +D +IS S I++ C+ G Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L D++V ++ P L D P VY Y + N +L+ F +F+ Sbjct: 235 GIVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289 >gi|152986169|ref|YP_001345594.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961327|gb|ABR83352.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 296 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 132/285 (46%), Gaps = 20/285 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V GS AAE L L+ S++S+QI LE+ + L +R R LTLTE G +R Sbjct: 9 IFATVVDKGSMAAAAESLGLTPSAVSQQIRRLESRAQVTLLHRTTRRLTLTEAGEAFYRS 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +++ E + L E P G+LR+A + L +L+ LK L + +++QL Sbjct: 69 CAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGLSGSLITQALKPLLEDHRQLRLQLFFQ 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ ID+ + D AIR+ + SSL+ R L + AAP YL+ R PL E Sbjct: 129 DERIDLVAERIDLAIRVGN-LADSSLVARHLGDWNHILCAAPGYLRQ-RAPLKRPE---- 182 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVLGSGIA 242 L+ + FN L T+ G EPR++ N L++ Q+ + G G++ Sbjct: 183 QLLELDWIALNTASQFNLL-TLTGADGEVCKLRLEPRVAA---NGMLAVRQFTLDGLGVS 238 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 P V+ D L R++ + P ++ P K+K Sbjct: 239 CQPLPEVREALDAGRLQRLLPEWKLPDLGIHAVTPRRDAQPAKVK 283 >gi|90023617|ref|YP_529444.1| transcriptional regulatory protein [Saccharophagus degradans 2-40] gi|89953217|gb|ABD83232.1| LysR, substrate-binding [Saccharophagus degradans 2-40] Length = 315 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 146/290 (50%), Gaps = 22/290 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD LR F +AR GS + A+ +L ++ S+++R+I+ LE + G+KLF R G LTE G Sbjct: 19 NWDDLRYFLELARCGSLSGASRELGVNHSTVARRIAALEKKHGVKLFNRQPNGYQLTEAG 78 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +++ E+ + +T + L + SGKL + +L + + L++F YPD+ Sbjct: 79 DVIYQHALEIEQQNQTVERLLYAGDTRLSGKLVVTMPHELANHCIIPYLQDFTGKYPDVD 138 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++ ++S AD A+R+ P +L+ +KL + Y + + Sbjct: 139 LELVVSPGLKNLSAREADIAVRV-TPAPPETLVGQKLANLRHAVYFSKQH---------P 188 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 Q L + +I + +D N A + ++ L+V+ S+ +G GIA Sbjct: 189 QVLAEQKIIIW-------RQDTNPPAWAQQHFPNAKV-VLKVDDLASMYAAVKVGIGIAR 240 Query: 244 LPDYIVKD--NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290 +P Y+ + ++ + ++ +TPS + ++ + L+ T +++AF+ F+ Sbjct: 241 MPCYLPDSVLDADIFK-LDLALTPSDWGIWVLHHADLRETARVRAFKQFL 289 >gi|70731062|ref|YP_260803.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345361|gb|AAY92967.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 305 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 14/301 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F V A+ GSF+ AAEQL + S++++ ++ LE E+G +LF R R + LTE G Sbjct: 5 NALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLEAELGSRLFERSTRRIVLTEIGRL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +LE E+++ G L++ + GQ L FL YP I +Q Sbjct: 65 YLETARQVLQRLEEVGEEVEQLQHGLRGNLKVTAPLAYGQAFLDQVCGGFLEQYPQINLQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +++ D A+R LI R + + + A+P YL P++ Q Sbjct: 125 VDLCDEFVNLLESGYDLALR-EGHDDLPGLIARVVGSNRLALCASPAYLARKGRPVTPQT 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + P +F W+ + + +P+ L+ ++Y ++ + G G+ Sbjct: 184 LEEHEWLLYRH--PLLSREFWWVERDGQRLSLPQPQAPRLRSDNYDLLLANALAGRGLLH 241 Query: 244 LPDYIVKD---NPNLVRIMED-VITP-SFT--VYFCYPEALKNTGKLKAFRNFI--FLKA 294 P + + LVR+M D I P SF + YP + T K++AF +++ FL + Sbjct: 242 TPLWSAAPYLADGRLVRVMADYAIDPDSFGPHILAVYPSHRRATAKVQAFIDYVSGFLAS 301 Query: 295 R 295 R Sbjct: 302 R 302 >gi|13472958|ref|NP_104525.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023705|dbj|BAB50311.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 311 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 9/285 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F V +GSFT AA++L ++++ +S Q+S LE E+G L R R +T TE G Sbjct: 8 NRLVYFTTVMEAGSFTSAADRLGVAKAVVSHQVSKLEDELGATLLQRTTRRVTPTEDGRL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + E E+ +V+PSG LR+ +D G ++ + +L YP ++++ Sbjct: 68 FYDRAMIILREAEAAYGEISHGAVEPSGTLRLTAPLDYGTRVVAPVMAAYLKAYPQMRVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 I D+ ++ + D IR+ + SS R+L TI A+P + + P Sbjct: 128 AIFDDAVSNLVDEQIDLGIRVGW-LADSSNQARRLGTIRQIVVASPTFAASL--PADANP 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 +L G+ + + WL + + ++ + V CVL G G+ + Sbjct: 185 NQARSLAWVGNAQLRGVG--QWLFSRNGETVLTELNPVVVCDKSPAAYACVLAGIGLGIF 242 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 PDY V ++ LVRI P+ ++ +P A K++AF Sbjct: 243 PDYAVDEDIAGGRLVRIFAQWTLPTGGIHAVFPPARFRPAKVRAF 287 >gi|91213027|ref|YP_543013.1| transcriptional regulator YhjC [Escherichia coli UTI89] gi|117625804|ref|YP_859127.1| putative DNA-binding transcriptional regulator YhjC [Escherichia coli APEC O1] gi|218560596|ref|YP_002393509.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|237703290|ref|ZP_04533771.1| transcriptional regulator YhjC [Escherichia sp. 3_2_53FAA] gi|306816127|ref|ZP_07450265.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|91074601|gb|ABE09482.1| hypothetical transcriptional regulator YhjC [Escherichia coli UTI89] gi|115514928|gb|ABJ03003.1| putative DNA-binding transcriptional regulator YhjC [Escherichia coli APEC O1] gi|218367365|emb|CAR05144.1| putative DNA-binding transcriptional regulator [Escherichia coli S88] gi|226902554|gb|EEH88813.1| transcriptional regulator YhjC [Escherichia sp. 3_2_53FAA] gi|305850523|gb|EFM50980.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|307628600|gb|ADN72904.1| putative DNA-binding transcriptional regulator [Escherichia coli UM146] gi|315286209|gb|EFU45645.1| LysR substrate binding domain protein [Escherichia coli MS 110-3] gi|323949762|gb|EGB45646.1| LysR substrate binding domain-containing protein [Escherichia coli H252] gi|323954937|gb|EGB50717.1| LysR substrate binding domain-containing protein [Escherichia coli H263] Length = 323 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGITYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|294490372|gb|ADE89128.1| transcriptional regulator, LysR family [Escherichia coli IHE3034] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGITYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|271499940|ref|YP_003332965.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270343495|gb|ACZ76260.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 300 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 4/193 (2%) Query: 5 WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +++L AR+G S+T AA L +S S+IS+ I LE +G+ LF R R L LT Sbjct: 7 FERLTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEKHLGVTLFTRTTRSLVLTA 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +LH ++ E + + SS +P+G LRIA ++ +G +++ L EF L+P Sbjct: 67 AGRELHERALQLLRDAEEIEQIAKRSSAEPAGMLRIAASLPVGIHMIAPVLAEFCALHPK 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I L L ++ + I + D A+R+ + S+L+ R+L + YA+P YL + P Sbjct: 127 VTIDLRLSDRVVSIVDENIDIAVRIGD-LADSNLLSRRLPPYQIGCYASPEYLAHSPLPT 185 Query: 182 SIQELDKHNLITF 194 +L H I Sbjct: 186 HPNDLIGHKTINL 198 >gi|254472558|ref|ZP_05085957.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211958022|gb|EEA93223.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 299 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 141/301 (46%), Gaps = 16/301 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++VF VA SF A+++L LS +++R ++ LE +G +LF R R + LT+ G Sbjct: 5 ETMQVFVEVAERESFVEASKKLGLSAPAVTRSVARLEQSLGTRLFNRTTRHVRLTDAGRH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + + S KP G+L I + GQ + + ++L LYP++ + Sbjct: 65 YLCDVKGILESVDQAEAAVTGSFAKPIGELSITAPVLFGQKYIIPLITQYLDLYPEVSVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +++ D D AIR+ +Q SSL ++ +I AAP Y P + + Sbjct: 125 AVFYDRIVNMVEDNLDVAIRIGN-LQDSSLYATRVGSIRRVICAAPEYFAEYGVPQTPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGI 241 L H +I P +E N W + ++ +P + C N + +Q G+GI Sbjct: 184 LADHKIIQ-----PTAVETSNQWKFSGEKSEVVKIKPHLRC---NQNCAAIQAATGGAGI 235 Query: 242 ALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 L Y + KD N L +E+ V+ Y E + + K+++F +F + RD Sbjct: 236 TRLLSYQVAKDVANGALQLALEEYEPDPLPVHIVYMEGRRASAKVRSFVDFAAKRLRDNP 295 Query: 299 F 299 F Sbjct: 296 F 296 >gi|323529807|ref|YP_004231959.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386809|gb|ADX58899.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 341 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 10/291 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68 F VA GSF A E+L + +S++SR + LET++ +LF R R LT++G + Sbjct: 35 AFMAVATEGSFAKAGERLGIGRSAVSRNVQKLETQLSTRLFLRTTRTTNLTQEGERFFEN 94 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 V H +E L P G LR+ +T+ G+ ++ L +F YPDI + L+L Sbjct: 95 CNRGVTHIVEAMNDMLDLREGPPRGFLRVCSTVGFGRKVVAPLLFKFSEAYPDIAVDLLL 154 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 D++ D + + D A R I+ S +I ++L+ + M A+ Y + P S+++L++ Sbjct: 155 DDRPADFAAEQIDVAFR-DGCIEDSCIIAKQLIPMQMLLCASRAYAEERGLPSSLEDLEQ 213 Query: 189 HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ I + +E DF + + + R L N ++Q + G G+A +P Y Sbjct: 214 HDCINL-RFNGRVLEWDFKLDGRMRKYLPNAR---LTFNDANLVLQAVLEGRGVAQMPGY 269 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + D LV + + Y CY +++ F +F+ + R Sbjct: 270 QISDYLERKELVPALRRYVPDDRGHYICYRCRQNLPSRIRVFVDFMTAEIR 320 >gi|209519759|ref|ZP_03268546.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209499832|gb|EDZ99900.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 302 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 11/292 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V GSF AA+ L S ++++R ++ LE +G +L R +R L+LTE Sbjct: 2 DRLRAFEVFVTVVNRGSFARAADALETSPANVTRYVNELEAHLGARLLNRTSRRLSLTES 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + + T+ + +S++P G+LRI + G L +F+ YPD+ Sbjct: 62 GETLYSRCKAILEDVAETEGLVSTTSIEPRGRLRINAPVSFGIRYLAPLWPQFMQHYPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +DI + D AIR+ + + RKL T A+P Y+K P + Sbjct: 122 ELDITLIDRVVDIVEEGFDLAIRISR-AGTVDHAARKLATSRNILCASPDYVKRWGHPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +L H I + D L + ++C + N+ + + G G+ Sbjct: 181 PADLLGHRCIGY---TYAATADEWQLMDHNGKSHAVEVNCHMHTNNGDTARGAALAGHGV 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +++ ++ LV+++ + P V YP + K++A +F+ Sbjct: 238 IWQPTFLIGEDLRAGRLVQLLPEYRLPDIDVLALYPSRRHVSAKVRAAVDFL 289 >gi|193068517|ref|ZP_03049479.1| transcriptional regulator, LysR family [Escherichia coli E110019] gi|192958168|gb|EDV88609.1| transcriptional regulator, LysR family [Escherichia coli E110019] Length = 323 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ + R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALSAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|171317475|ref|ZP_02906666.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171097371|gb|EDT42215.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 295 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 13/250 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SF AA +L++S SS +R + G+E +G +L R R L+LT+ G H Sbjct: 7 MRLFIKVAELHSFARAATELNISNSSATRLVMGIEDRLGARLLNRTTRSLSLTDAG---H 63 Query: 68 RVTSEVYHKLETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +++ H +E +I+ E ++ +P G L+IA + G ++L + F L+P I Sbjct: 64 LYLAQIRHVIE--EIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ +D+ + D + L + I +++LI R L + M AAP Y+ P+ Sbjct: 122 VPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLITRPLTRLKMIVCAAPRYVDARGAPIH 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H +TF F+ T R P S N L I + + G GIA Sbjct: 182 PHDLASHAYLTFHADFAGEYLSFDHEPT--RVAVRPNKSASSNNIGL-IRNWALSGMGIA 238 Query: 243 LLPDYIVKDN 252 +LPD++V+ + Sbjct: 239 VLPDFLVESD 248 >gi|312959577|ref|ZP_07774094.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311286294|gb|EFQ64858.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 301 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 14/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GS + AA+ L LS+ +SR ++ LE VG +L +R R L+LT GS+ Sbjct: 7 MRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLLHRTTRKLSLTAAGSETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ Q + E P G LR++ + GQ L + E++ YP + + L Sbjct: 67 PRCRQLLELCGDMQAAVSEPDDAPRGLLRLSVSTSFGQAQLAEAIAEYVKRYPLVTVDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +++ + D AIR + +LI R+L A P YL+ P +++L Sbjct: 127 MLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCATPAYLREHPAPQKVEDLA 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +HN +T FG + E+ ++ P + N ++++ + G G+A+L Sbjct: 186 RHNCLTHSYFGKSLWHFEENGEHVSV-------PVHGNITANEASTLLRVTLAGVGVAML 238 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y D+ LVR++ V +Y Y L++ +++ Sbjct: 239 PSYQAGDHIRRGELVRLLPQVEPRQMNIYAVYASRKHMPSALRSLLDYL 287 >gi|300693925|ref|YP_003749898.1| transcriptional regulator, lysr family [Ralstonia solanacearum PSI07] gi|299075962|emb|CBJ35273.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 300 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 124/279 (44%), Gaps = 14/279 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + L F VAR GSFT AA +L ++QS++S+ +SGLE + I+L R R ++ T G Sbjct: 5 NLNDLLAFVTVAREGSFTRAAARLGVTQSALSQTVSGLEARLKIRLLMRTTRSVSATAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++ET L E KP+G +RI + + +L L L YPDI+ Sbjct: 65 ERLVQAIGHRFDEIETELDALTELRDKPAGTVRITCGDQVLKTVLLPKLTPLLQAYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ ++ DI D D +R + + R + + M A+P Y P + Sbjct: 125 LEFDINYGFRDIVADRFDAGVRFSNTVDKDMIAVRIGLDMRMAVVASPTYFAEHPAPKTP 184 Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++L H I T+G L D R + L +N+ I G Sbjct: 185 RDLVHHRCINIRFPTYGGL------DVWEFERRGRKLKIRVDGQLVLNTTPHIAAAAANG 238 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 G+A LP+ + LVR++ED P + YP Sbjct: 239 LGVAYLPEDEFSPHIEEGRLVRVLEDWCPPFSGYHLYYP 277 >gi|241662987|ref|YP_002981347.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240865014|gb|ACS62675.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 300 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 128/294 (43%), Gaps = 16/294 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS + AAE L +S++ ++R ++ +E G +L +R R + LT G Sbjct: 9 VFVAIVERGSLSAAAEALGMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + + P G LRIA L Q L + +L YP + L++D Sbjct: 69 CRQMLEIASQMAVADGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ I++ + D A+R+ + +LI R L AAP YL P + +L H Sbjct: 129 NRTINLVEERIDLAVRITNDLD-PNLIARPLGLCESVVVAAPSYLAAHGTPRRVPDLAVH 187 Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 N +T FG + K E A D P+G L N + ++ G+G+AL P Sbjct: 188 NCLTYSYFGKSLWKFTEAKTG-APSDVPVG----GNLSANESMVLLAAAREGAGVALQPV 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + + LVR++ D + + ++ Y + L+A +F+ DW Sbjct: 243 FAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLV----DW 292 >gi|330816209|ref|YP_004359914.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327368602|gb|AEA59958.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 332 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 138/289 (47%), Gaps = 18/289 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +A+ GS + AA + L+ + ++++ LE +G +L R R ++LT +G R Sbjct: 12 FVQLAKLGSLSGAARSMGLTPPAATKRLGILEARLGARLVNRTTRSISLTPEGETYARYA 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + ++ + + + P G+LR+ T+ G+ + + EF YP + +Q ++ + Sbjct: 72 ARILEQVREMEDAIAGTPADPHGRLRVNATLGFGRTTIAPLVSEFAKRYPHVDVQFVVTD 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 K +D+ D AIR + + L R+L++ A+P YL+ PL ++L H Sbjct: 132 KPVDLVEGGFDMAIRFGE-LPDGRLRARRLMSNRRFLCASPKYLERAGTPLRKEDLVAHR 190 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIALL 244 I I +D + + I + + L+VN LS ++++ + G GI + Sbjct: 191 CI-----IHSQNDDAHGVWNF---IQDDHLEALKVNGSLSSNDGDIVLRWALDGHGILIR 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + L ++ +V+ PS +Y YP K + + +AF +F+ Sbjct: 243 SEWDLAKYLQSGRLRLVLPEVVLPSADLYVYYPGQRKQSARSRAFIDFL 291 >gi|319782542|ref|YP_004142018.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168430|gb|ADV11968.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 297 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 12/296 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V SFT AA L L +S+ + I LE +G +L R R + T+ G Sbjct: 5 DTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + ++E + + + +P G LRI + L + L L EFL YP I +Q Sbjct: 65 YYRRCLSILAEIEDAEAAFR--NAEPFGLLRIDASTLLTRTFLLPRLPEFLDRYPRIDLQ 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC IR+ +P S +I R+L IH A+P YL+ P S Sbjct: 123 IGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLAMIHEITCASPAYLERHGTPASPDA 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 LD H + F + + E + TV I E R+ + N+ + LG G+ Sbjct: 182 LDGHQAVGF--VSSRTGETLPFEFTVAGNIREVRLPGRVAANNSDTAADLARLGLGLIQA 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294 P Y + + LV ++ D + YP+ + + +L+ F ++ IF +A Sbjct: 240 PRYRFEKDLAEGTLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWASRIFAEA 295 >gi|296100376|ref|YP_003610522.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054835|gb|ADF59573.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 315 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 8/244 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +GSF AA +LHLS+S++ + I+ LE +G++LF+R R +LT+ G+ + Sbjct: 10 VFVAAVEAGSFAQAAIRLHLSRSAVGKSIARLEERLGVRLFHRTTRSQSLTDNGALFYER 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + L+ + SG+LR+A + G+ + L E +P +++++ Sbjct: 70 CLRALEEIRGAESLLETGKQQISGRLRVAMPVLFGRQCVAPLLIELAQEHPGLELEMSFS 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R SS L+ R+L M AAP YL+ +P ++ +L H Sbjct: 130 DRVVDLVEEGFDMAVRNGTLQDSSVLVVRRLGEHRMVLCAAPEYLQKSGQPDTVADLPHH 189 Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I + G ++P + D + P S L ++ +I + G GIA LP Sbjct: 190 TAINYLRAGRVLPWQLMDNEGRSHTFTP-----RSSLNMDDLQAICDAALAGYGIAWLPC 244 Query: 247 YIVK 250 ++ + Sbjct: 245 WMAR 248 >gi|227326914|ref|ZP_03830938.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 298 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 11/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+ F VV +GS T AAEQL + S ISR + LE ++G L +R R L+L+ Sbjct: 1 MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G +V H +E + ++ +PSG+LR+ + Q+++ + EF YP Sbjct: 61 EEGMMFLEHARDVIHAVEHAEEQVLLRHEQPSGRLRVNSGSAFMQHVIVPLVPEFRRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L ++ ID+ + D AIR+ ++ S++ R L + A+P YL+ P Sbjct: 121 KIVLELNTNDFIIDLLEQHTDIAIRI-GTLKDSTIHARPLGASKLRIVASPDYLEQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +++ L H + F E N W P L ++ + Q + G Sbjct: 180 ATVESLADHRCLGFTQ-----SESLNHWPLRHGLQDFYPVTPVLLASNGEILRQLALQGE 234 Query: 240 GIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + +++++D+ R++ E+ + S VY Y + ++ F +F+ Sbjct: 235 GIVRMSNFLIRDDLATGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDFM 289 >gi|146309378|ref|YP_001189843.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145577579|gb|ABP87111.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 352 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 16/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F + +GS + AA QL+ +Q ++SR++ LE +G++L R G+ LT G + + Sbjct: 46 LRTFVRIVDAGSLSAAAAQLNTTQPTVSRRLQTLERSLGLQLLNRTTHGMQLTGDGERCY 105 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V + EL + P G LR+ GQ+ L L E+L YP + ++ + Sbjct: 106 TYARQVLESWTEMEDELIGAREDPRGTLRVQVPHAFGQDQLIAPLGEYLRRYPKVSVEWV 165 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D + + DCAI++ I+ S++ +L + AAP L + P S ++L Sbjct: 166 LHDRSPDFTAEGIDCAIQV-GFIEDPSVVAIRLGEVPRIVVAAPELLGDEPLPASTEQLQ 224 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + +++ C+ D R +PR+S +S ++ + G G Sbjct: 225 RLPWLALRTYYTDEVVLTCLRD----GRSHRFAIQPRMS---TDSLYALRSAALAGLGAC 277 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +IV + LV+++ VY YP A KL+ F I Sbjct: 278 VSSAWIVARDIEEGRLVQLIPQWQAAPLPVYLIYPHARSYPAKLRLFAELI 328 >gi|332526828|ref|ZP_08402928.1| transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111229|gb|EGJ11261.1| transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 298 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 133/288 (46%), Gaps = 4/288 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+ VA GSFT AA++L L ++++S + LE +G +L R R ++LT+ G Sbjct: 4 EDLRIVLRVAELGSFTEAAQRLGLPRATVSTAVRRLEERLGARLLQRTTRRVSLTDDGRL 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V L+ + Q+ +G+LR+ + + + L+ L EFL L+P + ++ Sbjct: 64 FVERCQDVLADLDELRTMFQQQPQALTGRLRVDMPLAMARALVLPRLPEFLALHPGLAVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D + D IR+ + + L+ R L M A+P Y+ EP S+++ Sbjct: 124 IGAADRRVDPVREGYDAVIRVGA-VVAEQLVGRPLGAYTMVNVASPGYVARHGEPRSVED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ + + F +LA + VN+ + + C G GI +P Sbjct: 183 LAAHRLVHYQPNLGDRPAGFEYLAADGSLRSVTMAGVVTVNATDAYLAACEAGLGIIQIP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + LV ++ + P V P +++AF +++ Sbjct: 243 EASARPGLEAGRLVALLPAFVPPPMPVTLLLPHRRHLPRRVRAFADWV 290 >gi|330446400|ref|ZP_08310052.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490591|dbj|GAA04549.1| bacterial regulatory helix-turn-helix, lysR family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 306 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 137/294 (46%), Gaps = 20/294 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F + A SFT AAE + L+QS++S +I LE +G++LF R R L LT++G +L Sbjct: 14 LHCFLIAAEQMSFTRAAEVMFLTQSAVSHKIKNLEDALGVQLFIRQPRKLILTDEGVRLK 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V + + + +L+ +V+ SG + I+ Q L LK F+ LYP ++I L Sbjct: 74 QVLAANFGDIAYEIRDLK--NVELSGDINISVPPTFAQTWLLPRLKSFIDLYPALRIHLR 131 Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 N +D + DCAI K + + L+ + + H YA H L + E L Sbjct: 132 TRNDLVDFQTESFDCAIYFGKGEYQGLHTCKLMDESMQPVCSHDYAVAHNLYDHPESL-- 189 Query: 184 QELDKHNLITFGDLIPKCMEDFN--W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + + D P N W L I P C S L+ +Q G G Sbjct: 190 -----MSCLLLHDAAPWARAGRNDEWQLWAEQYGIQLPESECTFDRSDLA-LQAAECGMG 243 Query: 241 IALLPDYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291 +A+ + + R++ D++T S F+ Y ++NT K+KAFR+++F Sbjct: 244 VAMGRQSFIAEKLAQQRLVTPFDMMTSSPFSYYVVCRHNMQNTPKIKAFRDWLF 297 >gi|254505158|ref|ZP_05117309.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222441229|gb|EEE47908.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 25/286 (8%) Query: 17 SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76 S F+ AA + S++ +S+ +S LE E+G++L R R +++TE G ++ SE+ + Sbjct: 3 SKGFSAAARDMGRSKALVSKYVSELEDELGVRLLNRTTRQVSMTEVGESYYKEASEILQR 62 Query: 77 LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136 ++ Q +Q S + G+LR++ +G LL + EFL +PD+ + L L+++ +D+ Sbjct: 63 IDDLQASVQSSQQEIRGRLRVSAPRSMGDKLLNAAMMEFLAQHPDVVLDLRLEDRFVDLV 122 Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196 + D A+R+ + ++ SSLI RK+ A+P L P +L I + Sbjct: 123 EEGFDIAVRVTQ-LEDSSLIARKIAPFRTVICASPELLAKVGVPNIPADLADRPCIIDTN 181 Query: 197 LIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 K NW + TV P+ +VNS ++ + + G G +P + Sbjct: 182 YRYKQ----NWAFGSQGERQMVTVKGPV--------EVNSAEAVCEAALQGLGFIRMPLF 229 Query: 248 IVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V + N R ++ + P +Y YP T K++A +F+ Sbjct: 230 FVSEYINEGRLKIVLAEHEEPMRGIYAVYPHRRHLTVKVRALVDFL 275 >gi|206575917|ref|YP_002237680.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206564975|gb|ACI06751.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 293 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 8/265 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R V R+GS AA L++ Q++++R++ +E E+ LF R+ G LTE Sbjct: 1 MNWDNIRYLLAVVRTGSL-RAAVSLNVDQATVARRLRHMEAELNTALFNRYPEGYRLTEY 59 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L ++ T + + + +GK+ IA+T LG L L +PDI Sbjct: 60 GERLLPDIEQMEATAATIERKSAGMNTSLAGKVYIASTDSLGSCFLLPALSALRQRHPDI 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L + +DI AD A+R +P +LI R+L T H YA+ Y+ P+ Sbjct: 120 QVTLSTSPEIVDIRRGAADLAVRSARP-SDGNLIIRRLATFHTGLYASEEYVARRGLPVP 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H L+ F P+ W P+ I L+V S ++ G G+ Sbjct: 179 GSAFSGHGLVMF----PETSVPQYWQRLCGEPLTNGHI-VLEVTSQWLFIEALRQGLGVG 233 Query: 243 LLPDYIVKD-NPNLVRIMEDVITPS 266 ++ IV+ P LV +M P+ Sbjct: 234 MMAGEIVQRCCPELVNVMPTRSEPA 258 >gi|309781251|ref|ZP_07675988.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308920072|gb|EFP65732.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 298 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 148/304 (48%), Gaps = 21/304 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V +GS T AAEQL + S +SR + LE ++ L R R L+LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + ++ + ++ +P+G+LR+ + +++ + +F YP Sbjct: 61 DEGATFLAQARRILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++L ++ ID+ + D AIR+ ++ S+L R L T + A+P YLK P Sbjct: 121 QIELELNTNDLIIDLLEEDTDVAIRI-GTLRDSTLRARLLGTRRLRVLASPAYLKTHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L KH L+ F + P+ + + DR EP L+ +S ++ Q + G+ Sbjct: 180 RHVDDLQKHALLGF--VQPESLNQWPLRGPYGDRLRIEP---TLKASSGETLRQLALQGA 234 Query: 240 GIALLPDYIV---KDNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291 GI L D+I + +LV+++ D V+ P VY+ +NT F+ F Sbjct: 235 GIVCLADFITVEDRRTGDLVQVLSDATVEVLQPIHAVYY------RNTQLASRIACFLDF 288 Query: 292 LKAR 295 L+AR Sbjct: 289 LEAR 292 >gi|213969611|ref|ZP_03397747.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|301384839|ref|ZP_07233257.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302059204|ref|ZP_07250745.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] gi|302130843|ref|ZP_07256833.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925707|gb|EEB59266.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VAR SFT AA +L ++ S++S + LE +G++L R R + TE G + Sbjct: 7 NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGEQ 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +L+ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + AP Y +N PL Q+ Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFENHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +P + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289 >gi|332087235|gb|EGI92368.1| HTH-type transcriptional activator aaeR [Shigella boydii 5216-82] Length = 309 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNPPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240 >gi|222083034|ref|YP_002542399.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727713|gb|ACM30802.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 303 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 139/285 (48%), Gaps = 12/285 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++LR F +A + T AA +L +S+S +SR+++ LE +G++L R RG LTE Sbjct: 1 MDIEELRTFVEIADATGVTQAARRLGVSKSLVSRRLARLEQFLGVQLLARTTRGAFLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ +++ + E + E S G+LR+A + G L + +P + Sbjct: 61 GATFREHAAKICSEFEVAR-EATLPSGDLRGRLRVAAPLSFGPTHFAPILSQMARRHPQL 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI ++ +D+ + DCAIRL +Q S+LI R++ +I A+P Y++ P++ Sbjct: 120 QILSSYTDRFVDLVGEGFDCAIRLGH-LQDSALIARRVGSIFGILVASPEYIEAHGAPVT 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 E+ H ++ D + M D + + TV RP G +S +S++ + G GI Sbjct: 179 PDEIVNHQVVMRDDERWQFM-DGDKIVTV-RPQGR-----FVADSGISLVSATLDGIGIG 231 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 LP+ +V D + LV IM P ++ P + K++ Sbjct: 232 YLPEPLVADHVRSGALVPIMTRHPIPPAGMFVVRPPGQHPSRKVR 276 >gi|152994122|ref|YP_001338957.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835046|gb|ABR69022.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 296 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 141/302 (46%), Gaps = 23/302 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F A S T AA+ L ++ +++SR+IS LE ++G +L +R +GLTLT G Sbjct: 3 DDLKIFITAANKNSLTAAAQHLDMTIATVSRRISALEQKLGCELLHRSTKGLTLTPVGES 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R +E L+ L ++ G L++ ++LG L ++F+ LYPDI++ Sbjct: 63 YYRECAEFIDALDQRISNLDQTLNSLKGDLKVLAPVNLGSGPLDAFWQDFVQLYPDIELN 122 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N DI AD A+R +P SSSLIQ+KL I A+P+ P +I+ Sbjct: 123 IELSNTLQDIRDTRADIALRSGNQP--SSSLIQKKLGHIEPILVASPNMAFPL--PKTIE 178 Query: 185 ELDKHNLIT---FGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L I F D L+ ED L R I N + G+G Sbjct: 179 DLQHAPSIASNMFADWLLINNQEDRRPLNKEHRHIS---------NDMTITLNLAKAGAG 229 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP--EALKNTGKLKAFRNFIFLKAR 295 IAL+P +V + L+R++ + + ++ +P +L KL FL + Sbjct: 230 IALIPMSMVHGALETGELIRVLPEWRGQNREIFLVWPYRRSLSARAKLLKEEMTKFLHQQ 289 Query: 296 DW 297 W Sbjct: 290 TW 291 >gi|299067415|emb|CBJ38614.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 309 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 16/277 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + +FL +PD+ I L Sbjct: 66 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L AAP YL+ P +++L Sbjct: 126 DLADRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 HN + FG W+ TV +G ++ + ++C+ G G+ Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQGGKTVTVKVG----GTMECTDGAVLREWCLQGHGL 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 A + V + LV +++ P ++ +P+ Sbjct: 238 AWRSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQ 274 >gi|149919115|ref|ZP_01907599.1| putative LysR family transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149820045|gb|EDM79466.1| putative LysR family transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 304 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 129/275 (46%), Gaps = 11/275 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ +F VA +G+F L L+ S+ S+ + LE+ +G KL YR R ++LT++G Sbjct: 8 NEILIFMAVADAGTFVGGGRALGLTGSAASKAVLRLESRLGAKLLYRTTRAVSLTDEGRA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +E + + +P G LR+ G+ +L ++ +L +P ++++ Sbjct: 68 FYKGGVRIVEAIEAAESSVGGDVGEPRGTLRLTVPDAFGRRVLMPLVRGYLERWPSVRVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D AIR+ S LI R + + A+ YL P ++ E Sbjct: 128 ISFTDRPVDLVEEGFDLAIRIGGASASEGLISRVVARYEVFMCASQAYLDAEGTPRTLGE 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV---DRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L+ H I F W T +R PR S + ++S +I + G GI Sbjct: 188 LEAHEGIVF----RSGTTSQAWTLTSADGERARHRPR-SRVALDSGEAIRDATLAGLGIG 242 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LP+++V ++ LVR++ ++ + YP Sbjct: 243 YLPEFLVGEDLGAGRLVRLLPEIDAGVAQIVALYP 277 >gi|330957650|gb|EGH57910.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. maculicola str. ES4326] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VAR SFT AA +L ++ S++S + LE +G++L R R + TE G + Sbjct: 7 NDLQAFLMVAREQSFTKAATKLGVTPSALSHTLRALEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQISAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFEKHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +PD + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPDSLAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|238894388|ref|YP_002919122.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238546704|dbj|BAH63055.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 294 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 13/278 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+ + L+ L PSG +RI + +L L F YPDI+ Sbjct: 66 EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI D +RL + S + R + M P + + P + Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H I FGD + W VD + P+ +SY+ + LG Sbjct: 186 ADLVAHPCIAYQFGD-----GSLYAWELNVDGKKITHPPQGQWAFADSYME-AKAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G+A +P+ ++ D+ L+R+++ Y YP Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQRYSQRLEGSYLYYP 277 >gi|197295463|ref|YP_002154004.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|195944942|emb|CAR57554.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 295 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 19/290 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 WD LR+ VA++GS AA +L +S +++ R+++ +E E+G+KLF R G T Sbjct: 6 LSWDDLRLVLAVAQAGSLAGAARRLGISHATVFRRLAAIEAELGVKLFERTRAGYAPTPA 65 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + + V+PSG +R+ TT L LL F P+I Sbjct: 66 GEDAAAAAERIQDEVHGVERRVAGRDVRPSGTVRVTTTDTLLSGLLSPVFAAFRHACPEI 125 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + N D+S AD AIR P S LI R++ TI YAAP + + + Sbjct: 126 TLEVSVSNAVFDLSKREADVAIR---PSSSPPEVLIGRRVGTIAQAVYAAPGWRERA-DD 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L+ D+ + + +E + D G +V++ L + G G Sbjct: 182 LAWVGPDRR-------MGYRPLERWMHAHGADARCG------YRVDTLLGLFAAARAGIG 228 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP Y+ D +LVR+ + + ++ L++T +++AF +F+ Sbjct: 229 AAVLPCYLADDERDLVRLGGRIDELATDLWLLTHPDLRDTARIRAFSSFV 278 >gi|163734345|ref|ZP_02141785.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] gi|161392353|gb|EDQ16682.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] Length = 304 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 10/286 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +SFDW+++R F A GSF+ AA L +Q +I RQI LE +G+ L R RGLTLT Sbjct: 6 ISFDWNQVRAFLATAEEGSFSGAARVLKTTQPTIGRQIGALEEALGVTLVERSVRGLTLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G L T + + S + SG++ + T L +L G LK Sbjct: 66 EAGRDLIDHTRTMGEAATLISMVADGKSQEVSGEVTVTGTDLLSAAILPGVLKPLRQTAS 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++++ ++ +++ AD AIR +P Q LI R L + YAA YL P Sbjct: 126 GIRVRIHASSEMQNLTQREADIAIRHVRPDQ-PDLIARHLGDFRANLYAATDYLDRAGRP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--G 238 + +++ + + G+ P+ + L + P+ R ++S ++ + ++ G Sbjct: 185 HTPRDVATLDFV--GNADPERL--MAPLHNMGVPV---RAESFVMSSESGVVAWELVKAG 237 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G+++ P+ + + P L +++ D + F ++ L+ + +++ Sbjct: 238 YGVSMQPETLGEAEPGLEKVLSDFPSLEFPIWLVTHRELQTSRRIR 283 >gi|126724944|ref|ZP_01740787.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] gi|126706108|gb|EBA05198.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2150] Length = 292 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 12/260 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD++R Y VAR G+ + AAE + + ++I R I LE ++G KLF RHARG T TE G Sbjct: 7 DWDQVRTAYHVARLGTVSAAAEVMGVHHATIIRHIDALELQLGTKLFQRHARGYTATEAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L RV +L L+ G L I T+++ + L F +PD++ Sbjct: 67 NDLLRVADATQDQLSQLAGRLKGQGEAIKGDL-IVTSLEFMSPYISPILARFQQKHPDVE 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+ + D + + A AIR+ + + + L M + A Y++ +P Sbjct: 126 IRFLTDERLFRMEYGEAHLAIRVGQKPSDPDYVVQPLRQFSMGLFGAKSYIEKFGQPKGF 185 Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H + F G P WL ++ + E +V S +S G G Sbjct: 186 ADLKDHRFVGFEGGGSRAPTQ----TWL--IENALAEN--VTYKVTSTMSAFDAIQAGVG 237 Query: 241 IALLPDYIVKDNPNLVRIME 260 + + I + + NLV+ +E Sbjct: 238 LGFVSHDIGERDSNLVQCLE 257 >gi|37527791|ref|NP_931136.1| hypothetical protein plu3936 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787227|emb|CAE16308.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 7/248 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F VARS SF+ A ++ SSI+RQI LE + KLF+R RGL+LT+ G Sbjct: 8 DMLTTFIHVARSRSFSAVARLQGMAASSITRQIDNLEQVLETKLFFRSTRGLSLTDAGEI 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + L Q EL + +P G LR+A G+ + L E YP I+I+ Sbjct: 68 LFARAQGIINDLVDIQAELAALNGEPQGVLRVACLPTFGRQHIIPMLAELFTRYPKIRIE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + D D D IR+ + ++ S+L +++ T A+P Y++ P ++ E Sbjct: 128 LDQTERLTDPVRDRLDVVIRIGE-LKDSTLYSKRIATQTWIICASPGYIQRHGTPTTLTE 186 Query: 186 LDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD+H L+ D C + + RI + + + ++ V G GIALL Sbjct: 187 LDEHYLLDKHHDPAGICWSRYRSVINFS---DNNRI--FRSDDFETLRMATVSGFGIALL 241 Query: 245 PDYIVKDN 252 P+++V + Sbjct: 242 PNWVVSTD 249 >gi|260551294|ref|ZP_05825495.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260405608|gb|EEW99099.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 293 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 34/310 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L+ F V+AR+ + T+AA + + S+++R+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E +++++ G++RI T G L L EF + Y Sbjct: 61 LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD + + +P +I R L + Y + YL Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQSYLAQNPP 174 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228 +++L +H + + +D + P + CL+ +S Sbjct: 175 IRGLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L+ G+G+A+LP ++ D P L ++E + + T + L++ ++K + Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278 Query: 289 FIFLKARDWK 298 ++ +A ++ Sbjct: 279 YLRKQADKYQ 288 >gi|15833370|ref|NP_312143.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|16131133|ref|NP_417710.1| transcriptional regulator for aaeXAB operon [Escherichia coli str. K-12 substr. MG1655] gi|26249824|ref|NP_755864.1| putative DNA-binding transcriptional regulator [Escherichia coli CFT073] gi|82545527|ref|YP_409474.1| DNA-binding transcriptional regulator [Shigella boydii Sb227] gi|89110005|ref|AP_003785.1| predicted DNA-binding transcriptional regulator, efflux system [Escherichia coli str. K-12 substr. W3110] gi|91212663|ref|YP_542649.1| putative DNA-binding transcriptional regulator [Escherichia coli UTI89] gi|110643478|ref|YP_671208.1| putative DNA-binding transcriptional regulator [Escherichia coli 536] gi|117625527|ref|YP_858850.1| putative DNA-binding transcriptional regulator [Escherichia coli APEC O1] gi|157158690|ref|YP_001464716.1| putative DNA-binding transcriptional regulator [Escherichia coli E24377A] gi|157162721|ref|YP_001460039.1| putative DNA-binding transcriptional regulator [Escherichia coli HS] gi|170018513|ref|YP_001723467.1| putative DNA-binding transcriptional regulator [Escherichia coli ATCC 8739] gi|170082774|ref|YP_001732094.1| DNA-binding transcriptional regulator, efflux system [Escherichia coli str. K-12 substr. DH10B] gi|170684070|ref|YP_001745515.1| putative DNA-binding transcriptional regulator [Escherichia coli SMS-3-5] gi|187776433|ref|ZP_02802645.2| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4196] gi|188025260|ref|ZP_02777166.2| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4113] gi|188496442|ref|ZP_03003712.1| HTH-type transcriptional activator aaeR [Escherichia coli 53638] gi|189010324|ref|ZP_02806394.2| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4076] gi|189401947|ref|ZP_02779232.2| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4401] gi|189403235|ref|ZP_02794106.2| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4486] gi|189404349|ref|ZP_02788787.2| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4501] gi|189404739|ref|ZP_02811136.2| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC869] gi|189406044|ref|ZP_02825963.2| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC508] gi|191168186|ref|ZP_03029982.1| transcriptional activator AaeR [Escherichia coli B7A] gi|191173840|ref|ZP_03035361.1| transcriptional activator AaeR [Escherichia coli F11] gi|193065338|ref|ZP_03046409.1| transcriptional activator AaeR [Escherichia coli E22] gi|193070313|ref|ZP_03051256.1| transcriptional activator AaeR [Escherichia coli E110019] gi|194429124|ref|ZP_03061654.1| transcriptional activator AaeR [Escherichia coli B171] gi|194439171|ref|ZP_03071252.1| transcriptional activator AaeR [Escherichia coli 101-1] gi|208809727|ref|ZP_03252064.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4206] gi|208814039|ref|ZP_03255368.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4045] gi|208820676|ref|ZP_03260996.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4042] gi|209400033|ref|YP_002272706.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4115] gi|209920713|ref|YP_002294797.1| putative DNA-binding transcriptional regulator [Escherichia coli SE11] gi|215488551|ref|YP_002330982.1| putative DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|217327884|ref|ZP_03443967.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. TW14588] gi|218555807|ref|YP_002388720.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218560305|ref|YP_002393218.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|218696942|ref|YP_002404609.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218702008|ref|YP_002409637.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218706857|ref|YP_002414376.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|227887958|ref|ZP_04005763.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|237706010|ref|ZP_04536491.1| transcriptional activator AaeR [Escherichia sp. 3_2_53FAA] gi|238902344|ref|YP_002928140.1| putative DNA-binding transcriptional regulator, efflux system [Escherichia coli BW2952] gi|253771927|ref|YP_003034758.1| DNA-binding transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038403|ref|ZP_04872461.1| transcriptional activator AaeR [Escherichia sp. 1_1_43] gi|254163180|ref|YP_003046288.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|254795186|ref|YP_003080023.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|260846050|ref|YP_003223828.1| putative DNA-binding transcriptional regulator AaeR, efflux system [Escherichia coli O103:H2 str. 12009] gi|260857363|ref|YP_003231254.1| putative DNA-binding transcriptional regulator AaeR, efflux system [Escherichia coli O26:H11 str. 11368] gi|260869987|ref|YP_003236389.1| putative DNA-binding transcriptional regulator AaeR, efflux system [Escherichia coli O111:H- str. 11128] gi|291284611|ref|YP_003501429.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. CB9615] gi|293406846|ref|ZP_06650772.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1412] gi|293412611|ref|ZP_06655334.1| conserved hypothetical protein [Escherichia coli B354] gi|293416667|ref|ZP_06659306.1| DNA-binding transcriptional regulator [Escherichia coli B185] gi|293449568|ref|ZP_06663989.1| DNA-binding transcriptional regulator [Escherichia coli B088] gi|298382587|ref|ZP_06992184.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1302] gi|300817505|ref|ZP_07097721.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300824395|ref|ZP_07104509.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300898010|ref|ZP_07116383.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300904436|ref|ZP_07122282.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300917440|ref|ZP_07134104.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300926014|ref|ZP_07141837.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300929938|ref|ZP_07145378.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|300937357|ref|ZP_07152193.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|300958723|ref|ZP_07170842.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|300979744|ref|ZP_07174694.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|300991028|ref|ZP_07179449.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|301022180|ref|ZP_07186097.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|301047913|ref|ZP_07194960.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|301304293|ref|ZP_07210407.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|301326322|ref|ZP_07219692.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|301645526|ref|ZP_07245460.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|307313058|ref|ZP_07592684.1| transcriptional regulator, LysR family [Escherichia coli W] gi|309793820|ref|ZP_07688246.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|312968426|ref|ZP_07782635.1| HTH-type transcriptional activator aaeR [Escherichia coli 2362-75] gi|312972487|ref|ZP_07786661.1| HTH-type transcriptional activator aaeR [Escherichia coli 1827-70] gi|331643942|ref|ZP_08345073.1| HTH-type transcriptional activator AaeR [Escherichia coli H736] gi|331649035|ref|ZP_08350123.1| HTH-type transcriptional activator AaeR [Escherichia coli M605] gi|331654841|ref|ZP_08355841.1| HTH-type transcriptional activator AaeR [Escherichia coli M718] gi|331664851|ref|ZP_08365756.1| HTH-type transcriptional activator AaeR [Escherichia coli TA143] gi|331670066|ref|ZP_08370911.1| HTH-type transcriptional activator AaeR [Escherichia coli TA271] gi|331674760|ref|ZP_08375519.1| HTH-type transcriptional activator AaeR [Escherichia coli TA280] gi|331679317|ref|ZP_08379989.1| HTH-type transcriptional activator AaeR [Escherichia coli H591] gi|331684884|ref|ZP_08385476.1| HTH-type transcriptional activator AaeR [Escherichia coli H299] gi|332279928|ref|ZP_08392341.1| transcriptional activator AaeR [Shigella sp. D9] gi|54040282|sp|P67663|AAER_ECOL6 RecName: Full=HTH-type transcriptional activator AaeR gi|54040283|sp|P67664|AAER_ECO57 RecName: Full=HTH-type transcriptional activator AaeR gi|54042784|sp|P67662|AAER_ECOLI RecName: Full=HTH-type transcriptional activator AaeR gi|26110252|gb|AAN82438.1|AE016767_198 Hypothetical transcriptional regulator yhcS [Escherichia coli CFT073] gi|606182|gb|AAA58045.1| ORF_o309 [Escherichia coli str. K-12 substr. MG1655] gi|1789639|gb|AAC76275.1| transcriptional regulator for aaeXAB operon [Escherichia coli str. K-12 substr. MG1655] gi|13363589|dbj|BAB37539.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. Sakai] gi|81246938|gb|ABB67646.1| QseA [Shigella boydii Sb227] gi|85676036|dbj|BAE77286.1| predicted DNA-binding transcriptional regulator, efflux system [Escherichia coli str. K12 substr. W3110] gi|91074237|gb|ABE09118.1| putative transcriptional regulator LYSR-type [Escherichia coli UTI89] gi|110345070|gb|ABG71307.1| hypothetical transcriptional regulator YhcS [Escherichia coli 536] gi|115514651|gb|ABJ02726.1| putative DNA-binding transcriptional regulator, efflux system [Escherichia coli APEC O1] gi|157068401|gb|ABV07656.1| transcriptional activator AaeR [Escherichia coli HS] gi|157080720|gb|ABV20428.1| transcriptional activator AaeR [Escherichia coli E24377A] gi|169753441|gb|ACA76140.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739] gi|169890609|gb|ACB04316.1| predicted DNA-binding transcriptional regulator, efflux system [Escherichia coli str. K-12 substr. DH10B] gi|170521788|gb|ACB19966.1| transcriptional activator AaeR [Escherichia coli SMS-3-5] gi|187767173|gb|EDU31017.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4196] gi|188013928|gb|EDU52050.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4113] gi|188491641|gb|EDU66744.1| HTH-type transcriptional activator aaeR [Escherichia coli 53638] gi|189000995|gb|EDU69981.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4076] gi|189358741|gb|EDU77160.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4401] gi|189361858|gb|EDU80277.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4486] gi|189366142|gb|EDU84558.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4501] gi|189373779|gb|EDU92195.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC869] gi|189376862|gb|EDU95278.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC508] gi|190901794|gb|EDV61547.1| transcriptional activator AaeR [Escherichia coli B7A] gi|190905890|gb|EDV65508.1| transcriptional activator AaeR [Escherichia coli F11] gi|192926979|gb|EDV81602.1| transcriptional activator AaeR [Escherichia coli E22] gi|192956372|gb|EDV86832.1| transcriptional activator AaeR [Escherichia coli E110019] gi|194412849|gb|EDX29141.1| transcriptional activator AaeR [Escherichia coli B171] gi|194421867|gb|EDX37873.1| transcriptional activator AaeR [Escherichia coli 101-1] gi|208729528|gb|EDZ79129.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4206] gi|208735316|gb|EDZ84003.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4045] gi|208740799|gb|EDZ88481.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4042] gi|209161433|gb|ACI38866.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. EC4115] gi|209757698|gb|ACI77161.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209757700|gb|ACI77162.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209757702|gb|ACI77163.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209757704|gb|ACI77164.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209757706|gb|ACI77165.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209913972|dbj|BAG79046.1| putative transcriptional regulator [Escherichia coli SE11] gi|215266623|emb|CAS11062.1| predicted DNA-binding transcriptional regulator, efflux system [Escherichia coli O127:H6 str. E2348/69] gi|217320251|gb|EEC28676.1| transcriptional activator AaeR [Escherichia coli O157:H7 str. TW14588] gi|218353674|emb|CAU99915.1| DNA-binding transcriptional regulator, efflux system [Escherichia coli 55989] gi|218362575|emb|CAR00199.1| DNA-binding transcriptional regulator, efflux system [Escherichia coli IAI1] gi|218367074|emb|CAR04845.1| DNA-binding transcriptional regulator, efflux system [Escherichia coli S88] gi|218371994|emb|CAR19850.1| DNA-binding transcriptional regulator, efflux system [Escherichia coli IAI39] gi|218433954|emb|CAR14871.1| DNA-binding transcriptional regulator, efflux system [Escherichia coli UMN026] gi|226840027|gb|EEH72048.1| transcriptional activator AaeR [Escherichia sp. 1_1_43] gi|226899050|gb|EEH85309.1| transcriptional activator AaeR [Escherichia sp. 3_2_53FAA] gi|227835354|gb|EEJ45820.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|238862333|gb|ACR64331.1| predicted DNA-binding transcriptional regulator, efflux system [Escherichia coli BW2952] gi|242378780|emb|CAQ33571.1| quorum sensing transcriptional regulator of LYSR-type [Escherichia coli BL21(DE3)] gi|253322971|gb|ACT27573.1| putative DNA-binding transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975081|gb|ACT40752.1| predicted DNA-binding transcriptional regulator, efflux system [Escherichia coli B str. REL606] gi|253979237|gb|ACT44907.1| predicted DNA-binding transcriptional regulator, efflux system [Escherichia coli BL21(DE3)] gi|254594586|gb|ACT73947.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14359] gi|257756012|dbj|BAI27514.1| predicted DNA-binding transcriptional regulator AaeR, efflux system [Escherichia coli O26:H11 str. 11368] gi|257761197|dbj|BAI32694.1| predicted DNA-binding transcriptional regulator AaeR, efflux system [Escherichia coli O103:H2 str. 12009] gi|257766343|dbj|BAI37838.1| predicted DNA-binding transcriptional regulator AaeR, efflux system [Escherichia coli O111:H- str. 11128] gi|260447729|gb|ACX38151.1| transcriptional regulator, LysR family [Escherichia coli DH1] gi|281180277|dbj|BAI56607.1| putative transcriptional regulator [Escherichia coli SE15] gi|284923259|emb|CBG36353.1| LysR-family transcriptional regulator [Escherichia coli 042] gi|290764484|gb|ADD58445.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. CB9615] gi|291322658|gb|EFE62087.1| DNA-binding transcriptional regulator [Escherichia coli B088] gi|291426852|gb|EFE99884.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1412] gi|291432023|gb|EFF05006.1| DNA-binding transcriptional regulator [Escherichia coli B185] gi|291469382|gb|EFF11873.1| conserved hypothetical protein [Escherichia coli B354] gi|294490016|gb|ADE88772.1| transcriptional activator AaeR [Escherichia coli IHE3034] gi|298277727|gb|EFI19243.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1302] gi|300300256|gb|EFJ56641.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|300307962|gb|EFJ62482.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|300314633|gb|EFJ64417.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|300358281|gb|EFJ74151.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300397647|gb|EFJ81185.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|300403598|gb|EFJ87136.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300406949|gb|EFJ90487.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|300415323|gb|EFJ98633.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300417958|gb|EFK01269.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300457576|gb|EFK21069.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|300462161|gb|EFK25654.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|300523124|gb|EFK44193.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300529803|gb|EFK50865.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300840419|gb|EFK68179.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|300846966|gb|EFK74726.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|301076210|gb|EFK91016.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|306906969|gb|EFN37477.1| transcriptional regulator, LysR family [Escherichia coli W] gi|307555329|gb|ADN48104.1| transcriptional regulator [Escherichia coli ABU 83972] gi|308122777|gb|EFO60039.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|309703664|emb|CBJ03005.1| LysR-family transcriptional regulator [Escherichia coli ETEC H10407] gi|310334864|gb|EFQ01069.1| HTH-type transcriptional activator aaeR [Escherichia coli 1827-70] gi|312286644|gb|EFR14555.1| HTH-type transcriptional activator aaeR [Escherichia coli 2362-75] gi|315062543|gb|ADT76870.1| predicted DNA-binding transcriptional regulator, efflux system [Escherichia coli W] gi|315137828|dbj|BAJ44987.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|315257168|gb|EFU37136.1| LysR substrate binding domain protein [Escherichia coli MS 85-1] gi|315289017|gb|EFU48415.1| LysR substrate binding domain protein [Escherichia coli MS 110-3] gi|315294783|gb|EFU54126.1| LysR substrate binding domain protein [Escherichia coli MS 153-1] gi|315300894|gb|EFU60114.1| LysR substrate binding domain protein [Escherichia coli MS 16-3] gi|315617054|gb|EFU97664.1| HTH-type transcriptional activator aaeR [Escherichia coli 3431] gi|323154453|gb|EFZ40654.1| HTH-type transcriptional activator aaeR [Escherichia coli EPECa14] gi|323162930|gb|EFZ48765.1| HTH-type transcriptional activator aaeR [Escherichia coli E128010] gi|323173499|gb|EFZ59128.1| HTH-type transcriptional activator aaeR [Escherichia coli LT-68] gi|323178587|gb|EFZ64163.1| HTH-type transcriptional activator aaeR [Escherichia coli 1180] gi|323189144|gb|EFZ74428.1| HTH-type transcriptional activator aaeR [Escherichia coli RN587/1] gi|323376869|gb|ADX49137.1| transcriptional regulator, LysR family [Escherichia coli KO11] gi|323936219|gb|EGB32512.1| LysR substrate binding domain-containing protein [Escherichia coli E1520] gi|323941663|gb|EGB37842.1| LysR substrate binding domain-containing protein [Escherichia coli E482] gi|323946909|gb|EGB42925.1| LysR substrate binding domain-containing protein [Escherichia coli H120] gi|323951245|gb|EGB47120.1| LysR substrate binding domain-containing protein [Escherichia coli H252] gi|323957616|gb|EGB53330.1| LysR substrate binding domain-containing protein [Escherichia coli H263] gi|323961108|gb|EGB56722.1| LysR substrate binding domain-containing protein [Escherichia coli H489] gi|323966422|gb|EGB61856.1| LysR substrate binding domain-containing protein [Escherichia coli M863] gi|323970341|gb|EGB65611.1| LysR substrate binding domain-containing protein [Escherichia coli TA007] gi|323979046|gb|EGB74124.1| LysR substrate binding domain-containing protein [Escherichia coli TW10509] gi|324009105|gb|EGB78324.1| LysR substrate binding domain protein [Escherichia coli MS 57-2] gi|324015838|gb|EGB85057.1| LysR substrate binding domain protein [Escherichia coli MS 60-1] gi|324018384|gb|EGB87603.1| LysR substrate binding domain protein [Escherichia coli MS 117-3] gi|324119602|gb|EGC13484.1| LysR substrate binding domain-containing protein [Escherichia coli E1167] gi|327251336|gb|EGE63025.1| HTH-type transcriptional activator aaeR [Escherichia coli STEC_7v] gi|331037413|gb|EGI09637.1| HTH-type transcriptional activator AaeR [Escherichia coli H736] gi|331042782|gb|EGI14924.1| HTH-type transcriptional activator AaeR [Escherichia coli M605] gi|331048223|gb|EGI20300.1| HTH-type transcriptional activator AaeR [Escherichia coli M718] gi|331058099|gb|EGI30081.1| HTH-type transcriptional activator AaeR [Escherichia coli TA143] gi|331062979|gb|EGI34893.1| HTH-type transcriptional activator AaeR [Escherichia coli TA271] gi|331068199|gb|EGI39595.1| HTH-type transcriptional activator AaeR [Escherichia coli TA280] gi|331073382|gb|EGI44705.1| HTH-type transcriptional activator AaeR [Escherichia coli H591] gi|331078499|gb|EGI49705.1| HTH-type transcriptional activator AaeR [Escherichia coli H299] gi|332090977|gb|EGI96068.1| HTH-type transcriptional activator aaeR [Shigella boydii 3594-74] gi|332102280|gb|EGJ05626.1| transcriptional activator AaeR [Shigella sp. D9] Length = 309 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240 >gi|15676212|ref|NP_273344.1| putative transcriptional regulator [Neisseria meningitidis MC58] gi|7225514|gb|AAF40741.1| putative transcriptional regulator [Neisseria meningitidis MC58] gi|316985229|gb|EFV64181.1| bacterial regulatory helix-turn-helix , lysR family protein [Neisseria meningitidis H44/76] gi|325135094|gb|EGC57722.1| transcriptional regulator, LysR family [Neisseria meningitidis M13399] gi|325141126|gb|EGC63629.1| transcriptional regulator, LysR family [Neisseria meningitidis CU385] gi|325199493|gb|ADY94948.1| transcriptional regulator, LysR family [Neisseria meningitidis H44/76] Length = 303 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|91210623|ref|YP_540609.1| transcriptional regulator YcjZ [Escherichia coli UTI89] gi|110641564|ref|YP_669294.1| LysR family transcriptional regulator [Escherichia coli 536] gi|117623582|ref|YP_852495.1| transcriptional regulator YcjZ [Escherichia coli APEC O1] gi|191171072|ref|ZP_03032623.1| transcriptional regulator, LysR family [Escherichia coli F11] gi|218558316|ref|YP_002391229.1| nucleic acid-binding regulator [Escherichia coli S88] gi|237705359|ref|ZP_04535840.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA] gi|300972020|ref|ZP_07171780.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|306813646|ref|ZP_07447827.1| LysR family transcriptional regulator [Escherichia coli NC101] gi|91072197|gb|ABE07078.1| hypothetical transcriptional regulator YcjZ [Escherichia coli UTI89] gi|110343156|gb|ABG69393.1| hypothetical transcriptional regulator YcjZ (LysR family) [Escherichia coli 536] gi|115512706|gb|ABJ00781.1| hypothetical transcriptional regulator YcjZ [Escherichia coli APEC O1] gi|190908804|gb|EDV68392.1| transcriptional regulator, LysR family [Escherichia coli F11] gi|218365085|emb|CAR02791.1| putative nucleic acid-binding regulator [Escherichia coli S88] gi|226900116|gb|EEH86375.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA] gi|294492702|gb|ADE91458.1| transcriptional regulator, LysR family [Escherichia coli IHE3034] gi|300309242|gb|EFJ63762.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|305852920|gb|EFM53365.1| LysR family transcriptional regulator [Escherichia coli NC101] gi|307627097|gb|ADN71401.1| LysR family transcriptional regulator [Escherichia coli UM146] gi|315289172|gb|EFU48570.1| LysR substrate binding domain protein [Escherichia coli MS 110-3] gi|323949068|gb|EGB44960.1| LysR substrate binding domain-containing protein [Escherichia coli H252] gi|323956890|gb|EGB52622.1| LysR substrate binding domain-containing protein [Escherichia coli H263] gi|324011333|gb|EGB80552.1| LysR substrate binding domain protein [Escherichia coli MS 60-1] Length = 299 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 128/287 (44%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D + + L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKGKKLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|91223248|ref|ZP_01258514.1| transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] gi|254228760|ref|ZP_04922183.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|262396520|ref|YP_003288373.1| transcriptional regulator LysR family [Vibrio sp. Ex25] gi|269965374|ref|ZP_06179494.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91192061|gb|EAS78324.1| transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] gi|151938707|gb|EDN57542.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|262340114|gb|ACY53908.1| transcriptional regulator LysR family [Vibrio sp. Ex25] gi|269830020|gb|EEZ84249.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 299 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 18/288 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE +L+ S +S++++ LE E+G +L YR R LTLTE G Sbjct: 4 DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPCISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D D IR + SSLI R ++ A+P Y+ +P+ + Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LADSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182 Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L HN + + ED N++ V C ++ ++ + + G Sbjct: 183 LTTHNCLQYAYQTTGATDWEFKGEDGNYIVKVS--------GCFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA +P +V N LV I +++ +Y YP + K+K Sbjct: 235 GIAYVPRCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282 >gi|319764746|ref|YP_004128683.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|330826962|ref|YP_004390265.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317119307|gb|ADV01796.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] gi|329312334|gb|AEB86749.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 310 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 16/282 (5%) Query: 6 DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F VA GS T AA+ ++ + + R++ LE +G+KL R R +TLT + Sbjct: 2 DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRITLTHE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + VK +G LR+ G+ + + F L+PD+ Sbjct: 62 GSAFLDDCQRLLADVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFRDLHPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L ++ +D++ + DCA+R+ + SSL+ ++ A P YL+ P+ Sbjct: 122 TISLNLSDRVVDMAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPMH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCV 236 EL +H+ +T L + W V G + + L + +C+ Sbjct: 181 PAELAQHDCLT---LSSDASQTRGWAFRVPVAGGGTEVVHFKPGGPLDCSDGQVLHDWCL 237 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G GIA + V+ + LV ++E+ P +Y +P+ Sbjct: 238 GGWGIAWRSTWEVESEIASGRLVAVLEEFAAPPNGIYVVFPQ 279 >gi|261342694|ref|ZP_05970552.1| HTH-type transcriptional activator AaeR [Enterobacter cancerogenus ATCC 35316] gi|288315346|gb|EFC54284.1| HTH-type transcriptional activator AaeR [Enterobacter cancerogenus ATCC 35316] Length = 302 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 8/240 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTADMLKEYPGLTVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L ++ M A+ YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPADLT 179 Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E L+T P+G N ++I ++ V G+GIA +P Sbjct: 180 NHSWLEYSVRPDNEFELIAPEGLSTKLLPVGR-----FVTNDPMTISRWLVAGAGIAYVP 234 >gi|167033681|ref|YP_001668912.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166860169|gb|ABY98576.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 303 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 15/295 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A++GSFT AA L L++S++ + I+ LE + ++L R R L+LT++G Sbjct: 11 AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGLVAFER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L+ + + + KP+G LR+ + LGQ + L ++L +P+++ + Sbjct: 71 WRQILDDLDEVESTMAQRRGKPTGTLRLTAPLSLGQRHVLPILDQYLKQWPELRADIRFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ P + S L+ R + A+P YL+ P +L H Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQVPGDLYGH 190 Query: 190 NLITF--GD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I F G+ +P L + P L ++S +++ G G+ LP Sbjct: 191 DKIAFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGLIHLPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 YI D+ LV ++ P+ + YP + ++ R FI L W+ Sbjct: 245 YITGDDLRAGTLVEVLHGYRPPADPIRIVYPSKRHLSPRV---RGFIDLLVASWE 296 >gi|213969571|ref|ZP_03397707.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|301383346|ref|ZP_07231764.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302059382|ref|ZP_07250923.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] gi|302134511|ref|ZP_07260501.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925667|gb|EEB59226.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 302 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R R L LTE+G H Sbjct: 10 IETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGVAYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + +LE + L +P+G+LRI G+ + + +F + ++ ++ Sbjct: 70 AVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRPRVT 129 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P I + + R L T + AAP YL+ P + ++L Sbjct: 130 FTDRFVDIIEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTFEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 +H I FG WL ++ E R + L + + + + GIA L Sbjct: 190 ARHACILFGR---GDGSTSPWLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGIAQL 246 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++KD LV I+ + T ++ +P ++ K++A Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQAL 291 >gi|169797348|ref|YP_001715141.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213155837|ref|YP_002317882.1| transcriptional regulator, HTH-type [Acinetobacter baumannii AB0057] gi|215484788|ref|YP_002327023.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB307-0294] gi|301346549|ref|ZP_07227290.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB056] gi|301512876|ref|ZP_07238113.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB058] gi|301596054|ref|ZP_07241062.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB059] gi|332851895|ref|ZP_08433798.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332867954|ref|ZP_08437942.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169150275|emb|CAM88172.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|193076230|gb|ABO10858.2| putative transcriptional regulator (LysR family) [Acinetobacter baumannii ATCC 17978] gi|213054997|gb|ACJ39899.1| transcriptional regulator, HTH-type [Acinetobacter baumannii AB0057] gi|213988884|gb|ACJ59183.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB307-0294] gi|332729680|gb|EGJ61016.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332733655|gb|EGJ64814.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 298 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 14/292 (4%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ FY+ VA+ SF+ A QL L +S+++ I LET G++LF+R R ++LT+ Sbjct: 2 DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + E + +Q G L+I+ + ++ L +F YPDI Sbjct: 62 GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + D+ DC +R+ + + +SSLI R + + M A+ YL++ P Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASTQYLQDYGIPEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 + +L++H LI + + + +F + G + S L VN+ + + G GI Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQG------GTVMMDSALSVNNTEAYIAAACAGLGI 234 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y V+D LV ++ PS + YP +L+ F N++ Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286 >gi|241762436|ref|ZP_04760514.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373030|gb|EER62688.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 304 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 6/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VA+ SFT AA +L +SQS++S + LE + + L R R +T T G Sbjct: 9 NDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAGEY 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + ++E + E +P+G +RI +T D +++ +K FL YP ++I+ Sbjct: 69 LIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVKIE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ D K +DI + D AIRL + + I +P Y +N P + Q+ Sbjct: 129 LVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETPQD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H IT +P + W R I L NS I C+ G G+A + Sbjct: 189 LLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLAHM 246 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P+ + + + L+ ++ D + C+P +N F Sbjct: 247 PEIMAQKYIEEGRLIPVLGDWCPYWSGYHLCFPHHYENIRPFSLF 291 >gi|28868784|ref|NP_791403.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852023|gb|AAO55098.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VAR SFT AA +L ++ S++S + LE +G++L R R + TE G + Sbjct: 7 NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGEQ 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +L+ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + AP Y +N PL Q+ Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFENHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +P + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289 >gi|148547762|ref|YP_001267864.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148511820|gb|ABQ78680.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 303 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 15/295 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A++GSFT AA L L++S++ + I+ LE + ++L R R L+LT++G Sbjct: 11 AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGLVAFER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L+ + + KP+G LR+ + LGQ + L ++L +P+++ + Sbjct: 71 WRQILDDLDEVESTMALRRGKPTGTLRLTAPLSLGQRHVLPILDQYLKQWPELRADIRFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ P + S L+ R + A+P YL+ P +L H Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQMPGDLYGH 190 Query: 190 NLITF--GD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I F G+ +P L + P L ++S +++ G G+ LP Sbjct: 191 DKIAFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGLIHLPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 YI D+ NLV ++ P+ + YP + ++ R FI L W+ Sbjct: 245 YITGDDLRAGNLVEVLHAYRPPADPIRIVYPSKRHLSPRV---RGFIDLLVASWE 296 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074653|gb|ADJ64052.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 9/291 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F VA SF+ AA QL L +S+S I LE +G +L R R + LT G Sbjct: 5 DTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTADGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + E+ + E+ + + + SG+LR+ + + + ++ L FL +P ++I+ Sbjct: 65 FYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQLEIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC +R + SSL+ R + + A+P YL+ P ++++ Sbjct: 125 LSASDRRVDLVAEGFDCVLRT-GTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQTLED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H L+ + ++ + W R + P + VNS + C+ G G+ L Sbjct: 184 LAQHRLVHYRQVLGGRSPGWEWFDGQQTRSL--PMAGSITVNSTETYYAACLAGLGLIQL 241 Query: 245 PDYIVK-----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + D ++V ++ V Y +L F +++ Sbjct: 242 PLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWL 292 >gi|260427232|ref|ZP_05781211.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260421724|gb|EEX14975.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 298 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 18/261 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F A +GSFT AAE+L +S S+ ++ LE +G++L R R + +T G Sbjct: 5 DGLRAFVATAETGSFTGAAERLGISNRLTSKYVAELERRLGVRLLQRTTRKVGVTASGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +L+ E+ E +G LR++ + G+ ++ L F +P++ I Sbjct: 65 LLARAPALLDELDEMLAEVTEDGRGFTGTLRVSAPVTFGEKYVKDLLSRFAAPHPELTID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D++ D D R+ +P SSL +RKL I A+P YL P + ++ Sbjct: 125 LRLSDAYVDLAADGIDLGFRIGEPAL-SSLKRRKLGAIRSRLVASPDYLARHLAPATPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 L H C+ D N W D R+ VNS V G Sbjct: 184 LASH----------VCIVDTNRADPARWRFLRDGETTTVRVPTRFMVNSAQVARDLAVAG 233 Query: 239 SGIALLPDYIVKDNPNLVRIM 259 G+A P +++ D+ R++ Sbjct: 234 DGVAYCPVFVLGDDIKAGRLV 254 >gi|254671545|emb|CBA09168.1| Transcriptional regulator [Neisseria meningitidis alpha153] gi|325128962|gb|EGC51814.1| transcriptional regulator, LysR family [Neisseria meningitidis N1568] gi|325131016|gb|EGC53743.1| transcriptional regulator, LysR family [Neisseria meningitidis OX99.30304] gi|325207318|gb|ADZ02770.1| transcriptional regulator, LysR family [Neisseria meningitidis NZ-05/33] Length = 303 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|254252581|ref|ZP_04945899.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124895190|gb|EAY69070.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 325 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 18 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 77 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 78 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPDVHVEL 137 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+P Y+ PL +L Sbjct: 138 TLAQRMPDLLDEGYDVAIVVGRELPDSGLVSQRLGESYSVLCASPGYVDAHGMPLRSADL 197 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 +H + G + P D W T+ P G+ + +VN ++ G GI Sbjct: 198 AQH--VCLGMVAPGFHYD-EW--TLSGPNGDETVPIAAPPFRVNVAEALAVAVREGMGIG 252 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + +VR+M + + +Y YP K++ + +F+ Sbjct: 253 GLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 303 >gi|114327474|ref|YP_744631.1| LysR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315648|gb|ABI61708.1| transcriptional regulators, LysR family [Granulibacter bethesdensis CGDNIH1] Length = 316 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 136/295 (46%), Gaps = 20/295 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V GSF+ AA + S+ISR I+ LE +G+ LF+R R + LTE G + Sbjct: 7 MQMFVRVVEFGSFSRAAGVTGVHISAISRGIASLEENLGVDLFHRSTRRVHLTEPGRIFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V ++E + P G LR+A + + ++ EFL YPDI++ + Sbjct: 67 QHARSVLREVEEARAAASAQQGHPQGLLRLALPDAFARLHIVPHMPEFLATYPDIRLDMS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ AD AIR+ P+ SSLI RKL A+P YL + ++L Sbjct: 127 FSDVRVDLIATGADAAIRI-GPLLDSSLIARKLAPHRRVICASPDYLDHRPAIRHPEDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI-GE----PRISCLQVNSYLSIMQYCVLGSGIA 242 +HN + + NW PI GE P ++ + + + G GI Sbjct: 186 QHNCLIY-----SLQPSGNWF--FHHPISGEEVAVPVRGSIRADDSEPLRGCALSGLGIV 238 Query: 243 LLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP ++V ++ L ++ D + T ++ YP + K++AF +F+ Sbjct: 239 LLPTWLVGNDLRSGRLSPVLPDWNAMIATQPSGIFGLYPPHRQVPPKIRAFLDFL 293 >gi|288933957|ref|YP_003438016.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288888686|gb|ADC57004.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 305 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 11/282 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF V SG+F AA LH+++S++ + I+ LE +G+ LF R R LT Sbjct: 1 MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + E ++ + LQ + G+LRI+ + GQ + L YP Sbjct: 61 EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPLLFRLSQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L ++ +++ + D A+R+ + SL R L M AA YL+ P Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAADYLRRQPAP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237 +I L +H T G L ++ + D GE R S L + + +I Sbjct: 181 QTIAGLSEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTGLVQDDFAAIAAAVQQ 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 G GIA LPD++V + L +++ F ++ +PE Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEG 277 >gi|255262026|ref|ZP_05341368.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] gi|255104361|gb|EET47035.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] Length = 298 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 9/297 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+ R F A GS + AA L +Q +I RQ++ LE +G+ LF R RG+ LT Sbjct: 6 IDFDWNHARAFLATAEEGSLSAAARALKTTQPTIGRQVTALEEHLGLVLFERVGRGVELT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + + + S G +RI + + L L++ + P Sbjct: 66 PSGRQLATHIAAMRDAATAASLAASGQSQTIDGTVRITASDVMAAYHLPAFLEQLATVAP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I++I + D+ AD A+R +P Q LI R + H YA+ YL +P Sbjct: 126 RLNIEIIASDDLQDLQRREADIALRHVRPDQ-PELIARLVCDASAHFYASQPYLDKHGDP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +I F D +P+ ++ N + RP Q S L + Q G G Sbjct: 185 DDASGITTQKIIGFSD-VPRMVDYLNMIGVSLRPDQFHN----QSTSGLVVWQMAQRGLG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 + ++ D + + PN+ R +++V + ++ ++ L + +++ + + FLK R Sbjct: 240 LCIMGDDVAQQTPNMRRTLKNV-SVTYPIWLTTHRELHTSRRIRLVFDMLDQFLKPR 295 >gi|254464566|ref|ZP_05077977.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] gi|206685474|gb|EDZ45956.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] Length = 292 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 16/286 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW+ +R F A +GS + AA +L L+Q ++SRQ++ LE E+G+ LF R R L LTE G Sbjct: 5 DWNHIRAFLATAETGSLSAAARRLGLTQPTLSRQVAALEAELGVLLFERPGRALALTEAG 64 Query: 64 SKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +L R E + L T Q S++ G +RI + + ++L L + P Sbjct: 65 HELLIHSRKMGEAANSL-TLAATGQAQSIE--GTVRITASDVMSAHVLPPVLHQLRQRAP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I ++ N D+ AD AIR +P Q LI R + H YAAP YL+ P Sbjct: 122 RLTIDVVAANDIRDLMRREADIAIRHVRPEQ-PELIARLVQEATAHFYAAPSYLERRGRP 180 Query: 181 LSIQELDKHNLITFGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 + L H+ + F D+ M T D ++ S L+ + G Sbjct: 181 SAPAGLADHDFVGFADVDRSIAFMAPLGIHLTADN-------FRIRSTSGLASWELVKQG 233 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G+ + D + P + R++ + +F V+ L + +++ Sbjct: 234 FGVCPMMDDVAAVTPGVERLLPGMEPLTFPVWLTTHRELHTSRRIR 279 >gi|167835170|ref|ZP_02462053.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 320 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + + Y D+ +++ Sbjct: 66 YERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL P +I + Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPTGMKSSSLVARQIATAHIVLVASPDYLAKHGTPATIAD 185 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241 L H+ I LI + D + V P + VN +L ++ VL G+GI Sbjct: 186 LQHHSFIRREPNETLIDAAISDVAAASRV------PLSGNVIVN-HLEGLRVAVLSGAGI 238 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ALL +V ++ LV ++ D + P +Y Y + K+++F +F+ Sbjct: 239 ALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 291 >gi|15803777|ref|NP_289811.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 EDL933] gi|25319769|pir||G85988 probable transcription regulator LYSR-type yhcS [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517867|gb|AAG58371.1|AE005552_1 quorum sensing Escherichia coli regulator A [Escherichia coli O157:H7 str. EDL933] Length = 309 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVXEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240 >gi|331017360|gb|EGH97416.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 302 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R R L LTE+G H Sbjct: 10 IETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGVAYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + +LE + L +P+G+LRI G+ + + +F + ++ ++ Sbjct: 70 AVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRPRVT 129 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P I + + R L T + AAP YL+ P + ++L Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTFEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 +H I FG WL ++ E R + L + + + + GIA L Sbjct: 190 ARHACILFGR---GDGSTSPWLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGIAQL 246 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++KD LV I+ + T ++ +P ++ K++A Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQAL 291 >gi|222102786|ref|YP_002539825.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221739387|gb|ACM40120.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 296 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 20/279 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V + SFT A + LS+ +IS+ I LE VG+ L R RG+ +E GS+ + Sbjct: 7 LKVFCAVIEARSFTKAGNNIGLSRPAISKNIRELEAHVGVTLVNRTTRGVMPSEAGSRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ SE+ + E +S + G LR+ + LG +L+ L +F P+ + L Sbjct: 67 QIVSELLWRHEQADEVASQSGAELRGTLRVTMPVTLGLHLILPVLPQFNEENPECSLDLC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + + D A+R + ++ S+L+ R + ++ AAP Y++ + S ++L+ Sbjct: 127 LSEEKQQLVEGNFDVAVRASQRLEDSTLMSRCIGSVTYAICAAPSYVQKSQSLKSPKDLE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCVLGSG 240 H L+ G I D W + GE SC + N +I V G G Sbjct: 187 DHQLVVHGANIG----DQKWRFSAQ---GE---SCYVSVRAQHKSNCSEAIKSLTVAGMG 236 Query: 241 IALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEA 276 IA +P Y+ ++ LV ++ D T+Y YP++ Sbjct: 237 IARIPRPYVSRELAEGRLVELLSDWTMEPLTIYAMYPQS 275 >gi|300691651|ref|YP_003752646.1| transcriptional regulator, lysR family [Ralstonia solanacearum PSI07] gi|299078711|emb|CBJ51370.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 309 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + +FL +PD+ I L Sbjct: 66 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + SSL+ +L AAP YL+ P ++ L Sbjct: 126 DLGDRIVDLVNEGFDCAVRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEHL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 HN + FG W+ D ++ ++ + ++C+ G G+A Sbjct: 185 ASHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289 >gi|241764124|ref|ZP_04762160.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241366530|gb|EER61023.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 300 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 24/284 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR SFT AA QL +SQS++S I LE +G++L R R ++ T G Sbjct: 5 NYNDLLAFMAVAREKSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSPTVAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + ++E + E S KP+G +RI TT + +L L + L YP I+ Sbjct: 65 ERLMQNVAPRFQEIEAELTAIGELSDKPAGTVRITTTEHAARTVLWPKLAKLLPEYPGIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I++++ +I + D +RL + + R + + A+P YL P + Sbjct: 125 VEMIVESRLAEIVTERYDMGVRLGDTLTGDTTAVRISADMPVAIVASPAYLAQYPAPKTP 184 Query: 184 QELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQ 233 Q+L H+ L++ G L + W + G+ R++ L N + I+ Sbjct: 185 QDLIHHSCINLRLMSRGGL-------YAW----ELKKGKQRVNAHVEGQLVFNEPMQILD 233 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVI--TPSFTVY-FCYP 274 + G G+ + + + + R+ + ++ P+F Y CYP Sbjct: 234 AALAGFGLGYVLEDMARPYVTQGRLRQVLMDWCPAFPGYHICYP 277 >gi|156310355|ref|XP_001617728.1| hypothetical protein NEMVEDRAFT_v1g156874 [Nematostella vectensis] gi|156195522|gb|EDO25628.1| predicted protein [Nematostella vectensis] Length = 305 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 2/192 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA +GSF+ A +L ++ SS+SR I LE ++ + LF R R + LTE+G Sbjct: 3 DAMRVFVHVADTGSFSKTAARLQIAPSSVSRTIDQLEKQLQVTLFKRSTRQVVLTEKGQL 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R + + +Q+ SG+LRI+ G+ ++ + FL YPD+ + Sbjct: 63 FLRGALPLLEEANALVASVQDRERVVSGELRISVFESFGRLVVSPLIATFLRKYPDVTVT 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LDN D++ D D AIR+ P+ S L R+L+ A+P YL P +E Sbjct: 123 LELDNGLTDLTGDNVDLAIRIGLPM-DSGLRYRRLLPNRTRICASPQYLAAQGTPTVPEE 181 Query: 186 LDKHN-LITFGD 196 L +HN L+ GD Sbjct: 182 LVQHNCLLLRGD 193 >gi|310819493|ref|YP_003951851.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309392565|gb|ADO70024.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca DW4/3-1] Length = 301 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 12/299 (4%) Query: 1 MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD + V V +G+F AAE L L+QS +SR ++ LE VG++LF R AR + Sbjct: 1 MAFDGKLLSGMGVMAAVVEAGNFVRAAEALGLTQSGVSRAVARLEQRVGVRLFDRTARAV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT++G + + + +E ++ G LR+ G +L L EFL Sbjct: 61 SLTDEGRRFYEEVAPHLAGIEDAATAATGAAATVRGHLRVNADAAFGHYVLAPRLGEFLA 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 L+P++ +L++ ++ D+ + D A+R +P + SSLI R++ + A+P Y+ Sbjct: 121 LHPELSFELVVRDRIGDLVAEGLDMAVRFGEP-EPSSLICRQIGRSQVLTCASPEYVARR 179 Query: 178 REPLSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQY 234 P EL + H I + F+W R + + + L VN S++ Sbjct: 180 GRPKHPSELARGAHECILVRNTW--TGRHFDWEFHQGREVVQVDVQGRLMVNDSGSLISA 237 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G+ ++ V+ D+ LV+++ + V+ + K++AF +F+ Sbjct: 238 MLSGHGVGQPFEFSVRELIDSGRLVKLLPAWSDERYPVHVYHRSREFPAAKVRAFIDFL 296 >gi|145300477|ref|YP_001143318.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853249|gb|ABO91570.1| transcriptional regulator LysR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 289 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 7/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F +AR G+ AA L + Q+++ R+I+ LE +G KLF R + L+ Sbjct: 2 INWDDARFFLALARQGTLRGAAGVLGVDQATVGRRITALEQSLGSKLFIRTPKLYDLSPL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + S + ++ + + G++RIATT L Q + L +P I Sbjct: 62 GETMLADASAMEQAIQAIERKASAGDQSLCGEVRIATTDTLAQAFVLPALTLLRERHPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L DI+ AD AIR +P + L+ ++L TI M YA+ YL P Sbjct: 122 RLSLQTAVNVSDIACLEADLAIRGMRP-DNDELVIKRLTTIEMGLYASHDYLARHGTPKC 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H L+ F K + +W + P+ EP + LQ N+ L ++ G GIA Sbjct: 181 GLGLSQHALLLFA----KELVSRHWHSLCGEPLHEPNV-VLQCNAQLLLLAAARQGLGIA 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 LL ++ LVR++ + P +P L+ +++A Sbjct: 236 LLSTFLADKETELVRVLPALSDPVDIWLVLHPN-LQKASRVRA 277 >gi|154252816|ref|YP_001413640.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156766|gb|ABS63983.1| transcriptional regulator, LysR family [Parvibaculum lavamentivorans DS-1] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 134/292 (45%), Gaps = 12/292 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L+ F VA +G + AA +L +S+S +SR++ +E E+G++L R RG LTE Sbjct: 1 MDIEDLQTFVAVADAGGISAAARRLSVSKSIVSRRLFRIEAELGVQLLARTTRGAALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + +++T + L + SG+LR+A + LG L E L P + Sbjct: 61 GLTFRDHAARATAEIDTARDTLLPAGAL-SGRLRVAIPLSLGPTHFAPVLAEMALRNPQL 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I ++ +D+ + DCAIR+ +Q S+L+ +++ I A+P Y+K P Sbjct: 120 HIHTSYSDRFVDLIAEGFDCAIRVGY-LQDSNLVAKRVGPISGKLVASPDYIKAHGAPEK 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++++ H + G + M D + + TV +P G + ++ + G GIA Sbjct: 179 LEQIADHQALMQGMETWQFM-DGDKIVTV-QPQGR-----FKADNATVLAAAAAAGLGIA 231 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LPD + D + LV +M PS Y P K++ + Sbjct: 232 WLPDCVTHDYVASGALVPVMMRHPVPSAGTYVVRPPGQHPARKVRVLTEMLI 283 >gi|27377385|ref|NP_768914.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350529|dbj|BAC47539.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 296 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 142/295 (48%), Gaps = 20/295 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D ++LR F VA +G + AA +L +S+S +SR++ LE+E+G++L R RG LTE G Sbjct: 7 DIEELRTFVEVADAGGVSPAALRLGVSKSIVSRRLLRLESELGVQLLARTTRGAALTEAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLY 119 VT Y T+I++ + ++ P+ G+LR+A + G N + E + Sbjct: 67 -----VTFRDYAARVCTEIDVAKETILPAGELRGRLRVAVPLSFGSNYFAPMMAEMARRH 121 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P +QI ++ +D+ DCAIR+ +Q S+LI +++ I+ A+P Y+K Sbjct: 122 PQLQIHTCYSDQFVDLIAGGYDCAIRIGY-LQDSNLIAKRVGPIYGKFVASPGYVKEHGS 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P + +EL H + G + M D + + TV RP G + ++ ++ G Sbjct: 181 PETPEELVAHQALMQGTETWQLM-DGDKIITV-RPQGR-----FKADNGTALAAAAAAGL 233 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA LPD++ + + LV +M P Y P K++ + Sbjct: 234 GIAYLPDFLTNELLASGALVSVMTRHPPPPAGAYVIRPPGQHPARKIRVLTELLI 288 >gi|320173086|gb|EFW48305.1| LysR family transcriptional regulator YhjC [Shigella dysenteriae CDC 74-1112] Length = 299 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 IQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + EV L Q+ + SG LRI + +NLL L EFL L+P I+++L Sbjct: 67 QRAKEVLSNLNELDGLFQQDATSISGILRIDIPPGIAKNLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|296136394|ref|YP_003643636.1| transcriptional regulator, LysR family [Thiomonas intermedia K12] gi|295796516|gb|ADG31306.1| transcriptional regulator, LysR family [Thiomonas intermedia K12] Length = 295 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 11/291 (3%) Query: 6 DKLRVFYVV---ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ V A GS T AA L S ++ R ++ LE +GI+LF R R L+LTE+ Sbjct: 2 DKLKAMRTVVNIADEGSLTAAATALGSSPPAVVRTLAALEAHLGIRLFNRTTRRLSLTEE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ +E + L +++PSG+L I + GQ + + F+ Y + Sbjct: 62 GQHYVESCRQLLAAIEDAESALTADAIEPSGQLTITAPVLYGQMYVAPAVTRFVQNYDKV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L+L ++ +++ ++ D IR+ ++ SSLI + L ++ A+P YL P Sbjct: 122 RVNLLLLDRMVNLLEEHIDVGIRIGA-LEDSSLIAQPLCSVRRIVVASPDYLARHGLPNH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL K N + F + + D+P P L+ N ++ C+ G G Sbjct: 181 PMELLKVNCVRFSN----GAGPWWTFQENDKPFTVPVTGNLKFNYVTPALEACLAGLGFG 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + Y V + + +L ++E P + YP A ++K F +I Sbjct: 237 MFFSYQVSNQLAHNHLQVVLEPFELPQRPISVVYPHARLLPARIKFFIEWI 287 >gi|121635577|ref|YP_975822.1| LysR family transcriptional regulator [Neisseria meningitidis FAM18] gi|120867283|emb|CAM11054.1| probable LysR-family transcriptional regulator [Neisseria meningitidis FAM18] gi|325145229|gb|EGC67509.1| transcriptional regulator, LysR family [Neisseria meningitidis M01-240013] gi|325199012|gb|ADY94468.1| transcriptional regulator, LysR family [Neisseria meningitidis G2136] Length = 303 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|152986112|ref|YP_001349531.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961270|gb|ABR83295.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 304 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 20/309 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + ++ F V GS + AAE++ LS+S IS+++S LE +G++L YR R + T Sbjct: 1 MSLRLEDIQAFLNVVELGSISAAAERMSLSKSVISKRVSDLERHLGVRLLYRSTRNVEPT 60 Query: 61 EQGSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E G ++ L + L+E+ + G+LR+ + G L + EF+ Sbjct: 61 EAGGFFYKSAKASVQDLNNAAESVALRENDL--CGELRVMAPMSFGTLWLGPLVMEFMAR 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 P +++ L LD++ ID + D AIR+ + +Q SSLI R+L T +P YL+ Sbjct: 119 NPRLEVVLQLDDRIIDFEKEGYDLAIRITR-LQDSSLIARQLGTSRRVVCCSPEYLERHG 177 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RI----SCLQVNSYLSIMQ 233 ++++ H I + P + F R GEP R+ N+ ++ Sbjct: 178 ALQRLEDILCHPCIGYSHNTPSQLWSFE-----PRVAGEPARMITPRGRFNTNNGQTMRD 232 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 V G G+A+LP +IV ++ R++E + +Y Y A + K++ F F+ Sbjct: 233 AAVRGLGLAILPLFIVAEDLAAGRLVEALPEERPLDDLIYAMYSRAATLSPKVRLFVQFL 292 Query: 291 --FLKARDW 297 L A W Sbjct: 293 QQALNAPPW 301 >gi|21231049|ref|NP_636966.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768946|ref|YP_243708.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188992060|ref|YP_001904070.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris str. B100] gi|21112677|gb|AAM40890.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574278|gb|AAY49688.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167733820|emb|CAP52026.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris] Length = 339 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 8 DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +HR + + + + + S +P G +R++ + L Q L L +FL YP ++ Sbjct: 68 TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPQFLGKYPKVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + N+ +D+ + D A+R+R + SL+ R + A+P YL P Sbjct: 128 LQLNISNRRVDVINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237 EL H ++ + ++ + + P GE R LQ L+ + +L Sbjct: 188 PGELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239 Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 240 DGFGITMLPETVCAEA---VRNGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293 >gi|50086132|ref|YP_047642.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1] gi|49532108|emb|CAG69820.1| putative transcriptional regulator (LysR family) [Acinetobacter sp. ADP1] Length = 309 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 138/289 (47%), Gaps = 7/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA GS + AA++ ++S S S++I LE+ + ++LFYR R +TLT++G K Sbjct: 9 DDFQFFIRVADCGSLSKAAQEANISVSVASQRIQRLESTLKLRLFYRTTRKITLTDEGRK 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L T + L +G LR+ T+ G +L + F LL+P + I Sbjct: 69 LLDFGRYWLDDFITLKDTLTARDKPLTGNLRVTTSATFGIKILTKVIANFALLHPTLNIY 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L++++ID+ D AIR+ K + SSL+ + L+T H AAP YL P SI++ Sbjct: 129 LDLNDQNIDLIEHGMDLAIRIGK-LNDSSLVAKPLMTNHRLICAAPSYLNQYGMPHSIED 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +H I + D L R + + + NS +I Q + G GI+ Sbjct: 188 LQQHRCILQQH--QNGLTDHWQLIDQKRTVVDVHLKAYFTTNSGEAIRQAALQGLGISNH 245 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V D+ +L+ ++ + T+Y +P K + F +++ Sbjct: 246 SRWHVADDLEQGHLIELLPEYQIEPTTIYAVFPNRQFRQPKTELFLSYL 294 >gi|226807744|ref|YP_002791440.1| putative transcriptional regulator [Enterobacter cloacae] gi|226810058|ref|YP_002791753.1| putative transcriptional regulator [Enterobacter cloacae] gi|226425971|gb|ACO54064.1| putative transcriptional regulator [Enterobacter cloacae] gi|226426285|gb|ACO54377.1| putative transcriptional regulator [Enterobacter cloacae] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L+VF VAR SFT AA ++ ++ S+IS + LE +GI+L R R ++ TE G + Sbjct: 2 DELKVFLTVARLKSFTKAAAEIGVTPSAISHTVKSLEERLGIRLLARTTRSISTTEAGER 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L E KP+G +R+ D+ Q L++ L +FL YPDIQI+ Sbjct: 62 LINEVGPLMEQVDDAISRLSELREKPTGVIRLTAADDVIQYLIRPVLPDFLSRYPDIQIE 121 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D DI D IR + + + + AAP Y K +P Q+ Sbjct: 122 IGIDYGFTDIVDQRFDAGIRPGDVLNNDMIAAKISQNWRQLVVAAPDYFKRYAKPRKPQD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L HN I + + W D ++ + NS + + + G GIA + Sbjct: 182 LLNHNCINVRYSDTSGL--YAWEFEKDAQKFSLKVKGQYIANSTIHQLDAALDGLGIAYI 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVY-FCYPEALKNTGKLKAF 286 P+Y+ + L+ ++ + P F Y YP +++ AF Sbjct: 240 PEYVADGYIKSGKLIAVLTE-WCPYFDGYHIYYPHRRQDSPAFMAF 284 >gi|161620186|ref|YP_001594072.1| LysR family transcriptional regulator [Brucella canis ATCC 23365] gi|161336997|gb|ABX63301.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G +L R R +LTE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +++ Q + E+S G+++++ ++ +L +F L +P+I + + Sbjct: 66 YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ + +Q SSLI ++L H AP + +P ++L Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + ++++ + P +++NS ++ + G G +LP Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I +D L+ +++ I +Y YP K++A +F+ Sbjct: 243 FIAEDEIEQGRLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289 >gi|209920981|ref|YP_002295065.1| putative transcriptional regulator [Escherichia coli SE11] gi|293453826|ref|ZP_06664245.1| LysR family transcriptional regulator YhjC [Escherichia coli B088] gi|209914240|dbj|BAG79314.1| putative transcriptional regulator [Escherichia coli SE11] gi|291321952|gb|EFE61383.1| LysR family transcriptional regulator YhjC [Escherichia coli B088] gi|323154027|gb|EFZ40233.1| hypothetical protein ECEPECA14_4057 [Escherichia coli EPECa14] gi|323160585|gb|EFZ46526.1| hypothetical protein ECE128010_3156 [Escherichia coli E128010] gi|323182991|gb|EFZ68392.1| hypothetical protein ECOK1357_3879 [Escherichia coli 1357] Length = 299 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|307316450|ref|ZP_07595893.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306897648|gb|EFN28391.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 310 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF GS AA +L S +++SR +S LE VG++L +R R L L+E G + Sbjct: 5 DAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSEAGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V LE + P G L I++ LG+ +L+ L +FL LYP + ++ Sbjct: 65 YAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPTVSVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184 L+L ++ +++ + D A+R+ + + SSLI +L + A+P YL N Sbjct: 125 LLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRIEEPA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239 +L KH ++ F + +E +++ ++V R I PR C+ VNS + G Sbjct: 184 DLAKHQILAFTNF---GLESWSFTPAKGSSVPRTIQFTPR--CI-VNSVRAAAASAAAGR 237 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ L Y V + + L ++ D P + P+ + K++AF +F Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDF 290 >gi|254787878|ref|YP_003075307.1| HTH-type transcriptional regulator YhjC [Teredinibacter turnerae T7901] gi|237684647|gb|ACR11911.1| putative HTH-type transcriptional regulator YhjC [Teredinibacter turnerae T7901] Length = 302 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 137/289 (47%), Gaps = 6/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F A SFT AAE L ++++ +S + LE ++G +LF+R R + L+ G++ Sbjct: 5 EAMRIFKRTAELLSFTAAAEDLGMAKAKVSAAVQQLEDDLGSRLFHRTTRRVQLSPDGAE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R S + L+ + +L+ SG +R+ + + +NL+ L EFL YP + ++ Sbjct: 65 FLRGCSAIMDDLDALEGQLR-GDTDVSGNIRVDMNVSVAKNLIIPRLPEFLACYPKVTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D + D +R+ + +Q S+L+ R L + A+ YL+ EP S ++ Sbjct: 124 LSSVDYFVDPVKEGFDLVLRVGE-LQDSTLVARYLGDMQFMNCASRDYLEKYGEPQSPED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 + H ++ + W R E R+ ++VN+ + C+ G GIA + Sbjct: 183 MHHHRVVDYCANSVAGTRSAAWEYWDGRQFQEMRVPYSIRVNNVEAYRAACLAGLGIAQM 242 Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + N LV I+ + V+ YP K++ F +++ Sbjct: 243 PRVSLHRDAANEQLVEILHAYSAGALPVHLLYPNRRNMPRKVRVFMDWL 291 >gi|190892535|ref|YP_001979077.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190697814|gb|ACE91899.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 300 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 18/261 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V G F+ AA ++ S++S+ ++ LE +G++L R R L LT +G + Sbjct: 14 VFVSVVERGGFSAAATARRMTPSAVSKLVARLEARLGVRLVNRSTRKLQLTPEGCAFYER 73 Query: 70 TSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + + + E Q SS + +G++RI T+ G ++L + F+ L+P + + + Sbjct: 74 SIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLDIAH 131 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + AD AIR P++SSSLI RKL A+P YL EP S+ +L + Sbjct: 132 TDRIVDLMEERADVAIRA-GPLKSSSLIARKLGATRKLIVASPDYLGRHGEPRSVADLRR 190 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALL 244 H I F + +E + R GE P +QV ++ + G+G+A L Sbjct: 191 HCRIGFS--YARAIEGWPM-----RESGETVTIPITPGIQVADGEAMRHLALSGAGLARL 243 Query: 245 PDYIVK---DNPNLVRIMEDV 262 + V+ D LV ++E+ Sbjct: 244 ASFTVRADIDAGRLVPVLEEA 264 >gi|78059746|ref|YP_366321.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77964296|gb|ABB05677.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 308 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 7/284 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA GSFT AA +++ + S +SR IS LET + +LF R R + LTE G + Sbjct: 1 MKAFVRVAEEGSFTGAASRMNTTTSYVSRAISALETHLRARLFNRSTRRIALTEAGERYM 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R +++ ++ + E ++ +PSG+LR+ + GQ+ + + F +P + + L Sbjct: 61 RRCEQIFASIDEAEAEAADAQARPSGRLRVHSPTSFGQSYVVPAVVAFRKQHPAVSVDLT 120 Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L K D+ + D +++L + S LI ++L +H A+P YL P S+ +L Sbjct: 121 LSQKVPDMLEEGYDVSLQLTATTLPDSGLISQRLGVLHSVLCASPSYLARHGLPRSVADL 180 Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 D H + L P + F+ D P P S L VN ++ +GI +P Sbjct: 181 DGHQCVPIVSSLFPHDLWHFDG-PHGDEPFRLPPASFL-VNGADALATALREEAGIGAVP 238 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + LVR++ + T + YP K+K F Sbjct: 239 MPTALPAMRSGALVRVLPEHTLQPLTAHVLYPSRQYLDAKIKTF 282 >gi|254489886|ref|ZP_05103081.1| LysR substrate binding domain protein [Methylophaga thiooxidans DMS010] gi|224464971|gb|EEF81225.1| LysR substrate binding domain protein [Methylophaga thiooxydans DMS010] Length = 295 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 118/263 (44%), Gaps = 25/263 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F V SG F+ AA L + +SR +S LE + L R R + LTE+G Sbjct: 8 EDLETFIAVVDSGGFSSAALLLDQQVAKVSRAVSRLEAALNCTLLNRTTRRIELTEEGHL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E LE + L+ KPSG+LR+ + L + EF LYPDI + Sbjct: 68 FIAYAREGLTALEKGEDMLRLMHGKPSGRLRVDAASPFVLHQLTPLISEFTTLYPDIHLD 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ID+ D AIRL P + S++ R L + A+P YL REP + + Sbjct: 128 ITSHDSIIDLLEHKTDVAIRLGDP-KDSNINSRLLGRSKLRLVASPDYLAKQREPHTESD 186 Query: 186 LDKHNLITFGD--------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L H LI F D LI K M F + +S ++ Q C+ Sbjct: 187 LMSHRLIAFTDAPSLNDWPLINKVMLTF----------------AIGASSGETVRQLCLA 230 Query: 238 GSGIALLPDYIVKDNPNLVRIME 260 G G+ALL +++++ + N +++E Sbjct: 231 GQGVALLSNFMIRQDLNQGKLVE 253 >gi|17989480|ref|NP_542113.1| LysR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|62317056|ref|YP_222909.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269049|ref|YP_418340.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus 2308] gi|163844296|ref|YP_001621951.1| hypothetical protein BSUIS_B0103 [Brucella suis ATCC 23445] gi|189022321|ref|YP_001932062.1| LysR substrate binding domain protein [Brucella abortus S19] gi|225628575|ref|ZP_03786609.1| LysR family transcriptional regulator [Brucella ceti str. Cudo] gi|225685962|ref|YP_002733934.1| LysR family transcriptional regulator [Brucella melitensis ATCC 23457] gi|237816617|ref|ZP_04595609.1| LysR family transcriptional regulator [Brucella abortus str. 2308 A] gi|254691460|ref|ZP_05154714.1| transcriptional regulator, LysR family protein [Brucella abortus bv. 6 str. 870] gi|254695243|ref|ZP_05157071.1| transcriptional regulator, LysR family protein [Brucella abortus bv. 3 str. Tulya] gi|254698343|ref|ZP_05160171.1| transcriptional regulator, LysR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699411|ref|ZP_05161239.1| transcriptional regulator, LysR family protein [Brucella suis bv. 5 str. 513] gi|254702530|ref|ZP_05164358.1| transcriptional regulator, LysR family protein [Brucella suis bv. 3 str. 686] gi|254706344|ref|ZP_05168172.1| transcriptional regulator, LysR family protein [Brucella pinnipedialis M163/99/10] gi|254711366|ref|ZP_05173177.1| transcriptional regulator, LysR family protein [Brucella pinnipedialis B2/94] gi|254711965|ref|ZP_05173776.1| transcriptional regulator, LysR family protein [Brucella ceti M644/93/1] gi|254715035|ref|ZP_05176846.1| transcriptional regulator, LysR family protein [Brucella ceti M13/05/1] gi|254731786|ref|ZP_05190364.1| transcriptional regulator, LysR family protein [Brucella abortus bv. 4 str. 292] gi|256014890|ref|YP_003104899.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|256030004|ref|ZP_05443618.1| transcriptional regulator, LysR family protein [Brucella pinnipedialis M292/94/1] gi|256043021|ref|ZP_05445967.1| transcriptional regulator, LysR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256158173|ref|ZP_05456085.1| transcriptional regulator, LysR family protein [Brucella ceti M490/95/1] gi|256252881|ref|ZP_05458417.1| transcriptional regulator, LysR family protein [Brucella ceti B1/94] gi|256256645|ref|ZP_05462181.1| transcriptional regulator, LysR family protein [Brucella abortus bv. 9 str. C68] gi|256262913|ref|ZP_05465445.1| LysR substrate binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260166945|ref|ZP_05753756.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99] gi|260544292|ref|ZP_05820113.1| LysR substrate binding domain-containing protein [Brucella abortus NCTC 8038] gi|260564255|ref|ZP_05834740.1| LysR substrate binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260757079|ref|ZP_05869427.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759551|ref|ZP_05871899.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762796|ref|ZP_05875128.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882889|ref|ZP_05894503.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261215606|ref|ZP_05929887.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261216739|ref|ZP_05931020.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261219969|ref|ZP_05934250.1| transcriptional regulator [Brucella ceti B1/94] gi|261313789|ref|ZP_05952986.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261318971|ref|ZP_05958168.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261319606|ref|ZP_05958803.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261749861|ref|ZP_05993570.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261753104|ref|ZP_05996813.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261756330|ref|ZP_06000039.1| LysR substrate binding domain-containing protein [Brucella sp. F5/99] gi|265987025|ref|ZP_06099582.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265989460|ref|ZP_06102017.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265996687|ref|ZP_06109244.1| transcriptional regulator [Brucella ceti M490/95/1] gi|297250000|ref|ZP_06933701.1| hypothetical protein BAYG_02778 [Brucella abortus bv. 5 str. B3196] gi|17985362|gb|AAL54377.1| transcriptional regulatory protein, lysr family [Brucella melitensis bv. 1 str. 16M] gi|62197249|gb|AAX75548.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str. 9-941] gi|82939323|emb|CAJ12262.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain [Brucella melitensis biovar Abortus 2308] gi|163675019|gb|ABY39129.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020895|gb|ACD73616.1| LysR substrate binding domain protein [Brucella abortus S19] gi|225616421|gb|EEH13469.1| LysR family transcriptional regulator [Brucella ceti str. Cudo] gi|225642067|gb|ACO01980.1| transcriptional regulator, LysR family protein [Brucella melitensis ATCC 23457] gi|237787430|gb|EEP61646.1| LysR family transcriptional regulator [Brucella abortus str. 2308 A] gi|255997550|gb|ACU49237.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|260097563|gb|EEW81437.1| LysR substrate binding domain-containing protein [Brucella abortus NCTC 8038] gi|260151898|gb|EEW86991.1| LysR substrate binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260669869|gb|EEX56809.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673217|gb|EEX60038.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260677187|gb|EEX64008.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872417|gb|EEX79486.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260917213|gb|EEX84074.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260918553|gb|EEX85206.1| transcriptional regulator [Brucella ceti B1/94] gi|260921828|gb|EEX88396.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261292296|gb|EEX95792.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261298194|gb|EEY01691.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261302815|gb|EEY06312.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261736314|gb|EEY24310.1| LysR substrate binding domain-containing protein [Brucella sp. F5/99] gi|261739614|gb|EEY27540.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261742857|gb|EEY30783.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262550984|gb|EEZ07145.1| transcriptional regulator [Brucella ceti M490/95/1] gi|263000129|gb|EEZ12819.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092751|gb|EEZ16960.1| LysR substrate binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264659222|gb|EEZ29483.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|297173869|gb|EFH33233.1| hypothetical protein BAYG_02778 [Brucella abortus bv. 5 str. B3196] gi|326410283|gb|ADZ67347.1| LysR substrate binding domain protein [Brucella melitensis M28] gi|326553576|gb|ADZ88215.1| LysR substrate binding domain protein [Brucella melitensis M5-90] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G +L R R +LTE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +++ Q + E+S G+++++ ++ +L +F L +P+I + + Sbjct: 66 YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ + +Q SSLI ++L H AP + +P ++L Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + ++++ + P +++NS ++ + G G +LP Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I +D L+ +++ I +Y YP K++A +F+ Sbjct: 243 FIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289 >gi|323174169|gb|EFZ59797.1| hypothetical protein ECLT68_1382 [Escherichia coli LT-68] Length = 299 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|126729996|ref|ZP_01745808.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] gi|126709376|gb|EBA08430.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 22/290 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW ++ F V SGS + AA +L +SQ + RQ+ +E + + LF+R ARGL LTE Sbjct: 7 LDWSLVQTFLAVGESGSLSEAARRLKISQPTAGRQVKQMEEALDVTLFHRQARGLCLTEA 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L + L + S K SG +RI ++ Q L + P+I Sbjct: 67 GTALMPHARTMAESLNALSLAAAGRSEKLSGPVRITASVFTSQVHLPPIIARLRQEEPEI 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L+ ++ ++ AD A+R+ + + ++ + + I + YA+ Y+ Sbjct: 127 SIDLVPTDRSENLLYREADIAVRMFQ-TEQLDIVTKYIGEIELGLYASKDYIARRGRLTD 185 Query: 183 IQELDKHNLITF--GDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQY 234 + H+++ + DLI K M +F +W AT + + + Sbjct: 186 MAGFFDHDVVGYDRSDLILKGMRNFGLEVQRDWFAT-------------RTDHQTVYWEL 232 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G GI +P + R++ D+ P+ V+ EA++NT +++ Sbjct: 233 VRAGCGIGFAQCLFADADPKVERLLPDIPMPTLPVWLAAHEAMRNTPRIR 282 >gi|325267607|ref|ZP_08134259.1| LysR family transcriptional regulator [Kingella denitrificans ATCC 33394] gi|324980957|gb|EGC16617.1| LysR family transcriptional regulator [Kingella denitrificans ATCC 33394] Length = 296 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 130/271 (47%), Gaps = 15/271 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SGSFT AAE L +S S+ ++ LE +G +L YR+ R L LTEQG + Sbjct: 7 LKVFCQVVQSGSFTKAAELLDISIPMASKHVAALEKNLGTQLLYRNNRSLKLTEQGEQYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S + L + Q P G LRI+ + + ++ + YP++++ L Sbjct: 67 RDCSHILELLAQANEQAQAGVCTPQGLLRISAPVWFACDYFARLVQAYREAYPEVELMLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D++ D D A+RL + + +++ + L I + A+P Y+ P ++ +L+ Sbjct: 127 LTNRAVDLNSDGEDLALRLSYEL-ADNIVAKPLGNIPFYLVASPAYIARHGLPETVADLE 185 Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H + ++ D+ +E +++ + N + + G+GI +P Sbjct: 186 RHQAVMPSYADMSKMQIEHSGEKSSLHLH------GTVASNHTQMVAALILAGAGIGYMP 239 Query: 246 DYIVKD---NPNLVRIMED---VITPSFTVY 270 ++ D + LV ++ I P + VY Sbjct: 240 SWLADDALSDGRLVHLLPQHQINIPPLYAVY 270 >gi|269961831|ref|ZP_06176188.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833409|gb|EEZ87511.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 299 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 144/298 (48%), Gaps = 14/298 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++L +F+ +A+ GS T AA +L ++ S+S+ + LE ++G+ LF R R + LTE G Sbjct: 6 YNQLMMFHTIAQEGSITAAARKLEIAPPSVSQALKMLEEQLGLPLFTRTTRRIELTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L+ T +L + + S PSGK+RI + Q+LL+ EF YP IQ+ Sbjct: 66 LLYERTLASMSELNLAVESVSDLSRVPSGKVRITVPRFVYQSLLKPIYIEFCQRYPSIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + +K IDI D D IR ++ + ++ + + +A+P Y++ P + Sbjct: 126 EISVSDKAIDIIRDGFDMGIRFGDRVEEGMIARQLTLPVKEALFASPGYVEQYGLPETPD 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H LI + + P + + TV+ P + L VN ++ G Sbjct: 186 DLKQHKLIQYRFISSNQVAPLNLNNQGETLTVNMP------TALIVNDTDVMIDAAHNGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GI + +V++ +V ++E+ P +Y + + + +++ +F+ KA Sbjct: 240 GIGRIVTPMVEEGFKKGEIVPVLEEYWQPYSGLYVYFHKNTQKAKRVRVLIDFLLEKA 297 >gi|167836173|ref|ZP_02463056.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 299 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 5 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E T+ + S V PSG LR+ +G+ ++ L FL YP I + Sbjct: 65 LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPGFLDRYPQISVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPHTPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++H + + + + W V R R++ VNS + + C+ G G+ Sbjct: 184 LERHQPVNYASPSNGRIAPWEWTEGDAVRRVALRGRVT---VNSAEAYIACCLSGLGLIQ 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ + + YP + + + F ++ Sbjct: 241 IPAYDVAAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290 >gi|254511331|ref|ZP_05123398.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] gi|221535042|gb|EEE38030.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] Length = 292 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 10/296 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AA+ L + +++ R I +E +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + ++ SG L + + L L+ L EF +P + Sbjct: 63 EDLLRVAQATEDQFNQLVGRMKGRGDDVSGDLVVTSLASLAP-LVVPTLTEFQQAHPGLI 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ + A AIR P Q +++Q + + +A+ Y++ P Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAAPDQPDNVVQ-PFIPQEIGLFASKAYIERHGRPSG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + + H+ + G+ F+ WL R R + + + + + G+GI Sbjct: 181 LADFADHHFV--GNDDENSRAPFSRWL----RANAPERAITFRCTNNFCMREAVLAGAGI 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + + +P+LV +ME + S ++ L T K++AF +F+ +++ W Sbjct: 235 GFMARWEAARDPDLVEVMEPLPEWSGKLWLVTHVDLHRTTKVQAFLSFLKGQSKGW 290 >gi|221200768|ref|ZP_03573809.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2M] gi|221206964|ref|ZP_03579975.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2] gi|221173038|gb|EEE05474.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2] gi|221179340|gb|EEE11746.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2M] Length = 310 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 137/300 (45%), Gaps = 21/300 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF AA L +S S++S + LE ++ ++LF R R + LTE G +L Sbjct: 8 ELTAFIAIAEQQSFRAAARVLGISPSALSHAMRSLEAKLSVRLFNRTTRSVALTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R LE E + +PSG ++I+T+ L++ L EFL YPDI+++ Sbjct: 68 LRRVRPAVADLEDAINEAASARNRPSGTIKISTSEAAALPLVRQVLPEFLDRYPDIRVEF 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D++ +DI + D IRL + + R + + A A+P YL+ P EL Sbjct: 128 VVDSRFLDIVANGFDAGIRLHDDVPRDMIAVRFQPDMVLAAVASPGYLQRHDAPKEPHEL 187 Query: 187 DKHNLITF----GDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H I F G L+ M N VD L + ++ +++ + G G Sbjct: 188 TQHRCIRFRFESGALLEWEMIRRGKNAHVAVD--------GSLTLGNWNLVVEAALAGIG 239 Query: 241 IALLPDYIVKDNPNLVRIME--DVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297 IA LP V ++ R++ +PSF + YP L+ F + + R+W Sbjct: 240 IAWLPVSHVSEHLTAGRLVHLLPEWSPSFPGLCLYYPANRHLPTALRLFADTV----RNW 295 >gi|239820097|ref|YP_002947282.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] gi|239804950|gb|ACS22016.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 307 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%) Query: 10 VFYVV--ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 VFY V G FT A L L +S++S ++ LE+ +G++L R +R +T+ G + + Sbjct: 7 VFYFVQVVDRGGFTAAGSALRLPKSTLSHRVQELESYLGVRLLNRTSRQFGMTDIGKEFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H + + +++ +PSG +R+ T +++ Q L+ L FL YP ++I I Sbjct: 67 QYAVAMLHSSDVAEEAVRQRLAEPSGVIRLTTAVEIAQFALREILPVFLNRYPKVRIVEI 126 Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ + D AIR +Q+S+L+QR L + + +A+P YL P S +L Sbjct: 127 ATDRYVDMVGEGFDLAIRGHTGSLQNSTLVQRALADVPWYLFASPGYLAQSGVPESPADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242 +H + P W + P GE P Q N+ +++ + GIA Sbjct: 187 GQHASVAMVRNGP-----LQW--QLKGPHGEELAMPIDPRFQSNNMVALKEAACASLGIA 239 Query: 243 LLPDYIVK 250 LP YI + Sbjct: 240 ALPGYICR 247 >gi|58038992|ref|YP_190956.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H] gi|58001406|gb|AAW60300.1| Transcriptional regulator LysR family [Gluconobacter oxydans 621H] Length = 323 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 11/295 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + F V +GS T A E+ +S + + + LE +G L R R +LT G+ Sbjct: 4 FQAMTTFMAVVETGSMTAAGERCGISPTMVGNYVRLLEERLGTSLLRRTTRRQSLTAFGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + L+ T+ Q + PSG LR+ + G + L +L P + + Sbjct: 64 VYFEKCQSILKLLDETEHLAQAAQTLPSGTLRVTAPVTYGTQSVTPCLARYLAENPSVDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L + +D++ + D AIRL P + SSL+ R+L M A+P YL E L Q Sbjct: 124 DLVLTERSVDLTHEKFDIAIRLGVP-EPSSLMCRRLTDYRMTLCASPEYLDRREELLVPQ 182 Query: 185 ELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239 +L H+ + F P W + P G + + NS ++ + + G Sbjct: 183 QLATHDALAFAYTSSSPWHWARHEW--HFESPKGRVTVEMRRRGLFNSTQAMRRAALGGL 240 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA+LP +V+D+ L ++ D PS +Y Y + + L +F FI Sbjct: 241 GIAMLPTDLVQDDLKAGTLQALLPDYTLPSRPIYLLYHKERYSAPTLHSFIRFIM 295 >gi|260901544|ref|ZP_05909939.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|308110898|gb|EFO48438.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] Length = 298 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 102/187 (54%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + + G +R+ +G++++ + EF+ YP + I L Sbjct: 70 HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPHVSIDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D A R+ + + + + RKL+T+ M A+P Y++ P+ +EL Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPIHPKEL 188 Query: 187 DKHNLIT 193 +H +T Sbjct: 189 AEHRTLT 195 >gi|163856178|ref|YP_001630476.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163259906|emb|CAP42207.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 299 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 137/292 (46%), Gaps = 13/292 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++RVF V +GSF AAE L +S++ +SR ++ LET +G++L R R +LTE+G Sbjct: 4 FEEMRVFTAVVEAGSFVKAAESLRMSKAGVSRHVTELETRLGVRLMQRTTRRQSLTEEGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + E+ S + G LR+ + G L F +P + + Sbjct: 64 LFYERCKMLLAEVEDAETEVNSRSGEVGGLLRVNAPLTFGVRHLAPLWAVFKAQHPRLTL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L ++ +D+ + D A+R+ + + S+LI R L + M A+P Y++ P + Sbjct: 124 DITLADRVVDLVDEGYDVAVRITQ-LADSTLISRHLASTRMVLCASPAYIQAHGRPEHPK 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 EL H I + + F+ GE + ++ N+ + +Q + G+ Sbjct: 183 ELAMHAAIAYSYWAGRDEWRFHGSE------GEVSVRIQPVMRANNGDTCVQAALAHLGV 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P ++V D +LV +M +Y YP +++A +F+ Sbjct: 237 ILQPTFLVGDALRAGSLVELMPQYRCAELGIYAMYPTRRHVPPRVRALVDFL 288 >gi|86144913|ref|ZP_01063245.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222] gi|218677137|ref|YP_002395956.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32] gi|85837812|gb|EAQ55924.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222] gi|218325405|emb|CAV27516.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32] Length = 305 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 135/287 (47%), Gaps = 10/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AEQ +L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + + SG ++++ G +L + EF ++P + + Sbjct: 64 MLHGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ +D+ D D IR ++ SSLI R ++ A+P Y+ +P+ ++ Sbjct: 124 MSLNNRFVDLVEDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMQPKD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RIS-CLQVNSYLSIMQYCVLGSG 240 L +HN + + E + +L + D R+S ++ ++ + + G G Sbjct: 183 LVEHNCLQYAYQTTGASE-WQFLHSKDGCTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +A +P +V N LV I D++ +Y YP + K+K Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIK 288 >gi|221197213|ref|ZP_03570260.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221203885|ref|ZP_03576903.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221176051|gb|EEE08480.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221183767|gb|EEE16167.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 303 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 129/294 (43%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F R SFT AA +LHL+QS+ISRQI LE +G LF R R L LT G + Sbjct: 12 LVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQ 125 ++V+H L T E +KP G L + G L L L +F YP+I+++ Sbjct: 71 --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPDFRAAYPNIKLR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI+ + +S D + + + R+L + AP YL L + Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPRYLAG--RTLDAAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L L+ D + M W +DRP +P+ + +NSY I+Q +LG G++L Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFDQNDIDRPKAQPQD--ITINSYPQIVQMTILGQGVSL 243 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 Y++ + LVR+ + + Y P + F ++F +A Sbjct: 244 GWRYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297 >gi|167035256|ref|YP_001670487.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166861744|gb|ABZ00152.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 305 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 136/286 (47%), Gaps = 5/286 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V+ SFT AAE L L +S++S Q+ LE +G +LF R R + T+ G+ L+ Sbjct: 8 LRTFVRVSEVSSFTQAAESLGLPRSTVSEQVRALERLLGTQLFNRTTRRVQATQDGALLY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + + +G+LRI + + ++ L +FL +P ++++L Sbjct: 68 ERSKDLLSGMDEIESLFSADDAELAGRLRIDLPTMMARRVIIPALPQFLQRFPRLEVELS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ +Q ++ R + + M A+P YL P ++Q+L Sbjct: 128 CTDRQVDLLREGFDCVMRI-GALQDLDVVARPVGQLSMRNCASPAYLARYGVPRTLQDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H L+ + + F +L + + + VN+ + C+ G G+ +P Sbjct: 187 DHQLVHYVRTLGARSAGFEYLQGGELQF-QAMAGVVTVNNAEAYSAACLAGLGLIQVPAV 245 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V ++ LV ++ED P+ V Y +++AF ++ Sbjct: 246 GVAEHLQRGELVSLLEDWQAPAMPVSLLYARQRHVPRRVQAFMQWL 291 >gi|209548508|ref|YP_002280425.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534264|gb|ACI54199.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 295 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 1/197 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L+ F VA +GSF AA +L+LS + + R++ LET+ G+KL R R LTE G Sbjct: 3 DLTNLKTFVAVATAGSFAKAAARLNLSPAMVGRRVQALETDYGVKLIERTTRTQRLTEIG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + S V +LE + SG LRI+ LG L ++ F +P + Sbjct: 63 RRFLERASRVIDELEQLNDITGPDNHGISGHLRISGPTTLGVKRLASSIARFANQHPAVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L ++++D+ + D AIR+ ++ SSLI RK+ T A+P YL P Sbjct: 123 LELNLTDRNVDLIAEGYDLAIRVAH-LRPSSLIARKIGTYRFVCCASPRYLGKNGTPTHP 181 Query: 184 QELDKHNLITFGDLIPK 200 ++L +H I +L+P+ Sbjct: 182 EQLQEHRCILSLNLVPR 198 >gi|172063243|ref|YP_001810894.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171995760|gb|ACB66678.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 315 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 18/295 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YPD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P Q+L Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPARPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H +T L W+ + + ++ +Q N+ S+ G GI +LP Sbjct: 186 GAHACLT---LCTPAFPTHEWVLEGAEGVEQIHVAGPVQTNTAESLALAIRDGIGIGMLP 242 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 Y D + LVR++ + I VY YP R F+ K R W Sbjct: 243 LYSAIDALRDGTLVRVLPEHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|157372916|ref|YP_001480905.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157324680|gb|ABV43777.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 323 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 3/200 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F +VA GSF+ AA ++ +++SR I+ LE +G++LF R R + LT+ G Sbjct: 29 LELFCLVAEVGSFSAAAVSSGITPAAVSRSIARLEDRLGVRLFVRSTRHIHLTDAGKSYA 88 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E ++ + ++Q ++P+G LR++ L L F YP IQ+ L Sbjct: 89 EQCREAIALIDNAERQIQGQQLEPAGLLRVSIPTPYAHYRLLPVLAAFSQRYPKIQLALN 148 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N ++D++ D AIR P S+LI RKL + AAP YL P+ ++L Sbjct: 149 LNNANVDLTDGGYDLAIRGYHP-ADSNLIARKLEDAELVVVAAPDYLARAGTPVHPEDLA 207 Query: 188 KHNLITFGDLIPKCMEDFNW 207 +HN I F +P + W Sbjct: 208 QHNCIQFE--LPSTGKSAPW 225 >gi|83646247|ref|YP_434682.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83634290|gb|ABC30257.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 299 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 144/296 (48%), Gaps = 16/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++ F A+ GSFT AAE L ++S+IS++I+ LET +G+ L +R R L LT G Sbjct: 6 WIGIQEFVTAAKYGSFTSAAEYLGTTKSNISKKITHLETRLGVTLLHRSNRRLVLTSAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++++ LE + E+ SG + ++ +G++LL + +F L+PD+ Sbjct: 66 VYFEHSTKLLKTLEQNDQLVIETQEHLSGPIVVSLPPGIGESLLMEPICKFQQLHPDVTF 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ID+ D A RL P +LI R L A+P ++K P IQ Sbjct: 126 VTNVSIQCIDLVEQPFDLAFRL-SPTIDPNLIARPLRRAPYRLCASPQFIKT-HSPKEIQ 183 Query: 185 ELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLG 238 ++ + + + + D L PK N + + P + + +C+ +S +++Q C Sbjct: 184 DITRLSCLAYSDQLSPK-----NAVWSFKNPQNQQVLQLEINACIYSDSVTTLVQACHRH 238 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +GI D+ V + +LV + E+ I+ ++ YP+ +++AF +F+ Sbjct: 239 AGILYCSDFFVAKHIAEASLVSLFEEWISNENQLWLVYPDRKSVKRRVRAFIDFVL 294 >gi|296270071|ref|YP_003652703.1| LysR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092858|gb|ADG88810.1| transcriptional regulator, LysR family [Thermobispora bispora DSM 43833] Length = 312 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 37/293 (12%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FD + LR+F V AR+GSFT AA +L+ +QS++SR+I+ LE E G LF R RG+ LT Sbjct: 2 FDTEALRLFDVAARTGSFTAAAAELNYTQSAVSRRIAALEAEAGGPLFERLPRGVRLTPA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G LHR EV +L+ EL G+LR+ L+ L+ F +P + Sbjct: 62 GEVLHRYAREVLERLDRAGEELAALHAGTGGRLRVGAFATANAVLVPHALRAFRRTHPGV 121 Query: 123 QIQLI----------LDNKDIDISM--DYADCAIRLRKP---IQSSSLIQRKLVTI---- 163 ++L+ L N IDI++ DY L P +Q L++ +L+ Sbjct: 122 AVRLVEGFSADLIDALRNAAIDIAVVSDYF-AGPHLPHPADDVQVVPLLEDELLIALPAG 180 Query: 164 HMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL 223 H A A +L++ RE I ++ G + F PR+ + Sbjct: 181 HRLAGADVVHLRDLREESWIAGPPPDDITPLGQACARA--GFT-----------PRVD-I 226 Query: 224 QVNSYLSIMQYCVLGSGIALLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYP 274 ++ +++ + Y G G+ L+P P ++R + D + P VY P Sbjct: 227 RITAWIGKLGYVAAGLGVTLVPVMAAPAVPADVVLRPIGD-LAPRRMVYAALP 278 >gi|288935986|ref|YP_003440045.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288890695|gb|ADC59013.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 293 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 128/252 (50%), Gaps = 15/252 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+WD R+F +AR+G+ + AA+++++ +++SR++ LE + + LF RH G LT+ Sbjct: 5 FNWDDARIFLAIARAGTLSGAADKMNMGIATVSRRLDRLEQSLKVPLFSRHQSGYRLTDD 64 Query: 63 GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L R + Y L + + V +G +R+AT+ +L + + +LK L YPD Sbjct: 65 GEALLARAEALEYAGLAFGEAAQLQGHV--AGVVRLATSDNLATHFILPSLKGLLGHYPD 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++++ + +++ AD AIR+ KP + L ++L T+ Y A YL + L Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP-DAGHLTLKRLGTVGFGVYGAASYLAGA-DGL 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 S+ E D +P W+ R G P C ++ N+ ++ + G G Sbjct: 181 SLSEADFVGWPETHQHLPAA----QWITRTLR--GRP---CKVEANTLVAQVSAVSAGLG 231 Query: 241 IALLPDYIVKDN 252 + +LP ++ + N Sbjct: 232 LGVLPHFMARAN 243 >gi|261250747|ref|ZP_05943321.1| transcriptional regulator [Vibrio orientalis CIP 102891] gi|260937620|gb|EEX93608.1| transcriptional regulator [Vibrio orientalis CIP 102891] Length = 294 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 25/290 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA S F+ AA+QL S S +SRQ++ LE +G+ L R R ++LTE G ++ Sbjct: 10 FVTVAESSGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTEAGQAYYQQC 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 E+ L+ +L + G LR++ +N + L EF +P++ ++L + Sbjct: 70 KELVIGLQQANEQLSTQQTQLRGVLRVSAAGVFAENYVAPALMEFAKQHPNLTVELNFNT 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++ D D AIR + + S L+ RKLV M + +Y+ P ++L HN Sbjct: 130 SMVNFIEDGFDFAIRYGR-LNDSGLVARKLVDRPMMVAVSQNYIDEHGLPTHPEQLRHHN 188 Query: 191 LITFGDLIPKCMEDFNWLATV-DRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248 I + WL D+P+ E ++ + N+ +++Q C G GIA LP Sbjct: 189 CIVSNTDV--------WLFEADDKPLDEVKVQGRWKSNNVHTVLQACEKGLGIAYLPKSS 240 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +D + LV I+E + + Y R F+ L+AR Sbjct: 241 FRDAILSGRLVPILEPYWGSGNSSWIVYQN-----------RRFLPLRAR 279 >gi|109899608|ref|YP_662863.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109701889|gb|ABG41809.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica T6c] Length = 298 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 18/291 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L+ F VAR SFT AA+ + LS+ ++R + +E +G++LF+R R ++LT QG + Sbjct: 6 SLQSFIEVARCSSFTKAADSIGLSRLQVTRHVQDIEQWLGLRLFHRTTRKVSLTLQGEET 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + + G +R+AT I LGQN+L ++ F+ ++P IQ+ Sbjct: 66 LGFAKQILSSVSDLESRAHSHNHELVGTIRVATPIGLGQNMLFDAIQAFVAIHPKTHIQM 125 Query: 127 ILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +L + + + D A+R + +P Q LI R+L+ I A P Y+ + + Sbjct: 126 VLSDGLSQLVDERVDIALRYIDQPHQ--QLIARRLMHIDSVLCATPGYIAEHAKLNQPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN + + +W AT D + P +Q N I++ + G GIA Sbjct: 184 LLAHNCLVHS-------SNPHWRVVSATSDEKV--PVSGNIQANEMGVILKAALRGLGIA 234 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + N LV+++ D TP ++ Y ++AF +F+ Sbjct: 235 CLPSDLANHYLLNRELVQVLPDYNTPGSNLWAVYLSRDHQQNVVRAFIDFL 285 >gi|157157897|ref|YP_001464991.1| LysR family transcriptional regulator [Escherichia coli E24377A] gi|157079927|gb|ABV19635.1| transcriptional regulator, LysR family [Escherichia coli E24377A] Length = 299 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|317493102|ref|ZP_07951526.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919224|gb|EFV40559.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 298 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 129/264 (48%), Gaps = 13/264 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS ISR I LE +G++L R R L++T+ G Sbjct: 6 NYNELYLFMQVVREGSFTAAAQRLGLAQSGISRSIRELEERLGVQLLVRTTRKLSVTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+R + L+ L PSG +RI + +L L F YPDI+ Sbjct: 66 EQLYRTVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAMFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 126 LELISESRFVDIIEERFDAGVRLGSDVGHGMVAVRISPDMEMVVVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H I + G L + D + RP G+ + +SY+ + LG Sbjct: 186 ADLVVHPCIAYQFGDGSLYAWELND-DGKKITHRPQGQWAFA----DSYME-AKAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIME 260 G+A +P+ +V D+ +L+R+++ Sbjct: 240 GLAYVPEELVADDLVQGSLIRVLQ 263 >gi|238896115|ref|YP_002920851.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238548433|dbj|BAH64784.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 310 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 15/301 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF V SG+F AA LH+++S++ + I+ LE +G+ LF R R LTE+G Sbjct: 12 DLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLTEEG 71 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E ++ + LQ + G+LR++ + GQ + L YP ++ Sbjct: 72 EQFYLQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYPLLK 131 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +++ + D A+R+ + SL R L M AA YL+ P +I Sbjct: 132 LELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAPQTI 191 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSG 240 L++H T G L ++ + D GE R S L + + +I G G Sbjct: 192 AGLNEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQGMG 246 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA----LKNTGKLKAFRNFIFLK 293 IA LPD++V + L +++ F ++ +PE K + A R + L Sbjct: 247 IAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDALRGGLPLT 306 Query: 294 A 294 A Sbjct: 307 A 307 >gi|330809016|ref|YP_004353478.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377124|gb|AEA68474.1| putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 301 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 13/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 LR F R +FT AAE+LH++QS++S Q+ LE G++LF+R + L LT G+ Sbjct: 8 SSLRAFEAATRHATFTAAAEELHVTQSAVSHQLKHLEQLWGLQLFHR-SSSLHLTSAGAA 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + E + KLE T +L+E + + +L ++TT L L + +P+I + Sbjct: 67 LAPIVREFFMKLEATLADLREQNGR--QRLSVSTTYSFALKWLLPRLPDLAQAHPEILLT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + I+ S D AIRL SL L + A+P L P + E Sbjct: 125 LDSTDSAINFSTTDPDVAIRLGSG-HFPSLFSEFLFREQIFPVASPALLARFGTPQTAAE 183 Query: 186 LDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L ++ L+T L+PK + W A + + + S ++ ++I + +LG GIAL Sbjct: 184 LLRYPLLTRDGAALVPKWEQ---WFAQMGVEVTTLKESIRYADTNMTI-EAALLGQGIAL 239 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 V+ N L R+ E YF P+ ++ + +FR ++ +A Sbjct: 240 ARSGHVEAELNDGRLERLFELPFASPLAYYFVCPKGIETQPHIASFRRWLVTQA 293 >gi|300927985|ref|ZP_07143542.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|301646056|ref|ZP_07245961.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|300463992|gb|EFK27485.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|301075727|gb|EFK90533.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] Length = 323 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSKNYLTAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|217971857|ref|YP_002356608.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217496992|gb|ACK45185.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 329 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 103/189 (54%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 4 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI +L + F+ ++P + ++ Sbjct: 64 FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I ++ +D+ D A + + + L+ R + T + YA+P YL P + +E Sbjct: 124 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPKTPKE 183 Query: 186 LDKHNLITF 194 ++ HN+ F Sbjct: 184 IEAHNVSMF 192 >gi|330808863|ref|YP_004353325.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376971|gb|AEA68321.1| putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 297 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 6/260 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L VAR SFT AA QL +SQS +S I LE VG++L R R +++TE G Sbjct: 6 YSDLLALIAVAREQSFTRAASQLGISQSMLSHSIQRLEARVGVRLLTRTTRSVSVTEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L ++ET I + E P+G +RI T + + +L L + L YP I + Sbjct: 66 RLLNTVEPRLREIETELIAVAEFGDTPAGNIRITATDHVIETVLWPKLAQALPKYPQISV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++++D DI D+ D IRL + + R + AP Y+++ P Q Sbjct: 126 EVVIDYGLTDIVADHFDFGIRLGDGLANGIEAVRIAPDMRFVMVGAPSYMESRAMPTRPQ 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L +H I +P + W D R+ L N I+ V G G+A Sbjct: 186 DLMEHECINM--RLPTRGGLYAWELEKDGQEINTRVKGRLVFNGINQILDAAVSGFGLAY 243 Query: 244 LPDYIVKD---NPNLVRIME 260 +P+ I N LV +M+ Sbjct: 244 VPEDIAHPHLVNGTLVPVMQ 263 >gi|331655147|ref|ZP_08356146.1| putative transcriptional regulator LYSR-type [Escherichia coli M718] gi|331047162|gb|EGI19240.1| putative transcriptional regulator LYSR-type [Escherichia coli M718] Length = 323 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|218680360|ref|ZP_03528257.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 894] Length = 299 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LRVF VA SFT AA++L +S + S+ + LE +G +L R +R ++LTE G Sbjct: 6 SLRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLENRLGTRLLNRTSRHVSLTETGRLY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 T E+ +L+ + + +V P G L+++ + L + YPD+ + L Sbjct: 66 FNQTREMLERLDEVEDAIGNVTVAPRGTLKLSAPVWAATGYFTDMLAAYNRRYPDVCLDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +++ + D A+R + L+ R L + A+P YL P ++ E Sbjct: 126 DLSGRLVNLVDEGFDLALRATSQDRLDPGLVARPLTNVQFRLMASPDYLARTGRPQNVAE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL-GSGIA 242 L+ H L+ + + + +++ P G +I+ + ++ +IM L G G+A Sbjct: 186 LNGHALLRYSGV------NLGESMSLEGPDGPHKITFRTVMLSDNETIMHLAALRGMGLA 239 Query: 243 LLPDYIVKDNPNLVR--IMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP ++ + + R I+ IT F T+Y YP + K++ F +F+ R+ Sbjct: 240 FLPAWMAEQDIEAGRLEIVLPAITLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297 >gi|83648136|ref|YP_436571.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636179|gb|ABC32146.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 302 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 136/295 (46%), Gaps = 15/295 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D L F +AR G T AA+QL +++S++S +S LE +KL R +R LT Sbjct: 1 MKEQADLLYTFQAIARCGGVTQAAQQLGIAKSTVSGHLSKLEQIYDVKLVQRSSRQFQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G KL + E+ L T+ + E + + SG +RI + G +L L +F ++P Sbjct: 61 AAGGKLLEHSLELVQLLTRTRTCMAEFTKQISGVVRITAPLASGNMILPELLHQFRRIHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + +L + N+ +D+ + D A R + SSLI R+L I A+P +L+ Sbjct: 121 AVTFELTMSNEQLDLLKNNIDVAFRA-TALNDSSLIGRRLGWIRGVMVASPEFLRQNPLG 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237 +Q L + +I + D +W V+ E I+ ++VN S Q + Sbjct: 180 EELQRLSELPVIAY-------RSDEHW-RLVNAQGHEREINIRPIVRVNGLESARQLALK 231 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G G+AL PDYI + L+ + D + + YP L + +K F +F Sbjct: 232 GVGVALTPDYIAAPALQSSELIHLFSDWRGRATPYHLVYPSRLTPSIAVKRFIDF 286 >gi|262276331|ref|ZP_06054140.1| transcriptional regulator [Grimontia hollisae CIP 101886] gi|262220139|gb|EEY71455.1| transcriptional regulator [Grimontia hollisae CIP 101886] Length = 298 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 137/289 (47%), Gaps = 13/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F ++ +GS+T A+++ + ++++R+I LE ++ IKL +R AR L LTE G Sbjct: 4 DDLNLFRLIVENGSYTQASKKTGIPVATLTRRIQALEEDIQIKLLHRDARKLALTEAGQS 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S + +L L E SG LR+A ++ +LQ L FL YPDI++ Sbjct: 64 FYDTCSPLLEQLLEATESLSECCHGTSGTLRLAAPSNIAMKMLQPMLSAFLNAYPDIKLD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D ++ P + S++I R+L T+ A+P Y+ + + Sbjct: 124 LSLFSDTTPSHLDDRHAFFKI-GPQRDSTMIARRLHTVRDILVASPEYIASHAPITDATD 182 Query: 186 LDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L KH L+ L+ + E L D+ G S L+V + G GIAL Sbjct: 183 LSKHALLKGWPLMRWRLSNESGEQLCLSDQ--GRFEASELRV-----VRAAAKDGLGIAL 235 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +PD +V+ + L +I+ D T ++ Y + KL+ F +F Sbjct: 236 IPDVLVQKDIQSGELQQILPDWTTEPRDIFLMYHDKTHLPAKLRVFIDF 284 >gi|238894238|ref|YP_002918972.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|262043102|ref|ZP_06016241.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007501|ref|ZP_08305960.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|238546554|dbj|BAH62905.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039553|gb|EEW40685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535447|gb|EGF61917.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 301 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 2/191 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L+ F V +GSFT AA+ L++ +++S+ I LE +G+ L R R +T+T +G Sbjct: 4 FSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTPEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + LE + KP G LRIA ++L L +F+ +PDI+I Sbjct: 64 EYYEKARCLLEDLEEIDASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +K D+ DCAIR P++ S+LI RK+ + A P YL+ P S Sbjct: 124 DLQVADKPADLISGNIDCAIR-GGPMEDSTLIARKIGEATLVTCATPGYLQRYGTPASPD 182 Query: 185 EL-DKHNLITF 194 EL H LI++ Sbjct: 183 ELHHGHRLISY 193 >gi|83646519|ref|YP_434954.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83634562|gb|ABC30529.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 288 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 13/245 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW+ L++ +VA+ GS + AA++L ++ +++ R++ LE E+G KLF R ++G T Sbjct: 2 DWNSLKILALVAQKGSMSGAAKELGVNYTTVFRRMESLENEIGGKLFERGSKGYVATPLA 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 K+ + + E + ++ +PSG ++I ++ L L+ YPDI Sbjct: 62 EKMLVFANRMRDGAEQIERQIVGREFQPSGVVKITAPFNIANRYLPEALRPLAQDYPDIT 121 Query: 124 IQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ N D +++ AD A+R R P LI RK+ +I + A +L+ +P + Sbjct: 122 FEILSSNDDFNLNSRVADIAVRATRSP--PDHLIGRKVASIPWAMFVAESFLERFSQPPT 179 Query: 183 IQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSG 240 + L + LI G ++ + F WL S + + L+ M YC G G Sbjct: 180 LDTLADYPLIGASGSML--NLPAFTWLEK------NHATSIVARCNELTAMSYCAESGHG 231 Query: 241 IALLP 245 IA LP Sbjct: 232 IAFLP 236 >gi|70730993|ref|YP_260734.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345292|gb|AAY92898.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 301 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 12/279 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V SGS + A + L+Q ++ R I LE +G+KLF R G TE Sbjct: 11 WDWYRTFLAVLDSGSLSAAGRAMGLTQPTVGRHIDQLEAALGLKLFTRSFDGFAATEAAL 70 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L ++ + G +RI+ + +G +L L +P + + Sbjct: 71 ELKPYLLQLAAGEAALRRVASSHGAGVQGSVRISASEIIGVEVLPPILATLRQQHPQLVV 130 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L N+ D+ AD A+R+ +P Q + L+ R++ I + +A YL+ PLS++ Sbjct: 131 ELVLSNRADDLLQRQADIAVRMFRPTQEALLV-RRVADIELGLHAHRDYLQQQGTPLSLE 189 Query: 185 ELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H LI F I + + + LA + +S L+ + G GI Sbjct: 190 QLAGHALIGFDRETAFIRRLQQQYPMLAR--------GAFAWRSDSDLAQLAALRAGFGI 241 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 + + +P LVR++ + PS + E L+N+ Sbjct: 242 GACQVRLAEADPRLVRVLAEQFAPSLEAWVAMHEDLRNS 280 >gi|332084583|gb|EGI89777.1| hypothetical protein SB521682_4504 [Shigella boydii 5216-82] Length = 299 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|323494253|ref|ZP_08099365.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311416|gb|EGA64568.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 300 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 12/294 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + +R F ++A+ GSFT AA L +S+S +SRQIS LE+++ + L R R L LTE Sbjct: 4 SLNLADIRSFVLIAQLGSFTKAALALDVSRSHVSRQISNLESQMKVTLLIRTTRTLKLTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120 G ++ + +E + + K G++RI LG++++ +F+ YP Sbjct: 64 AGKLFYQQCEVALNGIEQAVLVAVDDVEKVQGEIRINCVGGYLGEDVIGQIACDFMKQYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + Q+ L + +D+ + D A R+ + + S I RKL+TI M A+P YLK P Sbjct: 124 ETQVHLDFSSHRVDLLEEDFDIAFRMGQ-LDDSGFIARKLMTIEMSTLASPEYLKAKGIP 182 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 ++L+ H +T ++ + + VD E I LQ + +++ + Sbjct: 183 SQPKDLNAHQCLT------GSVKRWGYKHKVDNRDVEVAIKGHLQCKNGRVLVKGALNHQ 236 Query: 240 GIALLPD-YIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P Y V+ D LV + ED PS Y +L+ F +F+ Sbjct: 237 GIIRVPKVYCVEAIDEGKLVEVFEDWHIPSVAFSAIYHRDRYQPKRLRVFIDFV 290 >gi|149921365|ref|ZP_01909819.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis pacifica SIR-1] gi|149817798|gb|EDM77262.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis pacifica SIR-1] Length = 303 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 139/299 (46%), Gaps = 18/299 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA F AA QL +S+++++R +S LE +G++L R +R ++ TE G+ Sbjct: 7 MRVFVAVAECRGFAKAARQLGISRAAVTRAVSTLERSLGVELLSRTSRAVSPTEVGASYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + +P+G LRI +++ GQ + L ++L YP+++ Q + Sbjct: 67 VDCRRILADVDESHAAAAGAHARPTGTLRITSSVLFGQLYVLPILTDYLDAYPEVRAQAL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ++ + D A+RL + + SSL+ ++ + A+P YL+ P ++L Sbjct: 127 FVDRVTNMVAEGIDVAVRLGQ-LPDSSLMATRVGRVRRLICASPAYLERHGTPRRPEDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLGSG 240 +H ++ G E W + GE PR++C ++ + + G G Sbjct: 186 EHRVVVGGGE----GERVEWHLGTEEGAGEERIVRVRPRLAC---STNHAAIAAATSGWG 238 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + + Y V + LV ++ED V+ YP K++AF + R+ Sbjct: 239 LTRVLSYQVGEALEQGRLVAVLEDCEPAPIPVHIVYPGGRHAPAKVRAFVELAAPRLRE 297 >gi|94497500|ref|ZP_01304070.1| transcriptional regulatory protein [Sphingomonas sp. SKA58] gi|94423131|gb|EAT08162.1| transcriptional regulatory protein [Sphingomonas sp. SKA58] Length = 297 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 16/295 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F V SFT AA+ L +S++++S+ ++ LE + LF R +R L LTE G Sbjct: 5 DFEAWAMFAAVVEHRSFTDAAKALSVSKATVSKAVTRLEEHLDTSLFNRTSRRLALTESG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + ++ + + SG +R+ + G + + +F ++P + Sbjct: 65 KRLADHAQRILAEGRAAEEAARDETAELSGVVRLGAPMTFGLLRIAPLVAQFTKMHPLVD 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + IDI D IR+ + SSL R+L +++H A+P YL P Sbjct: 125 IDLHLSDAKIDIVEMGLDATIRIAD-MPDSSLRARRLADVNLHVIASPAYLDARGRPAHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238 +L H+ I + +++P + F+ G+ ++ L +NS +++ G Sbjct: 184 SDLGVHDCICYSNVMPSDVWRFSG-------PGQQVVAVQVRGRLTINSGEAMLPALRDG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA LPD+IV + L I+ D +P ++ P + ++ A +FI Sbjct: 237 IGIARLPDFIVGEALAKGELEEILIDWRSPPVGLHLVTPPSRLRPARVDALIDFI 291 >gi|145698322|ref|NP_417978.2| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|238902610|ref|YP_002928406.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|3916007|sp|P37641|YHJC_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator yhjC gi|145693193|gb|AAC76546.2| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|238862321|gb|ACR64319.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|315618448|gb|EFU99035.1| uncharacterized HTH-type transcriptional regulator yhjC [Escherichia coli 3431] Length = 299 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|330817350|ref|YP_004361055.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327369743|gb|AEA61099.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 295 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 144/295 (48%), Gaps = 22/295 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ LR F VARSGS T AA +L SQS++SR+I LE +G+ LF R G LT++ Sbjct: 1 MDWNDLRYFLSVARSGSLTQAAGELKTSQSTVSRRIGELEGSLGMSLFARSQTGYVLTDE 60 Query: 63 GSKLHRVTSEVYHK---LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G ++ R +V LE +++S P G +R+AT+ +L +L+ + F + Sbjct: 61 GREVLRHAEQVEDSILALERGAAGIEKS---PVGTVRLATSENLATDLVIPAMPAFRERF 117 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P I +++I ++ AD A+R+ +P + +L R++ + Y + YL R Sbjct: 118 PGICLEIITSTVTAELGRREADIALRVVRPTR-GNLKVRRIGHMRYSVYGSRDYL--ARH 174 Query: 180 P-LSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P + + L + I + D +P WLA R E ++ L +S + + Sbjct: 175 PAVDGEPLGGRHFIAWDDGHAHLPAAA----WLA---REHPEAKV-ALVTSSLPTQIAAV 226 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A++PD++ D VR++ S ++ L + +++A +F+ Sbjct: 227 RAGLGLAVIPDFLAVDE-AFVRVVPAERMFSNELWLVTHADLVASARVRAVADFL 280 >gi|241663755|ref|YP_002982115.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240865782|gb|ACS63443.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 294 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 6/259 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R F VAR+G+ AA++L + Q+++ R+I+ LE E+ KLF R + L LT Sbjct: 1 MNWDNGRFFLAVARTGTLRGAAQRLGVDQATVGRRIAALEDELSAKLFLRTSTALVLTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + T + + + +G +R+ATT + + + + +P I Sbjct: 61 GEALIGPAEAMEQAAHTIERRVAGIDDQLAGTIRVATTDTMAATFVLPAIAQLRQRHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + +++ AD A+R +P S LI R++ + YA+ Y+ EP Sbjct: 121 DVVCMASKSIANLTKREADVAVRTLRP-DSPDLIARRIGQMETGIYASRSYVAARGEPEE 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+L+ L P+ + W PI R+ LQ NS L++ + G G+ Sbjct: 180 GTAFAGHDLV----LYPRNEVPWMWEDLCGEPITRGRV-VLQSNSALALCEAVAAGIGMT 234 Query: 243 LLPDYIVKDNPNLVRIMED 261 L + P LVR++ + Sbjct: 235 ELVCRRAQAYPQLVRVLPN 253 >gi|110641678|ref|YP_669408.1| transcriptional regulator [Escherichia coli 536] gi|191172836|ref|ZP_03034372.1| transcriptional regulator, LysR family protein [Escherichia coli F11] gi|300972441|ref|ZP_07171948.1| transcriptional regulator, LysR family [Escherichia coli MS 200-1] gi|110343270|gb|ABG69507.1| hypothetical transcriptional regulator protein [Escherichia coli 536] gi|190906842|gb|EDV66445.1| transcriptional regulator, LysR family protein [Escherichia coli F11] gi|300309165|gb|EFJ63685.1| transcriptional regulator, LysR family [Escherichia coli MS 200-1] Length = 223 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R +T TE G Sbjct: 5 NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVTPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M +P Y P + Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL 208 EL H +C+ + W+ Sbjct: 185 HELQNH----------RCINNVTWI 199 >gi|295095911|emb|CBK85001.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 310 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 129/282 (45%), Gaps = 22/282 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V + +F+ A + +S S +SR I LE +G +LFYR+ R + TE G Sbjct: 12 LLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAIMPTESGHLFV 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + +E + EL E + +PSG LRI + GQ + L L YP + I+L Sbjct: 72 RYARAMAGNMEDARRELDERAREPSGTLRINGPVFFGQRHIAPGLPGLLARYPRLSIELT 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ID D AD R+ + SS R H A+P YL+ P +L Sbjct: 132 LTDDFIDPHRDAADVIFRI-GALTDSSFHARVFGQQFYHLAASPDYLQKHGAPEGPDDLS 190 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSGI 241 +H+ + + G P WL + RP GE P + + N+ +++ + G G+ Sbjct: 191 RHHCLVYRGSSGPN-----RWL--IRRP-GEAWVHYPIVPLMTSNNAETLLIAALGGMGV 242 Query: 242 ALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEA 276 L PD++V + + LV ++ + + T T+ YP A Sbjct: 243 VLFPDWMVSERLKSGELVALLPEMECSINTEPLTIAAIYPNA 284 >gi|206578294|ref|YP_002237000.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206567352|gb|ACI09128.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 305 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 11/282 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF V SG+F AA LH+++S++ + I+ LE +G+ LF R R LT Sbjct: 1 MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + E ++ + LQ + G+LRI+ + GQ + L YP Sbjct: 61 EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPLLFRLSQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L ++ +++ + D A+R+ + SL R L M AA YL+ P Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAVEYLRRQPAP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237 +I L +H T G L ++ + D GE R S L + + +I Sbjct: 181 QTIAGLSEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTGLVQDDFAAIAAAVQQ 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 G GIA LPD++V + L +++ F ++ +PE Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEG 277 >gi|170721871|ref|YP_001749559.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169759874|gb|ACA73190.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 303 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 19/297 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A++GSFT AA L L++S++ + I+ LE + ++L R R L+LT++G + Sbjct: 11 AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGLVAYER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L+ + + + KP+G LR+ + LGQ + L +L +P+++ + Sbjct: 71 WRQILDDLDEVESTMAQRRGKPTGTLRLTAPLSLGQRHVLPVLDAYLKQWPELRADIRFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ P + S L+ R + A+P YL+ P +L H Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPEYLRQHGVPQVPADLYGH 190 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGIALL 244 + I F LI + + W P G EP L ++S +++ G G+ L Sbjct: 191 DKIAF--LIGE--KSMAW--RFHTPEGLHLCEEP--GRLNIDSSEAMLDGARAGFGLIHL 242 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 P YI ++ LV ++ P+ + YP + ++ R FI L W+ Sbjct: 243 PTYITGEDLRAGTLVEVLHAYRPPADPIRVVYPSKRHLSPRV---RGFIDLLVASWE 296 >gi|134295543|ref|YP_001119278.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138700|gb|ABO54443.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 301 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 9/299 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE+ +G++L +R R TLT+ G Sbjct: 5 DLPALETFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E + + + +G LR+ +LG+ + + F +P + Sbjct: 65 AQFHAQVLRILAEIERAETLMSDRRGTVNGMLRVTAPGELGRVRIVPLVAAFQRQHPALT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + S++I R+L H AAP Y+ P Sbjct: 125 VQLMLTDTIVDLLAQDIDVAVRI-GSLADSTMIARELAPNHRVLCAAPSYVATHGLPAHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I GD P+ F+ + + L N + + + G+GIAL Sbjct: 184 ADLRAHRCIVLGDQ-PRTEWRFD---GAHGSVAVDVTAALLTNDGGAARSFALEGAGIAL 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-WK 298 + V D LVR++ P+ ++ YP +++AF F+ + RD W+ Sbjct: 240 KSIWDVDADLDAGTLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVEFLREQLRDAWQ 298 >gi|310765154|gb|ADP10104.1| LysR-family transcriptional activator [Erwinia sp. Ejp617] Length = 292 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 19/287 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFALVAECGSFTAAAVRAGLPKSSVSQRISQLEQALGIRLINRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + ++ PSG+LRI + +G LL F YPD+ +++ Sbjct: 68 VHCQEMLQASERAGMAIERLRDNPSGRLRITSPAGIGATLLARVNTAFQHKYPDVTLEVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ D+ D A+R +P Q SSLI R++ A+P YL + ++L Sbjct: 128 ISDEMCDLVQSRFDVALRTGRP-QDSSLIGRRIGYCQRLLVASPDYLADYPALAHPRQLS 186 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIA 242 H I L+ + E + WL + + L + C L S GI Sbjct: 187 DHRCIAHRAWNEWLLKRNEEYYRWL-----------LPPTHMTDNLVYARECALSSGGIT 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP ++ + LV+++ + ++ YP N+ L F +F Sbjct: 236 LLPRFLSGE--KLVQVLPEWEVEGNELWLVYPSRKLNSPALSRFVDF 280 >gi|307140210|ref|ZP_07499566.1| putative DNA-binding transcriptional regulator [Escherichia coli H736] gi|331644230|ref|ZP_08345359.1| putative transcriptional regulator LYSR-type [Escherichia coli H736] gi|331036524|gb|EGI08750.1| putative transcriptional regulator LYSR-type [Escherichia coli H736] Length = 316 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|167573031|ref|ZP_02365905.1| Transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 302 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 19/306 (6%) Query: 1 MSFDWDKLRVF--YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 + +W F VVA SF AA L +S S++S + LE + ++LF R R + Sbjct: 3 VGVNWGGPATFRGIVVADQRSFRAAARTLGVSPSALSHAMRNLEARLDVRLFNRTTRSVA 62 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 LTE G + R LE E + +PSG +RI+ + + + L++ L F+ Sbjct: 63 LTEAGEQFLRRVRPAIADLEDAVNEAAAAHNRPSGSIRISASENAARPLIRHVLPGFVAA 122 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YPDI ++ ++D + +DI + D IR+ + + + R + A A+P YL + Sbjct: 123 YPDIHVEFVVDTRLVDIVANGFDAGIRVLEDVPRDMIAIRFGPDMRFAAVASPAYLAHHA 182 Query: 179 EPLSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P + +L +H I F G L +E A++D + P L + + ++ Sbjct: 183 PPQAPHDLMRHRCIRFRFESGTLYRWDLEHRGKTASID--VDGP----LTLGNLNLMVDA 236 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIME--DVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291 + G GIA +P+++ ++ L R++ +PSF + YP L+ F + Sbjct: 237 ALEGIGIAWVPEHLAAEHLALGRLVHLLPEWSPSFPGLCLYYPANRHPPTALRLFAQAV- 295 Query: 292 LKARDW 297 RDW Sbjct: 296 ---RDW 298 >gi|126175905|ref|YP_001052054.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|125999110|gb|ABN63185.1| transcriptional regulator, LysR family [Shewanella baltica OS155] Length = 344 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 103/189 (54%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F+ +A +GS AA+ L+L +S++SR++ LE E+ IKLF+R +R +TLT GS Sbjct: 19 EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 78 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +L+ T E+ + SG LRI +L + F+ ++P + ++ Sbjct: 79 FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 138 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I ++ +D+ D A + + + L+ R + T + YA+P YL P + +E Sbjct: 139 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPKTPKE 198 Query: 186 LDKHNLITF 194 ++ HN+ F Sbjct: 199 IEAHNVSMF 207 >gi|258622187|ref|ZP_05717213.1| Transcriptional regulator, LysR family [Vibrio mimicus VM573] gi|258585511|gb|EEW10234.1| Transcriptional regulator, LysR family [Vibrio mimicus VM573] Length = 295 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 17/280 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+IQLI + R + S S L YA+P YL+ P Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTPK 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 ++QEL +HN++ +G+ + + + T RI+ + ++ G Sbjct: 181 TLQELTQHNVLCWGE------QTYREVKTAQ----GKRITLTGNFATTNPEALFYAGKAG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G+ + ++K+ NLVRI+ DV TVY YP+ Sbjct: 231 MGVIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPK 270 >gi|207722572|ref|YP_002253008.1| hypothetical protein RSMK05208 [Ralstonia solanacearum MolK2] gi|206587754|emb|CAQ18336.1| hypothetical protein RSMK05208 [Ralstonia solanacearum MolK2] Length = 298 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 19/212 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V G+F AA +L L+ SSIS+ + LE E+G+ L +R R L+LTE G Sbjct: 6 RMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTEAGRVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V H Q ++ +P+G+LRI +L L L++F+ +P + ++ Sbjct: 66 YEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAVRF 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ D A+R+ + ++ SSL+ R++ AAP YL+ P + Sbjct: 126 ELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPDYLERTGPPTT---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP 218 P+ + D +WL + P+GEP Sbjct: 181 ------------PQALADLDWL--IFTPLGEP 198 >gi|254253984|ref|ZP_04947301.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124898629|gb|EAY70472.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 315 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFARVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGENY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ +E + E + +P+G LR+ + +G + + L + YPD+ I+L Sbjct: 66 LRRCRQILADVERAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHAQYPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P +L Sbjct: 126 SLSQRTPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPARPHDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L W+ ++ P G +I +Q N+ S+ G GI + Sbjct: 186 GAHACLT---LRTPAFPTREWV--LEGPDGVEQIHVAGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + LVR++ I VY YP R F+ K R W Sbjct: 241 LPLYSAIDALRDGTLVRVLPRHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|167579564|ref|ZP_02372438.1| LysR family regulatory protein [Burkholderia thailandensis TXDOH] Length = 320 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + + Y D+ +++ Sbjct: 66 YERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL P +I + Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTIAD 185 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241 L H+ I L+ + D + V P + VN +L ++ VL G+GI Sbjct: 186 LQHHSFIRREPNETLLDAAISDVAAASRV------PLSGNVIVN-HLEGLRVAVLDGAGI 238 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ALL +V ++ LV ++ D + P +Y Y + K+++F +F+ Sbjct: 239 ALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 291 >gi|119900148|ref|YP_935361.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119672561|emb|CAL96475.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 306 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 21/295 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR++ V R F +A +L +S + +S++I+ LE +G KL +R R ++LTEQG Sbjct: 8 EDLRLYCTVVRRRGFAASARELGVSNAYVSKRIALLEDALGAKLLHRTTRSVSLTEQGEV 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + ++ + + P+G LR+ T+ G+N + L YP ++IQ Sbjct: 68 VLQWAQRIVDDVDRLAEAVSAEKMAPAGLLRVCTSSGFGRNRVGPALAALAERYPAVEIQ 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + IR+ ++ LI R++ AAP Y+ P + E Sbjct: 128 LELLDRPVDLIGEGFQLDIRV-GAVREPDLISRRIARNERVLCAAPDYVARHGTPADLAE 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239 L +H I +I + +DF W L D P +G P L N+ + Q+ + G Sbjct: 187 LARHRCI----VIRERDQDFGRWTLTGPDGPETVKVGGP----LSANNGEVVRQWALAGH 238 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFI 290 GI L + V P L R + P++ V+ YP L ++ K++ F+ Sbjct: 239 GIILRSRWDV--GPALARGELVQVLPAYRQEADVWAVYPSRLSSSAKVRVCVEFL 291 >gi|94497612|ref|ZP_01304181.1| transcriptional regulator, LysR family protein [Sphingomonas sp. SKA58] gi|94423029|gb|EAT08061.1| transcriptional regulator, LysR family protein [Sphingomonas sp. SKA58] Length = 297 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 132/288 (45%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F +VA GSF +AA+ L L+ S++SR I+ LE +G+ L R R L LT +G Sbjct: 8 IETFLMVATEGSFANAAKALRLTPSAVSRSIARLEQRLGVTLVRRTTRALALTREGMAYR 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + L E P G LRI + G L L +F YP ++I L Sbjct: 68 DRMMVLLTDMMELETGLGEERGAPRGVLRINASPSFGVEWLIPMLPDFRARYPAVRIDLT 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + AD AIR+ P++ + L +KL M A+P YL P + +L Sbjct: 128 LSDAIVDLVEERADIAIRI-GPLRDTRLRAKKLGHSRMALVASPDYLARRGTPATPNDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + F + ++ +W V R I + P NS + Q V G GIA Sbjct: 187 GHDCLRFS--FRRSVD--SWPFRVGRKIVQLPVEGAYFGNSGEVVRQMAVAGCGIARHGY 242 Query: 247 Y-IVKD--NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + +D + LV I+ D ++ Y + +++AF +F+ Sbjct: 243 FHVARDLKDGRLVEILADYAAGDGEDIHALYAAEDRTAARVRAFLDFL 290 >gi|271500360|ref|YP_003333385.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270343915|gb|ACZ76680.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 296 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GS T AA +L +S+S +R I+ LE +G++L +R R L LT G+ + Sbjct: 7 MQVFVAVADLGSLTAAANKLDISRSMATRYIAALEHWLGVRLLHRSTRSLGLTSVGNDML 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E + +P G +R+A+++ GQ+ L L + YP +LI Sbjct: 67 VRCRQILALSEDMAALSSSGNTEPHGVIRVASSVSFGQSYLAQALGRYRARYPHTTTELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ I ++ + D A+ + +LI + L A+P YL + P + +L Sbjct: 127 LTDRAIKLAEERIDLAVEVTNS-PDPNLIAKPLGRCASVVCASPDYLAHHAPPTTPNDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 +HN + L W T + R+ + N L ++ G GIA L Sbjct: 186 RHNCLNHIRL------GREWRFTHRESGAQHRVMVSGRVVANDTLVLLTAARAGEGIACL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V+ D LV ++ D T + +Y CY L+ +F+ Sbjct: 240 PEFVVRGGLDAGELVPLLGDYQTQALGIYACYMSRRHMPATLRTLLDFL 288 >gi|187919501|ref|YP_001888532.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717939|gb|ACD19162.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 331 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 131/299 (43%), Gaps = 26/299 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + T + E + +PSG LR+ + +GQ+ + + + LYP++ ++L Sbjct: 66 LTRCKQILADVATAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRALYPEVTVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ AD A+ + S L+ L T A+P Y++ P +L Sbjct: 126 TLSQRMPDLFEGSADVAVIGASTLPDSELVSLPLGTTFSIMCASPAYVRAHGAPQQPADL 185 Query: 187 DKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 H LI P +W+ +D P G + + VN S++ G GI Sbjct: 186 AHHECLILHTPAFPP----HDWV--LDGPNGSEMMGVNGPVHVNIAESLIVAIREGMGIG 239 Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y ++D LVR++ + VY YP R F+ K R W Sbjct: 240 MLPLYAAISGLRDG-TLVRVLPEYTAQKMNVYALYPS-----------RKFVDAKTRTW 286 >gi|254469896|ref|ZP_05083301.1| LysR-family transcriptional regulator [Pseudovibrio sp. JE062] gi|211961731|gb|EEA96926.1| LysR-family transcriptional regulator [Pseudovibrio sp. JE062] Length = 301 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 130/276 (47%), Gaps = 18/276 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + +F VA++GSF+ AA+ LH+ S++SR++S LE ++G KL R R + LTE G Sbjct: 3 DLNAIAIFAEVAKAGSFSAAAKNLHVPLSTVSRKVSELEAQLGTKLLERTTRRMRLTEIG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ +++ SG L++ +L + L + +F L YP+++ Sbjct: 63 EQFYKTCLPGLEAFRAADRVVEQRQSALSGDLKVTIPPNLAEALFIPVIGQFRLQYPEVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+I+ +++D D D + R+ P S L KL T A+P Y+ P Sbjct: 123 VQMIVSERNLDFIEDDVDLSFRV-GPKPDSGLTLTKLATYCHVLVASPTYIAEHGVPDHP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237 +L +H LI FG + +W ++ R E P+I +N Y ++ Sbjct: 182 DKLPEHALIGFGFW---QKPEVSW--SLSRKNDERVIRFTPQIG---INDYAAMQSAIKA 233 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270 G GI LP + +D LV ++ D P ++ Sbjct: 234 GLGIGELPSILCQDALAKRALVEVLPDWTFPEIDLH 269 >gi|71280432|ref|YP_268039.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71146172|gb|AAZ26645.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 301 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 131/272 (48%), Gaps = 7/272 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V +GS T AAEQ+++++S++S+++S LE ++GIKL R R ++TE G + Sbjct: 5 EDMYIFLRVVETGSITKAAEQMNIAKSAVSKRLSLLEQKLGIKLINRTTRKSSITEAGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + +++ + S G L IA + G L L FL + D+++ Sbjct: 65 YYQRSKLIIDEVDELNSQTSSSKRALEGTLNIAVPLSFGLTHLAPALDLFLQQHSDLKLN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ IDI D A R+ + + +SSL RK+ I A+P YLK EP + + Sbjct: 125 INFSDQKIDIVEQGVDLAFRIGQ-LDNSSLQARKIAPIKHVLCASPEYLKLQGEPKTPND 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H +I +G+L ++ N EP I + S+ + GI LP Sbjct: 184 LKNHKVIKYGNLDQGGLKLLNKEGEEHIVHFEPHIIANNGDFLKSLAES---NHGITYLP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 +IV + LV ++ D S Y YP Sbjct: 241 SFIVWQSLATKKLVPVLADYKIESMHAYAVYP 272 >gi|309701629|emb|CBJ00936.1| LysR-family transcriptional regulator [Escherichia coli ETEC H10407] Length = 299 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAVRLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|296104327|ref|YP_003614473.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058786|gb|ADF63524.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 295 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 24/301 (7%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V SGSFT AA +L +S + + I+ LE+E+G +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVESGSFTGAASRLDMSSVMVGKYIALLESELGTRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ P+G LR+ G ++ FL YP + Sbjct: 62 GRVYFDEAKRVLEQVAIAESAVERLRAAPAGTLRVTAPTSFGGCVIAPLTATFLQRYPAV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L L N+ +D+ + D AIR+ I++ L+ + L +M A+P YL P + Sbjct: 122 RIELDLTNRMVDLVEEGVDLAIRIGD-IRNDDLVAKYLCPYNMVICASPDYLARHGTPQT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235 +L H C+ W L V+ + R + L+ N + Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAILRCNDGYGLRMAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 G+G+ L P+ +V + + LVR++E V+ + + L+ KL F I L Sbjct: 231 RAGAGLLLQPEVLVAEELASGRLVRVLEPFTPAPRPVHLLWRQDLRPLPKLTEFIAHILL 290 Query: 293 K 293 + Sbjct: 291 R 291 >gi|158422536|ref|YP_001523828.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329425|dbj|BAF86910.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 312 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 141/288 (48%), Gaps = 12/288 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R+ +A + S AAE L ++ S++ R++ LE +G +LF R G T G Sbjct: 4 WDDFRLVKAIAETRSLAGAAEVLGVNHSTVFRRLGALEALLGARLFERARTGYAPTVTGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L R+ + ++ + + + ++PSG+LR+ T L +LL F YP+I++ Sbjct: 64 ELVRLAERMGEEITSIERRITGRDLRPSGELRVTTNDTLLVHLLTPVFASFRAAYPEIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++I+ N+ ++++ AD A+R +P +L+ R++ +I Y A + Sbjct: 124 EIIVSNQTLNLTKRDADVAVRASDRP--GDALVGRRVASIAWGVYGAAGGPDT--RAFEL 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + +HN + F + I ++ WL GE RI +VN+ L + Q G G+A+ Sbjct: 180 AHMRQHNWVGFAEPI-GAIKAAKWL---KERAGEDRI-VYRVNTLLGLAQAAAAGMGLAV 234 Query: 244 LPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +I P L R+ D +P+ +K T +++AF +++ Sbjct: 235 LPCFIGAATPGLTRLQALDAEIDGSLWLLTHPD-IKQTARVRAFMDYV 281 >gi|52426171|ref|YP_089308.1| LysR protein [Mannheimia succiniciproducens MBEL55E] gi|52308223|gb|AAU38723.1| LysR protein [Mannheimia succiniciproducens MBEL55E] Length = 305 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 116/248 (46%), Gaps = 12/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F V GS + A + +LS S +SR I LE + G LFYR+ R +T TE G L Sbjct: 11 LKLFLQVLELGSLSEVARRENLSASMLSRLIKQLEDDWGAALFYRNTRAITPTETGLLLA 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + + + + + +G +RI + GQ + +L E YP++ + L+ Sbjct: 71 EYARQIVSQFQAAEQAITAQTAEIAGTVRINAPVFFGQLHIIPHLAELQARYPNLIVNLV 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ID D D RL P+ SSL R L H A+P YL+ P +L Sbjct: 131 QTDDYIDPFTDSTDIIFRL-APLNDSSLKVRILAQQHFCLAASPSYLQKYGTPKIPADLA 189 Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 KH+ + + G L E NW A P+I+ L N+ +I CV G GIAL Sbjct: 190 KHHALLYKGKTGTLRWLLQEGENWQAC------SPKIA-LTSNNGNAIATACVQGMGIAL 242 Query: 244 LPDYIVKD 251 L ++ D Sbjct: 243 LANWAASD 250 >gi|170696516|ref|ZP_02887640.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170138563|gb|EDT06767.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 306 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 144/302 (47%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AA+ L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 17 NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E +I L+ + + L++ T + + + F YPD+ +Q Sbjct: 77 LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQTEYPDLHVQ 131 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D ++ D AI +QS L + +L + AP LK+ +P Sbjct: 132 ITTTWQHDVDFQLEPFDAAIIYGSSPGADVQSVPLFEERLTPV-----CAPDLLKD--KP 184 Query: 181 L-SIQELDKHNLITFGDLIPKCMEDFN-WLATV-------DRPIGE---PRISCLQVNSY 228 L S+ +L +H L+ + D+ WLA V R I P L + + Sbjct: 185 LASVADLARHTLLHPT----RDHRDWKMWLARVAEADPADARAIDAEHGPSFDTLDMATN 240 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 ++ + V S +AL+ + + LVR + V+ + YF YP+++ + KL FR+ Sbjct: 241 AALQGFGVAISDLALIDEDVAAR--RLVRPFDTVLKTGWRYYFVYPDSVAHQHKLSLFRD 298 Query: 289 FI 290 +I Sbjct: 299 WI 300 >gi|161519952|ref|YP_001583379.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353871|ref|YP_001949498.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344002|gb|ABX17087.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189337893|dbj|BAG46962.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 304 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 19/292 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F AAE + ++ +SR I+ LE + ++LF R R ++LTE+G + + Sbjct: 14 VFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNVRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + GKLRI + + +L L F+ +P+++I+ I Sbjct: 74 VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187 + D+ MD D A+R +P ++S+LI RKL+ + AAP Y+ P ++L+ Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-KASTLIARKLLDSRIVTVAAPSYVARWGRPAKPEDLEGR 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 +H + F + P+ + F W R RI L VN +++ C+ GSGIA Sbjct: 193 RHRCLEFRN--PETGKPFQWEFHRKR----KRIVVNTQGRLTVNDPGALLNACLAGSGIA 246 Query: 243 ----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + ++ D L+ + + + + +Y Y K +AF +F+ Sbjct: 247 QMLLLGAEPLIADG-RLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFV 297 >gi|300716897|ref|YP_003741700.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299062733|emb|CAX59853.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 294 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 5/260 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS ISR + LE +G++L R R L+LT+ G Sbjct: 6 NYNELYLFMQVVREGSFTAAAQRLGLAQSGISRSVRELEERLGVQLLVRTTRRLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ + L + L PSG +RI + +L L F YPDI+ Sbjct: 66 EQLYKTAETGFDALNSGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAIFQQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D IRL + + R + M A P + + P + Sbjct: 126 LELISESRFVDIIAERFDAGIRLGPEVGQGMIAVRITPDMEMAIVATPEHFRRYGFPQTP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L H I + L + + + P+ +SY+ + G G+A Sbjct: 186 EDLVAHPCIAY-QLADGSVYAWELNQQAKKITHRPQGQWAFSDSYME-AEAARRGLGLAY 243 Query: 244 LPDYIVKDN---PNLVRIME 260 +P+ +V D+ LVR+++ Sbjct: 244 VPEELVSDDLQRGRLVRVLQ 263 >gi|291617153|ref|YP_003519895.1| YafC [Pantoea ananatis LMG 20103] gi|291152183|gb|ADD76767.1| YafC [Pantoea ananatis LMG 20103] Length = 287 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 16/248 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 R VA SF AA+ + L+ S++++ I LE ++ ++LF R R +T+TE+G Sbjct: 11 FRAVIKVAEKQSFKLAAQSMGLTPSAVAKSIQRLEEQLAVQLFIRSTRSVTITEKGRLFL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +LE + EL + P+G L++ + L +L F +PDIQ+ + Sbjct: 71 ERCRHVMSELEAAEAELNQGKHSPAGLLKVG--LPDASELFTESLFAFTEAFPDIQLDID 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI + D IR P+ S L RKL + A+P YL+ EP I EL+ Sbjct: 129 FSDRFVDIIGEGFDAVIRTGAPVD-SRLKYRKLNDFNWMYVASPEYLQTMNEPTEIHELE 187 Query: 188 KHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ L G L P W +VD + + S ++ V G GIA Sbjct: 188 YHHCLRQRLSHTGRLAP-------WFRSVDDEYTHAPATLISSKSAF-LIDLAVRGKGIA 239 Query: 243 LLPDYIVK 250 +LP +K Sbjct: 240 MLPSLSIK 247 >gi|260568564|ref|ZP_05839033.1| LysR substrate binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|260155229|gb|EEW90310.1| LysR substrate binding domain-containing protein [Brucella suis bv. 4 str. 40] Length = 297 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G +L R R +LTE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +++ Q + E+S G+++++ ++ +L +F L +P+I + + Sbjct: 66 YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ + +Q SSLI ++L H AP + +P ++L Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPKLIARVGKPQRPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + ++++ + P +++NS ++ + G G +LP Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I +D L+ +++ I +Y YP K++A +F+ Sbjct: 243 FIAEDEIEQGRLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289 >gi|167619006|ref|ZP_02387637.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 294 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 13/288 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR G+ + AA +L + +++ R+++ LETE+ +L R AR TLT Sbjct: 2 FDWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQTRLVERFARHCTLTGV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + S + + +Q + +G + ++ L N F YP I Sbjct: 62 GRRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L + + +S AD A+RL +P ++ +++ R++ + YAA Y P Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEADNVV-RRIGAMEFALYAARRY------PY- 173 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +QE + + + D M WL V G+ I+C ++ S G+GI Sbjct: 174 LQEPARWEFVGYDDPFDD-MPQQRWLKKV---AGKRAIAC-RLGDITSQYAATRAGAGIG 228 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + +LV + D + ++ LK + ++A +FI Sbjct: 229 MLPRFLPAASDDLVELDVDAEPFARDIWLVVHRQLKASPPIRAVMDFI 276 >gi|325522808|gb|EGD01283.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 320 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 10/293 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ +SV P G+LR+ + G + + ++ + D+ +++ Sbjct: 66 YERLVQALSELDEAGQAGGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFSDVTVEI 125 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL P +I + Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPAYLDKHGTPETIAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 L HN + N A R +S + ++L ++ VL G+GIALL Sbjct: 186 LAHHNYLRRDSNATMLDSMLNDAAAASRVT----LSGNLIVNHLEGLRAAVLGGAGIALL 241 Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +V D+ LV ++ D I P +Y Y + K+++F +F+ + Sbjct: 242 GTEVVGDDIESGRLVPVLIDAIPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294 >gi|213052821|ref|ZP_03345699.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 299 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 124/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 7 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 67 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 186 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 SGI P V++ L+ I+ V YP Sbjct: 236 SGIIQTPRIAVREALRAGALIEILPQYRAAPLPVTLHYP 274 >gi|162148552|ref|YP_001603013.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787129|emb|CAP56719.1| putative transcriptional Regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 294 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 11/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + F V +GSF+ AA QL + Q ++S+ ++ LE + + L R GLT TE G Sbjct: 4 YQAMTTFVRVLETGSFSAAARQLGVGQPAVSKTVAQLEARLQVSLLIRTTHGLTPTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + +S+ SG+LR++ + + L FL +P + + Sbjct: 64 NFYERARNAIQEADEAELAAKGASIGLSGRLRVSAATTFSRLHVIPKLPAFLAAHPQLDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +LD++ ID+ + D ++R+ + S+ + RK+ T A P YL P Sbjct: 124 DFLLDDRMIDLVAEGVDISLRM-GALSDSTAVVRKVATGRRSVIATPAYLARAGVPRHPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H+ + + L P W T D +S L+V++ + + G+ + Sbjct: 183 DLANHDTVIYSQL-PSV-----WSFTRDGAAVSVSVSGRLRVSAAEGLRAAILADMGLTI 236 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D++ + +VR++E P ++ +P T K + F F+ Sbjct: 237 TSDWMFAPELERGAVVRVLEGWSLPPIDLWAVFPAGRMMTAKARQFAGFV 286 >gi|89110492|ref|AP_004272.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|170083032|ref|YP_001732352.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|194435605|ref|ZP_03067708.1| transcriptional regulator, LysR family [Escherichia coli 101-1] gi|254038699|ref|ZP_04872755.1| transcriptional regulator [Escherichia sp. 1_1_43] gi|256025754|ref|ZP_05439619.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|300950858|ref|ZP_07164740.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300955004|ref|ZP_07167414.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|301028223|ref|ZP_07191492.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|466658|gb|AAB18497.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655] gi|85676523|dbj|BAE77773.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|169890867|gb|ACB04574.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|194425148|gb|EDX41132.1| transcriptional regulator, LysR family [Escherichia coli 101-1] gi|226839205|gb|EEH71228.1| transcriptional regulator [Escherichia sp. 1_1_43] gi|260447464|gb|ACX37886.1| transcriptional regulator, LysR family [Escherichia coli DH1] gi|299878709|gb|EFI86920.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|300318046|gb|EFJ67830.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|300449834|gb|EFK13454.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|309703927|emb|CBJ03268.1| LysR-family transcriptional regulator [Escherichia coli ETEC H10407] gi|315138097|dbj|BAJ45256.1| predicted DNA-binding transcriptional regulator [Escherichia coli DH1] gi|323959452|gb|EGB55109.1| LysR substrate binding domain-containing protein [Escherichia coli H489] gi|323971379|gb|EGB66618.1| LysR substrate binding domain-containing protein [Escherichia coli TA007] Length = 323 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|320182581|gb|EFW57471.1| LysR family transcriptional regulator YhjC [Shigella boydii ATCC 9905] Length = 323 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|300719020|ref|YP_003743823.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299064856|emb|CAX61976.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 292 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW L F + R GS + AA++LH+ +++SR+I+ LE +G++L R R LTEQ Sbjct: 1 MDWQDLHYFLALVRRGSMSAAAKELHVDHATVSRRIAALERSLGLRLTERLPRRTALTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V E+ + +I+ S P+ +R++ + + L+ + +F +P+I Sbjct: 61 GKVIASVAEEMNRVSDRVKIQATSLSAAPAAVIRVSASPAVAALLIAPAVADFTQTHPNI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L + + ++ AD A+RL +P + L+ R++ T+ YA+P + R P S Sbjct: 121 SLSLSGASHQVQLNKGEADIAVRLTRP-EDPDLLTRRIGTMRFGLYASPSW--QDRPPES 177 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L + + + WL ++ + RI + + ++ Q G G+ Sbjct: 178 WLFLGYETSLDY-------VTQQKWLESL---LNGRRI-IFRASDLMAQQQAARSGLGVV 226 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLK 284 LP ++ ++ +L+++ D P +++ YPE ++ ++ Sbjct: 227 TLPCFMGDNDSSLIKLAVDSPPPGRSMWLVAYPEYRRDPSAVR 269 >gi|296102449|ref|YP_003612595.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056908|gb|ADF61646.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 313 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 114/256 (44%), Gaps = 15/256 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + L++F V + +F+ A + LS S +SR I LE +G +LFYR+ R + TE Sbjct: 6 SMNLRSLKIFIAVFEAENFSVVARREGLSASQVSRIIHQLEDALGQQLFYRNTRAVIPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G R E+ E + EL S +PSG +RI + GQ + L + YP Sbjct: 66 SGHLFIRYAREMMTSFEEARRELDARSTEPSGTIRINAPVFFGQRHIAPGLPDLTARYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+L L + ID + AD R+ + S+ R H A+P YL+ P Sbjct: 126 LNIELTLTDDFIDPHKNAADVIFRI-GVLTDSTFHARIFGQQRYHLAASPDYLRQHGAPQ 184 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYC 235 +L H + + G P WL R GE P + + N+ S++ Sbjct: 185 GPDDLAHHKCLVYRGSSGPN-----RWLL---RGAGEEWVHYPVMPLMTSNNAESLLAAA 236 Query: 236 VLGSGIALLPDYIVKD 251 + G GI L PD+++ D Sbjct: 237 LGGMGIVLFPDWLIGD 252 >gi|206576853|ref|YP_002238916.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|290509881|ref|ZP_06549252.1| transcriptional regulator [Klebsiella sp. 1_1_55] gi|206565911|gb|ACI07687.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|289779275|gb|EFD87272.1| transcriptional regulator [Klebsiella sp. 1_1_55] Length = 294 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 13/264 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+ + L+ L PSG +RI + +L L F YPDI+ Sbjct: 66 EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + S + R + M P + + P + Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H I FGD + W VD + P+ +SY+ + LG Sbjct: 186 ADLVAHPCIAYQFGD-----GSLYAWELNVDGKKITHPPQGQWAFADSYME-AKAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIME 260 G+A +P+ ++ D+ L+R+++ Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQ 263 >gi|269102879|ref|ZP_06155576.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268162777|gb|EEZ41273.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 300 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 8/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE +++S +S++IS LE+E+GI+L YR R LT+TE G Sbjct: 5 DDLVLFTQVIEHGSFSKVAELNSITKSVVSKRISKLESELGIQLIYRTTRKLTITEAGEV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + ++ + S SG ++++ G+ LL ++ EF +P + + Sbjct: 65 LYHRAKSISQVAQSAFDAVTGYSEALSGTIKMSVPTISGELLLAESVSEFCKKHPGLTVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN +D+ D IR ++ SSLI R + A+P YL P + ++ Sbjct: 125 MSLDNHFVDLVAGNFDLVIRTGY-LEDSSLIARHIFNSRWVLCASPEYLAQHGIPNTPKD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +HN + + + F+W + + R++ ++ ++ + + G+GIA L Sbjct: 184 LLRHNCLGYNH---QASGSFDWQFIRNDEVYTLRVAGNFSSDNAAALKKVALAGNGIAYL 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V D N LV I+ + +Y YP K +++A Sbjct: 241 PTCLVYDELHNEKLVEILSEHAGKVVGIYAVYPYTKKPAKRIQAL 285 >gi|242237911|ref|YP_002986092.1| LysR family transcriptional regulator [Dickeya dadantii Ech703] gi|242129968|gb|ACS84270.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703] Length = 297 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 10/243 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F SGSF A+ +L +S S++ + ++ LE+ +G++L R R L+LT++G + Sbjct: 12 AFVKAVESGSFASASARLGISASAVGKSVARLESTLGVRLLNRSTRQLSLTDEGQLFYER 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + LE TQ L + + P+G+LRI+ +G +L L +F+ YPDI++ L Sbjct: 72 ARRIAVDLEETQFALAQLTGNPAGRLRISLPA-IGYRMLLPCLPQFVSHYPDIELDLDFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR ++ S L R+L + + AAP YL+ P + Q+L +H Sbjct: 131 DRLVDVIGEGVDVAIR-SGTLEDSQLRSRRLGSYRLLLVAAPDYLQRYGAPTTPQQLSQH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDY 247 + + + + W D P + +S V S L + + G GIA +PD+ Sbjct: 190 RCLHY--RFSRTGQLMQW----DIPGVAMAALSEKLVFSNLEAQLSATIQGLGIAYVPDF 243 Query: 248 IVK 250 V+ Sbjct: 244 AVR 246 >gi|21233148|ref|NP_639065.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770088|ref|YP_244850.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21114995|gb|AAM42977.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575420|gb|AAY50830.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 310 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 26/306 (8%) Query: 1 MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+ D +D ++ F V SGSFT AA+ L +S++++++ + LE + + L R R + + Sbjct: 1 MAMDRFDAMQAFARVVESGSFTKAADTLQISRATVTQLVQQLEARLRVTLLNRTTRRVAV 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G+ + + ++ + L +S P G+LR+ L + +L L +F Y Sbjct: 61 TADGAAYYERVVRLLADMDDAETSLSVASSVPRGRLRVDVPSPLARLILMPALPDFHARY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PDIQ+ + ++ +D+ + DC +R I SL+ R + + YAAP YL Sbjct: 121 PDIQLHMGASDRRVDLIGEQIDCVVR-GGTITDQSLVARHVGDLQAGVYAAPGYLARLGM 179 Query: 180 PLSIQELD--KHNLITF---GDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSY 228 P +EL+ H + F GD +P W + R G ++ N+Y Sbjct: 180 PAHPRELEDTAHRTVGFMRWGDGVP-------WPLVMQRDGEHVQVHGRYVVASDDGNAY 232 Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 L+ + G G+ LP Y+ + L+ + D + +P + KL+ Sbjct: 233 LAA---GLAGMGVLWLPQYMARAPLSRGELLPVFADWQLDPMPLSIAFPPNRHVSAKLRV 289 Query: 286 FRNFIF 291 F +++ Sbjct: 290 FIDWVI 295 >gi|33601728|ref|NP_889288.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33576165|emb|CAE33244.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 308 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 134/293 (45%), Gaps = 12/293 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F ++GSFT AA L +++S++ + ++ LE +G++L +R R L +T +G + Sbjct: 11 AFVSAVKAGSFTSAAATLGVTRSAVGKSVARLEARLGVRLLHRTTRKLNVTGEGLVVFER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S++ LE + + KP+G LR+ + GQ + L ++ +P+IQ + Sbjct: 71 WSQILEDLEEVDATMAQRRGKPAGILRLTAPLSFGQRHILPILNAYVTNWPEIQADVWFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D A+R+ + ++ R + AAP YL P + +L H Sbjct: 131 DHYVDLIEEGIDVAVRIGGVKDDARILSRTIGGQQFVTCAAPGYLAKKGVPSTPADLAGH 190 Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I F +P + + + D P + ++S ++ + + G G+ LP Sbjct: 191 DTIFFLSGQRPMPWRLGQGDAIEVCDGP------GRMNIDSSEALREAALSGFGLIHLPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 YI + +LV ++E P+ + YP + + +AF + + + RD Sbjct: 245 YITGKDLQRGDLVEVLEAYRPPADPIRLIYPSKRHLSPRTRAFIDLLIERWRD 297 >gi|330820400|ref|YP_004349262.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327372395|gb|AEA63750.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 305 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 21/300 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF AA L +S S++S + LE +G++LF R R + LTE G L Sbjct: 8 ELTAFVAIAEQRSFRAAARALAVSPSALSHSMRSLEARLGVRLFNRTTRSVALTEAGEHL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R LE E+ + +P+G +RI + + L++ L EFL YPDI ++ Sbjct: 68 LRRVGPALSDLENAVDEVATAQNRPTGSVRINASETSTRILIRDVLPEFLQRYPDIHVEF 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + IDI D D IR+ + + R + A A+P YL P +L Sbjct: 128 VTETRLIDIVADGFDAGIRVFDDVPRDMIAVRFGPDMRFVAVASPDYLARHPAPTRPADL 187 Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H I + G + + +++D + P + + + S+++ + G G+A Sbjct: 188 MQHRCIRYRFESGAMFRWDFQSNGKTSSLD--VEGP----MTLGNLNSMIEAALAGIGVA 241 Query: 243 LLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P+ +V + + LV ++ D V P +Y YP L+ F + RDW Sbjct: 242 WAPESLVSEHLASGRLVALLRDWSVSLPGLALY--YPANRHPPAPLRLFVQAV----RDW 295 >gi|317405133|gb|EFV85476.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 354 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 146/291 (50%), Gaps = 11/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L L +++++ I LE +G++L R R + LT G+ Sbjct: 4 FQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +E T+ QE++++ G+LRI +G+ +L +L +F YPD+++ Sbjct: 64 GYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPDVEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC IR ++ SSL+ R++ T+ A+P Y+ P +I+ Sbjct: 124 VLGIGDRPVDMVQEAVDCVIRAGD-LEDSSLVARRIGTLQTVTCASPTYVARHGMPQTIE 182 Query: 185 ELDKHNLI-TFGDLIPK-CMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 EL H+ + F + C DF +D E + + VN + + + G G+ Sbjct: 183 ELRNHHAVHCFSSRTGRNCAWDFK----IDGKHQEVDMRGTVAVNEAGAYLDCGLKGFGL 238 Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P Y+ + L+ ++ + + YP++ + + K++AF ++ Sbjct: 239 IQTPRYMALPYLQSGELIEVLPQWKPSATAISVLYPQSRQLSPKVRAFADW 289 >gi|239995733|ref|ZP_04716257.1| probable transcriptional regulator, LysR family protein [Alteromonas macleodii ATCC 27126] Length = 301 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VVA GSFT AAE+L S +S+ ++ LE ++ +LF R R + LTE G + Sbjct: 7 LKTFCVVANEGSFTKAAEKLDTSNQLVSKYVAELEKQLDTRLFNRTTRKIHLTEAGQQCL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + +L + + G L ++ + L L F +P + I L Sbjct: 67 QHANHILESVTDMESQLGLLNTEAKGVLHVSAPVSFSTLHLASALSAFQQAHPHVSINLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ ID+ + D AIR + +SSL+ +K+ TI + A+P YL+ P EL Sbjct: 127 LNDRKIDVIDEGFDVAIRAGH-LANSSLVAKKITTIKLALCASPAYLEKYGTPQHPAELK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + + D + L + + L N+ + G G L P + Sbjct: 186 PEHYLEYSYV--NYDNDKSALIAALKANAQTVTPKLTANNGEVLTNVAKQGEGYVLQPTF 243 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + N LV I++D + + ++Y YP + KL+ F +F+ Sbjct: 244 IAGEALKNGELVSILDDFVPQAISLYAVYPHRKLISNKLRVFIDFL 289 >gi|207744826|ref|YP_002261218.1| hypothetical protein RSIPO_03040 [Ralstonia solanacearum IPO1609] gi|206596236|emb|CAQ63163.1| hypothetical protein RSIPO_03040 [Ralstonia solanacearum IPO1609] Length = 291 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/300 (23%), Positives = 132/300 (44%), Gaps = 27/300 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +G+FT AA QL +S + + + LET +G +L R R +LT+ G + Sbjct: 1 METFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDAGRVFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V ++ + ++ +PSG LR++ G ++ F +P ++++L Sbjct: 61 DDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQVRVELD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D++ + D A+R+ P+ + L+ + L M A+P YL +P + +L Sbjct: 121 LSNRMVDLADEGFDLAVRI-GPLGDADLVAKPLCAYRMAICASPDYLARHGQPETPADLP 179 Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIG---EPRISCLQVNSYLSIMQYCVL 237 H +C+ W L+ D P +P SC N + + Sbjct: 180 AH----------RCLSHMVWNRRNAWQLSGWDGPTSWRDDPAFSC---NDGHGLRMAAIA 226 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G+G+ L P+ +V ++ LVR+++ ++ Y + + KL F + + A Sbjct: 227 GAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDHLLQHA 286 >gi|161616386|ref|YP_001590351.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|213160819|ref|ZP_03346529.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428316|ref|ZP_03361066.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586678|ref|ZP_03368504.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|289829154|ref|ZP_06546809.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|161365750|gb|ABX69518.1| hypothetical protein SPAB_04195 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|312914395|dbj|BAJ38369.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225211|gb|EFX50270.1| Transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614508|gb|EFY11438.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618270|gb|EFY15161.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625983|gb|EFY22797.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626753|gb|EFY23550.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631321|gb|EFY28081.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635412|gb|EFY32126.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643412|gb|EFY39976.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647019|gb|EFY43520.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649748|gb|EFY46175.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655578|gb|EFY51884.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658392|gb|EFY54657.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664384|gb|EFY60580.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667396|gb|EFY63558.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674644|gb|EFY70736.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675725|gb|EFY71798.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682361|gb|EFY78384.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684774|gb|EFY80775.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196148|gb|EFZ81308.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196714|gb|EFZ81859.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204351|gb|EFZ89360.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207699|gb|EFZ92646.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210011|gb|EFZ94916.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214274|gb|EFZ99027.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219048|gb|EGA03554.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225029|gb|EGA09282.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230381|gb|EGA14500.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233357|gb|EGA17451.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239394|gb|EGA23444.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242355|gb|EGA26381.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247291|gb|EGA31256.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250381|gb|EGA34265.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256829|gb|EGA40544.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263887|gb|EGA47406.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264092|gb|EGA47600.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271649|gb|EGA55068.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 303 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 4/247 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLM 236 Query: 248 IVKDNPN 254 V D N Sbjct: 237 WVIDEIN 243 >gi|89900015|ref|YP_522486.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344752|gb|ABD68955.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 309 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 14/301 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F +G FT AA ++ L+ S++S+ ++ LE +G +L R R L LT +G Sbjct: 6 EMTAFVRAVETGGFTAAAREIGLTPSALSKLVTRLEDRLGARLLQRTTRRLQLTSEGEAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + E+ ++ + P G LR+ G + L + F LYPD+Q+ + Sbjct: 66 YARARPILLAMDEAEAEVSQAGLSPRGLLRLQCGTAFGMHQLARTIPHFQALYPDVQLDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ + D IR P+ SS++ R++ T+ AAP YL P + +L Sbjct: 126 TISDRPPADMKEGIDLTIRT-GPLDDSSMVARRICTLERVICAAPSYLALHGTPRTPDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN + +L P W + I I + N+ +++Q V G GI L Sbjct: 185 QRHNCLWISNL-PALR---RWPFDTEDGIRVVHIGGNVVANNAETVLQLAVAGVGITRLT 240 Query: 246 DYIVK---DNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298 + IV LV I+ D + P ++ YP K++A +F+ F K D + Sbjct: 241 NVIVSAAIARRELVPILTDWHHVEP-VPLFASYPSGRNLAPKVRAMVDFLVDFFKDSDQQ 299 Query: 299 F 299 F Sbjct: 300 F 300 >gi|82779555|ref|YP_405904.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae Sd197] gi|309787517|ref|ZP_07682129.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella dysenteriae 1617] gi|81243703|gb|ABB64413.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae Sd197] gi|308925095|gb|EFP70590.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella dysenteriae 1617] Length = 291 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 9/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G ++ Sbjct: 1 MFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQR 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 61 AKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSH 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI D DC IR + +I R L + M A+PHYL P S +L H Sbjct: 121 DRPVDILHDGFDCVIR-TGALPEDGVIARPLGNLTMVNCASPHYLTRFGYPQSPDDLTSH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 ++ + + F +A+V+ L VNS + + + G GI +P V Sbjct: 180 AIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRIAV 238 Query: 250 KDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 ++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 239 REALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 282 >gi|262164661|ref|ZP_06032399.1| transcriptional regulator LysR family [Vibrio mimicus VM223] gi|262027041|gb|EEY45708.1| transcriptional regulator LysR family [Vibrio mimicus VM223] Length = 295 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 17/280 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+IQLI + R + S S L YA+P YL+ P Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTPK 180 Query: 182 SIQELDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++QEL +HN++ +G+ K + T + P ++ G Sbjct: 181 TLQELTQHNVLCWGEQTYREVKTAQGKRVTLTGNFATTNPE----------ALFYAGKAG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G+ + ++K+ NLVRI+ DV TVY YP+ Sbjct: 231 MGVIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPK 270 >gi|207738586|ref|YP_002256979.1| hypothetical protein RSIPO_03278 [Ralstonia solanacearum IPO1609] gi|206591954|emb|CAQ58860.1| hypothetical protein RSIPO_03278 [Ralstonia solanacearum IPO1609] Length = 298 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 19/212 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V G+F AA +L L+ SSIS+ + LE E+G+ L +R R L+LTE G Sbjct: 6 RMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTEAGRVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V H Q ++ +P+G+LRI +L L L++F+ +P + ++ Sbjct: 66 YEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAVRF 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ D A+R+ + ++ SSL+ R++ AAP YL+ P + Sbjct: 126 ELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPAYLERTGPPTT---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP 218 P+ + D +WL + P+GEP Sbjct: 181 ------------PQALADLDWL--IFTPLGEP 198 >gi|191165306|ref|ZP_03027149.1| transcriptional regulator, LysR family [Escherichia coli B7A] gi|193061785|ref|ZP_03042882.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|194428655|ref|ZP_03061192.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|218556071|ref|YP_002388984.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218697230|ref|YP_002404897.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|256020868|ref|ZP_05434733.1| putative DNA-binding transcriptional regulator [Shigella sp. D9] gi|260846310|ref|YP_003224088.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|260857625|ref|YP_003231516.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|300815264|ref|ZP_07095489.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300822084|ref|ZP_07102227.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300907584|ref|ZP_07125220.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300916752|ref|ZP_07133463.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300922345|ref|ZP_07138467.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|301306827|ref|ZP_07212877.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|301326666|ref|ZP_07219993.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|307314351|ref|ZP_07593958.1| transcriptional regulator, LysR family [Escherichia coli W] gi|309796158|ref|ZP_07690569.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|331670352|ref|ZP_08371191.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] gi|331679598|ref|ZP_08380268.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|332282082|ref|ZP_08394495.1| conserved hypothetical protein [Shigella sp. D9] gi|190904708|gb|EDV64414.1| transcriptional regulator, LysR family [Escherichia coli B7A] gi|192932575|gb|EDV85172.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|194413238|gb|EDX29523.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|218353962|emb|CAV00420.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218362839|emb|CAR00469.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|257756274|dbj|BAI27776.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257761457|dbj|BAI32954.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|300400701|gb|EFJ84239.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300415974|gb|EFJ99284.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300421285|gb|EFK04596.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300525447|gb|EFK46516.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300532156|gb|EFK53218.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300837946|gb|EFK65706.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|300846670|gb|EFK74430.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|306906066|gb|EFN36586.1| transcriptional regulator, LysR family [Escherichia coli W] gi|308120219|gb|EFO57481.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|315062800|gb|ADT77127.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315252578|gb|EFU32546.1| LysR substrate binding domain protein [Escherichia coli MS 85-1] gi|323376612|gb|ADX48880.1| transcriptional regulator, LysR family [Escherichia coli KO11] gi|323944482|gb|EGB40555.1| LysR substrate binding domain-containing protein [Escherichia coli H120] gi|324021177|gb|EGB90396.1| LysR substrate binding domain protein [Escherichia coli MS 117-3] gi|324116608|gb|EGC10525.1| LysR substrate binding domain-containing protein [Escherichia coli E1167] gi|331062414|gb|EGI34334.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] gi|331072770|gb|EGI44095.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|332104434|gb|EGJ07780.1| conserved hypothetical protein [Shigella sp. D9] Length = 323 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|163793590|ref|ZP_02187565.1| regulatory protein, LysR:LysR, substrate-binding [alpha proteobacterium BAL199] gi|159181392|gb|EDP65907.1| regulatory protein, LysR:LysR, substrate-binding [alpha proteobacterium BAL199] Length = 305 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 129/274 (47%), Gaps = 17/274 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A + SFT A QL +S S+I + ++ LE +G++LF+R R + LT +G+ Sbjct: 7 LNAFVQAADARSFTAAGRQLGVSSSAIGKAVARLEERLGVRLFHRSTRAIALTPEGALFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + + E ++E+ ++ P G+L + ++ L L+ + F+ YP+I+++L Sbjct: 67 RRCRRILSEAEDAELEIAQTQGAPRGRLNV--SLPLAGILMMPAISAFMHAYPEIELELD 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D IR + I S L+ R L T + +P Y + P + +L Sbjct: 125 FSDRLVDVIDEGFDAVIRAGE-IGDSRLMSRTLGTFQLRLVGSPVYFASKGYPQNPDDLK 183 Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H + T G L ++ +D P N+ ++ G GIA Sbjct: 184 QHACLQHRYATSGKLERWPLQHKGEALDLDLP------KTAVANTIDPLIHLAEQGLGIA 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 LPD+ ++ N NLV +++D I S CY Sbjct: 238 CLPDFAIRRQLANGNLVTVLDDHIQHSPARSECY 271 >gi|156932763|ref|YP_001436679.1| hypothetical protein ESA_00553 [Cronobacter sakazakii ATCC BAA-894] gi|156531017|gb|ABU75843.1| hypothetical protein ESA_00553 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 43/311 (13%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V + SFT AA L +++ +S I LE+E+G+ L R R LTLT+ G +L Sbjct: 6 RLAMFVAVVDAKSFTGAAAALGQTKAVVSFNIRQLESELGVTLLLRSTRRLTLTDAGERL 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + ++Q S SG+LR+ TT + +++ L F +P ++I+ Sbjct: 66 YQRSLVLLKDADALLDDVQASHDGFSGELRVTTTPEYATHVVGPALAAFSRAHPALRIRH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ D+ + D AIRL +Q S+ + + A+P +L+ R P+S Sbjct: 126 FSSSQHADLISERVDVAIRL-GTLQDSAYRAALISRFDIFPVASPAWLE--RHPIS---- 178 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP------------------RISCLQVNSY 228 P + +WL V + P R + + Sbjct: 179 -----------TPGALSQADWL--VHTRLASPLRWELTGPHNETLWFEITRPPVIAADGA 225 Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 ++M + + G G+ALLP ++VK + LVR++ P+ VY YP+A +GK++ Sbjct: 226 GALMTFALEGCGVALLPAWLVKTALEEGRLVRLLPAYRFPAQGVYAVYPDARHVSGKVRG 285 Query: 286 FRNFIFLKARD 296 F + FL+AR+ Sbjct: 286 FID--FLRARE 294 >gi|15887611|ref|NP_353292.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155154|gb|AAK86077.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 296 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 19/298 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L V VA SF AA +L ++ S++S +S LE +G++L +R R ++ TE+G +L Sbjct: 8 QLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGRQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ L E +P+G LRI ++L+ L EFL LYPDI +++ Sbjct: 68 LETLGPALADIDAVIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLYPDISLEI 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 D++ DI D +RL + + + + + AP Y P ++L Sbjct: 128 STDDRFEDIVAKGFDAGLRLGEHLDADMIAVKASGAWRGAIVGAPAYFAENAPPREPRDL 187 Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGS 239 +H I LI + W + G+P + +Q LS I + + G+ Sbjct: 188 IRHRCIRRRFSSGLI------YRWELEKN---GKPLVVDVQGPLILSDQSLIRRAAIDGA 238 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G+A + + V+++ L+R++ED P Y YP + L+AF +F + Sbjct: 239 GLAFVFEQRVEEDIAEGRLIRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG 296 >gi|323491566|ref|ZP_08096745.1| LysR family substrate binding transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323314142|gb|EGA67227.1| LysR family substrate binding transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 302 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 130/289 (44%), Gaps = 9/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++ +F VA+ SF+ AAE L +S+S +S QI LE E+ L R R + LT G Sbjct: 8 FERYALFGEVAKQLSFSKAAENLGISRSYLSSQIHQLEQELETSLLIRSTRSVRLTAAGE 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 K+ + + + EL + G LRI L +F YPDI+ Sbjct: 68 KILTKMQGINESILQLEKELDHTKSTVGGLLRITAPTIFSHRYLIEICHQFQQQYPDIEF 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + D++ D AIR ++I +KL+ A+P YL P Q Sbjct: 128 DLDIGYTREDLTKSNFDLAIRATN-TPPENMIAKKLIPYQHVCCASPDYLATHGIPTHPQ 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN ++ +L + + T ++ I + +N L I+ + G G+ + Sbjct: 187 QLTQHNCLSDPNL-----RHWQFTNTSNQMIEVATDGNMLINDNLLILDAALKGKGVIKM 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y+V+ DN L +I+ D ++Y YP L+ + KL AF +F+ Sbjct: 242 PCYLVQPALDNGQLQQILSDYQMTQSSIYLIYPPQLRRSTKLSAFVDFV 290 >gi|293416966|ref|ZP_06659603.1| LysR family transcriptional regulator YhjC [Escherichia coli B185] gi|291431542|gb|EFF04527.1| LysR family transcriptional regulator YhjC [Escherichia coli B185] Length = 323 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLPMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|238913553|ref|ZP_04657390.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 307 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 4/247 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLM 236 Query: 248 IVKDNPN 254 V D N Sbjct: 237 WVIDEIN 243 >gi|209516343|ref|ZP_03265200.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209503279|gb|EEA03278.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 314 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 135/293 (46%), Gaps = 18/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA G F AA +L S +++SR I+ LET +G +L R R + LTE G + Sbjct: 7 IRIFVKVASDGGFASAARRLKFSVAAVSRAINQLETHLGSRLLNRTTRQVALTEAGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R E+ L+ + E + ++ P+G+LR+ G L+ + ++ + ++++ + Sbjct: 67 RRCEEILSSLDDAEAEARSATANPTGRLRVHALSSFGHQLVVPAILKYQQRFSELRVDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + D+ D D +I L + SS L+ +L +I A+P YL + P + ++L Sbjct: 127 MSGTIPDMLEDGYDASIVLAPELPSSGLVSLRLGSIPGVVCASPRYLASHGVPKTPEDLR 186 Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H + L W L+ V+ IG R L VN+ ++ G G Sbjct: 187 EHQCL---QLTTSVFPFDKWVFGGAGELSPVN--IGSAR---LTVNAMEALEPAVAGGLG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP I + LVR++ T VY YP K++ F + + Sbjct: 239 VAILPAGIALPGLRSGALVRLLRGYETQPVNVYALYPSRRFLDAKIRTFIDLL 291 >gi|78049384|ref|YP_365559.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037814|emb|CAJ25559.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 298 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 25/298 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AA+ L S +S++RQI+ LE +G +L R R ++LT GS Sbjct: 5 DAMRVFAAVAERSGFSAAADALDRSTASVTRQIAALEQRLGTRLLNRTTRRVSLTSAGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + +++P+G LR+ + G L L F YP +++ Sbjct: 65 YYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P + LI R+L + + A A+P YL P Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRILACASPAYLARAGTPRHPS 182 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 +L H + + GD + P G+ + L+ N+ + + Sbjct: 183 DLAGHECLLYHYSPSGDEV-----------RFQGPEGDIDVRLRGGLRANNGHVLNAAAL 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GI + PD++ + + LVRI+ D ++ Y K+++F +++ Sbjct: 232 AGQGIVMQPDFLAEPHLAAGRLVRILPDYALDEIGIFAVYTSRSHLAPKVRSFIDYLI 289 >gi|114561957|ref|YP_749470.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114333250|gb|ABI70632.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] Length = 299 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 136/301 (45%), Gaps = 27/301 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAEQL LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 IRSFVEVASCGSFTQAAEQLGLSRLQVSRHIKEVEQWLALRLLHRTTRRVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + + G +RIA+ I LGQ+ L ++ F +P + IQL+ Sbjct: 67 NYCQRILSEVTAMESRANSHNNELVGSIRIASPIGLGQHKLYDVVEAFCQQHPQVNIQLL 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + + D D A+R +P SLI R+L+ I A+P YL LS +L Sbjct: 127 LSDNVSQLVNDRVDIALRYTHQP--DESLIARRLMHIDSVICASPDYLVKHSALLSANDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSG 240 +HN + P+ W I E R L V+ L VL G+G Sbjct: 185 LQHNCLCHSSQ-PR------W-----EIIDESRTCLLDVSGNLQANDMGVLINAALRGNG 232 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 I LP + + L+ ++ ++ P T++ Y L + + R FI A W Sbjct: 233 IVCLPTDLANHYLEQGELLEVLPNITAPGKTLWAVY---LSRSYQQTVVRAFIDFTANAW 289 Query: 298 K 298 + Sbjct: 290 Q 290 >gi|170722339|ref|YP_001750027.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169760342|gb|ACA73658.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 309 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 145/289 (50%), Gaps = 12/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA +GSFT AAE++ L+ S++S+ ++ LE + +KLF R R L LT+ G+ ++ Sbjct: 12 VFICVAEAGSFTAAAERMSLTTSAVSKSVARLEQRLNMKLFARTTRRLALTDTGANYYQT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ LE ++++ + +P G++RI G+ + L EF+ + + + L Sbjct: 72 CKQILASLEEAEMQMHSAQTEPCGRVRIDLPASYGKLRVLPLLIEFIAEHELLMPHITLT 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188 ++ +D D +R+ P ++R+L+ I H + AAP YL+ P + ++L + Sbjct: 132 DRFVDPIEHDIDILVRIGGPQTWPQGVERRLIGIQQHIFCAAPGYLQRRGVPETERDLHE 191 Query: 189 HNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H + + G + P + + R + RI+ L+++ + G G+A L Sbjct: 192 HGCVLYGRTDGGVYPLHFPGAHASDSEQRVV-SGRIAIGNAEGQLAMV---LAGLGVAQL 247 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V+ D LV+I+ ++ T + + ++ ++ K+ A + I Sbjct: 248 PSWLVQEHLDAGTLVQILPELSTIGLPINVAWLKSRQSLPKVGALVDVI 296 >gi|300703988|ref|YP_003745590.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299071651|emb|CBJ42975.1| putative transcription regulator protein, HTH-type [Ralstonia solanacearum CFBP2957] Length = 306 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 15/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT Sbjct: 1 MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + ++ +E Q + S G+LR+ + + + ++ L FL +P Sbjct: 61 QDGQAFFERSQDLLADMEELQTMFRHSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I+L ++ +D+ + DC +R+ + SSLI R L + A+P YL P Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179 Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235 S+ +LD+H L+ T G +P W VD R P L V++ S C Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVP------GWEYVVDGRAAYRPMQGVLTVSTAESYEAAC 233 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ P + LV ++ V YP +++ F N++ Sbjct: 234 QAGLGLIQAPMSGLAPQVARGELVDVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMNWV 291 >gi|307725925|ref|YP_003909138.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307586450|gb|ADN59847.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 326 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 23/292 (7%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 VA +G F+ AA++L ++ SS++R + LE +G L R R ++LT+ G S+V Sbjct: 33 VADAGGFSKAAQRLGVATSSVTRLMDSLEASLGTALLTRTPRKVSLTDAGIAYVEQVSKV 92 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 L + +S P G LRIA G+ L +L FL +P + + +++ + + Sbjct: 93 LDDLAEADDSVFDSGASPVGALRIAVPSTYGRLCLAPHLAAFLAEHPRVFLDVVVSDHFV 152 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D++++ D A+R+ + ++LI RKL H A+ YL+ P + EL H + Sbjct: 153 DLAVERIDVAVRIGPAERDANLIVRKLADNPRHVVASREYLRRHGTPRTPAELAGHECLR 212 Query: 194 F---GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALLPD 246 F G + + W D GEP+ L NS +++ + GSGIALLP Sbjct: 213 FAYGGGYRSRQV----WTFQRD---GEPQPVEVRGRLLSNSLDVLLEAALAGSGIALLPQ 265 Query: 247 YIVKDNPNLVRIMEDVITP--------SFTVYFCYPEALKNTGKLKAFRNFI 290 + V + R+M + P VY Y + + K++A F+ Sbjct: 266 WQVAAEVHAGRLMR-LFEPFDARPQAGDAVVYAAYLPNRRQSSKVRALLQFL 316 >gi|241518471|ref|YP_002979099.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862884|gb|ACS60548.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 311 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 10/290 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + VF +G F+ A +L+LS+SS+ R ++ LE + ++LF R R ++T Sbjct: 1 MTISLSDIPVFVCAVDTGGFSEAGRRLNLSRSSVGRAVARLEAGLNVRLFDRTTRHQSVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + +L + L S P GKLR++ + G+ + L P Sbjct: 61 ADGQLFYEHCQRAMAELRAVEAALDSGSSAPRGKLRVSMPVLFGRMCVAPILTRLARENP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L ++ +D+ D D AIR P ++ R++ YAAP YL+ P Sbjct: 121 GLELELSFSDRKVDLLEDGFDLAIRNGSPGNAAGTRIRRVGHEETMLYAAPGYLERQGVP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLG 238 +I ELD H+ +T+ + +W V+ + E P +S L+ + +I G Sbjct: 181 EAISELDAHDTVTYS----RAGRVQSWTLEVEGVVHEFNP-VSRLRFDDIDAIADAATEG 235 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G+A LP ++VK + LV +M + V+ +P+ +++A Sbjct: 236 FGLAWLPFWLVKKRVETGELVPVMRQMPPYVSEVWALWPDGAHLPTRVRA 285 >gi|187921078|ref|YP_001890110.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719516|gb|ACD20739.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 304 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 137/289 (47%), Gaps = 13/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F AA + +S +SR I+ LE + I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDAGTFAAAAALMDMSPPGVSRAIARLEKRLKIRLFNRTTRAVSLTEEGRQFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +E GKLRI LL L F+ +P+I+++ I Sbjct: 74 VMPHLRGMEEAAAAAAGGGAIVRGKLRINLDPVFSHILLGAKLDAFMDAHPEIELEFIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188 ++ D+ +D D A+R +P +SSSLI RKL+ + A+P Y+ + P QEL + Sbjct: 134 DQLGDLIVDGFDLALRFGEP-RSSSLIARKLLDATIVTVASPLYIASRGRPTEPQELGRG 192 Query: 189 -HNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H + F + P+ + ++W R I E L VN +++ C+ GSG+A Sbjct: 193 IHRCLEFRN--PETGKPYHWEFHRKRKKLIVETN-GRLTVNDPGALLNACLAGSGVAQML 249 Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L +++++ LV + D F +Y +P + +AF +FI Sbjct: 250 LLGAEHLIRQG-RLVNLFPDWADERFPLYAYHPSRHHVPARTRAFLDFI 297 >gi|330014644|ref|ZP_08307947.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|328532840|gb|EGF59620.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 294 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 13/264 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+ + L+ L PSG +RI + +L L F YPDI+ Sbjct: 66 EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI D +RL + S + R + M P + + P + Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H I FGD + W VD + P+ +SY+ + LG Sbjct: 186 ADLVAHPCIAYQFGD-----GSLYAWELNVDGKKTPPPPQGQWAFADSYME-AKAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIME 260 G+A +P+ ++ D+ L+R+++ Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQ 263 >gi|237798868|ref|ZP_04587329.1| regulatory protein, LysR substrate-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021722|gb|EGI01779.1| regulatory protein, LysR substrate-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 297 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VAR SFT AA +L ++ S++S + LE +G++L R R + TE G + Sbjct: 7 NDLQAFLLVAREQSFTKAATKLGVTPSALSHTLRALEERMGLRLLARTTRNVAPTEAGEQ 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +PD + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPDSLAQPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|27381641|ref|NP_773170.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354809|dbj|BAC51795.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 298 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 6/285 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L F VA+ SFT AA +L + QS++S I LE ++GI+L R R + LTE G Sbjct: 5 DFNDLLWFLTVAKERSFTKAAAKLGIGQSTLSHTIKRLEDQMGIRLLTRTTRSVGLTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++E +L KPSG++R+ + Q+++ L+ L YPDI+ Sbjct: 65 ERLRLSMAPRIAEIEAEIADLMAFRDKPSGRIRMTVSEHALQSVVWPKLQPILKDYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L LDN +I D D +RL + ++ + R + A +P Y P Sbjct: 125 LELSLDNGFRNIVEDGFDAGVRLGESVEKDMVAVRIGPDWRLVAVGSPGYFAEHGVPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L +HN I + + + W D R+ L N+ + + G GIA Sbjct: 185 HDLVRHNCINL--RLERAGGLYAWEFAKDGQELRVRVDGQLTFNTSYAQADAALKGYGIA 242 Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFC-YPEALKNTGKLK 284 +P+ +V+ + + ++ D +P F Y YP +N+ K Sbjct: 243 YVPENVVQRHIMSGDLALVLDKWSPVFDGYHIYYPSRRQNSPAFK 287 >gi|134296657|ref|YP_001120392.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139814|gb|ABO55557.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 300 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 7/211 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + V V +G+F A E + L+Q ++SR ++ LE VGI++F R AR + Sbjct: 1 MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ +S + G+LR+ G +L + EFL Sbjct: 61 TLTDEGRRFYETVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP++ +++ + ++ D+ D D A+R P + SS R L+ + A+ Y+ Sbjct: 121 RYPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYIARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW 207 EPL ++L D H + D P + W Sbjct: 180 GEPLHPRDLADGHRCVLIRD--PVTGRPYEW 208 >gi|300718459|ref|YP_003743262.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299064295|emb|CAX61415.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 306 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 11/261 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L V+A GSFT AAE+L +S++++S++I LE G+ L R R L LT G Sbjct: 10 WIHLHWLTVLAEQGSFTRAAERLEVSKAAMSQKIKELEHLAGVPLVTRTTRSLRLTSAGE 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 KL + + ++E + +++S+ G +R+ + + L ++ FL +P +++ Sbjct: 70 KLVEELRQPFAQIEQSFFSVRDSAGPLRGLVRVTAPVAFARQQLVPHITAFLREHPQVRV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL + ++ + ++ + D AIR + + + L T H A+P YL P + Q Sbjct: 130 QLEVSDRLVSLASEGFDLAIRHSDTLPETH-VALPLCTTHAQVVASPAYLTQHGFPQTPQ 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGS 239 L H + + P+ E W R GE ++ N+ SI + G Sbjct: 189 ALSDHQCLYY----PRGTEMPRW-TFASRQAGEESVTVNVSGPFATNNSESIRDAALDGL 243 Query: 240 GIALLPDYIVKDNPNLVRIME 260 GIALLPD+ + + R++E Sbjct: 244 GIALLPDFSARAALSEGRLVE 264 >gi|307730092|ref|YP_003907316.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584627|gb|ADN58025.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 334 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 134/299 (44%), Gaps = 26/299 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFLRVVEAGSFTAAAQSLNSTTGAMSRALSELEAHLRTRLLNRSTRRLALTTAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++T + E + +PSG LR+ + +GQ+ + + + YP++ ++L Sbjct: 66 LKRCRQILADVDTAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRAQYPEVTVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ AD +I + S L+ L T A+P Y++ P + +L Sbjct: 126 TLSQRMPDLFEGSADVSIVGAATLPDSDLVSLPLGTTFSILCASPAYVRAHGTPQTPADL 185 Query: 187 DKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 H LI P W+ +D P G ++ +QVN S++ G GI Sbjct: 186 AHHECLILHTPAFPP----REWV--LDGPNGSETMAVDGPVQVNIAESLIAAIREGMGIG 239 Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 ++P Y ++D LVR++ TVY YP R F+ K R W Sbjct: 240 MVPLYAAIAGLRDG-TLVRVLPAFTLQKMTVYALYPS-----------RKFVDAKTRTW 286 >gi|50121309|ref|YP_050476.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49611835|emb|CAG75284.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 310 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 18/300 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V ++GSF A E S+ ++SRQ+ LE +G++L +R R ++LT +G + Sbjct: 4 MTTFVAVVKAGSFVKAMESTGFSKPAVSRQVIELEKFLGVRLLHRTTRRISLTSEGETYY 63 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + EV +E + ++ + + G+LRI D G L +F+ P +++ ++ Sbjct: 64 QRCKEVLSVIEEAENQVCARANQAHGRLRIGVPQDFGVLQLTPLWAQFMDRNPKVELDIV 123 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++++D + D +R+ + S+L+ L T + A+P YL+ P +LD Sbjct: 124 LSDRNVDPVEEGYDLVVRIGN-LPDSTLVSSLLATTRLILCASPEYLRLRGTPTHPTDLD 182 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 KH +I + G+ C E + P L VNS + + GI Sbjct: 183 KHVVIAYSYNASGNEWLFCKEKREQIKVSTHP-------RLNVNSGATCRLLAIESQGII 235 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDW 297 L PD++V + LV I+ + + ++ YP + K++ R+F+ L+ + W Sbjct: 236 LQPDFLVHSDIIKGKLVEIIPEWQAQTLEIHALYPTRILLPLKVQLLRDFLSDSLRPKPW 295 >gi|15829563|ref|NP_308336.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|13359766|dbj|BAB33732.1| putative transcriptional regulator [Escherichia coli O157:H7 str. Sakai] Length = 300 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 12 NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 71 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ T+ + L+ L PSG +RI + L L F YPDIQ Sbjct: 72 EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIQ 131 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 132 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 191 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239 +L H I F D + W L D+ I +P +SY+ + LG Sbjct: 192 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHQPEGQWAFSDSYME-AEAARLGL 245 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G+A +P +V D+ L+R+++ ++ YP Sbjct: 246 GLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 283 >gi|294023792|ref|YP_003547111.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677572|dbj|BAI99088.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 292 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 28/284 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ +WD + F V G F AA+ L S S +SR IS LE +G +LF R+ R +T T Sbjct: 1 MTSEWDGIEEFLAVYDRGRFAPAAKSLRKSPSHVSRAISRLEARLGERLFQRNTRIVTPT 60 Query: 61 EQGSKLHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E H H +E L + P G L + +I G+ ++ ++ F+ Sbjct: 61 EFA---HAFADRCRHMVEDRIEAFALSDGQGPPRGALNVTCSIAFGERVIAPLIRHFVKQ 117 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP + L L+N+ +D+ + D AIR + S LI R++ + ++ A P YL+ Sbjct: 118 YPQVIATLDLNNRVVDLVSENYDVAIRTGH-LSDSRLIGRRIGSRKLYLCATPDYLEKHG 176 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIM 232 P I +L H I + D W VD RP G L+VNS ++ Sbjct: 177 VPSDINDLKYHACI-------QGTADV-WHFIVDDKLVDFRPKGP-----LRVNSGTAVA 223 Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 + GI LPD+ V+ ++ +LV ++E P ++ Y Sbjct: 224 DAALASFGICQLPDFYVEPYINSGSLVSLLETSSVPEEPIWVVY 267 >gi|295677070|ref|YP_003605594.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436913|gb|ADG16083.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 312 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ GQ+ + + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVSRYQQRYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ L + S L+ +++ + A A+P YL+ P + +L Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRIGSAFSIACASPAYLERHGVPQTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVLGSGIA 242 +HN + ++ W T D P GE +S QVN +++ G GIA Sbjct: 186 AQHNCL---QMVTPVHPPDRW--TFDGPNGEEVVSLGSATFQVNVAEAMVVAVAQGMGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L+P Y + L ++ + + +Y YP K++ + F+ Sbjct: 241 LIPIYSAISRLRSGELEWLLPEYTSQQMNLYALYPSRQYLDAKIRTWVEFL 291 >gi|207723575|ref|YP_002253974.1| hypothetical protein RSMK00859 [Ralstonia solanacearum MolK2] gi|206588776|emb|CAQ35739.1| hypothetical protein RSMK00859 [Ralstonia solanacearum MolK2] Length = 306 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 15/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT Sbjct: 1 MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + ++ +E Q + S G+LR+ + + + ++ L FL +P Sbjct: 61 QDGQAFFERSQDLLADMEELQTMFRHSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I+L ++ +D+ + DC +R+ + SSLI R L + A+P YL P Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179 Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235 S+ +LD+H L+ T G +P W VD R P L V++ S C Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVP------GWEYVVDGRAAYRPMQGVLTVSTAESYEAAC 233 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ P + LV ++ V YP +++ F N++ Sbjct: 234 QAGLGLIQAPVSGLAPQVARGELVDVLPQYRPAPMQVSLVYPNRRNLPVRVQVFMNWV 291 >gi|148254217|ref|YP_001238802.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406390|gb|ABQ34896.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 319 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA SF AA++L LS + S+ + LE + +L R +R + LTE G Sbjct: 7 IRVFCQVAELKSFAAAADRLGLSPAMASKHVMQLEQRLSTRLLNRTSRRVGLTEAGQVYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + +++V P G L+++ + L G L + YPD+ I L Sbjct: 67 DQVRPMLESLDEVEAVVSKATVIPRGTLKVSAPVWFANPLFAGTLAAYRARYPDVVIDLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ + D A+R+ LI R L + M AAP YL P ++ +L+ Sbjct: 127 LSGRLVNLVDEGFDLALRVSA-APGDGLIARPLTPVLMQLVAAPSYLATAGRPKAVADLN 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGIAL 243 H ++ + + + T+ P GE ++ V N L + V G G+A+ Sbjct: 186 GHAMLKYALYPLRTI-------TLSSPDGEVALAFKDVLISGNETL-LHHAAVAGMGMAV 237 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +++ D+ L ++ D +T + YP + K++ F +FI Sbjct: 238 LPRWLMADDLASGRLETVLPDAMTIRAPLMAVYPSRKYLSAKVRTFIDFI 287 >gi|187732113|ref|YP_001880166.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94] gi|187429105|gb|ACD08379.1| transcriptional regulator, LysR family [Shigella boydii CDC 3083-94] Length = 299 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHFL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|312960095|ref|ZP_07774607.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311285589|gb|EFQ64158.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 297 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 7/257 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L + ++++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAQRLKTTHATVARHIEAIEKSLGTALFVQHAQGYELTPS 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + + EL + P GK+R+ LG L G + YP + Sbjct: 62 GEALLKHAEAMENVALLAEDELTHCAA-PLGKIRLGVAEGLGVMFLAGRMGGLFERYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P L+ RKL + YA+ YL Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-SVDQLVTRKLTDYRLSLYASRAYLDRNPPIEK 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H+ I + D + E +L++ R P++ S ++ Q G GIA Sbjct: 180 REDLAAHSWIDYVDDLLFSQE-LKFLSSFCR---NPKV-VFHSTSVIAQHQAARSGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIM 259 +LP ++ +P+LV ++ Sbjct: 235 VLPCFMAASDPDLVALL 251 >gi|299065907|emb|CBJ37087.1| putative HTH-type transcriptional activator aaeR [Ralstonia solanacearum CMR15] Length = 305 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 131/289 (45%), Gaps = 32/289 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ +F V +GSFT AAE L + +SS S +S LE +G++L R R L LTE Sbjct: 1 MEWNDWEIFCRVVEAGSFTAAAEALGIPKSSASAAVSRLEASLGVRLLTRTTRQLRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + ++ +L + +S SG LRIA ++G L + + L +P++ Sbjct: 61 GSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQTLARFPNL 120 Query: 123 QIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 QIQ+ + + D ++ Y + + + + SSL+ R++V I YAAP L Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG----- 175 Query: 182 SIQELDKHNLITFGDLIP-KCM---EDFNWLATVDRPIGEPRISCLQV---------NSY 228 + L+T DL C+ +D +W V RP G P +V N+ Sbjct: 176 ------RAPLVTPADLAGWPCLSGPDDASW---VFRPAGAPAADPFEVPIQPRLQTLNAE 226 Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + + V G G+A + + + LVR++ D VY P Sbjct: 227 MR-ARAAVRGLGVARMARSVGDAEVETGRLVRVLPDYEPTPLRVYALMP 274 >gi|256024482|ref|ZP_05438347.1| putative LysR-family transcriptional regulator [Escherichia sp. 4_1_40B] Length = 294 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 24/284 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F V R GSFT AA++L L+QS ISR + LE +G++L R R L+LT G Sbjct: 6 NYNDLYLFMQVVREGSFTAAAQRLGLAQSGISRAVRELEERLGVQLLVRTTRKLSLTHAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L+R + L+ L PSG +RI + +L L F YPDI+ Sbjct: 66 ELLYRNVESGFDALDMGLATLAHYRHTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D IRL + S + R + M P + + P + Sbjct: 126 LELISESRFVDIITERFDAGIRLGSEVDSGMVAVRISPDMEMAVVGTPGHFQRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H I FGD + W D + +P+ +SY+ + LG Sbjct: 186 TDLVGHPCIAYQFGD-----GSLYAWELNQDGKKITHQPQGQWAFADSYME-AKAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280 G+A +P+ +V D+ L+R+++ CY + L+ + Sbjct: 240 GLAYVPEELVSDDIEQGALIRVLQ-----------CYSQRLEGS 272 >gi|206578426|ref|YP_002239083.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|290512792|ref|ZP_06552157.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|206567484|gb|ACI09260.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|289774675|gb|EFD82678.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 293 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 128/252 (50%), Gaps = 15/252 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+WD R+F +AR+G+ + AA+++++ +++SR++ LE + + LF RH G LT+ Sbjct: 5 FNWDDARIFLAIARAGTLSGAADKMNMGIATVSRRLDRLEQSLKVPLFSRHQSGYRLTDD 64 Query: 63 GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L R + Y L + + V +G +R+AT+ +L + + +LK L YPD Sbjct: 65 GEALLARAEALEYAGLAFGEAAQLQGHV--AGVVRLATSDNLATHFILPSLKGLLDHYPD 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++++ + +++ AD AIR+ KP + L ++L T+ Y A YL + L Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP-DAGHLTLKRLGTVGFGVYGAASYLAGA-DGL 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 S+ E D +P W+ R G P C ++ N+ ++ + G G Sbjct: 181 SLSEADFVGWPETHQHLPAA----QWITRTLR--GRP---CKVEANTLVAQVSAVSAGLG 231 Query: 241 IALLPDYIVKDN 252 + +LP ++ + N Sbjct: 232 LGVLPHFMARAN 243 >gi|148550969|ref|YP_001260399.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148503380|gb|ABQ71632.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 294 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 140/287 (48%), Gaps = 8/287 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD LR+F VAR+G T A + L ++ ++++R+++ LE +G LF R +RG+ +T G+ Sbjct: 4 WDDLRLFLAVARAGRLTKAGQALGINHTTVARRLTALEEALGAHLFDRTSRGVAMTAAGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + E L + +G++R+AT G ++ N+ +F YP + + Sbjct: 64 LLLDHAERAEREFEAAAAALSGRAEAIAGEVRLATPEAFGTYIVAPNIVDFHARYPGLLL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183 +L+ +++ + ++ AD AI + +P + L+ RKL + YA+ YL C P+ + Sbjct: 124 ELMPESRAVSLANREADIAITVDRPPR-GKLVVRKLCDYRLGLYASADYLA-CHPPIRNA 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 Q++ + + D M D + L + E R + +S ++ + G G+ L Sbjct: 182 QDVAAQPFVGYID----QMIDMHGLRYLSEVADETR-PVFRSSSIVAQQKAVASGVGLGL 236 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + P LVRI+ + + + + + + + + +A +FI Sbjct: 237 LHRFSADSEPGLVRILPEQVEITRSYWLVLRPEHQKSPRTRAVIDFI 283 >gi|320199700|gb|EFW74290.1| LysR family transcriptional regulator YhjC [Escherichia coli EC4100B] Length = 323 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|241766718|ref|ZP_04764555.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241362935|gb|EER58644.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 302 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 24/294 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR V V +GSF AA QL +S + + I LE +G +LF R R +LTE Sbjct: 2 DKLRNMEVMVAVVEAGSFAGAARQLGISAVMVGKHIQQLEAHLGARLFQRSTRRNSLTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ H + V ++ + ++ S P G LR++ LG + + + +FL + + Sbjct: 62 GAAFHEDSRRVLEQVRWAESAVERSRAVPQGLLRVSAPFTLGTHAIAPLVADFLQRHEHV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L + +D++ D D A+R+ + + L+ R L M AAP YL+ P Sbjct: 122 RVDLQLSDSVVDLAGDGFDAAVRIGQ-VVDEGLVARPLRPYRMVIAAAPAYLQRHGTPEG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235 +L +H+ C+ W V+ + + P + L N + Q Sbjct: 181 AADLARHH----------CLSHSVWQRRVEWTLRDGDETFFWPENARLVCNQGEGLRQAA 230 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G G+ + P+ ++ D+ LV +M+ + V+ Y + KL F Sbjct: 231 LRGLGLVMQPEVLLADDLARGALVPVMQHCLPLPRPVHLVYAPDRRQLPKLARF 284 >gi|116696448|ref|YP_842024.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113530947|emb|CAJ97294.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 301 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 136/286 (47%), Gaps = 32/286 (11%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +R V R+ GS + A + +Q +IS+ ++ LE E+G++L R L+ TE Sbjct: 2 DTIRAMQVFVRAVELGSLSAVAREQQSTQPTISKVVAALEKEMGVRLLERSTTSLSPTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + H V + + + S +P+G++R++ G L + F YP++ Sbjct: 62 GRRFHERARRVLDEYGEAVSDARGMSGQPAGRVRVSAPASFGVLRLNALVLAFQQRYPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCRE 179 +++L+ D++ +D+ + D A+RL + + + +R V+ + A+P YL R+ Sbjct: 122 EVELLFDDRFVDLVEEGVDIAVRLGASLPPNVVARRIAVSPRLL-VASPDYLARHARIRQ 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLAT-----VDRPIGEPRISC---LQVNSYLSI 231 P +L +H ++ F WLA +D P G+ +S +VN+ L++ Sbjct: 181 P---ADLARHQILR-----------FTWLAAGDEIVLDGPGGQAPVSASCRYRVNNSLAM 226 Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + + G+G + P ++V+ D+ L R++ P+ + YP Sbjct: 227 RESFLAGAGFGMTPAWLVQDLLDSGALQRVLPRWSGPAQEAFLVYP 272 >gi|71065690|ref|YP_264417.1| LysR family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71038675|gb|AAZ18983.1| probable transcriptional regulator, LysR family [Psychrobacter arcticus 273-4] Length = 303 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 140/288 (48%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GSF++AA L LS +S+ +S LE ++ I+L R R ++LTE GS Sbjct: 5 DAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNIRLLNRTTRKVSLTEAGSH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ + +L P G LRI+ + + + +F + YP + + Sbjct: 65 YFGHAQQILLNIDDMESQLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQMRYPLVTVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +DI + D A+R+ + +++SSLI +K+ I + AAP YL P ++ Sbjct: 125 LQLTDRKVDIVEEGFDVALRIGQ-LKNSSLIAKKVAPIRVVLCAAPEYLNKHGTPTQPKD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H + + + ++ + L + S + N+ +++ + G+G+ L P Sbjct: 184 LEHHRYLHYSYMNMDSKDNIHQLLKAKY---LKQGSEFRSNNGDVLVEAAIAGAGLVLQP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I+ + + LV ++ ++ + +Y Y K++ F +F+ Sbjct: 241 TFIISEAISSGKLVVVLPEIEPEALGLYAVYAHRKLLPHKVRCFIDFM 288 >gi|325275865|ref|ZP_08141722.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas sp. TJI-51] gi|324099006|gb|EGB96995.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas sp. TJI-51] Length = 311 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 138/289 (47%), Gaps = 10/289 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA GSFT AAE+L+L+ S+IS+ ++ LE +G +LF R R L+L+E G +R Sbjct: 12 VFVAVADLGSFTAAAERLNLTSSAISKSVARLEARLGARLFNRTTRSLSLSEAGVVFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE + L S +P GK+RI G+ + + +F+ L+P +Q + Sbjct: 72 CTSVLADLEEVEHTLAASDDQPHGKVRIELPASYGRLHVLPLILDFIRLHPLLQPHVSFS 131 Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D + D +R+ P ++L + + AAP YL+ P ++L+ Sbjct: 132 DRFVDPVHEGIDIVVRIGGPDAWPAALGHQYFGAQRLMFCAAPGYLEKHGVPQHERDLEH 191 Query: 189 HNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + +G L+ ++R +PRI+ V + + G GI LP Sbjct: 192 HHCVGYGHTDGLVSPWYFKGRHPGEMERRTVQPRIA---VGDGEGEVAAVLAGHGIGQLP 248 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++ + D LV ++ + T + + ++ + K++A +++ Sbjct: 249 TWLTQQYLDQGRLVEVLPALATDGLPMNLVWLKSREGLPKVRALLDYLL 297 >gi|319791206|ref|YP_004152846.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593669|gb|ADU34735.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 298 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/294 (23%), Positives = 138/294 (46%), Gaps = 14/294 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW +R F GS A+ L SQ ++ R I+ LET++G+ LF R RGL T Sbjct: 7 LDFDWRLVRAFLAALDHGSLLAASRALGSSQPTLGRHIAELETQLGVVLFERTGRGLRPT 66 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 ++L +E +E+ + L S + +G +RI+ + + +L L Sbjct: 67 AMAARL----AESARAMESGAVSLSRSVSGANAATAGTVRISASQATARQMLPALLVRMR 122 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 P+IQ++L+ N+ ++ AD AIR+ +P +++++ R++ + A+A YL+ Sbjct: 123 QELPEIQVELVSTNEVSNLLRREADIAIRMTEPT-TATVVARRIGRFALGAFAQADYLRR 181 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P +L +H+++ + D I + L T P+ C + + + + Sbjct: 182 RGTPRQTADLLRHDVLGY-DRIDTIVRMSAQLGT---PLQREDF-CFRTDDMGAYWEALR 236 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI + + + + + + R++ + PS V+ ++ +++A +F+ Sbjct: 237 QGMGIGFVSESLARTDSQVQRVLPQLKIPSLPVWLAVHREIRTDRRIRAVYDFL 290 >gi|253771648|ref|YP_003034479.1| LysR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163443|ref|YP_003046551.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|242379040|emb|CAQ33839.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|253322692|gb|ACT27294.1| transcriptional regulator, LysR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975344|gb|ACT41015.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253979500|gb|ACT45170.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] Length = 323 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|320181513|gb|EFW56431.1| Putative transcriptional regulator LYSR-type [Shigella boydii ATCC 9905] Length = 303 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 4/238 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 234 >gi|218703560|ref|YP_002411079.1| putative LysR-like transcriptional regulator [Escherichia coli UMN026] gi|293403392|ref|ZP_06647483.1| transcriptional regulator [Escherichia coli FVEC1412] gi|293408421|ref|ZP_06652260.1| transcriptional regulator [Escherichia coli B354] gi|298379004|ref|ZP_06988885.1| transcriptional regulator [Escherichia coli FVEC1302] gi|300895665|ref|ZP_07114264.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|301020090|ref|ZP_07184220.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|331651180|ref|ZP_08352205.1| putative transcriptional regulator [Escherichia coli M718] gi|331661642|ref|ZP_08362565.1| putative transcriptional regulator [Escherichia coli TA143] gi|218430657|emb|CAR11526.1| Putative LysR-like transcriptional regulator [Escherichia coli UMN026] gi|291429245|gb|EFF02265.1| transcriptional regulator [Escherichia coli FVEC1412] gi|291471599|gb|EFF14082.1| transcriptional regulator [Escherichia coli B354] gi|298280117|gb|EFI21621.1| transcriptional regulator [Escherichia coli FVEC1302] gi|300360394|gb|EFJ76264.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300398967|gb|EFJ82505.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|331050921|gb|EGI22973.1| putative transcriptional regulator [Escherichia coli M718] gi|331060064|gb|EGI32028.1| putative transcriptional regulator [Escherichia coli TA143] Length = 294 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 132/282 (46%), Gaps = 21/282 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ T+ + L+ L PSG +RI + L L F YPDI+ Sbjct: 66 EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235 +L H I F D + W D RP G+ +S +SY+ + Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHRPEGQWALS----DSYME-AEAA 235 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LG G+A +P +V D+ L+R+++ ++ YP Sbjct: 236 RLGLGLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277 >gi|218550527|ref|YP_002384318.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC 35469] gi|218358068|emb|CAQ90714.1| DNA-binding transcriptional regulator, efflux system [Escherichia fergusonii ATCC 35469] gi|324115153|gb|EGC09117.1| LysR substrate binding domain-containing protein [Escherichia fergusonii B253] gi|325498822|gb|EGC96681.1| DNA-binding transcriptional regulator [Escherichia fergusonii ECD227] Length = 309 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVRDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLSQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240 >gi|188993301|ref|YP_001905311.1| putative transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris str. B100] gi|167735061|emb|CAP53273.1| putative transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris] Length = 310 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 20/303 (6%) Query: 1 MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+ D +D ++ F V SGSFT AA+ L +S++++++ + LE + + L R R + + Sbjct: 1 MAMDRFDAMQAFARVVESGSFTKAADTLQISRATVTQLVQQLEARLRVTLLNRTTRRVAV 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G+ + + ++ + L +S P G+LR+ L + +L L +F Y Sbjct: 61 TADGAAYYERVVRLLADMDDAETSLSVASSVPRGRLRVDVPSPLARLILMPALPDFHARY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PDIQ+ + ++ +D+ + DC +R I SL+ R + + YAAP YL Sbjct: 121 PDIQLHMGASDRRVDLIGEQIDCVVR-GGTITDQSLVARHVGDLQAGVYAAPGYLARLGM 179 Query: 180 PLSIQELD--KHNLITF---GDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSI 231 P +EL+ H I F GD +P + D + R + ++ N+YL+ Sbjct: 180 PAHPRELEDTAHRTIGFMRWGDGVPWPLVMQRDGEHVQVHRRYV----VASDDGNAYLAA 235 Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + G G+ LP Y+ + L+ + D + +P + KL+ F + Sbjct: 236 ---GLAGMGVLWLPQYMARAPLSRGELLPVFADWQLDPMPLSIAFPPNRHVSAKLRVFID 292 Query: 289 FIF 291 ++ Sbjct: 293 WVI 295 >gi|167570921|ref|ZP_02363795.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 294 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 13/288 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR G+ + AA +L + +++ R+++ LETE+ ++L R R TLT Sbjct: 2 FDWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQVRLVERFPRHCTLTGA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + S + + +Q + +G + ++ L N F YP I Sbjct: 62 GRRIFEIASTMESGAFAIERAVQAERSQLTGTVVVSAPPVLVTNFFAATTTAFRERYPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L + + +S AD A+RL +P ++ +++ R++ + YAA Y P Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEAGNVV-RRIGAMEFALYAARRY------PY- 173 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +QE + I + D M WL V G+ + C ++ S G+GI Sbjct: 174 LQEPARWEFIGYDDQFDD-MPQQRWLKKV---AGKRPVVC-RLGDITSQFAATRAGAGIG 228 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + +LV + D ++ LK ++A +FI Sbjct: 229 MLPRFLPSASDDLVELDADAEPFVRDIWLVVHRQLKAAPPIRAVMDFI 276 >gi|241205513|ref|YP_002976609.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859403|gb|ACS57070.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 300 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 133/264 (50%), Gaps = 18/264 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V F+ AA ++ S++S+ ++ LET +G++L R R L LT +G Sbjct: 11 EMEVFVSVVERCGFSAAATARRMTPSAVSKLVARLETRLGVRLVNRSTRKLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + E Q S+ + SG++RI T+ G ++L + F+ L+P + + Sbjct: 71 YERSITILADI--AEAERQASTGEQASGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + AD AIR P+++SSLI RKL AAP YL +PL+I + Sbjct: 129 ISHTDRIVDLMEERADVAIRA-GPLKNSSLIARKLGATGKIIVAAPDYLSRHGKPLTIAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241 L +H I F + +E ++ R GE P LQV ++ + G+G+ Sbjct: 188 LRRHCRIGFS--YARAIEGWSL-----REGGETVMIPITPGLQVGDGEAMRHLALSGAGL 240 Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262 A L + V+ D LV ++E+ Sbjct: 241 ARLAAFTVRADIDAGRLVPVLEEA 264 >gi|157148818|ref|YP_001456137.1| putative DNA-binding transcriptional regulator [Citrobacter koseri ATCC BAA-895] gi|157086023|gb|ABV15701.1| hypothetical protein CKO_04651 [Citrobacter koseri ATCC BAA-895] Length = 309 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQFGVPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N +++ ++ G+GIA +P Sbjct: 185 SNHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLSRWLTAGAGIAYVP 240 >gi|86359220|ref|YP_471112.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86283322|gb|ABC92385.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 342 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 141/292 (48%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE E+G L R R ++TE G Sbjct: 51 RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 110 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121 +R S++ +++ ++E++ + G+LR++ D+GQ+L+ +F PD Sbjct: 111 YRSASDILKEIDNLADLVRENNAQLKGRLRVSVPRTFVDADVGQSLI-----DFAGENPD 165 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + +++ D++ +D+ + D AIR+ K ++ S +I RK+ +H A P +L+ R P Sbjct: 166 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCATPDFLE--RYPD 222 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 D NL D + + + ++VNS + ++ + G GI Sbjct: 223 LDHPSDISNLPFIVDTNSRTQGSIRFHNPDNTTFAVAVAGPIEVNSPHATLRAALAGIGI 282 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL+PD+I + ++ LV + D I +Y YP K++ F +++ Sbjct: 283 ALIPDFIARKPIESGELVTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 334 >gi|328474658|gb|EGF45463.1| LysR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 298 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 102/187 (54%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + + G +R+ +G++++ + EF+ YP++ I L Sbjct: 70 HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPNVSIDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D A R+ + + + + RKL+T+ M A+P Y++ P +EL Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPKHPKEL 188 Query: 187 DKHNLIT 193 +H +T Sbjct: 189 AEHRTLT 195 >gi|238026739|ref|YP_002910970.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237875933|gb|ACR28266.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 318 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 20/254 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L V+A GSFT AA +L +S++++S +I+ LE G+ L R R + LTE G Sbjct: 10 WVHLHWLTVLADQGSFTGAAARLGVSKAAVSLKIAELERAAGVPLVQRTTRSVRLTEAGL 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T +Y ++ + ++++ + G LR+ + L + L L EF YP ++I Sbjct: 70 RLADETRPLYDRISQSFSGVRDTGAQVRGSLRVTAPVALARQQLVPRLAEFRRRYPAVRI 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL + ++ ++ + D AIR + + KL H AAP YL P Sbjct: 130 QLDVSDRLASLATEGFDLAIR-HSAAAPETHVAWKLCRTHSVIVAAPAYLAVRGAPAHPD 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-----------LATVDRPIGEPRISCLQVNSYLSIMQ 233 +L H+ + + P+ + W A V PIG P L N+ + Sbjct: 189 QLAGHDCLYY----PRSHDSAAWTFERAGTRRQRAARVTVPIGGP----LGANNSEVLRD 240 Query: 234 YCVLGSGIALLPDY 247 + G GIALLPD+ Sbjct: 241 AALDGLGIALLPDF 254 >gi|170734910|ref|YP_001774024.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820948|gb|ACA95529.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 310 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 13/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F+ AA+ + ++ +SR I+ LE + I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE GKLRI + + +L L F+ +P+++I+LI Sbjct: 74 VMPHLAGLEEAATAAAGGVSAVRGKLRINLDPVVYRAILGPRLDVFMDAHPELEIELIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188 + D+ MD D A+R +P ++SSLI RKL+ + AAP Y+ P ++L+ Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLEDR 192 Query: 189 -HNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H + F + P+ + F W R + + R L VN +++ C+ GSGIA Sbjct: 193 HHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + ++ D L+ + + + +Y YP K +AF +F+ Sbjct: 250 LLGAEPLIADG-RLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFM 297 >gi|83719042|ref|YP_442062.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83652867|gb|ABC36930.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 332 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 13/288 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR G+ + AA +L +++ R+++ LETE+ +L R AR TLT Sbjct: 40 FDWENLRHFLAVARVGTLSGAARELGADHATVGRRVTMLETELQTRLVERFARHCTLTGV 99 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + S + + +Q + +G + ++ L N F YP I Sbjct: 100 GRRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGI 159 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L + + +S AD A+RL +P ++ +++ R++ + YAA Y P Sbjct: 160 QLALSGQAQSVSLSRREADVAVRLVRPKEADNVV-RRIGAMEFALYAARRY------PY- 211 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +QE + + + D M WL V G+ I+C ++ S G+GI Sbjct: 212 LQEPARWEFVGYDDPFDD-MPQQRWLKKV---AGKRAIAC-RLGDITSQYAATRAGAGIG 266 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + +LV + D + ++ LK + ++A +FI Sbjct: 267 MLPRFLPAASDDLVELDVDAEPFARDIWLVVHRQLKASPPIRAVMDFI 314 >gi|195939441|ref|ZP_03084823.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. EC4024] gi|256018843|ref|ZP_05432708.1| putative DNA-binding transcriptional regulator [Shigella sp. D9] gi|256024183|ref|ZP_05438048.1| putative DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|261228248|ref|ZP_05942529.1| transcriptional regulator, LysR family protein [Escherichia coli O157:H7 str. FRIK2000] gi|261255104|ref|ZP_05947637.1| putative DNA-binding transcriptional regulator AaeR, efflux system [Escherichia coli O157:H7 str. FRIK966] gi|297517621|ref|ZP_06936007.1| putative DNA-binding transcriptional regulator [Escherichia coli OP50] gi|301028719|ref|ZP_07191927.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|306816422|ref|ZP_07450554.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|307139931|ref|ZP_07499287.1| putative DNA-binding transcriptional regulator [Escherichia coli H736] gi|331659523|ref|ZP_08360465.1| HTH-type transcriptional activator AaeR [Escherichia coli TA206] gi|222034953|emb|CAP77696.1| HTH-type transcriptional activator aaeR [Escherichia coli LF82] gi|299878265|gb|EFI86476.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|305849987|gb|EFM50446.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|307625164|gb|ADN69468.1| putative DNA-binding transcriptional regulator [Escherichia coli UM146] gi|312947793|gb|ADR28620.1| putative DNA-binding transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|320175960|gb|EFW51036.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae CDC 74-1112] gi|320189590|gb|EFW64249.1| Putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EC1212] gi|320194720|gb|EFW69350.1| Putative transcriptional regulator LYSR-type [Escherichia coli WV_060327] gi|320202153|gb|EFW76728.1| Putative transcriptional regulator LYSR-type [Escherichia coli EC4100B] gi|320640035|gb|EFX09616.1| transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320645605|gb|EFX14614.1| transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320650915|gb|EFX19372.1| transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320656296|gb|EFX24208.1| transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661986|gb|EFX29394.1| transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320666820|gb|EFX33799.1| transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] gi|323183004|gb|EFZ68403.1| HTH-type transcriptional activator aaeR [Escherichia coli 1357] gi|326337938|gb|EGD61772.1| Putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. 1125] gi|326347507|gb|EGD71232.1| Putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. 1044] gi|330909287|gb|EGH37801.1| putative transcriptional regulator LYSR-type [Escherichia coli AA86] gi|331054105|gb|EGI26134.1| HTH-type transcriptional activator AaeR [Escherichia coli TA206] gi|332345199|gb|AEE58533.1| transcriptional activator protein AaeR [Escherichia coli UMNK88] Length = 303 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 4/238 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 234 >gi|15596398|ref|NP_249892.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100650|ref|ZP_01364568.1| hypothetical protein PaerPA_01001676 [Pseudomonas aeruginosa PACS2] gi|116049149|ref|YP_792049.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892822|ref|YP_002441691.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234334|ref|ZP_04927657.1| hypothetical protein PACG_00174 [Pseudomonas aeruginosa C3719] gi|254239568|ref|ZP_04932890.1| hypothetical protein PA2G_00185 [Pseudomonas aeruginosa 2192] gi|313106176|ref|ZP_07792429.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9947128|gb|AAG04590.1|AE004550_6 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584370|gb|ABJ10385.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166265|gb|EAZ51776.1| hypothetical protein PACG_00174 [Pseudomonas aeruginosa C3719] gi|126192946|gb|EAZ57009.1| hypothetical protein PA2G_00185 [Pseudomonas aeruginosa 2192] gi|218773050|emb|CAW28862.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310878931|gb|EFQ37525.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 304 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 18/300 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + ++ F V GS + AAE++ LS+S IS+++S LE +G++L YR R + T Sbjct: 1 MSLRLEDIQAFLNVVELGSISAAAERMSLSKSVISKRVSDLERHLGVRLLYRSTRNVEPT 60 Query: 61 EQGSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E G ++ L + L+E+ + G+LR+ + G L + EF+ Sbjct: 61 EAGGFFYKSAKASLQDLNNAAESVALRENDL--CGELRVMAPMSFGTLWLGPLVMEFMAR 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 P +++ L LD++ +D + D AIR+ + +Q SSLI R+L T +P YL+ Sbjct: 119 NPRLEVVLQLDDRIVDFEKEGYDLAIRITR-LQDSSLIARQLGTSRRVVCCSPEYLERHG 177 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RI----SCLQVNSYLSIMQ 233 I+++ H I + P + F R GEP R+ N+ ++ Sbjct: 178 PLQRIEDILCHPCIGYSHNTPSQLWSFE-----PRVAGEPARMITPRGRFNTNNGQTMRD 232 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 V G G+A+LP +I ++ R++E + +Y Y A + K+K F F+ Sbjct: 233 AAVRGLGLAMLPLFIAAEDLAAGRLVEALPQERPLDDLIYAMYSRAATLSPKVKLFVQFL 292 >gi|251789721|ref|YP_003004442.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247538342|gb|ACT06963.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 297 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 8/270 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G +L Sbjct: 9 LTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEARLGLRLLSRTTRSVAPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H L+T L E +PSG LRI T + +L +K L PDI I++ Sbjct: 69 AKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIHIEVN 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ +D+ + D IRL I + R I M A+P YL P + EL Sbjct: 129 VDHALVDVVANQFDAGIRLGGDIDKDMIAVRIGPDIPMAIVASPAYLARHPAPTTPAELF 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H+ I F +P W L + R I L VN+ ++ + G G+A + Sbjct: 189 DHSFINF--RLPTSGTLIGWPLMSDGREIRVRGQGQLVVNTIDLLVDAVLDGHGLACIHL 246 Query: 246 DYIVK--DNPNLVRIMEDVI--TPSFTVYF 271 D + + DN +L++++ + P + +Y+ Sbjct: 247 DQVQRFIDNGSLIQVLSGLTRDIPGYHLYY 276 >gi|220933474|ref|YP_002512373.1| Carbonate dehydratase [Thioalkalivibrio sp. HL-EbGR7] gi|219994784|gb|ACL71386.1| Carbonate dehydratase [Thioalkalivibrio sp. HL-EbGR7] Length = 305 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 25/295 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +G F AA++L +S++ +S+ + LE +G +L R R ++LTE G + Sbjct: 7 MSTFVEVVNAGGFAAAAQRLGVSRAQVSKAVMRLEAHLGTRLLNRTTRRISLTETGRVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +++ + E S +P G+L ++ G LQ + E++ YP++Q+ L Sbjct: 67 ERCRDILEEIDEIERIAGEQSDRPRGRLTVSAPTSFGILHLQKLIPEYITAYPEVQVSLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D AIR+ + ++ SSLI R++ A+P YL P Q+L Sbjct: 127 LSDRFVDVVAEGFDLAIRIGE-LEDSSLIARRIAPSRRVFCASPEYLARQGTPKVPQDLA 185 Query: 188 KHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVL-GSG 240 H LI DL P W T+ P G ++VN + I++ L G G Sbjct: 186 IHACLIYANDLKPD-----TW--TLHGPRG---TESVKVNGPVCADNGDILRASALAGLG 235 Query: 241 IALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LLP +IV P+L +++ +++ YP + K++ F F+ Sbjct: 236 VTLLPTFIV--GPDLASGRLQQVLHAYCPADISIHAVYPSRRYLSAKVRTFVEFL 288 >gi|241113060|ref|YP_002972895.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861268|gb|ACS58934.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 305 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 135/276 (48%), Gaps = 9/276 (3%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 S+ AA +S S+I + ++ LE+ +G++LF R R ++LTE+G+ L+ + ++ Sbjct: 18 SYVAAARVGGVSPSAIGKAVARLESRLGVRLFNRTTRSISLTEEGAVLYERYKRIIDDMD 77 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + + S +P G+LR++ +G +LL L F +P+I++ + ++K ID+ + Sbjct: 78 DAEATISRSRERPRGRLRVSVPHIVGHHLLMPILPVFAEQFPEIELDIDFEDKVIDLVAE 137 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D +R + + + LI R L H +P YLK P + +L +H I F Sbjct: 138 GLDVVVRSGE-LADARLIARHLGDQHFVVCGSPDYLKRHGRPETPDDLSQHACIHFK--Y 194 Query: 199 PKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PN 254 P W RP P L +N+ + ++ G G+A LP Y+ + + + Sbjct: 195 PSSGRVAPW--AFRRPCERLPLPRGLTLNNTDAGLRAARDGLGLAHLPVYVAEPHMRTGS 252 Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV ++ + P ++ +P + + K++AF +F+ Sbjct: 253 LVPVLTSFMVPYGSLSLVWPSNRQLSPKVRAFVDFV 288 >gi|34495964|ref|NP_900179.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34101818|gb|AAQ58186.1| probable transcriptional regulator LysR family [Chromobacterium violaceum ATCC 12472] Length = 298 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 15/288 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF VA GSF A L +S S++ ++IS LE ++G++L R+ R L LT +G + Sbjct: 6 ELAVFIAVAEQGSFVGAGRVLGVSASAVGKRISRLEVDLGVRLLQRNTRSLALTAEGETV 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + E+ ++ L+ SS +P G LR++ G +L L F YP++ ++L Sbjct: 66 LSRGRSLLDEAESLRVVLERSSRQPGGVLRLSLPPIGG--VLMAELAAFRQRYPEVALEL 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++DI + D AIR+ L L AAP YL +P S +L Sbjct: 124 DYSERNVDIIEEGFDAAIRV-GAGDDGKLRSLALPGFRRLIVAAPDYLVRHGQPRSAAQL 182 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H LI + P + W L + P L NS + + + + G GIA LP Sbjct: 183 AEHQLIHYRS--PNSGKLEAWPLVNAELP------RALVCNSVHARLDFALQGQGIACLP 234 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D ++ ++ +L ++ + +P + + +++AF F+ Sbjct: 235 DISIRRELEDGSLRPLLGSENGEKVVLRLLWPSSRGLSARMEAFLGFM 282 >gi|332991888|gb|AEF01943.1| putative transcriptional regulator [Alteromonas sp. SN2] Length = 291 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 8/256 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F VA +GSFT AA +L S + ISR+++ +E +G+KLF R R ++LT+ G Sbjct: 3 WEGIVEFCAVASTGSFTAAATKLDTSGAQISRKVANVEKRLGVKLFNRTTRSVSLTQAGH 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 LE ++ + P G +++ + G+ + + +FL Y I++ Sbjct: 63 IYFEQCQPALKALEEAELNTSQLQKVPQGLIKLTAPVAFGEAFIAPLINQFLKKYEGIEV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + N +DI + D AIR+ ++ S+L+ +KL T ++ A+P YL EP Sbjct: 123 ECRFTNDTMDIIDEGYDLAIRIGN-LEDSTLVAKKLATRQLYVCASPEYLNVFPEPKRTD 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H + P + A R G ++ NS ++ + G G+ L Sbjct: 182 MLSEHQCLVGSQ--PHWRFNHEGQAQTVRVKGR-----VKYNSGNALHHAALAGLGLVQL 234 Query: 245 PDYIVKDNPNLVRIME 260 P + V+++ + +++E Sbjct: 235 PGFYVRESLAVGKLIE 250 >gi|301382204|ref|ZP_07230622.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302134277|ref|ZP_07260267.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 299 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 134/286 (46%), Gaps = 13/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF +A GSFT AE + + + ++R I LE + ++LF R R + LT +G + + Sbjct: 1 MQVFAKLAELGSFTRVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 RV S + ETT + + S G+LRI + Q L+ F +PDI + L Sbjct: 61 ERVKSNLADLAETTSMFDRNGSTL-RGRLRIDIPVAFSQRSFMETLRGFTRAFPDIDVVL 119 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ + DCA+R+ + + SSL+ R + M AAP YL+ P ++++L Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLEDL 178 Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H ++F L + W L D P P + VN + +Q + G GI Sbjct: 179 KRHCGVSF--LSGQNNRPLPWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGILQ 234 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P V+ + LV ++E V YP +++AF Sbjct: 235 APGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAF 280 >gi|167590777|ref|ZP_02383165.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 305 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + +GS T A++ L+ +S +S LE +G +L R R + LTE G + Sbjct: 7 MRVFTRIVETGSLTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRIALTEDGRAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +++ + + ++ P G+L++ + + ++ L FL +P I I+L Sbjct: 67 ERCVAVLREIDDMEASVSQARNAPRGRLKVNLPPAMAKQIMVPALPAFLAAHPSITIELG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ + DC +R+ + S LI +++ ++ A+P YL+ EP ++++L Sbjct: 127 VTDRQIDLVGEGVDCVVRV-GALDDSGLIAKRIGSLTTCTCASPAYLERFGEPETVEDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 +H + + W VD GEPR+ + VN + + V G G+ Sbjct: 186 QH--VAVSHISADTGRPRAWEYIVD---GEPRVMQMCGTVAVNDADTYIACGVAGIGLIK 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V + L ++ TP+ + YP KLK F +++ Sbjct: 241 TSLYLVDPYLKSGELREVLTGFNTPARPISVLYPPNRHVPAKLKLFVDWL 290 >gi|293395466|ref|ZP_06639750.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422150|gb|EFE95395.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 298 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 11/292 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F V + GS AA +L S +++R ++ LE VG +L R R L TE G + Sbjct: 5 DELAIFVAVVQQGSLAAAARKLRRSAPAVTRAVASLEQRVGARLVERTTRRLAPTEAGLR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + Q L + + SG LRI + G+ + + FL YP I I+ Sbjct: 65 LAERACAVLGDYQ--QAVLDTAPTQVSGLLRITAPVQFGRKFVAPIVMAFLEQYPQIDIE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+++++D+ + D A+R+ SS + R+L + A+P YL C EPL+ + Sbjct: 123 MQLNDRNLDLIDEGLDIAVRIGHQ-HDSSRVARRLGWVRRVTVASPAYLARCGEPLNPAQ 181 Query: 186 LDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+ I G E F +R PR L +N S + G GIA L Sbjct: 182 LTDHHTI-IGTQHGALREWRFGPQENHERVRLTPR---LMLNDVESQLLAARAGQGIARL 237 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 Y V D+ +LVR++ + V + + K++ F +F F + Sbjct: 238 LSYQVADDLAAGSLVRVLTSFEPQALPVQLVANQVQQMPLKVRTFWDFAFAQ 289 >gi|237808732|ref|YP_002893172.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237500993|gb|ACQ93586.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 317 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 15/290 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F AR GSFT AA + ++ +++S+ ++ LE +G++L R R L+LT +G+ Sbjct: 13 FVHAARLGSFTAAARLIDVTPAAVSKNVAALEASLGVRLMNRTTRSLSLTAEGTLFLSQA 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 LE L + P G +R++ +G+ LL L + L L+P + ++L D+ Sbjct: 73 QLALESLEQAVESLTTAKSNPVGLVRMSVPNVIGRRLLMPVLPDLLALHPGLNVELDFDD 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D + D +R I SS+I R L + + A P YLK P +L KH Sbjct: 133 RLVDFVQEGYDLVVR-GGTIHDSSMISRSLGPLKLGLVATPDYLKKFGVPKQPGDLSKHK 191 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGIALLP 245 LI+ L K W T +P G EPR + + ++ +++Q + G GIA + Sbjct: 192 LISRRFLGSKLSP---W--TFHQPDGKVFLFEPRSTAITLSDPEAMIQAALSGLGIAEVG 246 Query: 246 DYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIF 291 Y+ + + L I+ D P +F + YP +++A +F+ Sbjct: 247 IYLAWEHLQSGALKLILHDSHDPGAFELMLQYPHRALLAPRVRATADFLL 296 >gi|149910258|ref|ZP_01898903.1| hypothetical transcriptional regulator, LysR family [Moritella sp. PE36] gi|149806727|gb|EDM66692.1| hypothetical transcriptional regulator, LysR family [Moritella sp. PE36] Length = 297 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 138/288 (47%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A++ + T AA QL +S ++ S + LE ++G++LF R R L +T +G + Sbjct: 6 LTLFVRTAQTCNITAAALQLDMSPAAASAALKRLEKQLGVQLFIRSTRKLRITAEGERYL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +E LE + L E K +G++R++T+ DLG+N++ L E + YP++ IQL Sbjct: 66 VHCTEALAALEKGKASLNEMQGKIAGEIRLSTSSDLGRNIVLPWLDEMMDAYPELSIQLN 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D D D A+R +P + SSL+ + I A+P YL EP EL Sbjct: 126 VGDSLADFFHDKVDMALRYGEP-EDSSLVAFLIAKIDRVVCASPQYLAQYGEPQHPNELS 184 Query: 188 KHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +HN L FG+ + + + + R+S N + ++ V G GI + Sbjct: 185 QHNCLLYRFGERVYDTWPFSDHAGKYNVKVSGNRLS----NDADVVHRWVVAGKGITMKS 240 Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + +V ++ + +P+ +++ P + T + R+ + Sbjct: 241 RLDMAADLRAGYVVELLHNFNSPAISLWLICPNRTQVTPAMLMLRDLL 288 >gi|73539470|ref|YP_299837.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72122807|gb|AAZ64993.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 304 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 123/269 (45%), Gaps = 10/269 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F + F+ AA +L L+ SS++R + GLE +G L R R +T+TE G+ + Sbjct: 7 LKMFVETVDAKGFSAAARRLDLATSSVTRALDGLEASLGAVLLNRSTRQITVTEAGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E + + +P G+LR++ + G+ + L +L YP +++ + Sbjct: 67 QRARRILDAVEEADALIADRGEEPVGQLRVSLPVAFGRRCIAPYLGGWLAKYPQLEVDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D ++RL P +++ R++ A+P YL++ P +L Sbjct: 127 LTDDIVDLVGERVDLSVRLGSPASYDNVVAREIGRFRRRVVASPAYLESRGCPDDPVDLV 186 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + F D W D P + N+ + + G+GI LLPD Sbjct: 187 NHRCLRFS----YGTRDQVWTFRQGDSETKVPVSGHFRSNNIDVLRDIALAGAGIGLLPD 242 Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPE 275 +++ ++ R+M P F + P+ Sbjct: 243 WLIDEDIESQRLM-----PLFDAWSVNPD 266 >gi|260469868|ref|ZP_05814013.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259028358|gb|EEW29689.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 296 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 140/301 (46%), Gaps = 25/301 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-- 64 +L V VA+ GSF AA++L ++ S++S +S LE +G++L R R + TE+G+ Sbjct: 8 QLAVLATVAQCGSFRGAAKELAIAPSAVSHAVSSLEARLGVRLLSRSTRSVAPTEEGARL 67 Query: 65 --KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +L SE+ LET E+ +P+G LR++ +L L F YPDI Sbjct: 68 LERLRPALSEIDLALETA----VEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAAAYPDI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++++++ D+ D +RL + +Q + R I AP Y + P Sbjct: 124 VLEIVVEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDIRGAVVGAPSYFEAMPIPRH 183 Query: 183 IQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 ++L H I F G L + W R E + L ++ I Q V Sbjct: 184 PRDLADHRCIRFRFSSGIL-------YRWEFEKGREAIEMAVEGPLILDEDHLIAQAAVD 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFIFLK 293 G+G+A + + V+ + L+R++ED PSF +F YP + L+AF +F + Sbjct: 237 GAGLAFVFEPYVRAPLADGRLIRVLED-WCPSFDGFFVYYPSRRQMRPALRAFVDFFKVS 295 Query: 294 A 294 A Sbjct: 296 A 296 >gi|241765020|ref|ZP_04763015.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241365378|gb|EER60177.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 307 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 16/282 (5%) Query: 6 DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F VA GS T AA+ ++ + + R++ LE +G+KL R R ++LT + Sbjct: 2 DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRISLTHE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + E VK +G LRI G+ + + F +PD+ Sbjct: 62 GSAFLEDCQRLLSDVANAEASVSEGGVKATGHLRITAPAGFGRRHVAPLVPRFRTAHPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L ++ +D++ + DCA+R+ + SSL+ ++ A P YL+ P Sbjct: 122 TISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLQGHGTPRH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCV 236 EL H+ +T L + + W + G + L+ L + +C+ Sbjct: 181 PAELSAHDCLT---LSSEASQTRGWAFRMPTDGGGSEVVHLKPGGPLDCSDGQVLHDWCL 237 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 G G+A + V+ LV ++E+ P +Y +P+ Sbjct: 238 AGYGLAWRSTWEVESEIAAGRLVEVLEEFAAPPNGIYVVFPQ 279 >gi|238561297|ref|ZP_00442128.2| putative HTH-type transcriptional regulator YhjC [Burkholderia mallei GB8 horse 4] gi|238524723|gb|EEP88154.1| putative HTH-type transcriptional regulator YhjC [Burkholderia mallei GB8 horse 4] Length = 267 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 6/238 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RVF V +FT AA+ L + +SS+S I LE VG +L +R R +T T+ G+ Sbjct: 33 DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 92 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E + + S V PSG LR+ +G+ ++ L EFL YP I ++ Sbjct: 93 LYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 152 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 153 LGVTDRAVNLIEERVDCVLRVGT-LSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 211 Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L++H + + + + W+ V R R++ VNS + + C+ G G+ Sbjct: 212 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGL 266 >gi|229589030|ref|YP_002871149.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360896|emb|CAY47756.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 301 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GS + AA+ L LS+ +SR ++ LE VG +L +R R L+LT G + Sbjct: 7 MRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLLHRTTRKLSLTAAGGETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ Q + E P G LR++ + GQ L + E++ YP + + L Sbjct: 67 PRCRQLLELCCDMQAAVSEPDDAPRGLLRLSVSTSFGQAQLAEAIAEYVKRYPLVTVDLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +++ + D AIR + +LI R+L A+P YL+ P ++EL Sbjct: 127 MLDRTVNLVDERIDLAIRTSNDLD-PNLIARRLTVCRSVVCASPAYLRAHPAPRKVEELA 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 HN +T FG K + F V PI + N ++++ + G+G+++ Sbjct: 186 AHNCLTHSYFG----KSLWHFEEGGEHVSVPIN----GNITSNEASTLLRVTLAGAGVSM 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 LP Y D LVR++ + +Y Y L++ +F+ L+ Sbjct: 238 LPTYQAGDYIRRGELVRLLPEAEPRQMNIYAVYASRKHMPSALRSLLDFLVLR 290 >gi|160897737|ref|YP_001563319.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363321|gb|ABX34934.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 314 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 15/294 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ R+F VA GSF AA L L ++++S + LE +VG +L +R R ++LT G++ Sbjct: 9 DRYRIFMQVAEMGSFIKAAHALDLPRATVSAAVQQLEEQVGARLLHRTTRQVSLTADGAQ 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + E + Q + + +G+L + + + LL L + +P +Q+ Sbjct: 69 LLERVRPLLSEAEDVEQMFQARTRQATGRLHVDVPSRIARRLLAPALPGLMRRHPGLQLV 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DCA+R+ + SSL+ R L I + A+P YL+ P ++ Sbjct: 129 LGSSDRAIDLVQEGVDCAVRV-GTLHDSSLVVRPLGCIALINCASPAYLREHGLPEQPRD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVNSYLSIMQYC 235 L H + G P+ + W + VD P S + N+ S + C Sbjct: 188 L-LHGHWSVGYASPRTGRELPWEWSGASDVDGVNGVDGPQTLAVPSRVVTNNAESYIACC 246 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+ +P Y V+ D LV ++ V YP + + +L F Sbjct: 247 RAGLGLIQIPRYDVQHLLDTGELVEVLPAHRAAPMPVALLYPHRRQRSRRLAVF 300 >gi|325523061|gb|EGD01473.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 304 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 13/292 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +A SFT AA ++ +S++++S+ + LE ++ +KL YR R ++LTE G +L+ Sbjct: 12 FVHIAHHLSFTKAAAEMGVSRAALSQNLKALERQLNVKLLYRTTRDMSLTEDGQRLYDTL 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +E L E +PSG LRI T+ + LL+ +L EF+ YP ++++L++D+ Sbjct: 72 RPAFGSIEAALRNLHEVRHEPSGLLRINTSRVAARTLLEPHLGEFMARYPLLRVELVMDD 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I D D IRL + + + + M P Y P + +L HN Sbjct: 132 GLSNIIADGYDAGIRLGESLAEHMVAVPITPMLEMVVAGTPDYFARHGTPATPADLIGHN 191 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + + + + W T G EP+ S + N +++ + G G+ Sbjct: 192 CLCYRHTTSGAI--YRWEFTSSEVEGHAFEVEPQGSVV-TNDDDGMIRAALQGIGLIQHQ 248 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFIFLK 293 D ++ D LVR++ P F Y+ Y P + K++A +F+ K Sbjct: 249 DIALREHLDAGTLVRVLAPWCKP-FPGYYLYTPSREQMPAKVRALMDFLVEK 299 >gi|262373106|ref|ZP_06066385.1| transcriptional regulator [Acinetobacter junii SH205] gi|262313131|gb|EEY94216.1| transcriptional regulator [Acinetobacter junii SH205] Length = 303 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 12/294 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + +F +VA SF+ AA + +++SR I+ LE + LF R R + LT QG Sbjct: 10 FSSVELFCLVAEYESFSKAALHAGVGPAAVSRSIARLEKHLATPLFVRTTRQVRLTTQGK 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +++ + +L+ + +PSG +RI+ G + L +F YP IQ+ Sbjct: 70 IYFDECKQALNQILEAEQQLKNQTQQPSGLIRISVPTPYGHYRILPLLAKFSQQYPSIQV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L NK++D + D AIR R+ S+LI R+L + A+P YLK P S++ Sbjct: 130 DVQLTNKNVDFIAEGYDLAIRGRQ-FADSNLIARQLEQAELIVVASPEYLKQFGTPQSLE 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 +L H I F ++P ++ WL ++ + E I CL + L + +G Sbjct: 189 DLQHHQCIQF--VLPSTGKNVPWLFNSNQQLIEYQSAGNIRCL--DDILGTVTLAKHSAG 244 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + +IV++ N +L+ ++ + S YP + ++ F +F+ Sbjct: 245 LLQTYRFIVENELKNGDLIEVLTEFSGTSRPFSLLYPSKKHESFHIRVFIDFLL 298 >gi|227823451|ref|YP_002827424.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] gi|227342453|gb|ACP26671.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 297 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 147/292 (50%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G L R R +LTE G Sbjct: 6 RIRAFIDVVDAEGFSAAARRVGKSKALLSKYVRELEDELGALLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA---TTID--LGQNLLQGNLKEFLLLYPD 121 +R SE+ +++ ++ ++ G+LRI T +D +GQ+L+ +F +P+ Sbjct: 66 YRSASEILKEIDNLADLVRANNSDLRGRLRITVPRTFVDAEIGQSLI-----DFGRQHPE 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++++ D++ +D+ + D A+R+ + ++ S+LI RKL + A+P +L+ Sbjct: 121 LSLEIVSDDRFVDLVEEGFDVAVRITR-LEDSTLIARKLDDFQVLLCASPGFLEKVGPLT 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL K I D + ++ ++ P P ++VNS L+ ++ V G G+ Sbjct: 180 HPSELSKIPCIL--DTNGRSYSNWRFIEPDGSPFSVPVSGPMEVNSPLASVRAAVTGMGV 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A +PD+I + + LV + +D + +Y YP K++ F +F+ Sbjct: 238 APVPDFIARPKIQSGELVTLFDDYLPRDRGIYAIYPHRRYLPTKVRTFVDFL 289 >gi|262173152|ref|ZP_06040829.1| transcriptional regulator LysR family [Vibrio mimicus MB-451] gi|261890510|gb|EEY36497.1| transcriptional regulator LysR family [Vibrio mimicus MB-451] Length = 295 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 126/280 (45%), Gaps = 17/280 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 SGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+IQLI + R + S S L YA+P YL+ P Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTPK 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 ++QEL +HN++ +G+ + + + T RI+ + ++ G Sbjct: 181 TLQELTQHNVLCWGE------QTYREVKTAQ----GKRITLTGNFATTNPEALFYAGKAG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G+ + ++K+ NLVRI+ DV TVY YP+ Sbjct: 231 MGVIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPK 270 >gi|194436874|ref|ZP_03068974.1| LysR substrate binding domain protein [Escherichia coli 101-1] gi|194424356|gb|EDX40343.1| LysR substrate binding domain protein [Escherichia coli 101-1] Length = 295 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 24/284 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F V R GSFT AA++L L+QS ISR + LE +G++L R R L+LT G Sbjct: 7 NYNDLYLFMQVVREGSFTAAAQRLGLAQSGISRAVRELEERLGVQLLVRTTRKLSLTHAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L+R + L+ L PSG +RI + +L L F YPDI+ Sbjct: 67 ELLYRNVESGFDALDMGLATLAHYRHTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D IRL + S + R + M P + + P + Sbjct: 127 LELISESRFVDIITERFDAGIRLGSEVDSGMVAVRISPDMEMAVVGTPGHFQRYGFPQTP 186 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H I FGD + W D + +P+ +SY+ + LG Sbjct: 187 TDLVGHPCIAYQFGD-----GSLYAWELNQDGKKITHQPQGQWAFADSYME-AKAARLGL 240 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280 G+A +P+ +V D+ L+R+++ CY + L+ + Sbjct: 241 GLAYVPEELVSDDIEQGALIRVLQ-----------CYSQRLEGS 273 >gi|227818388|ref|YP_002822359.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227337387|gb|ACP21606.1| putative LysR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 301 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 13/287 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + F A +GS + A+ +L L++S +S +++ LE +G KL R R L+LTE G Sbjct: 4 FDGIAAFVATAEAGSISAASRRLGLAKSVVSERLAELERILGTKLIQRTTRKLSLTENGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + EL S K +G LR++ + G L L +F+ +P I++ Sbjct: 64 TFLPRAQRILREADEAAAELAARSGKLAGPLRLSAPVSFGILHLAPALTKFIQEHPQIEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + LD++ +D + D +R I S LI R+L T A+P YL+ P SI Sbjct: 124 SVELDDRFVDAAAGGFDAVLR-HGAIGDSRLIARRLATSRRLLVASPAYLEREGHPASID 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I + M + +W + + + P+ + L+ N+ L + + + G GI Sbjct: 183 ELQHHCGILY------SMREGDWRFSTEHGWQVVRPK-AALRANNGLVMREAAMAGLGIT 235 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LLP + + + + LV I ++ YP + K++A Sbjct: 236 LLPTFFIHEAVKSGVLVPIDVGARAEGAELFITYPRDHGASAKIRAL 282 >gi|172060447|ref|YP_001808099.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992964|gb|ACB63883.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 301 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 141/298 (47%), Gaps = 9/298 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE+++G++L +R R TLT+ G Sbjct: 5 DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E + + + G LR+ +LG+ + + F +P++ Sbjct: 65 AQFHAQVLRILAEVERAETLMSDRRGTVGGVLRVTAPGELGRLRIAPLIAAFQRRHPELI 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + S++I R+L H A+P Y+ P Sbjct: 125 VQLMLTDAIVDLLAHDIDIAVRI-GSLADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H I GD P+ F+ V + + L N + + G+GIAL Sbjct: 184 AELRAHRCIVMGDQ-PRADWRFDGAHGV---VAVEVTAALLTNDGGAARTLALEGAGIAL 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-W 297 + V D LVR++ P+ ++ YP +++AF +F+ + RD W Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFLREQLRDAW 297 >gi|66047029|ref|YP_236870.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63257736|gb|AAY38832.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 297 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L ++ S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W R + NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +PD + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|15799985|ref|NP_285997.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 EDL933] gi|168749126|ref|ZP_02774148.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4113] gi|168755828|ref|ZP_02780835.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli O157:H7 str. EC4401] gi|168761919|ref|ZP_02786926.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4501] gi|168769629|ref|ZP_02794636.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4486] gi|168775425|ref|ZP_02800432.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4196] gi|168782626|ref|ZP_02807633.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4076] gi|168788546|ref|ZP_02813553.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC869] gi|168799806|ref|ZP_02824813.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli O157:H7 str. EC508] gi|195937760|ref|ZP_03083142.1| putative transcriptional regulator [Escherichia coli O157:H7 str. EC4024] gi|208809313|ref|ZP_03251650.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815571|ref|ZP_03256750.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4045] gi|208823112|ref|ZP_03263430.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4042] gi|209399565|ref|YP_002268902.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4115] gi|217326004|ref|ZP_03442088.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254791439|ref|YP_003076276.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|261255953|ref|ZP_05948486.1| putative transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|12513063|gb|AAG54605.1|AE005205_3 putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|187769091|gb|EDU32935.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4196] gi|188016509|gb|EDU54631.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4113] gi|188999848|gb|EDU68834.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4076] gi|189356957|gb|EDU75376.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli O157:H7 str. EC4401] gi|189361299|gb|EDU79718.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4486] gi|189367656|gb|EDU86072.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4501] gi|189371652|gb|EDU90068.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC869] gi|189377882|gb|EDU96298.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli O157:H7 str. EC508] gi|208729114|gb|EDZ78715.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732219|gb|EDZ80907.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4045] gi|208737305|gb|EDZ84989.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4042] gi|209160965|gb|ACI38398.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. EC4115] gi|217322225|gb|EEC30649.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254590839|gb|ACT70200.1| putative LysR-like transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|320192400|gb|EFW67044.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC1212] gi|326338844|gb|EGD62662.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7 str. 1125] gi|326343452|gb|EGD67216.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7 str. 1044] Length = 294 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ T+ + L+ L PSG +RI + L L F YPDIQ Sbjct: 66 EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239 +L H I F D + W L D+ I +P +SY+ + LG Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHQPEGQWAFSDSYME-AEAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G+A +P +V D+ L+R+++ ++ YP Sbjct: 240 GLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277 >gi|317049976|ref|YP_004117624.1| LysR family transcriptional regulator [Pantoea sp. At-9b] gi|316951593|gb|ADU71068.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 310 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 140/291 (48%), Gaps = 16/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F + SGS + AA QL +Q +ISR++ LE +G+KL R L LT+ G + + Sbjct: 13 MQTFIRIVESGSLSAAAAQLGTTQPTISRRLQALEQRLGLKLILRTTHALKLTDDGERCY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + EL +S P G LR+ GQ+ L L ++L YP + ++ + Sbjct: 73 QQARQLLATWYALEDELTGASDDPVGTLRVRAPHAFGQDQLVAPLVDYLQRYPRLNVEWM 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ D + DCAI++ P S++ L + AAP L +++++L Sbjct: 133 LNDRTPDFVAENVDCAIQVGAPT-DPSVVAILLAEVPRFVVAAPSLLAAHPPVMAVEQLP 191 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + G++ + + D + V+ I PR++ +S ++ + + G G A Sbjct: 192 NLPWLALTSFYHGEIALQRLSDGH---PVNLAI-SPRLAS---DSLYAVRKAALAGMGAA 244 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++V+++ +L++++ + P V+ YP A +L+ F I Sbjct: 245 VVSSWVVQEDLARGDLIQLVPEWQAPPLPVWLTYPWASYYPARLQKFFAMI 295 >gi|116252847|ref|YP_768685.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257495|emb|CAK08592.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 303 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 138/306 (45%), Gaps = 19/306 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F D L VF + R G F AA + +S S++S+ I+ LE +GI+L R R ++ TE Sbjct: 4 FRLDSLDVFAAIVRCGGFRAAALERGVSSSALSQTINALEEALGIRLLNRTTRSVSPTEA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + +L + PSG LRI +LL + F+ YPDI Sbjct: 64 GQRLLQRLGPALTDIRLAVDDLNQLKENPSGTLRINAPGPAIDHLLCPAMFTFMDTYPDI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++LI D IDI D +R K + + ++ A+P Y+ PL+ Sbjct: 124 KVELISDAAVIDIVEQGFDAGVRFGKQLAQDMIAVPLGPSLRYAIVASPDYIAKHGLPLT 183 Query: 183 IQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L HN I G L+ E V + E R L V+S + +Q V G Sbjct: 184 PNDLAGHNCIRRRFPGGTLVSWKFEKGGDALEV---LPEGR---LTVSSAHNELQAAVAG 237 Query: 239 SGIA-LLPDYIVKD--NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+A + DY D N L +++D + PS+ +Y YP ++ ++ + FL+ Sbjct: 238 CGLAHIFEDYATPDLTNGRLTEVLKDWTPLLPSWYLY--YPSKRHSSAAMRELVS--FLR 293 Query: 294 ARDWKF 299 + DWK Sbjct: 294 SYDWKL 299 >gi|283787836|ref|YP_003367701.1| LysR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282951290|emb|CBG90985.1| LysR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 299 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 11/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L L + S+SRQI LE +G +L +R R + LT+ G + Sbjct: 7 MQLFIRVAELESFSRAADALGLPKGSVSRQIQALENALGTRLLHRTTRQVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ LE Q + SGKLR+ + + +NLL L FL +P I+++L Sbjct: 67 ERAKELLSNLEELDGLFQYDTASISGKLRVDMPVSVARNLLIPRLPAFLQQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ Q + LI R L + + A+P YL+ P S+ +L Sbjct: 127 SSDRLVDVIREGFDCVVRVGTQ-QDAGLIARPLGKLTVINCASPQYLERFGYPESLDDLA 185 Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H ++ + P E T G L VNS + C+ G GI Sbjct: 186 SHAVVHYSINSATRPSGFEIVTLAGTQWIKTG----GTLTVNSTETYHAACLAGLGIIQT 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P V++ LV I+ V YP Sbjct: 242 PRVGVREALRRGALVEILPQYRAAPLPVSLLYP 274 >gi|271501127|ref|YP_003334152.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270344682|gb|ACZ77447.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 304 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 135/279 (48%), Gaps = 15/279 (5%) Query: 1 MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M D+L + F A +GSF+ A L L Q ++SR ++ LE + +L +R R L Sbjct: 1 MGLRMDRLLLMTCFVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT +G + + + +E ++ +E +V P+G LR+A L L ++ +FL Sbjct: 61 SLTPEGERYYLEARRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLE 119 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP++ + L ++++ I++ + A+ AIR+ ++ S++ R+L A+ YL Sbjct: 120 RYPELTLDLQINDRYINLIDEGAELAIRIGH-LEDSAMRARRLGMFERVCVASNKYLAKH 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P ++L KH+ + + L F + I P L+VNS ++ ++ Sbjct: 179 GTPNIPEDLKKHDCLIYTLLTTGATWRF-------QDINVPVSGRLRVNSPEAVQKFVNA 231 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G GIA P+++ ++ N NL ++ D P + Y Sbjct: 232 GVGIAQGPEWLFEEGLANGNLQLLLTDYTAPPVPIQAVY 270 >gi|317053836|ref|YP_004117861.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316951831|gb|ADU71305.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 307 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 14/275 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL- 66 L F VVA SFT AA +L SQ ++S+ + LE +G++L R+ R + +TE G +L Sbjct: 9 LAAFLVVAEEKSFTRAAARLSTSQPALSQTVRRLEERLGVRLLIRNTRNVAVTEAGEQLV 68 Query: 67 ---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S++ H+L+ L + KP+G +RI L+ ++E L YPDI Sbjct: 69 NTLRPALSDIDHRLQA----LSQFRDKPAGTVRITAGQHAADTLIWPAIREVLHTYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L LD+ DI + D IRL + ++ + R + M P Y P S Sbjct: 125 IELSLDSALTDIVSERFDAGIRLGERVELDMIAARIGPDLRMAVVGTPDYFAKHPIPKSP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I +P + W + +R + VN+ ++ ++ G G+A Sbjct: 185 HELPHHTCINI--RLPSSGGIYAWEFSQGERELNVRVDGQFIVNNIVAALKAAEAGVGLA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 ++ + +V+ + LVR++ + P + YP Sbjct: 243 MVMEDMVEAQLEEGKLVRVLAEWCAPFAGYHIYYP 277 >gi|170703933|ref|ZP_02894604.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|171320182|ref|ZP_02909243.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|170131160|gb|EDS99816.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|171094563|gb|EDT39616.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 315 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 18/295 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YPD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P Q+L Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPARPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H +T L W+ + + ++ +Q N+ S+ G GI +LP Sbjct: 186 GAHACLT---LCTPAFPTHEWVLEGAGGVEQIHVAGPVQTNTAESLALAIRDGIGIGMLP 242 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 Y D + LVR++ + I VY YP R F+ K R W Sbjct: 243 LYSAIDALRDGTLVRVLPEHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|170020305|ref|YP_001725259.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739] gi|300916452|ref|ZP_07133190.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|169755233|gb|ACA77932.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739] gi|300416253|gb|EFJ99563.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] Length = 299 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|86157404|ref|YP_464189.1| LysR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773915|gb|ABC80752.1| transcriptional regulator, LysR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 311 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 139/291 (47%), Gaps = 18/291 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW L F ++RSGS AA++L + ++++ R+++ LE E+G+ LF R +G T Sbjct: 21 LDWGNLLFFLELSRSGSLARAAKRLGVDRNTVGRRVAALEDELGLPLFERGPQGWACTAA 80 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + S V + P+G +R+ T++ + +LL + +P + Sbjct: 81 GEELAALASRVEEDVLAIARHADARDRTPAGTVRLTTSVPVASHLLAPAVPSLRARHPRL 140 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + D ++ D++ AD A+RL +P + L+ RK+ ++ Y +P + + R Sbjct: 141 LLDVSADFRNYDLTRREADLALRLGRP-SDAGLVARKVASVAYGFYGSPAFAEERR---G 196 Query: 183 IQELDKHNLITF-GDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L + ++ + G P + M+D + R+ + N+ L++ G Sbjct: 197 RMDLARDPVLAYEGATSPQERWMDD----------LAPARLVPFRCNTSLALAAAARTGL 246 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G A+LP ++ +P LVR ++ PS+ ++ L+ +++A ++ Sbjct: 247 GAAVLPCFVADGDPALVR-LDGPEPPSYDLWLLVHGDLRRVPRVRAVIEWV 296 >gi|91779296|ref|YP_554504.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691956|gb|ABE35154.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 303 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 16/295 (5%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F + + SF+ AAE L L +SS++ I LE E+G L R R L+LT+ Sbjct: 2 DKLQAMATFVRIVEAQSFSKAAETLSLPRSSVTTTIKSLERELGTTLLRRSTRTLSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + EL + P G++R +G+ ++ L EF +P I Sbjct: 62 GERYYMSCRAILAEIARVEGELSADTASPRGRVRADMPGVIGRAMVLPRLHEFAQRFPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ D+ D DC IR + + SSL ++L + A+P YLK EP + Sbjct: 122 ELVLGLSDRPADLIYDGIDCVIRTGE-LADSSLTAQRLGELSWITCASPRYLKAHGEPAT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 + L+ H+ + + + +W V GE +Q VN + +Q + G Sbjct: 181 VSALNDHHAVNY--ISNATGRPLDWRFHVQ---GEDLAIAMQSRFAVNETEAYLQCGLEG 235 Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ L +++ + L ++ + + V YP +G + F ++I Sbjct: 236 LGLIQLSEFVALPYLKSGRLKEVLATARSSAVPVSIMYPHGRNASGATRTFVDWI 290 >gi|113970198|ref|YP_733991.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|114047613|ref|YP_738163.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113884882|gb|ABI38934.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] gi|113889055|gb|ABI43106.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 301 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 144/286 (50%), Gaps = 37/286 (12%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F +V GSF AA + + ++S+SR+I LE ++G KLF R R L+LT G Sbjct: 4 NDLRLFLLVVELGSFASAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLTPTGEN 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID---LGQNLLQGNLKEFLLLYPDI 122 H+ E+ +LE+ ++ P+G +++ + L NLLQ +FL YP I Sbjct: 64 YHQQLMEIIPRLESLNECVKNQRNMPTGTVKLGLVGEADVLTHNLLQ----DFLKNYPLI 119 Query: 123 QIQLILDNKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+ + N ++Y D I + I+ +S I R L+ + YA+P Y+ P Sbjct: 120 TIETHVSNLGYHDILNYGLDACIHI-GSIKDNSFIARPLMRVSRKLYASPDYIATYGMPT 178 Query: 182 SIQELDKHNLITF----GDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 S+++L++H L+ + G+L ED FN +GE R+ +++ +++ Sbjct: 179 SLEDLNQHALMIYRKQNGEL-----EDSWKFN--------LGEYRVKSRVISNSSHYVRH 225 Query: 235 CVL-GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY-----FCYP 274 +L G+GI+LL + V ++ L ++E + P + VY YP Sbjct: 226 AILNGAGISLLAELSVVEHLRLGNLVE--VLPEYEVYVDDAWLVYP 269 >gi|319793104|ref|YP_004154744.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595567|gb|ADU36633.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 311 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF V +GSFT AA +L +S S+ ++ LE +G +L +R +R L+LTE G+ + Sbjct: 7 LRVFREVVEAGSFTAAAGRLAMSPPMASKHVAQLEKSLGARLLHRSSRHLSLTEAGTAWY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + ++S P G+L+++ + L ++ +P++ + + Sbjct: 67 EQSRRALDLLDAAEAAIGQTSEAPRGQLKVSAPVWCATPRFARVLADYRERFPEVLVDMH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ +D++ D D A+R + S +LI R L + H P YLK ++ Sbjct: 127 LENRKVDLAADGYDLALRATQE-PSPALIARPLCRVPFHLAGTPDYLKRMGGCPALPA-- 183 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--P-RISCLQVNSYLSIMQYCV-LGSGIAL 243 +L G ++P + N + P G P R++ + ++ + V G GIA Sbjct: 184 --DLSRLGAIVPSYVNLDNL--ALKGPGGRMLPLRLTPAMRSDDTTLTLHAVHAGMGIAF 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +++ D+ LVR++ D T++ Y KL+ F +F+ Sbjct: 240 MPLWLIDDDLAEGRLVRLLPDYEAQPVTLFAVYTSRQYMAPKLRTFIDFL 289 >gi|300717373|ref|YP_003742176.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299063209|emb|CAX60329.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 303 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 93/183 (50%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A+ G FT AAE+L L++S++ + + LE +G+KLF R R L+LT G + Sbjct: 12 AFVTTAQQGGFTAAAERLGLTKSAVGKSVGRLEARLGLKLFLRSTRRLSLTPDGERFLIS 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + EL +PSG+LR+ G+ + L + YP++ + + Sbjct: 72 CQNAMDILEQAEAELTSHICQPSGRLRVDLPAAFGRQRILPILLQITRRYPELALTVTFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D IR+ + SS L+ R+L T + A+P YL EP+S +EL +H Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLYGGEPVSSEELSQH 191 Query: 190 NLI 192 + Sbjct: 192 QCV 194 >gi|123443245|ref|YP_001007219.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090206|emb|CAL13070.1| LysR family transcription regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 303 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A+ GSFT AAE+L L++S++ + +S LE +G+KLF R R L+LT G K Sbjct: 12 AFVTTAQHGSFTAAAERLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGEKFLAS 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + EL P+G+LR+ G+ + L + YP++ + + Sbjct: 72 CQSAIDILELAEAELTAHITHPAGRLRVDLPAAFGRQRVLPILLDITRQYPELTLTVTFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D IR+ + SS L+ R+L T + A+P YL + EP+ +EL +H Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPEYLLHNAEPVQPEELSQH 191 Query: 190 NLI 192 + Sbjct: 192 KCV 194 >gi|325292046|ref|YP_004277910.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gi|325059899|gb|ADY63590.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 299 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 27/295 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA SGS + AA++L S + IS++I LE ++G +LF R R ++LTE G + Sbjct: 7 LEVFATVAASGSMSLAAKELGYSPAVISKRIKRLEEKLGARLFQRTTRQISLTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V LE + + + +G L+I+ G+ + +LK F+ +PD+ + L+ Sbjct: 67 ERVLAVLEGLEDAEDFVSGRANTVNGTLKISAPTSFGRMHIAPHLKTFMERHPDLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI D AIR+ + SSSL+ R+L + A+ Y+ P +I++L Sbjct: 127 LSDEFIDIIEGGYDLAIRIAD-LNSSSLVARRLAPVRRVLCASAEYVTAHGMPATIEDLK 185 Query: 188 KHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 KH +C+ N W ++ P G I L NS I + + G GI Sbjct: 186 KH----------RCLPAHNNDIW--RLEGPGGALSIRPEGMLVTNSSEVIREAVISGLGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 AL + + R+++ + PS+ T+ YP K++ F +++ Sbjct: 234 ALRSTWDIGHELRAGRLVQ--VLPSYEGSRNVTLSAVYPSRQFLPAKVRLFIDYL 286 >gi|188534836|ref|YP_001908633.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188029878|emb|CAO97762.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 304 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 32/298 (10%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----- 64 VF + + GS T AAE L +S++ ++R ++ +E G +L +R R L+LT G Sbjct: 9 VFITIVQRGSLTAAAETLDMSRAMVTRYLTQMENWSGARLLHRSTRRLSLTPAGEHALTR 68 Query: 65 --KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 ++ + +E+ H + L SG LR++ ++ LGQ+L+ + F +PD+ Sbjct: 69 CQQMMALAAEIEHSNQPEGEAL-------SGLLRVSCSLSLGQSLVMPAIHAFQQRHPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L + N+ +++ + D A+R+ ++ +LI R L T AAP YL + PL+ Sbjct: 122 RIDLHISNQRVNLIEERIDLALRITSQLE-PNLIARPLNTCRSVICAAPPYLAHAGTPLT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVL 237 Q+L +HN +T+ K + F GE + + L N + ++ Sbjct: 181 PQQLTQHNCLTYSHF-GKSLWHFTR--------GEEKETVAVSGNLSANDSVMLLAATQT 231 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 GSGI++ P Y N L+ ++ + +Y Y + +L+A +F+ + Sbjct: 232 GSGISMQPTYSAGPLLANGQLIALLPEYQPEDLGIYAIYTSRQHQSPRLRALLDFLVI 289 >gi|152971928|ref|YP_001337037.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956777|gb|ABR78807.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 303 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 24/294 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V GSFT AA +L LS + + I+ LE+++ +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ + P+G LR++ G +++ FL +P + Sbjct: 62 GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIR+ + I L+ R L M AAP YL P + Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L H C+ W A V+ + R + L+ N ++ Q Sbjct: 181 PEDLTDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAVLRCNDGYALRQAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G+G+ + P+ ++ D + +LVR++E V+ + + + KL F Sbjct: 231 IAGAGLLMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284 >gi|157369623|ref|YP_001477612.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157321387|gb|ABV40484.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 297 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 1/173 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G FT AA+ L + ++++++ I LE + KLF R R +++T +G + Sbjct: 8 IRVFNRVVETGGFTRAADSLRMPKATVTKLIQSLEDHLQTKLFQRTTRSVSVTAEGECYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + T + +LE + + ES P G LRI + LL L +F+ YP IQI L Sbjct: 68 QRTVKWLAELEQMEGSMTESQSAPQGVLRIDVGGSTARQLLLPALPDFIARYPQIQIDLG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++ ID+ D ADC IR P+ SSLI R+L + A P YL P Sbjct: 128 VGDRLIDLINDSADCVIR-SGPLADSSLIARRLFELEWVTCATPAYLARHGTP 179 >gi|116695357|ref|YP_840933.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113529856|emb|CAJ96203.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 303 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 13/290 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V G FT A L L +S++S ++ LE +G++L R +R LT+ GS+ ++ Sbjct: 10 FVQVVDRGGFTSAGNSLGLPKSTLSHRVKELEASLGVRLINRTSRQFALTDVGSEFYQYA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + + +++ +PSG +R+ ++L Q L+ L FL +P + I I + Sbjct: 70 VALLQSADVAEQAMRQRLAEPSGIIRVTVAVELAQFALRQVLPTFLSSHPKVSIVEIATD 129 Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL--SIQELD 187 + +D+ + D A+R +Q S+L+QR +V + +A YL+ R PL + ++L Sbjct: 130 RLVDVVGEGFDLALRGHTSALQDSNLVQRPIVRAPWYLFAGADYLE--RMPLLDAPEQLA 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H +++ ++ K + DR + P Q NS +S+ + G+A LP Y Sbjct: 188 SHAIVS---MVRKGPLQWQLRGPDDRLVTIPVEPRFQSNSMMSLKEAACANVGVAALPGY 244 Query: 248 IVKDNPNLVRIMEDVITPSFTVYFCYPEALK--NTGKLKAFRNFI-FLKA 294 I + P L + + P + AL TG L A R+ + FL A Sbjct: 245 ICR--PELQAGVLRQVLPGWIAADARISALMPYRTGLLPAVRSLVDFLAA 292 >gi|154245537|ref|YP_001416495.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159622|gb|ABS66838.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 313 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 1/195 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D ++L+ F + GS + AA +L ++ + +S++++ LE G++L R R L+ T Sbjct: 1 MLDDLNELKTFRAILAEGSLSAAARRLGITLAVVSKRLATLEDRAGVRLIQRTTRALSPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++L +E + +L V+PSG LR++ I G+ + L + + Sbjct: 61 EEGARLLIDVERALDAIEAGEEQLASGRVEPSGTLRVSAPIAFGRRCVAPVLAQLAARHA 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L LD++ +D+ + D AIR+ P SS+++ RKL AAP YL P Sbjct: 121 RLGVALELDDRVVDLVGEGFDVAIRIGAPADSSAMM-RKLADNRRILVAAPAYLDRAGRP 179 Query: 181 LSIQELDKHNLITFG 195 ++ +E H + +G Sbjct: 180 VTPEEAAGHAFLRYG 194 >gi|221199417|ref|ZP_03572461.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221205680|ref|ZP_03578695.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|254255331|ref|ZP_04948647.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124901068|gb|EAY71818.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|221174518|gb|EEE06950.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221180702|gb|EEE13105.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 314 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 16/291 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V GSFT A L + ++SR +S LE + +L +R R LT+T+ G Sbjct: 4 FQNMSVFAKVVEMGSFTAVANHLDSTVGNVSRAVSALEEALNTRLLHRTTRRLTVTDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + LE + E +E+ +P G LR+ LG++L+ + + +P + + Sbjct: 64 RFYERCAAILADLEHAEAEARETLFEPRGTLRVHCVPGLGRHLVTRAVLAYRKQFPQVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+L + ++ D D +I + + + S+ + +K+ + H A+P YL+ P + Sbjct: 124 DLLLQQRMPNLLEDQLDVSIVISRTLPDSAYVSQKIGSSHCVLAASPAYLEQHPAPADAE 183 Query: 185 ELDKHN--LITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLG 238 L +H L+T D P ++++ + D RPIG P L VN S+ G Sbjct: 184 ALAEHACILLTTVDYAP---DEWHLTSAADSVTFRPIG-PH---LCVNDMESMAVALRDG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +GI L+ + D + LVR++ + T S VY + K+K F Sbjct: 237 AGIGLIAGFSAIDDLRDGTLVRVLPEYHTHSRNVYAVHSSRQFVDAKVKRF 287 >gi|260466799|ref|ZP_05812984.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259029411|gb|EEW30702.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 300 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 136/296 (45%), Gaps = 15/296 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V +GSF+ AA L ++ S++S+ I+ LE +G +L R R L LT +GS Sbjct: 11 EIEVFVRVVEAGSFSAAARNLRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGSAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + E + G+LR+ T + G + L L FL YP+I + L Sbjct: 71 YESGLRILADMAAAEREAAAGAAP-RGRLRVNTYVPFGVHRLIPLLPRFLERYPEISVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L + ID+ + AD AIR + + S L+ RKL M AAP YL P EL Sbjct: 130 VLTDSVIDLMAERADVAIRAGQ-LGESRLVARKLGQSPMVVVAAPSYLGAHGTPRLPAEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 D+HN + FG W P V+ ++ + G+GIA L Sbjct: 189 DRHNRLAFG----FARYSDGWPFADGTSFTVPVSGNAMVSDGEAMRLMTIAGAGIARLAR 244 Query: 247 YIVKDNPNLVRIM---EDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V+ + R+M ED + P+ VY + + L +++AF +F+ R Sbjct: 245 WHVEPDIATGRLMPLLEDFNPGDVEPTHAVYVGHGKHLP--ARVRAFLDFLVETVR 298 >gi|213969931|ref|ZP_03398064.1| transcription regulator preotein [Pseudomonas syringae pv. tomato T1] gi|213925256|gb|EEB58818.1| transcription regulator preotein [Pseudomonas syringae pv. tomato T1] Length = 305 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 134/287 (46%), Gaps = 13/287 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF +A GSFT AE + + + ++R I LE + ++LF R R + LT +G + Sbjct: 6 SMQVFAKLAELGSFTRVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRF 65 Query: 67 H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + RV S + ETT + + S G+LRI + Q L+ F +PDI + Sbjct: 66 YERVKSNLADLAETTSMFDRNGSTL-RGRLRIDIPVAFSQRSFMETLRGFTRAFPDIDVV 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + DCA+R+ + + SSL+ R + M AAP YL+ P ++++ Sbjct: 125 LGVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H ++F L + W L D P P + VN + +Q + G GI Sbjct: 184 LKRHCGVSF--LSGQNNRPLPWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGIL 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P V+ + LV ++E V YP +++AF Sbjct: 240 QAPGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAF 286 >gi|213609501|ref|ZP_03369327.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 287 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 4/247 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMLMVVCAAKPYLAQYGVPEKPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLM 236 Query: 248 IVKDNPN 254 V D N Sbjct: 237 WVIDEIN 243 >gi|88798596|ref|ZP_01114180.1| putative transcriptional regulatory protein (LysR family) [Reinekea sp. MED297] gi|88778696|gb|EAR09887.1| putative transcriptional regulatory protein (LysR family) [Reinekea sp. MED297] Length = 299 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 137/295 (46%), Gaps = 18/295 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA + SF+ +AE+ + SS+SR+I+ LE +G L R R ++LTE G + Sbjct: 7 LRYFASVADTSSFSRSAERFRVPPSSLSRRIADLEAHLGATLLNRTTRSVSLTEVGRQYA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L ++ S +P G LRI++ + G++ L+ LK+F YP I + + Sbjct: 67 KQIQPLLQNLAEADDAVRSYSKEPMGTLRISSMVSFGEHKLRPVLKDFSARYPKIVLDVH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + + D+ D AIR + + ++ ++L+ AAP YL+ P + EL Sbjct: 127 LTDTVTTLDKDHIDLAIRGGY-VPNERIVAKRLMGNDFVPLAAPSYLQRHGTPTTALELR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H + F WLA +D + + P + + N + + V G GI + Sbjct: 186 QHRGLYFR----TPAGPTPWLAKIDEQWQNVSGP--AVMTTNDGPWLREQAVNGGGIIFM 239 Query: 245 PDYIVKDN---PNLVRIMEDV---ITPS--FTVYFCYPEALKNTGKLKAFRNFIF 291 P ++ ++ L+ + D ITP F VY Y + K+K +++ Sbjct: 240 PKWVCEEEIERGQLIELTLDAPTRITPDNQFAVYLLYQTHRYSIPKIKVAVDYLL 294 >gi|209809726|ref|YP_002265265.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio salmonicida LFI1238] gi|208011289|emb|CAQ81733.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio salmonicida LFI1238] Length = 295 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 26/266 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +R F V R + A+E+L++ Q++I R+I E + LF + G TLT++ Sbjct: 1 MNWDDIRFFLAVYRCNTLGKASEELNVDQTTIGRRIKAFEKVINQNLFVKSPLGYTLTKE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G KL + + + IE + + P G +R+ TT L + + + YP I Sbjct: 61 GDKL--LNDALAMESAAHSIERRMHTSDPEGIVRLTTTDGLALDFINKAVAAIQQSYPKI 118 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L + +D++++ D AIR +P S ++ ++L ++ +A+ HY+ P Sbjct: 119 CIELSISTSTLDVNLNETDIAIRTIRP-NSPNVKTKRLAQWNVGLFASKHYISTHGYPND 177 Query: 183 IQELDKHNLITFG---------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 HN++ + L+ KC + + A QVNS + Sbjct: 178 NDNFKNHNVVIYQPGVTHKQNETLVGKCRNNAHITA--------------QVNSSAILKD 223 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIM 259 G+GI LP Y K++ NLVR+ Sbjct: 224 LIEQGAGIGELPIYYQKESSNLVRLF 249 >gi|83719170|ref|YP_440864.1| LysR family regulatory protein [Burkholderia thailandensis E264] gi|167617658|ref|ZP_02386289.1| LysR family regulatory protein [Burkholderia thailandensis Bt4] gi|257140481|ref|ZP_05588743.1| LysR family regulatory protein [Burkholderia thailandensis E264] gi|83652995|gb|ABC37058.1| LysR family regulatory protein [Burkholderia thailandensis E264] Length = 320 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + + Y D+ +++ Sbjct: 66 YERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL P +I + Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPTTIAD 185 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241 L H+ I L+ + D + V P + VN +L ++ VL G+GI Sbjct: 186 LQHHSFIRREPNETLLDAAISDVAAASRV------PLSGNVIVN-HLEGLRVAVLDGAGI 238 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ALL +V ++ LV ++ D + P +Y Y + K+++F +F+ Sbjct: 239 ALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 291 >gi|197121008|ref|YP_002132959.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196170857|gb|ACG71830.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K] Length = 297 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 128/283 (45%), Gaps = 18/283 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + D LR+F VA SFT AAE L LS++ +S + LE E+G +L R R + LT Sbjct: 1 MNLDALRMFVKVAELASFTRAAEHLGLSKARVSAAVRDLELELGSQLLQRSTRAVRLTTS 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLY 119 G L +L T EL PS G++R+ L ++L L L + Sbjct: 61 GEAL----LARARQLVTEADELAGMFRAPSALGGRVRVDMPQSLARSLFIPRLPALLDAH 116 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P++++QL ++ +D+ + DC +R+ K + +S L+ R+L + + A+P YL+ Sbjct: 117 PNLEVQLSTTDRRVDVIREGFDCVLRIGK-LDASGLVARRLGEMPLMNCASPGYLRRHGT 175 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P S+++LD+H ++ + F + R P + + VNS S C+ G Sbjct: 176 PRSLEDLDRHLVVHYASRFGVGAPGFEYQDGA-RYRERPMRALVTVNSSDSYQAACLAGL 234 Query: 240 GI------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEA 276 GI +LP D LV ++ V +P Sbjct: 235 GIIQAPRAGVLPGIAAGD---LVEVLPQHAAEPLPVSLVHPHG 274 >gi|83945620|ref|ZP_00957966.1| transcriptional regulatory protein [Oceanicaulis alexandrii HTCC2633] gi|83850986|gb|EAP88845.1| transcriptional regulatory protein [Oceanicaulis alexandrii HTCC2633] Length = 303 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 129/297 (43%), Gaps = 27/297 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F VA + SFT AA +L SQS++S+ + LE +G++L R R + TE G Sbjct: 5 DLSDLMTFLAVAEARSFTKAAVRLGTSQSAVSQVVRRLEDRLGVRLLTRTTRNVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L ++E L + PSG LRI T D +LL+ + + + +PDI Sbjct: 65 RRLAERLRPALDEIEAELETLDQIRSTPSGLLRITATYDSAHDLLEPVVSQLMQDFPDIA 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D + +DI+ D D +RL + + + + + M AP Y P + Sbjct: 125 VEISVDARLVDIAKDGFDAGVRLGEQVDADMIAVPIGPDLSMRVAGAPAYFDRAGRPQTP 184 Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-----MQ 233 EL H+ I T G L + W D G P +S Y S ++ Sbjct: 185 HELTDHDCINLRLQTLGGL-------YAWEFEKD---GRP-LSVRVEGRYTSDDPALNIK 233 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + G G+ LPD ++ + L ++ED P + YP + T AFR Sbjct: 234 MALKGGGLVCLPDQLLTGHLKTGALETVLEDWCPPFPGYHLYYPSRRQMT---PAFR 287 >gi|83747096|ref|ZP_00944140.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|83726226|gb|EAP73360.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 326 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 38/287 (13%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V G+F AA +L L+ SSIS+ + LE E+G+ L +R R L+LTE G Sbjct: 34 RMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTEAGRVY 93 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V H Q ++ +P+G+LRI +L L L++F+ +P + ++ Sbjct: 94 YEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAVRF 153 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ D A+R+ + ++ SSL+ R++ AAP YL+ P + Sbjct: 154 ELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPAYLERTGPPTT---- 208 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----------LQVNSYLSIMQYCV 236 P+ + D +WL + P+GEP L+V+ L+ Q Sbjct: 209 ------------PQALADLDWL--IFTPLGEPAFVHLRNTQGHEVRLRVHGRLATNQAQT 254 Query: 237 L------GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274 L G G+A LL I + LV ++ D F VY P Sbjct: 255 LKALALDGHGVARLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITP 301 >gi|90422306|ref|YP_530676.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104320|gb|ABD86357.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 301 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 7/250 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F V SF A++L LS++++S+ ++ LE ++G +LF R +R L LT+ G Sbjct: 6 DFEGLAIFAKVVELRSFAATADELVLSKATVSKAVTRLEQKLGARLFNRTSRRLALTDAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + E + E S P G +R+A + G ++ L EF+ YP++ Sbjct: 66 HRLAERATRLLADGEAAENEALAQSGAPRGLVRLAVPMTFGVKVIAPLLPEFMQNYPEVA 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +D+ D D IR+ + SSL+ R+L + AAP YL P Sbjct: 126 IDLHLSDATVDLIGDGFDAGIRIAT-LPDSSLLARRLCAMPRFTVAAPSYLATYGRPTHP 184 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H + + L P N D + P L+VN+ +++ + G GI Sbjct: 185 MHLAAHRCLGYAYLSTPNTWHYTNAAGEQADVRLSGP----LRVNNGEALLPALLAGLGI 240 Query: 242 ALLPDYIVKD 251 A LP++IV D Sbjct: 241 ADLPEFIVGD 250 >gi|330971067|gb|EGH71133.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 297 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 128/285 (44%), Gaps = 6/285 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L ++ S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLQVARDQSFTKAATELGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQ++ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H I + W R + NS + ++ + G G+A + Sbjct: 187 LTQHTCINIRHSPNGSC--YAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAYV 244 Query: 245 PDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 PD + + + R+ E ++ +P F + YP + + AF Sbjct: 245 PDSMAEPHIASGRLREVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289 >gi|312884729|ref|ZP_07744430.1| putative transcriptional regulator protein, LysR family [Vibrio caribbenthicus ATCC BAA-2122] gi|309367642|gb|EFP95193.1| putative transcriptional regulator protein, LysR family [Vibrio caribbenthicus ATCC BAA-2122] Length = 292 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V ++GSF AA L +S+ ++S QI LE + +++ R R L +T +G K+ Sbjct: 9 MAVFAAVVKTGSFNKAAALLQISRPAVSEQIRKLEDLLKVRVLQRSTRRLNVTPEGEKVL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V L T+ L + ++ GK+R+ T D+ N L + F YP I+ + Sbjct: 69 PLAQSVLESLMMTEKVLLQDQLR--GKIRLTATYDIAHNWLLPRITTFRQQYPHIEFDFL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + D AIR+ + + RKL + YA+P+YL C +P++ + L Sbjct: 127 ISDEKVDLIKNQIDLAIRV-SSMDELGFVARKLFEDKLEVYASPNYLNRCAKPVTTESLL 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + L + + P C NS + + G+ LL D Sbjct: 186 EHKWVVINQLTNGG--EITLYNDSQKVRFSPEDYC-STNSPILSRDMILADMGLGLLIDN 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I K + LV+++ F+ Y YP + + NF+ Sbjct: 243 IAKPHIRSQQLVKVLPGWQAQHFSCYLLYPSKSYLPRRTQVLINFLL 289 >gi|23499863|ref|NP_699303.1| LysR family transcriptional regulator [Brucella suis 1330] gi|23463435|gb|AAN33308.1| transcriptional regulator, LysR family [Brucella suis 1330] Length = 297 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G +L R R +LTE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +++ Q + E+S G+++++ ++ +L +F L +P+I + + Sbjct: 66 YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFTDAVIGQSLIDFCLAHPEIVLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ + +Q SSLI ++L H AP + +P ++L Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + ++++ + P +++NS ++ + G G +LP Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I +D L+ +++ I +Y YP K++A +F+ Sbjct: 243 FIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289 >gi|119387016|ref|YP_918071.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377611|gb|ABL72375.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 303 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 124/271 (45%), Gaps = 7/271 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V +GSFT A E+L +S +S+ ++ LE + G+ L R R L+LT G + Sbjct: 5 DGIRAFVAVVDAGSFTRAGERLGISNKLVSKYVAALEGQQGVTLLNRTTRALSLTPAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V +E + +G+LRI + G+ ++F ++P I I Sbjct: 65 YLTAARRVLAAVEELDAQAHAEEGALTGRLRITAPVAFGEMFATTLTRDFARVHPGIDID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A+R+ + + SSLI R++ A+P YL P ++ Sbjct: 125 LNLSDRYVDLAAEGFDLALRIGQ-LPDSSLIARRIGQTETWVVASPAYLAAHPRPNRPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + D + +L + + P + VNS ++ + + G G+AL+P Sbjct: 184 LRDH--VNIRDSNAQNPGRAVFLIE-GKAVSVPLPGRITVNSAQAVRRLVLEGEGVALIP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 ++V + L R++ + P + Y Sbjct: 241 SFVVARDVAEGRLERLLPGFVRPQLDIQALY 271 >gi|126739601|ref|ZP_01755293.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] gi|126719247|gb|EBA15957.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] Length = 313 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 11/252 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE +G++LF R R LT TEQG Sbjct: 5 DNIRTFVRVYELGSMSAAGRDLRISPAVTSARISQLEDYLGVRLFQRTTRNLTATEQGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V ++ + ++ + P G L +A + G+ L+ + FL YP+I ++ Sbjct: 65 FYTGAVSVLDAVDQAEAQVMHLTDTPRGTLFVAAPLGAGRRLVAPEVPTFLKEYPEINMR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D++ + D A L +P + S+L RK+ AAP YL +P S ++ Sbjct: 125 LRMSDRSVDLTTEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPEYLARRGKPESGED 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 L DKHN + P E F W+ + G R + + + + + + G G Sbjct: 184 LVKDKHNCLNL--RFPGASE-FQWMLQTEE--GPQRFAISGRYECDDGDVLTDWALSGEG 238 Query: 241 IALLPDYIVKDN 252 +AL P + V ++ Sbjct: 239 VALKPVFEVAEH 250 >gi|113866914|ref|YP_725403.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113525690|emb|CAJ92035.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 302 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 17/296 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M FD + VF A G+ + AA L LS SS S ++ LE +G +L +R R L LT Sbjct: 1 MHFDLLDIAVFVRAAALGNLSAAARDLGLSTSSASARLGRLEQSLGSRLLHRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ + S+ +P G+LR+ G+ + L EFL YP Sbjct: 61 ADGERFLPHAEQLLATAALASASVGTSAERPRGQLRVTAPASFGRQHVSPALPEFLAAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI + L L ++ I + D A+R+ + S+L+ R L H A+P YL+ P Sbjct: 121 DIALDLRLTDQVIGLVDASIDVALRMGV-LPDSTLVARALAPSHRVICASPAYLQRHGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 +L +HN + D + FN P+GE + L+V++ + V Sbjct: 180 RHPDDLRQHNCLVLAD---QSAWRFN------TPLGETVVHVRGNLRVDNGEVLRDAVVA 230 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 G GI+L + V + LV ++++ + P+ +++ +P K +AF +F Sbjct: 231 GVGISLKSTWDVGPLLRSGALVTVLDEYPVVPAVSIWAVFPSRHLVPPKTRAFVDF 286 >gi|170751628|ref|YP_001757888.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658150|gb|ACB27205.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 315 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 26/298 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F V G+ T AA ++ S+SR+IS LE +G L RH R ++ T +G Sbjct: 13 DDLRAFCAVVDLGTVTAAAASRGETKGSLSRRISRLEAALGAILIARHPRAVSPTAEGLA 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E L+ +++ P+G LR+ T++D G L+ G + F YP I + Sbjct: 73 FYAKVQESLALLDEAAETARDARTVPAGHLRVTTSVDFGIELMPGIVASFRRAYPQITVD 132 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I + +D++ + D A+RL ++ ++LI R V + YAAP YL P S Sbjct: 133 MINTDARLDLAANRIDLALRLGDVEETGYRAALILRLWVGL----YAAPDYLARRPAPTS 188 Query: 183 IQELDKHNLI-------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 + L +H+LI G ++ +A ++ + + ++++ Sbjct: 189 LAALPEHDLILSRERPGALGIMLSDGQGRTEQVALS---------PAVRASDFAAVLRLT 239 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+GI LP + N LVR++ T + + +++ FR + Sbjct: 240 LAGTGIGHLPSAVAAGSVANGALVRVLAPWATAGGALRAVSLAGRELPARVRVFREHV 297 >gi|113868195|ref|YP_726684.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113526971|emb|CAJ93316.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 317 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R ++LT +GS Sbjct: 6 QLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKISLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + F+ +PD+ I L Sbjct: 66 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L A+P YL P++ ++L Sbjct: 126 DLSDRVVDLVNEGFDCAIRLGD-LPDSSLVSIRLAETRRVVVASPEYLARAGRPMAPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +HN + FG W+ + R + ++ + + ++C+ G+G+A Sbjct: 185 QRHNCLAFG---ASANVQRGWVFQEEGRAVTVKVGGTMECSDGAVLHEWCLQGNGLAWRS 241 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 + V + LV ++++ P ++ +P+ Sbjct: 242 WWEVGSEIASGRLVTVLDEFQAPPIGIHAVFPQ 274 >gi|119946301|ref|YP_943981.1| transcriptional regulator, substrate-binding of LysR family protein [Psychromonas ingrahamii 37] gi|119864905|gb|ABM04382.1| transcriptional regulator, substrate-binding of LysR family protein [Psychromonas ingrahamii 37] Length = 293 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 26/298 (8%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V ++GSFT AAEQ S+S +S+Q+S LE +GI L +R R + LT+ G + Sbjct: 8 AFLAVVKTGSFTRAAEQTKTSKSRVSQQVSSLEKTLGITLLHRSTRKIRLTDAGDAYYSE 67 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQIQLIL 128 S LE + L E + +G +R+ + L + +L + F+ YP ++IQL Sbjct: 68 CSRAAAILEQARKNLNERQDQVAGLIRLNSVGGLFSEKMLAPAVIAFMKQYPQVEIQLDF 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + +D+ + D +R+ + + +SSLI RKL+ I A+P ++K +P Q+L + Sbjct: 128 SSAQVDVIAESVDLVVRMGQ-LNNSSLIARKLMEIKTDVVASPAFIKKQGKPNHPQQLSQ 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGIA 242 N + C W + G + + V LS +L G GI Sbjct: 187 FNCL--------CGSIRKWHF---QHKGLEKAQDVTVTGSLSSANGHILSMAAIEGLGIV 235 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 L + L+ + E P+ V YP+ T +++ F +F+ DW Sbjct: 236 RLNELYTHQYLQTGQLIPVFEQWHIPAVPVSLIYPKVRYKTKRIQVFVDFLI----DW 289 >gi|73537962|ref|YP_298329.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gi|72121299|gb|AAZ63485.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] Length = 304 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 6/272 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++ +F A GS + AAE L +S ++ SR +S LE + +L R+ R L LT+ G Sbjct: 4 WTEIELFVQTAEFGSISRAAESLEMSNAAASRYLSSLERRLSARLIERNTRRLYLTQVGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + R E+ +++ + ++ + ++PSG L I ++ L + EF YP + + Sbjct: 64 QYFRRCKELLAEMKEAEADVSAAVLEPSGTLTITASLSFAMKHLAPLVPEFTTRYPKVNV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ N+ DI D AIR R+ S+L R+L A P YL P S++ Sbjct: 124 NVLAANRYYDIMDSGTDLAIRTREFEPDSNLTVRRLAQTRRVLAATPRYLDTHGIPRSVE 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+++ + + ++ ++ + R S ++ N + + G GI + Sbjct: 184 ALADHSMLIYS--YANRPNELSFTRGDEKQVVTVR-SKMESNDGQVLRAAALEGMGILVQ 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 P YI+ D+ L+ +++D P T+ + Sbjct: 241 PKYILYDDIVAGRLIPVLDDWDLPRLTINIAF 272 >gi|294011553|ref|YP_003545013.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292674883|dbj|BAI96401.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 297 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 16/295 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F V SFT AA+ L +S++++S+ ++ LE + LF R +R L LTE G Sbjct: 5 DFEAWAMFAAVVEHRSFTDAAKALSVSKATVSKAVTRLEQHLDTSLFSRTSRRLALTESG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + + + ++ + + SG +R+ + G + + EF P + Sbjct: 65 RRLAEHAARILSEGQAAEEAARDETAELSGTVRLGAPMTFGLLRIAPLVAEFTKQNPHVD 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + ID+ D IR+ + SSL R+L + +H A+P YL P Sbjct: 125 IDLHLSDARIDLVDMGLDATIRIAD-MPDSSLRARRLADVTLHVVASPAYLAERGRPTHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLG 238 +L H+ + + + + F+ G+ + + L VNS +++ G Sbjct: 184 SDLGDHDCLCYSNTPTPDVWRFSG-------PGQQNVVVQVRARLTVNSGEAMLPALRTG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA LPD+IV + + L I+ D P F ++ P + ++ A +F+ Sbjct: 237 VGIARLPDFIVGEAIASGELEEILVDWRPPPFGIHLVTPPSRLRPARVDAVLDFL 291 >gi|170736161|ref|YP_001777421.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818349|gb|ACA92931.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 303 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 131/294 (44%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F R SFT AA +LHL+QS+ISRQI LE +G LF R R L LT G + Sbjct: 12 LVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSG--KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++V+H L T E +KP G +L IA + + L L +F YP+I+++ Sbjct: 71 --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPDFRATYPNIKLR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI+ + +S D + + + R+L + AP YL L + Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L L+ D + M W L VDR +P+ + +NSY I+Q +LG G++L Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 243 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 Y++ D LVR+ E + Y P + F ++F +A Sbjct: 244 GWRYMIDACIDAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQA 297 >gi|53803391|ref|YP_114870.1| LysR family transcriptional regulator [Methylococcus capsulatus str. Bath] gi|53757152|gb|AAU91443.1| transcriptional regulator, LysR family [Methylococcus capsulatus str. Bath] Length = 313 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 12/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA++GSF AA++L LS++ ++ + LE +G++L R R L+LTE G Sbjct: 9 VFTKVAKAGSFAAAAKELGLSRAMATKHVMQLENSLGVRLLNRTTRHLSLTEVGMVYLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ LE T++ + +P G L++ G L + +L +YPD+ ++L+L Sbjct: 69 CLQILDDLEETELAVTRLQTEPRGTLKLNAAPFFGAYHLAPAIAAYLEIYPDVNVELVLQ 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 +D+ + D AI L + ++ SSLI RKL T AP Y + P + ++L KH Sbjct: 129 AGYVDLVEEGFDLAIHLDE-LRDSSLIARKLGTSQRIVCGAPSYFEKRGVPKTPEDLKKH 187 Query: 190 NLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 N ++ L P+ F + +TV + G L+ +S ++ + G G+ LLP Sbjct: 188 NCLSNSSLPPRDQWQFVSQDGKSTVIKVSG-----TLEASSADALRMAAISGLGLVLLPT 242 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V + L ++ D + + ++ YP + K++ F +F+ Sbjct: 243 YMVGQDIRKGRLQAVLTDYVPAAADIHAVYPHRKHLSAKVRTFVDFL 289 >gi|78060495|ref|YP_367070.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77965045|gb|ABB06426.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 307 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 16/264 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L +F V R+GSF+ AA +L + +++SR+I LE ++G +L +R R L + + Sbjct: 2 LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQLEGQLGTRLLHRSTRKLAPSTE 61 Query: 63 GSKLHRVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L + ++ +IE L +PSG +R+ L + L EF YP Sbjct: 62 GQALFERYAPALDRI--FEIERLHADGQEPSGTVRVTAMAGLFEIFRLEWLAEFYARYPQ 119 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I +LD+ D+ + D A+R+ S + R++ M A+P YL+ P Sbjct: 120 ISIDFLLDDTPSDLIGERIDLALRMGIETGGSFRV-RRIAPGTMILAASPAYLERRGAPR 178 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 + +EL H+ +T + M W + P G IS VN ++Q C+ G Sbjct: 179 TPRELADHDCLTVSGRQGRAM----W--RLQGPRGTQEISIDSRFSVNDMRVVVQACIAG 232 Query: 239 SGIALLPDYIVK---DNPNLVRIM 259 G+ALLP + + + LVR++ Sbjct: 233 LGVALLPQLLAEPGIEQGKLVRVL 256 >gi|39934791|ref|NP_947067.1| LysR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39648641|emb|CAE27162.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris CGA009] Length = 305 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 14/300 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA F AA +L LS S+++R ++ LE +G +L R R + LT+ G++ Sbjct: 5 DTMTAFVAVADLQGFAPAARKLGLSPSAVTRMVAALEERLGTRLLQRTTRSVALTDTGAR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E V PSG+L ++ + G+ + L ++L YP++ + Sbjct: 65 YLERMRRILADIEEADTSAAAERVTPSGRLVVSAPVGFGRRHVAPLLSDYLRRYPEVTGE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + I++ D DCA+R+ + SSL+ R+L + A+P YL P E Sbjct: 125 LRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPAYLAARGVPAMPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 + H++I FG + W VD + RI+C L N + G G+ Sbjct: 184 IATHDVIHFG----QTGAPVGWHFVVDGR--DVRIACTPRLVSNVADVAILDAERGGGLT 237 Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + Y D R ++ + P + YP + + K++AF + + + DW+F Sbjct: 238 RVLAYQAADAIAAGRLQIVLANYEVPPLPIAIVYPTSRLLSAKVRAFID-LAAETSDWRF 296 >gi|330811566|ref|YP_004356028.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379674|gb|AEA71024.1| Putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 322 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA QL + ++ISR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVAEAGSFTAAAAQLDTTTANISRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ T +GQ+ + + + +PD+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N+ DI + D +I L + S + ++L + A+P Y+K P +L Sbjct: 126 TLANRVPDILDEGYDVSIVLASELPDSGFVSQRLGITYSIVCASPAYVKASGCPQKPGDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 H + L+ + W+ D P G+ + S VNS ++ G G+ Sbjct: 186 LNHACL---RLVSPVIPLEKWV--FDGPEGQEMVTINSSPFLVNSADAMKTAITSGMGVG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y + N LVR+M + + +Y YP K+K + ++ Sbjct: 241 VLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291 >gi|319763439|ref|YP_004127376.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|330824314|ref|YP_004387617.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118000|gb|ADV00489.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] gi|329309686|gb|AEB84101.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 318 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 144/311 (46%), Gaps = 36/311 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V R F AA++L S + +S++I LE E+G+ L +R R + +T+QG + Sbjct: 25 DDLRVFCTVVRKAGFAAAAQELAASPAYVSKRIRLLEQELGVPLLHRTTRRVAVTDQGER 84 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ E+ + +P G LR++++ G+N++ L + +P +Q++ Sbjct: 85 VFHWAQRILDDMDQLLQEVAVTRREPRGLLRVSSSFGFGRNVVAPMLSRLVQRHPGLQVR 144 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D++ + D +R+ I + LI R+L H AAP YL P S E Sbjct: 145 LEVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPGYLARRGTPRSPAE 203 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------------LQVNSYLSIMQ 233 L H+ + + D P G R+ L N+ ++Q Sbjct: 204 LPAHDCLVIKER--------------DHPFGVWRLRAGAVEQSVKVTGPLSANNGEMVVQ 249 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289 + V G GIAL + V + R+++ + P + ++ YP L+ + K++ F Sbjct: 250 WAVDGCGIALRSLWDVGAHLEAGRLVQ--VLPEWRQEANIWAVYPTPLERSAKVRVCVEF 307 Query: 290 I---FLKARDW 297 + F + R W Sbjct: 308 LQEYFGRQRPW 318 >gi|222083038|ref|YP_002542403.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727717|gb|ACM30806.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 296 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 15/293 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + LRVF VA +G T AA +L S+S +SR ++ +E +G +L R RG LTE Sbjct: 1 MDIEDLRVFVEVADAGGITSAARRLGASKSMVSRALTRIEGALGAQLLARTTRGAGLTEA 60 Query: 63 GSKLHRVTSEVYHKLETT-QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + V +++T + L + ++ G+LRIA + G L + +P Sbjct: 61 GALFRDHAARVCAEIDTAREAILPQGDLR--GRLRIAVPLTSGPVHFAPVLAKMARHHPQ 118 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QIQ ++ D+ +D DCAIR+ ++ S+LI +++ I+ A+P Y++ P Sbjct: 119 LQIQADYSDRFADLIVDGFDCAIRV-GALRDSNLIAKRVGQIYGKLVASPDYIRLHGSPQ 177 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +++ H + + + M D + TV +P G + ++ +++ G GI Sbjct: 178 TPEDIASHQALVGAESW-RFM-DGEKIVTV-QPQGR-----FRTDNGMALASAAAEGLGI 229 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 A LPD + +D + LV IM P VY P + + K++ F+ Sbjct: 230 AWLPDCVTRDYLASGALVPIMTRFPLPIGGVYVVRPPSPHPSRKVRILSEFLI 282 >gi|292491839|ref|YP_003527278.1| LysR family transcriptional regulator [Nitrosococcus halophilus Nc4] gi|291580434|gb|ADE14891.1| LysR substrate-binding protein [Nitrosococcus halophilus Nc4] Length = 315 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 38/305 (12%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F V G+ + AA L ++ SISR+IS LE +G L R R ++ TE+G Sbjct: 13 EDIRAFCAVIEFGTVSGAARTLGETKGSISRRISRLERRLGTALLARTPRAVSATEEGLA 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E L ++S P G LR+ IDLG ++L + +F LYP I ++ Sbjct: 73 FYAKAREALSLLADAAEGARQSRSVPQGHLRVTAPIDLGVDVLPSLVVKFRALYPQITVE 132 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKNCREPLSI 183 L+L + +D++ D A+R P + + R ++ H+ YA+P YL Sbjct: 133 LLLTDVALDLAAHRIDLALRA-IPGELPDMGYRASTVIGFHIGLYASPAYLA-------- 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---------------SCLQVNSY 228 HNL T +P+ + +++W+A + IG ++ + + Y Sbjct: 184 ----AHNLPT----MPQALVEYDWVARQEG-IGAAKLVLTDRRGRAVEVSTRPVARASDY 234 Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 S+ + + G GI LP + + +LV ++ + +Y L+ +++ Sbjct: 235 ASVHRIILAGGGIGPLPSMVAAASLAGGSLVPVLPGWAVAAGKLYAISLSGLEAPARVRL 294 Query: 286 FRNFI 290 FR FI Sbjct: 295 FREFI 299 >gi|241765628|ref|ZP_04763582.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241364536|gb|EER59608.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 307 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/300 (24%), Positives = 142/300 (47%), Gaps = 23/300 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R + V +GSF A + LS+ ++SRQ++ LE +G +L R R L++T++G + Sbjct: 7 MRTYVAVVDAGSFVGAMDATGLSKPAVSRQVADLEAALGGRLLQRTTRRLSMTDEGRTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +E E+ S+V+ G+LRI + G L F P + + ++ Sbjct: 67 QRCKDILQAVEEANAEVAASTVQAHGRLRIGAPLTFGVIHLAPLWGRFAAENPQVTLDIV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D +R+ +P+ S+LI R+L M A+P YL P +L Sbjct: 127 LSDRVVDLVEEGYDLVVRIGRPM-DSNLISRELARSGMALCASPGYLARRGIPEHPHDLI 185 Query: 188 KHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGS 239 +H++I+ FGD W + + P G+ + S + N+ + + Sbjct: 186 RHDVISYSYSRFGD---------EW--SFEGPQGKVIVHVNSRIHANNGDTCRVAALADQ 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+ L PD++V + + L++++ D ++ YP + K++ +F+ RD Sbjct: 235 GVILQPDFLVHEDLRDGRLIKLLPDFRLHELSIQALYPTRKQLPLKVRKLIDFLVEALRD 294 >gi|171322415|ref|ZP_02911229.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171092264|gb|EDT37643.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 313 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+P Y+ P + +L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPHTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 ++H + G + P D W + P G+ I +VN ++ G GI Sbjct: 186 EQH--VCLGMVAPGFHFD-EW--ALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + ++VR+M + + +Y YP K++ + +F+ Sbjct: 241 GLPLYSAIGGLRSGSIVRVMPEYRSHLMNIYALYPSRQYLDAKIRTWVDFL 291 >gi|295699276|ref|YP_003607169.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438489|gb|ADG17658.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 336 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 24/298 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ ++ + E + +P+G LR+ + +GQ+ + + + LYPD+ ++L Sbjct: 66 LKRSQQILADVDIAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRELYPDVTVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ AD A+ + +S L+ L T A+P Y++ P +L Sbjct: 126 TLSQRMPDLFEGSADVAVIGASMLPNSDLVSFPLGTTFSILCASPAYVRAHGAPQEPGDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H + L W T+D P G + + VN S++ G GI + Sbjct: 186 AHHECLI---LHTPAFPPHEW--TLDGPNGSELMEVDGPVHVNIAESLIVAIREGMGIGM 240 Query: 244 LPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +P Y ++D LVR++ + TVY YP R FI K R W Sbjct: 241 VPLYAAISGLRDG-TLVRVLPEYTLQKTTVYALYPS-----------RKFIDAKTRTW 286 >gi|33597131|ref|NP_884774.1| LysR family regulatory protein [Bordetella parapertussis 12822] gi|33566582|emb|CAE37839.1| LysR family regulatory protein [Bordetella parapertussis] Length = 302 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 136/290 (46%), Gaps = 13/290 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D+ RVF VA GSF AA L L ++S+S + LE +VG +L +R R + LT G+ Sbjct: 4 FDQYRVFAQVAEMGSFIKAAHALELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTADGT 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++E Q + +G+L I + + LL L L +P +Q+ Sbjct: 64 QLLERIRPLLAEVEDIDQLFQACQRQAAGRLNIDVPSRIARRLLAPALPALLRRHPRLQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ + DCA+R+ + SSSL+ R L ++ + A+P YL+ P Sbjct: 124 ALGSGDRAIDLVREGVDCAVRI-GVLHSSSLVVRPLGSLALINCASPAYLREHGAPGHPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 EL + T G P+ W AT P G + S + VN+ S + C+ G Sbjct: 183 ELAAGHW-TVGYASPQTGRALPWEYAT---PRGGTSLVEAASRVVVNNAESYIACCLAGL 238 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ +P Y V+ D LV +M D S V YP + + +L F Sbjct: 239 GLIQIPRYDVQHLLDGGQLVEVMPDQRAASMPVALLYPHRRQRSRRLAVF 288 >gi|87118749|ref|ZP_01074648.1| Helix-turn-helix, Fis-type protein [Marinomonas sp. MED121] gi|86166383|gb|EAQ67649.1| Helix-turn-helix, Fis-type protein [Marinomonas sp. MED121] Length = 295 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 137/281 (48%), Gaps = 23/281 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ +F VA SFT AAE L + +++++ I LE+ +G++L R R + LT G Sbjct: 4 FKEMLIFSRVAERNSFTLAAEDLAVPRATVTNGIKRLESRLGVRLLERTTRQVRLTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + + ++ +LE E++ S +K P G LR+ L ++ + L +FL YPDI Sbjct: 64 QYYEKCIKLLGELE----EVENSFLKHSPKGVLRVNLQGTLAKHFVIPRLPDFLKRYPDI 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I + D++ ID+ + DC +R + +Q SSLI + L + + A+P YL P Sbjct: 120 KIHIAEDDRLIDLVKEGIDCVLRAGE-LQDSSLIVKPLTQLEIVTVASPEYLDQYGTPKD 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV------ 236 + L HN I + + +F++L + ++ + +NS +++ V Sbjct: 179 LNALQGHNGIAYSLDVKARPSEFDFLV-------KNKLVSVNLNSLVAVSGAEVYTASAK 231 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 G G+ +P Y ++ + LV I+ PS V YP Sbjct: 232 AGLGLIQVPKYRIRHELETGELVPILTQFSVPSMPVSALYP 272 >gi|327188651|gb|EGE55859.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 299 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 13/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G F+ AA +L++S + + + LE +G++L R R ++LTE G + Sbjct: 7 LAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +S++ +L+ S P G L++ T+ + + LL E++ LYP I + Sbjct: 67 ERSSQILAELDEADRTASALSTTPRGTLKVYTSGSIVRFLLP-VFSEYMELYPSISVDFS 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D IR P SSLI RKL +P Y+ + PL E+ Sbjct: 126 VGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPLPLKPAEIA 183 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 HN + + P +++ + RP +I V++ ++++ L G G+ L P Sbjct: 184 DHNCLQYA-YYPYG-DEWRFEDGDGRP-ESVKIGGNVVSNNAEMLRFLTLNGRGLFLAPS 240 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 ++V D+ L+RIM D FT+ YP K++ F + + F + R W Sbjct: 241 FVVFDDIAEGRLIRIMPDYRPVEFTINAVYPNRSHLPTKVRLFIDLLAERFAEHRKW 297 >gi|322614267|gb|EFY11198.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621669|gb|EFY18522.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624530|gb|EFY21363.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628861|gb|EFY25644.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633412|gb|EFY30154.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636012|gb|EFY32720.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639605|gb|EFY36291.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646904|gb|EFY43407.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652205|gb|EFY48564.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654716|gb|EFY51035.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658937|gb|EFY55190.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664496|gb|EFY60690.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668255|gb|EFY64412.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673765|gb|EFY69866.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677826|gb|EFY73889.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681344|gb|EFY77376.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683746|gb|EFY79756.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193866|gb|EFZ79069.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200335|gb|EFZ85417.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202357|gb|EFZ87401.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205591|gb|EFZ90556.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210103|gb|EFZ95006.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216405|gb|EGA01132.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221153|gb|EGA05584.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226378|gb|EGA10586.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230742|gb|EGA14860.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234907|gb|EGA18993.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238946|gb|EGA22996.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241646|gb|EGA25677.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248207|gb|EGA32143.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251209|gb|EGA35082.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256093|gb|EGA39831.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263229|gb|EGA46767.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264269|gb|EGA47775.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271095|gb|EGA54523.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 304 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 24/297 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLH-LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++ +F V SGSFT AA +++ +S I LE E+G+ L R R LTLT+ G Sbjct: 6 RMSLFIAVVDSGSFTAAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVL 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + + Q E++ S G+LRI TT + G+ ++ L +F +PD++I+ Sbjct: 66 FYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIR 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + D+ + D AIRL S ++LI R + AAP +L R P+S Sbjct: 126 HMSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236 E + +P + W TV G+ + + V+S S+M + + Sbjct: 180 SLESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFAL 234 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V ++ L+ ++ D P +Y YP+A + K++AF +F+ Sbjct: 235 AGSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 291 >gi|207725121|ref|YP_002255518.1| hypothetical protein RSMK03536 [Ralstonia solanacearum MolK2] gi|206590353|emb|CAQ37314.1| hypothetical protein RSMK03536 [Ralstonia solanacearum MolK2] Length = 308 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 32/290 (11%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W+ F V +GSFT AAE L + +S+ S +S LE +G++L R R L LTE Sbjct: 3 TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 GS + + ++ +L + +S SG LRIA ++G L + + L +P+ Sbjct: 63 AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 122 Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +QIQ+ + + D ++ Y + + + + SSL+ R++V I YAAP L R P Sbjct: 123 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAP 181 Query: 181 LSIQELDKHNLITFGDLIP-KCM---EDFNW---------LATVDRPIGEPRISCLQVNS 227 L+ T DL C+ +D NW A ++ PI +PR+ L N+ Sbjct: 182 LA----------TPADLAGWPCLSGPDDANWGFRPAGASAAAPLEVPI-QPRLQTL--NA 228 Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + + + V G G+A + + + LVR++ D VY P Sbjct: 229 EMRV-RAAVRGLGVARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMP 277 >gi|206563305|ref|YP_002234068.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198039345|emb|CAR55310.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 315 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YPD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P Q+L Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPARPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L W+ ++ P G +I +Q N+ S+ G GI + Sbjct: 186 AAHACLT---LCTPAFPTHEWV--LEGPEGVEQIHVAGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + LVR++ I VY YP R F+ K R W Sbjct: 241 LPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|170691790|ref|ZP_02882954.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170143074|gb|EDT11238.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 299 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/277 (25%), Positives = 130/277 (46%), Gaps = 10/277 (3%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 SF AA +L LS S++ + + LET +G++L R R +++TE G + + + L Sbjct: 18 SFVGAARRLGLSASAVGKSVVRLETRLGVRLLQRSTRRVSVTEDGERFYERCRRILDALT 77 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + + +++ P G+LR+ T +G L + EF+ YPD++++L +++ +D+ Sbjct: 78 DAETMMLQANAAPRGRLRV-TLPTIGYRFLLPVVPEFMQRYPDVELELDFNDRIVDVIAG 136 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D AIR + S L R+L A P Y P +L +H I F Sbjct: 137 GFDAAIR-SGDLADSQLTARRLGPFRFVLCATPAYFAQHGVPRVPADLARHACIRF--RF 193 Query: 199 PKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---P 253 P + +W D+P + L N+ ++ VLG GI +PD++V+D+ Sbjct: 194 PTTGKLHDW-QFRDQPANFVASFPTVLTCNNMEALRGATVLGLGIGYMPDFLVRDDLAAG 252 Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L +++ + +P + + + KL+ F +F+ Sbjct: 253 TLRTVLDAHLKHEGQFSVLWPSSRQLSPKLRVFVDFL 289 >gi|300694407|ref|YP_003750380.1| transcriptional regulator, lysr family [Ralstonia solanacearum PSI07] gi|299076444|emb|CBJ35762.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 297 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 8/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L F VAR SFT AA QL +S S++S I LET +GI+L R R ++ TE G Sbjct: 5 NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTIRALETRLGIRLLTRTTRSVSPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + +++ + E PSG +RI T + LL L + L YPD++ Sbjct: 65 ERLLQSIAPRFEEIDAELAAVGELRDTPSGTVRITATDYTIRTLLWPKLSKVLHDYPDLK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ + D DI + D +RL + + R + M P YL+ P + Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAVRIAPDLRMVIVGTPAYLETHPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L H I +P + W L R I L N I + G G+A Sbjct: 185 QDLTAHRCINL--RLPTHGGVYAWELKKGHREIQVRVDGQLTFNGIYEICDAALSGYGLA 242 Query: 243 LLPDYIVKDNPNLVR---IMEDVIT--PSFTVYF 271 LP+ + + + R ++ED P F VY+ Sbjct: 243 YLPEDLAQPHVAAGRLKWVLEDWFPTFPGFHVYY 276 >gi|260430570|ref|ZP_05784543.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260418599|gb|EEX11856.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 309 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ +D +R F V GS + A L +S + S +IS LE +G++LF R R L+ T Sbjct: 1 MSY-FDNIRTFVRVYELGSMSAAGRDLRISSAVTSSRISQLEERLGVRLFQRTTRSLSPT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +R +E+ +E+ + ++ + K G L +A + +G+ L+ + +FL YP Sbjct: 60 EHGKSFYRGATEILEAVESAEAKIVNVTEKLKGSLYVAAPLGVGRRLIAPKVPDFLAEYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L L ++ +D++ + D + L +P + S+L RK+ + AAP Y+ P Sbjct: 120 EVSVRLRLTDRKVDLTTEGLDLSFFLGQP-EDSTLRIRKIADVERLLCAAPSYIARRGMP 178 Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQ 233 L D H + P E F W ++ P G R + Y S + Sbjct: 179 ADGDALIRDGHECLNL--RFPGAQE-FQW--RLETPEGPRRFAV--TGRYESDDGDVLTD 231 Query: 234 YCVLGSGIALLPDYIVKDN 252 + + G GI + P + V ++ Sbjct: 232 WALSGQGIVMKPRFEVAEH 250 >gi|163760412|ref|ZP_02167494.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] gi|162282363|gb|EDQ32652.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] Length = 307 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 139/298 (46%), Gaps = 16/298 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++ +F V G F AAE+ L+ S +S+ ++ LE +G+KL R R L +T +G Sbjct: 8 DEIAIFVRVVERGGFAAAAEETGLTPSGVSKAVTRLEDRLGVKLLQRTTRRLMMTAEGEL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++ +E+T+ E+ + KP G +R+ ++ L L EF YP+I + Sbjct: 68 LLARGRDILAAIESTEAEVMAARGKPRGTIRVNVGTAYAKHRLAPALPEFRERYPEIDLI 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ++ +D+ + D AIR P+ SSL+ R+L A+P YL EP + Sbjct: 128 ISVADRRVDVIGEQLDVAIRT-GPLTDSSLVARRLGEATRVIAASPAYLAKFGEPKQASD 186 Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 L H +T F L W +D + I + + ++ + + + G GI Sbjct: 187 LKHHICLTVTGFSRL-------SEWPLKIDGKVTPVAIKTAVSCDNADILAEMALAGMGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L +++ D + L ++ D ++ + + P ++ +++AF +F+ + R Sbjct: 240 VRLGSFVIDDALSDGRLKPLLVDCHVSETVPITALMPPGRQHLPRVRAFVDFLVEQTR 297 >gi|294666374|ref|ZP_06731621.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603871|gb|EFF47275.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 303 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 17/290 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F + SFT AA + + +S+ ++ I+ +E +G++L R R + T G Sbjct: 4 FDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H+ + ++ + + V P G LR+ L ++ L L F YP IQ+ Sbjct: 64 LFHQRCMRILDDVDDAEGGFR--GVAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQIQL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R P++ S L+ R++ + A P YL+ P ++ Sbjct: 122 VMSESDRWVDLVEEGIDCVLRY-GPLRDSELVARRVAMLERLTCATPQYLQRFGLPAQLE 180 Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L+ H + IT G + P + L T P S L V S + LG Sbjct: 181 ALEHHRMVGLRSITTGVVTPLEFQTAQGLRTFALP------SPLSVTGTESYLAGIRLGL 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIA +P + V + LV I+ D PS V Y A + + +++ F Sbjct: 235 GIAQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVF 284 >gi|119468743|ref|ZP_01611795.1| predicted DNA-binding transcriptional regulator [Alteromonadales bacterium TW-7] gi|119447799|gb|EAW29065.1| predicted DNA-binding transcriptional regulator [Alteromonadales bacterium TW-7] Length = 295 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 139/293 (47%), Gaps = 19/293 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F V SGSF+ AA L+ + +SR +S LE + L R R L LTE+G Sbjct: 8 EDLEMFLTVVDSGSFSAAANLLNQQVAKVSRAVSRLENTLQCTLLNRTTRRLELTEEGHI 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + L+T + ++ PSGKLRI + L + EF + YP I + Sbjct: 68 FIKYARDGLNTLQTGEEAIKLLKQSPSGKLRIDAASPFVLHQLVPLIAEFNMQYPHIMLD 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ID+ D AIR+ ++ S+L +KL +H A+P YLKN E + Sbjct: 128 ITSHDSIIDLLEHKTDLAIRIGD-LKDSNLYAKKLGASKLHLVASPEYLKNAPELTQASD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCVLGSGIAL 243 L +H LI F D P NW P+ P ++ +S +I Q C+ GIAL Sbjct: 187 LGQHKLIGFTD-SPALN---NW------PLNIPSKLSFEITASSGETIRQLCIANQGIAL 236 Query: 244 LPDYIVKDN---PNLVRIMEDVI-TPSF--TVYFCYPEALKNTGKLKAFRNFI 290 L +++ ++ LV ++ + I TP+ + Y + + ++ AF +FI Sbjct: 237 LSHFMIGNDLKAGRLVNVLPNSIKTPNHREDIQAVYYKNSAVSSRIVAFLDFI 289 >gi|325926409|ref|ZP_08187734.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|325543198|gb|EGD14636.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 298 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 25/298 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AA+ L S +S++RQ++ LE +G +L R R ++LT GS Sbjct: 5 DAMRVFAAVAERNGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + +++P+G LR+ + G L L F YP +++ Sbjct: 65 YYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P + LI R+L + + A A+P YL P Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRILACASPAYLARAGTPRHPS 182 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 +L H + + GD + P G+ + L+ N+ + + Sbjct: 183 DLAGHECLLYHYSPSGDEV-----------RFQGPEGDIDVRLRGGLRANNGHVLNAAAL 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GI + PD++ + + LVRI+ D ++ Y K+++F +++ Sbjct: 232 AGQGIVMQPDFLAEPHLAAGRLVRILPDYALDEIGIFAVYTSRSHLAPKVRSFIDYLI 289 >gi|325913880|ref|ZP_08176239.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325539955|gb|EGD11592.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 308 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 17/297 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D ++ F V +GSFT AAE L +S++S+++ + LE + ++L R R + +T G+ Sbjct: 4 FDAMQAFARVVETGSFTKAAETLEMSRASVTQLVQQLEARLRVRLLNRTTRRVHVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + L ++ P G+LR+ + +L + F YPDIQ+ Sbjct: 64 AYYERVVRLLADMDDAETSLSAAATLPRGRLRVDVPSPFARLILMPAVPAFHARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC +R I SLI R + + YAAP YL P Sbjct: 124 DMGVSDRRVDLIGENVDCVVR-GGTIADQSLIARHVGDLTAGVYAAPSYLHRLGTPSHPS 182 Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL+ +H + F +P M + TV G ++ N+YL+ + Sbjct: 183 ELENTRHRCVGFMRWGATTTVPYAMRRGDEAVTVH---GRHVVAADDGNAYLAA---GLA 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ LP Y+ + LV + ED + + + KL+ F +++ Sbjct: 237 GMGVLWLPVYMAAAHVASGELVSVFEDWQLEPMPLSIAFAPNRHVSAKLRVFIDWVI 293 >gi|119471357|ref|ZP_01613829.1| putative transcriptional regulator, LysR family protein [Alteromonadales bacterium TW-7] gi|119445633|gb|EAW26917.1| putative transcriptional regulator, LysR family protein [Alteromonadales bacterium TW-7] Length = 297 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 5/287 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++V + VAR G+ T AAE L++ S++ R+I+ LE + +LF+RHARG +TE G Sbjct: 7 DWQDVKVAFEVARLGTLTAAAEALNVHHSTVLRRINSLEKNLDTRLFHRHARGYKVTEIG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +KL + LE ++ + G L + TT+ +++ ++F L+P +Q Sbjct: 67 AKLFATAQTIDTSLEQLHNDIAAADSTLRGSL-LLTTVSGFIDVMGDVCEQFQALHPQVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++IL+ K + + A A+R I + L + YA Y+ P S+ Sbjct: 126 LEVILEQKRLRLDHGQAHIALRAGPKPDEGDYIAQHLAKLTSGLYANKRYITKHGMPKSL 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L +HN ++ + F W D I +I L+V+ + + G GI Sbjct: 186 GDLLQHNFVSGVAGYNARVPYFAW---ADENIPASQIK-LRVSETAEATRAIIKGLGIGG 241 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + +LV ++ + V+ + T K++AF + Sbjct: 242 LQHDVAAQYSDLVPVLHSELNWPTDVWLVTHHLVHRTAKVQAFAGLL 288 >gi|304396844|ref|ZP_07378724.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304355640|gb|EFM20007.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 299 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 134/283 (47%), Gaps = 22/283 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++LR + V SGS T AA QL + S ISR +S LE+++ L +R R L LT Sbjct: 1 MKITLEELRAWVAVVDSGSITAAASQLAQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ +E + ++ PSG+LR+ +++ + +F YP Sbjct: 61 EEGQVFLEHARQILASVEQAEEQIALRREMPSGRLRVNAATPFMLHVIVPLVDDFRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ++L D+ ID+ D AIR+ + ++ S+L R L + + A+P YL P Sbjct: 121 LIQLELNTDDIMIDLLEQQTDIAIRIGE-LRDSTLHARLLGSSAIQLMASPAYLAKAGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYC 235 S+ +L +H I F P+ + + L +P G+ P IS +S +I Q Sbjct: 180 QSVADLAQHQKIGFSH--PESLNVWPVL----QPDGDFMRIKPTISA---SSGETIRQLA 230 Query: 236 VLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYF 271 + G GIA + D+ +++ P L D+ P VY+ Sbjct: 231 LAGQGIARISDFFSREDCATGRLVPVLSAETRDLRLPVHAVYY 273 >gi|257138245|ref|ZP_05586507.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 294 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 13/288 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR G+ + AA +L +++ R+++ LETE+ +L R AR TLT Sbjct: 2 FDWENLRHFLAVARVGTLSGAARELGADHATVGRRVTMLETELQTRLVERFARHCTLTGV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + S + + +Q + +G + ++ L N F YP I Sbjct: 62 GRRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L + + +S AD A+RL +P ++ +++ R++ + YAA Y P Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEADNVV-RRIGAMEFALYAARRY------PY- 173 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +QE + + + D M WL V G+ I+C ++ S G+GI Sbjct: 174 LQEPARWEFVGYDDPFDD-MPQQRWLKKV---AGKRAIAC-RLGDITSQYAATRAGAGIG 228 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + +LV + D + ++ LK + ++A +FI Sbjct: 229 MLPRFLPAASDDLVELDVDAEPFARDIWLVVHRQLKASPPIRAVMDFI 276 >gi|190895042|ref|YP_001985335.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT 652] gi|190700703|gb|ACE94785.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|327194376|gb|EGE61236.1| putative LysR family transcriptional regulator [Rhizobium etli CNPAF512] Length = 307 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 137/288 (47%), Gaps = 24/288 (8%) Query: 19 SFTHAAEQ---------LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F HAAEQ +S S+I + ++ LE+ +G++LF R R ++LTE+G+ L+ Sbjct: 11 AFVHAAEQQSYVAAARLAGVSPSAIGKAVARLESRLGVRLFNRTTRSISLTEEGTVLYEH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V + + + + +P G+LR++ +G +LL L F +P+I++ + + Sbjct: 71 YKRVLDDMRDAEAAVSKGRDRPRGRLRVSVPHIVGHHLLMPILPGFTARFPEIELDIDFE 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ ID+ + D +R + + + LI R L H A+P YL P + +L +H Sbjct: 131 DRVIDLITEGLDVVVRSGE-LADARLIARPLGEQHFVVCASPAYLDRHGRPETPDDLSRH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245 I F P W RP E PR L N+ + ++ G G+A LP Sbjct: 190 ACIHFK--YPSTGRTAPW---AFRPPSERLLLPR--SLTFNNTDAGLRAARDGLGLAHLP 242 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ + + L+ ++ + P ++ +P + + K++AF +F+ Sbjct: 243 VYVAEPHIRAGTLIPVLTAFMAPFGSLSLVWPSNRQLSPKIRAFVDFV 290 >gi|170701136|ref|ZP_02892110.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133958|gb|EDT02312.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 301 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE+++G++L +R R TLT+ G Sbjct: 5 DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E +I + + G LR+ +LG+ + + F +P++ Sbjct: 65 AQFHAQVLRILAEVERAEILMSDRRGTVGGVLRVTAPGELGRLRIAPLVAAFQRRHPELI 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + S++I R+L H A+P Y+ P Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRI-GSLADSTMIARELAPSHRVLCASPSYVAAHGLPAEP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H I GD P+ F+ + + L N + + G+GIAL Sbjct: 184 AELRAHRCIVMGDQ-PRAEWRFD---GAQGTVAVEVTAALLTNDGGAARTLALEGAGIAL 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V D LVR++ P+ ++ YP +++AF +F+ Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFL 289 >gi|160899751|ref|YP_001565333.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365335|gb|ABX36948.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] gi|222869730|gb|EEF06861.1| predicted protein [Populus trichocarpa] Length = 296 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 141/299 (47%), Gaps = 14/299 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + + VA S SFT AA L SQ ISR ++ LE ++G +L +R+ R ++LT Sbjct: 1 MDLNAVHLLIKVAESRSFTQAATLLGTSQPRISRAVAQLEKDLGTRLLHRNTRSVSLTPD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + LE + + + PSG LR+ LG+ +L L + L +P + Sbjct: 61 GCALVDRCAPLIAGLEEARQLVSDRRCAPSGVLRMTAPSMLGRIVLVPLLGQLLREHPQL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI ++ +D+ + D A+R+ P+ S +I R L + A+P YL P + Sbjct: 121 QIDTSFTDRMVDMVEEGFDAAVRI-GPLADSRMIARALPPLRWVTVASPAYLAARGTPQT 179 Query: 183 IQELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +QEL +H+ + G +P + +LA + P + +S +++ + Sbjct: 180 LQELAQHSCMAVYNHYLGRRVP-----WQFLAGNGEMLDWPAPQTVTFDSGDPLVEGSLG 234 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G G+A + ++ V+++ LVR++ + + YP + + ++KA + + Sbjct: 235 GLGVAQVMEFAVREHLQAGRLVRLLPQHEGRARELSLVYPRTRQASPRIKALAQLLLAQ 293 >gi|299532615|ref|ZP_07046004.1| LysR family transcriptional regulator [Comamonas testosteroni S44] gi|298719418|gb|EFI60386.1| LysR family transcriptional regulator [Comamonas testosteroni S44] Length = 287 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 18/297 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + LR+F AR S T AA++LH++Q+++S+ I LE +G LF R RGL LT Sbjct: 1 MQLPLNALRMFDAAARHQSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G L V ++ + ++E + ++ E +P L + L L +F L+P Sbjct: 61 DEGQALWPVVAQSFERIEQSLQQVAEP--RPREILTVGVVGTFAIGWLIPRLSQFQQLHP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L+ +N +D++ + D A+R + Q L+ + P + REP Sbjct: 119 YIDLRLLTNNNRVDLAGEGLDAAVRFGDGAWHGTHAQ-MLLRAPLSPMCTPMLAQQLREP 177 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L + L+ + E W A +D+ P +S L++ + G+G Sbjct: 178 ---ADLARQTLLRSY----RTQEWEGWFAGLDQ--AAPLARGAMFDSSLTLAEAAAQGAG 228 Query: 241 IALLPDYIVK---DNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IALLP + + LVR +V T ++ + Y ++ + + L+ FR ++ + Sbjct: 229 IALLPARMFEHMLQQGRLVRPFAHEVDTGAY--WLTYLKSRQASAALQTFRQWLMTQ 283 >gi|91224513|ref|ZP_01259775.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01] gi|91190855|gb|EAS77122.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01] Length = 307 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 105/190 (55%), Gaps = 1/190 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L + V+ G+F AA++ H+ +S++S+QI LE E+G++L R R L+LT G ++ Sbjct: 6 QLELLLDVSEYGTFAKAADRNHIDRSALSKQIKKLEDELGLRLLNRSTRSLSLTNAGVEM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +V L T+ +P G L+I+++ G+ L +KEF+ YP+I ++L Sbjct: 66 VAQAKKVREVLTETRSIAATFQDEPKGNLKISSSTFFGRAYLNQAVKEFIKQYPNITVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +LD+ +D+ + D R+ PI+ S++I RKL + +M A+ ++ P S +EL Sbjct: 126 LLDDNRVDVIHEGFDVVFRI-GPIRESNMIVRKLASNNMALVASKSFIDKYGTPSSPEEL 184 Query: 187 DKHNLITFGD 196 K + + + Sbjct: 185 IKMPAVIYSN 194 >gi|330808819|ref|YP_004353281.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376927|gb|AEA68277.1| putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 295 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 24/277 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR GSFT AA L ++QS++S+ +SGLE + I+L R R ++ T G +L + Sbjct: 12 FVTIAREGSFTRAASVLGVTQSALSQAMSGLEARLEIRLLTRTTRSVSPTAAGERLLKAI 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL----YPDIQIQL 126 + ++E EL E KP+G +RI G+++L+ +L L YPDI+I+ Sbjct: 72 GHRFDEIEAELDELTEMRDKPAGTVRITC----GEHILRAHLLPKLTPLLLDYPDIKIEF 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ DI D D +R+ I + + M A A+P Y + P + ++L Sbjct: 128 DINYGFRDIVADRFDAGVRMGDTIDKDMVAVPIGPQLRMAAAASPTYFERHPTPKNPRDL 187 Query: 187 DKHNLI-----TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 KH+ I T G L + W +P+ L N+ S++ + G G Sbjct: 188 LKHSCINQRMQTAGGL-------YVWEFERRGQPLNVRVDGQLVFNTSPSMVDAALAGLG 240 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 IA LP+ +N LVR++ED P + YP Sbjct: 241 IAYLPEEEFAPHLENGRLVRVLEDWCAPFPGYHLYYP 277 >gi|326387788|ref|ZP_08209394.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207834|gb|EGD58645.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 303 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 3/186 (1%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 +AR GSF A S +SR+++ +E E+G ++F+R R ++LTE G+ R + Sbjct: 12 IARRGSFARVARDRGADPSWVSRKVADIEDELGFRIFHRTTRRVSLTEAGTIYLREAETI 71 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 L+ + S PSG LRI T+ GQ +L L F YP + ++L+L + + Sbjct: 72 VEALDRARDNALSVSQVPSGTLRITCTVAFGQKILVPLLPRFRRDYPQVDLELVLSDASL 131 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ D D AIRL P S + KL A+P YL+ P + L H+ + Sbjct: 132 DLVEDRIDLAIRL-GPGVSGDFVVSKLRDTRYRVCASPDYLRRQGRPATPAALAGHDCLR 190 Query: 194 FGDLIP 199 F L+P Sbjct: 191 F--LLP 194 >gi|300989685|ref|ZP_07178958.1| transcriptional regulator, LysR family [Escherichia coli MS 45-1] gi|300407301|gb|EFJ90839.1| transcriptional regulator, LysR family [Escherichia coli MS 45-1] Length = 302 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 10/205 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M +P Y P + Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL 208 EL H +C+ + W+ Sbjct: 185 HELQNH----------RCINNVTWI 199 >gi|296115297|ref|ZP_06833936.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295978120|gb|EFG84859.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 306 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 134/275 (48%), Gaps = 9/275 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF +G F+ AAE+L LS+S++ + ++ LE + +LF R R LTLTE+G Sbjct: 6 ENISVFVEAVEAGGFSRAAERLGLSRSAVGKAVARLEERLDARLFNRTTRVLTLTEEGQI 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + + L GK+R++ I G++ + L E YP++ + Sbjct: 66 YYDKCRRALKELRSGEELLHAGRTDVVGKVRMSMPILFGRHCVTPILLELARQYPNLDLD 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR S L RK+ + + AAP Y +P +I + Sbjct: 126 LRFSDLLVDVIGEGFDLAIRQGPIADGSGLRIRKICSQNKIICAAPSYFSERAKPQTIHD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L+ H+ + + + F W L +D + ++ LQ ++ +I+ V G GIA Sbjct: 186 LEMHDALVYW----RSNRLFPWQLRDLDGNLQNCKLKWRLQFDNLEAIVDAAVAGLGIAW 241 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPE 275 LPD++++ + N L+ +++ + + + +PE Sbjct: 242 LPDWLIRPHLNEGRLLSLLDGFPSTAVDTFAVWPE 276 >gi|325981871|ref|YP_004294273.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212] gi|325531390|gb|ADZ26111.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212] Length = 291 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 7/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V ++ SF AA+ + + S++SR+IS LE +G++L +R R +TLTE G Sbjct: 5 DDMALFVEVVKAKSFRGAADIIGIPNSTLSRRISALEKSIGLRLLHRTTRRITLTEAGQI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L E +PSG LR + +D + + EF LYP I Sbjct: 65 YFERCKRIVDEAKLAHEQLGEMLEQPSGVLRASLPVDFAVTYMTPLIAEFARLYPGIVFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ D+ + D AIR+ +P ++ LI R L + ++ YA+P YL E + Sbjct: 125 FDLTSRRADLVSEPFDVAIRIGEP-ENPQLIARPLGVLPVYLYASPRYLDRSGELAEPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + G + N T++ IG S ++NS I + L GI ++ Sbjct: 184 LAHHECL--GIMKSNTWTLHNGAHTIEVSIG----SRFKLNSVGMICRLAALDMGIIMMW 237 Query: 246 DYIVKDN 252 + IV D+ Sbjct: 238 EKIVADD 244 >gi|197251294|ref|YP_002148535.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214997|gb|ACH52394.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 300 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 124/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + D W+ T L VNS + C+ G Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFETPHDMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275 >gi|167835265|ref|ZP_02462148.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 298 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 125/285 (43%), Gaps = 10/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A +GSF A L LS + + + LET G++L R R +LTE G + Sbjct: 1 MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V + + P G LRI I G + L L +L YP++++ L Sbjct: 61 ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYLRAYPEVRVDLT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D + D IR+ P+ S LI R L + A+P YL P + +L Sbjct: 121 LSDRVVDFVDEGYDAVIRI-APLADSGLIARPLAPYRLVLCASPAYLAERGTPATPADLA 179 Query: 188 KHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 H + F P +E F + R+ S L VN+ ++ + G GI L Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSV---RVRSRLAVNNGAALRMAALDGLGIILQ 236 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P +V+D+ LVR++ P+ ++ Y + T KL++F Sbjct: 237 PAELVRDDLAAGRLVRLLPGHEPPARPIHLLYSPDRQPTPKLRSF 281 >gi|82778551|ref|YP_404900.1| putative DNA-binding transcriptional regulator [Shigella dysenteriae Sd197] gi|309785569|ref|ZP_07680200.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae 1617] gi|81242699|gb|ABB63409.1| quorum sensing regulator A [Shigella dysenteriae Sd197] gi|308926689|gb|EFP72165.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae 1617] Length = 309 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+G+A +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGLAYVP 240 >gi|319795723|ref|YP_004157363.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598186|gb|ADU39252.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 309 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 14/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++ + +A +GS + AAE L LS ++ SR +S LE +G +L R+ R L LT+ G Sbjct: 4 WTEIALLVQIADAGSLSRAAEALGLSNAAASRHLSALEARLGARLVERNTRRLYLTDTGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L + + +++ P+G LRI ++ + + L+++ YP + + Sbjct: 64 EFCARAKTILADLADAESTVNATALNPTGVLRITASLSFSIHHIAPLLRDYTQRYPGVTV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + N+ D+ + D AIR R+ S++ R+L A+P Y P ++ Sbjct: 124 HVEAANRYFDLIDNNIDVAIRTREYEPDSNVTIRRLGETRRVLAASPRYFAQHGFPKTLD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 EL +H L LI + N L + GE L+ N + + G G Sbjct: 184 ELKRHKL-----LIYTHANNPNELRFTRK--GETHTVSVTGLLESNDGQVLRAAALDGMG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P YIV ++ LV ++D P T+ YP + K+++F +F+ Sbjct: 237 ILVQPTYIVYEDIVAGRLVPTLDDWDLPHLTINLAYPSRKHLSAKVRSFIDFM 289 >gi|289624296|ref|ZP_06457250.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646577|ref|ZP_06477920.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330870144|gb|EGH04853.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 299 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 13/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF +A GSFT AE + + ++R I LE + ++LF R R + LT +G + + Sbjct: 1 MQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 RV + + ETT + + S G+LRI Q +LK F +PDI++ L Sbjct: 61 ERVKNNLADLAETTSMFDRNGSTL-RGRLRIDIPAAFSQRSFMESLKGFTQAFPDIELAL 119 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ + DCA+R+ + + SSL+ R++ M AAP YL+ P ++ EL Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLDEL 178 Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H ++F L + W L D P+ P + VN + +Q + G GI Sbjct: 179 AGHCGVSF--LSGQSNRPLPWHFSLNGDDFPV--PPRGGITVNESNAYVQCGLAGFGILQ 234 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P V+ + LV ++E V YP +++AF Sbjct: 235 APGITVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAF 280 >gi|293608019|ref|ZP_06690322.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828592|gb|EFF86954.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 310 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 13/255 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LR F V + +F++ A + +S S ISR I LE +G +LFYR+ R +T TE Sbjct: 6 SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + Q LQ+ +++PSG +RI + GQ + L + YP Sbjct: 66 SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLADLSERYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+LI ++ ID + D R+ + SS R T H A+P Y+ Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGT-LTDSSFHARIFGTQKYHLAASPQYVAEYGVLD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 EL++H + + K E N WL V +P E P L N+ S+M + Sbjct: 185 QPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWIHYPITPLLSSNNAESLMTAAL 237 Query: 237 LGSGIALLPDYIVKD 251 G GI L PD+++ + Sbjct: 238 HGMGIVLFPDWLIGE 252 >gi|229590461|ref|YP_002872580.1| LysR family transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229362327|emb|CAY49229.1| LysR family transcription regulatory protein [Pseudomonas fluorescens SBW25] Length = 300 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 17/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF A +GS + AA L L+ ++ S + LET +GI+L R R + LTE+G + Sbjct: 7 LEVFVRTADTGSLSAAARGLGLTPAAASIALKRLETRLGIRLLARSTRSMRLTEEGRRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L + +++ SG L++A D G+N+L G L EF L +P+I++QL+ Sbjct: 67 ESVRVALEALSEGEQAIKQQGQSLSGLLQLAAPSDFGRNVLLGWLDEFKLEHPNIRLQLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186 L++ + D+ D D A+R P + SSL+ +V H A+P YL P + +L Sbjct: 127 LNDSNADLFRDTVDIALRFGVP-RDSSLVALPVVPGHHRIPCASPDYLARHGTPRTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGI 241 +HN + + + + + W D + E ++ YLS + ++ + G GI Sbjct: 186 AQHNALRY---MRQGRANSTWYFRQDTALQEVEVT----GDYLSDDGEIVRRWALAGHGI 238 Query: 242 ALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A + I +D LV ++ D P L+ + ++K F+ Sbjct: 239 AYKANLDIARDIQAGRLVPLLPDWQGEPTPFNLMCPHRLQVSERVKVLHRFL 290 >gi|207723315|ref|YP_002253714.1| hypothetical protein RSMK00567 [Ralstonia solanacearum MolK2] gi|206588513|emb|CAQ35476.1| hypothetical protein RSMK00567 [Ralstonia solanacearum MolK2] Length = 309 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QLETFVAVTTRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + +FL +PD+ I L Sbjct: 66 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L AAP YL+ P ++ L Sbjct: 126 DLGDRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEHL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 HN + FG W+ D ++ ++ + ++C+ G G+A Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289 >gi|107025345|ref|YP_622856.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693472|ref|YP_839005.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105894719|gb|ABF77883.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116651472|gb|ABK12112.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 306 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A GS++ AA L ++ S+IS+ I LE IKLF R R LTLT++G LH Sbjct: 14 AFSRAASLGSYSAAARALGVTPSAISKSIQRLERHFEIKLFNRTTRSLTLTQEGRDLHER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 T + ++E + + +P+G L++ + +G +L+ L F +P + I L L Sbjct: 74 TLRLLSEMEAIEQAAASARSEPAGILKVTAPLPIGVHLIAPALPAFRQRFPKLSIDLRLG 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D A+R+ + S L+ R L ++ AYA+P YL P EL +H Sbjct: 134 DHFVDLVGEGIDVAVRVGD-LTGSRLVSRALSPHYIGAYASPDYLAKRGVPRHPDELVEH 192 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + F + W AT + P+ + + V++ ++ G G+ + P Y+ Sbjct: 193 DCVNF--RFQSSGQVLRWTFATDEGPLSLTPDADIVVDTSDAVAAVMAAGGGVGISPTYV 250 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV I+ + + P T+ +PE+ +++ +K ++ Sbjct: 251 AAAYVRRGELVPILTEFVEPRSTITALWPESRRSSPNVKVLLAYL 295 >gi|330958333|gb|EGH58593.1| LysR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 303 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 11/272 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + +F V RSGSF AA QL + +++SR+I LE ++ +L R R L LT Sbjct: 1 MVPDLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQQLEAQLDTRLLQRSTRKLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + L +L +P G++RIA T D + +FL YP Sbjct: 61 PAGQDFYERCMGAVDGLTDAAEQLVSRREEPGGRVRIAATADFFDFFSMDWVADFLARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179 +Q++ +L + D+ + D A R P+Q S + R+L+ A+P YL Sbjct: 121 RVQLEFVLSDDRADLIAERLDIAFR-GGPLQDSGYVGRQLIDEERDCMVASPAYLATHGM 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P S++ L H + P + L ++ + E +I+ N+ ++ + + G Sbjct: 180 PASLESLQAHYCVCAAH--PGSFNTWRLLGPEEK-LHEVQIASRFNANTAQALRKAALAG 236 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270 GIALLP +++ + + + ++ P T Y Sbjct: 237 LGIALLPTTLIRAD-----LRKGLLVPVLTQY 263 >gi|114799792|ref|YP_760089.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739966|gb|ABI78091.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC 15444] Length = 300 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF +A GSF+ A +L LS S+ISR + +E +G++L R R LTLT +G Sbjct: 15 LEVFAAIASEGSFSAAGRRLDLSASAISRTVDRIEERLGVRLILRSTRALTLTAEGQAYL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + + P G+LR++ + G+ + L +F +LYP I + + Sbjct: 75 SAARRILTDLDEAEQSIADQGA-PRGRLRVSAALAHGRLCIVPLLGQFSVLYPHILVDIS 133 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR P+ S L+ RKL A+P Y+ P ++L Sbjct: 134 LTDNVVDIAAGETDVAIRF-GPLADSPLMARKLGESGRVIVASPDYIARNGAPEMPEDLY 192 Query: 188 KHNLITF 194 +HN ++F Sbjct: 193 RHNCLSF 199 >gi|78062531|ref|YP_372439.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77970416|gb|ABB11795.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 315 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + +PD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQFPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P+ Q+L Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPVRPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L W+ ++ P G +I +Q N+ S+ G GI + Sbjct: 186 SAHACLT---LCTPAFPTHEWV--LEGPEGVEQIHVTGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + LVR++ I VY YP R F+ K R W Sbjct: 241 LPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|221068556|ref|ZP_03544661.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220713579|gb|EED68947.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 294 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 136/289 (47%), Gaps = 8/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F ++R+ S AA L + Q+++ R+++ LE+E+G KLF R G LT Sbjct: 1 MNWDDTRIFLALSRTHSLRAAARSLGIDQATVGRRLNALESELGAKLFLRAKDGYLLTAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +++ P G +R+ +T + +LL ++ +P+I Sbjct: 61 GEVALAAAKRMESAALDLRTKIEGQDENPGGLVRVTSTDSIAIDLLLPAVERLQRHWPNI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + + + + AD A R +P + L+ R++ + + +A+ YL EP Sbjct: 121 RVDLEVSTQLLSLGRRQADIAFRNVRP-DTPELVVRRVASWPVGLFASTSYLARFGEPAP 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H+L+ +G +E +L+ P + +I + V S L + + G GI Sbjct: 180 EDELRGHHLVAYG----PYLEQSPFLSMAGVPARQAKI-AMSVRSSLLVRKAVAAGIGIG 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290 +P ++ + LVRI P+ + V+ L+ T +++A F+ Sbjct: 235 EMPLWM-GEREGLVRIWPQRRRPNDYEVWQVMHPDLQRTARVRAVAQFL 282 >gi|260855028|ref|YP_003228919.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O26:H11 str. 11368] gi|257753677|dbj|BAI25179.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O26:H11 str. 11368] gi|323153526|gb|EFZ39779.1| transcriptional regulator, LysR family protein [Escherichia coli EPECa14] Length = 299 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP + Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGHHLYYPHRRHAG--SAFSLFI 290 >gi|259909882|ref|YP_002650238.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96] gi|224965504|emb|CAX57036.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96] gi|283479966|emb|CAY75882.1| probable RuBisCO transcriptional regulator [Erwinia pyrifoliae DSM 12163] Length = 302 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 137/301 (45%), Gaps = 20/301 (6%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MS D+LR F SGSFT AA +LH++ S++S+ I+ LE +G +LF R R L Sbjct: 1 MSVSEDRLRGIAPFVASVESGSFTAAAGRLHITSSAVSKSIARLEARLGSRLFERTTRSL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT+ G + + V +L + L P G+LR+A G+ + L +F Sbjct: 61 LLTDAGQAFYDTCARVLSELAEAESVLAAQRSIPVGRLRVAVPHTFGRLHVMPMLNDFCR 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176 +P++Q+ L ++ +D+ + D A+R+ P SL R L + + AAP YL Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGVDMAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM---- 232 P S+ +L++ I + + W V P G RI+ V +++ Sbjct: 181 HGTPQSLAQLEQRQAIVYARIDGSTSP---W--HVASPDG--RITTRTVAHRMALADGEA 233 Query: 233 --QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 V G G+A + +++++ LV ++ + P +Y +P + K+ A Sbjct: 234 QRSAVVAGLGVAQMATWLMEEQLARGELVPLLPQLAVPGLPLYMVWPRRKQLMPKVGALL 293 Query: 288 N 288 N Sbjct: 294 N 294 >gi|293414655|ref|ZP_06657304.1| LysR family transcriptional regulator YcjZ [Escherichia coli B185] gi|291434713|gb|EFF07686.1| LysR family transcriptional regulator YcjZ [Escherichia coli B185] Length = 299 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SILGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|152982397|ref|YP_001353609.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282474|gb|ABR90884.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 284 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W LRVF +AR G+ AA +L +Q ++ R++ LE VG KLF R + G LT++ Sbjct: 2 MEWSDLRVFLAIAREGTLGAAARKLGQTQPTMGRRLRALEEAVGHKLFQRGSSGFILTDE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + + E Q +L + G LRI ++ G ++L L +F ++P + Sbjct: 62 GAAVLIHAERMADEAEAFQRQLAGQDQQLEGLLRITSSDWFGTHVLAPVLADFTRMHPRV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L+ D + ++ AD A R+ +P + + RKL+ + YAA K P Sbjct: 122 TIELLTDARVFSLARREADLAFRI-QPFDEADVAARKLLHMPYGLYAA----KGMARP-- 174 Query: 183 IQELDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Q D L+T D D WL R + +I+ L+ N+ Q C G+G Sbjct: 175 -QAGDGAGSMLVTM-DTAFDGAPDAVWL---KRLLPHAQIA-LRSNNRDVQAQMCAHGAG 228 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +A+LP + P L + P + Y + L+ +L++ + + + D Sbjct: 229 LAVLPRLLGDKFPGLDLVDLGEAPPGRDTWLGYHKDLRQLARLRSLLDLLIERLAD 284 >gi|311277796|ref|YP_003940027.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1] gi|308746991|gb|ADO46743.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1] Length = 308 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 14/253 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA+QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAAKQLQMSVSSISQTVSRLEDELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAKITAEMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R++ ++ M AA YL+ P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRIGSMPMVVCAAKSYLQQAGTPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H+ + + + +F +AT P G N +++ ++ G+GI Sbjct: 185 ASHSWLEYS---VRPYNEFELIGPEGIATRLTPQGR-----FVTNDPMTLSRWLNAGAGI 236 Query: 242 ALLPDYIVKDNPN 254 A +P V D N Sbjct: 237 AYVPLMWVIDEIN 249 >gi|262403219|ref|ZP_06079779.1| transcriptional regulator [Vibrio sp. RC586] gi|262350718|gb|EEY99851.1| transcriptional regulator [Vibrio sp. RC586] Length = 296 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 17/279 (6%) Query: 4 DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW ++ + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 2 DWIQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPDI Sbjct: 62 GALFYQRAKTQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQLI + R + + S S L YA+P YL+ P + Sbjct: 122 RIQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEHQAGFYASPSYLQKQGTPKT 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 +QEL +HN++ +G+ + +++ RI+ + ++ G Sbjct: 182 LQELTQHNVLCWGEQTFREVKNAQ----------GKRITLTGNFATTNPEALFYAGKSGM 231 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G+ + ++K+ NL+RI+ D+ TVY YP+ Sbjct: 232 GVIVTGHIMIKEELKQGNLMRILPDITVDEATVYAYYPK 270 >gi|190890900|ref|YP_001977442.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190696179|gb|ACE90264.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 299 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 15/298 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G F+ AA +L++S + + + LE +G++L R R ++LTE G + Sbjct: 7 LAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTETGKYYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +S++ +L+ S P G L++ T+ + + LL E++ LYP I + Sbjct: 67 ERSSQILAELDEADRTASALSTTPRGTLKVYTSGSIVRFLLP-VFSEYMELYPSISVDFS 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D IR P SSLI RKL +P Y+ + PL E+ Sbjct: 126 VGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPLPLKPAEIA 183 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 HN + + P E W D ++S V++ ++++ L G G+ L P Sbjct: 184 DHNCLQYA-YYPYGDE---WRFEDGDGRQESVKVSGNVVSNNAEMLRFLTLNGRGLFLAP 239 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 ++V D+ L+RIM D FT+ YP K++ F + + F + R W Sbjct: 240 SFVVFDDIAEGRLIRIMPDYRPVEFTINAVYPNRSHLPTKVRLFIDLLAERFAEHRKW 297 >gi|54308594|ref|YP_129614.1| LysR family transcriptional regulator [Photobacterium profundum SS9] gi|46913023|emb|CAG19812.1| Hypothetical transcriptional regulator, LysR family [Photobacterium profundum SS9] Length = 300 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 133/290 (45%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V + GSF+ AA ++ + I + I LE +G KL R R +LTE G + Sbjct: 7 MQAFVSVVQHGSFSGAAADCSVTPTMIGKHIKFLEVHLGTKLLNRTTRKQSLTEAGQIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + LQ KP G +RI + + G +L + +FL YP+I I Sbjct: 67 LECKRILDDIAEAENSLQTLENKPKGTVRINSPVTFGNIVLAPIVADFLQDYPEINIDFT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID D D IR+ + + SSSLI R++ M A+ YL C P S+ EL Sbjct: 127 LDNSLIDPLHDPFDLVIRIGE-LASSSLIAREIARYEMVFCASADYLSECGTPTSLDELL 185 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H + F GD+ N +D + + + L NS ++ + G+GI L P Sbjct: 186 RHQCLGFSYGDV------HANLALLLDTLAFDKQHTRLISNSGQALKVAALKGAGILLQP 239 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYP-EALKNTGKLKAFRNFIF 291 ++ D + LV I+ V+ Y +AL K +AF +F+ Sbjct: 240 RLLLNDELSSGQLVEILSSDTPKPMPVHLLYKRKALPL--KTRAFVDFLL 287 >gi|283788115|ref|YP_003367980.1| LysR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282951569|emb|CBG91268.1| LysR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 309 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 131/289 (45%), Gaps = 11/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G Sbjct: 6 RMTVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + E R I + R N ++I ++ G+G+A +P Sbjct: 185 ANHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTISRWLTAGAGVAYVPL 241 Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V + N R +++ P + VY Y E K K++ N++ Sbjct: 242 MWVINEIN--RGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 288 >gi|237808161|ref|YP_002892601.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237500422|gb|ACQ93015.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 296 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 134/281 (47%), Gaps = 18/281 (6%) Query: 3 FDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 +WD+LR VF V SGS T AA++L ++ S++S+ I LE +G+ L +R R LTL Sbjct: 2 LNWDRLRGMVVFASVVESGSMTSAADKLGMTASAVSQHIRQLEQSLGVTLLHRSTRKLTL 61 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +E G + T+ + + + LQ +P G+++I + L L L F+ Y Sbjct: 62 SEAGRHFYPGTAAMISAVREAEEGLQILRDQPVGEVKITAPLGLSHGPLNSVLIPFMQQY 121 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P ++I L + + D+ + D AIR P++ S+L+ ++L + M A A P YL N Sbjct: 122 PGLKITLDCSDVERDLIAEGYDLAIRF-GPLKDSALVAQRLTSCRMIAVATPAYLDNAGI 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P ++L + I ++ + W V + L + L Q+C+ Sbjct: 181 PQQPEQLMQLRWILSQPQTSLSLQHTHGQRWQGKVK--------AQLVGSDILLQRQWCL 232 Query: 237 LGSGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYP 274 G+++ P I++ + LV ++ D +PS +Y P Sbjct: 233 AHMGVSIQPYSEIIELLADETLVPVLPDWQSPSAGLYAVTP 273 >gi|87121592|ref|ZP_01077480.1| transcriptional regulator [Marinomonas sp. MED121] gi|86163124|gb|EAQ64401.1| transcriptional regulator [Marinomonas sp. MED121] Length = 317 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 15/293 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +WD ++ F ++RSGS AE+ +S S+ISR+I LE +G KLF R+ G +TE Sbjct: 23 TINWDDVKFFLALSRSGSARSVAEEFGMSHSTISRRIDQLEKSLGSKLFNRNVSGYQMTE 82 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L E ++ + L K G L + T + LL L F +P Sbjct: 83 DGLALSHYAKEAEEAMKGAEQVLMGKDAKLVGNLHLTTPDVIANKLLMPELASFSQEFPQ 142 Query: 122 IQIQLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I + + + + ++S AD AIR R + +LI RKL + YA P YL Sbjct: 143 INLNITVSSNRFNLSRYEADIAIRFIERGGVPPENLIGRKLSDVATCLYATPAYL--AEH 200 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLG 238 L + + L + P +W+ + P P + C+ +N L ++ G Sbjct: 201 TLQGESITARWLGWTAEKQP------DWV--LKSPY--PDVPCIHTLNQGLLHLEAVKAG 250 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+ + P ++ L+RI ++ ++ + +L+ F+ FI Sbjct: 251 MGMGMFPCFLADKCDELIRIPGAKPQLTYEIWLLSHPDYREVARLRRFKQFIL 303 >gi|94312821|ref|YP_586030.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356673|gb|ABF10761.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] Length = 317 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 9/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A +GSFT AA ++ +++SR IS LE +G++LF R R + LTE G Sbjct: 13 IELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEKRLGVRLFVRSTRSIRLTEGGRSYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++L + ++ V+PSG LRI+ G L L +P ++ ++ Sbjct: 73 EQCRGALNQLIEAERKVTGEQVQPSGTLRISAPTTYGHYRLLPLLPALRERFPLLRFEVQ 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N++ID + D AIR R S+++ R L + A+P YLK P ++++L Sbjct: 133 IGNRNIDFHEENFDVAIRFRAQ-PDSTMVSRHLEDAELVVVASPGYLKRAGRPQALEDLQ 191 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H I F +P WL +R + L L+ + G+G+ Sbjct: 192 QHECIQFD--LPSSGRPIAWLFMDGGREREVLATESHYLCAEDVLAGVTLARSGAGLFQT 249 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +IV+ + LV +++ S V YP +++ F +F+ Sbjct: 250 YRFIVERDLADGTLVEVLQPFAGRSRPVSLMYPHGRLLPSRVRVFVDFL 298 >gi|293394899|ref|ZP_06639189.1| transcriptional regulatory protein [Serratia odorifera DSM 4582] gi|291422650|gb|EFE95889.1| transcriptional regulatory protein [Serratia odorifera DSM 4582] Length = 303 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 139/295 (47%), Gaps = 20/295 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++L+ F VA +G + AA +L +++S +SR+++ LE +G++L R RG LTE G Sbjct: 7 NIEELQTFVEVADAGGISPAALRLGIAKSIVSRRLARLEKALGVQLLARTTRGTALTEAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLY 119 + T Y +I+ ++ P+ G+LR+A + G + E + Sbjct: 67 A-----TFRDYAARACAEIDAARETILPTGELRGRLRVAVPLSFGSTHFAPAIAEMARRH 121 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + IQ ++ +D+ + DCAIR+ +Q S+LI R++ I+ A+P Y++ + Sbjct: 122 PRVNIQACYSDRFVDLIAEGYDCAIRVGY-LQDSNLIARRIGPIYGKLVASPDYIQAHGQ 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P S +EL H + G + + D + + TV RP G + ++ +++ G Sbjct: 181 PNSPEELLSHQALMQGTETWQ-LTDGDKIITV-RPQGR-----FKADNGTALVAAATAGL 233 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA LPD + + LV +M + P Y P K++ + Sbjct: 234 GIAYLPDCLTHPHLASGALVPVMINHPPPPAGAYVIRPPGQHPARKIRVLTELLI 288 >gi|238751395|ref|ZP_04612888.1| HTH-type transcriptional activator aaeR [Yersinia rohdei ATCC 43380] gi|238710453|gb|EEQ02678.1| HTH-type transcriptional activator aaeR [Yersinia rohdei ATCC 43380] Length = 303 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V GSFT AA QL +S SSIS+ +S LETE+ IKL R R + LTE G Sbjct: 6 RMSIFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNIKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLASMTAEMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGMPAPDLIADGLDIVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQYGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMANFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA +P Sbjct: 229 WLNAGAGIAYVP 240 >gi|238026873|ref|YP_002911104.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237876067|gb|ACR28400.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 300 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS + AA ++ + I R+I LE +G+KL R R LTLT +GS Sbjct: 6 QIETFIAVAAKGSLSAAAHAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + VK SG LR++ G+ + + F +PD+ I L Sbjct: 66 LEDCQRIVNDMQNAEASVSAGGVKASGHLRVSGPAGFGRRHVAPLVPAFTAAHPDVSITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+RL + + SSL+ KL A+P YL P ++ +L Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPATLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 H + L + W D R+ ++ + + ++C+ G G+A Sbjct: 185 AGHQCLA---LAANANQQRGWTFQHDGGTVSIRVNGTMECSDGAVLHEWCLDGHGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ + + +++ F +F+ Sbjct: 242 WWEVGADIRAGRLVSVLDAFAAPPIGIHAVFAQRRHLPLRVRLFLDFL 289 >gi|170737251|ref|YP_001778511.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819439|gb|ACA94021.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 306 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 7/285 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A GS++ AA L ++ S+IS+ I LE IKLF R R LTLT++G LH Sbjct: 14 AFSRAASLGSYSAAARALGVTPSAISKSIQRLERHFEIKLFNRTTRSLTLTQEGRDLHER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 T + ++E + + +P+G L++ + +G +L+ L F +P + I L L Sbjct: 74 TLRLLSEMEAIEQAAASARSEPAGILKVTAPLPIGVHLIAPALPAFRQRFPKLSIDLRLG 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D A+R+ + S L+ R L ++ AYA+P YL P EL H Sbjct: 134 DHFVDLVGEGIDVAVRVGD-LTGSRLVSRALSPHYIGAYASPDYLAKRGVPRHPDELVDH 192 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + F + W AT + P+ + + V++ ++ G G+ + P Y+ Sbjct: 193 DCVNF--RFQSSGQVLRWTFATDEGPLSLTPDADIVVDTSDAVAAVMAAGGGVGISPTYV 250 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV I+ + + P T+ +PE+ +++ +K ++ Sbjct: 251 AASYVRRGELVPILTEFVEPRSTITALWPESRRSSPNVKVLLAYL 295 >gi|83647489|ref|YP_435924.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83635532|gb|ABC31499.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 296 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 17/287 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V + G F+ A +L+LS+ +S+ + LE +G +LF+R R + LT G + Sbjct: 1 MRAFCAVVQEGGFSAAGRKLNLSKVLVSKYVGQLEDRLGARLFHRTTRKVRLTPTGEAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + +L+ + +++ +P G LRIA + L + L YP + + + Sbjct: 61 LRVSPLLRELDDIEARVRDEHGEPEGLLRIAAPASFAEIHLMPLVALMLEKYPGLTLDVR 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D A+R+ +Q SSL+ +KL I + A YL+ + P S +L Sbjct: 121 LADRYVDLLEEQVDLAVRIGY-LQDSSLVAQKLADIPIVWCAGAAYLERRKAPQSPDDLA 179 Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H +I + GD P E V R R+S VNS + + + G G+A Sbjct: 180 EHCVIFDSNYSGGDYWPVPRE-----GGVTRQPMRKRVS---VNSARAAKELALAGMGLA 231 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP +++ D + L ++++ + VY YP + +++ F Sbjct: 232 RLPAFVIGDELASGELRPVLQEYWPEASAVYAVYPHRRHLSARVRLF 278 >gi|26247794|ref|NP_753834.1| putative transcriptional regulator YcjZ [Escherichia coli CFT073] gi|26108196|gb|AAN80396.1|AE016760_255 Hypothetical transcriptional regulator ycjZ [Escherichia coli CFT073] Length = 315 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 10/205 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 18 NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 77 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 78 ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 137 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M +P Y P + Sbjct: 138 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 197 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL 208 EL H +C+ + W+ Sbjct: 198 HELQNH----------RCINNVTWI 212 >gi|325131644|gb|EGC54350.1| transcriptional regulator, LysR family [Neisseria meningitidis M6190] gi|325139008|gb|EGC61555.1| transcriptional regulator, LysR family [Neisseria meningitidis ES14902] Length = 303 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAAGALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|154252920|ref|YP_001413744.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156870|gb|ABS64087.1| transcriptional regulator, LysR family [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 14/296 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ LR F VA +GS + A +QL ++ +++ R+++ LE ++G +LF R G LT Sbjct: 1 MNWNDLRFFLAVAAAGSLSGAGQQLGVNTTTVLRRVASLEDDLGARLFERERTGYRLTAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G KL V +L + + G +R+A + +LL L F +P + Sbjct: 61 GEKLVEALEPVDRRLSALPRDFAAAGEGAEGTVRLAAGEVVASSLLAPELAAFRRDHPGL 120 Query: 123 QIQLILDNK--------DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 +++++ D + I + D A+RL +P Q L+ RK+ + YA P YL Sbjct: 121 ELEILTDPRLASVGPAPRIGNPLKDVDVALRLARPTQGDMLM-RKVGDMAYGLYATPTYL 179 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P + + H+LI F PK + R R++ L+ +S L+ + Sbjct: 180 DKHGRPSGMAAIAGHDLIGF----PKSETPLGPVWWFSRAEKSARVA-LRSSSVLARAEA 234 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A LP + + +L R+ S ++ L ++A F+ Sbjct: 235 ARQGLGLAALPCILGDADADLERVFGPDDIGSLEMWLMARNDLAQLAHVRAVMEFV 290 >gi|167644480|ref|YP_001682143.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167346910|gb|ABZ69645.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 293 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 17/286 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V ++GSF+ A +L L+Q +++RQI LE +G +LF R RG++ T + Sbjct: 7 WDLYRTFAAVLQTGSFSAAGRRLGLTQPTVARQIEALEMALGAELFVRTHRGMSATAAAA 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +L + L+TT L S+ PS G +RI +G L L +P Sbjct: 67 RLRPYADTL---LQTTA-ALVRSAAPPSAVGGTVRITAGHTVGTEALPPILAGLRRAHPQ 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L L + D+ AD A+R+ +P Q +L+ R++ T+ + YA YL P+ Sbjct: 123 LHLELSLSDTLEDLLGRKADVAVRMVEPTQ-KALVARRVNTVEIGLYAHRDYLTLRGTPV 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GS 239 L+ +LI F P A +DR S V + Q+ + G Sbjct: 182 DTPALEGFDLIGFDTETPTTRAAAVVHAWLDR-------SRFVVRTDSEAGQFAAIRSGL 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 GI + P LVR++E F ++ E+L++ +A Sbjct: 235 GIGYCQTRLAAGAPELVRVLESDFALYFGMWVAMHESLRSDPACRA 280 >gi|162662269|gb|EDQ49166.1| predicted protein [Physcomitrella patens subsp. patens] Length = 369 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 10/240 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A +GSF AAE+L L++S++ + ++ LE +G +LF R R L LTE G + Sbjct: 14 AFVASAEAGSFAQAAERLGLTRSAVGKAVARLEEHLGARLFVRTTRSLGLTEDGQMFYER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L+ + L+ + G+LRI+ + G++ + L E L+P ++I+ Sbjct: 74 CAQALEDLDAARHMLEAGRREVVGRLRISAPVVFGRHHVAPLLLELAQLHPRLRIEASFT 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D + D D AIR + S L+ R+L M A+P YL+ P S+ +L H Sbjct: 134 DRQLDFADDGIDLAIRSGELPDSDWLVARRLGMQTMVLCASPAYLQAHGAPRSVADLAGH 193 Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 I + G P WLA D + P + L + +I + G+G+A +P Sbjct: 194 RCIAYMRSGRAAPW------WLAGEDGSLAAPVLEPALGFDDIETIATATLQGAGLAHMP 247 >gi|113867216|ref|YP_725705.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113525992|emb|CAJ92337.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 295 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 146/287 (50%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA + SF A L +S S++ + ++ LE +G++LF+R R +TLT +G+ Sbjct: 9 VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEERLGVRLFHRSTRSVTLTAEGTLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V ++E ++EL E++ P G+LR+ ++ L +L+ L +F+ YPDI++ L Sbjct: 69 SRRVLAEIEAAELELAEATAAPRGRLRV--SLPLVSSLVLPVLGDFMRAYPDIELDLDFT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D +R +P S L R+L A+P YL P +L H Sbjct: 127 DQLVDVIEEGFDAVVRTGEP-ADSRLSARRLGAFQAMLVASPDYLAQRGTPKLPADLTGH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPD 246 + + P + W + R GEP ++ + N+ + + + + G GIA LPD Sbjct: 186 ACLHY--RFPHTGKLEAW--PLRRAPGEPELALPTSMICNNIETRLCFALRGLGIACLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ + +L +++ + P+ + +P + + K++A +F+ Sbjct: 242 FAIREQLADGSLCQVLAGHVGPAKAFHVLWPASRHPSPKVRALVDFL 288 >gi|13471878|ref|NP_103445.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022622|dbj|BAB49231.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 301 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 48/297 (16%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA GSFT AA+ L + + S + LE +VG++L +R R + LTE G H Sbjct: 9 IFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTEDGRAFHAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ ++ V G+LR+ ++ + + L +F+ +P++++++ Sbjct: 69 ARDLLADVDDLHSMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPELELEVSST 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188 ++ +D+ + DC +RL PI+ +LI R L + M A+P YL P S+++L + Sbjct: 129 DRQVDLVQEGFDCVLRL-GPIRDETLIARPLGLLRMVNAASPAYLARYGVPRSLEDLKRQ 187 Query: 189 -HNLITFGDLI---PKCME--DFNWLATVDRPIGEPRISCLQVNS--------------- 227 H I F ++ P E D + AT+ P L VNS Sbjct: 188 EHRTIHFSTILGARPHGWEYPDGDNYATLQLP------GALHVNSAQTYEAAALAGLGLI 241 Query: 228 ---YLSIMQYCVLGSGIALLPDY---------IVKDNPNLVR-------IMEDVITP 265 L + QY G+ + ++PD+ +V NL R +EDV+TP Sbjct: 242 QAPLLGVGQYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWIEDVLTP 298 >gi|319763770|ref|YP_004127707.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|330823966|ref|YP_004387269.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118331|gb|ADV00820.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] gi|329309338|gb|AEB83753.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 309 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 144/299 (48%), Gaps = 20/299 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +++F V +GSFT A + +Q ++++QI+ +E + ++L R+ RG++LTE G+ Sbjct: 5 DAMQMFVRVVETGSFTRVAHEFTTTQPTVTKQIAAMEARLKVRLLNRNTRGVSLTEPGTL 64 Query: 66 LHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + +++++S V G+LR+ +++ G+ ++ EF+ P +Q Sbjct: 65 YYEKCKAIVNDVADAESVVKVRQSQVH--GQLRVGSSVAFGRRVVVPLALEFMQQNPQVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L +++ D+ D A+RL K + SSL R L A+P YLK P Sbjct: 123 IDLSFEDRYTDLVASGIDVALRLGK-LADSSLGARTLGVNPWVLVASPTYLKKHGTPRRP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGS 239 +L +H + + + N L + GE P L+ N+ +++ Sbjct: 182 SDLKEHATLIYSSV------QGNDLWRLRNASGEAVSVPVTGRLRSNNLSALLAAARSHM 235 Query: 240 GIALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIA LP Y+ ++ R++E + T P ++ YP K++AF FL+ R Sbjct: 236 GIAALPWYVAHESLKAARVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQAF--IAFLQGR 292 >gi|261250590|ref|ZP_05943165.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] gi|260939159|gb|EEX95146.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] Length = 295 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L++S+S +SRQIS LE+ +G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALNVSRSHVSRQISALESRMGVSLVTRTTRSLKLTYAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++E + + + + G +RI + LG++++ + +F+ + DI +++ Sbjct: 70 KQCESALMQVEQALLAAVDDTEQVQGHIRINSVGGPLGEDVVANYVGQFMRQHQDITVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D A R+ K ++ ++ I R L I M A+P YL EP ++L Sbjct: 130 DFSSPRIDLIEDQFDIAFRMGK-LEDANFIGRHLSDIEMVTLASPDYLAIYGEPEHPKQL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H ++ + +++ D E +S L + +++ + G+GI +P Sbjct: 189 LEHRILR------GSVTRWSYQHQADESRYEVSVSAHLVCKNGRALVAGALQGNGIIRVP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +LV IM D S Y Y +LKAF +F+ Sbjct: 243 AMYCMGEIEQGSLVPIMSDWKVESVPFYAIYHRDKYQPKRLKAFIDFM 290 >gi|188581364|ref|YP_001924809.1| LysR family transcriptional regulator [Methylobacterium populi BJ001] gi|179344862|gb|ACB80274.1| transcriptional regulator, LysR family [Methylobacterium populi BJ001] Length = 313 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 26/300 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF VVA + SF AAE+L LS++++S+ ++ LET +G +LF+R +R L LTE G Sbjct: 6 DFEAWAVFAVVADALSFARAAEELGLSKATVSKAVARLETRLGARLFHRTSRRLALTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + +++ P G++R+A + G L L EFL + ++ Sbjct: 66 RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHLAPVLPEFLAAHREVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D +R+ + SSL R+L + A P YL+ P Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERYGAPQHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233 ++L C+ + +L T DR GE P L+ N+ ++ Sbjct: 185 EDLKSR----------ACL-GYAYLPTPDRWPFTNAAGETVAIIPE-GPLRANNADALAP 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A+ PD+ + ++ L R+M D P + P L ++ A F+ Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292 >gi|117918705|ref|YP_867897.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117611037|gb|ABK46491.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 305 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 16/289 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SFT A+ L LS++ +S ++ ET +G +L R R + LT+ G + Sbjct: 8 MQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCY 67 Query: 68 RVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + Y +LE+ +LQ + + SG+LR+ + + +NL+ +L +F+ YP I++ Sbjct: 68 ERCKNLLTDYQELESL-FQLQATQI--SGRLRVDMSTGIARNLVLPHLPDFIEQYPQIEL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L ++ +DI + DC IR+ +Q +I +K+ M +P Y+ P +I+ Sbjct: 125 ELSSTDRKVDIVAEGFDCVIRV-GSVQQEGVIAKKIGHFKMLNCVSPSYITKYGRPSNIE 183 Query: 185 ELD-KHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL H LI + + F +L+ + + P++ + VN+ + C+ G G Sbjct: 184 ELSHGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKL--ITVNNADAYSAACLAGLG 241 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I P+ V L+ I+ D PS V YP + +L+ F Sbjct: 242 IIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVF 290 >gi|332534279|ref|ZP_08410123.1| transcriptional regulator, LysR family, in formaldehyde detoxification operon [Pseudoalteromonas haloplanktis ANT/505] gi|332036275|gb|EGI72747.1| transcriptional regulator, LysR family, in formaldehyde detoxification operon [Pseudoalteromonas haloplanktis ANT/505] Length = 317 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 131/275 (47%), Gaps = 15/275 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F V GSFT AA+ L LS + ISR ++ LE + +L R R + LT++G Sbjct: 31 WDGIDEFIAVGEEGSFTAAAKMLGLSVAHISRHVTALEQRLNTQLLTRTTRKVVLTKEGE 90 Query: 65 -KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 LH++ + E TQ Q+ S P GK+++ + G++ + + F+ P+++ Sbjct: 91 VYLHQIKHLQHAMDEATQGLAQQQST-PKGKIKLTAPVMYGESFIMPIVHNFMKDQPEVE 149 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L N+ ++ D AIRL ++ SSL R+L AAP YL EP ++ Sbjct: 150 VVATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSARRFIMCAAPQYLTRFGEPHTL 208 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL+ H + + E+ D+ I +I+ LQ NS +++ G GI Sbjct: 209 GELNSHECLIGNSSYWRVNENGR-----DKHI---KIAGRLQCNSGWALVDGAKKGLGIV 260 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274 LPDY +++ N LV I+ V+ YP Sbjct: 261 QLPDYYIENEINSGQLVPILTPYQPQQEGVWGVYP 295 >gi|241207292|ref|YP_002978388.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861182|gb|ACS58849.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 296 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 15/299 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+ + L +F SGSFT AA L + +S++S++++ LE +G++L R +R LTE Sbjct: 4 FNLNDLHLFVQAVDSGSFTAAARHLGIPKSTVSKRVAELERRLGVRLIQRTSRSFALTEL 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + E + ++ +P+G +R+ ++ Q L +L YP + Sbjct: 64 GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123 Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ + + ++ +DI + D A+R R P+ S+L+QRKL + A+P Y+ EP Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRGPLPDSALVQRKLASHPFFILASPDYVGAHGEPR 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240 +EL +H I + ED W R+ S + + +M+ + G G Sbjct: 184 RPEELAEHATI-----MTSLTED-QWRLYSGGDEALVRLHSVMAADEPYVLMEMAMSGLG 237 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKAR 295 I LP + + + LVR++ + S P G+L A R + FL R Sbjct: 238 ITCLPTSVCRKALADGRLVRVLPEWTAGSIETTILMPH---RRGQLPAVRAVVDFLAER 293 >gi|153837786|ref|ZP_01990453.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|149748807|gb|EDM59646.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] Length = 298 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + + G +R+ +G++++ + EF+ YP + I L Sbjct: 70 HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPSVSIDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D A R+ + + + + RKL+T+ M A+P Y++ P +EL Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPKHPKEL 188 Query: 187 DKHNLIT 193 +H +T Sbjct: 189 AEHRTLT 195 >gi|270265357|ref|ZP_06193618.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270040761|gb|EFA13864.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 299 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 18/295 (6%) Query: 1 MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+ D D +R+F V SFT AA+ ++L +S+++ I LE + ++L R R ++ Sbjct: 1 MTMDRIDAMRLFTRVVEQRSFTQAAQDMNLPRSTVTDAIKQLEARLQVRLLQRTTRHVSP 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G ++ + +E E+ + KP G LRI L ++ L L +FL Y Sbjct: 61 TLDGEAYYQRCLIILADIEDA--EMAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQY 118 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PDI+ + ++ +D + DC +R+ K ++ S + R+L + AAP YL+ Sbjct: 119 PDIEFYMSEGDRLVDPVREGIDCVVRVGK-LKDSDMAARRLGELEEITCAAPEYLRRFGT 177 Query: 180 PLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 PLSI +L H ++ F G ++P +FN + + + + P S + V++ S++ Sbjct: 178 PLSIDQLQGHRMVGFRSSATGAVMPL---EFN-VNGLPQQVTLP--STVSVSAAESLVAA 231 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +G GI +P Y + D N +L+ ++ + V YP + + +++ F Sbjct: 232 ARMGLGIIQVPRYHLLDDLTNGSLLPLLPQCPSTPMPVSLLYPRNRQLSPRVRVF 286 >gi|229589137|ref|YP_002871256.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361003|emb|CAY47865.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 298 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 23/291 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F + A GS+ AAE+L+LS +++ +S LE +G +L R R +LTE GS + Sbjct: 8 MSAFVMAAELGSYARAAERLNLSPQMVAKHVSALEQRLGARLLNRTTRRQSLTELGSAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + E Q + P GKL+I + G L + EFL P+++I L Sbjct: 68 ERCKHILTEAEAADSLAQIMNDTPRGKLKITAPVTFGSYSLMPLITEFLRDNPEVEIDLH 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + + A R+ P+ ++SL R L + A+P YL P +L Sbjct: 128 LTDRFVDLVDEGYEAAFRI-GPLATNSLTARPLAPYRLVVCASPAYLAARGTPQVPADLM 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR---------PIGEPRISCLQVNSYLSIMQYCVLG 238 H +C+ W DR P S LQ+N ++M + G Sbjct: 187 HH----------ECLGYAFWSRPADREWVLYQGPTPYRVQVASRLQINESRALMSAALEG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI L P+ ++ LV+++ + PS ++ Y + T KL+ F Sbjct: 237 FGIVLGPEDFLRPALLRGELVQVLANFEAPSRPMHLLYTANRQRTAKLRRF 287 >gi|152969866|ref|YP_001334975.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954715|gb|ABR76745.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 294 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 13/264 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+ + L+ L PSG +RI + +L L F YPDI+ Sbjct: 66 EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI D +RL + S + R + M P + + P + Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H I FGD + W VD + P+ +SY+ + LG Sbjct: 186 ADLVAHPCIAYQFGD-----GSLYAWELNVDGKKITHPPQGQWAFADSYME-AKAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIME 260 G+A +P+ ++ D+ L+R+++ Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQ 263 >gi|226943087|ref|YP_002798160.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226718014|gb|ACO77185.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 304 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF V R F AAE+L LS + +S++I LE+ + +L +R R + LTE G + Sbjct: 12 EDLRVFLTVIRKQGFAAAAEELGLSPAYVSKRIHILESTLKARLLHRTTRRIALTEDGER 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R + L+ EL ++ P G L I++T G+N + + YP+++I+ Sbjct: 72 AQRWAVRILGDLDDLFDELSQARQTPRGLLHISSTFGFGRNHVAPAISLLAERYPELEIR 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +DI + D IR+ + + +R LV+ A P YL P S+ + Sbjct: 132 LEVFDRVVDIVGEGFDLEIRVGDDLPGQHICKR-LVSNKRVLCATPGYLARRGTPASLDD 190 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L H+ + ++ + F W + + R+S L N+ ++++ + G GI L Sbjct: 191 LQHHDCL----VLKERNNPFGIWHLSRNGKPASVRVSGPLSSNNGEIVLEWALHGRGILL 246 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + VK + LV+++ D + S V+ YP L N+ KL+ F+ Sbjct: 247 RSLWDVKPLLEQGRLVQVLHDY-SQSANVWAVYPTRLSNSAKLRVCVEFL 295 >gi|229526285|ref|ZP_04415689.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis VL426] gi|229336443|gb|EEO01461.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis VL426] Length = 295 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 17/280 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I++QLI + R + + S S L YA+P YL P Sbjct: 121 IRVQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVPQ 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 ++QEL +HN++ +G+ + F + T R++ + ++ G Sbjct: 181 TLQELTEHNVLCWGE------QTFREIKTAQ----GKRLTLTGNFATTNPEALFYAGKAG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 GI + ++K+ NLVR++ DV TVY YP+ Sbjct: 231 MGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270 >gi|237729981|ref|ZP_04560462.1| transcriptional activator TtdR [Citrobacter sp. 30_2] gi|226908587|gb|EEH94505.1| transcriptional activator TtdR [Citrobacter sp. 30_2] Length = 313 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE+ +G L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILESTLGTTLLSRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + P+G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHAQAILAGYQHLVDDVTQLKTCPAGMIRIGCSFGFGRSYIAPAITELMHSYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID++ D D IR+ I I L AAP YL+ EP+++QEL Sbjct: 131 LYDRQIDLAQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPPYLQKYGEPMTLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + +++ L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGVWELDNGQEKKSVKVAGHLSSNSGEIVLQWALQGKGIMLRSE 246 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+ + LVR++ D S ++ Y E L + KL+ F+ Sbjct: 247 WDVQPFLASGELVRVLPDY-AQSANIWAVYQEPLYRSVKLRVCVEFL 292 >gi|332289113|ref|YP_004419965.1| putative DNA-binding transcriptional regulator [Gallibacterium anatis UMN179] gi|330432009|gb|AEC17068.1| putative DNA-binding transcriptional regulator [Gallibacterium anatis UMN179] Length = 295 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 12/291 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++LR F +VA++GSFT AA +L +S S++S + LE ++ IKLF+R R + TE G Sbjct: 4 NMNELRSFIIVAQTGSFTKAAGRLGVSTSALSHSMRKLEEQLKIKLFHRTTRSVATTEAG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++ +E L +G LRI + ++ L F+ YP+++ Sbjct: 64 EQLFKQLFPLFESIEDNVNALSHFRNTLNGTLRINGADHVFLYVIWDKLLRFMEKYPEVK 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI D K DI D IRL K + + R + M A P YL+ P +I Sbjct: 124 LELISDMKFTDIVAGRFDAGIRLGKEVDKDMIAIRISDDMQMALIATPQYLEQYGIPKTI 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----VNSYLSIMQYCVLG 238 +L H + +P F W + P G+ + + VN+ + C+ Sbjct: 184 DDLTSHQCLCVR--MPTSEGIFPWEFCM--PKGKEVVKFMPSGRFVVNNNFLAKKACLSH 239 Query: 239 SGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+AL+P D ++K+ + +V ++++ Y YP +++ KA Sbjct: 240 LGLALMPKDRVLKELKSGEIVEVLQNYAMRYEGYYLYYPNRRQDSPLFKAL 290 >gi|302061339|ref|ZP_07252880.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] Length = 299 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF +A GSFT AE + + + ++R I LE + ++LF R R + LT +G + + Sbjct: 1 MQVFAKLAELGSFTWVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 RV S + ETT + + S G+LRI + Q L+ F +PDI + L Sbjct: 61 ERVKSNLADLAETTSMFDRNGSTL-RGRLRIDIPVAFSQRSFMETLRGFTRAFPDIDVVL 119 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ + DCA+R+ + + SSL+ R + M AAP YL+ P ++++L Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLEDL 178 Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H ++F L + W L D P P + VN + +Q + G GI Sbjct: 179 KRHCGVSF--LSGQNNRPLPWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGILQ 234 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P V+ + LV ++E V YP +++AF ++ Sbjct: 235 APGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAFVEWL 284 >gi|261391824|emb|CAX49281.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] gi|308388509|gb|ADO30829.1| probable LysR-family transcriptional regulator [Neisseria meningitidis alpha710] gi|325137116|gb|EGC59712.1| transcriptional regulator, LysR family [Neisseria meningitidis M0579] gi|325141515|gb|EGC63985.1| transcriptional regulator, LysR family [Neisseria meningitidis 961-5945] Length = 303 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAAGALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|182677784|ref|YP_001831930.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633667|gb|ACB94441.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 314 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 149/301 (49%), Gaps = 17/301 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+ + VF + +GS + AA +L LS + +SR+++ LE +G++L R R L T Sbjct: 10 MGHDFLDMLVFVRIIEAGSLSGAARELDLSLAVVSRRLARLEERLGVRLINRTTRTLAPT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G+ H + + L+ + E+ + +G LR+ + + GQ L L +F L+P Sbjct: 70 EEGAAFHARCARILADLDEAEQEVTQGRDVATGLLRLTSPVAFGQRWLAPLLHDFQALHP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +QI L + +++ D AIRL + SSLI R++ + AAP YL P Sbjct: 130 RLQIYLDASDTVMNLVESGYDLAIRL-GGLSDSSLIARQIAPDYRVICAAPSYLARRGRP 188 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 +I++L +H+ I G M+ +W R I ++ +++ ++ Q + + G+ Sbjct: 189 HTIEDLAQHDCIIHGR---PPMD--HWTFADGRTI---KVRGTLASNHGALAQSWALQGA 240 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFIFLKA 294 G+ L + V+D+ R+ +++ P+F ++ YP + +++ +++ + Sbjct: 241 GLVLKSMWDVRDDVIAGRL--EIVLPNFPLPMTPIHAVYPHSRYAAARVRLCVDYLIERL 298 Query: 295 R 295 R Sbjct: 299 R 299 >gi|118592916|ref|ZP_01550304.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] gi|118434450|gb|EAV41103.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] Length = 299 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 23/306 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ + LRVF V GS T L L+ + S++I LE +G++LF R R LT T Sbjct: 1 MSY-LESLRVFTRVVELGSITSGGRDLRLTPAVASKRIKELEKHLGVRLFNRTTRSLTPT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + +E + + S P G +R+ + +G+ ++ + F+ +P Sbjct: 60 EVGKVFYDYAVKALESIEDAEAAVASFSDTPRGVIRVTAPLGVGRRIIAPLVPRFVEKFP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L ++ +DI D D A + P Q S+L RK+ AAP YL+ P Sbjct: 120 ATEVHMRLSDRKVDILSDGLDVAFFIGTP-QDSNLKLRKISDCPRVLCAAPEYLEKHGTP 178 Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IM 232 + +L D+HN + P+ E + W+ + P G PR LQV+ + + Sbjct: 179 RTPDDLLSDEHNCLLL--RYPRSPE-YYWV--LQTPAG-PR--KLQVSGKMDADHGDVLT 230 Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRN 288 + + G GI P + V D+ LV I++D P T++ C YP K++ F + Sbjct: 231 DWALSGYGIVNKPRFDVAQHLDSGRLVEILKDTPPPP-TIFGCLYPHRRLQDPKIRHFVD 289 Query: 289 FIFLKA 294 F+ A Sbjct: 290 FVISNA 295 >gi|121727008|ref|ZP_01680204.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|147672172|ref|YP_001214899.1| LysR family transcriptional regulator [Vibrio cholerae O395] gi|262169006|ref|ZP_06036700.1| transcriptional regulator [Vibrio cholerae RC27] gi|121630642|gb|EAX63031.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|146314555|gb|ABQ19095.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|227014713|gb|ACP10922.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|262022705|gb|EEY41412.1| transcriptional regulator [Vibrio cholerae RC27] Length = 295 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 17/280 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I++QLI + R + + S S L YA+P YL P Sbjct: 121 IRVQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVPQ 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 ++QEL +HN++ +G+ + F + T R++ + ++ G Sbjct: 181 TLQELTEHNVLCWGE------QTFREVKTAQ----GKRLTLTGNFATTNPEALFYAGKAG 230 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 GI + ++K+ NLVR++ DV TVY YP+ Sbjct: 231 MGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270 >gi|296159860|ref|ZP_06842681.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295889843|gb|EFG69640.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 297 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 147/302 (48%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AA+ L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 8 NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E +I L+ + + L++ T + + + F YP++ +Q Sbjct: 68 LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQAEYPELHVQ 122 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D ++ D AI +Q+ SL + +L + AP LK+ +P Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGADVQAVSLFEERLTPV-----CAPDLLKD--KP 175 Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLATV------DRPIGE----PRISCLQVNSY 228 L+ + +L +H L+ + D+ WLA V + P+ + P L + + Sbjct: 176 LAELADLARHTLLH----PTRDHRDWKMWLAKVTEVDAANAPVIDAEHGPSFDTLDMATN 231 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 ++ + V S +AL+ + + LVR + V+ + YF YP+++ + KL FR+ Sbjct: 232 AALQGFGVAISDLALIDEDVAAK--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLNLFRD 289 Query: 289 FI 290 +I Sbjct: 290 WI 291 >gi|289675293|ref|ZP_06496183.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae FF5] Length = 264 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 11/262 (4%) Query: 32 SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91 + +SRQI LE + +L YR R + LTE G + E + + + +P Sbjct: 1 AHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQTFLHHCQRLQDGREEALRAVGDLASEP 60 Query: 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151 G LR+ + G+ + + F+ LYP +++ + L N+ +D+ + D AIRL + +Q Sbjct: 61 KGLLRMTCAVAYGERFITPLVTRFMDLYPHLRVDIELSNETLDLVHEGMDLAIRLGR-LQ 119 Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211 S L+ +L M+ A+P Y++ P S+ EL++HN + G D L Sbjct: 120 DSRLVATRLAPRQMYLCASPSYIERYGRPHSLSELNRHNCLIGGS-------DTWQLQQN 172 Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFT 268 R + + NS +++ + G G+ LPDY V+ + N LV ++E P+ Sbjct: 173 GREFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTA 232 Query: 269 VYFCYPEALKNTGKLKAFRNFI 290 V+ YP+ + K++ +++ Sbjct: 233 VWGLYPQQRHLSPKVRKLVDYL 254 >gi|194289863|ref|YP_002005770.1| lysr family transcription regulator [Cupriavidus taiwanensis LMG 19424] gi|193223698|emb|CAQ69705.1| putative TRANSCRIPTION REGULATOR; LysR family [Cupriavidus taiwanensis LMG 19424] Length = 338 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 6/272 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R ++LT +GS Sbjct: 28 QLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKISLTFEGSAF 87 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + F+ +PD+ I L Sbjct: 88 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPDVSITL 147 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L AAP YL P + ++L Sbjct: 148 DLSDRVVDLVNEGFDCAIRL-GDLPDSSLVSIRLAETRRVVVAAPEYLARAGRPQAPEDL 206 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN + FG M+ R + ++ + + ++C+ G+G+A Sbjct: 207 QRHNCLAFG--ASANMQRGWVFQEEGRAVTVKVGGTMECSDGAVLHEWCLQGNGLAWRSW 264 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 + V + LV ++++ P ++ +P+ Sbjct: 265 WEVGSEIASGRLVTVLDEFQAPPIGIHAVFPQ 296 >gi|49084644|gb|AAT51219.1| PA0123 [synthetic construct] Length = 303 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 26/290 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GS AA+ L ++ S++S+QI LE+ + L +R R LTLTE G + Sbjct: 7 MAIFATVVDKGSMAAAAQSLGMTPSTVSQQIRKLESRAQVTLLHRATRRLTLTEAGEAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R +++ E + L E P G+LR+A + L+ LK L + +++QL Sbjct: 67 RSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQLRLQLF 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184 ++ ID+ + D AIR+ + SSL+ R L AAP YL+ P + Sbjct: 127 FQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPINRPEQLT 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVL 237 E+D +L T L N L T+ P G EPR++ N L++ Q+ + Sbjct: 186 EVDWISLNTSNHL--------NHL-TLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLD 233 Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G G++ P V+D N L +++ + P +Y P K+K Sbjct: 234 GLGVSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVK 283 >gi|77465303|ref|YP_354806.1| LysR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|221369311|ref|YP_002520407.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] gi|332560909|ref|ZP_08415227.1| Transcriptional regulator, LysR family protein [Rhodobacter sphaeroides WS8N] gi|77389721|gb|ABA80905.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides 2.4.1] gi|221162363|gb|ACM03334.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] gi|332274707|gb|EGJ20023.1| Transcriptional regulator, LysR family protein [Rhodobacter sphaeroides WS8N] Length = 313 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 12/261 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +F WD L+ F VARSG + AA QL S ++SR+I LE + ++LF R+ RG LT Sbjct: 3 NFTWDDLQFFLAVARSGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + + E Q+EL G LR+A G + L F +P+ Sbjct: 63 VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTERFPN 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++LI + + +S AD + L P ++S+ +++ +H YAA YL E Sbjct: 123 IALELITLPQIMSLSRREADLTVTL-DPPKASTYHSERIMDYTLHIYAAKSYLAQRPEIQ 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLG 238 + +L KH I + +E+ + +D +GE P I + +S + + G Sbjct: 182 TRDDLLKHPFIGY-------IEEMIFAPGLDY-LGEVHPGIRANFKSSSIFNQLAATQNG 233 Query: 239 SGIALLPDYIVKDNPNLVRIM 259 G+ +LP YI + P+L I+ Sbjct: 234 LGLCVLPFYIGRRVPDLEMIL 254 >gi|194437133|ref|ZP_03069232.1| LysR substrate binding domain protein [Escherichia coli 101-1] gi|194424116|gb|EDX40104.1| LysR substrate binding domain protein [Escherichia coli 101-1] Length = 290 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + +K+ L+R++ D TP Y Y ++ G AF F Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLF 289 >gi|103486199|ref|YP_615760.1| LysR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976276|gb|ABF52427.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis RB2256] Length = 293 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 8/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +DW+ L+ F VA +GS AA+ + +SQ++++R+I+ LE G+ LF R G LT Sbjct: 2 YDWNDLKAFLAVAETGSTLAAAQAMRVSQTTVARRIAALEAATGVTLFERRQAGYALTPV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V + S G + + + +L L++ +P I Sbjct: 62 GEAMLASAVAVRDAADRFGEAASARSRDAGGTVSLTVMEIIAVTILPPILRDLRAEHPAI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL ++ D++ AD AIR K + L+ R++ Y + Y P + Sbjct: 122 HIQLDTSDEARDLAAGAADIAIRSSKQPSGAGLVGRRIADNAWTVYCSCDYADRHGVPHT 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL KH I G + E + WL R G +Q ++ ++ G G+ Sbjct: 182 REELAKHPFIGGGGGV---WEPYRAWL----RQYGLEESVVMQYDTATGLLSGVRAGMGL 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++LP Y+ P+L+R + + ++ E L++ +++ +F+ Sbjct: 235 SVLPAYLADREPDLIRCLPPRSDDTTGLWLLTHERLRHVPRVRLVLDFL 283 >gi|254193704|ref|ZP_04900136.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|169650455|gb|EDS83148.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] Length = 313 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 126/296 (42%), Gaps = 25/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLAEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID +S D D AIR P +L L + A AAP YL R P Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYLD--RHPPRAT 185 Query: 185 ELDKHNLITFGDL-----IPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +++ D P+ +E WL A V G PR + N + V G Sbjct: 186 AKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGP--EFNLASLAIAAAVAG 243 Query: 239 SGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ + +V D R++ V P+ C A ++KAF ++ Sbjct: 244 QGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAIC---ARPEDARVKAFVGWL 296 >gi|126464767|ref|YP_001045880.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126106578|gb|ABN79108.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17029] Length = 313 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 12/261 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +F WD L+ F VARSG + AA QL S ++SR+I LE + ++LF R+ RG LT Sbjct: 3 NFTWDDLQFFLAVARSGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + + E Q+EL G LR+A G + L F +P+ Sbjct: 63 VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTERFPN 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++LI + + +S AD + L P ++S+ +++ +H YAA YL E Sbjct: 123 IALELITLPQIMSLSRREADLTVTL-DPPKASTYHSERIMDYTLHIYAAKSYLAQRPEIQ 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLG 238 + +L KH I + +E+ + +D +GE P I + +S + + G Sbjct: 182 TRDDLLKHPFIGY-------IEEMIFAPGLDY-LGEVHPGIRANFKSSSIFNQLAATQNG 233 Query: 239 SGIALLPDYIVKDNPNLVRIM 259 G+ +LP YI + P+L I+ Sbjct: 234 LGLCVLPFYIGRRVPDLEMIL 254 >gi|15600853|ref|NP_232483.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121590638|ref|ZP_01677973.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|153212872|ref|ZP_01948489.1| transcriptional regulator, LysR family [Vibrio cholerae 1587] gi|153801237|ref|ZP_01955823.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] gi|153819229|ref|ZP_01971896.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|153823631|ref|ZP_01976298.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|153825761|ref|ZP_01978428.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] gi|153829005|ref|ZP_01981672.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] gi|227811708|ref|YP_002811718.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|229510460|ref|ZP_04399940.1| transcriptional regulator LysR family [Vibrio cholerae B33] gi|229517409|ref|ZP_04406854.1| transcriptional regulator LysR family [Vibrio cholerae RC9] gi|229522754|ref|ZP_04412170.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80] gi|229527933|ref|ZP_04417324.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)] gi|229605219|ref|YP_002875923.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236] gi|254284806|ref|ZP_04959773.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|254850346|ref|ZP_05239696.1| transcriptional regulator [Vibrio cholerae MO10] gi|255746094|ref|ZP_05420041.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|298499945|ref|ZP_07009751.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9657467|gb|AAF95996.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547531|gb|EAX57636.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|124116250|gb|EAY35070.1| transcriptional regulator, LysR family [Vibrio cholerae 1587] gi|124123255|gb|EAY41998.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] gi|126510221|gb|EAZ72815.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|126518851|gb|EAZ76074.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|148875536|gb|EDL73671.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] gi|149740600|gb|EDM54711.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] gi|150425591|gb|EDN17367.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|227010850|gb|ACP07061.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|229334295|gb|EEN99780.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)] gi|229340739|gb|EEO05745.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80] gi|229345445|gb|EEO10418.1| transcriptional regulator LysR family [Vibrio cholerae RC9] gi|229352905|gb|EEO17845.1| transcriptional regulator LysR family [Vibrio cholerae B33] gi|229371705|gb|ACQ62127.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236] gi|254846051|gb|EET24465.1| transcriptional regulator [Vibrio cholerae MO10] gi|255735848|gb|EET91246.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|297541926|gb|EFH77977.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|327485313|gb|AEA79719.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4] Length = 295 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 19/281 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++QLI + + D I R + + S S L YA+P YL P Sbjct: 121 IRVQLITTTPG-QLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 ++QEL +HN++ +G+ + F + T R++ + ++ Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQ----GKRLTLTGNFATTNPEALFYAGKA 229 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G GI + ++K+ NLVR++ DV TVY YP+ Sbjct: 230 GMGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270 >gi|329115110|ref|ZP_08243865.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter pomorum DM001] gi|326695553|gb|EGE47239.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter pomorum DM001] Length = 323 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 16/294 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D R+F V + SFTHAAE L + +SS+S + LE+ VG +L R R + T G+ Sbjct: 21 DLFRIFARVVEAASFTHAAETLGMPRSSVSAAVQQLESRVGARLLTRTTRSVAPTPDGAA 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + ++S G LR+ +G+ ++ L +FL YP + ++ Sbjct: 81 FYEHCLRLVADVEEAENLFRQSESAVQGVLRVNMPGRIGRLIVAPALPDFLATYPGLSVE 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +K +++ + DC +R+ P+Q S LI R++ + + A+P YL P + Sbjct: 141 LGVTDKAVNLVEEGLDCVLRV-GPLQDSGLIARRMGELKLINVASPAYLHQHGVPQCPAD 199 Query: 186 -LDKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H + + +E + W T+D P + VNS +++ + G Sbjct: 200 LLHGHEAVNYASPQNGRVEQWEWEENGLTHTLDIP------GRVTVNSAEALIACALAGL 253 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +P Y V+ LV+++ + YP + +++ F ++ Sbjct: 254 GMIQIPAYDVRSYLHTGQLVKVLPKWCAAPLPMALLYPHRRHLSMRVQVFAAWL 307 >gi|325168818|ref|YP_004280608.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064541|gb|ADY68230.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 293 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 14/289 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ ++ F VA G T AA +L L +S +SR++ LE+E+G++L R RG +LTE G+ Sbjct: 4 FEDMQTFVEVADGGGITVAARRLGLPKSIVSRRLVRLESELGVQLLARTTRGASLTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + E+ + + G+LR+A G L E +P +Q+ Sbjct: 64 SFREHAARMCLEMEVAREEIAPTG-ELRGRLRVAVPSSFGPRHFAPALAELARQHPLLQL 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +D+ + DC IR+ +Q S+L RK+ +A P YL+ P Sbjct: 123 HAHYSDRYVDLVAEGFDCGIRVGY-LQDSNLTARKIGAFAAGLFANPEYLRKHGVPRKPS 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G +W ++ R I + +S L I + G GIA Sbjct: 182 DLLDHQAILQGTE--------SWKVSDGSRTIVINAQGRFKADSALGIAEGTAAGLGIAA 233 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LP I + LV IM D P VY P + K++ +F Sbjct: 234 LPVVIAESYVAAGTLVPIMSDYGLPEIGVYIVRPPGSHVSRKVRVLIDF 282 >gi|229514589|ref|ZP_04404050.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21] gi|229348569|gb|EEO13527.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21] Length = 295 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 19/281 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++QLI + + D I R + + S S L YA+P YL P Sbjct: 121 IRVQLITTTPG-QLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 ++QEL +HN++ +G+ + F + T R++ + ++ Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQ----GKRLTLTGNFATTNPEALFYAGKA 229 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G GI + ++K+ NLVR++ DV TVY YP+ Sbjct: 230 GMGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270 >gi|206558590|ref|YP_002229350.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198034627|emb|CAR50494.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 307 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 139/294 (47%), Gaps = 14/294 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + + + L +F +GS + AA +L L +S++S++++ LE +G +L +R +R LT Sbjct: 4 LEVNLNDLYLFVQAVDAGSMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 63 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G++ + ++ + + + +P+G +RI +++ + Q++L L + +P Sbjct: 64 PVGAEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAIAHP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 + +Q+ ++ +DI+ + D A+R P+ S+L+QR L + AAP YL Sbjct: 124 KLLLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 183 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P + +L +H+ + G P+ VD PR+ LQ + ++Q G Sbjct: 184 PDTPADLAQHDGLHPG---PQPWRLQRGGDAVDV---TPRLR-LQADESTLLLQAATAGL 236 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A LPD+I + LVR++ + T P G+L R + Sbjct: 237 GLACLPDWIAGAALASGTLVRVLPGWCAGTVTTTLLMPH---RRGQLPGVRAAV 287 >gi|261346255|ref|ZP_05973899.1| transcriptional regulator, LysR family [Providencia rustigianii DSM 4541] gi|282565563|gb|EFB71098.1| transcriptional regulator, LysR family [Providencia rustigianii DSM 4541] Length = 304 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 143/286 (50%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF + GS + AA++L +S++ ++R ++ +E G++L R R L+LT G ++ Sbjct: 7 VQVFITIVEQGSLSGAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTSAGESVY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ T ++ + ++ +G +RI+ + + Q+ L + EFL LYP++ I + Sbjct: 67 QQSLQLNAISLTLPVQQKHNTKDLAGLVRISCSQSIAQSALSLAISEFLQLYPNMMIDMQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + NK +++ + D AIR+ ++ SLI + L T H A+P +LKN P ++L Sbjct: 127 ISNKSVNLIEERIDLAIRITNQLE-PSLIAKPLSTCHSVICASPAFLKNKTLPTQPEDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +T+ + + F + + R+S N + +M+ + G+GIA+ P Y Sbjct: 186 LLECLTY-SFFGRSLWSFEKEGKTSTVLVDGRLSA---NESVFLMEAALNGAGIAMQPYY 241 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V + L++++ D +Y Y L+A +F+ Sbjct: 242 SVAKYLQSGELIQLLPDYTPMPLGIYGVYTSRQHMPTPLRAVIDFL 287 >gi|110807105|ref|YP_690625.1| putative DNA-binding transcriptional regulator [Shigella flexneri 5 str. 8401] gi|110616653|gb|ABF05320.1| quorum sensing Escherichia coli regulator A [Shigella flexneri 5 str. 8401] gi|281602621|gb|ADA75605.1| Quorum sensing regulator A [Shigella flexneri 2002017] gi|313648514|gb|EFS12956.1| HTH-type transcriptional activator aaeR [Shigella flexneri 2a str. 2457T] gi|332752406|gb|EGJ82796.1| HTH-type transcriptional activator aaeR [Shigella flexneri 4343-70] gi|332765243|gb|EGJ95470.1| quorum sensing transcriptional regulator of LYSR-type [Shigella flexneri 2930-71] gi|332998364|gb|EGK17963.1| HTH-type transcriptional activator aaeR [Shigella flexneri VA-6] Length = 309 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSANL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240 >gi|33596478|ref|NP_884121.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33602227|ref|NP_889787.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33566247|emb|CAE37158.1| probable LysR-family transcriptional regulator [Bordetella parapertussis] gi|33576666|emb|CAE33743.1| probable LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 303 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 14/272 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GS + AA L +S++ +SR ++ LE VG++L +R R L+LT GS+ Sbjct: 7 MQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVGVRLLHRTTRRLSLTPAGSETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +P G LR+ + G L + EF+ +P I L+ Sbjct: 67 PRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGGAQLAEAVAEFVRRHPAASIDLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D A+R+ + +LI R+L AAP YL+ P ++L Sbjct: 127 LVDRAVNLVEERVDLAVRITNDLD-PNLIGRRLADCRSVVCAAPQYLQQHGAPARAEDLS 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 HN +T FG + + F P+ P + N +M+ + G+GI +L Sbjct: 186 LHNCLTHSYFG----RSLWRFE---RAGEPVEVPVGGNITANETDVLMRAALAGAGIVML 238 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 P Y+ L ++ D P ++ Y Sbjct: 239 PTYLAAGQIAAGTLRPLLPDCAPPVLGIHGVY 270 >gi|148547184|ref|YP_001267286.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148511242|gb|ABQ78102.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 313 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 143/295 (48%), Gaps = 12/295 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V +GSFT AA++L +S+ S+SR++ LE +G++L R R L T G Sbjct: 23 YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 82 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +++ + ++ + G LR++ + L L EFL L+P + + Sbjct: 83 HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 142 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ SSLI R++ ++ A+P YL+ P Sbjct: 143 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIASVERVYCASPAYLQARGAPGKPD 201 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL H+ + +G W +++ ++ N+ + + G G+ Sbjct: 202 ELAAHDCLPYGH-----SRQVQWQFHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTY 256 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP +IV LV ++++ P+ + YP+ + ++ F + FL+AR Sbjct: 257 LPTFIVGQALAEGQLVTVLDEWRPPALQLSAVYPQHRQVARPVQGFVS--FLRAR 309 >gi|325202883|gb|ADY98337.1| transcriptional regulator, LysR family [Neisseria meningitidis M01-240149] Length = 303 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 1/181 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLIRNGVPKTPEEVT 185 Query: 188 K 188 + Sbjct: 186 R 186 >gi|187920867|ref|YP_001889899.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719305|gb|ACD20528.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 334 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 11/273 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DW +RVF +AR G+ AA QL +Q ++ R++ LE VG LF R A G LT Sbjct: 48 MTMDWGDVRVFLAIARCGTLGAAARQLGQTQPTMGRRLRALENAVGQMLFQRTAEGFVLT 107 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + + + L ++ + +G LR++++ G ++L FL +P Sbjct: 108 DEGQAVLSFAERMEEEALAFTRSLAGTTQQLTGSLRVSSSDWFGIHVLTPVFATFLSRHP 167 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+LI D++ +S AD R+ P +IQRK++ ++ Y + Sbjct: 168 LLSIELITDSRRYSLSRREADLVFRI-TPFDEPDVIQRKIMDMNYALYGHADLVVP---- 222 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +LIT D + + D W + R + R++ N + + C G G Sbjct: 223 -QAGDGAGQSLITM-DSAFEALPDVTW---IRRMLPHARVAYASNNRGVQ-ARMCAEGGG 276 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273 A+LP + + P L RI P V+ Y Sbjct: 277 FAVLPCALGDNTPGLRRIDLGEKPPGREVWLGY 309 >gi|91224599|ref|ZP_01259860.1| transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] gi|91190487|gb|EAS76755.1| transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] Length = 300 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA + L++S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 5 DDYIIFYHLIEQGSFSAAARHMSLTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 VY + T + + SG ++I+ G+ +L + EF YPDI I Sbjct: 65 FFTHAKAVYQAVATAEESIVGLGKNLSGHIKISVPTISGELILPQVINEFNQKYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI + D AIR + SSLI RKLV + A+P YL P Q Sbjct: 125 MDLDNRFVDIVNERFDLAIR-TGVLPDSSLIARKLVDANWIICASPQYLAKHGIPKQPQA 183 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L KHN + + E D + TVD L N+ + +LG Sbjct: 184 LAKHNCLVYSYQETGAHEWAFKDGDEVYQITVD--------GNLCTNNSSVLRNVALLGQ 235 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI +P +V ++ +L+++ +D +Y YP + K+K F + ++ Sbjct: 236 GIIYVPRVLVYEDLKQGSLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290 >gi|92112912|ref|YP_572840.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796002|gb|ABE58141.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 301 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 23/298 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + +F + SGSFT AA L + +++ + I LE+ +G++L R R + T +G Sbjct: 4 FDSMTLFVRIVESGSFTRAANALDIPRATATLAIQRLESRLGVRLLERTTRQVRPTPEGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H+ + +LE + LQ + P G LR+ ++ +L +F YP +++ Sbjct: 64 AFHQRCLHLLAELEDAEAMLQPIADNPRGVLRVELHGTHASRIVLPHLDDFHARYPLLEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DCA+R +P + SSL+ R+L T+ A+P YL+ P + + Sbjct: 124 VITTGDRRVDLVGEGIDCAVRSGEP-EDSSLVARRLATLEQVICASPAYLERMGMPSTPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI-----GEPR----ISCLQVNSYLSIMQYC 235 L H+ + F + FN DR + GE R L VN S + Sbjct: 183 SLRHHHGVHF-------ISGFN---APDRTLDVIVDGETRHVTTGGWLTVNDADSYVVSA 232 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G+ LP + + + LV ++ PS +Y YP+ + +++ F +I Sbjct: 233 LEGFGLIQLPRFRLTPHLETGELVEVLPRWEKPSLPLYAVYPQRRHLSPRVRVFLEWI 290 >gi|307300197|ref|ZP_07579982.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306905086|gb|EFN35669.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 310 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF GS AA +L S +++SR +S LE VG++L +R R L L+E G + Sbjct: 5 DAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSEAGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V LE + P G L I++ LG+ +L+ L +FL LYP + ++ Sbjct: 65 YAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPTVSVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184 L+L ++ +++ + D A+R+ + + SSLI +L + A+P YL N Sbjct: 125 LLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRIGEPA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239 +L KH ++ F + +E +++ +++ R I PR C+ VNS + G Sbjct: 184 DLAKHQILAFTNF---GLEAWSFTPAKGSSIPRTIQFTPR--CI-VNSVRAAAASAAAGR 237 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ L Y V + + L ++ D P + P+ + K++AF +F Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDF 290 >gi|260431147|ref|ZP_05785118.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] gi|260414975|gb|EEX08234.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] Length = 304 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE +G++LF R R L+ TEQG Sbjct: 5 DNIRTFVRVYDLGSMSAAGRDLRISPAVTSARISQLEDHLGVRLFQRTTRNLSPTEQGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V ++ + ++ + P G L +A + +G+ L+ + EFL YP+I ++ Sbjct: 65 FYPGAVAVLDAVDQAEAQVMHLTEAPRGTLFVAAPLGVGRRLIAPQVPEFLDKYPEIDVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A + P + S+L RK+ AAP Y+ P S + Sbjct: 125 LRLTDRSVDLTTEGLDLAFFIGLP-EDSTLRIRKIADCQRILCAAPDYVARRGMPRSGAD 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 L D+H + P E F WL + P G R + + + + + + G G Sbjct: 184 LIADRHECLNL--RYPGATE-FQWL--LQTPDGPKRFAVSGRFECDDGDVLTDWALAGQG 238 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFC--YPEALKNTGKLKAFRNFI 290 IA+ P + V ++ LV + +D TP V Y K + F +F+ Sbjct: 239 IAMKPVFEVAEHLKAGRLVPVAQD--TPPVPVQMACLYTHRRHQDPKARLFMDFV 291 >gi|71282301|ref|YP_267739.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71148041|gb|AAZ28514.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 299 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F V +GS + + + SSISRQ++ LE E+G++L + R LTE G K Sbjct: 5 NRLLYFNSVVETGSISQTSRIFDVQPSSISRQLAVLEQELGVRLLNKTTRNTGLTEAGHK 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + + + + P GKL I+ T+ G++++ + +F+ LYP+I I Sbjct: 65 YYEYSQRIVSEFDEAKRVVNDLQEVPKGKLNISMTVGFGESVVLPLISKFISLYPNIVID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ + D AIR + + S++I R+L + A+P YL N P + ++ Sbjct: 125 LELTERVVDLVEENIDVAIRSGR-LPDSTMIARQLTLNNFLLCASPQYLINHSIPHAPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H I + K +W + + + VNS Q + +G+AL+P Sbjct: 184 LKDHQCIRYNYSRWK-----DWFLMAEEKTKLSLNNTISVNSVNGQKQLVLNDAGLALIP 238 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V+ ++ +L+++M P +T F E L T + R I K R Sbjct: 239 LWAVRSELEDGSLIQVM-----PEYT--FSPYEELSATYAIYLKRELISPKTR 284 >gi|212636254|ref|YP_002312779.1| LysR family transcriptional regulator [Shewanella piezotolerans WP3] gi|212557738|gb|ACJ30192.1| Transcriptional regulator, LysR family [Shewanella piezotolerans WP3] Length = 300 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 19/287 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L++F V + GSF+ A+ ++ S+ISR+IS LE+++ +L R R L LT+ Sbjct: 1 MDLNSLQLFVHVVQQGSFSAASRKVRTPVSTISRRISELESQLDQRLLERSTRSLDLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIA--TTIDLGQNLLQGNLKEFLLLYP 120 G L+ S + ++ +I +QES SG LRI+ +D + L+ EF YP Sbjct: 61 GKTLYLFASRGFEEISAGKIAMQESQDNLSGTLRISIPPNVDAWEPLID----EFYQRYP 116 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +Q+++I + ID D D +R+ + ++ + RKL + A+P +++ P Sbjct: 117 KVQLEIICTTRRIDFVEDGIDVVLRVGE-LKHQLAVARKLGSYRHVLVASPEFIQRHSIP 175 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L + L F + + D+ W R P+ +C N Y I+ G+ Sbjct: 176 KTPDDLTELPLAVF---VNRLGNDY-WQLGDSRTAINPQFAC---NDYAPILAMVRKGNM 228 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP--EALKNTGK 282 + LP +V + LV ++ D P+F ++ YP + L N K Sbjct: 229 LGELPPTMVNKLIKSGELVELLTDYPLPAFDLHLLYPSRKYLSNIAK 275 >gi|92114917|ref|YP_574845.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798007|gb|ABE60146.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 291 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 136/302 (45%), Gaps = 29/302 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M WD L + V +G FT AAE+L S + +SR +S LE ++ L R R L +T Sbjct: 1 MKSRWDDLALLLAVVDAGGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G+ + LE + L +P+G+LR+ + + +L F YP Sbjct: 61 EEGASFIAQARQALDTLEAAEEALTVRRREPAGRLRVDAATPFLLHQIVPHLAAFHAAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L +ID+ D AIR+ + ++ SSL R L A+P YL P Sbjct: 121 KVRLELTTHETNIDLIEQRTDIAIRIGR-LEDSSLHARPLGHSRRRLVASPDYLARHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLG 238 + + L H L+ F L P+ W P+ G L +S ++++ G Sbjct: 180 ATAEALSAHVLLGFTHL-PQLN---RW------PLRGGCSVTPTLASSSGEALLRMAEAG 229 Query: 239 SGIALLPDYIVKDNPNLVR---IMEDVI----TPSFTVYFCYPEALKNT---GKLKAFRN 288 GIA L D++ +D R ++ED + P VY+ +NT G++ AF + Sbjct: 230 LGIACLADFLTRDACQAGRLSFVLEDAMLERYEPIQAVYY------RNTALEGRIAAFLD 283 Query: 289 FI 290 F+ Sbjct: 284 FL 285 >gi|315182143|gb|ADT89056.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC 11218] Length = 298 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 7/243 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V G+F AAE+L LS +S+ ++ LE + ++L R R + LTE G Sbjct: 7 MRAFTTVVSEGNFVKAAERLDLSPQLVSKYVAQLEDALKVRLLNRTTRRVNLTEAGQAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + L + SG LR++ + G + L + F YPD++++L+ Sbjct: 67 ERCQQVLQDIDDMENALSNLQSQVSGTLRVSAPMSFGVHHLSKPVALFQDRYPDVKVELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D A+R+ ++ S+L+ +K+ IH+ AAPHY + P + L Sbjct: 127 LTDRKVDLLDEGVDIALRIGH-LKDSALVAKKITPIHLSICAAPHYWQQHGRPTQFEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 + N + F P+ W + + S N+ I+ +LG G A+ P Sbjct: 186 QLNYLRFTYSDPRA-----WFRDWPKHVSIHDFSSDFSSNNGDVIVNAALLGRGYAIQPT 240 Query: 247 YIV 249 ++ Sbjct: 241 FLT 243 >gi|262373863|ref|ZP_06067141.1| transcriptional regulator [Acinetobacter junii SH205] gi|262311616|gb|EEY92702.1| transcriptional regulator [Acinetobacter junii SH205] Length = 300 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 146/296 (49%), Gaps = 14/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F + +GSF AAE+L + S +SR +S LE+++ + L R R L LT Sbjct: 1 MKSSIEELLAFITIVDTGSFIAAAERLGQTASGLSRSLSRLESKLEVTLLERTTRKLKLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + ++ + L + LQ S SG +R+ + +++ ++ F YP Sbjct: 61 QEGQQFLAHARKILNDLSAAEEALQRSDQDTSGLIRVDSAAPFILHVIAPLMRVFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+I+L +++ ID+ D A R + + SSL + + ++ A+PHYLK P Sbjct: 121 NIEIELNSNDQVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCKSRLYIVASPHYLKRMGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLG 238 ++L +H+LI F + + W VD + +I + +S ++ Q C+ G Sbjct: 180 TQAKQLLQHDLIGF----TRPIHINQWPIKVDDEYFFAQAKI---KASSGETVRQLCLRG 232 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290 GIA L ++ + + N LV + ED I S+ +++ Y + +++ F F+ Sbjct: 233 QGIARLSEFEIWQDLNEGRLVALFEDQIEHSYQSIHAVYYQQEHLAKRVRLFIEFL 288 >gi|299770124|ref|YP_003732150.1| transcriptional regulator, LysR family protein [Acinetobacter sp. DR1] gi|298700212|gb|ADI90777.1| transcriptional regulator, LysR family protein [Acinetobacter sp. DR1] Length = 297 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 16/290 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F + GSF AAE L+ S + S+ IS LE E+G++L R R L TE G + Sbjct: 1 MFISIIEQGSFVKAAENLNTSVAQASKLISKLENELGVQLLKRSTRSLKPTELGLAYYHR 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + + +I ++ S P GKL+I+ G L L F Y I++ + Sbjct: 61 IKQLMAEFDEIEISIKNQSRAPVGKLKISAPNSFGTVQLSKTLVNFAQKYSQIELDVSFT 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +++ + D AIR+ + ++ ++LI L I A+P YL+ P S+Q+L+ H Sbjct: 121 DRTVNVIEEGFDIAIRIGE-LKDNNLIATPLSQIRFVLVASPLYLEKFDCPQSLQDLETH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGIAL 243 + I + + + W P + + VN + + + + G GIA Sbjct: 180 SCIIDTNF----KDPYEWAFFEKSPSN--VLHTINVNGRIHFANTEACLAATIAGLGIAR 233 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +I+KD + ++ I+E+ P +Y YP A K++ +++ Sbjct: 234 LPMFILKDALIDKKIIPILENYELPRRGLYAVYPPAKHLANKVRTLIDYL 283 >gi|296115560|ref|ZP_06834187.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295977809|gb|EFG84560.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 297 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 124/288 (43%), Gaps = 17/288 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA SFT AA +L SQS++S I LET + ++L R R ++ TE G +L Sbjct: 9 LNAFMTVAEEQSFTRAAAKLGTSQSTLSHTIRRLETRLNVRLLTRTTRRVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L E S KPSG +RI T+ LL L + L YPD+ ++L Sbjct: 69 TALVPALDMISSEIASLSELSEKPSGTVRITTSEHAANTLLWPALSKLLPKYPDLHVELA 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ DI + D +RL + I + + M AP Y + P Q+L Sbjct: 129 VDSSLTDIVAERFDAGVRLEETIARDMIAVPIGPPLRMAVVGAPSYFERHPVPRKPQDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 H I +P + W + R+ L N+ I Q + G G+A Sbjct: 189 HHTCINL--RLPTSGGVYAWELEKGKRALRVRVDGQLTFNNVPMIRQAALGGFGLAC--- 243 Query: 247 YIVKD-------NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 I++D + LVR++ED P + YP +++ AFR Sbjct: 244 -IMEDQSAPYLADGRLVRVLEDWCPPFPGYHLYYPSRRQSSA---AFR 287 >gi|222106901|ref|YP_002547692.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221738080|gb|ACM38976.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 312 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 11/291 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S WD LR+ +A++ AA L + S++ R++ LE +G+ LF R G LT Sbjct: 6 SLAWDDLRLVKAIAQALGMAGAAATLGIDHSTVFRRLGALEEALGVPLFERRRSGYALTP 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + R + ++ + LQ + P+G++R+ T L LL F YPD Sbjct: 66 TGEEAVRTAERIEAEVAQLERRLQGREIAPAGEIRVTTADSLLVYLLTPLFARFQQAYPD 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQ+ +++ N +++S AD AIR L+ R++ I Y P Sbjct: 126 IQLDVVIGNNALNLSRRDADIAIRATDN-PPDMLVGRRIGLIAWALYGRGQDFAAASAP- 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGS 239 EL+ + G ED L V + P+ + NS L++ G Sbjct: 184 KPAELNAAHWACLG-------EDMAGLKVVKAAKQQLAPKQLRYRANSVLALADAVEAGI 236 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P +I P LVR+ + S +++ + L+++ +++ F +FI Sbjct: 237 GIGHIPCFIGDVRPALVRLSPTIPDYSASLWLLTHQDLRHSPRIRVFMDFI 287 >gi|218694903|ref|YP_002402570.1| putative nucleic acid-binding regulator [Escherichia coli 55989] gi|218351635|emb|CAU97350.1| putative nucleic acid-binding regulator [Escherichia coli 55989] Length = 299 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D P Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFPPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|15595321|ref|NP_248813.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099115|ref|ZP_01363033.1| hypothetical protein PaerPA_01000124 [Pseudomonas aeruginosa PACS2] gi|116053844|ref|YP_788281.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254237635|ref|ZP_04930958.1| hypothetical protein PACG_03720 [Pseudomonas aeruginosa C3719] gi|254243231|ref|ZP_04936553.1| hypothetical protein PA2G_04035 [Pseudomonas aeruginosa 2192] gi|296386610|ref|ZP_06876109.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313112312|ref|ZP_07798079.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9945951|gb|AAG03513.1|AE004450_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115589065|gb|ABJ15080.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169566|gb|EAZ55077.1| hypothetical protein PACG_03720 [Pseudomonas aeruginosa C3719] gi|126196609|gb|EAZ60672.1| hypothetical protein PA2G_04035 [Pseudomonas aeruginosa 2192] gi|310884581|gb|EFQ43175.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 302 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 26/290 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GS AA+ L ++ S++S+QI LE+ + L +R R LTLTE G + Sbjct: 7 MAIFATVVDKGSMAAAAQSLGMTPSAVSQQIRKLESRAQVTLLHRTTRRLTLTEAGEAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R +++ E + L E P G+LR+A + L+ LK L + +++QL Sbjct: 67 RSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQLRLQLF 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184 ++ ID+ + D AIR+ + SSL+ R L AAP YL+ P + Sbjct: 127 FQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPINRPEQLT 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVL 237 E+D +L T L N L T+ P G EPR++ N L++ Q+ + Sbjct: 186 EVDWISLNTSNHL--------NHL-TLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLD 233 Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G G++ P V+D N L +++ + P +Y P K+K Sbjct: 234 GLGVSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVK 283 >gi|226946235|ref|YP_002801308.1| LysR family regulatory protein [Azotobacter vinelandii DJ] gi|226721162|gb|ACO80333.1| Bacterial regulatory protein, LysR family [Azotobacter vinelandii DJ] Length = 295 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 15/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +++F + GSF+ AAEQ +S++S + I LE+ +G++L R R +++T G Sbjct: 4 FQAMQLFARIVELGSFSKAAEQQGMSRASATALIKQLESRLGVRLLQRTTRQVSVTLDGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ V ++E + L +++ P G+L++ LG+ ++ L +F YP+I + Sbjct: 64 SYYQHCRSVLGEIEEVESVLSQNARHPRGRLKVDLPASLGRLVVIPALPDFQARYPEIVL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ ID+ + DC +R+ + S+LI R L + A+ YL P S+ Sbjct: 124 EIGIGDRMIDLVREGVDCVVRIGG-LSDSTLIARSLPALPQVTCASAGYLARHGLPTSLD 182 Query: 185 ELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 EL H I T G L P + T P + L VN + + C G Sbjct: 183 ELQGHRCIDYLSATTGRLAPLEFAVDGRIETRSLP------ASLAVNHGEAYVAACEAGL 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P Y V+ +LV ++ P+ + YP T +L+ F +++ Sbjct: 237 GIVQVPRYHVERQLAAGSLVELLPQHPPPALPMTVLYPHHRHLTPRLRVFIDWL 290 >gi|325517999|gb|EGC97815.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 305 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 15/273 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F +GSF AA +L ++S++ + I LE +G +LF R R L LT+ G + Sbjct: 14 AFVAAVDAGSFAQAAARLGQTRSAVGKAIGRLEARLGTRLFVRTTRRLALTDDGQAFYER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ +L+ Q L+ + +G+LR++ + G++ L L + +P +Q++ Sbjct: 74 CAQALEELDAAQHMLEAGRREAAGRLRVSAPVVFGRHHLTPLLLDLADRHPRLQVEGHFT 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D + + D AIR S +L+ R L M A+P YL+ P S EL H Sbjct: 134 DRVVDFADEGVDLAIRSGALPDSDTLVARPLGMQAMVVCASPAYLRAHAAPRSTAELGAH 193 Query: 190 NLITF---GDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 I + G P W L D + +P + L + S++ + G+G+ + Sbjct: 194 RCIVYLHGGRANP-------WTLTEPDGRVVQPALPYRLGFDDIDSLVAAAMRGAGLVHV 246 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P+++V+D LVR+M+ + + ++ +P Sbjct: 247 PEWLVRDALRTGALVRVMDHMASAGTPMHVVWP 279 >gi|322833079|ref|YP_004213106.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321168280|gb|ADW73979.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 298 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 141/292 (48%), Gaps = 16/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F V ++GSFT AAEQL LS+ +SR+++ LE + +L R+ R L++TE G Sbjct: 4 EDLRIFIAVVKAGSFTTAAEQLMLSKQYVSRRMASLEAGLHARLLNRNTRKLSVTESGQL 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + + G RI+ + G + L + EFL +P IQ Q Sbjct: 64 FAQHAQRILDDIEEAERAVSPRRQALQGTYRISIPMSFGISHLSPLIAEFLGQHPAIQFQ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D A+R+ + SSL+ R+L + +P YL+ P ++ Sbjct: 124 VELVDRYVDLVGEGFDIALRIGN-LADSSLVARRLGELKRVICCSPEYLQRKGTPEMPED 182 Query: 186 LDKHNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H+ + +G +E L V PI +S N+ + V G G+ Sbjct: 183 LLNHHCLRYGREGQTGWELELEGKRRLFDVRGPI----VS----NNGEVLRDAAVAGLGL 234 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP++IV LVR+++ + +++ YP+ + + + F +F+ Sbjct: 235 VLLPEFIVGPALQYGALVRVLDAFHPGALSLHAIYPQHRQRSEVTRVFLDFL 286 >gi|293608457|ref|ZP_06690760.1| transcriptional regulator [Acinetobacter sp. SH024] gi|292829030|gb|EFF87392.1| transcriptional regulator [Acinetobacter sp. SH024] Length = 313 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + E+ ++ KP G+LR+ + G + + + EF YP++ ++ Sbjct: 73 ERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YL+ P S ++L Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGMPKSPEDLK 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P D++ L T L ++ ++ GIALLP + Sbjct: 193 DHACLRLVN--PSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALLPMF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 D N L I+ + +P VY P R+FI K R W Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|293605288|ref|ZP_06687674.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292816344|gb|EFF75439.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 324 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 148/309 (47%), Gaps = 21/309 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + + + V +GSF+ AA Q + +++SR+++ LE +G++L +R R L+LT Sbjct: 24 MSDRLEAMALLLAVVEAGSFSQAARQAKMPLATVSRKVADLEAHLGVRLLHRSTRQLSLT 83 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G ++ + + V+P G+L + I G+ L + EFL YP Sbjct: 84 EAGQAYVAACRQILDAVGEAERAATGEYVEPKGELVMTAPIVFGRLHLLPVIAEFLKTYP 143 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI ++++L ++ + + ++ D A+R+ + SSL+ + ++ A+P YL P Sbjct: 144 DIDVRMVLTDRVVPLLEEHIDLAVRIAD-LPDSSLVAIPVGSVRRVVCASPAYLARHGTP 202 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L ++L H +TF + + + +F + I P S L V++ + + V G G Sbjct: 203 LHPRDLSHHACVTFEKMASRQVWNFQ---SGKSSIAIPVRSRLAVSTAEAAVDAAVAGIG 259 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG------KLKAFRNFIF 291 + + Y + L ++ D PS +P +L +TG K++AF +F Sbjct: 260 LTRVISYQMASALQAGELDIVLADFEPPS------WPISLVHTGQGALPLKVRAFLDFAA 313 Query: 292 --LKARDWK 298 LKAR ++ Sbjct: 314 PRLKARSYE 322 >gi|289625131|ref|ZP_06458085.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648700|ref|ZP_06480043.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330868002|gb|EGH02711.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 305 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 135/292 (46%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPLNLP 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H +I + ++A VDR + + VNS + C G G+ Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMADGVEVDRALA----CSISVNSADGYVAACEAGFGL 238 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V LV ++ P + YP + + +++ F +++ Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290 >gi|260574141|ref|ZP_05842146.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2] gi|259023607|gb|EEW26898.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2] Length = 302 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 12/291 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW +R F VA +GS + AA L SQ S+ R I +ET + + LF R RGL LTE Sbjct: 11 LDWSLIRSFLAVAETGSLSAAARALGQSQPSLGRHIRQVETALEVALFTRQPRGLALTEA 70 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L E+ + S + +G +RI + + ++L L P I Sbjct: 71 GQALLPAAQEMRAAAARLALTAAAKSDRLAGSVRITASRIMSHHILPPILSALRQAEPGI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 QI L+ + ++ AD A+R+ +P Q + +I R L + M YAA YL P + Sbjct: 131 QIDLVPSDTSENLLFREADIALRMYRPTQ-ADIITRHLADLPMAVYAARSYLDRRGRPQN 189 Query: 183 IQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL + + + D+I + M T D L+ + L G G Sbjct: 190 RAELLALDFVGYDRSDMILRMMAGLGVPVTRD-------FFGLRCDDQLVYWNLVRAGGG 242 Query: 241 IALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290 I + I +P LV ++ ++T P+ ++ AL++ +L+ +F+ Sbjct: 243 IGGMQRNIGDADP-LVEPLDGIVTLPALPLWLAAAPALRSAPRLRRVWDFL 292 >gi|148555991|ref|YP_001263573.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501181|gb|ABQ69435.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 320 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 127/286 (44%), Gaps = 14/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF V +G+F+H ++L + S++S+ IS LE +G +LF R + L +TE G +L+ Sbjct: 25 LRVFVAVVETGNFSHTGQRLRVVPSTVSKHISALEKRLGGQLFVRSTQKLGVTELGLRLY 84 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E +I++ E + +P G L+IA Q L L FL P + + + Sbjct: 85 DHALAILQDVEAAEIDISEYNSEPQGILKIAAGTVFAQRHLAPILIRFLEANPKVSLDVS 144 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D D AIR+ + + + I ++ AAP YL P +L Sbjct: 145 LSTTSNHLISDGIDVAIRISDALDPGLIAVKLAPNIRLYC-AAPAYLAREGTPARASDLA 203 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIAL 243 +HN + ++ + W + G + N ++Q V G GI Sbjct: 204 RHNCL----VVRGVAQSAQW--PIKGETGATEFIAVSGNFVADNVDLLLQAVVAGVGIGH 257 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP ++V D + +LV I D + +Y +PE K +AF Sbjct: 258 LPLFMVYDLLASGDLVEIFPDSRAVASHIYAVFPERRNMPLKTRAF 303 >gi|119945399|ref|YP_943079.1| transcriptional regulator, substrate-binding of LysR family protein [Psychromonas ingrahamii 37] gi|119864003|gb|ABM03480.1| transcriptional regulator, substrate-binding of LysR family protein [Psychromonas ingrahamii 37] Length = 300 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 8/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D ++L +F +V +GSF AA +S ++S++IS LE E+ ++L YR R L+L+E G Sbjct: 3 DVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L++ + ++ + S K SG+++++ G+ LL + EF +PDI Sbjct: 63 ETLYKHAKNINQQVNEAIGAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPDIS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + L+N+ D+ + D AIR +++S+LI + L+ H +P Y++ P I Sbjct: 123 VNIRLENEFADLVTEGLDLAIRTGN-LENSTLIAKPLIVSHWIVCCSPDYIEQHGMPKKI 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 L HN + + + +W + RIS N+ ++ + + G GIA Sbjct: 182 DALLTHNCLAY---TGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P V + N L+ ++ D S VY Y Sbjct: 239 YVPRCGVYEDLQNGKLIALLTDYKPRSLGVYAVY 272 >gi|254225854|ref|ZP_04919457.1| transcriptional regulator, LysR family [Vibrio cholerae V51] gi|125621581|gb|EAZ49912.1| transcriptional regulator, LysR family [Vibrio cholerae V51] Length = 295 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 19/281 (6%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 1 MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPD Sbjct: 61 AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I++QLI + + D I R + + S S L YA+P YL P Sbjct: 121 IRVQLITTTPG-QLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 ++QEL +HN++ +G+ + F + T R++ + ++ Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQ----GKRLTLTGNFATTNPEALFYAGKA 229 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 G GI + ++K+ NLVR++ DV TVY YP+ Sbjct: 230 GMGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270 >gi|312602525|ref|YP_004022370.1| LysR family transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312169839|emb|CBW76851.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica HKI 454] Length = 322 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 22/296 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RVF VA +GSF AAE+L++S + S+ I+ LE E+ ++L R R ++LTE GS Sbjct: 23 FTSIRVFREVAEAGSFVKAAERLNISTAMTSKHIASLERELHVRLLNRTTRQMSLTEAGS 82 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E L+ + L + +P G L+++ + + +P + I Sbjct: 83 VYYEQCCEALDILQAAEAALGAQNSQPQGVLKVSAPGWFATRRFADLVAAYQHRFPHVLI 142 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L+N+ +D++ + D +R S SLI R L + AP YL R P Sbjct: 143 DLRLENRFVDLTQEGYDMVLRATSE-PSPSLIVRPLCEVPFLLVGAPDYLARHRMPREPL 201 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-------ISCLQVNSYLSIMQYCVL 237 +++ H ++ + ++ L V+ + PR + L+ N +Q Sbjct: 202 DIEAHRIV---------LPNYTNLDRVE--LSGPRGRFTVRNRAVLKTNDTSMALQCVKA 250 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A LP++IV + L++++ D + S VY Y T K++ F +F+ Sbjct: 251 GLGLAYLPEWIVTTEVRDGALLKLLPDYVLFSPRVYVVYTSRKYMTPKVRTFIDFL 306 >gi|254419504|ref|ZP_05033228.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] gi|196185681|gb|EDX80657.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] Length = 298 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 18/263 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +SGSF+ A L L+ S++SR I +E +G++L R R LTLT +G Sbjct: 11 EMEIFVAVTKSGSFSAAGRVLGLTPSAVSRTIDRIEARLGVRLMLRTTRVLTLTAEGQTY 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + L+ + + + P G++R++ ++ G+ + L +F+ YP I I + Sbjct: 71 LGAARRILADLDDAEQGIADQGA-PRGRVRVSASLAHGRQHVVPLLGDFVRRYPHILIDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D++ AD AIR P+ S L R+L A+P YL P ++L Sbjct: 130 NLTDVVVDVAAGQADVAIRF-GPLADSPLTARRLGDTGRTIVASPDYLARRGTPTVPEDL 188 Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H+ + F + P + ++ TV PI + N+ ++ Q V G G+ Sbjct: 189 HDHDCLNFNFRRAEPVWPFRRDGRDYALTVRGPI--------EANNGETLTQLAVAGVGV 240 Query: 242 ALLPDYIVK---DNPNLVRIMED 261 + ++ V D LV ++ED Sbjct: 241 TRVGNFSVADAIDAGRLVPLLED 263 >gi|323495945|ref|ZP_08101011.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323318980|gb|EGA71925.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 295 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 17/295 (5%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +++ + S+IS+++ LE +G++L R R +T TE Sbjct: 1 MDWIQSVHSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + S P+G L+I T+ +G L L +FL +YPD Sbjct: 61 AGALFYERAKMQLEDWQSIVDETRSVSQSPAGLLKIGATLAVGSKFLVQYLNDFLQMYPD 120 Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I+IQLI ++S+D R + + S S L YA+P YL+ E Sbjct: 121 IRIQLITTTPGQLPELSLDL--FISRELEQLNSLSFKATPLFEHRAGFYASPQYLQQHGE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P +++EL +HN + +G+ + + L+ R + +S + M Y S Sbjct: 179 PKTVEELTQHNALIWGERPQREIT----LSKSKRIM----LSGNFATTNPEAMFYAAKNS 230 Query: 240 -GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + D ++KD N L RI+ ++ TVY YP+ + K F +++ Sbjct: 231 MGILVTNDVMIKDELNTGTLKRILPEITADEATVYAYYPKLDYQHTRTKLFLDYL 285 >gi|299771994|ref|YP_003734020.1| LysR substrate binding domain protein [Acinetobacter sp. DR1] gi|298702082|gb|ADI92647.1| LysR substrate binding domain protein [Acinetobacter sp. DR1] Length = 293 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 34/310 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L F V+AR+ + T+AA + + S+++R+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E +++++ G++RI T G L L EF + Y Sbjct: 61 LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD + + +P +I R L + Y + +YL Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSQNYLAQNPP 174 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228 +++L +H + + +D + P + CL+ +S Sbjct: 175 IRGLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L+ G+G+A+LP ++ D P L ++E + + T + L++ ++K + Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELDVVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278 Query: 289 FIFLKARDWK 298 ++ +A ++ Sbjct: 279 YLRKQADKYQ 288 >gi|126666857|ref|ZP_01737833.1| transcriptional regulator, LysR family protein [Marinobacter sp. ELB17] gi|126628573|gb|EAZ99194.1| transcriptional regulator, LysR family protein [Marinobacter sp. ELB17] Length = 299 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 139/295 (47%), Gaps = 10/295 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR +A G+ A E L + Q+++ R++ +E + ++LF R GL LT Sbjct: 1 MDWDYLRYVRALAIGGTLAKAGEILGVHQTTVLRRLDHMEEALAVRLFERSREGLKLTAA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ ++E + +L++ + GK+RIAT L LL L L+ YPDI Sbjct: 61 GEMAFHEAEKLAAEIENLERKLRQETTALEGKIRIATPDTLMAELLAPILASLLIKYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++++ DN ++S AD +R Q++ +R + + YA P Y + R Sbjct: 121 ELEVLTDNDVSNLSHREADLTLRPENKPQATWEGER-IAAMEYAVYATPGYCRRNRGFDI 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Q ++ I IP E F+ LAT R + S ++ NS +++ G+G Sbjct: 180 DQRPEQLRWI-----IPD--ETFSLLATGRWYRRHLKHVTSVIRCNSLQAMVALARSGAG 232 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +A+LP Y+ +D L R+ E + S ++ + + +++ F+ + R Sbjct: 233 VAVLPCYLGEDARELRRLSEPLEGESVDLWLHVNQDTQQMARVRLVMAFLVSRLR 287 >gi|307546330|ref|YP_003898809.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307218354|emb|CBV43624.1| transcriptional regulator [Halomonas elongata DSM 2581] Length = 324 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 11/296 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + +F V GSFT A+ L + ++++SR+I LE +G +L R R L+LT Sbjct: 2 MQQDLNDALIFARVVEQGSFTAASRLLSIPKTTVSRKIQALELRLGARLLNRTTRRLSLT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + +L + +Q P G LR+ + + +++F LYP Sbjct: 62 EAGGVYYDYCHRIVEELGEAESAVQRLEGNPRGWLRVTAPFTMCTDFTSALMRDFRTLYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++I L+L N+ +D+ D A+R+ P+ SSL+ R L YA+ Y+ EP Sbjct: 122 EVKIDLVLSNERLDLVAQQIDVALRI-GPLPDSSLVARPLARYRSFIYASSRYIARHGEP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVL 237 +L H T + + F W + + I + I V N + + Sbjct: 181 REPADLAYHP--TLARSTDQRGQRFFW--QLHKGIQQQEIELDPVAVANDPFVLRGLLLD 236 Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ L + + P L RI+ + P +P + K++ F +F+ Sbjct: 237 GSGLMLASEAVACLGPEEHQLRRILPEWEGPEVEFNAVFPGGRLISPKVRTFVDFV 292 >gi|296160780|ref|ZP_06843594.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295889083|gb|EFG68887.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 324 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 132/299 (44%), Gaps = 26/299 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + T + E + +PSG LR+ + +GQ+ + + + LYP++ ++L Sbjct: 66 LKRCQQILADVSTAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRALYPEVTVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ AD A+ + +S L+ L T A+P Y++ P +L Sbjct: 126 TLSQRMPDLFEGSADVAVIGASTLPNSDLVSLPLGTTFSILCASPAYVRAHGAPQKPADL 185 Query: 187 DKHN-LITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H LI P +E N T++ + P + VN S++ G GI Sbjct: 186 AHHECLILHTPAFPPHDWVLEGPNGCETME--VNGP----VHVNIAESLIVAIREGMGIG 239 Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y ++D LVR++ +Y YP R FI K R W Sbjct: 240 MLPLYAAISGLRDG-TLVRVLPQYTAQKMNIYALYPS-----------RKFIDAKTRTW 286 >gi|218888868|ref|YP_002437732.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218769091|emb|CAW24851.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 302 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 26/290 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GS AA+ L ++ S++S+QI LE+ + L +R R LTLTE G + Sbjct: 7 MAIFATVVGKGSMAAAAQSLGMTPSAVSQQIRKLESRAQVTLLHRTTRRLTLTEAGEAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R +++ E + L E P G+LR+A + L+ LK L + +++QL Sbjct: 67 RSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQLRLQLF 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184 ++ ID+ + D AIR+ + SSL+ R L AAP YL+ P + Sbjct: 127 FQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPINRPEQLT 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVL 237 E+D +L T L N L T+ P G EPR++ N L++ Q+ + Sbjct: 186 EVDWISLNTSNHL--------NHL-TLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLD 233 Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G G++ P V+D N L +++ + P +Y P K+K Sbjct: 234 GLGVSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVK 283 >gi|152986420|ref|YP_001347980.1| putative HTH-type transcriptional regulator YafC [Pseudomonas aeruginosa PA7] gi|150961578|gb|ABR83603.1| putative HTH-type transcriptional regulator YafC [Pseudomonas aeruginosa PA7] Length = 314 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 12/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSFT AAE+L + ++ +S++IS LE +G +L R R L LTE G + Sbjct: 7 MATFGAVVEAGSFTRAAERLSIPKARVSQRISDLERHLGARLLQRTTRSLNLTEDGRAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ + L+ ++P G LRI + + +L L EF YP + + L Sbjct: 67 SKCASILQQVDELEATLRGGLIEPRGSLRIEALASVARWVLAPRLHEFQHRYPQLTLTLC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + DCAIR + SSL+ R + + YAAP YL++ +EL Sbjct: 127 ASDRVSHLLEEGIDCAIR-GGTLPDSSLVARHACDVRLGLYAAPGYLEDTGRARHPRELR 185 Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H +++ G P F W L + D L+ + + C+ GSGI Sbjct: 186 EHRRLSWFTGQRNP-----FAWKLESTDGSFDLGASQGLRFDDPDVAIASCLAGSGICPA 240 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + V+ LV ++ ++ YP + +++ F ++ Sbjct: 241 APFAVESWVRAGALVPVLPQWSFAPRPIHLVYPGDRHLSARVRCFVDWAL 290 >gi|319795354|ref|YP_004156994.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597817|gb|ADU38883.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 306 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 135/274 (49%), Gaps = 10/274 (3%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 SF A L +S S++ + ++ LE ++G++LF R R + LTE+G+ H + +L+ Sbjct: 18 SFAKAGRLLGISASAVGKNVARLEQQLGLRLFNRTTRHVRLTEEGAMFHERCRRILDELD 77 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + +Q++ P G+LR++ +G L L F +P+I++ L +++ +D+ + Sbjct: 78 DARAMMQDAVAAPRGRLRVSLPT-IGYRFLLPILPAFKARFPEIELDLDFNDRLVDVIAE 136 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D AIR + + S L+ R+L + A+P YL P +L H+ + + + Sbjct: 137 GVDVAIRSGE-LGDSQLVARRLGPFNFVLVASPAYLAEHGVPQVPADLAGHSCLRYKFVT 195 Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNL 255 +ED++ P P L N+ +++ V G G+A +PD++ +D+ L Sbjct: 196 GGKIEDWDLPGL---PTQLP--PGLLCNNMEAMLGAAVAGLGVAYMPDFLARDSLCRGEL 250 Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 R++E + + + + + K++AF +F Sbjct: 251 QRVLETHLVRQGQFSALWSSSRQLSPKVRAFVDF 284 >gi|239994575|ref|ZP_04715099.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 299 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 18/288 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F +A GSF+ AE +++ S +S++I+ LE E+G +L YR R LTLTE G Sbjct: 4 DDLILFAQIAEMGSFSKVAEANNITNSVVSKRIAKLEKELGTQLLYRTTRKLTLTEAGQA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + V + + S + SG ++++ G LL + EF L+P + + Sbjct: 64 LKQGAMNVKASTQEAIDTISGYSEQISGHIKMSVPTISGDLLLADAVAEFCTLHPGLSVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +++ + D IR ++ SSLI R + H +P Y++ P + ++ Sbjct: 124 MSLDNRFVNLVEEGFDLVIRT-GYLEDSSLIARHFLDSHWVVCTSPDYIRRKGRPKAPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L HN + + E +F ++ TVD L+ + + G Sbjct: 183 LSFHNCLLYSYHTSGAREWEFTSSQGSYTITVDGAFSSDNAGALR--------KAALAGR 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA +P +V + N LV + + + VY YP + + + K+K Sbjct: 235 GIAYVPKCLVFEDLCNGTLVDLFPERVGKVLGVYAVYPYSRQPSRKIK 282 >gi|254245631|ref|ZP_04938952.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124870407|gb|EAY62123.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 325 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 18 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 77 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 78 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPDVHVEL 137 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+P Y+++ P +L Sbjct: 138 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVESHGVPQRPADL 197 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H + G + P D LA + PI P +VN ++ G GI Sbjct: 198 AQH--VCLGMVAPGFHFDEWALAGPNGDEVVPITAP---PFRVNVAEALAVAVREGMGIG 252 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + ++VR+M + + +Y YP K++ + +F+ Sbjct: 253 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 303 >gi|58040068|ref|YP_192032.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58002482|gb|AAW61376.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 319 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 14/271 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF VA SGSF AA L LS ++S+ + LE +G LF R AR L+LT +G Sbjct: 6 DFEGWAVFARVAESGSFAAAARSLGLSAPTVSKIMGRLEHRLGATLFQRSARHLSLTAEG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + E + EL+E + P G +R+A + G+ +L L FL YPDI Sbjct: 66 AECLDRARRILSEGEGLETELREGTATPRGMIRLAAPMTFGREVLGPALPGFLEQYPDIT 125 Query: 124 IQLILDNKDIDISMDYADCAIR-----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +++ LD+ +D+ + A+R LR + + + + VT + + L Sbjct: 126 LEMDLDDGVVDLLGGRFEAAVRITSGLLRPAVSGQAFLLCRSVTRFVCSEQFRARLGEVE 185 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 P + + L+ +P DF L D R+ + NS ++ Sbjct: 186 NPEDLT--GQPGLLYTNAAVP----DFLRLRHTDGRQASVRLKGRVSANSGDMLLPAIRA 239 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFT 268 G GIALLPD++++ + RI+E + P +T Sbjct: 240 GLGIALLPDFMLRPDLESGRIVE--VLPGWT 268 >gi|15597743|ref|NP_251237.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9948605|gb|AAG05935.1|AE004682_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 305 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF VA +G F AA Q++LS +++S+ ++ LE + ++L R R ++LTE G Sbjct: 11 LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE L PSG LR++ + L L + FL YP+++++L+ Sbjct: 71 QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPELRLELL 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D A+R + S L+ R L+ + AAP YL +PL + L Sbjct: 131 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALR 190 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F W DR I P +V+S L++ + G G++L+P Sbjct: 191 EHECIRFS----LSGHADRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 246 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ LV ++ D ++ YP + + GK + F +F+ Sbjct: 247 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 292 >gi|15598906|ref|NP_252400.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116051708|ref|YP_789453.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890013|ref|YP_002438877.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254236621|ref|ZP_04929944.1| hypothetical protein PACG_02624 [Pseudomonas aeruginosa C3719] gi|254242403|ref|ZP_04935725.1| hypothetical protein PA2G_03150 [Pseudomonas aeruginosa 2192] gi|296387781|ref|ZP_06877256.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313109116|ref|ZP_07795087.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9949876|gb|AAG07098.1|AE004790_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115586929|gb|ABJ12944.1| putative LysR-family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168552|gb|EAZ54063.1| hypothetical protein PACG_02624 [Pseudomonas aeruginosa C3719] gi|126195781|gb|EAZ59844.1| hypothetical protein PA2G_03150 [Pseudomonas aeruginosa 2192] gi|218770236|emb|CAW25998.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310881589|gb|EFQ40183.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 301 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 7/259 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L + ++++R I +E ++G +LF +H G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + S+ P G++RI T LG L L + + YP + Sbjct: 62 GQALLKHAEAMENTALLAQEEMSQ-SISPLGQIRIGVTEGLGSVFLAPRLAQLMRHYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I+ AD AI L +P + +I R L + +A+P YL+ Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRP-SADLVITRLLTRYRLALFASPAYLEQAPPLRD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H I + D + E + P + S ++ Q G G+A Sbjct: 180 RDDLGRHQWIGYVDDLLFSQELMFHHSFCRHP-----QVVFRSTSVVAQQQAAQAGIGLA 234 Query: 243 LLPDYIVKDNPNLVRIMED 261 +LP ++ +P LV ++ + Sbjct: 235 ILPHFMGSRDPLLVPVLPE 253 >gi|310816259|ref|YP_003964223.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308754994|gb|ADO42923.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 313 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 138/292 (47%), Gaps = 9/292 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VA + SF A+E +++S S++SR+++ LE +G +L R R + T+ G+ R Sbjct: 23 AFVAVAEAMSFARASEIVNVSASTLSRKVARLEDMLGTRLLERTTRRVVFTDLGAIYFRH 82 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 EV +L+ + +P G LR++ + G+ L G + +F+ YP ++++ Sbjct: 83 CREVLDRLKEADDVIASYHSEPQGLLRVSFPVAFGRLALPGIIADFIATYPKVKVEANYT 142 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + + +R+ + SSL+ RK+ T A+P Y+ P + EL H Sbjct: 143 DRFVDLLDEGYNAVVRI-GSLPDSSLVARKIGTNRKQLVASPEYIARYGRPQNPAELAAH 201 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248 + + F + W I +S + +S +I + G+GI ++ +YI Sbjct: 202 HCLCFSRYVRGGT---TWQFKRGEQIDTVHVSGDFRSDSSEAIYEAACHGAGIGIIANYI 258 Query: 249 VK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + +LV ++ E + P + Y CY K +AF +F+ + R+ Sbjct: 259 CGEAVERGDLVPLLPEWTVWPETSFYVCYASNKHLLPKTRAFSDFLVQRLRN 310 >gi|260776952|ref|ZP_05885846.1| transcriptional regulators LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260606618|gb|EEX32892.1| transcriptional regulators LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 317 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 1/181 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSFT AA ++ SS+S+QI LE E+G++L R R +LT G + Sbjct: 5 NQLALFIDVVQQGSFTKAATLHNMDNSSLSKQIKKLEVELGVQLLNRSTRSFSLTPAGEE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + L +P G++RI + +GQ+ LQ + +F+ YP+++I Sbjct: 65 ILEQAHNLVGTLGHVHSIADSYQARPKGRIRITAPLHIGQHYLQPVITQFMRSYPEVEIN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D+K DI D+ D A RL + ++ SSLI +K+ I A+ ++ EP + +E Sbjct: 125 LQMDDKRSDIISDHFDVAFRLGR-LEDSSLIAKKIADIRPVILASESFIDQHGEPQTPEE 183 Query: 186 L 186 L Sbjct: 184 L 184 >gi|229524639|ref|ZP_04414044.1| LysR-family transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229338220|gb|EEO03237.1| LysR-family transcriptional regulator [Vibrio cholerae bv. albensis VL426] Length = 295 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 17/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VA+ GSF+ AAEQL S+ +SR + LE +G L +R R L+LTE G L+ Sbjct: 6 LQSFMAVAKLGSFSAAAEQLDTSKGQLSRHVKSLEQMMGCLLMHRTTRRLSLTEAGQALY 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + +++ + G L++ +LG LL L++FL YP+++++L Sbjct: 66 EKACEIDSLAYEAERIIKDLTQDNCGTLKLTAPNELGNKLLYPMLEKFLAAYPEVKLELC 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + DI D +R + S +LI R L I AAP YL+ + L EL Sbjct: 126 FERSLQDIEFGSFDLGLR-TTLLHSENLIARFLGRIRYGLVAAPMYLQ-AQSILHPNELQ 183 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H L++ G + WL T+ +P +++ ++ ++Y + + G GIA L Sbjct: 184 SHQLLSSG--------ESEWLFTL-QPDHLCKVAVNPIVKSSNYATTRLLVLNGLGIARL 234 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P Y++++ +L+ I+ + +Y Y + KL+ + IF Sbjct: 235 PFYLIEEEVRKRDLIAILPQWQISPYELYMVYAKQRLYPKKLRDLQEAIF 284 >gi|190891440|ref|YP_001977982.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190696719|gb|ACE90804.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 290 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 139/296 (46%), Gaps = 20/296 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + + +R F VA +G T AA++L +S+S +SR+I+ LE E+G +L R RG+ LTE+ Sbjct: 1 MEIEDIRTFVEVADAGGVTPAAQRLGISKSMVSRRIARLEAELGAQLLSRTTRGIALTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G+ + + + +I+ ++ P+ G+LR+A + G L + Sbjct: 61 GATFRDYAARI-----SAEIDAARETILPAGELRGRLRVAAPLSFGPTHFAPVLAQMARR 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + + ++ +D+ + DCAIR+ + S+L+ R++ ++ A+P Y+ Sbjct: 116 HPQLHVYSCYTDRFVDLITEGFDCAIRVGY-LPDSNLVARRVGPLYGKFVASPAYVAANG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + EL H + G + + + L RP G + ++ ++++ + G Sbjct: 175 APETPDELLNHQALMQGTEVWQVADGDQVLNI--RPQGR-----FKADNGVALLAAALEG 227 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA LPD + + LV +M P+ ++ P A + K++ + Sbjct: 228 IGIARLPDGLTDQHIATGTLVEVMTRYPPPTAGIFVVRPPAQHPSRKVRVLTEMLI 283 >gi|107101994|ref|ZP_01365912.1| hypothetical protein PaerPA_01003041 [Pseudomonas aeruginosa PACS2] Length = 301 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF VA +G F AA Q++LS +++S+ ++ LE + ++L R R ++LTE G Sbjct: 7 LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE L PSG LR++ + L L + FL YP+++++L+ Sbjct: 67 QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPELRLELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D A+R + S L+ R L+ + AAP YL +PL + L Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F W DR I P +V+S L++ + G G++L+P Sbjct: 187 EHECIRFS----LSGHADRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ LV ++ D ++ YP + + GK + F +F+ Sbjct: 243 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 288 >gi|330942451|gb|EGH45048.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 277 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 7/272 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L ++ S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W R + NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSFTVYFCY 273 +PD + + + R+ E ++ +P F + Y Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLY 275 >gi|307729657|ref|YP_003906881.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584192|gb|ADN57590.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 303 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 13/299 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + VF VA+ SF+ AA L + S++SR++S LE +G+ L R R L+LT QG Sbjct: 6 DLNDIAVFVRVAQLESFSRAAHALGMPVSTVSRKVSALEERLGVTLLQRTTRKLSLTAQG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 SE L + + ++ KP G LRI+ + L Q L FL YP I Sbjct: 66 RAYFDQCSEPLSHLYDAERVITQTQKKPEGLLRISGPVMLEQEPFYAFLSAFLKDYPQIH 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L N +D+ + D AIR + ++ SSLI +++ + Y + P Sbjct: 126 VDLYFTNAFLDLIAENVDVAIRFGE-LRDSSLIAQRVGRSVRQLVVSAEYARTRPLPSQP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL +H + LI + W L + + + + + + + G GIA Sbjct: 185 DELSQHPCV----LINARNNESEWHLVNGRKSVKVHVTGPVAARDFHVVSAFALRGHGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 LLP + LVR++ + +P V+ YP +L+AF + + R W+ Sbjct: 241 LLPSSYCDPRIASGELVRVLPEWSSPEIFVHAVYPTRRFMPSRLRAFLDAL----RAWQ 295 >gi|260769861|ref|ZP_05878794.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|260615199|gb|EEX40385.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] Length = 298 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 7/243 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V G+F AAE+L LS +S+ ++ LE + ++L R R + LTE G Sbjct: 7 MRAFTTVVSEGNFVKAAERLDLSPQLVSKYVAQLEDALKVRLLNRTTRRVNLTEAGQAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + L + SG LR++ + G + L + F YPD++++L+ Sbjct: 67 ERCQQVLQDIDDMENALSNLQSQVSGTLRVSAPMSFGVHHLSKPVALFQDRYPDVKVELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D A+R+ ++ S+L+ +K+ IH+ AAPHY + P + L Sbjct: 127 LTDRKVDLLDEGVDIALRIGH-LKDSALVAKKITPIHLSICAAPHYWQQHGRPTQFEALS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + N + F P+ W + + S N+ I+ +LG G A+ P Sbjct: 186 QLNYLRFTYSDPRA-----WFRDWPKHVSIHDFASDFSSNNGDVIVNAALLGRGYAIQPT 240 Query: 247 YIV 249 ++ Sbjct: 241 FLT 243 >gi|253996590|ref|YP_003048654.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983269|gb|ACT48127.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8] Length = 310 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 16/291 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F GS AA ++ ++ S+ I LE + +L R R L LTE G+ + Sbjct: 10 FVKAIEGGSIAAAARMQGITPAAASQNIIRLEASLNARLLTRTTRSLALTEAGAIYYEKV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 V + +E Q + E +P G+L+IAT++ G+++L + F +YP + I+LIL + Sbjct: 70 RLVINDIENAQSLVTELQGEPQGRLKIATSVAFGRHVLSTIIPSFTAMYPKLSIELILTD 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++ID + D +IR ++ ++ L+ +++ + + A+P Y+ EP + + L +H+ Sbjct: 130 QNIDHVKEDIDISIRFKQQLE-LGLVAKRIAVVPVLFCASPTYISRKGEPHTPEGLQRHD 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + F +P NW D EP + + N S+ + + G+GI L +I Sbjct: 189 CLMFR--MPTSGRLLNWGFLRDELRFEPELKPSIISNDINSLAELAIAGAGIVRLAAFIA 246 Query: 250 K---DNPNLVRIME-DVITPS--------FTVYFCYPEALKNTGKLKAFRN 288 N L+ + + D PS Y C+ + T K+K F N Sbjct: 247 NPLIKNGQLIPLFQRDTNNPSIMHADNEPLEFYACFRDHHAMTLKVKTFIN 297 >gi|302878608|ref|YP_003847172.1| transcriptional regulator, LysR family [Gallionella capsiferriformans ES-2] gi|302581397|gb|ADL55408.1| transcriptional regulator, LysR family [Gallionella capsiferriformans ES-2] Length = 299 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 132/286 (46%), Gaps = 17/286 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +A S AAE L + ++++SR+++ +E +G +L R R LTLTE G + Sbjct: 11 LFATIAEFHSMVRAAEHLVMPKATVSRRLANMEAALGQRLLIRTTRRLTLTEFGLEFLDH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++ Q ++ +P G+LR++ D ++ + F+ Y +IQ+ L L Sbjct: 71 CRRVSDEVAAVQDFVRSQDAQPHGRLRVSMPGDYARHHFSRAIATFIDAYAEIQLDLDLS 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR+ ++L+ RK+ H YA+P YL P EL +H Sbjct: 131 SRRVDLIGERYDLAIRMGDLTDDATLVARKIDEQHFALYASPIYLALHPAPNHPDELAQH 190 Query: 190 NLITF----GDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + G+ +P ++ W A P G L +NS I Q + G+GIA Sbjct: 191 TAVRLLSDRGNAVPWNLQSDKTLWEAI---PPGR-----LTLNSPDMIQQLLLDGAGIAA 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP + + LV+++ D P+ + P K +AF Sbjct: 243 LPCSFARADLQQGRLVQVLPDWSLPTVPAWAVMPMRRYLPAKTRAF 288 >gi|170693823|ref|ZP_02884980.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170141241|gb|EDT09412.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 327 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A GS+T AA L +S S+IS+ + LE G+KLF R R LTLT +G L Sbjct: 10 LMAFARAASLGSYTAAARSLAVSPSAISKSVQRLEQHFGLKLFSRTTRSLTLTPEGRDLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + + E + + + +P+G L++AT++ +G ++L L +F +P + + + Sbjct: 70 ERTQRLLREAEDIEQAVAAARAEPAGTLKVATSLPVGVHILAAALPQFRKRFPKVNVDVR 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D A+R+ P + LI R+L + A+A+P YLK P +L Sbjct: 130 LSDRIVDLIEEGIDVAVRVGDP-GDTRLIARRLAPHRICAFASPDYLKARGTPRHPSDLQ 188 Query: 188 KHNLITF 194 H+ + F Sbjct: 189 SHDCVNF 195 >gi|107103225|ref|ZP_01367143.1| hypothetical protein PaerPA_01004294 [Pseudomonas aeruginosa PACS2] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 7/259 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L + ++++R I +E ++G +LF +H G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + S+ P G++RI T LG L L + + YP + Sbjct: 62 GQALLKHAEAMENTALLAQEEMSQ-SISPLGQIRIGVTEGLGSVFLAPRLAQLMRHYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I+ AD AI L +P + +I R L + +A+P YL+ Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRP-SADLVITRLLTRYRLALFASPAYLEQAPPLRD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H I + D + E + P + S ++ Q G G+A Sbjct: 180 RDDLGRHQWIGYVDDLLFSQELMFHHSFCRHP-----QVVFRSTSVVAQQQAAQAGIGLA 234 Query: 243 LLPDYIVKDNPNLVRIMED 261 +LP ++ +P LV ++ + Sbjct: 235 ILPHFMGSRDPLLVPVLPE 253 >gi|83749040|ref|ZP_00946047.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207743067|ref|YP_002259459.1| hypothetical protein RSIPO_01234 [Ralstonia solanacearum IPO1609] gi|83724303|gb|EAP71474.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206594464|emb|CAQ61391.1| hypothetical protein RSIPO_01234 [Ralstonia solanacearum IPO1609] Length = 306 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 131/298 (43%), Gaps = 15/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT Sbjct: 1 MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + ++ +E Q S G+LR+ + + + ++ L FL +P Sbjct: 61 QDGQAFFERSQDLLADMEELQTMFHHSPQALRGRLRVDMPVGVARKIVIPALPAFLDTHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I+L ++ +D+ + DC +R+ + SSLI R L + A+P YL P Sbjct: 121 QLEIELSSTDRRVDLIREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179 Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235 S+ +LD+H L+ T G +P W VD R P L V++ S C Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVP------GWEYVVDGRAAYRPMQGVLTVSTAESYEAAC 233 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ P + LV ++ V YP +++ F N++ Sbjct: 234 QAGLGLIQAPVSGLAPQVARGELVDVLPQYRPAPMQVSLVYPNRRNLPVRVQVFMNWV 291 >gi|241764187|ref|ZP_04762221.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241366464|gb|EER60968.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 297 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 135/284 (47%), Gaps = 21/284 (7%) Query: 1 MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 MS D + L F VAR+ SFT AA QL ++Q ++S I LE +G++L R RG++ Sbjct: 1 MSRDNFSDLLAFIAVARARSFTRAAAQLRVTQPALSYTIRALEERLGVRLLMRSTRGVSP 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLLL 118 TE G +L + + ++E L E +P G +RI T ID +++L L +FL Sbjct: 61 TEAGQRLLDRLAPEFDEIEAEIQSLGELRDEPMGTIRI-TAIDYAIRSILWPKLAKFLPK 119 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP I+++L+ + + +DI+ D +R + + + R + + Y + Sbjct: 120 YPKIKVELVNEYESVDIAARGYDAGVRFGQELAQDMISVRIGPDVRNMVVGSKSYFADRP 179 Query: 179 EPLSIQELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIM 232 P + ++L +H I T+G L + W T + R+ + N+ + Sbjct: 180 VPKTPRDLTEHACINLRTSTYGGL-------YEWEFTKGKRAVNARVDGTVTFNNAYDVF 232 Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMED--VITPSFTVYF 271 + G G+A LP+ +V+ LV ++ED + P F +Y+ Sbjct: 233 EAAKAGFGLAYLPEDMVRPYVAKGQLVSVLEDWCPVWPGFHLYY 276 >gi|221200934|ref|ZP_03573975.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221207130|ref|ZP_03580141.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221173204|gb|EEE05640.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221179506|gb|EEE11912.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 304 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 19/292 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F AAE + ++ +SR I+ LE + I+LF R R + LTE+G + + Sbjct: 14 VFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVALTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + GKLRI + + +L L F+ +P+++I+ I Sbjct: 74 VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188 + D+ MD D A+R +P ++S+LI RKL+ + AAP Y+ P ++L+ Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-KASTLIARKLLDSRIVTVAAPSYVARWGRPAKPEDLEGR 192 Query: 189 -HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 H + F + P+ + F W R RI L VN +++ C+ GSGIA Sbjct: 193 HHRCLEFRN--PETGKPFQWEFHRKR----KRIVVNTQGRLTVNDPGALLNACLAGSGIA 246 Query: 243 ----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + ++ D L+ + + + + +Y Y K +AF +F+ Sbjct: 247 QMLLLGAEPLIADG-RLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFV 297 >gi|16126756|ref|NP_421320.1| LysR family transcriptional regulator [Caulobacter crescentus CB15] gi|221235538|ref|YP_002517975.1| LysR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13424074|gb|AAK24488.1| transcriptional regulator, LysR family [Caulobacter crescentus CB15] gi|220964711|gb|ACL96067.1| transcriptional regulator, LysR family [Caulobacter crescentus NA1000] Length = 292 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 13/274 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F A + SF+ AA +L LS S +SR ++ LE + +L YR R ++LT+ G Sbjct: 4 WDGIDEFVATAEAESFSRAARRLGLSTSGVSRAVATLEERLQTRLLYRTTRRVSLTDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E P G LR+ + G+ + + F+L +P + + Sbjct: 64 AFLARARRLIAERDEALASVGEDDGDPRGLLRMTCSTAYGERFVVPAVNRFMLSHPKLAL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ LD+ DI + D AIR + + S LI ++L + AAP YL P SI Sbjct: 124 EIDLDDAVRDIVSEGFDLAIRFGR-LTDSRLIAKRLASRTRRLCAAPSYLTRAGAPRSIA 182 Query: 185 ELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I D P +R I + NS +++ +LG G+ Sbjct: 183 DLAAHTCILGAADTWP--------FRDGEREIAFKPQGRWRCNSGQAVLDAALLGLGVCQ 234 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 LP++ V + LV ++E V+ YP Sbjct: 235 LPNFYVDAAISDGRLVPLLEANRPEDEGVWAVYP 268 >gi|226945602|ref|YP_002800675.1| LysR family regulatory protein [Azotobacter vinelandii DJ] gi|226720529|gb|ACO79700.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 12/283 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SFT AA L LSQS++S + LET++G +L R++R ++ TE G +L Sbjct: 13 LVAFVAVAREKSFTRAAAHLGLSQSAVSHAVRALETKLGARLLARNSRTVSPTEIGERLL 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ L P G +R+ + +++L LK+FL YP IQ++L Sbjct: 73 QSVAPQLEEIDAEMSALSALRDSPMGTIRVTASDHAIRSVLAARLKKFLPKYPGIQVELF 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 DN +D++ + D +RL + + + R I A Y N P +L Sbjct: 133 ADNGLVDLAAERFDAGVRLGEIVAQDMIAVRIGPDIRFAVVATKGYFANHPLPGKPDDLM 192 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN + +P + W R + L NS + + G G+A +P+ Sbjct: 193 QHNCVNL--RLPTYGGLWAWEFEKAGRQLNVRVNGQLTYNSIYDCLDAAMEGLGVAYVPE 250 Query: 247 -----YIVKDNPNLVRIMEDVITPSFTVY-FCYPEALKNTGKL 283 YI +LV ++ED P ++ Y YP + +G + Sbjct: 251 DMALPYI--RTGHLVSVLED-WCPYWSGYHLYYPSRRQPSGAM 290 >gi|327192433|gb|EGE59390.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 300 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 18/264 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V G F+ AA ++ S++S+ ++ LE +GI+L R R L LT +G Sbjct: 11 EMEVFVSVVERGGFSSAATARRMTPSAVSKLVARLEARLGIRLVNRSTRRLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + E Q SS + +G++RI T+ G ++L + F+ L+P + + Sbjct: 71 YERSIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMTLHPAVTLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + AD AIR P++SSSLI R+L A+P YL EP S+ + Sbjct: 129 IAHTDRVVDLMEERADVAIRA-GPLKSSSLIARQLGATRKLIVASPDYLGRHGEPRSVAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241 L +H I F + +E + R GE P S +QV ++ + G+G+ Sbjct: 188 LRRHCRIGFS--YARAIEGWPM-----RESGETVTIPIPSGIQVADGEAMRHLALSGAGL 240 Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262 A L + V+ + LV ++E+ Sbjct: 241 ARLAAFTVRADIEAGRLVPVLEEA 264 >gi|227823017|ref|YP_002826989.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] gi|227342018|gb|ACP26236.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 299 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 9/270 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF A +G F+ AAE+L+LS+S++ + I+ LE +G++LF+R R +LTE+G + Sbjct: 9 VFVEAAEAGGFSAAAERLNLSRSAVGKTIARLEQRLGVRLFHRTTRAQSLTEEGQLFYDS 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ T + L+ + G+LRI+ + G+ + ++ L +P + + L + Sbjct: 69 CQKALGEIRTAEALLESGRQEIRGRLRISMPVLFGRQCVAPLFRDLLRRHPHLDLDLSFN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R S L+ R + M A+P YL P ++ EL H Sbjct: 129 DRVVDLLDEGFDLAVRNGSSGNDSGLMTRAVAEQRMTVCASPTYLAARGAPQTVGELAAH 188 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + + W V+ E + + L+++ +I G G+A LP + Sbjct: 189 TGVVY----YRGGQQRPWSFPVEGRTSEAILPNTRLRLDDLAAIADAAAEGLGLAWLPCW 244 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274 +V++ LVR++ D F V+ +P Sbjct: 245 LVRERVQRGELVRVLTDRPGLVFKVHAVWP 274 >gi|241666688|ref|YP_002984772.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862145|gb|ACS59810.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 123/288 (42%), Gaps = 17/288 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR + SF AA++L LS S++S + LE +G++L +R R + TE G +L Sbjct: 10 LRALSAIVNHRSFRKAADELGLSPSTLSHMMRSLEANMGVRLLHRTTRSVAATEAGERLV 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + E+ E PSG LR+ T+ + LL + FL YPD+ + L+ Sbjct: 70 TRLTPLFRDFDLALEEVNEFRGHPSGTLRVNTSEIAARVLLDAAVPTFLTCYPDMSLDLV 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 DN+ +D+ D D IRLR+ + + A A+P YL P + L Sbjct: 130 TDNRLVDVVADGFDAGIRLREAVPLDMIAVEFGGDTRFVAVASPAYLAAHPAPQTPDALK 189 Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H I F G L E VD P L ++ + Q G GIA Sbjct: 190 THACIRFRLPSGKLFRWEFEKHGHEIAVDVP------GVLTLDHVELMAQAAAKGLGIAY 243 Query: 244 LPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286 + D + ++ LV +++D P +Y YP L+AF Sbjct: 244 VSDRTARPFLESGALVTVLDDWCPAIPGLCLY--YPGHRHVPQGLRAF 289 >gi|146311748|ref|YP_001176822.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145318624|gb|ABP60771.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 306 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 13/277 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA QL +SQS++S + LE + ++L R R + TE G Sbjct: 5 NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLEARLDVRLLTRTTRSVVPTEAG 64 Query: 64 SKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +L R+T + ++E L++ +P+G +RI+ +L LK F+ YPDI Sbjct: 65 EQLLVRLTPHLV-EIEQELTALRDRRDRPAGNIRISAGEHAMSAVLWPVLKPFMAHYPDI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I++ +DN DI D +RL + I + R + M + Y P + Sbjct: 124 NIEVTVDNGLTDIVDGRFDAGVRLGEQIAKDMIAMRIAPDMRMAVVGSAAYFAQYGVPQT 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 + L+ H I +P + W ++ E R+ L +NS + V G Sbjct: 184 PEALENHRCINM--RLPTLGGLYAW--EFEQNGREMRVRVDGQLTLNSLPQRLDAAVAGL 239 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G+A +P V D + LVR++E PSF Y Y Sbjct: 240 GLAYVPQDTVVDLVADGQLVRVLES-WCPSFEGYHLY 275 >gi|187733277|ref|YP_001881634.1| putative DNA-binding transcriptional regulator [Shigella boydii CDC 3083-94] gi|187430269|gb|ACD09543.1| transcriptional activator AaeR [Shigella boydii CDC 3083-94] Length = 309 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 4/239 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQ---GIFVTNDPMTLVRWLTAGAGIAYVP 240 >gi|299534125|ref|ZP_07047477.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298718034|gb|EFI59039.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 321 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 99/189 (52%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F +V +G FT AA++L +++S++ + ++ LE +G +L R+ R TLT +G Sbjct: 8 EGVSTFVLVVEAGGFTAAAKRLGVTRSAVGKAVARLEARLGSRLLQRNTRTQTLTAEGQI 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L+ + +L ++P G+LR++ GQ + L LYP + I Sbjct: 68 YYERCTRALKELDAAEADLDSGRMEPIGRLRVSVPEGFGQLCVAPILLNLTRLYPQLSID 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D AIR+ S +L R L T H+ A+P YL P ++E Sbjct: 128 LSFGDRTVDLIEEGFDLAIRIGPMQDSGTLSARLLGTQHISIGASPAYLARHGTPGKLEE 187 Query: 186 LDKHNLITF 194 LD H +I++ Sbjct: 188 LDGHAVISY 196 >gi|296115314|ref|ZP_06833953.1| transcriptional regulator protein [Gluconacetobacter hansenii ATCC 23769] gi|295978137|gb|EFG84876.1| transcriptional regulator protein [Gluconacetobacter hansenii ATCC 23769] Length = 298 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 7/247 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F VVA GSFT AA +L SQS++S + LE +G++L R R + LT+ G Sbjct: 5 DLTDLNSFLVVAEEGSFTRAAIRLETSQSAVSNTVRRLEERLGVRLITRTTRKVVLTKAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +++ + +P+G +RI+T+ +++ K + YPDIQ Sbjct: 65 ERLLNSVGPAFSFVDSELTAIANLRDRPAGLVRISTSEFAAHSIVWPAAKRLMTTYPDIQ 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D DI D +RL + I + R + M A A+P YL+ EP S Sbjct: 125 VEISIDATLTDIVDQRFDAGVRLGELIAQDMISVRIGPDVRMVAVASPTYLEGRTEPNSP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 +L +H I P + W ++ E +I NS ++ + G G Sbjct: 185 HDLAEH--ICIAVRAPTRGSIYAW--EFEKDGDELKIKVQGQFTSNSGSLAIKAAIAGLG 240 Query: 241 IALLPDY 247 IA +PD+ Sbjct: 241 IAFVPDF 247 >gi|188532448|ref|YP_001906245.1| putative DNA-binding transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188027490|emb|CAO95337.1| Putative temperature-dependent LysR-family regulator A [Erwinia tasmaniensis Et1/99] Length = 305 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 4/247 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA+Q+ LS S++S+ ++ LE E+ +KL R R L LTE G Sbjct: 7 MSVFTKVVELGSFTAAAQQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGKIYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +L + P G LRI ++ + QNLL KE L YP +++ L+ Sbjct: 67 QGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQQYPGLKVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA HYL P ++ Sbjct: 127 TGIPAPDLIADGLDLVIRVGD-LQDSSLYSRRLGVMPMVVCAAKHYLVQFGTPEKPSDIG 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + + P DF ++ I N +++++ G+GIA +P Sbjct: 186 NHSWLEY-SVRPD--NDFELISPEGTAIRLSPQGRFATNDAQTLIRWLKAGTGIAYVPLM 242 Query: 248 IVKDNPN 254 + D N Sbjct: 243 WIIDEIN 249 >gi|126458495|ref|YP_001076887.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167725129|ref|ZP_02408365.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|217422251|ref|ZP_03453754.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|242312916|ref|ZP_04811933.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|126232263|gb|ABN95676.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|217394482|gb|EEC34501.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|242136155|gb|EES22558.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] Length = 313 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 126/296 (42%), Gaps = 25/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID +S D D AIR P +L L + A AAP YL R P Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYLD--RHPPRAT 185 Query: 185 ELDKHNLITFGDL-----IPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +++ D P+ +E WL A V G PR + N + V G Sbjct: 186 AKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGP--EFNLASLAIAAAVAG 243 Query: 239 SGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ + +V D R++ V P+ C A ++KAF ++ Sbjct: 244 QGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAIC---ARPEDARVKAFVGWL 296 >gi|167572228|ref|ZP_02365102.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 323 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 27/302 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q+ + N+ ID+ D D A+R+R +P Q+++++ R L AP L+ P Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPGLLQQNAPP 184 Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 + +L + + + GD FN +A P G EPR L ++I Sbjct: 185 IVPADLSRFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTI 233 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GIA LP+ + + L +M P+ +Y + + G A R Sbjct: 234 REAVLDGVGIAALPESMYGNALRAGQLSPVMPGWTLPAPQLYAVF---VSRQGMPPAVRA 290 Query: 289 FI 290 F+ Sbjct: 291 FV 292 >gi|89069333|ref|ZP_01156692.1| transcriptional regulator, LysR family protein [Oceanicola granulosus HTCC2516] gi|89045100|gb|EAR51171.1| transcriptional regulator, LysR family protein [Oceanicola granulosus HTCC2516] Length = 295 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 12/287 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW++ R F V A GS + AA L L+Q ++ RQ+ LE E+G+ LF R RGL LT Sbjct: 6 VTFDWNRARAFLVTAEEGSLSAAARALKLTQPTLGRQVEALEAELGVALFERTGRGLRLT 65 Query: 61 EQGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G L R+ + L E+ G++ I+ + LL L Sbjct: 66 AAGHALLDHARLMGDGARALSLAAWGQTEAL---EGEVAISASDADASYLLPPILARLHA 122 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 P I+I++++ N D+S AD A+R +P +S LI RKL YAAP YL+ Sbjct: 123 AEPGIRIEVVVSNDLSDLSRREADIAVRNVRPT-ASDLIARKLRDATARLYAAPAYLERI 181 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + + I I + LA +GE + ++ + + Sbjct: 182 GRPDRPEGFADADFIE----IDGRGSLRSLLAAQGFALGEANFP-YRCRNFAVMWEMVRR 236 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G GI +L D I +P + R +F V+ + + +L+ Sbjct: 237 GMGIGILDDRIGDPDPAVERAAPFFAPVAFPVWLVTHRDIARSRRLR 283 >gi|325122344|gb|ADY81867.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 310 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 13/255 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LR F V + +F++ A + +S S ISR I LE +G +LFYR+ R +T TE Sbjct: 6 SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + Q LQ+ +++PSG +RI + GQ + L YP Sbjct: 66 SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+LI ++ ID + D R+ + SS R T H A+P Y+ Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGT-LTDSSFHARIFGTQKYHLAASPQYIAKYGTLD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 EL++H + + K E N WL V +P E P L N+ S+M + Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPAEEWIHYPLTPLLSSNNAESLMTAAL 237 Query: 237 LGSGIALLPDYIVKD 251 G GI L PD+++ + Sbjct: 238 HGMGIILFPDWLIGE 252 >gi|157372399|ref|YP_001480388.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157324163|gb|ABV43260.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 310 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 17/285 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + VF V G+F AA+ L++++S++ + I+ LE +G+ LF R R TLT Sbjct: 1 MRTDLKGIPVFVAVVECGNFAQAAQDLNITRSAVGKAIARLEERLGVTLFQRTTRNQTLT 60 Query: 61 EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 E+G L+ R+ + + E I L ++ VK G+LRI+ + LGQ + L Sbjct: 61 EEGEILYQQSRIALDCIREAEDV-IHLGKTQVK--GRLRISLPVLLGQRCIAPILLTIAK 117 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP ++++L +++ +++ + D A+R+ + SS L R+L M A+ YLK Sbjct: 118 SYPQLKLELSFNDRQVNLFDEGFDLAVRIGELADSSFLQARRLGQHGMILCASAQYLKTH 177 Query: 178 REPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P ++ EL +H I + G ++ + D RP + L + +++I Sbjct: 178 LVPRTLSELQEHPAIGYQLGGKILNWQLNDMEGREINFRP-----NTVLAADDFVAIAAA 232 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 + G+A LPD++V + +I+ + + F + + EA Sbjct: 233 VISDLGVAWLPDWLVSKEIAQGQIQQILPECTSMKFAISAVWLEA 277 >gi|330992446|ref|ZP_08316394.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] gi|329760645|gb|EGG77141.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] Length = 314 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 5/290 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA GSF AAE + LS+ ++S+ +S LE +G+ LF R++R ++LTE G Sbjct: 6 DLEAWAIFAKVAERGSFARAAEDIQLSKPTVSKAVSRLEQALGVALFNRNSRQMSLTETG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L S + + E + + + ++ PSG +R+A + G L L +FL YP+I Sbjct: 66 RGLLGHASRILAEAEAAETQARGGTLAPSGLIRVAAPMTFGVRHLSPLLPDFLRQYPEID 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + + +D+ D A+R+ + S+L R+L + + A+P Y+ P Sbjct: 126 ITMDYSDALVDLVAGGYDVALRIAS-LADSALRARRLCNVRLVLVASPGYVAQAGHPDDP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + L+ H + + M + A+ R + + L+ ++ + + G G L Sbjct: 185 RALEGHRSFVYTNTTAPGMIRLHERAS-GREYVLSQTARLRSDNAEAFLPALEAGLGFGL 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V + + + R++ +Y P + ++ F +++ Sbjct: 244 FPEFMVWEGLKSGRITRLLPQWEAAPVALYLVTPASTLRPIRVTTFIDYL 293 >gi|300311233|ref|YP_003775325.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074018|gb|ADJ63417.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 315 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 18/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ VF V +GSF+ AA QL + S+ISR I+ LE +G +L R R L L+E G Sbjct: 11 NEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGQD 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +H ++ + + +P G++R++ +G L+ ++ +FL +P + + Sbjct: 71 IHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDFLAAHPKVDVL 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +D+ D D AIR+ L+ R+L+ I A PHYL P Q Sbjct: 131 LRLEDRYMDLIDDEVDLAIRITD-HPPPGLMGRRLMRIDHLLCATPHYLATHGTPAHPQA 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244 L +H+ I G+ D W + ++ + VL GIA L Sbjct: 190 LKEHSCIYLGE----SPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHLGIASL 245 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFC------YPEALKNTGKLKAFRNFI 290 P +I + + +LV+++ SF ++C YP +L AF F+ Sbjct: 246 PYFIARPALEEGSLVQVLPQW---SFRTHYCGELWALYPATRHLPPRLGAFVQFL 297 >gi|270260973|ref|ZP_06189246.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044457|gb|EFA17548.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 304 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 14/279 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++G F+ AAEQL LS+S++ + ++ LE + ++LF R R L+LT++G + Sbjct: 10 IRAFVQAVQAGGFSRAAEQLGLSRSTVGKAVARLEQRLQVRLFQRTTRSLSLTDEGQLFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + +L + P G+LR++ + GQ + L YP + ++ + Sbjct: 70 DDCLKALAALEAAESQLAARARTPEGRLRVSLPVLFGQKWVLPPLLALTDRYPQLHLEAL 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ D++ + D A+R+ P ++++ R+L AAP YL EP ++ EL Sbjct: 130 FSNRASDLAEEGIDLAVRIGSPGDAAAITARQLGEQKQILCAAPIYLARQGEPGAVAELL 189 Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H I G P + D +P R+ ++ +++ G GIA+L Sbjct: 190 QHQAIAMLRDGHSQPWELLDPQGKTQRLQPPARLRLGNME-----AVLSAACAGHGIAML 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNT 280 P ++ D L I+ P + + LK T Sbjct: 245 PRWLAHDALTAGTLREILPGSCGPGLAINVVW---LKGT 280 >gi|270260886|ref|ZP_06189159.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044370|gb|EFA17461.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 297 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 128/296 (43%), Gaps = 32/296 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G FT AA+ L + ++++++ I LE + KLF R R +++T +G + Sbjct: 8 IRVFNRVVETGGFTRAADSLRMPKATVTKLIQNLEDHLQTKLFQRTTRSVSVTPEGECYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + T + +LE + + ES P G LRI + LL L +F+ YP IQI L Sbjct: 68 QRTVKWLAELEQMEGCMTESQSAPQGVLRIDAGGSTARQLLVPALPDFIERYPQIQIDLG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID+ D ADC IR P+ SSLI R+L + A P YL P +L+ Sbjct: 128 VSDRLIDLINDSADCVIR-SGPLADSSLIARRLFELEWVTCATPAYLARYGTPKHPCDLE 186 Query: 188 -----KHNLITFGDLIPKCMEDFNWLATVDR------------PIGEPRISCLQVNSYLS 230 H D I L VDR + E + L Sbjct: 187 LGYPLAHYRHALNDRIQP-------LHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLG 239 Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I+Q + L DN LV ++ D PS +Y YP + KL+ F Sbjct: 240 IIQTFRFMAQPHL-------DNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKLRVF 288 >gi|261823436|ref|YP_003261542.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607449|gb|ACX89935.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 295 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 132/283 (46%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F + GSF AAE L +S +++Q++ LE +G++L R R +LT+ G + + Sbjct: 7 MNTFVKASELGSFAAAAEVLGISPQMVAKQVAWLEASLGVRLLNRTTRRQSLTDIGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E +E V PSG +++ + G +LL + +L YPD QI L Sbjct: 67 ERCKVVLAEAEDADAIAREMQVTPSGIIQVNAPVTWGSHLLAPFITHYLARYPDTQIALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D + + IR+ + + SS++ L + A A+P YL P + L Sbjct: 127 LNDRMVDPIEEGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLVREGVPDTPSSLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H + +G + W+ D E R L N + +++ + G GI L P+ Sbjct: 186 RHASLIYG--VRTAAASCRWVFQKDGKTEEVRPEGRLFANDWNALLHAAIEGYGITLGPE 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++ D LV+++ D P+ V+ P + K+K F Sbjct: 244 VVLRKEIDRGRLVQVLSDYNGPARPVHVMVPVGRRAAVKVKTF 286 >gi|240949139|ref|ZP_04753486.1| putative HTH-type transcriptional regulator [Actinobacillus minor NM305] gi|240296442|gb|EER47078.1| putative HTH-type transcriptional regulator [Actinobacillus minor NM305] Length = 296 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 26/305 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64 + + +F V +GSFT AE+L LS+ ++R ++ +E +L R R ++LT G Sbjct: 5 EAMNIFLTVVETGSFTATAERLDLSRPMVTRAVALVEEWFNARLLQRTTRRVSLTSAGER 64 Query: 65 ------KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 K+ + +E+ + Q ELQ G LRIA+ G L +K+FL Sbjct: 65 AVTHCQKMVDLAAEIEQDILAQQGELQ-------GSLRIASNSSFGSTHLLLAIKDFLQR 117 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P + IQ L ++ +++ + D AIR +P +LI R L T H A+P YL Sbjct: 118 HPKLNIQFQLSDQSVNLIDERIDLAIRFTNQP--DPNLIARPLATCHSLLVASPEYLAQK 175 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + Q+L +H + ++ K + + +R I S N +++ + Sbjct: 176 GVPQTPQDLAEHIYLAHANINRKEWKFYQ----NEREISLELTSQFTTNDTSALLNLTLA 231 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIA+LP Y++ + + LV I+ D P++ +Y Y K ++ +F+ + Sbjct: 232 SGGIAMLPKYLLNEHLASQQLVPILTDWQLPTYQIYALYSSRHKLPLTIRTLVDFLVERF 291 Query: 295 R--DW 297 R +W Sbjct: 292 RGVNW 296 >gi|170721926|ref|YP_001749614.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169759929|gb|ACA73245.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 300 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 26/298 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V +G F A QL + +S +SR+I+ LE +G +L R R L LT G Sbjct: 3 DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62 Query: 64 SK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + LH + + + SS +P G+LR++ + L L + FL LYP + Sbjct: 63 ERYLHHCQAMLLEAEAADEAVASMSS-EPRGRLRVSCPVALAHAFLPDVISRFLELYPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 Q+ ++L N+ +D+ + D A+R+R+ + +L+ R+L M AAP + + REP Sbjct: 122 QLDMVLLNRRVDLISEGIDVALRVRELGDEDPALVTRRLRQAQMQLVAAPGFADHVREPS 181 Query: 182 SIQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 + L + L+ F L P + L EPR++ ++ ++ Sbjct: 182 ELASLPVLGAAEADRLVHFRLLGPNGRQQEIAL--------EPRLA---IDDFVVRNAAV 230 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G LP + + LVR++ D P + YP G L A R +I Sbjct: 231 RAGLGFTALPSMFCEHELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285 >gi|78486341|ref|YP_392266.1| LysR family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78364627|gb|ABB42592.1| transcriptional regulator, LysR family [Thiomicrospira crunogena XCL-2] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 143/293 (48%), Gaps = 11/293 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++VF V +G AAEQL+L++S++SR+++ LE + KL R R +LTE G Sbjct: 5 EDIQVFVRVVEAGGIGKAAEQLNLAKSAVSRRLADLEDRLETKLINRTTRKSSLTEAGQI 64 Query: 66 LHRVTSEVYHKL-ETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + V + E Q+ + +E+S++ G LR+A + G L L F +P++ Sbjct: 65 YYEKALSVLDSVTEMNQMTVSREASLE--GTLRLAVPLSFGLEHLSPALDRFAQEHPNLT 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + ++++DI + D A R+ ++ S++ RK+ I A+P YLK P + Sbjct: 123 LHVDFSDREVDIVEEGFDLAFRITD-LKDSTIQARKIAPIRFVMCASPGYLKKYGTPKTA 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L +H ++ +G K E ++ + ++ S L N+ ++ G GIAL Sbjct: 182 EDLKQHKILRYGS---KGAESWHLIGPDNQTHHLNLPSHLYSNNGSFLLSMAKAGHGIAL 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 P +I + L ++ D P Y YP+ + K +AF +F+ + Sbjct: 239 EPTFIAWEALATGELTPVLTDYRIPIMHAYAVYPQNRFLSQKARAFIDFLVAR 291 >gi|323497561|ref|ZP_08102578.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio sinaloensis DSM 21326] gi|323317310|gb|EGA70304.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio sinaloensis DSM 21326] Length = 294 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 127/278 (45%), Gaps = 15/278 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA G+F AAE +S + + + I LE ++G L +R R TLTE G+ Sbjct: 7 MKVFCFVAEHGNFRQAAEYFAMSPTMVGKHIKHLEIQLGTSLIHRTTRKQTLTEAGNIYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + KP G++++ + G +L L +FL+ YP+I I L Sbjct: 67 HECQRILQDISDMESAIHDIGNKPQGRIKLNAPVTFGSKVLAPLLAQFLMDYPNIHIDLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID AD R+ + + SSL+ R + HM A+P YL N + L Sbjct: 127 LDNTLIDPYEIEADFIFRVGE-LNDSSLVARFIGHYHMTYCASPSYLTNRPWSGDLSSLG 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H+ + F + E L + DR + L N+ + Q + G+GI L P Sbjct: 186 QHDCLGF-----RYRETSEALTSKDRHRDNIK---LMANNGEVLRQAALAGAGIILQPKI 237 Query: 248 IVKDNPNLVRIME------DVITPSFTVYFCYPEALKN 279 +V ++ R++E P VY ++LKN Sbjct: 238 LVDEDIRSGRLIEITTQTHQAAKPIHLVYRDKHQSLKN 275 >gi|283787189|ref|YP_003367054.1| LysR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282950643|emb|CBG90315.1| LysR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 311 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + +GSF+ AA L + + ++++I LE+ + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHTGSFSAAAAALGQTPAFVTKRIQILESALATTLLNRSARGVALTECGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + E+ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTRYQRLVDEVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID++ D D IR+ I I L AAP YLK EP ++QEL Sbjct: 131 LFDRQIDLAQDNIDLDIRINDAI-PDYYIAHLLTKNSRILCAAPAYLKKYSEPKTLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGKEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+ + LVR++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVQPFLASGKLVRVLPEY-AQSANIWAVYREPLYRSVKLRVCVEFL 292 >gi|254502719|ref|ZP_05114870.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222438790|gb|EEE45469.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 311 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 1/190 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA GS + A ++ LS S+ S +++ LE G +LF R R LTE G L Sbjct: 1 MEFFIRVAELGSLSGAGREIGLSPSAASARLTNLEKTFGAQLFARTTRKTALTEAGRVLL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 H+L+ + L+ + P G LRI+ G+ + +L EF LYPD+QI++ Sbjct: 61 DHARSAIHELQQARQALEATQDSPQGALRISCNTFFGRKHILPHLVEFRSLYPDVQIEMD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + D AIR P+ SSL+ R+L A+P YL P + ++L+ Sbjct: 121 ISDRMVDVVQEGYDMAIR-GAPLADSSLLARRLGGNPRALCASPDYLARKGRPKTPEDLN 179 Query: 188 KHNLITFGDL 197 H+ I+ + Sbjct: 180 NHDCISMASV 189 >gi|187924364|ref|YP_001896006.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715558|gb|ACD16782.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 323 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 16/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR +F AAE++ ++Q ++++Q+ LE +G +LF R RGL LT GS Sbjct: 14 NALRAFEAAARHLNFRVAAEEIGVTQGAVAQQVRNLEDVLGHQLFDRVPRGLALTANGSI 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S V L T E+ + L ++TT L L F +P I+++ Sbjct: 74 YF---SSVQRAL-TIIANATEALAHRASSLTVSTTPSFASKWLIPRLATFTDAHPSIEVR 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQ 184 +I D + D D AIR KP L L + ++A +P L + R PL Sbjct: 130 VIADQQLSTFKGDGVDIAIRHGKPPFGKGLAADPLFPVDIYAVCSPS-LADARRPLKKPS 188 Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L +H L+ +L P+ +E N VD G PR S S L+I + G GIAL Sbjct: 189 DLKRHVLLHDSHNLWPEFLEALNEGGHVDASKG-PRFS----QSALAI-DAAISGQGIAL 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + +V+ + L R+ + + S Y YPE +++ ++A R+++ +AR Sbjct: 243 TSEQLVERDLAAGRLCRLFDFALHLSLGYYVVYPEDRRDSETIRAMRDWLITQAR 297 >gi|113866246|ref|YP_724735.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113525022|emb|CAJ91367.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 304 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/302 (25%), Positives = 129/302 (42%), Gaps = 18/302 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V GSF+ AA L ++ S++SR +S LE +G L R R LTE G Sbjct: 7 NAMAVFARVVECGSFSAAALDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTELGQS 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + E P G LR++ + GQ L L L YP + +Q Sbjct: 67 VYAACARMTAAARDVTALAGEHGGTPHGVLRVSAPVSFGQAWLAPRLPALLARYPGLDLQ 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D A+R+ + + + L R L + A+P YL P + + Sbjct: 127 LTLADRMVDLVEEGMDVAVRIAREL-APGLAARPLREVRYRLVASPGYLARHGTPATPAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSG 240 L + G +F + G ++ L +N+ L+IM +G Sbjct: 186 LPAARCLYLG------YGNFGERWAMRHQAGGEKVEVRIPPRLTLNNSLAIMSMVERDAG 239 Query: 241 IALLPDYIVKDNPNLVRIME-----DVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294 I L+PD+ + D + R++ D++ P T Y Y K++AF + + A Sbjct: 240 IGLVPDFSLGDALDQGRVVTVLADWDILEPYIGTAYAVYTPTRHVPPKVRAFVDHLAGTA 299 Query: 295 RD 296 D Sbjct: 300 DD 301 >gi|50119295|ref|YP_048462.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49609821|emb|CAG73255.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 298 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 144/301 (47%), Gaps = 23/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+ F VV +GS T AAEQL + S ISR + LE ++G L +R R L+L+ Sbjct: 1 MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G+ V H +E + ++ +PSG+LRI + Q+++ + EF YP Sbjct: 61 EEGTMFLEHARGVIHAVEHAEEQVLLRHEQPSGRLRINSASAFIQHVIVPLVPEFRRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D+ ID+ + D AIR+ ++ S++ R L + A+P YL+ P Sbjct: 121 KIILELNTDDFIIDLLEQHIDIAIRI-GTLKDSTIHARPLGASKLRIVASPDYLQQHGTP 179 Query: 181 LSIQELDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 +++ L H + F + + ++DF P L ++ + Q Sbjct: 180 ETVESLADHICLGFTQVESLNHWPLRHGLQDFY-----------PITPALLASNGEILRQ 228 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G GI + +++++++ LV I+ +V + S VY Y + ++ F +F Sbjct: 229 LALRGEGIVRMSNFLIREDLAAGRLVPILTEVTVEASLPVYAVYYRNSQLAARITCFLDF 288 Query: 290 I 290 + Sbjct: 289 M 289 >gi|307545492|ref|YP_003897971.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217516|emb|CBV42786.1| transcriptional regulator, LysR-family [Halomonas elongata DSM 2581] Length = 297 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 140/298 (46%), Gaps = 23/298 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + +F + SGSFT AA L + +++ + I +E+ +G++L R R + T +G Sbjct: 4 FEAMTLFVRIVESGSFTKAANGLDIPRATATLAIQRMESRLGVRLLERTTRQVRPTPEGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H + +LE + L+ + P G LR+ + ++ ++EF YP +++ Sbjct: 64 AFHERCVRLLAELEDAEAALKPVADNPDGVLRVEMHGAQARLIVLPRIQEFHRRYPRLEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ +D+ + DCA+R P SSL+ RKL + A+P YL++ P Sbjct: 124 ILTSGDRFVDLVGEGVDCALRSGAP-ADSSLVARKLAEMPQTICASPAYLESAGYPRHPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP---IGEPRISCLQVNSYLSI------MQYC 235 EL KH ++ F F+ VD I + R +V ++++ ++ Sbjct: 183 ELHKHQVVNF----------FSGNNAVDSTLDVIVDGRSRAFEVGGWITVNDASTYVESA 232 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP + V + LV ++ + P+ ++ YP+ + + +++ F ++I Sbjct: 233 RQGCGMIQLPRFHVAPLIERGELVEVLPEWPKPTLPLHAVYPQRRQLSPRVRVFLDWI 290 >gi|296156373|ref|ZP_06839211.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295892972|gb|EFG72752.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 303 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 16/295 (5%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F + + SF+ AAE L L +SS++ I LE E+G L R R L+LT+ Sbjct: 2 DKLQAMTTFVRIVEAQSFSKAAETLSLPRSSVTTTIKSLERELGTTLLRRSTRTLSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ + EL + P G++R +G+ ++ L EF +P I Sbjct: 62 GERYYASCRAILAEIARVEGELSADTASPRGRVRADMPGVIGRAMVLPRLHEFAQRFPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L ++ D+ D DC IR + + SSL R+L + A+P YL EP + Sbjct: 122 ELVLGLSDRPADLIYDGIDCVIRTGE-LADSSLTARRLGELSWITCASPRYLTAHGEPAT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 + L H+ + + + +W V GE +Q VN + +Q + G Sbjct: 181 VGALTDHHAVNY--ISNATGRPLDWRFHVQ---GEDLTIAMQSRFAVNETEAYLQCGLEG 235 Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ L +++ + L ++ + + V YP +G + F ++I Sbjct: 236 LGLIQLSEFVALPYLKSGRLKEVLATARSSAVPVSIVYPHGRNASGATRTFVDWI 290 >gi|326317472|ref|YP_004235144.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374308|gb|ADX46577.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 311 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 17/295 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F V G F A L + +S +SR++S LE ++G++L R R L+LTE G Sbjct: 3 DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSDLEAQLGVRLLQRTTRKLSLTEIG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R V + + E +P G +R++ + L Q +L + FL +P ++ Sbjct: 63 ESYLRHCQAVREAAQAASDAVAEVQTEPRGTVRVSCPVTLAQTVLGELMPIFLERHPQVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ + N+ +D+ + D A+R+R + S S++ ++L A+P L P S Sbjct: 123 VEMQVTNRAVDLVEEGVDVALRVRPNLDDSGSMVVKRLDDARQVLVASPALLARQGTPTS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 + L + + + M+ + L V P G+ + L + L++ + G Sbjct: 183 VAGLARLDSMAM-----SAMDGRSSLRLVG-PEGQEEVVQLTPRYVADDLLTLKFAALAG 236 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +G+ LPDY+ + LVRI+ TP V+ +P G A R F+ Sbjct: 237 TGLCWLPDYMCQAELGEGRLVRILPGWSTPRGVVHAVFP---SRRGLAPAVRRFL 288 >gi|331682823|ref|ZP_08383442.1| putative transcriptional regulator LYSR-type [Escherichia coli H299] gi|331080454|gb|EGI51633.1| putative transcriptional regulator LYSR-type [Escherichia coli H299] Length = 299 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+ LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLVYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|206579208|ref|YP_002237614.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206568266|gb|ACI10042.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 285 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 21/277 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW L F +AR GS + AA++L++ +++SR+I+ LE +G++L R R +LTEQ Sbjct: 1 MDWQDLNCFLALARKGSMSAAAKELNVDHATVSRRITALEASLGLRLTERLPRQTSLTEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V +E+ + I+ + S+ P+ +RI+ + + L+ + F +PDI Sbjct: 61 GKVIASVANEMNRIADRIHIQAKALSLSPAVSIRISASPAVAAQLIAPAIAGFTQNHPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L + +S AD A+RL +P LI R++ T+H YA+ + Sbjct: 121 ALSLAGVSHHAQLSKGEADIAVRLTRPDDPGLLI-RRIGTMHFGLYASHSW--------- 170 Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 QE+ N + + +E NWL + + E R + + ++ Q G Sbjct: 171 -QEIPPENWVFIA--YERSLEHITQQNWLES----LLEGRRIIFRASDLMAQQQAARSGL 223 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPE 275 G+ LP ++ + +L+++ + P ++ YPE Sbjct: 224 GLVTLPCFMGDADSSLLKLTVESRPPVRDIWLVAYPE 260 >gi|126442519|ref|YP_001061616.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126457092|ref|YP_001074555.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134282920|ref|ZP_01769622.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167905434|ref|ZP_02492639.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167913727|ref|ZP_02500818.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|217424464|ref|ZP_03455962.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|226199179|ref|ZP_03794740.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237509820|ref|ZP_04522535.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242314044|ref|ZP_04813061.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254187185|ref|ZP_04893699.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254198985|ref|ZP_04905403.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254263712|ref|ZP_04954577.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254296821|ref|ZP_04964275.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|126222010|gb|ABN85515.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|126230860|gb|ABN94273.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|134245568|gb|EBA45660.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|157806661|gb|EDO83831.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157934867|gb|EDO90537.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|169657157|gb|EDS88551.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|217392388|gb|EEC32412.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|225928778|gb|EEH24804.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|235002025|gb|EEP51449.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242137283|gb|EES23686.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254214714|gb|EET04099.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 330 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 27/298 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE G Sbjct: 16 NDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQL 75 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + + +Q+ P G +R++ + + Q +L L EFL YP++++Q Sbjct: 76 FYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLRRYPEVRVQ 135 Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + N+ ID+ D D A+R+R +P QS++++ R L AP L+ PL+ Sbjct: 136 IRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQNAPPLAPD 195 Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235 +L + + GD FN +A P G EPR+ + ++I + Sbjct: 196 DLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHTHEHEPRLVTADL---MTIREAV 244 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 245 LDGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 299 >gi|325523503|gb|EGD01820.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 297 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 128/274 (46%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L VF VAR SFT AA +L +SQS++S I LE +G++L R R ++ T+ G Sbjct: 5 NFNDLLVFLAVARERSFTRAAAKLGVSQSALSHTIRDLEARLGVRLLTRTTRSVSTTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++E L + KP+G +RI T +++ L L YPDI+ Sbjct: 65 EELLNTAAPRIEEIEAKLASLSDFRDKPAGVVRITATDHAIDSIVWPKLTNVLREYPDIR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +D +I D D IR + + R I M AP YL+ P S Sbjct: 125 LELTVDYGLANIVEDRYDIGIRFGDQVAKDMIAVRISPDIPMAVVGAPSYLEGKSLPKSP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H+ +T K + + W L R I L N+ ++Q V G G+A Sbjct: 185 EDLLNHDCVTLRLTTTKGV--YAWELKKGKREIQARVNGQLTFNTQQQMLQAAVDGFGLA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 LP+ V+ D L +++D P+F Y Y Sbjct: 243 FLPEDAVRPYLDRGELQSVLKD-WCPAFPGYHAY 275 >gi|251789461|ref|YP_003004182.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247538082|gb|ACT06703.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 296 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GS T AA +L +S+S +R I+ LE +G++L +R R L LT G+ + Sbjct: 7 MQVFVAVADLGSLTAAANKLDMSRSMATRYIAALEHWLGVRLLHRSTRSLGLTSVGNDML 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E + +P G +R+A+++ GQ+ L L + YP +LI Sbjct: 67 VRCRQIVVLSEDMAALSGGGNTEPHGVIRVASSVSFGQSYLSQALGRYRTRYPHTTTELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ I + + D A+ + +LI + L A P YL + P++ +L Sbjct: 127 LTDRTIKLVEERIDLAVEVTNS-PDHNLIAKPLGRCASVVCATPDYLAHHAPPVTPNDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC---LQVNSYLSIMQYCVLGSGIAL 243 +HN + L W T R GE R+ + N L ++ G GIA Sbjct: 186 RHNCLNHTRL------GREWRFT-HRETGERHRVMVSGRVVANDTLVLLNAARAGEGIAC 238 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+++V+ D LV ++ D T + +Y CY L+ +F+ Sbjct: 239 LPEFVVRAGLDAGELVPLLGDYQTQALGIYACYMSRRHMPATLRTLLDFL 288 >gi|188532825|ref|YP_001906622.1| LysR-family transcriptional activator [Erwinia tasmaniensis Et1/99] gi|188027867|emb|CAO95724.1| LysR-family transcriptional activator [Erwinia tasmaniensis Et1/99] Length = 292 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 19/285 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +VA GSFT AA + L +SS+S++IS LE +G++L R R L LT G + Sbjct: 10 LFALVAECGSFTAAAARAGLPKSSVSQRISQLEHALGLRLINRTTRQLNLTFAGERYLVH 69 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 E+ E + ++ PSG+LRI + +G LL +F +PD+ +++ + Sbjct: 70 CQEMLQASERAGLVIERLRDNPSGRLRITSPAGIGATLLARVNTDFQQQFPDVTLEVSIS 129 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ D D A+R +P Q SLI R++ A+P YL + + ++L +H Sbjct: 130 DEMCDLVQDGFDVALRTGRP-QDLSLIGRRIGYCQRLLVASPDYLADYQTLAHPRQLSEH 188 Query: 190 NLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244 I L+ + E + WL + + L + C L S GI LL Sbjct: 189 RCIAHRAWNEWLLKRNEEYYRWL-----------LPPTHMTDNLVYARECALSSGGITLL 237 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P ++ + LV+++ + ++ YP N+ L F +F Sbjct: 238 PRFLSCE--KLVQVLPEWEVEGNELWLVYPSRKLNSPALSRFVDF 280 >gi|163854972|ref|YP_001629270.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258700|emb|CAP40999.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 307 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 22/299 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F + G F+ A+ L + +S +SR+IS LE +G++L R R L LT G Sbjct: 3 DLNDLFYFSQIVEHGGFSAASRALDIPKSRLSRRISQLEATLGVRLLQRTTRRLRLTLAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+ + +++ +P G + ++ I + Q +L L EFL +P + Sbjct: 63 ERYLHYCREMTASARAAEDAMRQLQAQPCGPVVVSCPIAIAQQMLAPLLPEFLDAWPSVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +Q++ N+ +D+ + D A+R+R + + + L+ + L A+P YL+ P + Sbjct: 123 VQVLATNRRVDLIREGVDLALRVRTRLDTDAELVVKHLGMASSSIVASPAYLQRHGTPQT 182 Query: 183 IQELDKHNLITFGDLIPKC--------MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 Q+L H ++F + P+ +D + T+ P++ C N ++ + + Sbjct: 183 PQDLAAHTTLSFSE--PQSEVRWPLRNRQDEELVVTL-----RPQLCC---NDFIVLTEA 232 Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V G GI+LLP + LVRI+ D ++PS V+ YP ++A +FI Sbjct: 233 AVRGRGISLLPTVATYEEVRRGQLVRILPDWLSPSGIVHCIYPSRRGMAPAVRALLDFI 291 >gi|120612681|ref|YP_972359.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591145|gb|ABM34585.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 330 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 132/276 (47%), Gaps = 23/276 (8%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R F VAR +F AAE+L L+QS++SRQI LE EVG+ LF RH R + LT G++L R Sbjct: 21 RAFLAVARHLNFRAAAEELSLTQSAVSRQIQALEDEVGVPLFLRHTRAVELTSAGAQLQR 80 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + +L+ + +++++ + S + I T L ++EF PDI I+ + Sbjct: 81 AVAPALERLDASVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRDNPDIDIR--I 136 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184 D D+ + ++ AD + LR + S L ++L + A+P LK+ R P + Sbjct: 137 DASDVSVDLETADVDLALRYAVPGSQLHGAQRLFGEQLAVVASPWLLKSGPPIRRPADVA 196 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238 + LI GD M WL T R + S LQ +L I+Q + G Sbjct: 197 QF---TLIEAGDA--HRMAYLEWL-TWRRWFEQNGQSKLQPKRWLYFNYAHQIVQAALTG 250 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYF 271 G+AL ++ D + +LV ++ S VY+ Sbjct: 251 QGLALARMPLIADSLASGDLVEVLPGYRLDSPLVYW 286 >gi|326387765|ref|ZP_08209371.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207811|gb|EGD58622.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 295 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 28/293 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW+ L F VV R+GS + AA L ++Q ++ R++ LE VG LF R GLT T+ Sbjct: 3 DWEDLHAFSVVLRTGSLSAAARFLGVTQPTMRRRLDALEQSVGAPLFVRSQTGLTPTDAA 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R T + E G +RI + +G +L L +P + Sbjct: 63 RELGRHTGVMAVAAEAFSRAASADGTAVEGVVRITASDVVGAEVLPAVLVPLRAAHPGLI 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L N+ D++ AD A+R+ +P Q ++LI R++ T+ + +A YL+ P S Sbjct: 123 VELDLANRTQDLTRQEADIAVRMVRPAQ-AALIARRIGTVPLGLFAHRSYLRIAGVPASH 181 Query: 184 QELDKHNLI------TFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 +L H LI T+ D + ++F+ ++ +S L+ + Sbjct: 182 ADLAHHTLIGPDRETTYLDFVAGHGLHLRRDNFS----------------IRTDSQLAQL 225 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G GI + + + + +LV +M V P + E L+ +++A Sbjct: 226 SAIRSGLGIGICQVALGRRDRDLVHLMPQVFRPDMETWVVMHEDLRRVRRIRA 278 >gi|302878705|ref|YP_003847269.1| transcriptional regulator, LysR family [Gallionella capsiferriformans ES-2] gi|302581494|gb|ADL55505.1| transcriptional regulator, LysR family [Gallionella capsiferriformans ES-2] Length = 300 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 3/191 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA+ GSFT AA+ L +S++ +R +S LE + +L R R L+LTE G + Sbjct: 7 MRVFVEVAQRGSFTAAADSLDISRAMATRYVSELEQWLNARLLQRSTRRLSLTEAGERCL 66 Query: 68 RVTSEVYH-KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ E T + +++S P G LRI T++ G L + ++L LYP + + + Sbjct: 67 LQCRQILELSGEMTDVSGRDNSA-PKGPLRITTSMSFGMAHLAAAVTDYLKLYPQVSVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ +++ + D AIR+ + +L+ R+L A+P YL+ P S +L Sbjct: 126 LMVDRSVNLIEERIDLAIRISGELD-PNLVTRRLAPCRSVVCASPDYLRRYGTPASPADL 184 Query: 187 DKHNLITFGDL 197 +HN +T+ + Sbjct: 185 TRHNCLTYSNF 195 >gi|154247174|ref|YP_001418132.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161259|gb|ABS68475.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 296 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 17/289 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR+F +AR+G A L L +++ R+++ LE EVG L R R +TEQ Sbjct: 1 MDWDDLRIFLQLARTGRMAGAGRALGLDDTTVGRRVARLEKEVGAPLVARAGRRTVITEQ 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G KL + E+ + + L E+ ++ +G++RI LG L L P + Sbjct: 61 GQKLAQAAEEMESIVLRKIVGLGEADMQVAGRVRIGAPEGLGVGYLAARLAALSAENPKL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + +L+ + ++ D AI L +PI + +KL + Y Y P + Sbjct: 121 ETELVALPRAYSLASREVDIAITLDRPIAGQVSV-KKLTDYTLELYGTQAYFDRRGRPGT 179 Query: 183 IQELDKHNLITFGDLIPKCM----EDFNWL-ATVD-RPIGEPRISCLQVNSYLSIMQYCV 236 EL H F IP+ + DF+ L A V+ P+ QVN+ LS Sbjct: 180 AAELQGH---VFAGYIPELLFTRALDFSTLEAGVEVTPVIRSTSVIAQVNAVLS------ 230 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G+ + +LP ++ +P+L ++E + + + + LK+ +++A Sbjct: 231 -GAALGVLPAFLAAAHPDLEVLLEGAFRLTRSYWVSVHDDLKHLNRVRA 278 >gi|110636066|ref|YP_676274.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110287050|gb|ABG65109.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1] Length = 285 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 8/237 (3%) Query: 29 LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88 ++ +S+SR ++ LE +G +L R +R LTLTE G + V +L + + E Sbjct: 1 MAPASVSRYVNALEDRLGTRLLNRTSRSLTLTEAGEAYLATAASVIEQLAAAETRVAELG 60 Query: 89 VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148 PSG LR+ + I +G + + +FL YPDI + L+L N++I+++ D IRL K Sbjct: 61 KTPSGTLRVHSRIFVGSQFIVPYVPQFLKRYPDINLVLMLSNEEINLAESNVDLDIRLGK 120 Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208 + S LI KL A+P YL S +L +H+ + + I + F Sbjct: 121 -LNDSDLIVSKLAETERCVVASPKYLDAAPTITSPADLSQHSCLVYTKHIGSSVWSF--- 176 Query: 209 ATVDRPIGEPRISCLQVNSY-LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261 D + R+S Y S+ V G G+ALLP++ V ++ LVR+ D Sbjct: 177 INKDGLRSDVRVSGRYTTDYGPSLKTLAVAGFGLALLPEWSVFEDVAAGRLVRLFAD 233 >gi|325121809|gb|ADY81332.1| carbonate dehydratase [Acinetobacter calcoaceticus PHEA-2] Length = 313 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + E+ ++ KP G+LR+ + G + + + EF YP++ ++ Sbjct: 73 ERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YL+ P S ++L Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P D++ L T L ++ ++ GIALLP + Sbjct: 193 DHACLRLVN--PSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALLPMF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 D N L I+ + +P VY P R+FI K R W Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|312797607|ref|YP_004030529.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica HKI 454] gi|312169382|emb|CBW76385.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica HKI 454] Length = 402 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 136/287 (47%), Gaps = 15/287 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA GSF AA + +S + ++R ++ LE+ +G +L R R L+LTE G Sbjct: 24 MRVFVKVADLGSFAKAASMMDMSNAVVTRHVADLESRLGTRLLNRTTRSLSLTESGQVYL 83 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +LE + + + +P G LRI + G + L L + +P + + Sbjct: 84 ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLHSYAQRFPQVIPNVT 143 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++++D+ + D + + + ++S+S++ R+L T + A P Y+ P ++L Sbjct: 144 LVDREVDMVEEGFDVGVVIARNVRSASVVMRRLTTGCITVCATPEYIAKHGVPQRPEDLL 203 Query: 188 KHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H+ ++ +GD + + RP + + N+ + Q +LG+GIA Sbjct: 204 EHHCLSLPADYWGD--ERVFTGPDGQEVRVRP-----TNVMIANNTEMLRQLALLGNGIA 256 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LLP Y++ + L+R++ P + YP K++ F Sbjct: 257 LLPSYLIGRDMAEGRLLRLLPQYHLPRVDINIAYPSRHYLPAKVRTF 303 >gi|259909683|ref|YP_002650039.1| LysR family transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|224965305|emb|CAX56837.1| LysR family transcriptional regulator [Erwinia pyrifoliae Ep1/96] Length = 284 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 126/286 (44%), Gaps = 6/286 (2%) Query: 13 VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72 ++++ SFT AA +L +SQS++S I GLE + +L R R + TE G +L + Sbjct: 1 MISKEKSFTRAAAKLGVSQSALSHSIRGLEERLKTRLLTRTTRSVAATEAGERLIKSVGP 60 Query: 73 VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132 + +E + L E+ SG +RI + L LK FL YPD+ ++L +DN Sbjct: 61 MIDDIEKALLHLTENVGSISGNIRITAGEHALSSTLWPLLKPFLQAYPDVNVELSVDNTL 120 Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192 DI D +RL + I+ + R M A A+P YL P + EL H I Sbjct: 121 TDIVSGRFDAGVRLGESIEKDMVAVRIGPDWRMSAVASPEYLAQYGIPETPYELQNHRCI 180 Query: 193 TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK- 250 +P ++W + + I L N+ S + + G GIA +P+ V+ Sbjct: 181 NM--RLPTLGGLYSWEFSKEGKGIKVKVEGQLIFNNLPSRIDAALSGMGIAYVPEDSVQQ 238 Query: 251 --DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 ++ L ++E+ P Y YP ++T + LK Sbjct: 239 YVEDGRLQHLLEEWCEPFNGYYLYYPSRKQHTAAFSKLIEAVRLKG 284 >gi|171060007|ref|YP_001792356.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170777452|gb|ACB35591.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 314 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 25/257 (9%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + V+ GS+T AA++L +S++++S+ I+ LE G+ L R R + LTE G Sbjct: 10 WSHMHWLTVLGDLGSYTAAAQRLGVSKAAMSQHIADLERAAGVPLVSRTTRSVRLTEAGQ 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T + ++E +++ + P G LR+ + LG+ + L +FL +P+++I Sbjct: 70 QLADATRGAFEQIERGLAGVKDLATTPRGLLRVTAPVALGRQQIVPRLPDFLRAHPEVRI 129 Query: 125 QLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +L+L+++ + ++ + D AIR R P + + L T A+P YL+ P Sbjct: 130 ELVLNDQVLSLAQEGFDLAIRHTARPP---ETHVAWTLTTTRSVLVASPDYLQRRGRPQH 186 Query: 183 IQEL----DKHNLITFGDLIPKCMEDFNW--------LATVDRPIGEPRISCLQVNSYLS 230 EL +H+ + + P+ E W LA V + P L N+ Sbjct: 187 PAELATERGQHDCLHY----PRPGETPTWQFQPRQAALAPVTVAVRGP----LSANNSEV 238 Query: 231 IMQYCVLGSGIALLPDY 247 + + + G GIALLPD+ Sbjct: 239 LREAAIDGLGIALLPDF 255 >gi|319791444|ref|YP_004153084.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593907|gb|ADU34973.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 28/300 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V AR G+ T AA L ++ ++ S + LET++G +LF R R + LT QG L Sbjct: 9 LQVLVHTARGGTLTAAAHALGITPAAASATLKRLETQLGARLFERSTRAMRLTPQGQTLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + + G LR+A DL ++ L EFL L+ +Q+ L Sbjct: 69 DYAVRAFELLDEGESLVTADRGELVGTLRVAAPSDLTRSTLLPWFDEFLALHSGVQLSLS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D D A+R + S L+ R + A+P YL P + Q+L Sbjct: 129 VGDRPLDVMRDEVDVALRY-GALADSRLVARPFAMTNPLLTASPEYLSRHAAPKTPQDLV 187 Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCV 236 HN + F + + ++ W + ++VN S+ ++ V Sbjct: 188 HHNCLIFNRGGRRHRVWRFAQNGQW-------------TEVRVNGNRSVDDASLAREWAV 234 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GI L V+D+ LV++M D T + ++ P +++AF +F+ LK Sbjct: 235 AGYGITLKSALDVRDDVRSGRLVQLMADWQTEPYPLHALLPSGRFVPARVRAFVDFLALK 294 >gi|237808258|ref|YP_002892698.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237500519|gb|ACQ93112.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 298 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 132/273 (48%), Gaps = 10/273 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VVA+ SFT AA +L +SQS++S I GLE + ++L R R ++LTE G + Sbjct: 7 NDLLSFLVVAQESSFTKAAAKLGVSQSALSHSIRGLEERLNLRLLNRTTRSVSLTEAGDR 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + S ++E L E PSG +RI+ QN+L L++FL+ YPDI+++ Sbjct: 67 LRQTLSPRIEEIEEELDALNEEQNGPSGSIRISAPEYAAQNILWPVLEKFLVQYPDIRVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++N DI + D IRL + + + R + M P Y N PL ++ Sbjct: 127 VNIENSFTDIVAERYDAGIRLGEQVAKDMIAVRISPDLKMAVVGTPSYFSNREIPLIPED 186 Query: 186 LDKHNLITFGDLIPKCMED-FNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H I +L P + W +R I L N+ ++ + G G++ Sbjct: 187 LHQHRCI---NLRPSTAGGVYAWEFEKENRNINVRGEGQLIFNTTTQSLKASLAGFGVSY 243 Query: 244 LPDYIVKD---NPNLVRIMEDVIT--PSFTVYF 271 P+ ++K L+ ++ED P F +Y+ Sbjct: 244 APENLIKGYVKEGKLISVLEDWCPTFPGFHLYY 276 >gi|163792499|ref|ZP_02186476.1| transcriptional regulator, LysR family protein [alpha proteobacterium BAL199] gi|159182204|gb|EDP66713.1| transcriptional regulator, LysR family protein [alpha proteobacterium BAL199] Length = 314 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 1/199 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+++R F V A GSF+ AA L ++Q ++ RQ+ LE E+G+ LF R RGLTLT Sbjct: 10 VKFDWNRVRAFLVTAEEGSFSAAARALGMAQPTLGRQVGALEEELGVVLFERVGRGLTLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G +L + + + S G +RI T +L + + P Sbjct: 70 QSGLELVEHARAMADAAASVSLTASGQSQAIEGTVRITATEVTSAFILPAIVTKLRSAQP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++++ N D+ AD AIR +P LI RKL+ YA+ YL+ E Sbjct: 130 AIEVEILATNAVRDLRRREADIAIRAVRPTD-PDLIARKLMIDTAELYASEAYLRRVGEL 188 Query: 181 LSIQELDKHNLITFGDLIP 199 S ++L + F + P Sbjct: 189 SSPEKLSCAEFVGFNENEP 207 >gi|116255385|ref|YP_771218.1| LysR family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260033|emb|CAK03131.1| putative LysR family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 297 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 131/283 (46%), Gaps = 6/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +VAR SFT AA ++ +SQS++S I LE +G++L R R ++LTE G +L Sbjct: 9 LNAFALVARERSFTRAAAKVGVSQSALSHTIRQLEARLGVRLLTRTTRAVSLTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ L KP+G +R++ ++L L++FL YPDI+++LI Sbjct: 69 DGIGPHLDEIDAQVEALSALRDKPAGTIRLSAADYAITHVLWPKLRKFLPQYPDIKVELI 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN DI + D +R+ + + + R + +P Y K P ++L Sbjct: 129 LDNGLTDIVNERYDAGVRMGEHLAKDMISARIGPDFSLAVVGSPSYFKEHGIPSHPKDLV 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 H I F +P + W + + R+ L N+ + ++ + G G+A +P Sbjct: 189 GHTCINF--RLPSSGGLYVWEFEENGQEIKIRVDGQLAFNNIFNALEAALDGFGMAYIPL 246 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 IV+ + L ++++ P Y YP +++ A Sbjct: 247 EIVQPLVNERKLEHVLQEFSPPWDGYYLYYPSRRQSSPAFAAL 289 >gi|82776694|ref|YP_403043.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae Sd197] gi|309788986|ref|ZP_07683581.1| uncharacterized HTH-type transcriptional regulator ycjZ [Shigella dysenteriae 1617] gi|81240842|gb|ABB61552.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae Sd197] gi|308923257|gb|EFP68769.1| uncharacterized HTH-type transcriptional regulator ycjZ [Shigella dysenteriae 1617] Length = 299 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SILGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDACVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|42524310|ref|NP_969690.1| LysR family transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39576519|emb|CAE80683.1| transcriptional regulator, LysR family [Bdellovibrio bacteriovorus HD100] Length = 296 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/295 (23%), Positives = 137/295 (46%), Gaps = 10/295 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA++GSFT AA+ L++S+ ++R + LE VG L R R ++LT G Sbjct: 7 IQVFLEVAKTGSFTKAADNLNMSRPMVTRYVGILEDWVGTSLLQRTTRNVSLTSSGEMYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + + +P G +R+A+++ + + + F+ YP I I + Sbjct: 67 EKCRQIQDIAFDIEVNSKSALDEPKGVIRVASSVSFAMSQYRELIAPFMERYPQISIDFV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +++ D AIR+ + ++ ++L H A P YLK P +++L Sbjct: 127 VTDRQVNLIESKVDFAIRITNSL-DPGIVSKQLGVCHSCLVATPKYLKAKGTPRKVEDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 KH L+ + L DR S N L +++ GI ++P Y Sbjct: 186 KHRLMAHDHFKNSKLS----LRKGDRQEELSFTSAFSSNETLLLLEAATQDLGITMMPRY 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDW 297 +V+D + LV ++ D P F ++ + +++ F +++ +K ++W Sbjct: 242 LVQDHLKSKRLVEVLSDWSLPEFGLHIVFTNRKFIAPQVRLFIDYLSAEIKKQNW 296 >gi|158423033|ref|YP_001524325.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329922|dbj|BAF87407.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 304 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF A S + AAE L +S +++SR +S LE + +L R+ R L LTE G + Sbjct: 6 QIEVFLKTAELRSLSRAAEALGMSNAAVSRHLSALEERLSARLVERNTRRLWLTEAGQEF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + +L + + E ++ P G LR+ +++ L L E LYP + + + Sbjct: 66 YQRSGALLAELAEAEEAVNEHTLSPQGLLRVTSSLSFATIYLAPMLPELRRLYPKLSVHI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ +D D AIR R ++++ R+L + A+P YL+ P +L Sbjct: 126 AVANRYLDFIEAGIDVAIRTRLHEPDTNIVVRRLGRMRRVLAASPAYLEERGRPKEPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 +H+++ + + F+ + RI + L N I Q + G GI + P Sbjct: 186 ARHDMLVYN----LAQDPFSLRLSKGEAERTVRITAALDCNDGQVIRQAAIAGLGILVQP 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 YIV+++ LV ++ D P T+ Y + K++ F +F+ Sbjct: 242 LYIVQEDLEAGRLVPVLLDWQLPMLTMNIAYQNRERLPAKIRVFTDFL 289 >gi|152985296|ref|YP_001348050.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960454|gb|ABR82479.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF VA +G F AA Q++LS +++S+ ++ LE + ++L R R ++LTE G Sbjct: 7 LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGVVYR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE L PSG LR++ + L L + FL YPD++++L+ Sbjct: 67 QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D A+R + S L+ R L+ + AAP YL+ +PL + L Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLRQHGQPLRPEALR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F W D I P +V+S L++ + G G++L+P Sbjct: 187 EHECIRFS----LSGHADRWTFRKDHECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ LV ++ D ++ YP + + GK + F +F+ Sbjct: 243 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 288 >gi|152984328|ref|YP_001346809.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959486|gb|ABR81511.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 7/259 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L + ++++R I +E ++G +LF +H G LT Sbjct: 2 FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + Q E+ + S+ P G++RI T LG L L + + YP + Sbjct: 62 GQALLKHAEAMENTALLAQEEMSQ-SISPLGQIRIGVTEGLGSVFLAPRLAQLMRQYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I+ AD AI L +P + +I R L + +A+P YL+ Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRP-GADLVITRLLTRYRLALFASPAYLEQAPPLRD 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H I + D + E + P + S ++ Q G G+A Sbjct: 180 RDDLGRHQWIGYVDDLLFSQELMFHHSFCRHP-----QVVFRSTSVVAQQQAAQAGIGLA 234 Query: 243 LLPDYIVKDNPNLVRIMED 261 +LP ++ +P LV ++ + Sbjct: 235 ILPHFMGSRDPLLVPVLPE 253 >gi|73539475|ref|YP_299842.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72122812|gb|AAZ64998.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 307 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 8/284 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++ + GS A +L+L+ ++SR++S LE +G++L R R ++LT +G Sbjct: 6 QLAFFCLLVKQGSLAATARELNLTPPAVSRRLSQLEARLGVRLLNRTTRRISLTNEGEVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + S P G LR+ + G++ + + F YPD+++QL Sbjct: 66 FANAMRILGDIDEMERLVSSSREAPKGLLRVNAPLGFGRSYIGPAISGFSKTYPDVEVQL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I + + D +IR + S LI +++ A+P YL++ EPL +L Sbjct: 126 QLTDRPISLPDEAIDVSIRF-GDLPDSRLIAKRIAPNRRLLCASPAYLRSAGEPLLPHDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 +H I L NW T + ++ L N + + + G GI + Sbjct: 185 TQHACIV---LRQNETAYGNWRLTRGKQTETIKVHGKLSTNDGEVALNWALEGHGILMRA 241 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ V + LV+++ D TP +Y Y E L + K+ F Sbjct: 242 EWDVAKFLRSGRLVQVLTDYATPPADIYAVYLERLNQSAKVSYF 285 >gi|254451804|ref|ZP_05065241.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198266210|gb|EDY90480.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 18/287 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++ F +VA GS + AA +L SQ ++ RQI LE ++ LF R ARGL LT+ G Sbjct: 9 DWSLIQAFLMVAEEGSLSGAARKLGASQPTLGRQIKTLEHQLSASLFTRQARGLELTQTG 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + + S + SG +RI ++ L + + LL P I Sbjct: 69 AALVAPARAMRDAMGQITLTAAGQSARMSGTVRITASVMTSMYHLPDIIAKIRLLEPAIS 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+++ + ++ AD A+R+ +P Q L+ + + I + A+ YL Sbjct: 129 IEVVASDDTRNLLYREADFAVRMYRPTQ-LDLVTQHIGNIPLTICASKSYLARMGPLQGA 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP------RISCLQVNSYLSIMQYCVL 237 +L H+ + + D P ++ F R IG ++ C +Y ++++ Sbjct: 188 ADLMHHDFVGY-DTNPALIDGF-------RDIGIEVTRDFFKVRCDDHATYWNLVRA--- 236 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G GI I KD+ +++ I V PS V+ EA+++T +++ Sbjct: 237 GCGIGFAQGSIAKDDLDVMAIDAGVAIPSLPVWLVAHEAMRHTPRIR 283 >gi|262167200|ref|ZP_06034912.1| putative transcriptional regulator LysR family [Vibrio cholerae RC27] gi|262189930|ref|ZP_06048245.1| putative transcriptional regulator LysR family [Vibrio cholerae CT 5369-93] gi|262024344|gb|EEY43033.1| putative transcriptional regulator LysR family [Vibrio cholerae RC27] gi|262034189|gb|EEY52614.1| putative transcriptional regulator LysR family [Vibrio cholerae CT 5369-93] gi|327483760|gb|AEA78167.1| Cyn operon transcriptional activator [Vibrio cholerae LMA3894-4] Length = 245 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 9/246 (3%) Query: 49 LFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLL 108 + RHAR LTLTE G + ++ S + +L + E+ + SG++RI+ +L + ++ Sbjct: 1 MLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMM 60 Query: 109 QGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168 F+ YPDI I+L++ N+ D+ D R+ P + SSLI RK+ + Sbjct: 61 MPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILV 119 Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228 A+P YL + +P +EL +H L+ L+ + + V+ G + S L V Sbjct: 120 ASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNV--- 176 Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + C G GI L+PD +++ ++ +LV+++ D + +Y Y K++ Sbjct: 177 --VRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRL 234 Query: 286 FRNFIF 291 F +F+ Sbjct: 235 FIDFVI 240 >gi|298294351|ref|YP_003696290.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296930862|gb|ADH91671.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 316 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 7/286 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R+ VA + AA + ++ S++ R++ +E +G LF RH G LT G Sbjct: 10 WDDFRLIKAVADAKGLPAAAAAMGVNHSTVFRRLKQIEEALGAVLFERHRTGYALTPAGE 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + + ++ +L PSG+LR+ T L +LL L F YP++++ Sbjct: 70 EMVALANRLDEEITAVGRKLAGREPAPSGELRVTTPDSLLIHLLMPMLATFRERYPEVRL 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L N+ +++S AD A+R +L+ R++ I Y E +S + Sbjct: 130 DMVLSNQALNLSKRDADVAVRATDN-PPENLVGRRVARIAWALYGRAADFPAPGE-VSPE 187 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 ELD HN ++ GD + + V + P ++NS L + + G GI + Sbjct: 188 ELDAHNWVSLGD----SLGSLKTVKFVQENVA-PEKVAYKINSVLGLAEAVEAGIGIGHI 242 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I P+LVR+ + ++ L+++ +++AF +F+ Sbjct: 243 PCFIGDARPSLVRLGPANDDYAADLWLLTHPDLRHSPRVRAFLDFL 288 >gi|261863724|gb|ACY01335.1| unknown [Erwinia pyrifoliae] gi|283479763|emb|CAY75679.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia pyrifoliae DSM 12163] Length = 297 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 126/286 (44%), Gaps = 6/286 (2%) Query: 13 VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72 ++++ SFT AA +L +SQS++S I GLE + +L R R + TE G +L + Sbjct: 14 MISKEKSFTRAAAKLGVSQSALSHSIRGLEERLKTRLLTRTTRSVAATEAGERLIKSVGP 73 Query: 73 VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132 + +E + L E+ SG +RI + L LK FL YPD+ ++L +DN Sbjct: 74 MIDDIEKALLHLTENVGSISGNIRITAGEHALSSTLWPLLKPFLQAYPDVNVELSVDNTL 133 Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192 DI D +RL + I+ + R M A A+P YL P + EL H I Sbjct: 134 TDIVSGRFDAGVRLGESIEKDMVAVRIGPDWRMSAVASPEYLAQYGIPETPYELQNHRCI 193 Query: 193 TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK- 250 +P ++W + + I L N+ S + + G GIA +P+ V+ Sbjct: 194 NM--RLPTLGGLYSWEFSKEGKGIKVKVEGQLIFNNLPSRIDAALSGMGIAYVPEDSVQQ 251 Query: 251 --DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 ++ L ++E+ P Y YP ++T + LK Sbjct: 252 YVEDGRLQHLLEEWCEPFNGYYLYYPSRKQHTAAFSKLIEAVRLKG 297 >gi|206580258|ref|YP_002236581.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206569316|gb|ACI11092.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 303 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V GSFT AA +L LS + + I+ LE+++ +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ + P+G LR++ G +++ FL +P + Sbjct: 62 GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIR+ + I L+ R L M AAP YL P + Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L H C+ W A ++ + R + L+ N ++ Q Sbjct: 181 PEDLADH----------LCLSHTVWTARNEWRLPGIEGEVRWKRDAILRCNDGYALRQAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G+G+ + P+ ++ D + +LVR++E V+ + + + KL F Sbjct: 231 IAGAGLLMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284 >gi|27381292|ref|NP_772821.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354459|dbj|BAC51446.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 7/247 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ SF AA L + S++SR+IS LE E+G++L R R + LTE G Sbjct: 5 NDMALFVEVVKARSFRGAAATLDMPNSTLSRRISLLEKEIGLRLLNRTTRRVELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E +PSG LR++ +D L + EF YP I + Sbjct: 65 YFERCKRIVDEARLAHEQLGEMLARPSGLLRVSLPVDFANTYLAPLITEFAQHYPGIDFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ + +S +I R L +H + YA+P YL+ EP + Sbjct: 125 FDLTPRRVDLVSEPYDLAIRIGES-AASHMIARPLARLHGNLYASPRYLELNGEPREPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + + + N TV+ I +NS + + L GIA P Sbjct: 184 LARHQCLCQTRVSTWTLH--NGTQTVEAEIA----GRFHLNSIGMLRRLATLDMGIAFTP 237 Query: 246 DYIVKDN 252 IV D Sbjct: 238 QEIVADE 244 >gi|115522738|ref|YP_779649.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516685|gb|ABJ04669.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisA53] Length = 307 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 9/249 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ L +F V SF AA +L +S++++S+ ++ LET +G +LF R +R L LT+ G Sbjct: 5 DFEALAIFAKVVELRSFAAAAAELAVSKATVSKAVTRLETRLGARLFNRTSRRLALTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + E + E S P G +R+A + G ++ L FL YP+I Sbjct: 65 HRLAERAARLLADGELAENEALAQSGTPRGLVRLAVPMTFGVKVIAPLLPAFLDKYPEIS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L + +D+ D D IR+ + SSL+ R+L + + A+ YL+ P Sbjct: 125 IDLHASDAMVDLIGDGFDAGIRIAS-LPDSSLLARRLCAMPRYTVASKTYLERHGRPTHP 183 Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + + L P N RP G L+VN+ ++M + G G Sbjct: 184 MHLAQHRCLGYAYLSTPNAWHYSNAAGEQVAVRPAGP-----LRVNNGEALMPALLAGLG 238 Query: 241 IALLPDYIV 249 IA LP++I+ Sbjct: 239 IADLPEFII 247 >gi|331685176|ref|ZP_08385762.1| putative transcriptional regulator LYSR-type [Escherichia coli H299] gi|331077547|gb|EGI48759.1| putative transcriptional regulator LYSR-type [Escherichia coli H299] Length = 323 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++GI+L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGIQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL +P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLA 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V+ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVRKALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|296156985|ref|ZP_06839822.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295892871|gb|EFG72652.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 363 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 24/298 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F A GS T AA++L + S+ SR ++ LE ++ I LF R RGL+LTE G + Sbjct: 66 VRTFVRAAELGSLTRAAQELSIKTSTASRHLNELEADLRIALFNRSTRGLSLTEGGKVFY 125 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 SEV +L+ + + PSG LR+ + G+ + ++ EF+ Y DI ++ I Sbjct: 126 ARVSEVLTQLKDARDATSSLNQSPSGVLRVTLPVSFGRKHVVPHIGEFMDRYRDIDVEAI 185 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +++ D IR+ +Q SSL+ R+L A AAP Y K C P++ L Sbjct: 186 FTDDILNLIESQIDLGIRI-GALQDSSLMARRLAPHREVACAAPAYAKACGVPVTPGALK 244 Query: 188 KHNLITFGDLI-------PKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H + F + P+ W ATV+ L ++ +++ + G Sbjct: 245 DHACLMFSRTVGNVWYVRPRNDTAAEWQKATVN--------GRLTLDDTDALLAVALAGR 296 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP+++ + + L I+ D S +++ YP + K+++F +F+ Sbjct: 297 GIALLPNWLAYEPLGDGRLTNILPDWEIRSSREEASIWAVYPRKKTVSSKVRSFIDFL 354 >gi|223041455|ref|ZP_03611658.1| putative HTH-type transcriptional regulator [Actinobacillus minor 202] gi|223017713|gb|EEF16120.1| putative HTH-type transcriptional regulator [Actinobacillus minor 202] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 10/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+QL +S + S+ ++ LE + ++L +R R +T TE G Sbjct: 5 NAISLFCKVIETQSFTQAAQQLDISLAMASKLVAQLEEHLNVRLLHRTTRKITPTEAGLL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++L+ + S +GKL + +D G + +L +FL YP I++ Sbjct: 65 YYQRCQPILNELKEADDSINNISENLTGKLSFSLPMDFGSRFVAPHLGKFLEAYPHIELH 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ +D+ + D +R+ + ++ SS++ +K+ H A+P YL P SIQ+ Sbjct: 125 LEFNDRRVDVVSEGFDLVLRVGQ-LEDSSIVAKKIAESHQIIVASPEYLATHGTPRSIQD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 LD+H + + + DF++ R + RI N+ S++Q GI +P Sbjct: 184 LDQHTCLLYEN---HQTWDFSFGEETLRYKAKGRIYS---NNGYSLVQIAKDHQGIINIP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 +V L+ I+E + + YP + K+K F +F+ ++ K Sbjct: 238 KCLVTKELKTSELIPILEHLDQRKLDISLLYPNRRYLSPKVKVFIDFLTTLMKEQK 293 >gi|53717318|ref|YP_106101.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|124382129|ref|YP_001025893.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|254176620|ref|ZP_04883278.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254359047|ref|ZP_04975319.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52423288|gb|AAU46858.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|148028234|gb|EDK86194.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|160697662|gb|EDP87632.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|261826665|gb|ABM98992.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] Length = 323 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 27/302 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EFL YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q+ + N+ ID+ D D A+R+R +P QS++++ R L AP L+ P Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 L+ +L + + GD FN +A P G EPR L ++I Sbjct: 185 LAPDDLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHTHEHEPR---LVTADLMTI 233 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GIA LP+ + + L +M P +Y + + G A R Sbjct: 234 REAVLDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRA 290 Query: 289 FI 290 F+ Sbjct: 291 FV 292 >gi|71909442|ref|YP_287029.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71849063|gb|AAZ48559.1| transcriptional regulator, LysR family [Dechloromonas aromatica RCB] Length = 335 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 110/208 (52%), Gaps = 3/208 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L L +++++ I LE + ++L R R ++LT G+ Sbjct: 4 FQAMQVFTRVVDANSFTRAADMLGLPRATVTTIIQNLEALLQVRLLNRTTRRISLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++E T+ ++ + P G+LRI +G+ +L L EF YP++++ Sbjct: 64 AYYEHCARILGEVEETESSFRDVAAGPKGRLRIDVPSPIGRLVLIPRLCEFRARYPEVEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ + DC IR +Q S+L+ R++ I + A P YL+ P SI Sbjct: 124 VIGMGDRMVDLVREAVDCVIRAGD-LQDSTLVARRIGAIKLITCATPDYLERYGVPRSID 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD 212 +L +H + + + +F+W VD Sbjct: 183 DLQQHVAVHY--FSHRTGRNFDWDFIVD 208 >gi|172061627|ref|YP_001809279.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994144|gb|ACB65063.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 295 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 128/249 (51%), Gaps = 15/249 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SF AA +L++S SS +R I G+E +G +L R R L+LT+ G H Sbjct: 7 MRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAG---H 63 Query: 68 RVTSEVYHKLETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +++ H +E +I+ E ++ +P G L+IA + G ++L + F L+P I Sbjct: 64 LYLAQIRHVVE--EIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ +D+ + D + L + I +++L+ R L + AAP Y++ P+ Sbjct: 122 VPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIH 181 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H +TF D + M F+ T R P S N L I + + G GI Sbjct: 182 PHDLASHACLTFHADFAGEYMS-FDHEPT--RVAVRPNKSASSNNIGL-IRNWALSGMGI 237 Query: 242 ALLPDYIVK 250 A+LPD++V+ Sbjct: 238 AVLPDFLVE 246 >gi|330958769|gb|EGH59029.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. maculicola str. ES4326] Length = 290 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 128/285 (44%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +E+ G +L +R R L LT G Sbjct: 4 RVFIAINERGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTASGQVTLL 63 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L Q +L + +L YP + L + Sbjct: 64 RCQQLLELADAVPLAADTQVDEPRGMLRIACSQSLAQAVLAPAVTAYLQRYPGTSVDLHI 123 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + +LI R L + AAP YL P QEL+ Sbjct: 124 GNETVDLVSERIDLAIRITNQLD-PNLIARPLGHCNSVVCAAPAYLAAHGTPSRPQELNS 182 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F + P+ P L N + +++ V G+GIAL P + Sbjct: 183 HNCLTY-SYFGKSLWEFTHQQS---PLSVPVGGNLSGNDSVVLLEAAVAGAGIALQPVHS 238 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ +M D + ++ Y + L+ +F+ Sbjct: 239 AAPLIASGQLIALMPDYQPKAMGIHAIYTSRHHQSATLRTMLDFL 283 >gi|319790788|ref|YP_004152428.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593251|gb|ADU34317.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 303 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 12/293 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A +G FT AA ++ +++SR IS LE +G++LF R R + LT+ G Sbjct: 13 IELFCLAAETGGFTSAALAAGVTPAAVSRSISRLEKRLGLRLFVRTTRSVRLTDAGRSYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E+ +PSG LRI+ G + + L F YPDI++ + Sbjct: 73 AQCRQALAQLAEAEREVMGQQAQPSGTLRISVPTTYGHHRILPMLPAFRERYPDIRLHVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + D A+R+R S+LI R L + A YLK P + +L Sbjct: 133 LSNRNIDFVEEGYDMAVRVRAQ-PDSTLIARHLEDAALVVVATRKYLKAAGTPRTPDDLA 191 Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H I F +P +WL DR + + SC + L + G+G+ Sbjct: 192 AHECIQFE--LPSSGRRISWLFKEEGQDREVLADSAYSC--SDDVLGGVTLAKSGAGLFQ 247 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++V+ + +LV +++ S YP+ +++ F +F+ + Sbjct: 248 TYRFVVQKELADGSLVEVLKPFAGRSRPYTLLYPDGRHAPLRMRVFIDFLMAQ 300 >gi|190893177|ref|YP_001979719.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190698456|gb|ACE92541.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|327190977|gb|EGE58031.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 303 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 6/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L + +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE L S PSG+LR+ + ++ L +F YPDI++ L Sbjct: 67 ERAAQLISELEELDGSLSNSQSLPSGRLRVEMSGAFADAIVVPALCDFYQRYPDIRLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D ++ DCA+R P SLI R++ + + A+P Y++ P ++L+ Sbjct: 127 VSDRTVDYLVENVDCALRAGTP-ADQSLIARRVSEMELITCASPSYIQKFGMPERPEDLE 185 Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + F + + PR VN + + + G G+A +P Sbjct: 186 AAHYSVNYFRAQNNRTLPFEFRRDNETIETNPRY-IASVNDSRTYLTAALTGLGVAQVPT 244 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LVR++ + +Y YP + K++ F +++ Sbjct: 245 FMAREPMRRGELVRVLPEWRRDPIPLYVVYPPNRHLSNKVRVFVDWL 291 >gi|170695012|ref|ZP_02886161.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170140110|gb|EDT08289.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 333 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 8/286 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF + + SF+ AA L+L ++S S I LE + ++L YR R + LT +G+ Sbjct: 5 FQAMVVFTRIVETNSFSRAAVSLNLPRASASNIIKSLEAHLRVRLLYRTTRRINLTAEGA 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ LE T+ L + G LRI +G+ ++ + EF +YP + + Sbjct: 65 QYYERCVQILSDLEETEYALTSGASGIHGTLRINLPPAIGRTVIVPRIHEFCSMYPQVDL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ ++ +D+ + DCAIR+ ++ SSLI R+ + M A+P Y++ PL I Sbjct: 125 RIGFSDRRVDLVQEGIDCAIRV-GLLEDSSLIARQFGHVEMLTSASPRYIQRHGCPLEID 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243 +L +H + + + DFN++ E RI S + C L G G+ Sbjct: 184 DLPRHFAVHLLSGSGRNL-DFNFVRNGH--AAEIRIPGTVAVSDVDAYIRCGLDGMGLIQ 240 Query: 244 LPDYIVKDNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAF 286 +P ++V+++ ++E + V YP + K++AF Sbjct: 241 VPAFMVREHLRSGELLEVICHHRPQPIPVSAIYPANRHLSSKVRAF 286 >gi|163738462|ref|ZP_02145877.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis BS107] gi|161388383|gb|EDQ12737.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis BS107] Length = 292 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 16/286 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW+ +R F A +GS + A +L L+Q ++SRQ++ LE ++G+ LF R RGL LT G Sbjct: 5 DWNHIRAFLATAETGSLSAGARKLGLTQPTLSRQVAALEADLGVLLFERLGRGLALTSAG 64 Query: 64 SKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L H T + + Q +++ G +RI + + +L L + P Sbjct: 65 HDLLNHSRTMGAAAEALSLAATGQAQAIE--GTVRITASDVMSAYVLPPALHQLRRRAPR 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I ++ N D+ AD AIR +P Q LI R + H H YAA YL+ P Sbjct: 123 LTIDVVAANDIRDLMRREADIAIRHVRPDQ-PELITRLVRESHAHFYAASSYLERRGRPQ 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLG 238 S +++ +H+ + F DL ++A P+G + ++ S L+ + G Sbjct: 182 SPEDMSRHDFVGFADL----ERSIEFMA----PLGIHLTAQNFRIKSTSGLASWELVKQG 233 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GI + + P + R++ + +F ++ L + +++ Sbjct: 234 FGICPMMTAVADPTPGIERLLPGLDPITFPIWLTTHRELHTSRRIR 279 >gi|238896505|ref|YP_002921243.1| putative transcription regulator protein [Klebsiella pneumoniae NTUH-K2044] gi|238548825|dbj|BAH65176.1| probable transcription regulator protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 303 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 24/294 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V GSFT AA +L LS + + I+ LE+++ +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ + P+G LR++ G +++ FL +P + Sbjct: 62 GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIR+ + I L+ R L M AAP YL P Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGR 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L H C+ W A V+ + R + L+ N ++ Q Sbjct: 181 PEDLADH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAVLRCNDGYALRQAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G+G+ + P+ ++ D + +LVR++E V+ + + + KL F Sbjct: 231 IAGAGLLMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284 >gi|254475720|ref|ZP_05089106.1| transcriptional regulator, LysR family [Ruegeria sp. R11] gi|214029963|gb|EEB70798.1| transcriptional regulator, LysR family [Ruegeria sp. R11] Length = 308 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 120/255 (47%), Gaps = 8/255 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ D +R F V GS + A L +S + S +IS LE +G++LF R R LT T Sbjct: 1 MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG + V ++ + ++ + P G L +A + LG+ LL + EFL YP Sbjct: 60 EQGRAFYDGAVAVLDAVDEAEAKVMHLTETPRGTLFVAAPLGLGRRLLAPQVPEFLDRYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I ++L L ++ +D++ + D A L +P + S+L RK+ AAP Y+ P Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCPRVLCAAPDYIARRGMP 178 Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L D H+ + P E F W L T D P + + + + + Sbjct: 179 QDGSALLRDGHDCLNL--RYPGASE-FQWLLQTADGPRRFAVSGRYECDDGDVLTDWALA 235 Query: 238 GSGIALLPDYIVKDN 252 G GI L P++ V D+ Sbjct: 236 GEGIILKPEFEVADH 250 >gi|115525808|ref|YP_782719.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519755|gb|ABJ07739.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisA53] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 1/192 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA F AA +L LS S+++R ++ LE VG +L R R +TLT+ G++ Sbjct: 5 DAMTAFVAVADLQGFAPAARKLRLSPSAVTRLVAALEERVGARLLQRTTRSVTLTDVGAR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E + Q +PSG+L ++ G+ + + +L YP++ + Sbjct: 65 YLERARRILADVEEAEHSAQAERTRPSGRLVVSAPFGFGRVHVTPLISAWLKRYPEVAGE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +++ D DCAIR+ + SSL+ R + + A+P YL P + Q Sbjct: 125 LRLTDRVVNLVEDGVDCAIRIGH-LPDSSLVARAVGDMRRIVVASPAYLAARGTPKTPQA 183 Query: 186 LDKHNLITFGDL 197 L H+ I FG L Sbjct: 184 LAGHDTIRFGAL 195 >gi|115352045|ref|YP_773884.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282033|gb|ABI87550.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 305 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 14/293 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF V SF+ AA LHL+ ++S+QI+ LE +G LF R+ R L +T +G Sbjct: 10 DDLAVFVHVVERQSFSAAARDLHLAPKTVSKQIARLEQALGTTLFERNTRNLRITGEGRA 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + LE Q S + SG +R+ G+ + + +F L+P + Sbjct: 70 IAERARVALAVLEEVQELATGGSQELSGTIRLTAPTPFGRKFVAPAIHDFCRLHPRVGFD 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ D+ D AIR+ + + S L+ R++ A+P YLK P +E Sbjct: 130 LRLSDQVQDLYSGDLDLAIRMGE-LADSRLVARRVADNRRILAASPDYLKAHGRPTQPEE 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L++HN + F P ++ L ++PI C L +C+ G GI+L Sbjct: 189 LERHNCLVFA--YPGLLQSIWPLRRGRREKPIAVSGTLCSDNGDVLHA--WCLAGLGISL 244 Query: 244 LPDYIVKD---NPNLVRIMED-VITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291 + + + + LVR++ D TPS ++ E + +L AF +F+F Sbjct: 245 RETWDIHEELRDGRLVRVLPDWEATPSKISIVRARREPVPR--RLTAFSDFLF 295 >gi|107022523|ref|YP_620850.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689472|ref|YP_835095.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170732778|ref|YP_001764725.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206559824|ref|YP_002230588.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|105892712|gb|ABF75877.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116647561|gb|ABK08202.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|169816020|gb|ACA90603.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] gi|198035865|emb|CAR51756.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 313 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+P Y+++ P +L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVESHGVPQRPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H + G + P D LA + PI P +VN ++ G G+ Sbjct: 186 AQH--VCLGMVAPGFHFDEWALAGPNGDEVVPITAP---PFRVNVAEALAVAVREGMGVG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + ++VR+M + + +Y YP K++ + +F+ Sbjct: 241 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291 >gi|254788443|ref|YP_003075872.1| LysR family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686953|gb|ACR14217.1| transcriptional regulator, LysR family [Teredinibacter turnerae T7901] Length = 302 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 132/297 (44%), Gaps = 11/297 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +LR F V +G FT AA +LH + +S+S I +ET++G +LF R R L LTEQG++ Sbjct: 10 ELRQFVAVVETGGFTAAAHRLHQTTASVSLAIKRMETQLGARLFERSTRNLQLTEQGAQF 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++V+ L+ L+ S G L IA DL LL L+EF +P++ + L Sbjct: 70 YQVSKRTLSVLQEGVESLRVSQDAVRGPLVIAAPGDLALTLLGRMLREFQHKFPEVALDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R P+ S L+ R+L T A+P YL P S+ +L Sbjct: 130 RVSDSVSGVVGEGIDLALRY-GPLPDSELVARELHTGRRLLCASPDYLNRAGVPRSLADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGSGIALLP 245 +H + F D W + ++C V ++ + + + G G+ Sbjct: 189 SEHRCLCFRR---SGRADTQWQFMQEGERFAVTVNCALVTDNSAVARDWALAGEGLVYKS 245 Query: 246 DYIVKDNPNLVRIM------EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 V D+ R+ + + TP F VY + +L AF F + D Sbjct: 246 GLDVYDDIAAGRLRTVLTDYQGIQTPLFAVYAGAQYQPRRLRELLAFLQAAFARIPD 302 >gi|209550132|ref|YP_002282049.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535888|gb|ACI55823.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 23/262 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V G FT AA ++ S++S+ ++ LE +G +L R R L LT +G Sbjct: 11 EMEVFVSVVERGGFTAAALARRMTPSAVSKLVARLEQRLGARLVNRSTRKLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + E Q SS + SG++RI T+ G ++L + F+ L+P + + Sbjct: 71 YERSIAILADI--AEAERQASSGEQASGRIRINTSGSFGNHVLAPLMPAFMALHPAVTLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + AD AIR P+++SSLI RKL A+P YL+ EP ++ + Sbjct: 129 ISHTDRIVDLMEERADVAIRA-GPLKNSSLIARKLGATGKIIVASPDYLRRHGEPRTVAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD----RPIGE----PRISCLQVNSYLSIMQYCVL 237 L +H C F++ V+ R GE P +QV ++ + Sbjct: 188 LRRH-----------CRIGFSYARAVEGWPLREDGETITIPITPGVQVGDGEAMRHLALS 236 Query: 238 GSGIALLPDYIVKDNPNLVRIM 259 G+G+A L + V+ + + R+M Sbjct: 237 GAGLARLAAFTVRADIDAGRLM 258 >gi|53721400|ref|YP_110385.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76818985|ref|YP_337081.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|167722441|ref|ZP_02405677.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167741423|ref|ZP_02414197.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167818606|ref|ZP_02450286.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167826983|ref|ZP_02458454.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167848498|ref|ZP_02474006.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167897050|ref|ZP_02484452.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167921668|ref|ZP_02508759.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|254185299|ref|ZP_04891887.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|52211814|emb|CAH37813.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76583458|gb|ABA52932.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] gi|184209534|gb|EDU06577.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 323 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 27/302 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EFL YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q+ + N+ ID+ D D A+R+R +P QS++++ R L AP L+ P Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 L+ +L + + GD FN +A P G EPR L ++I Sbjct: 185 LAPDDLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHTHEHEPR---LVTADLMTI 233 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GIA LP+ + + L +M P +Y + + G A R Sbjct: 234 REAVLDGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRA 290 Query: 289 FI 290 F+ Sbjct: 291 FV 292 >gi|13472623|ref|NP_104190.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023369|dbj|BAB49976.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 139/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R SE+ ++++ ++ESS G+++++ + +L +F +PDI + + Sbjct: 66 YRRASEIVREVDSLADAVRESSGDVRGRIKLSAPRTFADAPIGQSLIDFAKQHPDIVLDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D A+R+ + +++SSLI R+L + A+P + P Q+L Sbjct: 126 QLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSVKLCASPELIAKHGMPTRPQDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + + ++ + + + ++VNS ++ + G G +LPD Sbjct: 185 GHMPCIV--DTNGRGLNNWAFKGDNNDQLSVAVAGPIEVNSPMAARAAALSGLGFCILPD 242 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I + LV ++D I ++ YP K++ F +F+ Sbjct: 243 FIASPDLKSGQLVTALDDRILSGGGIFAVYPHRRYLPAKVRVFVDFL 289 >gi|254239425|ref|ZP_04932747.1| hypothetical protein PA2G_00038 [Pseudomonas aeruginosa 2192] gi|126192803|gb|EAZ56866.1| hypothetical protein PA2G_00038 [Pseudomonas aeruginosa 2192] Length = 304 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D L F V+ GSFT AAE+L S+ +S++I LE ++G+ L +R R L+LT G Sbjct: 3 DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + E + + + G++R+ + LG+ L L++F +P ++ Sbjct: 63 AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQECHPLLR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L N D+ + D AIR Q + L+ R L + A+P YL EP Sbjct: 123 VELDLYNGLRDLVGEGFDLAIR-SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 EL + + L WL + R++ +++ S+++ L G+GIA Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRHHRLERVRVAGFLASNHYSLLKKAALAGTGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LP Y+V D + L ++ D T S ++ +P Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHP 272 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075802|gb|ADJ65201.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 139/293 (47%), Gaps = 13/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + +F VA GS + AAE L LS ++ SR ++ LE +G +L R R L L+ G Sbjct: 4 WSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSRAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R +++ + ++ +S PSG LRI +++ + L F YP++++ Sbjct: 64 DFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPEVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++I N+ +D+ D AIR R+ +++ R+L T AAP YL P ++ Sbjct: 124 EVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPRTLD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L +H+L+ + ++ N L R G R S +Q N I + G G Sbjct: 184 DLAQHDLLVYSH-----AKEPNRLHLSGRD-GSQRTLEIKSLMQSNDGQIIRAAALEGLG 237 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + P+YI+ D+ LV ++++ P ++ Y +++ F +F+ Sbjct: 238 ILIQPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFL 290 >gi|184158220|ref|YP_001846559.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332875771|ref|ZP_08443570.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|183209814|gb|ACC57212.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|322508541|gb|ADX03995.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323518158|gb|ADX92539.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332736035|gb|EGJ67063.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 310 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 13/255 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LR F V + +F++ A + +S S ISR I LE +G +LFYR+ R +T TE Sbjct: 6 SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + Q LQ+ +++PSG +RI + GQ + L YP Sbjct: 66 SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+LI ++ ID + D R+ + SS R T H A+P Y+ Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYIAKYGTLD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 EL++H + + K E N WL V +P E P L N+ S+M + Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237 Query: 237 LGSGIALLPDYIVKD 251 G GI L PD+++ + Sbjct: 238 HGMGIVLFPDWLIGE 252 >gi|167589838|ref|ZP_02382226.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 297 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 21/298 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQ+ L + ++S + LE + I+L R R + LT +G+ + Sbjct: 1 MRIFARVAHLGSFTKAAEQMQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ + +++ P G +R+ N + + F YPD++I + Sbjct: 61 ERCARLLADLDDVETLFEDAGASPRGVIRVDLPERFALNKVIPAIPSFHARYPDLRIVMS 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S +L Sbjct: 121 TTDRFVDLIADGIDCAVRV-GALSDTSLVARRIGELAQVNCASPAYLARHGTPRSPDDLP 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 +H + G + + +W D GE S + VNS + + CV G G+ Sbjct: 180 EH--VAVGYFSTRTGRELDW-EYADMDTGEMHAVKMRSVVSVNSSQAYLACCVAGLGLIQ 236 Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P D + D LV ++ + V +P G+ A R IF+ DW Sbjct: 237 APRDGLDAPLADG-TLVEVLPEWNAAPLPVSVVFPH-----GRHLAPRVRIFV---DW 285 >gi|34496171|ref|NP_900386.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34330287|gb|AAQ58392.2| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 313 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 13/293 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F +AR+GSFT AA+ L +S +S ++ LE E+G L R R + LTE G + Sbjct: 5 DNLLAFDALARAGSFTAAADLLDCHKSLVSARVKELEREMGAALVLRTTRRVALTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + L ++ + E+ G L ++TT L Q++L L E L+P +Q+ Sbjct: 65 LRPHAARLRETLSQARMAVDETQSDIEGPLTVSTTSSLAQHVLGPALSELAALHPGLQLS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L ++N+ D D D +R + + L+ R + YA+P YL R P Sbjct: 125 LEVNNRLQDPVADVLDFCLRSARSHTVHDDRLVARLAGYASENLYASPAYL--ARHPAIR 182 Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q D H L+ ++ LA ++ + +P + +N Y + G GI Sbjct: 183 QPADLAAHRLLVMESEQRGGLK----LARGEQLLSQPVGALFYLNDYPLRTHLALAGHGI 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +L DY V+ + L R++ + + +Y +P T K + F +F+ Sbjct: 239 TMLADYAVQSHLRDGELARVLPEWHCDYWPIYLVHPFRAPLTRKYQTFIDFVL 291 >gi|134291820|ref|YP_001115589.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135009|gb|ABO59334.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 298 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 25/284 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR GSF AA ++++SR++S LE + ++LF R +RG+TLT++G L+ T Sbjct: 9 FNLVARHGSFGEAARAAGRPKATLSRRVSELENSLALRLFERGSRGVTLTQEGRALYERT 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L + + +P G+LRI+ + Q + + F L YP++++++ D+ Sbjct: 69 GALLAELADSAAAIASGGERPRGRLRISAPMLFSQLAMGKLVATFALKYPEVRLEVTTDD 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSIQELD 187 + +D+ + D IR+ P ++LI R + + A P + P ++ D Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDATLIGRVFLRDRLAVVATPALSRPGDGAAAPAVVRTAD 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +L T D+I P G RI+ +++S + + LG G A L Sbjct: 188 --DLRTAWDVI--------------GPAGPARIAFEPVARLSSLVMVRDTVRLGLGAACL 231 Query: 245 PDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286 P +V + ++ DV P ++ YP + ++ AF Sbjct: 232 PVSLVSGDLAAGTLVSWGDVPGPDIALWALYPSRRLLSARVSAF 275 >gi|261821648|ref|YP_003259754.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261605661|gb|ACX88147.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 4/176 (2%) Query: 5 WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +D+L AR+G S+T AA L +S S+IS+ I LE +G+ LF R R L LT Sbjct: 7 FDRLTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEKRLGVTLFTRTTRSLVLTA 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +LH + E + + + +P+G LRIA ++ G +++ L +F L+P Sbjct: 67 EGRELHERALRLLRDAEEFEQIAKRTHAEPTGTLRIAASLPTGVHMIAPVLPQFCALHPK 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 + I L L ++ + I + D AIR+ + S+L+ R+L + YA+P YL +C Sbjct: 127 VTIDLRLSDRVVSIVDENIDIAIRI-GDLADSNLLSRRLPPYQIGCYASPEYLASC 181 >gi|148252976|ref|YP_001237561.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405149|gb|ABQ33655.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 307 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 10/289 (3%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 V +GSF+ A + +S+++++RQI+ LE G++L +R R L+LTE G L + V Sbjct: 13 VTETGSFSAVARERDVSKAAVTRQIAFLEEHFGVRLLHRTTRKLSLTEDGRTLLDLARPV 72 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 +ET + L S P G +R+ + + L L L P +Q++LI++++ Sbjct: 73 LEGVETMEATLGRQSTSPVGLVRVGIMV-AASHFLAPRLPTLLASNPGLQVELIVNDRFG 131 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ D D A+R + I S++ R++ AAP Y++ P + EL +H I Sbjct: 132 DMIEDRLDLAMRAGE-ITDVSVVARRIGIAARVVVAAPRYIEARGHPSTPVELGRHTCIV 190 Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252 D+ P + W E R+S ++ N + G GIA LP V D+ Sbjct: 191 H-DVGP---DSDMWTFGGSHGAEEVRVSGSIRANDGAVVHLAARAGYGIAFLPLVQVVDD 246 Query: 253 ---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 LVR++ D +P + Y + + FI + R + Sbjct: 247 LRSGALVRVLGDRPSPGLPLSLTYSSRRHLAPRTRVVMEFIIEQVRQMR 295 >gi|264679961|ref|YP_003279870.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210476|gb|ACY34574.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 291 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 134/274 (48%), Gaps = 11/274 (4%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 SF A L +S S++ + ++ LE ++G++LF+R R + LT++GS H + +L Sbjct: 18 SFAEAGRALGISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQEGSLFHERCRRILDELH 77 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + +Q ++ P G+LR++ +G L L EF YP++++ L ++ +D+ Sbjct: 78 DARAAMQAAAEAPRGRLRVSLPT-IGYRFLLPVLPEFQARYPEVELDLDFNDHLVDVVEA 136 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D IR + S L+ R+L A+P YL PL+ +L H+ + + L Sbjct: 137 GLDVVIR-SGELADSRLVARRLGPFRFILAASPAYLSKRGVPLTPPDLAGHSSLRYRFLN 195 Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255 +E++ PI L N+ +++ V G G+A +PD++ +D L Sbjct: 196 SGKLEEWMLPGLPAMPI------ALVCNNMEAMLGAAVSGLGLAYMPDFLARDALARGEL 249 Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +++ + +T S +P + + + K++AF +F Sbjct: 250 QQVLAEQLTHSGQFSALWPSSRQLSPKVRAFVDF 283 >gi|163742128|ref|ZP_02149516.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161384458|gb|EDQ08839.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] Length = 292 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 16/286 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW+ +R F A +GS + A +L L+Q ++SRQ++ LE ++G+ LF R RGL LT G Sbjct: 5 DWNHIRAFLATAETGSLSAGARKLGLTQPTLSRQVAALEADLGVLLFERLGRGLALTSAG 64 Query: 64 SKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L H T + + Q +++ G +RI + + +L L + P Sbjct: 65 HDLLNHSRTMGAAAEALSLAATGQAQAIE--GTVRITASDVMSAYVLPPALHQLRRRAPR 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I ++ N D+ AD AIR +P Q LI R + H H YAA YL+ P Sbjct: 123 LTIDVVAANDIRDLMRREADIAIRHVRPDQ-PELITRLVRESHAHFYAASSYLERRGRPQ 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLG 238 S +++ +H+ + F DL ++A P+G + ++ S L+ + G Sbjct: 182 SPEDMSRHDFVGFADL----ERSIEFMA----PLGIHLTAQNFRIKSTSGLASWELVKQG 233 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GI + + P + R++ + +F ++ L + +++ Sbjct: 234 FGICPMMTAVADPTPGIERLLPGLDPITFPIWLTTHRELHTSRRIR 279 >gi|187928087|ref|YP_001898574.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|187724977|gb|ACD26142.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 298 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 150/304 (49%), Gaps = 21/304 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V +GS T AAE+L + S +SR + LE ++ L R R L+LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAERLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + ++ + ++ +P+G+LR+ + +++ + +F YP Sbjct: 61 DEGATFLAQARSILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++L ++ ID+ + D AIR+ ++ S+L R L T + A+P YLK P Sbjct: 121 QIELELNTNDLIIDLLEEDTDVAIRI-GTLRDSTLRARLLGTRRLRVLASPAYLKAHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + EL KH L+ F + P+ + + DR EP L+ +S ++ Q + G+ Sbjct: 180 RHVDELQKHALLGF--VQPESLNQWPLRGPYGDRLRIEP---TLKASSGETLRQLALQGA 234 Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291 GI L D++ ++ +L+++++D V+ P VY+ +NT F+ F Sbjct: 235 GIVCLADFMTAEDRRAGDLMQVLQDATVEVLQPIHAVYY------RNTQLASRIACFLDF 288 Query: 292 LKAR 295 L+AR Sbjct: 289 LEAR 292 >gi|330969872|gb|EGH69938.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 303 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/306 (26%), Positives = 136/306 (44%), Gaps = 13/306 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+FD + + +F V RSGSF AA L + +++SR++ LE ++ +L R R L LT Sbjct: 1 MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60 Query: 61 EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + G + R S V +E + +L +P G +RIA D + FL Y Sbjct: 61 QAGEDFYGRCVSAVDGVMEAAE-QLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178 P +Q++ +L + D+ D D A R P+Q S + R+L+ H A+P Y+ Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 P S+ L H ++ W L + + E I+ N+ ++ + + Sbjct: 179 LPDSLHSLHGHYCVSAAHRGGVTA----WRLLGPEAKMHEVHIASRFNANTAQALRKATL 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GIALLP +++ + LV ++ S ++ YP + AF + K Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294 Query: 294 ARDWKF 299 RD F Sbjct: 295 LRDKAF 300 >gi|194444827|ref|YP_002042855.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403490|gb|ACF63712.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275 >gi|78067284|ref|YP_370053.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77968029|gb|ABB09409.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 311 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 10/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R+F VA GSF AA L + ++++S + LET +G +L +R R + LT G+ Sbjct: 5 DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTADGTL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + G+L + + + ++ L YP +Q+ Sbjct: 65 LLERGRRLLSEADELDRLFRGRDRDVIGRLTVDVPSRIARRMVAPALPSLFHRYPKLQLS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DCAIR+ + + SSL+ R L + A+P YL+ C P Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LAESSLVVRPLGQFTLINCASPDYLRECGVPEHPDA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H G + P + +W D +G P S + VN+ + + C+ G G+ Sbjct: 184 L-AHGHWAIGYVSPTTGRELDWEYCADGERHTLGLP--SRVIVNNAETYIASCIAGMGLI 240 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P + V+ D+ LV +M D V YP + +L AF Sbjct: 241 QIPRFDVQHLLDSGALVDVMPDHRAAPMDVSAVYPHRRHRSRRLNAF 287 >gi|317494124|ref|ZP_07952540.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917897|gb|EFV39240.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 308 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 142/289 (49%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + R GSF+ AAE L + + ++++I LE G KL R ARG+ LT+ G + + Sbjct: 16 LQVLVEIVRCGSFSAAAESLGQTPAFVTKRIQILENIFGTKLLNRSARGVALTDSGKQCY 75 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ +L ++ +P+G +RI + G++ + + + + LYP++QI Sbjct: 76 EQGLNILTQLQKLMDDLGQTKTQPAGMVRIGCSFGFGRSHIAPAITQLMQLYPELQIHFE 135 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+S D D IR+ I + I R L A+P Y + P ++ EL Sbjct: 136 LFDRQIDLSRDNIDIDIRINDEI-PDNYIARLLAKNKRILCASPKYFEKRNPPQTLTELL 194 Query: 188 KHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 +H+ LI K + W + +IS L NS I+++ + G GI + Sbjct: 195 EHDC-----LITKERDSTAGIWELECEHEKKTVKISGHLSSNSGEIILRWALEGKGIMMR 249 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ V ++ L+R++ + + S ++ Y + L + KL+ +F+ Sbjct: 250 SEWDVVPFLNSGKLIRVLPEY-SQSANIWAVYQKPLYQSAKLRVCVDFL 297 >gi|163855650|ref|YP_001629948.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163259378|emb|CAP41678.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 328 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 136/299 (45%), Gaps = 28/299 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V +GSF+ A QL + S+ISR ++ LE +G +L R R L L+E G Sbjct: 12 EMAVFVKVVETGSFSETARQLGATPSAISRSVARLEKALGTRLLQRTTRKLRLSEGG--- 68 Query: 67 HRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 H V + + Q L+ S S +P G +R++ +G+ ++ ++ +FL YP + Sbjct: 69 HEVHARCLDMVSAAQAVLEVSGQFSPEPQGLVRVSVPKAVGRFVIHPHIPDFLARYPKVD 128 Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL L+++ +D+ D D AIR+ +P S L+ R+LV I A P YL N P Sbjct: 129 VQLQLNDRYVDLIDDEVDLAIRITDRP--SPGLMGRRLVDIDHMLCATPEYLANRGMPAH 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVL 237 +L H + G+ D W G+ R+S VN + + + Sbjct: 187 PHDLKAHTCVFLGEE----PGDSRWKFLR----GDKRVSVSVHGRYAVNHTGARLDAVLH 238 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC------YPEALKNTGKLKAFRNFI 290 GI LP + + +I++ + F +C YP KL AF NF+ Sbjct: 239 HLGIGSLPYFTARHALQQGQIVQVLPEWEFKTNYCGEAWILYPPNRHLPPKLSAFINFM 297 >gi|126446435|ref|YP_001077982.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|238562568|ref|ZP_00440194.2| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|251767019|ref|ZP_02265687.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254200964|ref|ZP_04907329.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254204928|ref|ZP_04911281.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|126239289|gb|ABO02401.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|147748576|gb|EDK55651.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147754514|gb|EDK61578.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|238522345|gb|EEP85790.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|243064166|gb|EES46352.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] Length = 330 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 27/298 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE G Sbjct: 16 NDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQL 75 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + + +Q+ P G +R++ + + Q +L L EFL YP++++Q Sbjct: 76 FYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLRRYPEVRVQ 135 Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + N+ ID+ D D A+R+R +P QS++++ R L AP L+ PL+ Sbjct: 136 IRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQNAPPLAPD 195 Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235 +L + + GD FN +A P G EPR+ + ++I + Sbjct: 196 DLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHTHEHEPRLVTADL---MTIREAV 244 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 245 LDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 299 >gi|78066385|ref|YP_369154.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967130|gb|ABB08510.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 15/257 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + R F + SG T A+ L + +S++S ++ LE +G++L R +R L++T+ Sbjct: 2 LDLNDFRYFVRIVESGGLTAASRNLDIPKSTVSHRLQQLEAALGVRLINRTSRSLSVTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + E + ++E V+P G +R T + ++ L +F+ YP I Sbjct: 62 GQLFYSHAVTMLERAEVAENAVRERLVEPIGTIRFTTAVATSLYAMRQILPDFIKRYPKI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + ++ DI D A+R P+ S+L+QRKL +A+P YL +P+ Sbjct: 122 DVIEHVSDEQTDIVGGNFDLALRAHNGPLSDSALVQRKLAPAPWFLFASPDYLDRRGQPV 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQYC 235 + EL H+ + + + F W V P+ +PR++ N +++ Q Sbjct: 182 APDELAGHDSL----FVTRHHLPFAWKLKHPSQGEVSVPL-KPRLAG---NDLVTLKQAA 233 Query: 236 VLGSGIALLPDYIVKDN 252 G G+ LP Y+ +D Sbjct: 234 QDGLGVVALPGYVCRDE 250 >gi|317492343|ref|ZP_07950772.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919682|gb|EFV41012.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 298 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 141/298 (47%), Gaps = 13/298 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 +RVF V GS + AAE+L+LS++ +SR ++ LE +G +L +R R +LT G + L Sbjct: 7 MRVFVCVVEQGSLSRAAEKLNLSRAMVSRYLADLEKWIGGRLLHRTTRSQSLTSAGEEVL 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + + E QI + + P G LRI ++ L Q L + ++L P QI + Sbjct: 67 ARCKALLLLSDEIEQI-VDNNQQIPRGLLRITSSQSLIQAFLTDAVCDYLTSNPPAQIDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 K +++ + D AIR+ + S+LI R+L T + A+P+Y + P I++L Sbjct: 126 CRQEKTLNLVDERIDLAIRITNQL-DSNLIARRLGTCYSVMCASPNYAERHPLPQKIEQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 KHN +T + W T + P L N + + G GI+LLP Sbjct: 185 SKHNCLTH-----EHYSHHQWGFTYHGNSVVVPVSGNLSANCATVLTSATLRGFGISLLP 239 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDWKF 299 Y+V ++ L+ ++ D + +Y Y L+ F +F+ + A D +F Sbjct: 240 RYLVNQLLEDGQLLEVLPDYQPETLGIYGVYTSRQFMPTTLRVFLDFLVSRFASDPRF 297 >gi|226366625|ref|YP_002784408.1| LysR family transcriptional regulator [Rhodococcus opacus B4] gi|226245115|dbj|BAH55463.1| putative LysR family transcriptional regulator [Rhodococcus opacus B4] Length = 298 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 6/256 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F D LR+F VAR G T AA+ L ++ +++SR I+ LE V +LF R + G TLT+ Sbjct: 2 FSADDLRLFLEVARRGRLTEAAKYLQINHTTVSRHITRLERAVENRLFDRTSEGWTLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + + Q + +G +R+ G LL L +PD+ Sbjct: 62 GLRLLAHAETIESAMRVAQEDCLSRDSSLTGHVRVIAPDGFGAYLLLPGLVGLQRQHPDL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ N+ ++ D A+ + +P Q+ ++ +KL + YA+ YL + Sbjct: 122 TMEIVTANRHASLTPREFDLAVTIERP-QARAVTVQKLANYTLGFYASSDYLASHPPVEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I++L KH LI + D FN L V P + RI Q N+ +Q GIA Sbjct: 181 IEDLYKHVLIWYVDTALDHTT-FNLLYEV-LPNAKARI---QTNNIAGFIQAAEADLGIA 235 Query: 243 LLPDYIVKDNPNLVRI 258 LLP +I NP L R+ Sbjct: 236 LLPSFIADCNPRLQRL 251 >gi|330879631|gb|EGH13780.1| LysR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 297 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VAR SFT AA +L ++ S++S + LE +G++L R R + TE G + Sbjct: 7 NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGEQ 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +L+ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + AP Y + PL Q+ Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEKHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +P + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPISLARQHIESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289 >gi|319787311|ref|YP_004146786.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317465823|gb|ADV27555.1| transcriptional regulator, LysR family [Pseudoxanthomonas suwonensis 11-1] Length = 329 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 140/299 (46%), Gaps = 24/299 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F +V G F A L + +S +SR+IS LET++G++L R R +T+ G Sbjct: 3 DLNDLYYFAMVVEHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++R + + + + + S +P G +R++ + + Q L L +FL YP ++ Sbjct: 63 MSVYRHAQTMLTEAQAAREVVDRLSAEPRGLVRVSVPVAIAQQQLPKLLPKFLEQYPKVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL ++N+ +D+ + D AIR+R + SL+ R I A+P YL P Sbjct: 123 LQLHVNNRRVDLINEGFDVAIRVRTRLDDDGSLVMRSFGQIQELMVASPKYLDRAGRPQD 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--------PRISCLQVNSYLSIMQY 234 +L H ++ + ++ + + P GE PR++ LS+++ Sbjct: 183 PSDLASHLTLSMHE------DEAHQRWELHGPNGEVRRVDNLQPRVAGFDFPLLLSMVKD 236 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 G GI +LP+ + + VR E +V+ P +++ C+ G L A R FI Sbjct: 237 ---GFGITMLPETVCAEA---VRNGELEVVLPEWSLPQGICHAVFASRRGLLPAVRVFI 289 >gi|158421708|ref|YP_001523000.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158328597|dbj|BAF86082.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 311 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 17/281 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + L +F + +G + A +L LS +S+++ LE +G +LF R R +TLT Sbjct: 1 MIGNLGDLEIFARIVTAGGLSAAGRELGLSPPVVSKRVQRLEERLGTRLFQRTTRKVTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + +E + +L S + G LR++ G+ + +L L P Sbjct: 61 EAGQGFYDRVVAILASVEEAESQLARRSSEARGLLRVSAPTSFGRLHIAPHLGPLLDANP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L L + +DI D D AIR+ + SSL+ R+L +H A P YL P Sbjct: 121 ELTVDLELSDAFVDIVGDGFDIAIRIAD-LTDSSLVARRLAPVHRVLCATPAYLARAGMP 179 Query: 181 LSIQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L H L+ T G +D L D P+ + S L+ NS + + + G Sbjct: 180 KTFADLADHVLLATHG-------QDPWRLQGPDGPVTQRVHSPLRTNSNEVVREAVLAGV 232 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYP 274 GIAL + V P L V+ P++ VY YP Sbjct: 233 GIALRSTWDV--GPELNSGALQVVLPAYRASHRVGVYAVYP 271 >gi|146342431|ref|YP_001207479.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195237|emb|CAL79262.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 307 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 11/249 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA GS + A +L + QS+ISR + LE +G+ L R R +TLT++GS+ Sbjct: 10 NMRSFVRVAERGSLSAVARELGVGQSTISRHLQELEEAIGVPLLSRTTRRVTLTDEGSRY 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E E + + SG +RI+ T G + + F YPDI I L Sbjct: 70 YANCVQILRLVEQAGDEARGARGAASGTIRISCTAAFGILHITRLVFAFQDRYPDIAIDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ + D A+RL P+ SSL R L H A+P YL P + QEL Sbjct: 130 NLTDERIDLVREGVDIALRL-APLTDSSLKLRSLGYSHRLLVASPDYLAKRGTPRTPQEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242 H+ I + + + L + P GE P C + N L + + + G GI Sbjct: 189 IGHDGIRMTN-----VAGSDVLVVIG-PGGERHEVPFRGCFRTNHGLGVREAVLAGRGIG 242 Query: 243 LLPDYIVKD 251 ++V D Sbjct: 243 GSHAWLVHD 251 >gi|167621769|ref|YP_001676554.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167351510|gb|ABZ74240.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 5/239 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA +GSF+ AA+ LH++++S + I LE + +L +R R L LT +G+ + Sbjct: 7 MRVFKSVAETGSFSKAADTLHIARASATMTIQKLEAHLKARLVHRTTRSLNLTPEGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + ++ + P GKLRI + L + ++ + +F YP+I++ L Sbjct: 67 ERCVRILTDVEEAESLFGQAGLGPRGKLRIDMPVML-RVIVLPQIGDFRARYPNIELMLG 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ ID+ + DCA+R+ ++ SSL+ R++ T A+P YL P ++ +L Sbjct: 126 FNDRPIDLVHEGVDCALRI-GALRDSSLMSRRIGTYRTVTVASPEYLARQGTPSALADLS 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H + + + D ++ TVD PI VN + +Q + G G+ P Sbjct: 185 DHVAVNYFWAGSGRLMDLSF--TVDGGPITVKMNGAFAVNDTDAYLQSGLDGYGLIQAP 241 >gi|91789286|ref|YP_550238.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gi|91698511|gb|ABE45340.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 309 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 2/192 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F V +G+FT AA+ + + + +I+R I LE E+ KL R R +T+T G+ Sbjct: 4 FSAMQAFVRVVEAGTFTKAADSMAMPKPTITRLIQTLEKELDTKLLNRTTRKVTVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + P G+L++ LG ++ L +F YPDIQ+ Sbjct: 64 AYYERAGRLLSEMEELEASMSRAKASPRGRLKVDIPASLGIAVIIPALPDFYARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +DI + DC +R + I SL+ R++ ++ + A+P YLK P Sbjct: 124 DLGVSDRPVDIIAENVDCVVRGGELID-QSLVARRIGEFYLMSCASPAYLKRHGTPQHPA 182 Query: 185 EL-DKHNLITFG 195 EL D H +I + Sbjct: 183 ELEDSHRMIRYA 194 >gi|86360547|ref|YP_472435.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284649|gb|ABC93708.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 317 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 10/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA QL S +++SR+I LE + +KLF R+ RG LT Sbjct: 7 FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ ++ + E + +L + S+ G +R++ L F +P + Sbjct: 67 GTRFVDTAEKMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPRFAAQHPHL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + + +S AD ++ L +P + + KL H+ Y + YL Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEPKEGPYFAE-KLTDYHLQIYGSRDYLAKAPAITC 185 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 +L +H +++ ++I ++L+ V PRI Q +S + + G G Sbjct: 186 RDDLLEHPFVSYIEEMI--FAPGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +LP + P LVR++ + I + LK +++A +F+ Sbjct: 239 LCILPYFFASRYPELVRVLPEEIDLKRHYWITCHRDLKQAPRVRAVIDFL 288 >gi|78060453|ref|YP_367028.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77965003|gb|ABB06384.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 327 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 13/292 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +A SFT AA ++ +S++++S+ + LE ++ +KL YR R ++LTE G +L+ Sbjct: 12 FVHIAHHLSFTRAAAEMGVSRAALSQNLKALEQQLNVKLLYRTTRDMSLTEDGQRLYDTL 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +E L E PSG LR+ T+ + L++ L EF+ YP ++++L++++ Sbjct: 72 RPAFGSIEQAISSLHEVRHAPSGLLRVNTSRVAARTLIEPYLGEFMARYPLLRVELVMND 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I D D IRL + + + I M +P YL +P + +L HN Sbjct: 132 GMSNIIADGCDAGIRLGESLAEHMVAVPITPMIEMVVAGSPDYLARHGKPATPADLIAHN 191 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + + + + W T G EP+ S + N +++ + G G+ Sbjct: 192 CLCYRQTTSGAI--YRWEFTSTDIEGHAFEVEPKGSVV-TNDDDGMIRVALQGVGLIQHQ 248 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFIFLK 293 D +++ LVR+++ P F Y+ Y P + K++A +F+ K Sbjct: 249 DLALREQLAAGTLVRVLDAWCKP-FPGYYLYTPSREQMPAKVRALMDFLVEK 299 >gi|119897538|ref|YP_932751.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119669951|emb|CAL93864.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 308 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 138/293 (47%), Gaps = 12/293 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++A GSFT AA +L+L+ ++S++++ +E +G++L R R ++LT++G Sbjct: 7 ELAFFLLLADKGSFTAAARELNLTPPAVSKRLAQIEQRLGVRLLNRSTRRVSLTDEGELY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +E + L P G LR+ T+ G+ + + F +P++++QL Sbjct: 67 LEHARRIVADIEDMEASLGSRRAAPKGLLRVNATLGFGRTTIAPIVSAFARQHPEVEVQL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + ID+ D AIR + + S L RKL++ A+P YL P + EL Sbjct: 127 QLTDAPIDLVATGFDLAIRFGE-LPDSRLSARKLMSNRRFLCASPAYLDAHGTPQTPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +H I + + +D W R + ++ L N ++ + + G GI + Sbjct: 186 ARHACI-----LHRQNDDAYGIWRLARGRHVETVKVRGTLSSNDGDVVLGWALDGHGILI 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++ + ++ L ++ D P+ +Y YP +++AF +F+ + Sbjct: 241 RSEWDLAKYLESGRLRAVLPDYTLPTADLYAVYPARRNQPARVRAFIDFLLAR 293 >gi|254562813|ref|YP_003069908.1| LysR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254270091|emb|CAX26078.1| putative transcriptional regulator, lysR family protein [Methylobacterium extorquens DM4] Length = 301 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 15/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +GSFT A L + S+IS+ I+ LE + ++LF+R R L LTE+G + Sbjct: 7 LGAFVRAVEAGSFTAGARLLETTPSAISKSIARLERRLKVRLFHRSTRSLALTEEGQAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H +E + E + +G++++ +LG+ LL+ + FL +P ++++ Sbjct: 67 DRIAPLVHAIEDASGMIGEQAS--NGRIKVTMPAELGRALLEPITRVFLPCHPRMRLEAN 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D AIR P + L R L T+ + AAP YL P ++ +L Sbjct: 125 LSDRRVDLIHEGYDVAIRAGTP-PDTELTARLLGTLELVLVAAPAYLDRVGTPNTLADLQ 183 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LL 244 +H + G L P + W +V P G C + ++ V G GI +L Sbjct: 184 RHTHARYRLGGL-PYPVRS-AWGPSVALPPG-----CFDADDGEALRIAAVSGLGITQIL 236 Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + D + L R++ DV + VY + A +L+ F +F+ R W Sbjct: 237 HRSVSHDLASGRLRRVLSDVPLATVPVYALHAYARLAPERLRIFLDFVADTLRAW 291 >gi|110643768|ref|YP_671498.1| transcriptional regulator YhjC [Escherichia coli 536] gi|110345360|gb|ABG71597.1| hypothetical transcriptional regulator YhjC [Escherichia coli 536] Length = 306 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITF 194 H ++ + Sbjct: 210 SHAIVRY 216 >gi|259416988|ref|ZP_05740908.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] gi|259348427|gb|EEW60204.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] Length = 293 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 137/294 (46%), Gaps = 12/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F ++ A ++ LS ++++ +++ LE G +L R R ++LT++G + Sbjct: 4 ENLKLFLLIVEKAGLAAAGREVGLSPATVTERLAALEAHYGARLLTRTTRSISLTDEGRE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + E T+ ++ K SG + ++ DLG+ L L +F+ +P+I I Sbjct: 64 LVTGARRILAETEETEARIKLGVEKISGMIHMSAPSDLGRTQLVPLLDQFMSEHPEIAID 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + ID+ D A+R + + S++ RKL A+P YLK P+ + Sbjct: 124 LTLSDGIIDLVGQGIDLALRFGE-LSDSTMKSRKLGANRRIVCASPDYLKRNGTPMHPDD 182 Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 L HN ++ FG D +W +D + R+ ++ N I ++C+ G GIA Sbjct: 183 LSHHNCLIMRFG-----ANTDRDWAFVIDGQMKTKRVLGNRIANDGGLIRRWCLGGQGIA 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++ ++ +LV ++E ++ YP +++A F+ + Sbjct: 238 RKSEWDIRVDLATGDLVEVLEAFSPEPNALHMVYPAGAVQPRRVRALMEFLVAR 291 >gi|307730228|ref|YP_003907452.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584763|gb|ADN58161.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 298 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 19/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++RVF VA SFT A++ L + +++++ + +E +G +L R R + LT G Sbjct: 4 FEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTPDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + E S++ P G LR+ L ++ + L FL YP I++ Sbjct: 64 AYYGRCVRLIADLE--EAEGSFSNLAPKGLLRVNLQGTLARHFIVPALPAFLARYPGIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SS++ R++ + A+P YL+ EP Q Sbjct: 122 TIGEDDRLVDLVREGIDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPEYLQKYGEPADPQ 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLG 238 L H + + G +P +F+ + + P+ P +S V Y V G Sbjct: 181 ALSAHRAVNYVSSATGRPLPL---EFS-IEGRNTPMLLPGAVSVTGVELYTG---SAVAG 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P Y V+D + L I+ D PS V YP+ + + +++ F ++ Sbjct: 234 LGIVQVPRYRVRDELADGRLKIILADFPPPSLPVSVLYPQNRQLSSRVRVFSQWL 288 >gi|283479182|emb|CAY75098.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia pyrifoliae DSM 12163] Length = 301 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 14/191 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V SFT AA+ L + + ++S+ I LE ++G+KL +R R L++T +G Sbjct: 11 IFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEG------ 64 Query: 70 TSEVYHKLETTQIELQE--SSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 E+Y + +T ++ E +SV P+ G+LRI + L +L +L EF LYP I+ Sbjct: 65 -DEIYQRAKTLLNDVNEMMASVSPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIE 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L ++ D+ + DC IRL + + SS I R++ + M AAP YL P++ Sbjct: 124 IVLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTP 182 Query: 184 QELDKHNLITF 194 +L+ H I F Sbjct: 183 DDLEHHKAIHF 193 >gi|257488037|ref|ZP_05642078.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330985981|gb|EGH84084.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008708|gb|EGH88764.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 13/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF +A GSFT AE + + ++R I LE + ++LF R R + LT +G + + Sbjct: 1 MQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 RV + + ETT + + S G+LRI Q +LK F +PDI++ L Sbjct: 61 ERVKNNLADLAETTSMFDRNGSTL-RGRLRIDIPAAFSQRSFMESLKGFTQAFPDIELAL 119 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ + DCA+R+ + + SSL+ R++ M AAP YL+ P +++EL Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLEEL 178 Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H ++F L + W L D P+ PR + VN + +Q + G GI Sbjct: 179 ADHCGVSF--LSGQSNRPLPWHFSLNGDDFPV-LPR-GGITVNESNAYVQCGLAGFGILQ 234 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P V+ + LV ++E V YP +++AF Sbjct: 235 APGITVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAF 280 >gi|254504319|ref|ZP_05116470.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222440390|gb|EEE47069.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 302 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 143/299 (47%), Gaps = 14/299 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS D L +F VA G+ A + LS ++ ++++ LET VG +L +R R ++L+ Sbjct: 1 MSIDLKSLELFVRVAALGAIGKAGAEFGLSATAATQRLQALETTVGTQLLHRTTRAVSLS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + +E ++Q + G LR+A + G+ + ++ EFL +P Sbjct: 61 TDGEIFLAHAKRILGNVEEALADIQPDAQDIKGDLRVACSASFGRLHIAPHVTEFLEHHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + +QL + + +DI D AIR+ + + S+L RKL A+P YL+ P Sbjct: 121 GVTLQLAMSDSVVDIVEQGFDMAIRIGE-LAPSTLKARKLAESPRLLVASPKYLERHSVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 ++++L HN + D+ W L + D + + +I+ S +I + G Sbjct: 180 TTLEDLKHHNCLAREDM-------RTWSLTSADGTLHDVKINGNFSSTSAEAITEAARSG 232 Query: 239 SGIALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA + + D N +L+ ++++ ++P + V+ P + + +++AF +F+ K Sbjct: 233 LGIARKCAWEIADQLTNGSLIPVLKNHTVSPYWKVFAVRPPSRLPSARVRAFTDFLEAK 291 >gi|152986165|ref|YP_001348791.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961323|gb|ABR83348.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 327 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/272 (29%), Positives = 128/272 (47%), Gaps = 18/272 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D+L+ F V SGS + AAE + L+ S++SR +S LE ++G L R R + LT Sbjct: 33 MKANSDELQSFVSVVDSGSISAAAEHMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 92 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ ++E + L P+G+LRI + + ++ EF LYP Sbjct: 93 EEGRYFLEQARQILQRMEELEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 152 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQ++L ++ ID+ D AIR+ + S+L R L +H A+P YL P Sbjct: 153 NIQLELNTNDLIIDLLEQRTDVAIRI-GALSDSTLHARPLGASRLHILASPEYLARQGTP 211 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV----DRPIGEPRISCLQVNSYLSIMQYCV 236 ++ L +H L+ F E N V DR +P I C +S ++ Q + Sbjct: 212 RDVEALAEHTLLGFTQ-----PEHLNRWPVVHVDGDRLDIQPDI-C--ASSGETLRQLAL 263 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFT 268 GIA L ++ + I+E + P F Sbjct: 264 SHQGIACLASFMTDRD-----ILEGRLVPLFA 290 >gi|161520831|ref|YP_001584258.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352987|ref|YP_001948614.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221210121|ref|ZP_03583102.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|160344881|gb|ABX17966.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189337009|dbj|BAG46078.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221170809|gb|EEE03275.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 315 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGENY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YP++ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQYPEVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y++ P QEL Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRRHGAPARPQEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L W+ ++ P G +I +Q N+ S+ G GI + Sbjct: 186 AAHACLT---LRTPAFPTHEWV--LEGPDGVEQIHVSGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + LVR++ + I VY YP R +I K R W Sbjct: 241 LPLYAAIDALSDGTLVRVLPEHILQKMNVYALYPS-----------RRYIDAKVRTW 286 >gi|26990516|ref|NP_745941.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24985492|gb|AAN69405.1|AE016576_15 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 294 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 143/295 (48%), Gaps = 12/295 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V +GSFT AA++L +S+ S+SR++ LE +G++L R R L T G Sbjct: 4 YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +++ + ++ + G LR++ + L L EFL L+P + + Sbjct: 64 HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ SSLI R++ ++ A+P YL+ P Sbjct: 124 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIASVERVYCASPAYLQARGVPGKPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL H+ + +G W +++ ++ N+ + + G G+ Sbjct: 183 ELAAHDCLPYGH-----SRQVQWQFHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTY 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP +IV LV ++++ P+ + YP+ + ++ F + FL+AR Sbjct: 238 LPTFIVGQALAEGQLVTVLDEWRPPALQLSAVYPQHRQVARPVQGFVS--FLRAR 290 >gi|311103780|ref|YP_003976633.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758469|gb|ADP13918.1| bacterial regulatory helix-turn-helix protein, LysR family protein 18 [Achromobacter xylosoxidans A8] Length = 302 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 8/290 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D RV+ V +F+ AA+ L L +S++S + LE +G +L R R + T++G+ Sbjct: 5 DLFRVYARVVECANFSRAADTLGLPRSTVSAAVQELEGRLGARLLNRTTRQVAPTQEGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + + +SV P G LR+ +G+ ++ L FL YP I + Sbjct: 65 FYERCLRLVADMEEAENLFRHASVGPGGMLRVDVPGRVGRLIVAPALPAFLEAYPQIDVT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + DC +R+ + S L+ R + + + A+P YL P + + Sbjct: 125 LGVTDRAVNLIEEGVDCVLRVGV-LPDSGLVARPIGMLGLINVASPAYLARHGVPSTPDD 183 Query: 186 LDK-HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H+ + + + + WL V R + P + VNS + + CV G G+ Sbjct: 184 LAAGHSCVNYASPSTGRLAPWEWLDGGVSRTV--PLRGRVTVNSAEAYIASCVAGLGLIQ 241 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V+ LV +M D + YP+ + +++ F +++ Sbjct: 242 IPAYDVQPQIAAGELVEVMPDHRPAPMPMTLLYPQRRSPSRRVQVFADWL 291 >gi|258545444|ref|ZP_05705678.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC 15826] gi|258519306|gb|EEV88165.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC 15826] Length = 295 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 89/191 (46%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ +F +A GS AA +L L S++S + LE +G++LF+R R + LTE G Sbjct: 5 DFADFAIFVAIAEEGSLRAAAARLDLRPSTVSHGLRALEARLGVRLFHRTTRSVALTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + LE + + P+G++R++ + +L L+ F +PD++ Sbjct: 65 QALLARIAPALSTLEAADEAVNDFRAHPTGQVRLSVPRGIASCVLLPKLRAFAERFPDVR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + +N +DI D +RL + + + R + AAP YL C P S Sbjct: 125 LDIAAENGFVDIVSAGFDVGVRLGESVARDMVALRITPPVQAVIVAAPDYLARCPAPQSP 184 Query: 184 QELDKHNLITF 194 Q+L H I F Sbjct: 185 QDLAGHRCIGF 195 >gi|222102135|ref|YP_002546725.1| Transcriptional regulator [Agrobacterium radiobacter K84] gi|221728252|gb|ACM31261.1| Transcriptional regulator [Agrobacterium radiobacter K84] Length = 346 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 5/285 (1%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V +GSF AA +L S S+ +S LE +G++L R R L+L+E G + Sbjct: 49 RMFIAVIDTGSFAAAATRLGTSAGQASKLVSRLEANLGVQLIMRTTRALSLSEAGRAYYE 108 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + + ++ +S PSG+LRI + G L L +F +PDIQ+ + Sbjct: 109 RIKTLLEEFDDLDASVRNASGVPSGRLRITAPLTFGTTQLASVLIQFATAFPDIQLDVSF 168 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +++ + D AIR+ + + SSLI RKL I + AAP YL P L Sbjct: 169 SDRIVNLVDEGFDAAIRIGR-AEDSSLIARKLCAIRVVLVAAPSYLDGRGMPAEPAHLAH 227 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 H+ I + F A +PI +Q ++ + + G GIA P ++ Sbjct: 228 HDCIIDTNFRDPLTWRFKHHAD-PQPILADVHGRIQFSNAEACVAAAEAGLGIARAPSFV 286 Query: 249 --VKDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + VR ++ D +Y YP K++ +F+ Sbjct: 287 AGARLRAGAVRPVLSDFEDEPRGLYAVYPPGRHLALKVRVLVDFL 331 >gi|162148506|ref|YP_001602967.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787083|emb|CAP56671.1| putative transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 11/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VA +G FT AA + L+ S +SR ++ LE+ +G++LF R+AR TLTE G +L Sbjct: 11 IETLIAVAETGGFTRAAATMGLTPSGVSRAVARLESRLGVRLFDRNARSTTLTEAGHRLV 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E +S SG+LR+ LL L+ FL +P + + L+ Sbjct: 71 AEVAPLLAGIEEATSSAAGASATVSGRLRVNCDPWFASLLLAPKLRSFLDAHPALTLDLV 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + D+ + D AIR +P+ S LI RKL+ + A+P Y+ P+ ++L+ Sbjct: 131 TRDTLGDLVSEGFDVAIRFGEPL-PSGLITRKLLEARIVTCASPAYIARHGRPIHPRDLE 189 Query: 188 --KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA-- 242 H + F D P F+W I + L +N + + C+ G G+A Sbjct: 190 TGTHECLLFRD--PATGRPFDWEFHRQGEILNISVRGRLILNDVATGLAACIAGLGVAQP 247 Query: 243 --LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L D +++ L+ + D F ++ +P K++AF +FI Sbjct: 248 MTLGIDELLRSG-TLIDLFPDWCDEYFPLHVYHPSRHLPPAKVRAFLDFI 296 >gi|320173208|gb|EFW48419.1| LysR family transcriptional regulator YcjZ [Shigella dysenteriae CDC 74-1112] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 + I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DNQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|307728695|ref|YP_003905919.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583230|gb|ADN56628.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 318 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 129/285 (45%), Gaps = 8/285 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSFT A L + +ISR +S LE + +L R R L +T+ G + Sbjct: 6 NMSVFAKVVEMGSFTSVANHLDTTVGNISRAVSVLEESLDTRLMQRSTRRLVITDAGRRF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +E + E +++ ++P G+LR+ + LG+NL+ + + YP++ + L Sbjct: 66 YDRCVAILTDVELAEAEARDALLEPRGRLRVHSVPGLGRNLVTRAVMAYRSSYPEVSVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L + ++ + D I + + + S+ + + + + H A+P YL P ++L Sbjct: 126 LLSQRMPNLLEEQLDIGIVITRTLPDSAYVSQNIGSSHCILAASPEYLAAHPAPTCPEDL 185 Query: 187 DKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H + G D P ++++ + I P VN S+ Q G+GI LL Sbjct: 186 IDHQCVLLGTVDYAP---DEWHLESAAGGAIFRPAGPHFSVNDMDSMSQALRDGAGIGLL 242 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + D+ LVR++ T VY YP K+K F Sbjct: 243 AAFSAIDDLRSGALVRVLPGYHTQVRNVYAVYPSRQFVDAKIKRF 287 >gi|260460665|ref|ZP_05808916.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259033770|gb|EEW35030.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 139/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R SE+ ++++ ++ESS G+++++ + +L +F +PDI + + Sbjct: 66 YRRASEIVREVDSLADAVRESSGDVRGRIKVSAPRTFADAPIGQSLIDFAKQHPDIVLDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D A+R+ + +++SSLI R+L + A+P + P Q+L Sbjct: 126 QLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSVKLCASPELIAKHGMPTRPQDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + + ++ + + + ++VNS ++ + G G +LPD Sbjct: 185 GHMPCIV--DTNGRGLNNWPFKGDNNDQLSVAVSGPIEVNSPMAARAAAISGLGFCILPD 242 Query: 247 YIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I + LV ++D I ++ YP K++ F +F+ Sbjct: 243 FIAAPDLKSGLLVTALDDRILSGGGIFAVYPHRRYLPAKVRVFVDFL 289 >gi|221196488|ref|ZP_03569535.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221203157|ref|ZP_03576176.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221177091|gb|EEE09519.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221183042|gb|EEE15442.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 315 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGENY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YP++ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQYPEVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y++ P QEL Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRRHGAPARPQEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L W+ ++ P G +I +Q N+ S+ G GI + Sbjct: 186 AAHACLT---LRTPAFPTHEWV--LEGPDGVEQIHVSGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + LVR++ + I VY YP R +I K R W Sbjct: 241 LPLYAAIDALSDGTLVRVLPEHILQKMNVYALYPS-----------RRYIDAKVRTW 286 >gi|254489583|ref|ZP_05102785.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] gi|214041753|gb|EEB82394.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] Length = 291 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 140/301 (46%), Gaps = 24/301 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW R F V SGS + A L ++Q S+SR I LE +G KLF R RG++ TE Sbjct: 6 DWTLYRTFAAVLDSGSLSGAGRLLGMTQPSVSRHIDLLEAALGSKLFLRTHRGMSPTEAA 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ R ++ + + +G +RI+ T +G L L +P ++ Sbjct: 66 ERI-RPHVDILTASSAAIKRAASRTSEVAGTVRISATEVVGTEYLPPILATIRRAHPALE 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L N D+ AD AIR+ +P Q SL+ ++L + + YA YL P+S+ Sbjct: 125 IDLSLSNFVEDLLQRQADIAIRMTEPKQ-LSLVTQRLRDLEVGLYAHRDYLARRGVPVSM 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRIS----CLQVNSYLSIMQYCVL 237 EL H+LI F+ R + + P +S L+ +S +I QY + Sbjct: 184 AELLDHDLI-----------GFDTQTAAARALAQRYPALSQAAFALRTDS--NIAQYAAI 230 Query: 238 GSGIALLP--DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +G + P + + + P+LVR++ D I+ S ++ E L+ T +A + + L R Sbjct: 231 KAGFGIGPCQEPLARRTPSLVRVLPD-ISASSGIWLVMHEDLRATAVCRAVFDALELGLR 289 Query: 296 D 296 + Sbjct: 290 N 290 >gi|254437534|ref|ZP_05051028.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198252980|gb|EDY77294.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 301 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 134/292 (45%), Gaps = 6/292 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW ++ F +VA GS + AA +L SQ ++ RQI LE ++ LF R ARG LT+ G Sbjct: 9 DWSLIQAFLMVAEEGSLSGAARKLGASQPTLGRQIKALEHQLSASLFTRQARGFELTQTG 68 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + + S + SG +RI ++ L + + L P I Sbjct: 69 AALVAPARAMRDAMGQITLTAAGQSARMSGTVRITASVMTSLYHLPDIIAKIRLAEPAIG 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+++ + ++ AD A+R+ +P Q L+ + + I + A+ Y + Sbjct: 129 IEIVASDDTRNLLYREADIAVRMYRPTQ-LDLVTQHIGDIPLTICASKSYFARKGSLHGV 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ + + D ++ F A ++ ++ C +Y ++++ G GI Sbjct: 188 ADLAHHDFVGY-DTNSALIDGFR-EAGIEVTRDFFKVRCDDHATYWNLVRA---GCGIGF 242 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + +D+PN+V I V PS V+ EA+++T +++ + + + R Sbjct: 243 AQGSVARDDPNIVAIDPGVAIPSLPVWLVAHEAMRHTPRIRRVWDLLAIGLR 294 >gi|194737184|ref|YP_002116544.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300687|ref|ZP_02660264.2| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194712686|gb|ACF91907.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291385|gb|EDY30737.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++ Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEFC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + M A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRMVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275 >gi|330504445|ref|YP_004381314.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918731|gb|AEB59562.1| transcriptional regulator, LysR family [Pseudomonas mendocina NK-01] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 140/291 (48%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R G F+ AA QL L+ SS++R ++ LE E+G L R+ R ++++E G Sbjct: 7 LRTFVATVRCGGFSAAARQLGLATSSVTRAVNALEQELGCVLLNRNTRQISVSEAGRDYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + + G+L ++ ++ + ++ +L + L +P +++ L Sbjct: 67 ERALAILDALDEADAAVADKDGEVRGRLAVSVPVEFARRIIAPHLGKLLQRHPQLEVSLR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186 + ++ +D+ + D A+RL I S ++ +++ + A+P YL C P++ + L Sbjct: 127 VTDEVVDLLSERVDLALRLGSSIVSDDVVSQRVGSFRRWLVASPQYLA-CNSPITQPDAL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + P F + + P L+ N+ + Q + G GIALL D Sbjct: 186 QMHACLQYDYGSPANYWRFE---KDGKTLQVPVSGRLRSNNADILRQAALDGQGIALLSD 242 Query: 247 YIVKDNPN---LVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFI 290 ++V+D+ + L R++ D + P T++ Y + + ++ AF F+ Sbjct: 243 WLVRDDVDSGKLQRLLPDYDVAPGPHEGTIHLLYLPNHRGSRRIAAFSEFL 293 >gi|260554169|ref|ZP_05826428.1| transcriptional regulator LysR family protein [Acinetobacter sp. RUH2624] gi|260404711|gb|EEW98222.1| transcriptional regulator LysR family protein [Acinetobacter sp. RUH2624] Length = 313 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + E+ ++ KP G+LR+ + G + + + EF YP++ ++ Sbjct: 73 ERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YL+ P S ++L Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGIPESPEDLK 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P D++ L T L ++ ++ GIALLP + Sbjct: 193 SHACLRLVN--PSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALLPMF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 D N L I+ + +P VY P R+FI K R W Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|260222069|emb|CBA31266.1| hypothetical protein Csp_C27680 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 311 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 17/297 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS T AA ++ + + R++ LE +G+KL R R +TLT +GS Sbjct: 6 QLESFVSVATRGSLTAAANAEGVAPAIMGRRLDALEERLGVKLLIRTTRRITLTHEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + VK +G LRI G+ + + +F L+PD+ I L Sbjct: 66 LEDCQRIIADVTNAEASVSAGGVKAAGHLRITAPAGFGRRHVAPLVPKFRELHPDVTISL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +DI+ + DCA+R+ + SSL+ ++ A P YLK P + +L Sbjct: 126 NLSDRVVDIAGEGFDCAVRVGD-MPDSSLVSVRMADNRRLCVATPAYLKRHGTPKTPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISCLQVNSYLSIMQYCV 236 + + +T L + W + GE L + + +C+ Sbjct: 185 SRFHCLT---LSSDASQTRGWAFKLPAAKGERADTGEVIYLKPAGPLDCSDGQVLHDWCL 241 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA + V++ LV ++ED P +Y +P+ +++ + +FI Sbjct: 242 GGYGIAWRSTWEVENEIAAGRLVAVLEDYAAPPNGIYAVFPQRKHMPLRVRLWIDFI 298 >gi|167908016|ref|ZP_02495221.1| LysR family transcriptional regulator [Burkholderia pseudomallei NCTC 13177] Length = 313 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/170 (38%), Positives = 84/170 (49%), Gaps = 8/170 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGLTLT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLTLTPKGGALH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 + ID +S D D AIR P +L L + A AAP YL Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFDYGALHVEPLFDESLVAAAAPAYL 177 >gi|167580916|ref|ZP_02373790.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 294 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 17/290 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR G+ + AA +L + +++ R+++ LETE+ +L R AR TLT Sbjct: 2 FDWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQTRLVERFARHCTLTGV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + S + + +Q + +G + ++ L N F YP I Sbjct: 62 GRRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L + + +S AD A+RL +P ++ +++ R++ + YAA Y P Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEADNVV-RRIGAMAFALYAARRY------PY- 173 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +QE + + + D M WL V G+ I+C ++ S G+GI Sbjct: 174 LQEPARWEFVGYDDPFDD-MPQQRWLKKV---AGKRAIAC-RLGDITSQYAATRAGAGIG 228 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + +LV + DV F ++ LK + ++A +FI Sbjct: 229 MLPRFLPAASDDLVEL--DVDAEPFVRDIWLVVHRQLKASPPIRAVMDFI 276 >gi|330809257|ref|YP_004353719.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377365|gb|AEA68715.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 307 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 14/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF + G F AA+ L L ++++S I LE +G++L R R + T G + Sbjct: 7 MQVFRRIVELGGFGKAADDLGLPRATVSLLIQQLEAHLGVQLLQRTTRQVRATLDGQAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ L+ + L +P G L++ I G + L +F YP +Q+ + Sbjct: 67 QRSGQLLDDLDDLESSLSAQRSQPRGTLKVDMPIAFGCTWIVPRLPDFYRRYPALQLDIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + + DCAIR I +L+ R +V +H A+P YL P +++L Sbjct: 127 FHDRQVHLQREGVDCAIRAGN-IVDQALVARPIVRLHQLTCASPDYLARAGTPGRLEDLA 185 Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H I F G P E + + P S L VN+ + + C G G+ Sbjct: 186 AHRAIGFASGNGRFFPFEFEVAGRVREMQLP------SDLNVNNADAYVTACEAGFGLIQ 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V+ LV++++D PS+ + YP + + +++ F +++ Sbjct: 240 VPRYHVQQQLAEGRLVQVLDDYSVPSWPISAVYPPHRQLSPRVRVFIDWV 289 >gi|291613818|ref|YP_003523975.1| LysR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291583930|gb|ADE11588.1| transcriptional regulator, LysR family [Sideroxydans lithotrophicus ES-1] Length = 301 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 132/275 (48%), Gaps = 19/275 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +A S AAE L + ++++SR+++ LET +G +L R R LTLTE G + Sbjct: 13 LFAAIAEQESLVRAAEHLGMPKATVSRRLTNLETVLGQRLLLRTTRRLTLTEFGQEFLDH 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++ T Q ++ VKP G+LR++ D + L L F+ YP+I + L L Sbjct: 73 CRRVAEEVATAQDFVRSQDVKPHGRLRVSMPEDYAKQNLSRALATFIESYPEIHLDLDLS 132 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR+ S+L+ RK+ H YA+P YL P +EL +H Sbjct: 133 SRLVDLIGERFDLAIRMGTLENDSTLVARKIDEQHFGLYASPIYLGLHPAPKHPEELLQH 192 Query: 190 NLITF----GDLIPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + G LIP + NW P G L +NS I Q + G+GI Sbjct: 193 TTLRMLSDQGQLIPWKLSRGKSNWEGV---PPGR-----LALNSIGVIQQLLLDGAGIGA 244 Query: 244 LPDYI----VKDNPNLVRIMEDVITPSFTVYFCYP 274 LPD V+ N LVR++ + PS + P Sbjct: 245 LPDRFTLEDVRRN-RLVRVLPEWCLPSVPAWAVMP 278 >gi|224825606|ref|ZP_03698711.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224602527|gb|EEG08705.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 318 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 8/292 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F R SFT AAE+L+L+QS++SRQI LE +G LF R + L LT G Sbjct: 11 LQCFEAAVRHLSFTRAAEELNLTQSAVSRQIRALEDFIGRPLFERVKQRLVLTVAGEAYA 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V + E ++L S + G L IA G L L +F YPDIQ+ L+ Sbjct: 71 AAVQDVLDRAEAATLQLMAYSGE-GGMLTIAMLPTFGSRWLVPRLGDFAARYPDIQLNLV 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + D AD AI + ++ R L+ + AP L ++E+ Sbjct: 130 TQVRPFDFDKVEADVAIHFGPALWPGAICHR-LMGEDIVPVCAPALLGGRPHLDDVREIL 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSGIALLP 245 + L+ P+ D+ A ++ G +S + + ++Q V G GIA+LP Sbjct: 189 AYTLLQH-TTRPQAWNDWLHAAGIEGLTGNEAGLLSGPRFEHFFMVIQAAVAGLGIAVLP 247 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 ++V++ + LV ++ + Y +P + K++ FR ++ +A Sbjct: 248 HFLVEEELQSGRLVLALDKPVRSQHAYYLVHPATKADLYKVRVFREWLLEQA 299 >gi|224585164|ref|YP_002638963.1| DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469692|gb|ACN47522.1| probable LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 309 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 4/248 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ ++ LE E+ +K R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKSLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L G + L YP + + L Sbjct: 66 YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPL 241 Query: 247 YIVKDNPN 254 V D N Sbjct: 242 MWVIDEIN 249 >gi|84386758|ref|ZP_00989783.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] gi|84378286|gb|EAP95144.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] Length = 305 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 10/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ +EQ +L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVELGSFSKVSEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + + SG ++++ G +L + EF ++P + + Sbjct: 64 MLHGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ +D+ D D IR ++ SSLI R ++ A+P Y+ +P+ ++ Sbjct: 124 MSLNNRFVDLVDDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMQPKD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RIS-CLQVNSYLSIMQYCVLGSG 240 L +HN + + E + +L + D R+S ++ ++ + + G G Sbjct: 183 LVEHNCLQYAYQTTGASE-WQFLHSKDGFTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +A +P +V N LV I D++ +Y YP + K+K Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIK 288 >gi|260554923|ref|ZP_05827144.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260411465|gb|EEX04762.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 310 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 13/255 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LR F V + +F++ A + +S S ISR I LE +G +LFYR+ R +T TE Sbjct: 6 SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + Q LQ+ +++PSG +RI + GQ + L YP Sbjct: 66 SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+LI ++ ID + D R+ + SS R T H A+P Y+ Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 EL++H + + K E N WL V +P E P L N+ S+M + Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237 Query: 237 LGSGIALLPDYIVKD 251 G GI L PD+++ + Sbjct: 238 HGMGIVLFPDWLIGE 252 >gi|259418855|ref|ZP_05742772.1| putative LysR substrate binding domain protein [Silicibacter sp. TrichCH4B] gi|259345077|gb|EEW56931.1| putative LysR substrate binding domain protein [Silicibacter sp. TrichCH4B] Length = 302 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 9/291 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L VVA +FT AA +L LSQS++S+ + LE +G++L R R ++ T G Sbjct: 5 DMADLTALVVVAEERNFTRAAARLGLSQSALSQIVRRLEERLGVRLLARTTRSVSPTPAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + S + ++ + EL KP+G +R+ + + +L L L YPDI Sbjct: 65 EQLVQRLSPMLRDIDLSIAELSNFRDKPAGPIRVTSVEHAAKTILNPALASLLPEYPDIS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I+D DI + D +RL + ++ + R I M AP Y + R P Sbjct: 125 VEIIIDYGLTDIVAERFDAGVRLGESVEKDMISVRISPDIPMAIVGAPEYFASNRPPEDP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 ++L +H I +P W + D R L NS I + G+G+A Sbjct: 185 EQLVEHRCINLR--LPTSGTLNAWRMSKDNQDIRVRTQGPLIFNSIDLIRDAALRGTGLA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP VK + LV ++ V TP Y Y + +++ AF+ F+ Sbjct: 243 YLPVDQVKSHLETSQLVHVLA-VNTPPLPGYHLYYPSRRHSS--PAFKLFV 290 >gi|222082378|ref|YP_002541743.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727057|gb|ACM30146.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 297 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 132/280 (47%), Gaps = 19/280 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VA+ SFT AA +L +SQS++S+ I LE +G++L R R + T+ G Sbjct: 5 NFNDLAAFATVAKERSFTKAAAKLGVSQSALSQTIKALEERLGLRLLTRTTRSVAPTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + +E L E KP+G +RI ++LQ LK FL YPDI Sbjct: 65 ERLLQTVAPRFEDIEAELAALSELREKPAGTIRITAGEHPAISVLQPALKRFLPNYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I++I+D DI + D +R+ + + + R + M +P Y + P + Sbjct: 125 IEIIVDYGLTDIVAEGFDAGVRIGEQVAKDMIAVRIGPEMRMAVVGSPAYFEKRPAPQTP 184 Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 Q+L H+ I T+G L P +E V GE L N+ + + G Sbjct: 185 QDLTAHSCINMRLPTYGGLFPWGLEKDGREVKVR---GE---GQLVFNNLGMRLHSALDG 238 Query: 239 SGIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273 G+A +P+ Y+ + L+R++ED P F Y Y Sbjct: 239 LGVAYMPEDQVLSYVAEG--RLIRVLED-WCPYFPGYHLY 275 >gi|70732520|ref|YP_262283.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346819|gb|AAY94425.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 142/297 (47%), Gaps = 12/297 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F V G + AA ++ SS+S+ ++ LE +G++L R R L LT +G Sbjct: 9 FAEMETFVAVVECGGLSAAARLRQVTPSSVSKLLARLEARLGVRLLNRSTRQLQLTAEGR 68 Query: 65 KLHRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + L ++E + SS + P G++R+ T+ G ++L + EFL LYP + Sbjct: 69 GFYENSVRLLADLR--EVEGEASSARAPVGRVRVNTSASFGLHVLAPLVAEFLQLYPQVS 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L+ + +D+ + D AIR P+ S LI RKL +P YL C P + Sbjct: 127 LDLVHSDALVDLLGEQTDVAIRT-GPLADSQLIARKLGETRGVVVGSPAYLARCGVPQTP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L H+L+ F + + + A + + +P +Q + ++ + G+G+A Sbjct: 186 EDLAAHHLLGFD--YARALPGWRLGAAGESQLLQPN-GRVQASDGEALRHLALHGAGLAQ 242 Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCY-PEALKNTGKLKAFRNFIFLKAR 295 L + + D+ LV ++E P + Y Y + +++ F +F+ L+ R Sbjct: 243 LAAFTIADDLASGRLVPVLEAFNQAPLESFYALYVGQGGHVPSRVRVFIDFLALRVR 299 >gi|332141527|ref|YP_004427265.1| probable transcriptional regulator, LysR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551549|gb|AEA98267.1| probable transcriptional regulator, LysR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 301 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 132/286 (46%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VVA GSFT AA +L S +S+ ++ LE + +LF R R + LTE G + Sbjct: 7 LKTFVVVANEGSFTKAAVRLDTSNQLVSKYVAQLEKHLDTRLFNRTTRKIHLTEAGRQCL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + +L + + G L ++ + L G + F +P + I L Sbjct: 67 QHANHILESINDMESQLGLFNTQAKGTLHVSAPVSFSTLHLAGAIGAFQHAHPHVSINLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ ID+ + D AIR + SSSL+ +K+ TI++ +P YLK PL +L Sbjct: 127 LNDRKIDVIDEGFDVAIRAGH-LASSSLVAKKITTINLALCVSPAYLKKYGRPLHPSDLK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + + + + L + + L N+ + G G L P + Sbjct: 186 PEHYLEYSYV--NYDNNQSELIAALKANAQKSPPKLTANNGEVLTNVAKQGEGYVLQPTF 243 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IV + LV I+++ I S +Y YP + KL+ F +F+ Sbjct: 244 IVGEALKKGELVSILDEYIPQSIALYAVYPHRKLISNKLRVFIDFL 289 >gi|113971672|ref|YP_735465.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|113886356|gb|ABI40408.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 19/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAE L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 MRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRSVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V ++ + + + G +RIAT + LGQ+ L + F+ L+P + IQL+ Sbjct: 67 QYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQLL 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI RKL+ I AAP YL E L++ Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARKLMNIDAVLCAAPSYLAQA-ESLTV--- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 ++L++ LI + + L + +P + L N ++ + G GIA LP Sbjct: 181 -PNDLLSHNCLIHSSQQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLPC 238 Query: 247 YIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + NP L ++ P T++ Y L + + R FI A+ W+ Sbjct: 239 DLA--NPYLASGQLQEVLPAYTAPGQTLWAVY---LSRSYQQALVRAFIDCTAQQWQ 290 >gi|308095353|ref|ZP_05905259.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308087299|gb|EFO36994.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] Length = 304 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 139/294 (47%), Gaps = 18/294 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F R+ SF+ AA + L++S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 10 RLHHFLPFGRTSSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQSF 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 VY + T + + SG ++I G+ +L G + EF YPDI I + Sbjct: 70 FVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINIDM 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +DI + D AIR + SSLI RKLV + A+P YL P EL Sbjct: 130 ELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIEL 188 Query: 187 DKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 KHN + + E D + TVD L N+ ++ +LG G Sbjct: 189 TKHNCLVYSYQETGAREWAFKAGDKMYQVTVD--------GNLCTNNSSALRNVALLGQG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + +P +V ++ +L+++ ++ +Y YP + K+K F + ++ Sbjct: 241 VIYVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 294 >gi|241763320|ref|ZP_04761376.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241367472|gb|EER61771.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 309 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 34/270 (12%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V R GSFT AA L +S ++S I GLET +G++L R R ++ TE G +L+ Sbjct: 13 AFVHVVREGSFTRAAALLGVSPGALSHAIKGLETRLGVRLLTRTTRKISATEVGERLYAN 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + +++ + E KP+G +RI ++L L + L YPDI++++ +D Sbjct: 73 VASRFEEIDAEVAAVSEMRDKPAGTIRITAAEHAADSVLWPKLSKVLHDYPDIRVEINVD 132 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 DI D +RL + + R + M AP Y +P + +L +H Sbjct: 133 YALSDIVSQRFDAGVRLGDQVAKDMIAVRISPDLRMVVVGAPSYFAQHPKPATPHDLAQH 192 Query: 190 NLI-----TFGDLIP----------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 N I T G L+P K D W+ NS +++ Sbjct: 193 NCINLRLPTHGGLLPWDFDRHGKEIKFRVDGQWV----------------FNSTTRMVRA 236 Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMED 261 + G+A +P+ +V ++ LVR+++D Sbjct: 237 ALADYGLAFVPEDMVLEHLAAGRLVRVLDD 266 >gi|218891474|ref|YP_002440341.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218771700|emb|CAW27474.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 301 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF VA +G F AA Q++LS +++S+ ++ LE + ++L R R ++LTE G Sbjct: 7 LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE L PSG LR++ + L L + FL YPD++++L+ Sbjct: 67 QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D A+R + S L+ R L+ + AAP YL +PL + L Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLILEHVLCAAPAYLGQHGQPLRPEALR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F W +R I P +V+S L++ + G G++L+P Sbjct: 187 EHECIRFS----LSGHADRWTFRKERECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ LV ++ D ++ YP + + GK + F +F+ Sbjct: 243 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 288 >gi|163741971|ref|ZP_02149360.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161384692|gb|EDQ09072.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] Length = 293 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 137/294 (46%), Gaps = 12/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F ++ A ++ LS ++++ +++ LE G +L R R ++LT++G + Sbjct: 4 ENLKLFLLIVEKRGLAAAGREVGLSPATVTERLAALEAHYGARLLTRTTRSISLTDEGRE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + E T+ ++ K SG + ++ DLG+ L L +F+ +P+I I Sbjct: 64 LVTGARRILAETEETEARIKLGVEKISGTIHMSAPSDLGRTQLAPLLDQFMAEHPEIAID 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + ID+ D A+R + + S++ RKL T AAP YLK P+ + Sbjct: 124 LTLSDGIIDLVGQGIDLALRFGE-LSDSTMKSRKLGTNRRIFCAAPDYLKRNGTPMHPDD 182 Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 L HN ++ FG D W +D + R+ ++ N I ++C+ G GIA Sbjct: 183 LGHHNCLIMRFG-----ANTDQGWAFVIDGQMKTQRVFGNRIANDGGLIRKWCLGGHGIA 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++ ++ + +LV ++E + YP +++ +F+ + Sbjct: 238 RKSEWDIRADLAKGDLVEVLESFSPEPNALQVVYPAGAVQPRRVRTLMDFLVAR 291 >gi|163797634|ref|ZP_02191583.1| transcriptional regulator, LysR family protein [alpha proteobacterium BAL199] gi|159177109|gb|EDP61671.1| transcriptional regulator, LysR family protein [alpha proteobacterium BAL199] Length = 313 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 11/290 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S +WD LR F + RSG+ AA +L ++ ++++R++S LE +G ++F R GL ++ Sbjct: 7 SINWDDLRFFLAIYRSGTLRGAARELGVNHATVTRRLSTLEAALGARVFDRRPDGLAPSQ 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L V +L + P G +R++ + Q+ L L F L+P Sbjct: 67 AGEDLLEAAERVEGELVAMHRRIVGRDDSPRGVVRLSVPPAMLQSFLARELVAFARLHPG 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I++ + + D++ A+ A+R+ + + L+ +++ YA+P Y+ Sbjct: 127 IELDVDASHSYSDLARREAEVAVRMADEV-TEDLVGLRVIRYRKAIYASPAYVATADGGK 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240 ++ D H+ I +G +P +W D P P + ++ S + +Q G G Sbjct: 186 NLDP-DVHSWIGWGAGLPYP----SW--PRDTPF--PNLPVRHRLFSNILQLQAATEGLG 236 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +ALLP ++ + P +VR+ +++ Y L+ T +++ +FI Sbjct: 237 LALLPCFLGDEQPGVVRVPGTGTLDGKSIWVLYHHDLRKTARIRTLIDFI 286 >gi|15596264|ref|NP_249758.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100512|ref|ZP_01364430.1| hypothetical protein PaerPA_01001537 [Pseudomonas aeruginosa PACS2] gi|116048996|ref|YP_792202.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892970|ref|YP_002441839.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234203|ref|ZP_04927526.1| hypothetical protein PACG_00038 [Pseudomonas aeruginosa C3719] gi|9946982|gb|AAG04456.1|AE004538_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584217|gb|ABJ10232.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166134|gb|EAZ51645.1| hypothetical protein PACG_00038 [Pseudomonas aeruginosa C3719] gi|218773198|emb|CAW29010.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 304 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D L F V+ GSFT AAE+L S+ +S++I LE ++G+ L +R R L+LT G Sbjct: 3 DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + E + + + G++R+ + LG+ L L++F +P ++ Sbjct: 63 AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L N D+ + D AIR Q + L+ R L + A+P YL EP Sbjct: 123 VELDLYNGLRDLVGEGFDLAIR-SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 EL + + L WL + R++ +++ S+++ L G+GIA Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRHHRLERVRVAGFLASNHYSLLKKAALAGTGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LP Y+V D + L ++ D T S ++ +P Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHP 272 >gi|307727765|ref|YP_003910978.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307588290|gb|ADN61687.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 297 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 145/302 (48%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AA+ L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 8 NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E +I L+ + + L++ T + + + F YP++ +Q Sbjct: 68 LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQTEYPELHVQ 122 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D ++ D AI +Q+ L + +L + AP LK+ +P Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGPDVQAVPLFEERLTPV-----CAPDLLKD--KP 175 Query: 181 L-SIQELDKHNLITFGDLIPKCMEDFN-WLATVDR--PIGE--------PRISCLQVNSY 228 L ++ +L +H L+ + D+ WLA V P+ P L + + Sbjct: 176 LAALGDLARHTLLHPT----RDHRDWKMWLAKVAETDPVNARAIDAEHGPSFDTLDMATN 231 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 ++ + V S +AL+ + + LVR + V+ + YF YP+++ + KLK FR+ Sbjct: 232 AALQGFGVAISDLALIDEDVAAR--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLKLFRD 289 Query: 289 FI 290 +I Sbjct: 290 WI 291 >gi|218673662|ref|ZP_03523331.1| probable transcriptional regulator protein, LysR family [Rhizobium etli GR56] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 130/264 (49%), Gaps = 18/264 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V G F+ AA ++ S++S+ ++ LE +G++L R R L LT +G Sbjct: 11 EMEVFVSVVERGGFSAAATVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + E Q SS + +G++RI T+ G ++L + F+ L+P + + Sbjct: 71 YERSIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +K ID+ + AD AIR P++SSSLI RKL A+P YL EP ++ + Sbjct: 129 IAHTDKVIDLMEERADVAIRA-GPLKSSSLIARKLGATGKIIVASPDYLGRHGEPCTVAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241 L +H I F + +E + R GE P +QV ++ + G+G+ Sbjct: 188 LRRHCRIGFS--YARAIEGWPM-----RESGETVTIPITPGIQVADGEAMRHLALSGAGL 240 Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262 A L + V+ + L ++ED Sbjct: 241 ARLAAFTVRADIEAGRLAPVLEDA 264 >gi|169795866|ref|YP_001713659.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213157441|ref|YP_002319486.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|215483351|ref|YP_002325562.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|301345664|ref|ZP_07226405.1| LysR substrate binding domain protein [Acinetobacter baumannii AB056] gi|301511009|ref|ZP_07236246.1| LysR substrate binding domain protein [Acinetobacter baumannii AB058] gi|301597460|ref|ZP_07242468.1| LysR substrate binding domain protein [Acinetobacter baumannii AB059] gi|169148793|emb|CAM86661.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|213056601|gb|ACJ41503.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213986839|gb|ACJ57138.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] Length = 310 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 13/255 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LR F V + +F++ A + +S S ISR I LE +G +LFYR+ R +T TE Sbjct: 6 SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + Q LQ+ +++PSG +RI + GQ + L YP Sbjct: 66 SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+LI ++ ID + D R+ + SS R T H A+P Y+ Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRI-GALTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 EL++H + + K E N WL V +P E P L N+ S+M + Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237 Query: 237 LGSGIALLPDYIVKD 251 G GI L PD+++ + Sbjct: 238 HGMGIVLFPDWLIGE 252 >gi|152983805|ref|YP_001349982.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150958963|gb|ABR80988.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 314 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA++L L+ + +SR ++ LE + +L +R R + LTE G + Sbjct: 6 NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLRTRLLHRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +PSG L++ +GQ+ L + ++ YP++ L Sbjct: 66 LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N+ DI + D ++ + + S + + + + A+P Y+ P EL Sbjct: 126 TLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPRLPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241 H + L+ M WL D P G+ ++C+ QVN+ ++ + V G GI Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + + +LVR++ VY YP K++ + F+ Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFL 291 >gi|332368487|gb|AEE61319.1| LysR-type regulator [Serratia plymuthica RVH1] Length = 319 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 11/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F VA GSF+ AA +L + SS+ R I LE+ + LF R RGL LT+ G Sbjct: 27 EHLPIFLEVALQGSFSAAARKLGMVPSSLVRHIDALESALDATLFIRSTRGLMLTDAGEM 86 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + EL S P G LRI+ G+ + L YP + + Sbjct: 87 LKARAAALLSDITDIRAELASLSDVPQGTLRISCLPTFGKTYILPLLPTLAERYPQLFVD 146 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D + + D AIR+ + + S L ++ T A+P Y+ P + Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPDYIARYGCPGDLNA 205 Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H LI + P C W + + L+ N + + Q +LG GI L Sbjct: 206 LPEHRLIARYNKQQPAC-----WTQILSGQLLNRCSMVLRCNDFTAQRQAALLGLGITFL 260 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V + L +++ED +Y P A K + +L AF + Sbjct: 261 PNWVVGPDIQAGRLHQVLEDPRQEQQGIYLLRPVA-KISARLSAFTRLL 308 >gi|238027757|ref|YP_002911988.1| hypothetical protein bglu_1g21810 [Burkholderia glumae BGR1] gi|237876951|gb|ACR29284.1| Hypothetical protein bglu_1g21810 [Burkholderia glumae BGR1] Length = 313 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKLR+ + LGQ+ + + YP++Q+ L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLRVHSMTSLGQHYAVPMIARYRQRYPEVQVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ + + + S L+ ++L A A+ YL+ P ++L Sbjct: 126 TLAQRLPDLLDEGFDVSVVVDRHLPDSGLVSQRLGETFSVACASADYLERHGVPQRPEDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP------RISCLQVNSYLSIMQYCVLGSG 240 D H + G + + D +W T+ P GE R C+ V L++ +G G Sbjct: 186 DAHACL--GMVATGFVWD-DW--TLVGPDGEEHFPPAQRSFCVNVAEALAVAIREGMGVG 240 Query: 241 IALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L I + VR+M + + +Y YP K++ + +F+ Sbjct: 241 VLPLHTAIAGLRAGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFM 291 >gi|186472108|ref|YP_001859450.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184194440|gb|ACC72404.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 300 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 23/293 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AAE L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 17 NALQIFETVARHRSFTRAAEHLCLTQGAVSRQILALEDYYQFPLFRRHAKGLTLTAEGEL 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E +I L+ + + L++ T + + + +F YPD+ +Q Sbjct: 77 LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMQFQADYPDLHVQ 131 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D ++ D AI +Q+ L + +L + AP L++ +P Sbjct: 132 ITTTWQHDVDFQVEPFDAAIVYGTSAGADVQAVPLFEERLTPV-----CAPQLLQS--KP 184 Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L+ +L +H L+ T K D +D +G P L + + ++ + + Sbjct: 185 LAKTADLARHTLLHPTRDHRDWKMWLDHVEARNIDANLG-PSFDTLDLATNAALQGFGIA 243 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 S +AL+ + + LVR + V+T YF YP+++ + K+ FR++I Sbjct: 244 ISDLALIEEDVAAQ--RLVRPFDAVLTTGARYYFVYPDSVAHQQKVNLFRDWI 294 >gi|76811532|ref|YP_331949.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b] gi|126453831|ref|YP_001064639.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134279786|ref|ZP_01766498.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|217425661|ref|ZP_03457152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|226200325|ref|ZP_03795869.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237810539|ref|YP_002894990.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242315073|ref|ZP_04814089.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254260160|ref|ZP_04951214.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|76580985|gb|ABA50460.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b] gi|126227473|gb|ABN91013.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|134248986|gb|EBA49068.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|217391337|gb|EEC31368.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|225927647|gb|EEH23690.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237506216|gb|ACQ98534.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242138312|gb|EES24714.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254218849|gb|EET08233.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 362 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 19/301 (6%) Query: 2 SFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 +F D L VF V GSF AAE++ +S + S+ + LE ++G +L +R R + Sbjct: 40 AFRMDTLVSMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVA 99 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 TE G + + + +L+ + +SV P G+LR+ + G + + + Sbjct: 100 PTEAGREYYERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAER 159 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 Y D+ +++ L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL Sbjct: 160 YADVTVEITLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKH 219 Query: 178 REPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P +I +L H+ I L+ + + + V P + VN +L ++ Sbjct: 220 GTPATIADLQHHSFIRREPNETLLDAAISEVAAASRV------PMSGNVIVN-HLEGLRV 272 Query: 235 CVL-GSGIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNF 289 VL G+GIALL +V ++ LV ++ D + P +Y Y + K+++F +F Sbjct: 273 AVLGGAGIALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDF 332 Query: 290 I 290 + Sbjct: 333 L 333 >gi|331017322|gb|EGH97378.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 297 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VAR SFT AA +L ++ S++S + LE +G++L R R + TE G + Sbjct: 7 NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGEQ 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +L+ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + AP Y ++ PL Q+ Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEHHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +P + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289 >gi|306841126|ref|ZP_07473844.1| LysR family transcriptional regulator [Brucella sp. BO2] gi|306845476|ref|ZP_07478049.1| LysR family transcriptional regulator [Brucella sp. BO1] gi|306274127|gb|EFM55946.1| LysR family transcriptional regulator [Brucella sp. BO1] gi|306288847|gb|EFM60161.1| LysR family transcriptional regulator [Brucella sp. BO2] Length = 297 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G +L R R +LTE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +++ Q + E+S G+++++ ++ +L +F L +P+I + + Sbjct: 66 YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ + +Q SSLI ++L H AP + +P ++L Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + ++++ + P +++NS ++ + G G +LP Sbjct: 185 TDRPCII--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I ++ L+ +++ I +Y YP K++A +F+ Sbjct: 243 FIAEEEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289 >gi|107028377|ref|YP_625472.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686373|ref|YP_839620.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105897541|gb|ABF80499.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652088|gb|ABK12727.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 307 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 16/264 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L +F V R+GSF+ AA +L + +++SR+I E +G +L +R R L + + Sbjct: 2 LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L + ++ +IE Q + +P+G +R+A L + + L EF YP Sbjct: 62 GLALFERYAPALDRI--FEIERQHADGQEPAGTVRVAAMAGLFEVIKLEWLAEFYARYPR 119 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I +LD+ D+ + D A+R+ S + R++ M A+P YL+ P Sbjct: 120 ISIDFLLDDTPSDLIAERIDLALRIGIETGGSFRV-RRIAPGTMILAASPAYLERRGTPR 178 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 + +EL H+ +T + M W + P G IS VN +MQ C+ G Sbjct: 179 TPRELADHDCLTVSSRQGRSM----W--RLQGPRGTQEISIDSRFSVNDMRVVMQACLAG 232 Query: 239 SGIALLPDYIVK---DNPNLVRIM 259 GIAL+P + D L R++ Sbjct: 233 LGIALVPQVLAAAAIDEGKLARVL 256 >gi|291281174|ref|YP_003497992.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str. CB9615] gi|290761047|gb|ADD55008.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str. CB9615] Length = 300 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 12 NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 71 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ T+ + L+ L PSG +RI + L L F YPDI+ Sbjct: 72 EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 131 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 132 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 191 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239 +L H I F D + W L D+ I +P +SY+ + LG Sbjct: 192 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHQPEGQWAFSDSYME-AEAARLGL 245 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G+A +P +V D+ L+R+++ ++ YP Sbjct: 246 GLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 283 >gi|240949166|ref|ZP_04753513.1| putative HTH-type transcriptional regulator [Actinobacillus minor NM305] gi|240296469|gb|EER47105.1| putative HTH-type transcriptional regulator [Actinobacillus minor NM305] Length = 299 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 144/296 (48%), Gaps = 10/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+QL +S + S+ ++ LE + ++L +R R +T TE G Sbjct: 5 NAISLFCKVIETQSFTQAAQQLDISLAMASKLVAQLEEHLNVRLLHRTTRKITPTEAGLL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++L+ + S +GKL + +D G + +L +FL YP I++ Sbjct: 65 YYQRCQPILNELKEADDSINNISENLTGKLSFSLPMDFGSRFVAPHLGKFLEAYPYIELH 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ +D+ + D +R+ + ++ SS++ +K+ H A+P YL P +IQ+ Sbjct: 125 LEFNDRRVDVVSEGFDLVLRVGR-LEDSSIVAKKIAESHQIIVASPEYLAIHGTPRTIQD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 LD+H + + + DF++ R + RI N+ S++Q GI +P Sbjct: 184 LDQHTCLLYEN---HQTWDFSFGEETLRYKAKGRIYS---NNGYSLVQMAKDHQGIINIP 237 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 +V N L+ I+E + + YP + K+K F +F+ ++ K Sbjct: 238 KCLVTKELKNGELIPILEHLDQRKLDISLLYPNRRYLSPKVKVFIDFLATLMKEQK 293 >gi|78066424|ref|YP_369193.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967169|gb|ABB08549.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 305 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 131/291 (45%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R+F + +GS T A++ L+ +S + LE +G +L R R L+LTE G Sbjct: 6 SMRIFTRIVETGSLTRASDTTGLTTPRVSAMLRTLEQHLGCRLLNRTTRRLSLTEDGQSY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V +++ + + + P G+L++ + + +L L FL PDI I+L Sbjct: 66 YERCIAVLREIDDMEASVSRARSAPRGRLKVNLPPAMAKQILVPALPAFLASNPDITIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ID+ + DC +R+ + S LI +++ + AAP Y++ P ++ +L Sbjct: 126 GATDRHIDVVGEGVDCVVRI-GALDDSGLIAKRIGDLTTCTCAAPSYIERYGVPETVGDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H I + P W +D GE RI + + VN + + V G G+ Sbjct: 185 TRH--IAVNHVSPDTGRPRIWDFVID---GEARIAQMCASVAVNDADTYIACGVAGIGLI 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V + L ++ DV +P + YP KLK F +++ Sbjct: 240 KTSLYLVTPYLASGELREVLTDVNSPPRPISVVYPPNRHIPAKLKIFVDWL 290 >gi|116048800|ref|YP_792400.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584021|gb|ABJ10036.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 314 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA++L L+ + +SR ++ LE + +L +R R + LTE G + Sbjct: 6 NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +PSG L++ +GQ+ L + ++ YP++ L Sbjct: 66 LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N+ DI + D ++ + + S + + + + A+P Y+ P EL Sbjct: 126 TLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPRLPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241 H + L+ M WL D P G+ ++C+ QVN+ ++ + V G GI Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + + +LVR++ VY YP K++ + F+ Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFL 291 >gi|313106021|ref|ZP_07792280.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310878782|gb|EFQ37376.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 304 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D L F V+ GSFT AAE++ S+ +S++I LE ++G+ L +R R L+LT G Sbjct: 3 DLDDLAAFAVLHDLGSFTRAAERVGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + E + + + G++R+ + LG+ L L++F +P ++ Sbjct: 63 AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L N D+ + D AIR Q + L+ R L + A+P YL EP Sbjct: 123 VELDLYNGLRDLVGEGFDLAIR-SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 EL + + L WL + R+S +++ S+++ L G+GIA Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRRHRLERVRVSGFLASNHYSLLKKAALAGTGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LP Y+V D + L ++ D T S ++ +P Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHP 272 >gi|261339735|ref|ZP_05967593.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] gi|288318564|gb|EFC57502.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] Length = 310 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 127/281 (45%), Gaps = 20/281 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V + +F+ A + +S S +SR I LE +G +LFYR+ R + TE G Sbjct: 12 LLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAMIPTESGHLFI 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + LE + E+ E + +PSG +RI + GQ + L YP + I+L Sbjct: 72 RHARAIAGNLEDARREMDERAGEPSGVIRINGPVFFGQKHIAPGLAGLAARYPRLSIELT 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ID D AD R+ + SS R H A+P YL+ P ++L Sbjct: 132 LTDDFIDPHRDAADLIFRI-GALTDSSFHARGFGQQFYHLAASPAYLRQYGAPQGPEDLS 190 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242 +H+ + + G P WL V +P E P + N+ +++ + G GI Sbjct: 191 RHHCLVYRGSSGPN-----RWL--VRQPGHEWTHYPVAPLMTSNNAETLLVAALGGMGIV 243 Query: 243 LLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEA 276 L PD++V D + LV ++ D + T ++ YP A Sbjct: 244 LFPDWLVSDKLKSGELVALLTDRECSINTEPQSIAAIYPNA 284 >gi|254295876|ref|ZP_04963333.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157805909|gb|EDO83079.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] Length = 314 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 142/292 (48%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + + Sbjct: 1 MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + +SV P G+LR+ + G + + + Y D+ +++ Sbjct: 61 ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEIT 120 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL P +I +L Sbjct: 121 LSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADL 180 Query: 187 DKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 H+ I L+ + + + V P + VN +L ++ VL G+GIA Sbjct: 181 QHHSFIRREPNETLLDAAISEVAAASRV------PMSGNVIVN-HLEGLRVAVLGGAGIA 233 Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 LL +V ++ LV ++ D + P +Y Y + K+++F +F+ Sbjct: 234 LLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 285 >gi|170721262|ref|YP_001748950.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169759265|gb|ACA72581.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 294 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 137/290 (47%), Gaps = 10/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V +GSFT AA++L +S+ S+SR++ LE +G++L R R L T G Sbjct: 4 YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEGRLGVRLLNRSTRRLDATPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +++ + ++ + G LR++ + L L EFL L+P + + Sbjct: 64 HYYQSALRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMAHLGCLLTEFLRLHPQVDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ SSLI R++ + A+P YL+ P Sbjct: 124 EVDLSDRPVDLIGEGYDLALRI-GALEDSSLIARRIAGVERVYCASPAYLQARGVPQRPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H+ + +G W T R ++ N+ + + G+ Sbjct: 183 MLAEHDCLPYGH-----SRQVQWQFTQGGRSQAIAVAGRMRANNGELLRDAAIAAMGVTY 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV + LV +++D P+ + YP+ + ++ F F+ Sbjct: 238 LPTFIVGQALADGRLVSVLQDWTPPALQLSAVYPQHRQVARPVQGFVEFL 287 >gi|317406656|gb|EFV86826.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 308 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 100/187 (53%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A +GSF AAE+L+L++S++ + I+ LE +G +LF+R R +LT+ G + Sbjct: 14 IEVFVQAAEAGSFALAAERLNLTRSAVGKSIARLEARLGARLFHRTTRQQSLTDAGQAYY 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +L + EL P G+LR++ + G++ + L+E +P +QI++ Sbjct: 74 DRCVRALAELYDAEAELDSGRRSPQGRLRVSAPVVFGRHCVAPVLRELAARHPQLQIEIS 133 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR+ S+SL+ R+L M A+P Y+ P ++ E+ Sbjct: 134 FNDRVVDLIEEGYDLGIRIGALPDSASLVARRLGLQTMGIGASPAYIAAHGRPQTLDEMR 193 Query: 188 KHNLITF 194 +H + + Sbjct: 194 QHVGVAY 200 >gi|313107434|ref|ZP_07793624.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|310880126|gb|EFQ38720.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 303 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F + G+F AA+ L L ++S+++ I LE +G++L R R ++LT G Sbjct: 4 FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + P G+LR+ LG+ + L EF YP++++ Sbjct: 64 AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL +++ +D+ + ADC +R+ + + SSL+ R L + A+ YL+ P + Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLQQVTCASAAYLERHGHPRQLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H + + P F++ +VD R P S + VN+ + + C G G+ Sbjct: 183 ELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + +L +++ + + PS ++ YP + + +++ F +++ Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290 >gi|294625560|ref|ZP_06704186.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600125|gb|EFF44236.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 303 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 17/290 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +R+F + SFT AA + + +S+ ++ I+ +E +G++L R R + T G Sbjct: 4 FDAMRLFVRIVERRSFTAAANDMQIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 H+ + ++ + + V P G LR+ L ++ L L F YP IQ+ Sbjct: 64 LFHQRCMRILDDVDDAEGGFR--GVAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQIQL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R P++ S L+ R++ + A P YL+ P ++ Sbjct: 122 VMSESDRWVDLVEEGIDCVLRY-GPLRDSELVARRVAMLERLTCATPQYLQRFGLPAQLE 180 Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L+ H + IT G + P + L T P S L V S + LG Sbjct: 181 ALEHHRMVGLRSITTGVVTPLEFQTAQGLRTFALP------SPLSVTGTESYLAGIRLGL 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI+ +P + V + LV I+ D PS V Y A + + +++ F Sbjct: 235 GISQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVF 284 >gi|237731338|ref|ZP_04561819.1| LysR family transcriptional regulator [Citrobacter sp. 30_2] gi|226906877|gb|EEH92795.1| LysR family transcriptional regulator [Citrobacter sp. 30_2] Length = 297 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 14/288 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +VAR SFT AA +L +SQS++S I GLE + ++L R R + TE G Sbjct: 5 NFNDLYYLIIVARERSFTRAAAKLGVSQSALSHAIRGLEERLDVRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN----LKEFLLLY 119 +L S + +ET + L + + +G +R+ LG++ LQ L+ FL Y Sbjct: 65 ERLINSISPRFDDIETELLALTDVRQRVAGNIRLT----LGEHALQSTVWPALEPFLQAY 120 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PD+ +++ +DN DI D IRL + + + R M +P Y + Sbjct: 121 PDVNVEMTIDNSLTDIVTGRYDAGIRLGEQVAKDMVAVRIGPDWRMVVVGSPVYFARHGK 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P + +L H+ I +P + W D R+ L N+ + + G Sbjct: 181 PKTPHDLQNHSCINM--RMPTLGGLYAWEFAKDGQDLRVRVEGQLIFNNLPPRISAAMAG 238 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 G+A +P+ V+ L +++ED P Y YP ++T Sbjct: 239 MGLAFVPEDTVEQAVAEGALEKVLEDWCEPFPGYYLYYPSRKQHTAAF 286 >gi|259909148|ref|YP_002649504.1| transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96] gi|224964770|emb|CAX56287.1| transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96] Length = 297 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 14/191 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V SFT AA+ L + + ++S+ I LE ++G+KL +R R L++T +G Sbjct: 7 IFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEG------ 60 Query: 70 TSEVYHKLETTQIELQE--SSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 E+Y + +T ++ E +SV P+ G+LRI + L +L +L EF LYP I+ Sbjct: 61 -DEIYQRAKTLLNDVNEMMASVSPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIE 119 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L ++ D+ + DC IRL + + SS I R++ + M AAP YL P++ Sbjct: 120 IVLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTP 178 Query: 184 QELDKHNLITF 194 +L+ H I F Sbjct: 179 DDLEHHKAIHF 189 >gi|93006100|ref|YP_580537.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92393778|gb|ABE75053.1| transcriptional regulator, LysR family [Psychrobacter cryohalolentis K5] Length = 303 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GSF++AA L LS +S+ +S LE ++ +L R R ++LTE GS Sbjct: 5 DAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNSRLLNRTTRKVSLTEAGSH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ + +L P G LRI+ + + + +F + YP +++ Sbjct: 65 YFGHAQQILLSIDDMESKLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQIHYPLVKVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +DI + D A+R+ + ++SSSLI +K+ I + AAP YL P ++ Sbjct: 125 LQLTDRKVDIVEEGFDVALRIGQ-LKSSSLIAKKVAPIRVMLCAAPDYLNKHGTPTQPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + +H + + + +D L + S L+ N+ ++ + G+GI L P Sbjct: 184 IAEHRYLHYSYMNMDGKDDIYQLLKAKY---LKQGSELRSNNGDVLVDAAIAGAGIVLQP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I+ + + LV ++ + + +Y Y K++ F +F+ Sbjct: 241 TFIISEALSSGKLVVVLPKLEPEALGLYAVYAHRKLLPHKVRCFIDFV 288 >gi|254419420|ref|ZP_05033144.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] gi|196185597|gb|EDX80573.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] Length = 301 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 127/288 (44%), Gaps = 16/288 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F+ V R GS + AA +L +SQ SI+R I LET +G KLF R RGL+ T+ Sbjct: 7 WDLYRTFHAVLREGSLSGAARRLDMSQPSIARHIDALETALGAKLFLRTPRGLSPTDAAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESS------VKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 +L + +L T L+ ++ SG +RI+ + + L L Sbjct: 67 EL----KPLAERLAATSAALRRTAEGGGGGGALSGTVRISASEVVAVEHLPPILARMRQA 122 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + ++L N D+ AD A+R+ +P Q +L+ R + + + +A YL Sbjct: 123 HPGLALELSPSNALDDLLQRKADVAVRMVRPEQ-QALVSRHVGALAIGLHAHRDYLARRG 181 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ +L H+LI + P + R L+V+S ++ + G Sbjct: 182 TPRTLADLKDHDLIGYDVETPAIRAAVQQYPALSRD-----AFALRVDSDVAQLAAIRAG 236 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI + + P+LVR++ D + + L+ + +A Sbjct: 237 FGIGICQTVVAARQPDLVRVLPDAFHMALETWIVMHGDLRGNARCRAV 284 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076554|gb|ADJ65953.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 7/245 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V GSF+ AA L+ +S +SR+++ LE +G++L R R + +TE G Sbjct: 3 DLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 S E +E+ E + +P+G+LR+++ + + L L FL +PD+ Sbjct: 63 SAFF-THCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D A+R+R ++ SSL+ R T A+P Y++ + Sbjct: 122 RLELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHGPFDT 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSG 240 +Q L + G L + W L D + E + V + +MQ + G G Sbjct: 182 VQSLQGQRGLGPGGLPGQAQ---RWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVG 238 Query: 241 IALLP 245 +ALLP Sbjct: 239 LALLP 243 >gi|30064575|ref|NP_838746.1| putative DNA-binding transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|56480295|ref|NP_709039.2| putative DNA-binding transcriptional regulator [Shigella flexneri 2a str. 301] gi|30042834|gb|AAP18557.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|56383846|gb|AAN44746.2| putative LYSR-type transcriptional regulator [Shigella flexneri 2a str. 301] gi|332752447|gb|EGJ82836.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-671] gi|332754325|gb|EGJ84691.1| HTH-type transcriptional activator aaeR [Shigella flexneri 2747-71] gi|332999320|gb|EGK18906.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-272] gi|333000301|gb|EGK19884.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-218] gi|333014648|gb|EGK33995.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-304] gi|333014689|gb|EGK34035.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-227] Length = 303 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 111/238 (46%), Gaps = 4/238 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSANLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + + E R I + R N ++++++ G+GIA +P Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 234 >gi|294625710|ref|ZP_06704331.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666297|ref|ZP_06731547.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600014|gb|EFF44130.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603948|gb|EFF47349.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 298 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AA+ L S +S++RQ++ LE +G +L R R ++LT GS Sbjct: 5 DAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + +++P+G LR+ + G L L F YP +++ Sbjct: 65 YYQRCLQLLADLDDLEATIGAQALEPAGMLRVNAPVSYGIERLGALLPGFRARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P + LI R+L + + A A+P YL P Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRILACASPAYLARAGTPQHPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 +L H + + P + A P G+ + L+ N+ + + G GI Sbjct: 183 DLAGHECLLY-HYSPNGDD-----ARFQGPDGDIDVRLHGGLRANNGHVLNAAALAGQGI 236 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + PD++ + + LVRI+ + ++ Y K+++F +++ Sbjct: 237 VMQPDFLAEPHIAAGRLVRILPEYALGEIGIFAVYTSRSHLAPKVRSFIDYL 288 >gi|262278167|ref|ZP_06055952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258518|gb|EEY77251.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 308 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 135/293 (46%), Gaps = 12/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + +F +VA + SF+ AA +S +++SR I+ LE + LF R R + LT QG Sbjct: 10 FSSVELFCLVAENESFSKAALHAGVSPAAVSRSIARLEKHLATPLFVRTTRQVRLTPQGK 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +++ + +L+ +PSG +RI+ G + L +F YP I++ Sbjct: 70 MYFEECKQALNQILEAEQQLKNQKQQPSGLVRISVPTPYGHYRILPLLAKFSKQYPAIEV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L NK++D + D AIR R S+LI R+L + A+P YLK P SI+ Sbjct: 130 DVQLTNKNVDFIAEGYDLAIRGRL-FADSNLIARQLEQAELIVVASPQYLKQFGIPQSIE 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 +L H I F ++P ++ WL + I E +I CL + L + +G Sbjct: 189 DLQHHQCIQF--VLPSTGKNVQWLFNSNHQIIEYQSTGKIRCL--DDILGTITLAKHSAG 244 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +IV+ N L+ I+ S YP + ++ F +F+ Sbjct: 245 LLQTYRFIVEKELKNGELIEILTKFSGTSRPFSLLYPLKKHESFHIRVFIDFL 297 >gi|148975138|ref|ZP_01812062.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] gi|145965062|gb|EDK30312.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] Length = 298 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 35/304 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA SFT AAE L +S+ +SR + +E + +L +R R ++LT G Sbjct: 7 MRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTAAGEVAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ H+ ++ + SG +RIA I L Q++L +++F +P+I ++L Sbjct: 67 QRCEKILHETAELEVTSLNQTDDLSGTIRIAAPIGLTQHMLLDVVEQFTERHPNITVELF 126 Query: 128 -------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 L ++ IDI++ Y D +P SLI RKL+ I A+ YL EP Sbjct: 127 ASDRFTQLVDERIDIALRYTD------QP--DDSLIARKLMVIDSVVCASQAYLDKHGEP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRIS-CLQVNSYLSIMQYCV 236 +++ L +HN C N W D +S ++ N + + Sbjct: 179 ETVEALRQHN----------CFRHLNVSKWDFVKDNQHYSVEVSGTIKANDVGVLTRAAQ 228 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G G+ LP + N L+RI++D ++PS ++ Y L + +L R FI Sbjct: 229 HGKGVVRLPCDLANPLIANGQLIRILDDFVSPSSVLWAVY---LSRSYQLPIVRQFIDFA 285 Query: 294 ARDW 297 A W Sbjct: 286 AEAW 289 >gi|170734986|ref|YP_001774100.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821024|gb|ACA95605.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 330 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 18/247 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F AR SFT A ++L+++QS++SRQ+ LE ++ I+LF+RH R LTLT++G + Sbjct: 17 DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ S LE+ +L S + S + ++TT+ L L F YPDI ++ Sbjct: 77 LYDAISFALSDLESVVGKLSSSVGQRS--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++ D+ A+R P S+ L + ++V A +P + + + Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDDTDVLFRERVV-----AVCSPSLMTAAGDAV 189 Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 S+Q +LDKH L+ D P+ ++ + + + +G PR+ L + Y ++Q V Sbjct: 190 SMQPADLDKHVLLHLDD--PRGEWPWHGWSHLLKALGVPRLRPAGALHFSQYDQLVQAAV 247 Query: 237 LGSGIAL 243 G GIA+ Sbjct: 248 DGHGIAI 254 >gi|21233154|ref|NP_639071.1| LysR family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770094|ref|YP_244856.1| LysR family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21115001|gb|AAM42983.1| transcriptional regulator lysR family [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575426|gb|AAY50836.1| transcriptional regulator lysR family [Xanthomonas campestris pv. campestris str. 8004] Length = 308 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 14/296 (4%) Query: 1 MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 MS D W+ R F V +GS + AA QL ++Q ++ +I+ LE +G LF R GL Sbjct: 1 MSHDIAWEDQRTFLAVLDTGSLSAAARQLGVTQPTVRARIASLEAALGTTLFTRAITGLI 60 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEF 115 T + L + + + ++ +S P +G +RI+ + +G +L L Sbjct: 61 PTSEARGLEAAARTMA---RASAMFVRLASAPPGLVAGTVRISVSDFVGVEVLPAMLARL 117 Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 ++P I +L+L N D+ D A+R++ P Q +L+ RK+ I + +A Y+ Sbjct: 118 RQVHPHIVTELVLSNTPADLLEQEVDIAVRMQPPTQ-GALVARKVGAIALGLFAHRDYIA 176 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P +++ L +H LI + D + + + R++ + +S+ + + Sbjct: 177 RRGAPATVEALLEHELIGPA----RNRADLSLARALHPHLLRDRLAT-RTDSHPAQLALA 231 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GIA+ I + +P LV+++ +V P+ T + E L++ +++A N + Sbjct: 232 RAGLGIAIAQCPIAQADPCLVQVLPEVALPALTTWIVTHEDLRDVPRIRATFNHLV 287 >gi|330818506|ref|YP_004362211.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327370899|gb|AEA62255.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 310 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 11/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + SFT AA + +S+ ++ I +E +G++L R R +T T G Sbjct: 5 DAMRLFVRIVERRSFTAAANDTDIPRSTATQVIRQMEDRLGVRLLQRTTRTVTPTLDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + L + L +P G LR+ L ++ L L EF +P++QI Sbjct: 65 YYRSCMSILDDLHEAEAAL--GGKQPRGMLRVDVQGTLARHFLLPALPEFFRRFPELQIT 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ I++ + DC +R +Q + L+ RK+ T+ AAP YL+ P SI+ Sbjct: 123 MSESDRFINLVEEGVDCVLRY-GVVQDTELVARKVATLERLTVAAPAYLEVHGRPDSIEA 181 Query: 186 LD--KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L+ H ++ L + +++ D R + P L V S +LG GI+ Sbjct: 182 LETGTHRMVGIRTLSTGRITPLEFVSEGDLRHVVLP--DTLSVTGPESYRDSTLLGLGIS 239 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P + ++ + LV ++E PS V+ YP + + +++AF Sbjct: 240 QMPRFHIEADLASGRLVTLLESTPPPSMPVWLLYPHRRQLSPRVRAF 286 >gi|309778713|ref|ZP_07673486.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308922421|gb|EFP68045.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 304 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 3/186 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R+F V +G FT AA L+ SQ +S+ I+ LE +G++L +R R LT +G + Sbjct: 8 EMRIFKAVVEAGGFTAAAHALNASQPFVSQTITHLERRLGVQLLHRSTRKQRLTSEGERF 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E Q E Q + +P+G LR++ G + + L FL YP + ++ Sbjct: 68 LASCHDLLEAVE--QAEAQIRATEPTGDLRVSVPQAFGIDQIVPALPGFLSTYPKLTVRF 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +++ D D A+R+ + +Q SSL RKL + AAP YL P++ Q L Sbjct: 126 SLSDSLVNLIEDNFDVAVRMGR-LQDSSLRSRKLCELQRIVVAAPSYLARHGMPVTPQGL 184 Query: 187 DKHNLI 192 D+H + Sbjct: 185 DRHQCL 190 >gi|221065427|ref|ZP_03541532.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220710450|gb|EED65818.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 291 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 134/274 (48%), Gaps = 11/274 (4%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 SF A L +S S++ + ++ LE ++G++LF+R R + LT++G+ H + +L Sbjct: 18 SFAEAGRALGISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQEGTLFHERCRRILDELH 77 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + +Q ++ P G+LR++ +G L L EF YP++++ L ++ +D+ Sbjct: 78 DARAAMQAAAEAPRGRLRVSLPT-IGYRFLLPVLPEFQARYPEVELDLDFNDHLVDVVEA 136 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D IR + S L+ R+L A+P YL PL+ +L +H+ + + L Sbjct: 137 GLDVVIR-SGELADSRLVARRLGPFRFILAASPTYLAERGLPLTPADLARHSSLRYRFLN 195 Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255 +E++ PI L N+ +++ V G G+A +PD++ +D L Sbjct: 196 SGKLEEWTLPGLPAMPI------SLVCNNMEAMLGAAVSGLGLAYMPDFLARDALARGEL 249 Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +++ +T S +P + + + K++AF +F Sbjct: 250 QQVLAQQLTHSGQFSALWPSSRQLSPKVRAFVDF 283 >gi|187930592|ref|YP_001901079.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|187727482|gb|ACD28647.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 298 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 20/287 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q ++ R + LE +G+ LF R +GL+ TE Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFLRTQQGLSPTEAAL 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L LE T L ++ G +RI + + +L L + YP Sbjct: 68 SLR----PFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L+ N+ D+ AD A+R++ P Q L+ R + I + +A YL P Sbjct: 124 ELTLELVPSNRMEDLLRREADIAVRMQPPSQ-GVLVARHIGAIELGIFAHRRYLAQRGTP 182 Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +++EL H LI + + W+ + L+ +S L+ + Sbjct: 183 STVEELAAHTLIGYDKENAFLRSMRAQLPWV--------QRNRFALRTDSDLAAIAALRA 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G GI +V++N +LVR+ D I+ + + E L+++ + + Sbjct: 235 GFGIGFCQIGLVRNNADLVRLFGDQISITLDTWLAMHEDLRDSPRCR 281 >gi|145631392|ref|ZP_01787163.1| DNA topoisomerase I [Haemophilus influenzae R3021] gi|144983051|gb|EDJ90555.1| DNA topoisomerase I [Haemophilus influenzae R3021] Length = 305 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 137/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + I+L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKIRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSESYDLALRIGY-MEDSSLVSRKIGTTTVHFVASPNYLEANGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNSMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ ++ + ++ YP K++AF F+ Sbjct: 240 PKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|301046176|ref|ZP_07193350.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|300301833|gb|EFJ58218.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] Length = 299 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTHSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|257093324|ref|YP_003166965.1| LysR family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045848|gb|ACV35036.1| transcriptional regulator, LysR family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 295 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 9/293 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F VA GSF+ A QL +++S ++RQI+ LE +G+KL R R L LT G+ Sbjct: 5 EAMHLFMRVAELGSFSAVALQLGVARSVVTRQIAALENHLGVKLMARSTRRLALTSAGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++T + ++ E + P G +RI+ + G L L +F +P++ + Sbjct: 65 YLEKCRVILNLVDTAEADVAEERLTPRGNIRISLPLSYGIKRLAPLLLDFSQRHPEVSLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ I++ + D AIR+ + + + RK+ + + AAP YL P E Sbjct: 125 MDYSDRRINLIEEGIDLAIRITRRLDPGD-VARKIGSSRLLVVAAPDYLARHGRPQHPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H + + +W VD + + S + N+ + + LG GI L Sbjct: 184 LAHHECLGYS----GSGAAQSWHFLVDGQLQTYLLRSRINANNGDVLSEGAALGLGITLQ 239 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 PD+IV D + R I+ D P +Y P + +++ +F+ A Sbjct: 240 PDFIVADLLAVGRVEQILADFPIPELGIYAMLPGNRHVSHRVRVLMDFLAANA 292 >gi|221200466|ref|ZP_03573508.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221206146|ref|ZP_03579160.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221174158|gb|EEE06591.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221179807|gb|EEE12212.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 318 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 10/231 (4%) Query: 17 SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76 +GSF AA QL ++ +++S+ ++GLE +G++L R R L LTE+G R Sbjct: 19 AGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEAFLRHARIALET 78 Query: 77 LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136 L+ + +P+G++RI+T+ G N + L L YP + +++ D++ IDI Sbjct: 79 LDAAIDTVSARRAEPAGRVRISTSAAFGHNHVLPALPALLARYPALSVEVDFDDRVIDIV 138 Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT--- 193 D D A+R I S+L+ R + ++ A+P YL N P + L H LI Sbjct: 139 RDGYDIAVRGGN-IPDSALVTRPICRLNTVLVASPDYLANHGVPETPDALHAHRLIARRF 197 Query: 194 -FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 G + P D + T+D P G+ + L +++ S++Q GIA Sbjct: 198 LSGQVAPWNFTGDDKSITTID-PSGK---AMLTLSAPESLVQAACDSVGIA 244 >gi|172064841|ref|YP_001815553.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997083|gb|ACB68000.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 345 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 144/289 (49%), Gaps = 15/289 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66 F VA GSFT AAE L + + ++SR + LE ++ +LF R R LT +G + Sbjct: 35 AFVAVASEGSFTKAAELLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94 Query: 67 -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H+ +++ + +EL++ P G +RI++ + G+ ++ L++F YPDI I Sbjct: 95 CHQGVAQIVEAM-NDMLELRQG--PPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIIID 151 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD++ ID+ + D + R + I+ SS+I R+L+ + M AAP Y+ P I + Sbjct: 152 LLLDDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIDD 210 Query: 186 LDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 LD+H I F + E +FN + + + R L N +++ + G+GIA + Sbjct: 211 LDQHECINFRFASGRVFEWEFNVDGRMQKYLPTSR---LTFNDADLVLRAVLNGAGIAQM 267 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y ++D + LV + + Y CY +++ F +F+ Sbjct: 268 AGYQIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFM 316 >gi|27380659|ref|NP_772188.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27353824|dbj|BAC50813.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 297 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 126/277 (45%), Gaps = 14/277 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR SFT AA QL +SQS++S + LE +G++L R R + TE G + Sbjct: 7 NDLLAFLAVARERSFTRAAAQLGVSQSALSHTVRALEERLGLRLLTRTTRSVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + +++ L P+G +RI T Q +L L L YPDI+++ Sbjct: 67 LLRNIGPRFAEIDAELSALTALRETPAGTVRITTGEHAAQTILWPTLARLLPRYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++D DI + D +RL + + + R + M +P Y +P Q+ Sbjct: 127 LVVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPEMRMAVVGSPAYFTARGKPKRPQD 186 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN I T+G L E V R G+ L N+ L M + G G Sbjct: 187 LTEHNCINLRLPTYGGLYAWEFEKRGHAMKV-RVDGQ-----LVFNTGLLRMNAALAGLG 240 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 +A +P+ +VK + L+R++ D P + YP Sbjct: 241 LAYIPEDLVKREIADGRLIRVLADWCAPFAGYHLYYP 277 >gi|17547217|ref|NP_520619.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429519|emb|CAD16205.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 26/287 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W+ F V +GSFT AAE L + +SS S +S LE +G++L R R L LTE Sbjct: 3 TMEWNDWETFCRVVEAGSFTAAAEALGIPKSSASAAVSRLEASLGVRLLTRTTRQLRLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 GS + + ++ +L + +S SG LRIA ++G L + + L +P+ Sbjct: 63 AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQHLTEPVCQTLARFPN 122 Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +QIQ+ + + D ++ Y + + + + SSL+ R++V I YAAP L R P Sbjct: 123 LQIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAP 181 Query: 181 LSI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---------NSYLS 230 L+ +L ++ D D +W V RP G P +V N+ + Sbjct: 182 LAAPADLSGWPCLSGPD-------DASW---VFRPAGAPAAEPFEVPIQPRLQTLNAEMR 231 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + V G G+A + + + LVR++ D VY P Sbjct: 232 -ARAAVRGLGVARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMP 277 >gi|15596073|ref|NP_249567.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|254239229|ref|ZP_04932552.1| hypothetical protein PACG_05420 [Pseudomonas aeruginosa C3719] gi|9946775|gb|AAG04265.1|AE004522_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126171160|gb|EAZ56671.1| hypothetical protein PACG_05420 [Pseudomonas aeruginosa C3719] Length = 314 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA++L L+ + +SR ++ LE + +L +R R + LTE G + Sbjct: 6 NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +PSG L++ +GQ+ L + ++ YP++ L Sbjct: 66 LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N+ DI + D ++ + + S + + + + A+P Y+ P EL Sbjct: 126 TLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPKLPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241 H + L+ M WL D P G+ ++C+ QVN+ ++ + V G GI Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + + +LVR++ VY YP K++ + F+ Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFL 291 >gi|294650642|ref|ZP_06727996.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|292823433|gb|EFF82282.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 295 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 138/311 (44%), Gaps = 55/311 (17%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++VF AR GSF AA +L++S ++IS QIS LE E+GIKLF R R +TLT++G K Sbjct: 9 NSIKVFEATARLGSFKAAAHELNVSPTAISHQISELEKELGIKLFIRGFRTVTLTDEGKK 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V+ + +L+ T +EL S + I+TT L L F YPDI++Q Sbjct: 69 LAEVSIRLISELKQTLLEL----TTYSKHITISTTNAFAAMWLVPQLHVFKTQYPDIEVQ 124 Query: 126 LILDNKDIDISMDYA-DCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D++ IDI D D AIR +K IQ S +I + Y +N Sbjct: 125 VKADDRLIDIDHDLKFDMAIRYGFVDKKHIQVSKIINDQFGLFATQQYWRDREEENSDVK 184 Query: 181 LSIQELDKHNLIT----------FGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSY 228 L + + NL+ FG + P ED N Sbjct: 185 LLVTQWKNDNLLKHDQSDILLQRFGQVCPTVEYFEDEN---------------------- 222 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV----YFCY----PEALKNT 280 ++Q + G G+A + +V+ ++E +PSF + CY P+ N Sbjct: 223 -QVIQAALAGQGVAYVSKILVQQTVTQGWLLE---SPSFQIGGMDNLCYYSVIPKRNLNH 278 Query: 281 GKLKAFRNFIF 291 + AF+N+I Sbjct: 279 PSVIAFQNWIM 289 >gi|149376184|ref|ZP_01893949.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] gi|149359589|gb|EDM48048.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] Length = 297 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 8/274 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F A S SF AA +L +S +++R + LE G LF+R+ R + +T G K Sbjct: 6 EMLRIFCTAAESRSFKEAANRLGISPQAVTRAVKELERLQGELLFHRNTRHIQVTLVGEK 65 Query: 66 LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + E Q +S + G++RIA + G L L E ++P + I Sbjct: 66 FAAIAKERLRAVDELFQTSAPDSGNELQGRVRIAAPVGFGHQCLMPALMELSTVHPQLDI 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D IR+ ++ S I R+L I+++ A+P + P SI+ Sbjct: 126 DLTLSDERVDVVDEKIDIGIRI-GFMRDSRFIARQLAKINLYVVASPDLIDRVGRPASIE 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L+ +L G + + + W+ ++DR P I+ + + + G G A + Sbjct: 185 DLN--HLPVTGLVDRNTGKLWPWVFSMDRQ-WMPSITRFRSADAEAELMGVQNGLGFAQI 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 PD++ +D LVR++E+ + +Y P+ Sbjct: 242 PDFLAQDLLRQEKLVRVLEEAEPVPWDLYIYRPQ 275 >gi|187928323|ref|YP_001898810.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|241662901|ref|YP_002981261.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|309782177|ref|ZP_07676907.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|187725213|gb|ACD26378.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gi|240864928|gb|ACS62589.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] gi|308919243|gb|EFP64910.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 309 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 131/288 (45%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 6 QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LR+ G+ + + +F+ +PD+ + L Sbjct: 66 LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFIETHPDVSMTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L AAP YL+ P +++L Sbjct: 126 DLGDRVVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPSYLERRGVPTQVEQL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 HN + FG W+ ++S ++ + ++C+ G G+A Sbjct: 185 STHNCLAFG---ASANVQRGWVFQQGGKAVTVKVSGTMECTDGAVLREWCLQGYGLAWRS 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V + LV +++ P ++ +P+ +++ F +F+ Sbjct: 242 WWEVGHDIATGKLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289 >gi|107100334|ref|ZP_01364252.1| hypothetical protein PaerPA_01001359 [Pseudomonas aeruginosa PACS2] gi|218893155|ref|YP_002442024.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254245163|ref|ZP_04938485.1| hypothetical protein PA2G_06051 [Pseudomonas aeruginosa 2192] gi|296390770|ref|ZP_06880245.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313105759|ref|ZP_07792022.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|126198541|gb|EAZ62604.1| hypothetical protein PA2G_06051 [Pseudomonas aeruginosa 2192] gi|218773383|emb|CAW29195.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310878524|gb|EFQ37118.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 314 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA++L L+ + +SR ++ LE + +L +R R + LTE G + Sbjct: 6 NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +PSG L++ +GQ+ L + ++ YP++ L Sbjct: 66 LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N+ DI + D ++ + + S + + + + A+P Y+ P EL Sbjct: 126 TLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPKLPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241 H + L+ M WL D P G+ ++C+ QVN+ ++ + V G GI Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + + +LVR++ VY YP K++ + F+ Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFL 291 >gi|296389631|ref|ZP_06879106.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 311 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 143/303 (47%), Gaps = 28/303 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L F V G F A + + +S +SR+I+ LE + ++L +R R L LT Sbjct: 1 MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + E + + E SV+P G+LR++ + + + L L FL +P Sbjct: 61 EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR- 178 +Q++++L N+ +D+ + D A+R+R+ + +L+ R+L AAP + R Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHRL 180 Query: 179 -EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLS 230 P+ +++L + D AT+ P G EPR L V+ ++ Sbjct: 181 EHPVDLEDL---------PFLGAIHNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVL 228 Query: 231 IMQYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + V G G+ LLP+ Y ++ + +LVRI+ P T+ Y L + ++ A R Sbjct: 229 RKKAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIR 285 Query: 288 NFI 290 I Sbjct: 286 ALI 288 >gi|153840561|ref|ZP_01993228.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|149745776|gb|EDM56906.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] Length = 239 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + + G +R+ +G++++ + EF+ YP + I L Sbjct: 70 HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPSVSIDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D A R+ + + + + RKL+T+ M A+P Y++ P +EL Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPKHPKEL 188 Query: 187 DKHNLIT 193 +H +T Sbjct: 189 AEHRTLT 195 >gi|226942541|ref|YP_002797614.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226717468|gb|ACO76639.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 301 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 123/250 (49%), Gaps = 13/250 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F RS F+ AA +L ++ SS++R ++ LE+E+G L R+ R +++TE G + + Sbjct: 7 LKMFVETVRSAGFSAAARRLGIATSSVTRMVTALESELGTVLLNRNTRNVSVTEAGERYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + + G+L + ++ G+ ++ L L +P ++I LI Sbjct: 67 AHAVAILKAIEEADATITDRGSEARGRLSASVPVEFGRRVIAPRLGRLLDRHPALEISLI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ + AD A+RL + + ++ ++ A+P YL + ++L Sbjct: 127 LSDEIIDLLGERADVAVRLGTSMLNDDVVSLRIGEFRRWVVASPEYLAGRDRLVHPEQLV 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 +H+ +TF + F G+ RI L+ N+ + + + G G+A Sbjct: 187 EHDCLTFAYATTEPHWSFRK--------GDERIRVDVRGRLRSNNADILREAALAGRGVA 238 Query: 243 LLPDYIVKDN 252 LL D++V ++ Sbjct: 239 LLSDWLVGED 248 >gi|200387091|ref|ZP_03213703.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604189|gb|EDZ02734.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 300 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SNDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275 >gi|33598565|ref|NP_886208.1| LysR family regulatory protein [Bordetella parapertussis 12822] gi|33603512|ref|NP_891072.1| LysR family regulatory protein [Bordetella bronchiseptica RB50] gi|33574694|emb|CAE39348.1| LysR family regulatory protein [Bordetella parapertussis] gi|33577636|emb|CAE34901.1| LysR family regulatory protein [Bordetella bronchiseptica RB50] Length = 304 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 141/294 (47%), Gaps = 19/294 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF VAR SF AAE+L +S + +S+++ LE +G++L +R R +++T +G + Sbjct: 8 EDLRVFLHVARLSSFAAAAEELRVSTAYVSKRLRVLEGVLGVRLLHRTTRRVSVTREGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V ++ E+ + P G LR++ + G+N++ L + +P +Q++ Sbjct: 68 VFLWAQRVLDNVDQLMQEVAATRAVPRGLLRVSCSFGFGRNVVGPMLSRLVERFPALQVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D++ + D +R+ I + LI R+L H AAP YL P + +E Sbjct: 128 LEVFDRLVDVASEGFDLDVRVGDDI-APHLIARRLADNHRLLCAAPDYLARRGTPRTPEE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGI 241 L H+ + + D + R E R L N+ +++ V G GI Sbjct: 187 LAGHDCLVIKE------RDHPFGVWTLRAGAENRTIKVTGPLSANNGEIAVRWAVDGRGI 240 Query: 242 ALLPDYIVKDNPNLVR--IMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 L + D L+R ++ ++ P ++ YP L+N+ K++ F+ Sbjct: 241 VLRSHW---DVAPLLRDGLLVPLLAPWRQDANIWAVYPSRLENSAKVRVAVEFL 291 >gi|85712372|ref|ZP_01043422.1| transcriptional regulator, LysR family protein [Idiomarina baltica OS145] gi|85693815|gb|EAQ31763.1| transcriptional regulator, LysR family protein [Idiomarina baltica OS145] Length = 300 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 8/274 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F A S SF AA +L +S +++R + LE G LF+R+ R + +T G K Sbjct: 6 EMLRIFCTAAESRSFKEAANRLGISPQAVTRAVKELERLQGELLFHRNTRHIQVTLVGEK 65 Query: 66 LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + E + E Q + S + G++RIA + G L L E ++P + I Sbjct: 66 FAVIAKERLRAVDELFQTSVPNSGNELQGRVRIAAPVGFGHKCLMPALLELSTIHPQLDI 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D IR+ ++ S I R+L I+M+ A+P + P SI+ Sbjct: 126 DLTLSDERVDVVDEKIDIGIRI-GFMRDSRFIARQLTKINMYVVASPDLINRVGRPASIE 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L+ +L G + + + W+ ++DR P I+ + + + G G A + Sbjct: 185 DLN--HLPVTGLVDRNTGKLWPWVFSMDRQ-WTPSITRFRSADAEAELMGVQNGLGFAQI 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 PD+ +D LVR++E++ + +Y P+ Sbjct: 242 PDFSGQDLLRQEKLVRVLEEIEPVPWDLYIYRPQ 275 >gi|254786262|ref|YP_003073691.1| HTH-type transcriptional regulator YcjZ [Teredinibacter turnerae T7901] gi|237686911|gb|ACR14175.1| putative HTH-type transcriptional regulator YcjZ [Teredinibacter turnerae T7901] Length = 307 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 130/279 (46%), Gaps = 10/279 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D L +F VVA SFT AA QL LSQS++S + LE VGIKL R +R ++ T Sbjct: 8 MREDLSDLALFMVVAELQSFTRAATQLELSQSAVSHGVRRLEASVGIKLLNRTSRRVSTT 67 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G KL + EL+ P G +RI+T+ + LL L + YP Sbjct: 68 DAGEKLLAALRPGLGMINARIEELRLLGDAPRGLVRISTSKPALRTLLWPKLSAVVRDYP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQI+L L+++ D++ + D +RL++ + + I + A AAPHY + P Sbjct: 128 EIQIELNLESRLTDLAENRFDAGVRLKEFVSPDMIAVPIGPPIRLAAVAAPHYFQQHGTP 187 Query: 181 LSIQELDKHNLIT--FGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVL 237 +L++H+ + F P +F V + I P I S ++I + Sbjct: 188 EHPDDLEQHDCLALRFHAQAPVYDWEFEKAGQVLVKKITGPFIFS---ESGIAI-EAAKA 243 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G GIA + + V D N +L R++ D P CY Sbjct: 244 GHGIAFVTEPEVIDGIENGSLRRVLADWCPPFDGYVLCY 282 >gi|170682485|ref|YP_001745791.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5] gi|300936732|ref|ZP_07151630.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|170520203|gb|ACB18381.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5] gi|300458147|gb|EFK21640.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] Length = 323 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + + A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|320638552|gb|EFX08260.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. G5101] gi|320644013|gb|EFX13093.1| LysR substrate binding domain protein [Escherichia coli O157:H- str. 493-89] gi|320649295|gb|EFX17846.1| LysR substrate binding domain protein [Escherichia coli O157:H- str. H 2687] gi|320657004|gb|EFX24839.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662435|gb|EFX29824.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str. USDA 5905] gi|320665361|gb|EFX32448.1| LysR substrate binding domain protein [Escherichia coli O157:H7 str. LSU-61] Length = 294 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ T+ + L+ L PSG +RI + L L F YPDI+ Sbjct: 66 EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239 +L H I F D + W L D+ I +P +SY+ + LG Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHQPEGQWAFSDSYME-AEAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G+A +P +V D+ L+R+++ ++ YP Sbjct: 240 GLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277 >gi|290511378|ref|ZP_06550747.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289776371|gb|EFD84370.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 303 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V GSFT AA +L LS + + I+ LE+++ +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ + P+G LR++ G +++ FL +P + Sbjct: 62 GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIR+ + I L+ R L M AAP YL P + Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L H C+ W A ++ + R + L+ N ++ Q Sbjct: 181 PEDLADH----------LCLSHTVWTARNEWRLPGMEGEVRWKRDAILRCNDGYALRQAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G+G+ + P+ ++ D + +LVR++E V+ + + + KL F Sbjct: 231 IAGAGLLMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284 >gi|107101981|ref|ZP_01365899.1| hypothetical protein PaerPA_01003028 [Pseudomonas aeruginosa PACS2] Length = 303 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L+ F + G+F AA+ L L ++S+++ I LE +G++L R R ++LT G Sbjct: 4 FQALQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + P G+LR+ LG+ + L EF YP++++ Sbjct: 64 AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL +++ +D+ + ADC +R+ + + SSL+ R L + A+ YL+ P + Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H + + P F++ +VD R P S + VN+ + + C G G+ Sbjct: 183 ELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + +L +++ + + PS ++ YP + + +++ F +++ Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290 >gi|154247265|ref|YP_001418223.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161350|gb|ABS68566.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 302 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 11/276 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F VA SFT AA +L SQS++S I LE VG++L R R + T+ G Sbjct: 5 DLADLNAFLAVAEERSFTRAAARLGTSQSALSHTIRRLEARVGVRLLTRTTRNVAPTQAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + L E +P+G +RI T + ++ L+ L +PDI Sbjct: 65 ERLLGTLRPALESIGSELTALAELRSRPAGTIRITTAEHAARTVIWPALERLLPDHPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +D+ DI D +RL + + + R + M AP Y P + Sbjct: 125 VELSIDSSFTDIVAGRFDAGVRLGEALAKDMVAVRIGPDLRMAVVGAPAYFAAHPIPRTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 Q+L +HN I L + + W ++R E R+ L ++ I++ G G Sbjct: 185 QDLAEHNCINLRLLSSGAL--YAW--ELERDGREIRVRVEGQLAFDNIAMIVRAATAGFG 240 Query: 241 IA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCY 273 + ++ D + + + LVR++ED P+F Y Y Sbjct: 241 LGFVMEDQVAAEIADGRLVRVLED-WCPAFAGYHLY 275 >gi|261867371|ref|YP_003255293.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412703|gb|ACX82074.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 297 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 11/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++LR F A+ GSFT AA +L++S S++S I LE ++ IKLF R R + TE G + Sbjct: 6 NELRTFITAAQEGSFTKAAAKLNVSTSALSHSIRKLEEQLNIKLFNRTTRSIATTEAGEQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++ +E L GKLRI + ++L L F YP+++++ Sbjct: 66 LFQNLLPLFESIEDNLNALSTFRNTLKGKLRINGNDHVFLSILWDKLMAFAEQYPEMELE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L D K +DI D IRL + + R + M P Y P +++ Sbjct: 126 LTSDTKFVDIVAGRFDAGIRLGSDVAQDMIAVRLSDKMQMAVVGTPEYFAKKATPKKVED 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240 L +H + +P W A P+ + P+ NS+L I + ++G G Sbjct: 186 LGEHECLLVR--LPTSDSIMTWEFQPAKKSAPVVKFHPKGQLCFNNSHL-ISRAVLVGKG 242 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +A LP ++ D+ LV ++ +V + YP +N+ KA Sbjct: 243 LAWLPIDTMQPYLDSGELVEVLSNVAISYDGYHLYYPNRRQNSPLFKAL 291 >gi|257487513|ref|ZP_05641554.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330891603|gb|EGH24264.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|330988776|gb|EGH86879.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008741|gb|EGH88797.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+VF V SGS + AAE++ + S +SR +S LE ++ L R R + LT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++E+ + L S P+G+LRI + + ++ EF YP Sbjct: 61 EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++L D+ ID+ D AIR+ + S+L R L + ++ A+P YL+ P Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRI-GVLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + ++L +H L+ F + E N W A DR +P IS S +++ V Sbjct: 180 KTAEDLAQHVLVGFTHV-----ESLNQWPLRHAEGDRLSIKPAISA----SSGDTLRHLV 230 Query: 237 L-GSGIALLPDYIVKDN 252 L G GIA L D++ D+ Sbjct: 231 LEGVGIACLSDFMTNDD 247 >gi|59802027|ref|YP_208739.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA 1090] gi|194099598|ref|YP_002002729.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae NCCP11945] gi|239999798|ref|ZP_04719722.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|240014954|ref|ZP_04721867.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae DGI18] gi|240017402|ref|ZP_04723942.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae FA6140] gi|240081544|ref|ZP_04726087.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae FA19] gi|240113823|ref|ZP_04728313.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae MS11] gi|240116557|ref|ZP_04730619.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae PID18] gi|240118781|ref|ZP_04732843.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae PID1] gi|240122023|ref|ZP_04734985.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae PID24-1] gi|240124321|ref|ZP_04737277.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae PID332] gi|240126532|ref|ZP_04739418.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|240128994|ref|ZP_04741655.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|254494580|ref|ZP_05107751.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae 1291] gi|260439682|ref|ZP_05793498.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|268595608|ref|ZP_06129775.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268597640|ref|ZP_06131807.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268599891|ref|ZP_06134058.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268602226|ref|ZP_06136393.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268604492|ref|ZP_06138659.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268682947|ref|ZP_06149809.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268685112|ref|ZP_06151974.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268687374|ref|ZP_06154236.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291042924|ref|ZP_06568665.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293398068|ref|ZP_06642273.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae F62] gi|59718922|gb|AAW90327.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae FA 1090] gi|193934888|gb|ACF30712.1| putative LysR-family transcriptional regulator [Neisseria gonorrhoeae NCCP11945] gi|226513620|gb|EEH62965.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae 1291] gi|268548997|gb|EEZ44415.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268551428|gb|EEZ46447.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268584022|gb|EEZ48698.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586357|gb|EEZ51033.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588623|gb|EEZ53299.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268623231|gb|EEZ55631.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268625396|gb|EEZ57796.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268627658|gb|EEZ60058.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291013358|gb|EFE05324.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291611331|gb|EFF40401.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae F62] gi|317165087|gb|ADV08628.1| LysR family transcriptional regulator [Neisseria gonorrhoeae TCDC-NG08107] Length = 303 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL + ++R L+LTE G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHHNSRNLSLTEAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|237654239|ref|YP_002890553.1| LysR family transcriptional regulator [Thauera sp. MZ1T] gi|237625486|gb|ACR02176.1| transcriptional regulator, LysR family [Thauera sp. MZ1T] Length = 300 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 19/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + GSF+ AAEQL L ++S ++ I LE +G++L R R +T T G+ + Sbjct: 7 MRLFTRIVELGSFSRAAEQLGLPRASATQIIQQLEARLGVRLLARTTRQVTPTVDGAGYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + L+ + E +++ P G++RI + LL L +F YP ++I++ Sbjct: 67 RRCLRILADLDDAEAEFSQAAHHPQGRIRIDLPDSFCRLLLIPALPDFYTRYPLVRIEIS 126 Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++ ID+ + DC +R+ + P+ + L + + VT Y A H L P + Sbjct: 127 VGDRQIDLIREGVDCVLRIGELGDVPLHARRLGRLRQVTCASAGYLAQHPL-----PQGL 181 Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++L+ H ++ + +F ++ R + S L VN+ + + C G G Sbjct: 182 EDLEAHWMVDYVSASTAKSLPLEFEVEGRIELRSLR----SRLAVNNGGAYVAACAAGFG 237 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +PDY V+ + V I+ P V+ YP + +++ F +++ Sbjct: 238 IVQVPDYHVREPLEQGRFVEILPAFPPPVLPVHALYPADRPLSARVRVFIDWL 290 >gi|120553080|ref|YP_957431.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120322929|gb|ABM17244.1| transcriptional regulator [Marinobacter aquaeolei VT8] Length = 302 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 1/196 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F +V GSFT AA++L S +S+ +S LET +G++L R R L LTE G + Sbjct: 5 EAMRTFVMVVNEGSFTRAADRLDTSPQLVSKYVSQLETHLGVRLLNRTTRRLHLTEAGRQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V ++ + +L + + G LRI+ + + L EF ++P + I Sbjct: 65 YYPRAQQVLSDIDDLENQLGDLQTEAQGLLRISAPVSFAIRHMPALLTEFQRMHPAVGID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +DI + D A+R+ + +QSSSLI +++ + + A+P YL P ++ Sbjct: 125 LQLNDRKVDIVEEGFDIALRIGR-LQSSSLIAKRVAPVRLVLCASPAYLARYGTPGKPED 183 Query: 186 LDKHNLITFGDLIPKC 201 L H + + + P Sbjct: 184 LRDHQYLRYSYMDPDS 199 >gi|312602822|ref|YP_004022667.1| LysR family transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312170136|emb|CBW77148.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica HKI 454] Length = 404 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V S SF+ AA+ L + ++S++ I LE +G++L R R L LT G+ + Sbjct: 75 MQVFTRVVESNSFSRAADTLDMPRASVTTIIQNLEAFLGVRLLQRTTRRLNLTPDGAAYY 134 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + T+ E + P GKLR+ +G+ ++ L EF YP I++ + Sbjct: 135 ERCVRILADIAETEQLFHEGARNPRGKLRVDMPSSIGRLVVLPRLCEFHTRYPGIELMVG 194 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +K +D+ + D IR+ +Q S+L+ R++ A+P YLK EP +++EL+ Sbjct: 195 LGDKPVDLIQEGIDAVIRVGT-LQDSTLVARRVGVFQGVTCASPEYLKRHGEPRTLEELE 253 Query: 188 KHNLITF 194 H + + Sbjct: 254 NHYAVNY 260 >gi|307729423|ref|YP_003906647.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583958|gb|ADN57356.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 305 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 13/293 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V G F AA+ L S ++++R ++ LE +G +L R +R L+LTE Sbjct: 2 DRLRAFEVFVTVVARGGFARAADVLGTSPANVTRYVNELEAHLGTRLLNRTSRTLSLTEG 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + + T+ + +SV+P G+LRI + G L F+ YP I Sbjct: 62 GETLYARCKSILDDVAETEGLVSSASVEPRGRLRINVPVSFGILHLAPLWPAFMQKYPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +DI + D AIR+ + S++ RKL T A+P YL P + Sbjct: 122 ELDVGLIDRVVDIVDEGYDIAIRISR-AGSTNHAARKLATSQNVLCASPAYLARYGAPAT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC-LQVNSYLSIMQYCVLGSG 240 +L H I + W R P ++ C + N+ + + G G Sbjct: 181 PADLLAHRCIGY----TYAATGDEWQINDRRGKVHPVKVDCQMHTNNGDTARAAALAGQG 236 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + P +++ + LVR++ D P + YP + +++ +F+ Sbjct: 237 VIWQPTFLIGGDLRAGTLVRVLPDYRLPEIDILALYPSRRHVSARVRVMIDFL 289 >gi|259909879|ref|YP_002650235.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96] gi|224965501|emb|CAX57033.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96] gi|283479963|emb|CAY75879.1| HTH-type transcriptional regulator ptxR [Erwinia pyrifoliae DSM 12163] Length = 302 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 11/257 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V + S+T AA+ L L++SS+S++IS LE +G KL R R + +TE G + Sbjct: 12 IFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVGMTYYHY 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + H++++ + +++ +PSG LR+ + G + L F+ + + L L Sbjct: 72 CYRILHEVKSADLFIRQFHEEPSGSLRVVAPVTFGCQCIVPVLNRFIASNIHVSVDLDLT 131 Query: 130 NKDIDISMDYADCAIRLRK--PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ++ D+ D AI + + P Q + R L+ I YAAP YL N S +L Sbjct: 132 DRPVNFEDDHIDLAIAITRNLPEQRN---YRPLMDITWGLYAAPDYLINRTAVTSPDDLA 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H I F P + + E R S + N+ ++++ V +GIA LP Y Sbjct: 189 RHECILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAKTGIAYLPSY 245 Query: 248 IVK---DNPNLVRIMED 261 I + DN LV+++ D Sbjct: 246 IAREAVDNGKLVQLLPD 262 >gi|283836387|ref|ZP_06356128.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] gi|291067760|gb|EFE05869.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] Length = 322 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 7/240 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR+G F AA +L LS S +S++I+ LE + ++LF+R++R + LT +G Sbjct: 21 EDLFVFITVARNGGFARAALELGLSPSYVSKRIAILEKCLNVRLFFRNSRVMRLTPEGEN 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +++ L +G + I + GQ + L F+L YPDI ++ Sbjct: 81 ALEGAMQVVSEMDGFVSRLDNQRGALTGNITINCSFGFGQKYVAEALSAFMLAYPDITVK 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D IR+ I + I R+L T A+P YL P S+ Sbjct: 141 LTLTDREVDLVEEGVDVEIRVGDDI-NELYIARQLATNRRILCASPEYLARHGTPESVSA 199 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 L +H+ + +I + F NWL T R R++ NS ++ + + G GI L Sbjct: 200 LVQHDCL----MIQEKNSAFGNWLLTDGRQQTHCRLNRFHSSNSGSVVLIWALKGHGITL 255 >gi|221210925|ref|ZP_03583905.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221169881|gb|EEE02348.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 303 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 128/294 (43%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F R SFT AA +LHL+QS+ISRQI LE +G LF R R L LT G + Sbjct: 12 LVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQ 125 ++V+H L T E +KP G L + G L L L EF YP+I+++ Sbjct: 71 --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPEFRAAYPNIKLR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI+ + +S D + + + R+L + AP YL L + Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L L+ D + M W +DR +P+ + +NSY I+Q +LG G++L Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFEQNDIDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 243 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 Y++ + LVR+ + + Y P + F ++F +A Sbjct: 244 GWRYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297 >gi|170735582|ref|YP_001776842.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169817770|gb|ACA92352.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 315 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + +PD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPTLTRYHAQFPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P Q+L Sbjct: 126 SLSQRMPDLFDGTSDTAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPARQQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L W+ ++ P G +I +Q N+ S+ G GI + Sbjct: 186 AAHACLT---LCTPAFPTHEWV--LEGPEGVEQIHVAGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + +LVR++ I VY YP R F+ K R W Sbjct: 241 LPLYSAIDALRDGSLVRVLPAHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|254235529|ref|ZP_04928852.1| hypothetical protein PACG_01450 [Pseudomonas aeruginosa C3719] gi|126167460|gb|EAZ52971.1| hypothetical protein PACG_01450 [Pseudomonas aeruginosa C3719] Length = 303 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 141/290 (48%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F + G+F AA+ L L ++S+++ I LE +G++L R R ++LT G Sbjct: 4 FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + P G+LR+ LG+ + L EF YP++++ Sbjct: 64 AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL +++ +D+ + ADC +R+ + + SSL+ R L + A+ YL+ P + Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL +H + + P F++ +VD R P S + VN+ + + C G G+ Sbjct: 183 ELGEHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + +L +++ + + PS ++ YP + + +++ F +++ Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290 >gi|134278662|ref|ZP_01765376.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|134250446|gb|EBA50526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] Length = 313 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 126/296 (42%), Gaps = 25/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATVAAFASLGRTLRQLS----APDTPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID +S D D AIR P +L L + A AAP YL R P Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYLD--RHPPRAT 185 Query: 185 ELDKHNLITFGDL-----IPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +++ D P+ +E WL A V G PR + N + V G Sbjct: 186 AKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGP--EFNLASLAIAAAVAG 243 Query: 239 SGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ + +V D R++ V P+ C A ++KAF ++ Sbjct: 244 QGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAIC---ARPEDARVKAFVGWL 296 >gi|120610766|ref|YP_970444.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589230|gb|ABM32670.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 342 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V R SF AA +L S + +S++I LE E+ +KL +R R + +TE+G + Sbjct: 45 DDLRVFTAVVRKASFAGAAAELGASPAYVSKRIRLLEEELAVKLLHRTTRRVAVTEEGER 104 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + E+ + +P G LR++ + G+ ++ + + +P +Q++ Sbjct: 105 VFHWAQRILDDWDQLLQEVAVTRREPRGLLRVSCSFGFGRRIVAPAVSRLVERHPGLQVR 164 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D++ + D IR+ I + LI R+L H AAP YL P ++ + Sbjct: 165 LEVFDRLVDVAGEGFDLDIRVGDEI-APHLIARRLAGNHRVLCAAPGYLARKGTPRAVDD 223 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------------SCLQVNSYLSIMQ 233 L H+ + + D P G R+ L N +Q Sbjct: 224 LAGHDCLVIKER--------------DHPFGVWRLRSGAADRTVKVRGSLSANHGEMAVQ 269 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V G GI L + V + LVR++ + + V+ YP L+ + K++ F+ Sbjct: 270 WAVDGRGIVLRSLWDVGPDLATGRLVRVLPEWQQEA-NVWAVYPTRLERSAKVRVCVEFL 328 >gi|327189522|gb|EGE56677.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 317 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 12/301 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA QL S +++SR+I LE + +KLF R+ RG LT Sbjct: 7 FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ + + E + +L + S+ G +R++ L F +P + Sbjct: 67 GTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLHRFAARHPHL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + + +S AD ++ L +P + KL H+ Y + YL Sbjct: 127 ALELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAEKLTDYHLQIYGSRDYLAKAPAITC 185 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 +L +H +++ ++I ++L+ V PRI Q +S + + G G Sbjct: 186 RDDLLEHPFVSYIEEMI--FAPGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298 + +LP + P LVR++ I + LK +++A +F+ ++ D + Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRQYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298 Query: 299 F 299 F Sbjct: 299 F 299 >gi|156934372|ref|YP_001438288.1| hypothetical protein ESA_02203 [Cronobacter sakazakii ATCC BAA-894] gi|156532626|gb|ABU77452.1| hypothetical protein ESA_02203 [Cronobacter sakazakii ATCC BAA-894] Length = 311 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 136/288 (47%), Gaps = 5/288 (1%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 D LR+F VA +GSF + + L++S+ + ++ LE + +LF R R L+LT Sbjct: 15 GLDIHTLRIFVAVAEAGSFVAGGKAMGLTRSAAGKALARLEAYLETRLFQRTTRSLSLTA 74 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G + ++ L + ++++ G LR+ + G+ ++ ++EFL PD Sbjct: 75 EGHAFYHRCCQILEDLADAESSIRQNPRLAKGILRLTVSEGYGKMIVLPFIREFLHRSPD 134 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I++ ++ +D+ + D A+R+ + S I + + A+P YL+ P Sbjct: 135 VSIEVSFSDRVVDLVEEGFDLALRVGSGVTSYQYITQVIDRTTPQLIASPDYLQEWGMPT 194 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 S+ EL H + +G + +N + T + + ++ +S +I ++G GI Sbjct: 195 SLAELKNHRRLVYG--LGAATTAWNLIDTRQGQLALNGRNYVRFDSGDAIRTAALMGLGI 252 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP ++V+++ L+ ++ + + ++ YP +++AF Sbjct: 253 GFLPSFMVQNDIQQGRLIHVLPEAQGENVAIHAIYPNRRHLPVRVRAF 300 >gi|167572573|ref|ZP_02365447.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 336 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRGQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTHEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|91779559|ref|YP_554767.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692219|gb|ABE35417.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 312 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 133/282 (47%), Gaps = 11/282 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS D + F V +GSF AAE+++L++S++ + I LE +G++L R R +LT Sbjct: 1 MSDILDGVTTFVRVVETGSFALAAERMNLTRSAVGKVIVRLEKRLGVRLLNRTTRSQSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + +LE + +L +P G+LR++ G + + L +P Sbjct: 61 EDGQVYYDRCVRALAELEAAEADLDSGRREPKGRLRVSVPQAFGHHCVAPVLLGLARKHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I + + ++ +D+ + D +R+ S SL RKL H AAP YL P Sbjct: 121 QLKIDISITDRFVDVVEEGFDFVVRVGPLADSVSLAARKLGVQHASIGAAPAYLARHGTP 180 Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 S+ EL H +I + G P + D + + R +P+ L + I+ + Sbjct: 181 RSVDELRGHAVIAYLRAGSAQPWDVVDVD--GQIRRAQVQPQ---LGFDDMQGIVDAALA 235 Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEA 276 G G+A LP +++ LV +ME+ PS ++ +P++ Sbjct: 236 GFGLAWLPSWLLARYAQTGELVTVMENCFRPSQEIHLVWPKS 277 >gi|317406560|gb|EFV86754.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 302 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 17/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L F SG F AA +L +S++S++++ LET +G++L +R +R TLT Sbjct: 1 MMLNLNDLHFFAQAVDSGGFAAAARRLGCPKSTVSKRVATLETALGVQLLHRTSRSFTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G ++ V + + ++ + +PSG +RI ++ + Q L L YP Sbjct: 61 DVGRDVYDHARAVMIEAQAAEMVVHRRLAEPSGTVRITASVPVAQFQLADRLPVLARRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 ++IQL + ++ +D+ + D AIR + S L+QR++ + AAP Y+ Sbjct: 121 KLRIQLHVTDRFVDLVQEGFDIAIRSHFAALPDSDLVQRRMAEEPITLVAAPSYVAERGA 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGE--PRISCLQVNSYLSIMQYCV 236 P + Q L H+ + G M +W L I E PR L + ++MQ Sbjct: 181 PQAPQALGDHDGLMAG------MATKSWRLGDASGHIVEVAPR-PRLHADESTALMQAAQ 233 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI LP I L+R++ T P G+L A R I Sbjct: 234 AGLGIVCLPRTISAQAVSEGTLMRVLPAWTAGRVTTTILTPH---KRGQLPAVRAVI 287 >gi|299770610|ref|YP_003732636.1| transcriptional regulator [Acinetobacter sp. DR1] gi|298700698|gb|ADI91263.1| transcriptional regulator [Acinetobacter sp. DR1] Length = 313 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + E+ ++ KP G+LR+ + G + + + EF YP++ ++ Sbjct: 73 ESCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YL+ P S ++L Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P D++ L L ++ ++ G+ALLP + Sbjct: 193 NHACLRLVN--PSITPDWHLLNAKGESYQIDTGGQLIADNPELLLDVVQQDMGVALLPMF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 D N L I+ + +P VY P R+FI K R W Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|293393826|ref|ZP_06638133.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291423653|gb|EFE96875.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 305 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 124/278 (44%), Gaps = 6/278 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L F VAR GSFT AA QL ++Q ++S+ ISGLE + I+L R R ++ T Sbjct: 1 MKRNLNDLLYFVTVAREGSFTRAAAQLGVTQPALSQAISGLEERMQIRLLTRTTRSVSPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + ++ET L E KP+G +RI D+ + L L L YP Sbjct: 61 AAGERLLQAIGHRIDEIETELDMLTELRDKPAGTVRITCGPDVLRTTLLPKLTPLLHQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI ++ ++ DI D D +RL I + + M A A+P Y P Sbjct: 121 DIHVEFDANHGFRDIVADRFDAGVRLGDTIDKDMIAIPIGPKLRMAAVASPDYFSRYPLP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + QEL +H I + + + W D R+S L N+ I+ + G Sbjct: 181 QTPQELTRHQCIN--QRMVRSGGLYVWDFDQDGGDLNVRVSGQLTFNTSEHIVDAALAGL 238 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA LP+ + L+R++E P Y YP Sbjct: 239 GIAFLPEEEFGTHIADGRLIRVLEPWCRPFPGYYLYYP 276 >gi|254501531|ref|ZP_05113682.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222437602|gb|EEE44281.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 297 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 25/293 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA SGSF+ A L L+++ +S ++ LE G+ LF+R R L +TE G++L Sbjct: 11 LMVFAQVADSGSFSAAGRHLGLTRAVVSYHVNKLEDAYGLSLFHRAPRSLKITEAGAQLL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + Q ++ +P G LRI+ + +G N + L +F LYP I++ + Sbjct: 71 GHCRVIMDETVAAQRAIERYKQEPEGVLRISCPVSVGLNHVVPVLGDFHRLYPKIKLNVS 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +DI + D AIR P+ S L +L TI AAP+Y + P +I +L Sbjct: 131 FSDTVVDILEEGFDLAIR-GAPLPDSDLKATRLATISTCLCAAPNYFQTRSRPKTIDDLR 189 Query: 188 KHNLITFGD------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H + + L+P + V P G + N+ ++ + G GI Sbjct: 190 DHQWVLHMNKQKVEILLP------GGASKVFEPEGS-----ITTNNAVARTAFVEAGHGI 238 Query: 242 ALLPDYIVKDNPNL-VRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNF 289 +P Y +P + ++E+V+ P +Y +P + L+ +F Sbjct: 239 GRIPRY--DADPKIRAGLLEEVLPGTRLPEIAIYGVFPPGAAMSSNLRLLLDF 289 >gi|237747105|ref|ZP_04577585.1| transcription regulator protein [Oxalobacter formigenes HOxBLS] gi|229378456|gb|EEO28547.1| transcription regulator protein [Oxalobacter formigenes HOxBLS] Length = 303 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 8/275 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F A GS A+ L ++ + R+I LE +GIKL +R R LTLTE+G+ Sbjct: 6 QIEAFVNAAEKGSLAKASLVLGITPVMLGRRIDALERRLGIKLMHRTTRHLTLTERGTVF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +L+ + + E K +G L ++ G+ + + FL PD++I Sbjct: 66 LDHCRKILDELDQAEKMIGEGLNKATGHLIVSAPAAFGRKHVAPHAPAFLAANPDVKISF 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D +IR+ I SL+ KL + H A+P YLK P +++EL Sbjct: 126 NLSDQVVDLVREGYDLSIRIGGTI-DPSLVAIKLCSNHRVVCASPDYLKKFGVPRTLKEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 ++HN +TF + + W +R + L N + +C+ G G+A Sbjct: 185 NQHNCLTFN---LQGGQQRGWHFKENNRTVIVRTSGNLDCNDGELLHHWCLEGYGLAWRS 241 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEAL 277 + ++ + LV ++++ P++ + YP+ L Sbjct: 242 TWEIQSELASGKLVTVLDEFALPNYDIMAVYPQQL 276 >gi|254505863|ref|ZP_05118008.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16] gi|219551086|gb|EED28066.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16] Length = 295 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 17/295 (5%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +++ + S+IS+++ LE +G++L R R +T TE Sbjct: 1 MDWIQSVHSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + + ++ E + S P+G L+I T+ +G L L +FL +YPD Sbjct: 61 AGALFYERAKMQLEEWQSIVDETRSVSQSPAGLLKIGATLAVGSKFLVQYLNDFLRMYPD 120 Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I+IQLI ++S+D R + + S S L YA+P Y++ E Sbjct: 121 IRIQLITTTPGQLPELSLDL--FISRELEQLNSLSFKATPLFEHKAGFYASPSYIETHGE 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P +I+EL HN + +G+ + + L R + +S + M Y S Sbjct: 179 PKTIEELTSHNALIWGERPQREIT----LTQGKRIM----LSGNFATTNPEAMFYAAKNS 230 Query: 240 -GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + D ++KD N L RI+ ++ TVY YP+ + K F +++ Sbjct: 231 MGILVTNDVMIKDDLNNGTLRRILPNITADEATVYAYYPKLDYQHTRTKLFLDYL 285 >gi|170698271|ref|ZP_02889348.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170136852|gb|EDT05103.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 310 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 11/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V G+F A+E + ++ +SR I+ LE ++ I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE S+ GKLR+ + + +L L F+ +P+++I+LI Sbjct: 74 VMPHLAGLEEAAAAAAGSASTVRGKLRVNLDPVVYRTILGPQLDAFMDAHPELEIELIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187 + D+ MD D A+R +P ++S+LI RKL+ + A+P Y+ P ++L Sbjct: 134 DSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPSYVARQGRPTKPEDLASR 192 Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H I F + P+ + F W R + + R L VN +++ C+ GSGIA Sbjct: 193 SHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LL + + L+ + + F +Y YP K +AF +F+ Sbjct: 250 LLGAEPLIASGQLIDLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFV 297 >gi|332185086|ref|ZP_08386835.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] gi|332014810|gb|EGI56866.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] Length = 290 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 14/253 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V ++GS A LS + +S++I+ LE +G++L +R R LT+TE G+ H Sbjct: 7 LFVDVVQAGSLAGGARTWRLSPAMVSKRIARLEARLGVRLLHRTTRRLTMTEAGAAFHGE 66 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + L + + + P+G LR+ G+ + L FL YP I++ L L Sbjct: 67 VAPLVAGLRAAEARVSHIAAGPTGPLRVTAPTSFGRLWVAPYLPGFLARYPAIRLSLDLT 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D AIR+ S L + A+P YL P I L H Sbjct: 127 DDFVDVMGERVDLAIRITA-APPSGLAVHRFADNRRVLCASPSYLAQAGTPTGIAALADH 185 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 L+ +P W T G+ S ++ NS + + + G+GIAL + V Sbjct: 186 RLLAANGQLP-------WRLTGATVTGD---SLIETNSSEVVREMALAGAGIALRSLWDV 235 Query: 250 KD---NPNLVRIM 259 D + LVR++ Sbjct: 236 ADALADGRLVRVL 248 >gi|328725366|ref|XP_003248445.1| PREDICTED: uncharacterized HTH-type transcriptional regulator yafC-like, partial [Acyrthosiphon pisum] Length = 253 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 17/251 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++LR + V +GS T AAEQL + S ISR +S LE+++ L +R R L LTE+G Sbjct: 7 EELRAWVAVVDTGSITAAAEQLDQTSSGISRALSRLESKLQTTLMHRTTRRLALTEEGLI 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +E + ++ + PSG+LRI +++ + EF YP IQ++ Sbjct: 67 FLDHARQILSSVERAEEQIAQRRDIPSGRLRINANAPFMLHVIVPLVAEFRQRYPLIQLE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L D+ ID+ D AIR+ + ++ S+L R L + A+P YL+ P S++ Sbjct: 127 LNTDDIMIDLLEQQTDIAIRVGE-LRDSTLRARVLGSSATRLVASPAYLQQYGSPESVEA 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L H L+ F L + W P+ + LQ+ LS + Q + G Sbjct: 186 LSAHQLLGFSQLDAHNV----W------PVWQREGEFLQIKPTLSASSGETLRQLALAGQ 235 Query: 240 GIALLPDYIVK 250 GIA L D++ + Sbjct: 236 GIARLSDFVSR 246 >gi|330504297|ref|YP_004381166.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918583|gb|AEB59414.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 299 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 10/286 (3%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF V GS T AAE L +S++ +SR ++ LE+ G++L +R R L+LT G ++ Sbjct: 8 RVFVEVLERGSQTAAAEALDMSRAMVSRYLAELESWAGVRLLHRSTRRLSLTAAGEQMLP 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 E+ E Q Q P G LRI + Q L L+ F YP + + L++ Sbjct: 68 QCREMLALAERMQALGQSVDDTPRGTLRITCSQSFAQAWLVHVLRAFTERYPQVSVDLLV 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +++ D A+R+ + +LI R+L A+P YL P ++L + Sbjct: 128 GSEAVNLVEARIDLALRITNQL-DPNLIARRLAVCRSVVCASPDYLARHGAPQRPEDLTR 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP--- 245 HN + + + + +F V I L N + +++ + G+GI+L P Sbjct: 187 HNCLAYA-YFGRSLWEFEHQGEV---IAVSVSGSLSANESMVLLEATLAGAGISLQPLYS 242 Query: 246 -DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D +V++ LV ++ D P ++ Y + ++ +FI Sbjct: 243 VDALVREG-RLVHLLADYQPPQLGIHALYGTRRQMLPAMRLLLDFI 287 >gi|317406694|gb|EFV86857.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 302 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 41/303 (13%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF V R+ SF+ AAE L +S + ++++I LE +G LF+R R + ++E G +++ Sbjct: 10 LRVFNAVVRASSFSRAAEDLGMSAAYVTKRIRLLEASLGTPLFHRTTRRVVVSEAGERVY 69 Query: 68 ----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R+ +V H +E + +E P G LRI ++ G+ ++ L F+ +P +Q Sbjct: 70 HWAQRILDDVEHLVEEVGVTRRE----PRGLLRICSSFGFGRRVVAPALSAFVSRHPAVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ + ++ +D++ + D +R+ I + +I RKL H AAP YL P + Sbjct: 126 VRFEVFDRLVDVAAEGYDLDVRVGDDI-APHVIARKLAANHRLLCAAPSYLAERGAPRKL 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------------SCLQVNSYLSI 231 +L H+ + + D P G R+ L N+ + Sbjct: 185 DDLAAHDCLVIKER--------------DHPFGVWRMRRGEREHTVKVRGPLSANNGEMV 230 Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFR 287 +Q+ V G GI L + V P + + P + ++ YP L + K++ Sbjct: 231 VQWAVDGRGIILRSAWDV--GPLIAAGKLVPVLPQYRQEANIWAVYPARLNASAKVRVCV 288 Query: 288 NFI 290 +F+ Sbjct: 289 DFL 291 >gi|295700531|ref|YP_003608424.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439744|gb|ADG18913.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 305 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 15/292 (5%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 VA +G F AA++L ++ SS++R + LE +G L R R ++LT+ G+ S + Sbjct: 13 VADAGGFAKAAQRLGVATSSVTRLMDALEDSLGTALLTRTPRRVSLTDAGATYVEQISRL 72 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 +L + +S P G LR+ + +L +L FL YP + + +++ + + Sbjct: 73 LDELAEADESVLDSGAAPVGALRVTVPSTYNRIVLAPHLAAFLREYPRVALDVVVADHFV 132 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL-- 191 D+++D D A+R+ P +LI RK+ AA YLK P +L +H Sbjct: 133 DLALDRIDVAVRIGLPSGDPNLIVRKMADNPRFVVAAHEYLKKAGMPEEPADLAEHECLR 192 Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPDYIVK 250 I +G W T I + + +++ L ++ VL G ALLPD++V Sbjct: 193 IAYGG---SYRARQIWTFTRGEEIEKVNVRGRLISNSLDMLLQAVLAEQGFALLPDWLVN 249 Query: 251 ---DNPNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 D+ L+R D +TP V+ Y +++ K++A FL+AR Sbjct: 250 EHIDSGRLMRCFADWKVTPQSGDVVVHAAYLPNRRHSTKVRAL--LQFLEAR 299 >gi|254418113|ref|ZP_05031837.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] gi|196184290|gb|EDX79266.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3] Length = 300 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 140/293 (47%), Gaps = 20/293 (6%) Query: 6 DKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L AR+GS +T AA L +S S++S+ + LE +G+ LF R R LTLT + Sbjct: 8 DRLTGLIAFARAGSLGSYTAAARSLSISPSAVSKSVQRLEQRLGVSLFTRTTRSLTLTPE 67 Query: 63 GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +LH R + E Q+ + S +PSG LRIA ++ LG +++ L EF YP Sbjct: 68 GRELHGRALKLLQDAEEIEQVAMTARS-EPSGVLRIAASLPLGIHVIAPALPEFRRRYPK 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + L L ++ +DI D A+R+ + + S L+ R+L + + A+A+P YL + P+ Sbjct: 127 VTVDLRLSDQIVDIVDLGVDVAVRIGE-LADSRLLSRRLAPMRLGAFASPAYLASRGAPI 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCV 236 L +H+ + + F W IGE I S + V+ +++ V Sbjct: 186 HPDALAEHDTVNL--RYQSSGQVFRW----PFKIGEREIEIVPPSGIIVDVSEAVLATLV 239 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+ L ++ LV I+ + + +PE + ++AF Sbjct: 240 AGGGVGLSATFVAAPYVARGELVPILTEYAVERHNITALWPEGRRANPAVRAF 292 >gi|184157763|ref|YP_001846102.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332876450|ref|ZP_08444217.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|183209357|gb|ACC56755.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|322508074|gb|ADX03528.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323517655|gb|ADX92036.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735308|gb|EGJ66368.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 311 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + S L+ RKL+ I A P YL P + Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PSGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPHD 189 Query: 186 LDKHNLITFGD 196 L +H I G+ Sbjct: 190 LKQHECIYLGE 200 >gi|170733839|ref|YP_001765786.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254247460|ref|ZP_04940781.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124872236|gb|EAY63952.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|169817081|gb|ACA91664.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 300 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + V V +G+F A E + L+Q ++SR ++ LE VGI++F R AR + Sbjct: 1 MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ +S + G+LR+ G +L + EFL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +++ + ++ D+ D D A+R P + SS R L+ + A+ Y+ Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW 207 EP ++L D H + D P + W Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYEW 208 >gi|300716733|ref|YP_003741536.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299062569|emb|CAX59688.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 304 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 24/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G F+ AA+ L + +++S+ I LE +G+KL R R +++T G+ + Sbjct: 7 IRAFARVVETGGFSKAAQSLQMPNATLSKSIQALEKHLGVKLLERSTRRVSVTRDGTAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + +LE L S P G+LRI T + LL L +F YPDI++Q+ Sbjct: 67 ERTKHLLSELEDIDATLGRSQATPKGRLRIETGGAVASLLLIPALPDFCARYPDIELQVG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ D+ + D AIR+ +LI RK+ A+ YL+ P Q++ Sbjct: 127 VSDRTADVIGENIDGAIRISA--ADGALISRKIGAFGWTTCASKAYLQRYGVPEHPQQIL 184 Query: 188 KHNLITF-------GDLIPK--CMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 N G L+P C + + E +C + VN + + + Sbjct: 185 DGNFPVAGYFSSQTGILLPMKFCKQGESL---------EITPACKVMVNESNAHLATALA 235 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ D+++ + LV ++ED P +YF Y + + + K++ F +++ Sbjct: 236 GIGLIHTLDFMIHPSIKAGKLVPVLEDWRAPPVDIYFSYAPSRQLSTKVRVFADWV 291 >gi|237812011|ref|YP_002896462.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|237505854|gb|ACQ98172.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] Length = 333 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 37 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 96 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 97 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 156 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 157 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 215 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W RP + N + + G+GIAL Sbjct: 216 ADLCAHRCIVLGE-----QPRVEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 270 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 271 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 328 Query: 298 KF 299 ++ Sbjct: 329 RW 330 >gi|167902966|ref|ZP_02490171.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] Length = 301 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W RP + N + + G+GIAL Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296 Query: 298 KF 299 ++ Sbjct: 297 RW 298 >gi|332345484|gb|AEE58818.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL +P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|217974780|ref|YP_002359531.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217499915|gb|ACK48108.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 300 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 17/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAE L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 IRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + + G +RIAT I LGQ+ L + F+ ++P + IQL+ Sbjct: 67 QFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQLV 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI R+L+TI AAP YL + PL ++ + Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DDNLIARRLMTIDAVICAAPSYL-DSNTPL-VEPI 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 D L+ LI + NW + +++ L+ N ++ + G GI LP Sbjct: 183 D---LLAHNCLIHSAQQ--NWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + L ++ D TP T++ Y L + + R FI A+ W+ Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLWAVY---LSRSYQQNLVRAFIDFTAQQWQL 291 >gi|78061264|ref|YP_371172.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969149|gb|ABB10528.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 319 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 7/286 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +S +WD RVF V R+G+ AA L + Q+++ R+++ LE +G KLF + + G +T Sbjct: 27 LSMNWDDARVFLAVHRTGTLREAAAVLDVDQATVGRRLTALEKALGAKLFLKTSSGYVVT 86 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + + + + S + G++R+ TT L + + ++ P Sbjct: 87 QAGEHSLQAAEAMEQAASDFERRVHGSDDRLEGEVRVTTTDSLAMDFVVPAIRSLRRKCP 146 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + L + ++++ AD AIR P ++ L++RKL + +A+ YL EP Sbjct: 147 AIHVILTTSVQVLNLTRRDADLAIRTVMP-ENPDLVRRKLSEWEVGLFASREYLDAHGEP 205 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + H+L+ + I D +++R RI+ QV+S L + G G Sbjct: 206 AIGAAFEGHDLVVYQPAITSNQGDTLCGESMER----GRIAA-QVSSSLMLATAIRSGIG 260 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKA 285 I LP Y+ + + +LVRI D + + V+ L T +++A Sbjct: 261 IGELPVYMAQGDDSLVRIWPDKSRAAPYQVWLVSHTDLNRTARVRA 306 >gi|107023416|ref|YP_621743.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690498|ref|YP_836121.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105893605|gb|ABF76770.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116648587|gb|ABK09228.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 300 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%) Query: 1 MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M FD + V V +G+F A E + L+Q ++SR ++ LE VGI++F R AR + Sbjct: 1 MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + + +E ++ +S + G+LR+ G +L + EFL Sbjct: 61 TLTDEGRRFYEAVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +++ + ++ D+ D D A+R P + SS R L+ + A+ Y+ Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179 Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW 207 EP ++L D H + D P + W Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYEW 208 >gi|53717968|ref|YP_106954.1| LysR family regulatory protein [Burkholderia pseudomallei K96243] gi|126441320|ref|YP_001057397.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|167717745|ref|ZP_02400981.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167736776|ref|ZP_02409550.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167813878|ref|ZP_02445558.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167822396|ref|ZP_02453867.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167843983|ref|ZP_02469491.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167892487|ref|ZP_02479889.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167900986|ref|ZP_02488191.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167909202|ref|ZP_02496293.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167917237|ref|ZP_02504328.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|254182077|ref|ZP_04888674.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254188008|ref|ZP_04894520.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254196436|ref|ZP_04902860.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|52208382|emb|CAH34316.1| LysR family regulatory protein [Burkholderia pseudomallei K96243] gi|126220813|gb|ABN84319.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|157935688|gb|EDO91358.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|169653179|gb|EDS85872.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|184212615|gb|EDU09658.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 320 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + Sbjct: 6 SMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + +SV P G+LR+ + G + + + Y D+ +++ Sbjct: 66 YERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL P +I + Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIAD 185 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241 L H+ I L+ + + + V P + VN +L ++ VL G+GI Sbjct: 186 LQHHSFIRREPNETLLDAAISEVAAASRV------PMSGNVIVN-HLEGLRVAVLGGAGI 238 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 ALL +V ++ LV ++ D + P +Y Y + K+++F +F+ Sbjct: 239 ALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 291 >gi|295095811|emb|CBK84901.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 297 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SGSFT AA+ L++ +++S+ + LE + +L +R R + T +G + + Sbjct: 3 MRAFTRVVESGSFTRAADSLNMPIATLSKLVKSLEAHLETRLLHRTTRRVVTTAEGMEYY 62 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +E + S P G LRI +++L L +F YPD++I L Sbjct: 63 EKALRVLIDIEDIDTAFRASCCTPKGHLRIDVGGSTARDVLIPLLPDFFQRYPDLRINLG 122 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ +D+ DC IR P+ SSLI R + M A A P YLK P QEL Sbjct: 123 VADRPVDLISGNVDCVIR-GGPLDDSSLIARHIGDARMIACATPGYLKTHGIPAYPQELR 181 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC---LQVNSYLSIMQYCVLGSGIA 242 + H LI++ + F +L DR GEP IS L VN + + + G GI Sbjct: 182 NGHKLISYLSPVTGRAFPFRFL---DR--GEPLEISVPHHLGVNESNAHLAAALAGLGII 236 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y + + LV ++ D ++ + YP++ T +L+ F Sbjct: 237 QTFGYAARTHLETGALVEVLSDWRPKAYPFHVVYPQSRHLTHRLRVF 283 >gi|218768928|ref|YP_002343440.1| probable LysR-family transcriptional regulator [Neisseria meningitidis Z2491] gi|254805668|ref|YP_003083889.1| LysR-family transcriptional regulator [Neisseria meningitidis alpha14] gi|121052936|emb|CAM09290.1| probable LysR-family transcriptional regulator [Neisseria meningitidis Z2491] gi|254669210|emb|CBA08010.1| LysR-family transcriptional regulator [Neisseria meningitidis alpha14] gi|319411226|emb|CBY91633.1| putative HTH-type transcriptional regulator [Neisseria meningitidis WUE 2594] Length = 303 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LT G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|190892374|ref|YP_001978916.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190697653|gb|ACE91738.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 298 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 15/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F VA SFT AA +L ++QS++S + LE +G++L R R + TE G Sbjct: 5 NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L KP+G +RI + ++++ L L YPDI+ Sbjct: 65 ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +DN +I D D +RL + ++ + R + A+P Y K P + Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFKTRPVPTTP 184 Query: 184 QELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL +HN + G L E N V R G+ L N+ ++ + G Sbjct: 185 QELMQHNCVNRRLDRIGGLYAWEFEKNNEEVRV-RVEGQ-----LTFNTDREMVGAALQG 238 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 GIA +P+ V + L I++D TP F Y+ Y Sbjct: 239 YGIAFVPESYVATHLAEGRLTLILDD-WTPKFAGYYLY 275 >gi|237731835|ref|ZP_04562316.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907374|gb|EEH93292.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 313 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 139/285 (48%), Gaps = 13/285 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + IS++++ LE + + L +R R +T+TE+G + Sbjct: 16 NDLRVFMLVARRAGFAAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGER 75 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ EL ++ P G LRI ++ G+ ++ L YP ++++ Sbjct: 76 IYEWAQRILQDVDQMMDELSDARQIPQGMLRIISSFGFGRRVVAPALSALAKEYPQLELR 135 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 136 FDVEDRLVDMVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFVARHGVPKQLND 194 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L TF L+ K + + + G I L N + Q+C+ G GIA Sbjct: 195 LS-----TFPCLVIKERDHPFGIWQMRNKEGAHSIKVTGPLSSNHGEVVHQWCLDGQGIA 249 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 L + V DN +LV I+ + P+ ++ Y L + K++ Sbjct: 250 LRSWWDVCDNIASGHLVHILPEYYQPA-NIWAVYVSRLATSAKIR 293 >gi|170750153|ref|YP_001756413.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656675|gb|ACB25730.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 318 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 18/296 (6%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L ARS GS++ AA L +S S++S+ + LE +G+ LF R R LTLT + Sbjct: 7 DRLTGIVAFARSASLGSYSAAARSLGISPSAVSKSVQRLEARLGVSLFTRTTRSLTLTPE 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + E + + +P+G L++A +I +G +LL L F +P + Sbjct: 67 GRDLQERALRLLREAEAIEQAAVAARSEPAGTLKVAASIPVGVHLLGPALPRFRARHPKL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L ++ +D+ + D AIR+ + + S L+ R+L + A+AAP YL P Sbjct: 127 SVDLRLSDRFVDLIEEGIDVAIRVGE-LADSRLVSRRLAPHRLGAFAAPVYLARRGTPRH 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237 +L H+ + F + W V G RI + + + ++ V Sbjct: 186 PDDLAHHDCVNF--RFQSTGQALRWPFQV----GGRRIEFTPHAGIVADFSDAVAAVLVA 239 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI + P YI + LV +++D +PE+ + +KAF F+ Sbjct: 240 GGGIGISPTYIAAPHVARGALVPVLQDFAVDRSVFTALWPESRRGNPNVKAFLAFL 295 >gi|220919661|ref|YP_002494964.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] gi|219952081|gb|ACL62472.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 297 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 125/269 (46%), Gaps = 8/269 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA+ GSFT AA +L ++QS++S ++GLE +G++L R R ++ TE G +L R+ Sbjct: 12 FTTVAQEGSFTRAAARLGVTQSALSHAMNGLEARLGLQLLNRSTRSVSPTEAGERLLRIV 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E L E P+G +RI + +L L+ L YPDI ++++ + Sbjct: 72 GPQFEQIEVELSALTELRETPAGTVRITAPEHAAETVLWPALERLLPDYPDITVEVVTEQ 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I + D +R+ + ++ + R + + AP Y + +P ++L Sbjct: 132 SLTNIVAERFDAGVRIGEHVEKDMVAVRIGPPMRIAVVGAPAYFQGRPKPKQPEDLTAQR 191 Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDYI 248 I P + W R + R+ V + L +++ L G G+A LP+ Sbjct: 192 CINLRR--PTRGGFYPWEFGRAGRELAV-RVEGQLVFTSLHLIRNAALAGLGLAYLPEDQ 248 Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYP 274 V+ LVR++ED P + YP Sbjct: 249 VQAQVAEGRLVRVLEDWCEPFPGYHLYYP 277 >gi|304389125|ref|ZP_07371167.1| LysR family transcriptional regulator [Neisseria meningitidis ATCC 13091] gi|304336924|gb|EFM03116.1| LysR family transcriptional regulator [Neisseria meningitidis ATCC 13091] gi|325203410|gb|ADY98863.1| transcriptional regulator, LysR family [Neisseria meningitidis M01-240355] gi|325205375|gb|ADZ00828.1| transcriptional regulator, LysR family [Neisseria meningitidis M04-240196] Length = 303 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LT G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|289625166|ref|ZP_06458120.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651350|ref|ZP_06482693.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869162|gb|EGH03871.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+VF V SGS + AAE++ + S +SR +S LE ++ L R R + LT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++E+ + L S P+G+LRI + + ++ EF YP Sbjct: 61 EEGKFFLERARHIIEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++L D+ ID+ D AIR+ + S+L R L + ++ A+P YL+ P Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRI-GVLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + ++L +H L+ F + E N W A DR +P IS S +++ V Sbjct: 180 KTAEDLAQHVLVGFTHV-----ESLNQWPLRHAEGDRLSIKPAISA----SSGDTLRHLV 230 Query: 237 L-GSGIALLPDYIVKDN 252 L G GIA L D++ D+ Sbjct: 231 LEGVGIACLSDFMTNDD 247 >gi|307727578|ref|YP_003910791.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307588103|gb|ADN61500.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 297 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 142/296 (47%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF VA SF+ AE+L S S ++R +S LE +GI+LF R R + LT+ G+ Sbjct: 4 FRAMQVFTQVAECRSFSQTAERLSTSTSVVTRHVSCLEKHLGIRLFQRTTRKVVLTQAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGN--LKEFLLLYPD 121 + ++ +LE + + SG++RI + LG +LLQ ++ +P Sbjct: 64 EYADGCRDLLRQLEAVESRATTEQTELSGEIRI---VALGSFSLLQLTPLFADYQARFPR 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + + L + +D+ + I ++S +LI R+L++ A+PHYL P Sbjct: 121 VNLNVTLTERRVDLLEGGFEVGIVSEHMVRSETLILRRLISSFCIPVASPHYLALAGHPK 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 + +L +I+ +P W+ VDR + ++ + VNS + MQ + G Sbjct: 181 TPADLKTCRVIS----VPTDTAQQAWV-FVDREGKQESVTVQPSMTVNSVVMQMQLALNG 235 Query: 239 SGIALLPDYIVKD---NPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ALLP+ +V D LV +++ ++ V YP + K++AF N Sbjct: 236 MGVALLPNELVADALRARTLVHVLDAYSLLNADVAVSLVYPSRDFVSRKVRAFINL 291 >gi|317054433|ref|YP_004118458.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316952428|gb|ADU71902.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 302 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AA+ L + +++S+ + LE +GI+L R R +T+T +G + Sbjct: 7 IRAFARVVEAGNFTRAADSLDMPNATLSKLVQELEAHLGIRLLQRTTRRVTVTAEGRDYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE S + G LRI +++L L +FL YPDI+I L Sbjct: 67 EKALRIVRDLEDIDASFNVVSSRLRGHLRIDVGGSTARDVLIPALPDFLARYPDIRIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ +D+ D DC IR P+ SSLI R + M A P YLK P EL Sbjct: 127 VSDRAVDLISDNVDCVIR-GGPLSDSSLIARHIGDATMITCATPGYLKAFGVPAYPDELK 185 Query: 187 DKHNLITF 194 + H LI++ Sbjct: 186 NGHRLISY 193 >gi|54301752|ref|YP_131745.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46915172|emb|CAG21945.1| putative transcriptional regulator [Photobacterium profundum SS9] Length = 297 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 9/281 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S +WD +R+F VA GS + AA+ + +SQ ++SRQI LE G+ LF R GL LT Sbjct: 3 SMEWDSIRIFLAVAEQGSMSAAAQVVGMSQPTVSRQILALEERTGLHLFERSTSGLKLTP 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + E ++ SS++ SG +R+A + G + L L F ++P Sbjct: 63 VGCQLLESAKDTALGAERFSRQVNGSSIEESGNVRLAVSELFGFHFLPEALAAFHRVHPL 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++LI+ N ++++ AD +I +KP Q L+ L++ + +A Y+ + P Sbjct: 123 INVELIVSNDKVNLNKRDADISICQQKPEQ-PDLVVTYLMSRTLGFFAHKAYIDDVGYPE 181 Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ++ + H++I F + N R + + + + + +SY + + Sbjct: 182 TPDDIYRAPHSVIGFDN----SNMYINQAEKSGRNLTKKQFT-FRTDSYQMQLNLIQAQA 236 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKN 279 G+A+ + K L+ I +D+ P+ T + C+ + N Sbjct: 237 GVAVTITELAKKTAGLIEIFKDIPLPNITWWLVCHRDVQVN 277 >gi|126172855|ref|YP_001049004.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|304410739|ref|ZP_07392357.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307304834|ref|ZP_07584584.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|125996060|gb|ABN60135.1| transcriptional regulator, LysR family [Shewanella baltica OS155] gi|304351223|gb|EFM15623.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306912236|gb|EFN42660.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 300 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 17/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAE L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 IRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + + G +RIAT I LGQ+ L + F+ ++P + IQL+ Sbjct: 67 QFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQLV 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI R+L+TI AAP YL + PL ++ + Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMTIDAVICAAPSYL-DSNTPL-VEPI 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 D L+ LI + NW + +++ L+ N ++ + G GI LP Sbjct: 183 D---LLAHNCLIHSAQQ--NWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + L ++ D TP T++ Y L + + R FI A+ W+ Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLWAVY---LSRSYQQNLVRAFIDFTAQQWQL 291 >gi|330960836|gb|EGH61096.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 305 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 13/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF +A GSFT AE + + + ++R I LE + ++LF R R + LT +G + + Sbjct: 7 MQVFVKLAELGSFTKVAEAMQVGRPHLTRTIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 66 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 RV + ETT + + S G+LRI Q L+ F +PDI++ L Sbjct: 67 ERVKGNLADLAETTSMFDRNGSAL-RGRLRIDIPAAFSQRSFMETLRSFTQAFPDIKVVL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ + DCA+R+ + + SSL+ RK+ M AAP YL P ++ +L Sbjct: 126 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRKIGKATMVTCAAPSYLYAFGTPQTLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H ++F L W L D P P + VN + +Q + G GI Sbjct: 185 KRHCGVSF--LSGHNHRPLPWHFSLNGEDLPY--PARGGITVNESNAYVQCGLAGFGILQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P V+ + LV ++E V YP +++AF Sbjct: 241 APGITVESFLASGGLVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAF 286 >gi|323494072|ref|ZP_08099188.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311699|gb|EGA64847.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 295 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 17/270 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW++ R F VVA GSF+ A +++SQ ++ RQI+ E E+ + LF R + L LT Sbjct: 6 IQFDWNRARAFLVVAEEGSFSAAGRAMNISQPTLGRQIAAFEQELNVTLFERVGKKLVLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNL--LQGNLKEFLL 117 E GSKL++ S++ + +G + I+ T +D L L+E+ Sbjct: 66 ESGSKLYQHVSQMAESANQMLLTALGQDENIAGDVSISLTELDAFFRFPPLISQLREYA- 124 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 P+I I+LI+ N+ D+ AD AIR ++P LI RK+ +H Y +++ Sbjct: 125 --PNINIELIVSNQVSDLKRREADIAIRYQRPT-DLDLIARKIGHETVHLYGNKSLVQSF 181 Query: 178 REPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 S E+ +I F G+ + + +++ WL + P + C ++ L Q Sbjct: 182 SNK-SPSEVSNVQIIGFERGERLKQHLDESGWLLKHN-PFN---MIC---SNQLVQWQLA 233 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP 265 + L+PD+I + NPNL +D P Sbjct: 234 QHTPSLILVPDHIAQYNPNLTIAFKDHFKP 263 >gi|194366348|ref|YP_002028958.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349152|gb|ACF52275.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 301 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 127/290 (43%), Gaps = 8/290 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA GSF AAE L LS + + I LE +G++L R R +LT+ G Sbjct: 7 LRTFAKVAEVGSFAAAAEALDLSPQLVGKHIQALEQHLGVRLLNRTTRKQSLTDFGQAYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E + + + +P G+LRI+ + G + L + ++ YPD+Q+ L Sbjct: 67 ARARVILEEVEGAEQLAEVARGRPMGRLRISAPVTFGVHALGPAVVAYMQQYPDVQVDLN 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N +DI D D R + S L+ R+L + A+P YL + +L Sbjct: 127 LSNSLVDIVEDGYDLVFRTGD-LADSGLVARRLGPYPLVLCASPAYLASRPAIAHPSDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + F I + F D + P S VN ++ V G G+ L P Sbjct: 186 RHECLGFAHSIIRTRWSFR---DADGSVLTVPVSSRFMVNQAEPLLTAAVGGLGLILQPY 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++ LV ++ D + S + YP + T KL++F +F + Sbjct: 243 EMLAAALARGELVEVLPDHVPVSTWINLVYPRDRQLTPKLRSFLDFCLAR 292 >gi|330505841|ref|YP_004382710.1| putative LysR family regulatory protein [Pseudomonas mendocina NK-01] gi|328920127|gb|AEB60958.1| putative LysR-family regulatory protein [Pseudomonas mendocina NK-01] Length = 342 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 129/272 (47%), Gaps = 13/272 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F + SGS T AAE+L+L++S++ + ++ LE +G +L R R LTE G Sbjct: 46 DGVELFLQIVESGSLTEAAERLNLTRSAVGKGLARLEARLGTRLLQRSTRRQWLTEDGQA 105 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +LE + L+ +P G+L+ + + G + L + +P+++++ Sbjct: 106 YYEHCLRARAELEAAEAVLESGRQQPRGRLKASVPLAFGHHYAAPALWRLMDSHPELEVE 165 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQ 184 + ++ +D+ + D A+R+ S L R+L M AAP YL+ EP+ I+ Sbjct: 166 ISFSDRRVDMLQEGFDLAVRIGALPDSDRLSARRLGEQVMSLGAAPAYLQR-HEPIERIE 224 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 +L +H LI +G P W LA + RI S L ++ S+ + G G+A Sbjct: 225 DLARHRLIGYGSAAPSP----GWQLADEQGRMHHARIASALWLDDLQSVADAAIAGMGLA 280 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274 LP +++ ++ + P Y C P Sbjct: 281 WLPSWLLAHY-----VLRGQLQPVLAAYRCQP 307 >gi|307128805|ref|YP_003880821.1| transcription regulator [Dickeya dadantii 3937] gi|306526334|gb|ADM96264.1| Transcription regulator [Dickeya dadantii 3937] Length = 296 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V SGSF+ A+ +L + Q +IS+ I LE ++ +KL R RGLT TE G + + Sbjct: 7 LETFICVYESGSFSAASRRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L Q ++ + + SG LR++ + + + L F+ +P +++ +I Sbjct: 67 EQVAPALQQLHEAQDGVRGGNGELSGYLRVSAPVTFARLHVLPRLHVFMSQHPQLKVDII 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ + D A+RL + ++ S L RK+ + M A P Y P S + L+ Sbjct: 127 LDDRPVDLIAEGIDVALRLGE-MKDSGLTARKIGSAPMRLLATPAYFAARGTPASPEALE 185 Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + + NWL DR ++ ++ + + + G+G+ + Sbjct: 186 DHDAVIY----LQTDAPGNWLFCRDDRQCRVTMSGRIRTSAAEGVREAVLAGNGLTVASA 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + + D ++ YP + + +AF F+ Sbjct: 242 WMFAPELASGAVTTALADWHIGVMDLWAVYPGGRLTSARARAFTEFV 288 >gi|258624968|ref|ZP_05719894.1| putative transcriptional regulator [Vibrio mimicus VM603] gi|258582747|gb|EEW07570.1| putative transcriptional regulator [Vibrio mimicus VM603] Length = 309 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 144/291 (49%), Gaps = 11/291 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR SFT AA ++ ++++++S+ + LE ++ ++L R R ++LTE+G +L + Sbjct: 14 FAHIARHRSFTKAASEMGITRAALSQHLKALEQQLQVRLINRTTRNMSLTEEGQRLLDIL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +E EL +S V+PSG +RI+ + + L++ +L EFL YP I+++LI+D+ Sbjct: 74 QPALMSIEQVVNELNDSHVEPSGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELIMDD 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I + D IRL + + + AP Y K P + ++L+ HN Sbjct: 134 GFSNIVAEGVDAGIRLGISLDEHMVAVPITPPLTTAIVGAPDYFKRNGTPQNPEDLEAHN 193 Query: 191 LITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + ++ ++ L + D + EP+ + + N S++Q + G G+ D Sbjct: 194 CLAYRFTSSGTIDHWS-LTSPDIEKHTVVFEPKGNAV-FNDDHSMLQAAIQGVGLVKHID 251 Query: 247 YIVKDNPNLVRIMEDVITP---SFTVYFCY-PEALKNTGKLKAFRNFIFLK 293 V+ + N R + V+ P SF ++ Y P K++ +F+ K Sbjct: 252 LWVEKHINEGR-LSRVLAPWCKSFPGFYLYIPSREHMPKKIRVLMDFLIEK 301 >gi|239504242|ref|ZP_04663552.1| transcriptional regulator [Acinetobacter baumannii AB900] Length = 310 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 9/253 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LR F V + +F++ A + +S S ISR I LE +G +LFYR+ R +T TE Sbjct: 6 SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + Q LQ+ +++PSG +RI + GQ + L YP Sbjct: 66 SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+LI ++ ID + D R+ + SS R T + H A+P Y+ Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRI-GALTDSSFHARIFGTQNYHLAASPQYVAKYGTLD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 EL++H + + K E N WL + + + P L N+ S+M + G Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWLVRKSNEEWVHYPITPLLSSNNAESLMTAALHG 239 Query: 239 SGIALLPDYIVKD 251 GI L PD+++ + Sbjct: 240 MGIVLFPDWLIGE 252 >gi|238793749|ref|ZP_04637371.1| HTH-type transcriptional activator aaeR [Yersinia intermedia ATCC 29909] gi|238726990|gb|EEQ18522.1| HTH-type transcriptional activator aaeR [Yersinia intermedia ATCC 29909] Length = 303 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LETE+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVECGSFTGAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLNAGAGIAYAP 240 >gi|238029024|ref|YP_002913249.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] gi|237880601|gb|ACR32929.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 304 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 139/289 (48%), Gaps = 12/289 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W L VF VAR S T A ++L + S++ R+++ L+ +G +LF + R L+L+ +G Sbjct: 5 EWTDLMVFVEVARGPSLTAAGQRLGIDLSTVRRRLATLQDTLGRELFQKQGRSLSLSVEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + + + ++ +G ++++T G L L + +P + Sbjct: 65 ERIFHIAQRMEMLASEISNDFSDAERDLNGVVKVSTMEGFGSFYLAPRLTGLVKAHPGLS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 IQLI ++++ AD ++ + KP + L++ KL + +A P Y++ P ++ Sbjct: 125 IQLINSPHILNLAEREADISLNMMKPHRGRFLVE-KLAEFSVGLFAMPSYIEANGMPETM 183 Query: 184 QELDKHNLITF-GDLI--PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H +T+ DLI P + WL + + EPR+ L +S ++ G+G Sbjct: 184 ADLKEHTFVTYVEDLISVPYVL----WLPEI---LPEPRVQ-LSCSSLVAQYHATCAGAG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +A+LP ++ P LVR+ + I + L+ +++A F Sbjct: 236 LAMLPLFMAIKEPRLVRLFPEKINLMRDWWMVVHRDLEAVPRIRAVMEF 284 >gi|116254771|ref|YP_770607.1| putative LysR transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115259419|emb|CAK10557.1| putative LysR transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 294 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 145/293 (49%), Gaps = 17/293 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + ++L F V +GSFT AAE+L ++++ +S+Q++ LE E+ L R R + TE Sbjct: 3 AVNLNRLAYFAAVVDTGSFTKAAERLAITKTVVSQQVARLEAELKTSLLLRTTRRVEPTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L+ ++ + E+ ++ +P+G LRIA D G + + F+ YP Sbjct: 63 AGKLLYARCVLIFREAGDAVDEITRANSEPTGMLRIAAPNDYGASTIAPIAAAFIQKYPA 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NC 177 +++L+L + +D+ + D +IR+ + SS R++ + A+P + N Sbjct: 123 CRVELLLADTKMDLLANQIDLSIRVGW-LDDSSYQARRIGSFRQFLVASPSFSATLSLNS 181 Query: 178 REPLSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 E ++ Q NL ++ + ++ DF DR + S L NS +++ + Sbjct: 182 PEDVAGQPF-IANLALKEPVVWRFIQGDF------DRRTVRMQQS-LMSNSTPAVLAATL 233 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+GI++LPD++ ++ L+R++ D P+ +Y YP A K+ AF Sbjct: 234 AGAGISVLPDFLAGEHIEAGRLIRLLPDWTLPAGGIYVVYPAARFRPPKVTAF 286 >gi|260580803|ref|ZP_05848629.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae RdAW] gi|260582693|ref|ZP_05850481.1| DNA topoisomerase I [Haemophilus influenzae NT127] gi|1139588|gb|AAC43726.1| ORF2 [Haemophilus influenzae] gi|260092620|gb|EEW76557.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae RdAW] gi|260094259|gb|EEW78159.1| DNA topoisomerase I [Haemophilus influenzae NT127] gi|1587741|prf||2207242B ORF 2 Length = 305 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|134291770|ref|YP_001115539.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134959|gb|ABO59284.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 305 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G Sbjct: 6 SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V +++ + + + P G+L++ + + ++ L EFL +P I I+L Sbjct: 66 YERSVAVLREIDDMEASVSHARNVPRGRLKVNLPPAMARQVVVPALPEFLEAHPGIMIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ + DC +R+ + S +I +++ ++ A+P YL EP ++ +L Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCASPAYLARFGEPETVDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H + + W VD GEPR+ + VN + ++ V G G+ Sbjct: 185 AQH--VAVSHISADTGRPRVWDYVVD---GEPRVVQMCGTVAVNDADNYIECGVAGIGLI 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V + L ++ P + YP KLK F +++ Sbjct: 240 KTSLYLVDPYLKSGRLREVLTAFNAPPRPISVLYPPNRHIPVKLKVFVDWL 290 >gi|289676526|ref|ZP_06497416.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae FF5] Length = 252 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 118/245 (48%), Gaps = 9/245 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +VA GSFT AAE+L+L+ S+IS+ I+ LE + +LF R R L+LTE G +R Sbjct: 12 VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE +I L + +P GK+RI G+ + + +F+ +P +Q + Sbjct: 72 CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188 ++ +D + D +R+ + I + + A+P Y+ +P ++ +LD Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAIAHQFFGTQKLIFCASPEYVNQYGQPRTVSDLDA 191 Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H I +G IP + ++R I P I+ V + + G GIA L Sbjct: 192 HQCIGYGQNDGMAIPWYFKG-RQPGDMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247 Query: 245 PDYIV 249 P ++V Sbjct: 248 PTWLV 252 >gi|270261694|ref|ZP_06189967.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270045178|gb|EFA18269.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 309 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 136/295 (46%), Gaps = 22/295 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR GSFT AA QL ++ ++S+ I LET +G++LF R +R + L+++G + Sbjct: 8 LPFFEAVARLGSFTQAANQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGKIFY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + +++ +L+ +PSG LRI L+ L+EF YP++Q++L Sbjct: 68 RRVAPAMSQIDVAADDLRILRGQPSGLLRITLPQLAASLLVMPYLEEFQARYPEVQLELF 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHYLKNCREPL 181 D+ D+ + D IR+R +Q + QR++V A+P YL PL Sbjct: 128 TDDHFSDLVLGSFDAGIRMRAMLQKDMIAVPIDNGQRRVVI------ASPGYLAQRGVPL 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + L +HN + + P + W D + L N I + G G Sbjct: 182 TPAALSEHNCLRY--RFPGSGKFEPWYFRQNDEHLSLEVGGSLIFNEDRLIKDAALAGLG 239 Query: 241 IALLPDYIVK---DNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+ +N LV ++ D +P F +YF P + KL+ F +F+ Sbjct: 240 MTQRFRGTVQRELENGQLVEVLADYAGDSPGFFIYF--PASRHMPLKLRVFVDFM 292 >gi|167573428|ref|ZP_02366302.1| LysR-family transcriptional regulator [Burkholderia oklahomensis C6786] Length = 306 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVALTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ V + E E + G LR+ +T++ ++ L+EF +P ++++ Sbjct: 65 FYKRCLRVLAEAEEAIDEARGEHGGMRGSLRVTSTVEYALKVVAPALREFTSQHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLK-----NCR 178 L D+ D D AIRL + Q L R L T + +P L Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCLDTYDVRPVVSPALLAERGVVRIE 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVL 237 P ++ L + + + D V RP +P++ V S+++ + Sbjct: 185 SPDALARLPQLGHSRLSQVASWLLRDREGREHVFRPAAKPQM----VADNASVLRAFAQQ 240 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP+++V+ DN L+ + D P +VY YP K++A+ +F+ Sbjct: 241 GSGVALLPEWLVRDDLDNGTLIDALPDYRFPPQSVYALYPSTRHVPQKIRAWIDFM 296 >gi|116250075|ref|YP_765913.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254723|emb|CAK05797.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 20/296 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D ++L+ F VA +G + AA +L +S+S +SR++ LE E+G++L R RG LTE Sbjct: 1 MDIEELQTFVEVADAGGVSPAALRLGVSKSIVSRRLFRLEAELGVQLLARTTRGAALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G VT Y +I++ ++ P+ G+LR+A + GQ L E Sbjct: 61 G-----VTFRDYAARVCAEIDVARETILPAGDLRGRLRVAVPLSFGQTHFAPILAEMARR 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + I ++ +D+ + DCAIR+ +Q S+LI R++ I+ A+P Y+K Sbjct: 116 HPQLHIHTCYSDRFVDLITEGYDCAIRVGY-LQDSNLIARRVGPIYGKFVASPDYIKAHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + +EL H + G + M D + + TV RP G + ++ +++ V G Sbjct: 175 SPETPEELIAHEALMQGTEAWQLM-DGDKIITV-RPQGR-----FKADNGTALVAAAVAG 227 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA LPD + + + LV +M P Y P K++ + Sbjct: 228 LGIAYLPDCLTHEFIASGALVPVMTHYPPPPAGAYVIRPPGQHPARKIRVLTELLI 283 >gi|237800669|ref|ZP_04589130.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023528|gb|EGI03585.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 305 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 134/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFAKAAESLHVPRASVTIMIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + ++P G LRI + LG+ ++ L EF YP I++ Sbjct: 64 AYYLRCVSLLADLEEAEAAFSSKGIEPKGLLRIDVPVSLGRMIVIPALPEFTRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YLK PL + Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DDALVARPLGSLTQITCASREYLKRYGTPLDLH 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243 +L +H +I + + + + D + + + + V+S + C G G+ Sbjct: 183 DLRQHQVIEY--FATRASKRYGLEFMADGELDDYGMERSIAVSSAEGYVAACDAGFGLIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V L+ ++ + P + YP + + +++ F +++ Sbjct: 241 VPRYHVAAQLRTGALIEVLREYRPPPLPLTALYPPHRQLSRRVRVFVDWL 290 >gi|158423621|ref|YP_001524913.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330510|dbj|BAF87995.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 324 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 138/291 (47%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+F+ A+ L + ++++++ + LE + KL +R R +T+T G + Sbjct: 7 MRCFIGVVEAGTFSRASTVLRVPKATLTKNVQALEAHLRTKLLHRTTRRVTVTPDGEAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + S P G+LR+ + L LL L +F YPDIQI L Sbjct: 67 ERAVRLLADLEDLDSTMAVSQANPQGRLRVDISAALATMLLIPALPDFHARYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + DC IR + + SL+ R++ +H AAP YL+ P +L+ Sbjct: 127 VTDDVVDLLGENVDCVIRAGQ-LADQSLVARRIGEMHSVLVAAPGYLEAHGTPAHPLDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIA 242 + G P+ + + D + G ++ N+Y++ + G GIA Sbjct: 186 TSHR-AVGYFKPRMGRSLSLTLSKDADEAVEVNGRYMLAVSDSNAYITA---AMAGIGIA 241 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++P ++ + ++ LV ++ + P+ +Y +P + + +L+ F +++ Sbjct: 242 MMPVFMARPHIESGALVPVLTEWRAPAKPIYAVFPPSRHLSNRLRVFVDWV 292 >gi|146311552|ref|YP_001176626.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145318428|gb|ABP60575.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 297 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 126/251 (50%), Gaps = 9/251 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F+WD R+F +AR+G+ + AAE +++ +++SR++ LE + + LF RH G LT+ Sbjct: 5 FNWDDTRIFLAIARAGTLSGAAEAMNMGIATLSRRLDRLEKSLSVPLFSRHQSGYRLTDD 64 Query: 63 GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L + Y L ++ + V +G++R+AT+ +L + + +L + +PD Sbjct: 65 GEALLEHAEALEYAGLAFGEMARLQGHV--AGQVRLATSDNLAAHYILPSLNALMDKHPD 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++++ + +++ AD AIR+ KP S +L ++L + Y A Y+K C E Sbjct: 123 LRVEVLSGVQSVNLHRRDADLAIRMIKP-DSGNLTLKRLGNVGFGLYGAAAYIKTCAEGP 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + + + P+ + V R + R ++ N+ ++ + G G+ Sbjct: 182 ADVAFSHAQYVGW----PESHQHLPAARWVTRML-RGRACRMEANTLVAQLAAVSAGIGL 236 Query: 242 ALLPDYIVKDN 252 +LP ++ + N Sbjct: 237 GVLPHFMARKN 247 >gi|126175566|ref|YP_001051715.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|125998771|gb|ABN62846.1| transcriptional regulator, LysR family [Shewanella baltica OS155] Length = 339 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 107/188 (56%), Gaps = 1/188 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L +F V + GSF AA+ L L +SS+S++I+ LE ++G++L R R L LT+ G++L Sbjct: 23 NLYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQLGLRLLQRSTRQLNLTDSGTEL 82 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +T + L T +++ KPSG+++I+++ LGQ L L + L+P+I I + Sbjct: 83 LAITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILGQRYLLPLLPKLKQLFPEIVIDI 142 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ D A+R+ + + SSL+ R++ T +A+P YLK + +L Sbjct: 143 NLDDRVVDLIELGIDIALRVGE-LPDSSLVARRIGTKSWSCFASPAYLKQAAKLEVPSDL 201 Query: 187 DKHNLITF 194 H + F Sbjct: 202 AAHQCLIF 209 >gi|76818083|ref|YP_336378.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|167829598|ref|ZP_02461069.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|226194034|ref|ZP_03789635.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254185728|ref|ZP_04892246.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254264996|ref|ZP_04955861.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|76582556|gb|ABA52030.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] gi|157933414|gb|EDO89084.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|225933979|gb|EEH29965.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254215998|gb|EET05383.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 313 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 126/296 (42%), Gaps = 25/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYLLFVRHARGLALTPKGGALH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID +S D D AIR P +L L + A AAP YL R P Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGTLHVEPLFDESLVAAAAPAYLD--RHPPRAT 185 Query: 185 ELDKHNLITFGDL-----IPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +++ D P+ +E WL A V G PR + N + V G Sbjct: 186 AKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGP--EFNLASLAIAAAVAG 243 Query: 239 SGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ + +V D R++ V P+ C A ++KAF ++ Sbjct: 244 QGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAIC---ARPEDARVKAFVGWL 296 >gi|322515694|ref|ZP_08068667.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC 25976] gi|322118239|gb|EFX90531.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC 25976] Length = 291 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 24/293 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V S SF +AEQL + +S++S+ IS LE +KL +R R + T +G + Sbjct: 7 MRAFVRVVESLSFHKSAEQLGIPRSTLSKWISDLEQHYAVKLLHRSTRTVMPTAEGQAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ++ + G LR+ + + L L +F YP I++ L Sbjct: 67 LQAVRLLAEFDELEQQMHDKHRVVKGHLRVDMPMLFAEQLFIPKLPDFYQRYPQIKLTLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ++I+ D DC IR+ + + +LI RK A+P YL P + EL+ Sbjct: 127 ISDRAVNIAQDGVDCVIRIGE-VHDQTLIGRKFTDFDFVTCASPAYLTEYGVPQTPNELE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI-- 241 H LI + D N RP+ P++ Q N I+ G GI Sbjct: 186 NHRLIGY-------FSDING----TRPLCFPQVEMNQFHYSANGANGIVAMLKAGLGIGQ 234 Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 AL+ ++ LV I+ D PS Y E K + +L+AF ++++ Sbjct: 235 PLRALVQTWLYSG--ELVEILADYPHPSLPAYLLTHER-KQSARLRAFSDWVW 284 >gi|307544103|ref|YP_003896582.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216127|emb|CBV41397.1| transcriptional regulator, LysR family [Halomonas elongata DSM 2581] Length = 315 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 126/266 (47%), Gaps = 9/266 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW +++F VARS AA +L L S++SR+ E + +LF R G LTE Sbjct: 2 LDWQDIQIFLEVARSQRLADAARRLGLDHSTLSRRTRRFEQRLNTQLFERSTHGYHLTEA 61 Query: 63 GSKLHRVTSEVY-HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L E+ H E ++ L + + SG++R+ T G ++ L F +P Sbjct: 62 GHRLLAHAEEMARHAFEASE-SLTDQDHRISGQIRLGVTEGFGTWVIAPLLAAFCDRHPG 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + L+ + +++S AD AI + +P S L+ +L + Y + YL P Sbjct: 121 VTLDLLALPRVVNLSRHEADLAITIERP-SSPGLVISRLCDYRLRLYGSQDYLHRHGTPR 179 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRP--IGEPRIS-CLQVNSYLSIMQYCVL 237 + +L +H LI + DLI E N+L + P IG P ++ S + C+ Sbjct: 180 RLADLGQHRLIGYIDDLI--FSEQLNYLDPLLDPAVIGHPGPHFAMRGTSVTTQHSACLR 237 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI 263 G+G+A+LP ++ P L ++ D + Sbjct: 238 GAGLAVLPCFMGTTTPTLSSLLVDEV 263 >gi|304410463|ref|ZP_07392081.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307304555|ref|ZP_07584305.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|304350947|gb|EFM15347.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306911957|gb|EFN42381.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 19/282 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +++ D +R+F+VVA+ GSF AA+ L + S++SR+I+ LE +G++L +R A + LT Sbjct: 3 LNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ +L EL + GKLRI+ I+ L +L F YP Sbjct: 63 ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I I L L N +ID+S + D A R+ +P + I R L TI A Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISF-VLCASTSATQWHAL 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISC-LQVNSYLSIMQY 234 SI+ L++H +I I K ++ + + G EPR + L V+ Q Sbjct: 181 QSIEALEQHPVI-----IAKPVKTWRLQHNI---TGQNFEFEPRGNIKLAVDDMAIASQA 232 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 V G GI LLP + + + LV+I+ + T Y Y Sbjct: 233 VVAGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMY 274 >gi|217418966|ref|ZP_03450473.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|217398270|gb|EEC38285.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 358 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 28 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 87 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 88 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 147 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 148 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 207 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 208 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 308 >gi|167627607|ref|YP_001678107.1| LysR family transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597608|gb|ABZ87606.1| transcriptional regulator, LysR family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 294 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 104/192 (54%), Gaps = 2/192 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQ 62 ++D + +F + G+FT A+ L++SQS++SR+I LE V +KL R++RGL +TE Sbjct: 2 NFDDIFIFVRLIDIGTFTELAKHLNVSQSTVSRRIQNLEESVNMKLIKRNSRGLIEMTED 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +R ++ + TT ++ S + SG L++ N+L L F YP++ Sbjct: 62 GESFYRSFKDIEKQANTTLQQIVNKSKEISGTLKVGIPKLFLDNILANKLGIFYARYPNV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ +D+ D D AI ++KPI SS I + LV YA+ Y++ +P Sbjct: 122 KLVFSYTAGIVDLVKDDIDIAITIKKPITSSCTI-KTLVRAKNKLYASQDYIQTYGQPNL 180 Query: 183 IQELDKHNLITF 194 +++L+ H+++ F Sbjct: 181 LEDLESHDVVGF 192 >gi|221067386|ref|ZP_03543491.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220712409|gb|EED67777.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 287 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 18/297 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + LR+F AR S T AA++LH++Q+++S+ I LE +G LF R RGL LT Sbjct: 1 MQLPLNALRMFDAAARHLSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G L V ++ + ++E + ++ E +P L + L L +F L+P Sbjct: 61 DEGQALWPVVAQSFERIEQSLQQVAEP--RPREILSVGVVGTFAIGWLIPRLSQFQQLHP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L+ +N +D++ + D A+R + Q L+ + P + REP Sbjct: 119 YIDLRLLTNNNRVDLAGEGLDAAVRFGDGAWHGTHAQ-MLLRAPLSPMCTPMLAQQLREP 177 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L + L+ + E W A +D+ P +S L++ + G+G Sbjct: 178 ---ADLARQTLLRSY----RTQEWEGWFAGLDQTA--PLARGAMFDSSLTLAEAAAQGAG 228 Query: 241 IALLPDYIVK---DNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IALLP + + LVR +V T ++ + Y ++ + + L+ FR ++ + Sbjct: 229 IALLPARMFEHMLQQGRLVRPFAHEVDTGAY--WLTYLKSRQASSALQTFRQWLMTQ 283 >gi|169796328|ref|YP_001714121.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|301347079|ref|ZP_07227820.1| LysR family transcriptional regulator [Acinetobacter baumannii AB056] gi|301510611|ref|ZP_07235848.1| LysR family transcriptional regulator [Acinetobacter baumannii AB058] gi|301595033|ref|ZP_07240041.1| LysR family transcriptional regulator [Acinetobacter baumannii AB059] gi|332852016|ref|ZP_08433883.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332871769|ref|ZP_08440209.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169149255|emb|CAM87138.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|332729593|gb|EGJ60931.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332731239|gb|EGJ62537.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 301 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 137/261 (52%), Gaps = 14/261 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A +++ S++S+ IS LE +G++L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + L+ + + + + P G++RI T+ + L + F YP+I+++ Sbjct: 71 YEQGIQILNDLDELEQSVTANHI-PKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEA 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ D AIR P++SS+L+ R L + + H+ +P Y++ P EL Sbjct: 130 HLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H L+ + ++ WL AT + + ++ L+VN +I+Q + G+GIA Sbjct: 189 HEHQLLD----VSYQRQNKTWLFKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQ 242 Query: 244 LPDYIVKD---NPNLVRIMED 261 L ++ +++ LV+I+ED Sbjct: 243 LNEFQIRNALQQKQLVKILED 263 >gi|167033289|ref|YP_001668520.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859777|gb|ABY98184.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 306 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 12/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L +F + A SGSFT AA ++ +++SR ++ LE +G +LF R R + L+ G Sbjct: 12 SLELFCLAADSGSFTAAAALAGVTPAAVSRNVARLEERLGARLFVRTTRQMRLSAAGHAY 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L + ++ ++PSG LRI+ + L L F YP +++ + Sbjct: 72 YLQCRQALGQLVEAERQVTGGQIEPSGLLRISAPTPYAHHRLLPLLPRFRQRYPQVRVDV 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+++D + + D AIR R+P S L+ R+L + A P YL P +L Sbjct: 132 HVSNRNVDFAEEPFDLAIRGREPA-DSRLVARRLEDAELVVVATPGYLAGAGMPQVPHDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPI---GEPRISCLQVNSYLSIMQYCVLGSGIA 242 H I F +P W D R + + ++CL +L+ G G+ Sbjct: 191 QHHECIQFE--MPSSGRRPPWTFRQDGRQVEVETQGALTCL--GDFLATATLVRHGGGLM 246 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 + V+D + LV ++ S YP+A +++ F +F+F +A Sbjct: 247 QAYRFTVQDALVSGELVEVLTAFGGTSRPFMLIYPQARHMPLRVRVFIDFLFAEA 301 >gi|76818993|ref|YP_337480.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|76583466|gb|ABA52940.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] Length = 354 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 24 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 83 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 84 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 143 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 144 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 203 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 204 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 258 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 259 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 304 >gi|89067638|ref|ZP_01155092.1| hypothetical protein OG2516_00514 [Oceanicola granulosus HTCC2516] gi|89046608|gb|EAR52663.1| hypothetical protein OG2516_00514 [Oceanicola granulosus HTCC2516] Length = 294 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 19/294 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V+R GSFT+AA++L+++QS++SR I GLE + ++LF R R + LTE G Sbjct: 9 NALRTFEAVSRHGSFTNAADELNVTQSAVSRMIKGLEEHLELQLFERAGRQIRLTEDGVY 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S+ LE EL ++ G L I G L L F+ L+P++ + Sbjct: 69 YSEKISKAMDILEVASRELIDTKAG-RGTLSIGMLPTFGTKWLLPRLGSFMQLHPELTVD 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ++D + + D AIR + + L++ + +P + + Sbjct: 128 VTSSDGELDFADERIDVAIRFGYGNWPGARAE-PLMSEELQVVCSPRIMDGPYPLTDYAQ 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+LI P +WL V E L++ + ++Q G GI LLP Sbjct: 187 LRRHSLIAHSSR-PGTWS--HWLQAVGAST-EGYDKGLRLEHFYMVLQAAKSGLGIGLLP 242 Query: 246 DYIVKDNPNLVRIMEDVITPSFTV--------YFCYPEALKNTGKLKAFRNFIF 291 Y+ D+ I +T F V Y P + +++AFR ++ Sbjct: 243 SYLAADD-----IANGSLTAPFPVRVVSPGGYYLVTPWDKTDLPRVQAFREWVL 291 >gi|323498515|ref|ZP_08103508.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323316404|gb|EGA69422.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 306 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 17/277 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 KL + V+R+GSF AA++L+L +S +S+QI LE ++G+KL R R ++LT G ++ Sbjct: 6 KLTLLLEVSRNGSFAKAADKLNLDRSVLSKQIKQLEEQLGVKLVNRTTRSMSLTSVGKRV 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +V LE T +P+G LR+++ G+ LQ +++FL +P I+L Sbjct: 66 VEQAEKVTLILEDTISIADSHHSEPTGHLRVSSATMFGRVYLQAAVEKFLEKFPKASIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L+++ +D+ + D R+ P++ SS+I ++L + A+ ++ P S +EL Sbjct: 126 LLNDERVDVVSEGFDIVFRI-GPMRDSSMIAKRLAENKVAIIASKDFVAKHGMPTSPEEL 184 Query: 187 DKHNLITFGDLIPKCMEDF--NWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 + + +G+ +F + L D+ G+ P S +VN I++ G Sbjct: 185 VELPGVIYGN------SNFVVDKLQFADQDSGQSIVYPIKSNYRVNEAELIVESVKASIG 238 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCY 273 A + +++ + LV+++ D+ PSF +Y Y Sbjct: 239 YAQIGQFMIPGDLEQMGLVQLLPDLYLPSFGDIYAMY 275 >gi|300689818|ref|YP_003750813.1| transcription regulator protein, lysR family (aaeR) [Ralstonia solanacearum PSI07] gi|299076878|emb|CBJ49491.1| putative transcription regulator protein, LysR family (aaeR) [Ralstonia solanacearum PSI07] Length = 298 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 128/297 (43%), Gaps = 30/297 (10%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V +G+FT AA QL +S + + + LET +G +L R R +LT+ Sbjct: 2 DKLRGMETFVAVVDAGNFTEAATQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V ++ + ++ +PSG LR++ G ++ F +P + Sbjct: 62 GRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D++ + D A+R+ + + L+ + L M AAP YL P + Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRV-GALGDADLVAKPLCAYRMVICAAPEYLARHGRPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPI---GEPRISCLQVNSYLSIM 232 +L H +C+ W L DR +P SC N + Sbjct: 181 PADLPAH----------RCLSHMVWNSRNAWQLPGWDRTTPWRNDPAFSC---NDGHGLR 227 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G+G+ L P+ +V ++ LVR+++ V+ Y + KL F Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPVHLVYRQDRSPLPKLTGF 284 >gi|237508790|ref|ZP_04521505.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|235000995|gb|EEP50419.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] Length = 358 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 28 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 87 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 88 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 147 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 148 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 207 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 208 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 308 >gi|239997201|ref|ZP_04717725.1| LysR protein [Alteromonas macleodii ATCC 27126] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 136/297 (45%), Gaps = 20/297 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +L VF+ +A GS + AA QL ++ S+S + LE VG+ LF R R + LT+ G Sbjct: 6 FQQLIVFHAIADEGSISGAARQLEMAPPSVSHALKSLEASVGVPLFNRTTRRVELTDAGK 65 Query: 65 KLHRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L + T +H ++T I +E S P G +RI T Q LL +EF YPD Sbjct: 66 LLKQQT---HHAIDTLDIAFEEVNALSYTPRGTVRITTPRFAFQQLLAPYYQEFCERYPD 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++++ +++ +++ D D IR I+ + +R + +PHY K P Sbjct: 123 LKLEVSINDAAVNLITDGMDVGIRFGDRIEEGMVAKRLTNATKECLFCSPHYAKKYGLPS 182 Query: 182 SIQELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 SI L +H L IT L P + +V PI + VN ++ Sbjct: 183 SIDSLQQHKLIQYRFITSNKLAPLHLWQNQQAVSVSMPI------AMVVNDTDLMIDAAK 236 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI + + +V + LV ++++ P ++ + + + +++A +F+ Sbjct: 237 KGLGIGRIVEPMVDELFQTGELVPVLKENWFPYSGLFMYFQQHSQKAQRIRALIDFL 293 >gi|187924323|ref|YP_001895965.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715517|gb|ACD16741.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 344 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 13/287 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA GSF A ++L + +SS+SR + LE + +LF R R +LT +G + Sbjct: 39 FLAVANEGSFARAGDRLGIGRSSVSRNVQKLEALLDARLFLRTTRSTSLTREGELFYENC 98 Query: 71 SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ +++E + P G LRI + G+ ++ L+ F YP+I ++L+L+ Sbjct: 99 QPGIERIAQALEDMRELRNGPPRGHLRIVSAPGFGRKIVAPLLRGFHTRYPEIALELLLN 158 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D + D D + + ++ S ++ R+L+ + M A+P Y + P I EL H Sbjct: 159 DRPADFTTDRVDVSFHDGR-LEDSGIVARQLIPMQMLVCASPAYARRHGLPRHIDELADH 217 Query: 190 NLITFGDLIPKCME---DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I F + E N L +P+ + N I+Q + G GIA LP Sbjct: 218 RCINFLAASGRIREWEFKVNGLPQRRQPVAQ-----HTFNDPDLIVQAVLDGLGIAQLPA 272 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V D L+ + Y CY + +++ F +++ Sbjct: 273 YQVCDLLAGGQLLSCLAQHAPEDGGHYLCYLSRKQLPARVRVFVDYM 319 >gi|293395045|ref|ZP_06639332.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422452|gb|EFE95694.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 295 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 11/285 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F +A+ GSF+ AA +L + SS+ R I LE ++G+ LF R RGL LT+ G Sbjct: 8 EHLPIFLEIAQQGSFSAAARKLGMVPSSLVRHIDTLEQQLGVVLFIRSTRGLILTDAGDM 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + EL + P G LR++ G+ L L +P + ++ Sbjct: 68 LKNRAIALQADIIAVRAELTSLNTAPQGVLRLSCLPTFGKTTLLPLLPTLTQRHPKLSVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D + D A+R+ + + S+L ++ T A+ Y+ P S+ Sbjct: 128 LDLTERQTDPKRELLDAAVRIGEQ-KDSTLYASRIGTQRWMMCASADYVARFGRPDSLAA 186 Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H LI F P C W +D P+ L+ + + + Q + G GIA L Sbjct: 187 LTQHRLIGRFHKQQPAC-----WAQILDAPLLNQCNIVLRCDDFSAQRQATLSGMGIAFL 241 Query: 245 PDYIVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAF 286 P+++V D+ R++ + P +Y P A K + KL A Sbjct: 242 PNWVVGDDVQANRLLALMGGPRGEEQAIYLMRPVA-KISAKLAAL 285 >gi|115372418|ref|ZP_01459727.1| transcriptional regulator, LysR family [Stigmatella aurantiaca DW4/3-1] gi|115370631|gb|EAU69557.1| transcriptional regulator, LysR family [Stigmatella aurantiaca DW4/3-1] Length = 288 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 135/284 (47%), Gaps = 9/284 (3%) Query: 13 VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72 V +G+F AAE L L+QS +SR ++ LE VG++LF R AR ++LT++G + + + Sbjct: 3 AVVEAGNFVRAAEALGLTQSGVSRAVARLEQRVGVRLFDRTARAVSLTDEGRRFYEEVAP 62 Query: 73 VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132 +E ++ G LR+ G +L L EFL L+P++ +L++ ++ Sbjct: 63 HLAGIEDAATAATGAAATVRGHLRVNADAAFGHYVLAPRLGEFLALHPELSFELVVRDRI 122 Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK--HN 190 D+ + D A+R +P + SSLI R++ + A+P Y+ P EL + H Sbjct: 123 GDLVAEGLDMAVRFGEP-EPSSLICRQIGRSQVLTCASPEYVARRGRPKHPSELARGAHE 181 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249 I + F+W R + + + L VN S++ + G G+ ++ V Sbjct: 182 CILVRNTW--TGRHFDWEFHQGREVVQVDVQGRLMVNDSGSLISAMLSGHGVGQPFEFSV 239 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D+ LV+++ + V+ + K++AF +F+ Sbjct: 240 RELIDSGRLVKLLPAWSDERYPVHVYHRSREFPAAKVRAFIDFL 283 >gi|332530215|ref|ZP_08406162.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040336|gb|EGI76715.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 304 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 131/271 (48%), Gaps = 12/271 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F +A GS T AAE L+LS++ +SR + LE+ +G +L +R R ++L+ G + Sbjct: 9 IRSFVEIADQGSLTRAAETLNLSRAMVSRHLENLESWLGARLLHRTTRKVSLSAAGEEAL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ Q + G+LR+ T++ ++L ++ +F L+P I+I L+ Sbjct: 69 PRMRQMLELAADLQAVAGVRRSEAQGRLRVTTSLSFALSVLTQSVVDFQALHPRIEIDLL 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D A+R+ + S++ R+L T AAP YL + P + ++L Sbjct: 129 TIDRSVDLVSERIDLAVRITNRLD-DSVVARRLATCRSVLCAAPSYLADRGTPAAPEDLA 187 Query: 188 KHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H IT FG ++ L R + + L + + Q + G+GIA+LP Sbjct: 188 AHRCITHAFG-----TRAEYR-LGRSGRLLTQAVSGTLSGHETAVLKQAALAGAGIAMLP 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 Y V + LVR++ D + ++ Y Sbjct: 242 TYFVVEEMRRGALVRVLPDHEPEALGIHALY 272 >gi|311277552|ref|YP_003939783.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1] gi|308746747|gb|ADO46499.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 125/271 (46%), Gaps = 7/271 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L L + S+SRQI LE +GI+L +R R + LT+ G + Sbjct: 7 MQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENHLGIRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SG+LR+ + + +NL+ L FL YP I+++L Sbjct: 67 ERAKDLLSNLDELDGMFQHDPSSISGRLRVDMPVAVAKNLVIPKLPAFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S L+ R+L + + A+ YL P +L Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLVARQLGKLTIINCASQGYLARFGYPERPDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H LI + I + F VD + + L VNS + C+ G GI P Sbjct: 186 GHALIHYSANIGVRPQGFEM--KVDNAVRWVKTGGVLTVNSTETYQAACLAGLGIIQAPR 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 V+D + LV I+ V YP Sbjct: 244 IGVRDALRSGQLVEILPQYRAEPMPVSLIYP 274 >gi|241664781|ref|YP_002983141.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240866808|gb|ACS64469.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 298 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 125/287 (43%), Gaps = 20/287 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q ++ R + LE +G+ LF R +GL+ TE Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFLRTQQGLSPTEAAL 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L LE T L ++ G +RI + + +L L + YP Sbjct: 68 SLR----PFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L+ N+ D+ AD A+R++ P Q L+ R L I + +A YL P Sbjct: 124 ELTLELVPSNRMEDLLRREADIAVRMQPPSQ-GVLVARHLGGIELGLFAHQRYLAQRGMP 182 Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +I+EL H LI + + F W+ + L+ +S L+ + Sbjct: 183 TTIEELAGHTLIGYDKENAFLRSMRAQFPWV--------QRNRFALRTDSDLAAIAALRA 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G GI + + N +LVR+ + I + + E L+++ + + Sbjct: 235 GFGIGFCQVGLARHNADLVRLFSEQIAITLDTWLAMHEDLRDSPRCR 281 >gi|255319115|ref|ZP_05360336.1| transcriptional regulator, LysR family [Acinetobacter radioresistens SK82] gi|262378144|ref|ZP_06071301.1| transcriptional regulator LysR family [Acinetobacter radioresistens SH164] gi|255303917|gb|EET83113.1| transcriptional regulator, LysR family [Acinetobacter radioresistens SK82] gi|262299429|gb|EEY87341.1| transcriptional regulator LysR family [Acinetobacter radioresistens SH164] Length = 312 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LE +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMELTTAQVSRLISELEGRLGTKLLQRSTRQHALTDIGASYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +E + + + +P G+LR+ + G + + + EF +P + ++ Sbjct: 73 EQCRQVLAMVEEAETQAMGMATEPQGRLRVLSMGSFGHHYISPVMAEFCQNHPKLTVEYR 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YLK EP S+ +L Sbjct: 133 TSQNVPDLLGKGIDVSLYLTESLTDSRFVARQIGTIFSLLCASPAYLKKYGEPESLDDLQ 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 KH + + P ++ ++ L ++ ++ GIALLP + Sbjct: 193 KHACLRLVN--PSITPQWHLISKNSCSYQVDITGPLIADTPELLLDMVQQDMGIALLPTF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 V + L R++ D +P VY P R+FI K R W Sbjct: 251 TVIEAVRTGRLCRVLADWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|149190788|ref|ZP_01869053.1| LysR-family transcriptional regulator [Vibrio shilonii AK1] gi|148835350|gb|EDL52322.1| LysR-family transcriptional regulator [Vibrio shilonii AK1] Length = 300 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 19/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++L VF + + GS T AA++L ++ S+S + LE E+G+ LF R R + +TE G Sbjct: 6 FNQLIVFNTIVQEGSITRAAKKLEMAPPSVSNALKALEQELGLPLFTRTTRRVEVTEAGR 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 LH T +L + + S P+G +R+ + Q L++ EF YP IQ+ Sbjct: 66 LLHERTLHSISELSLAFESVSDLSRDPTGTVRVTMPRFVYQYLIEPIYAEFCHQYPHIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183 ++ + + IDI + D IR ++ ++ R L T A +A+P Y+++ +P Sbjct: 126 EISVSDATIDILNENFDLGIRFGNKVE-EGMVARPLTTSMKEAFFASPAYIEHYGQPSCP 184 Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L H LI + + P + + +V+ P + + VN ++ + G Sbjct: 185 DDLKHHKLIQYRFISSNKIAPLLLNKQGEMLSVEMP------TSMVVNDTNLMVDAAIKG 238 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + +++ + LV I+ED P +Y + KNT K K R I Sbjct: 239 LGIGRLVEPMIQSHIAQKQLVPILEDYWYPYSGLYVYFH---KNTQKAKRVRVLI 290 >gi|37676920|ref|NP_937316.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|320159012|ref|YP_004191390.1| putative lactate-responsive regulator LysR family [Vibrio vulnificus MO6-24/O] gi|37201464|dbj|BAC97286.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|319934324|gb|ADV89187.1| predicted Lactate-responsive regulator LysR family [Vibrio vulnificus MO6-24/O] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 8/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE+ L+ S +S++I+ LE E+G +L YR R LTLTE G Sbjct: 4 DDLILFSQVVEQGSFSKVAEENSLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF +P + + Sbjct: 64 LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNQHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL + Sbjct: 124 MSLDNRFVDLVSGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKHGKPLIPSD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L +HN + + E W ++ R++ C ++ ++ + + G GIA + Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKGEKGNYIVRVAGCFSTDNATALRKAALGGHGIAYV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P +V N LV I + + +Y YP Sbjct: 240 PRCLVYHDFRNGQLVDIFPEQVGKKLGIYAVYP 272 >gi|301170116|emb|CBW29720.1| predicted DNA-binding transcriptional regulator [Haemophilus influenzae 10810] Length = 305 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|15597730|ref|NP_251224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9948591|gb|AAG05922.1|AE004681_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 303 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F + G+F AA+ L L ++S+++ I LE +G++L R R ++LT G Sbjct: 4 FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + P G+LR+ LG+ + L EF YP++++ Sbjct: 64 AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL +++ +D+ + ADC +R+ + + SSL+ R L + A+ YL+ P + Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H + + P F++ +VD R P S + VN+ + + C G G+ Sbjct: 183 ELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + +L +++ + + PS ++ YP + + +++ F +++ Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLALHAVYPSQRQLSPRVRVFVDWL 290 >gi|322614000|gb|EFY10936.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617892|gb|EFY14785.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625493|gb|EFY22319.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629958|gb|EFY26731.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632153|gb|EFY28904.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636497|gb|EFY33204.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643131|gb|EFY39705.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644648|gb|EFY41184.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651328|gb|EFY47712.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652756|gb|EFY49095.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659057|gb|EFY55309.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663241|gb|EFY59445.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668727|gb|EFY64880.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674469|gb|EFY70562.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678324|gb|EFY74385.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682418|gb|EFY78439.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684132|gb|EFY80138.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192312|gb|EFZ77544.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196260|gb|EFZ81412.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201408|gb|EFZ86474.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206482|gb|EFZ91443.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212074|gb|EFZ96901.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216979|gb|EGA01702.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220344|gb|EGA04798.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224392|gb|EGA08681.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228321|gb|EGA12452.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233412|gb|EGA17505.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237127|gb|EGA21194.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243658|gb|EGA27674.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246098|gb|EGA30085.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250878|gb|EGA34756.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257629|gb|EGA41315.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261836|gb|EGA45403.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266107|gb|EGA49598.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268651|gb|EGA52118.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 122/279 (43%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 7 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 67 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLPTFLHQYPGIALELC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R P+ + ++ R L + A+P YL P ++ +L Sbjct: 127 SSDRQVDLLREDFDCVVRT-DPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 186 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 236 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 274 >gi|296390569|ref|ZP_06880044.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 304 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 12/274 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D L F V+ GSFT AAE+L S+ +S++I LE ++G+ L +R R L+LT G Sbjct: 3 DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + + E + + + G++R+ + LG+ L L++F +P ++ Sbjct: 63 AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L N D+ + D AIR Q + L+ R L + A+P YL EP Sbjct: 123 VELDLYNGLRDLVGEGFDLAIR-SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242 EL + + L WL + R+S +++ S+++ L G+GIA Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRRHRLERVRVSGFLASNHYSLLKKAALAGTGIA 237 Query: 243 LLPDYIVKDNPN------LVRIMEDVITPSFTVY 270 LP Y+V D L+R + TP F V+ Sbjct: 238 RLPSYMVHDELGDGRLAWLLRAYQTRSTPMFLVH 271 >gi|157371338|ref|YP_001479327.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323102|gb|ABV42199.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 126/274 (45%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VAR SFT AA +L +SQS++S I GLE + ++L R R + TE G Sbjct: 5 NFNDLISFLMVARERSFTKAAAKLGVSQSALSHAIRGLEERLELRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++E+ L E +P+G +RI ++L LK FL YPDI Sbjct: 65 ERLLNSIGPRFAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKTFLADYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ LDN DI D IRL + + + R + + A+P Y + P + Sbjct: 125 VEITLDNTLTDIVSGRFDAGIRLGEQVAKDMVAVRIAADMRLIPIASPAYFEQYGTPTTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 QEL H I +P + W D R I L NS + LG GIA Sbjct: 185 QELQNHRCINM--RLPTMGGLYAWEFEKDGREIKVRVDGQLTFNSLRQRIDAARLGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P V D + LV+++ D P F Y+ Y Sbjct: 243 FVPQDSVTDELADGRLVQVL-DEWCPRFPGYYLY 275 >gi|91779417|ref|YP_554625.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692077|gb|ABE35275.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 324 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 28/300 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F A GS T AA++L + S+ SR ++ LE ++ I LF R RGL+LTE G + Sbjct: 25 VRTFVRAAELGSLTRAAQELSIKTSTASRHLNELEADLRIALFNRSTRGLSLTEGGKVFY 84 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 SEV +L+ + + PSG LR+ + G+ + ++ EF+ Y DI ++ I Sbjct: 85 ARVSEVLTQLKDARDATSSLNQSPSGVLRVTLPVSFGRKHVVPHIGEFMDRYRDIDVEAI 144 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +++ D IR+ +Q SSL+ R+L A AAP Y + C P++ L Sbjct: 145 FTDDVLNLIESQIDLGIRI-GALQDSSLMARRLAPHREVACAAPAYARACGVPVTPGALK 203 Query: 188 KHNLITFGDLI-------PKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H + F + P+ W ATV+ L ++ +++ + G Sbjct: 204 DHACLMFSRTVGNVWYVRPREDTAAEWQKATVN--------GRLTLDDTDALLAVALAGR 255 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF---------TVYFCYPEALKNTGKLKAFRNFI 290 GIALLP ++ + + R+ I P + +++ YP + K+++F +F+ Sbjct: 256 GIALLPGWLAHEPLSDGRLTS--ILPGWEIRSSREEASIWAVYPRKKTVSSKVRSFIDFL 313 >gi|332530214|ref|ZP_08406161.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040335|gb|EGI76714.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 309 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 16/255 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + VF V R GSF AA QL + +++SR++ LET++G +L R R L+LT Sbjct: 2 LDLNDVAVFVQVVRYGSFAEAARQLGIPPNTLSRRVQQLETQLGTRLMQRSTRKLSLTTA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + H ++ L L + PSG +R+A D L FL +P + Sbjct: 62 GQEFHDRCAQAVEGLVDAGQSLLSRNETPSGLVRVAAPADFFDFFPMEWLASFLAEHPRV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181 ++ +L + D+ D D AIR ++ S L R+++ + A+P Y+ P Sbjct: 122 RLDFVLSDARADLIADRIDVAIR-GGVLEDSGLFARRVLDAGLDGLVASPAYIAARGMPA 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYC 235 S+Q+L H+ + F + W + P G + + +QV LS + + Sbjct: 181 SLQDLADHDCLVFAHPAGQA----TW--GLSGPDG--KDATVQVAGRLSGNTVQVLRKAA 232 Query: 236 VLGSGIALLPDYIVK 250 + G GIALLP + + Sbjct: 233 LAGMGIALLPSTMTR 247 >gi|328469288|gb|EGF40234.1| LysR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 8/283 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE +L+ S +S++++ LE E+G +L YR R LTLTE G Sbjct: 4 DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D D IR ++ SSLI R ++ A+P Y+ +P+ + Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L HN + + E W D R+S ++ ++ + + G GIA + Sbjct: 183 LTSHNCLQYAYQTTGASE---WEFKSDEGNYIVRVSGSFSTDNATALRKAALGGHGIAYV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 P +V N LV I +++ +Y YP + K+K Sbjct: 240 PRCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282 >gi|315126504|ref|YP_004068507.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315015018|gb|ADT68356.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 317 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 123/267 (46%), Gaps = 15/267 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ + F V GSFT AA+ L LS + ISR ++ LE + +L R R + LT++G Sbjct: 31 WEGIDEFIAVGEEGSFTQAAQTLGLSVAHISRHVTKLEQRLNTQLLTRTTRKVVLTKEGE 90 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + H ++ L P GK+++ + G++ + + F+ +P++++ Sbjct: 91 QFLHQVKHLQHAMDEATQGLASVQTSPKGKIKLTAPVMYGESFIMPIVHSFMHDHPEVEV 150 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ ++ D AIRL ++ SSL R+L + A+P YL EP ++ Sbjct: 151 IATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSSRRFIMCASPAYLARFGEPHTLG 209 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL+ H + + E+ D+ I R+ C NS +++ + G GI Sbjct: 210 ELNNHQCLIGNSSYWRVNEN-----NRDKHIKVAGRLHC---NSGWALVDGAIKGLGIVQ 261 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVY 270 LPDY +++ I + P T Y Sbjct: 262 LPDYYIEN-----EIKSGQLVPILTAY 283 >gi|239815885|ref|YP_002944795.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239802462|gb|ACS19529.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 320 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V SG F+ AA L ++ S++S+ ++ LE +GI+L YR R L LT +G Sbjct: 11 EMEAFVQVVESGGFSAAARLLDMTPSAVSKLVARLELRLGIQLVYRSTRKLQLTPEGLHF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ V ++ + + P G++ I ++ G + L + L L+P I + + Sbjct: 71 YERSTRVLADMDEAE-RCAAAGAAPRGRVSINASVSFGHHKLVPLVPRLLELHPQITLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + AD AIR + + S L+ R+L A+P YL P + QEL Sbjct: 130 ALTDRIVDLMDERADIAIRWGQ-LPPSDLVARRLGETSQSIVASPGYLAKYGTPRTPQEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + HN + + +W VD R I P ++ ++ Q + G+G+A L Sbjct: 189 EAHNRLGWS----YRRNTPDWPLRVDGRMIAVPVAGPVRAGDGETLRQLAIAGAGVARLS 244 Query: 246 DYIVK---DNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V+ D LV ++E+ + P VY L +++A +F+ Sbjct: 245 LYHVQHDIDAGRLVPLLEEFNPGEVEPIHAVYIGKAGTLP--ARVRAVLDFL 294 >gi|126739085|ref|ZP_01754779.1| probable transcription regulator protein [Roseobacter sp. SK209-2-6] gi|126719702|gb|EBA16410.1| probable transcription regulator protein [Roseobacter sp. SK209-2-6] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 8/258 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L + V G+F+ AA L + S++ +++ LE + + L R R +TLT G + Sbjct: 6 ELEILLAVVDHGNFSAAARALGYTPSAVGKRVHQLEQRLKVPLLVRSTRRMTLTGAGRRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 E++ +L + ++ + + G +R+ ++ LG+ + + EF+ +PDI+I+L Sbjct: 66 VEEARELFVRLTALEDDITDDADTLRGTIRLTSSAALGRLHVVPLVIEFMERHPDIEIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 IL +K ID+ D D AIR + SSL+ R+L++ +AAP YL+ P ++L Sbjct: 126 ILTDKIIDLISDGFDLAIR-SGILPDSSLVSRRLMSNRRRPFAAPAYLEQHGVPEKPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + G FN + +G P C NS ++ C GIA LP+ Sbjct: 185 VTHKCLRLGQERQVSDWGFNGRQGGNVRLG-PGFLC---NSLEALHAACCAERGIAWLPE 240 Query: 247 YIVKDN---PNLVRIMED 261 ++V + LV ++ED Sbjct: 241 FLVSNGVHEGRLVPLLED 258 >gi|325521474|gb|EGD00293.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 201 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 102/182 (56%), Gaps = 1/182 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF +VAR SF+ AA+ L +S S +S+++ LET +GI+L +R R +++T+ G +++ Sbjct: 13 LRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAGERVY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +E ++ + P G LR++++ G+N++ L E +P + ++L Sbjct: 73 AWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLNVRLE 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D++ + D IR+ I + LI ++L T H A+P YL P + +L Sbjct: 133 LFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKRLATNHRVLCASPDYLARHGMPKQVGDLA 191 Query: 188 KH 189 H Sbjct: 192 SH 193 >gi|326318738|ref|YP_004236410.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375574|gb|ADX47843.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 330 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 146/302 (48%), Gaps = 26/302 (8%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R F VAR +F AAE+L L+QS++SRQI LE EVG+ LF RH R + LT G++L R Sbjct: 21 RAFLAVARHLNFRAAAEELSLTQSAVSRQIQALEDEVGVPLFLRHTRAVELTSAGAQLQR 80 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + +L+ + +++++ + S + I T L ++EF PDI I+ + Sbjct: 81 AVAPALERLDASVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRDNPDIDIR--I 136 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLI-QRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184 D D+ + ++ AD + LR + S L ++L + A+P LK+ R+P + Sbjct: 137 DASDVSVDLETADVDLALRYAVPGSQLQGAQRLFGEQLAVVASPWLLKSGPPIRKPADVA 196 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238 + LI GD WL T R + S LQ +L I+Q + G Sbjct: 197 QF---TLIEAGDAHRTAY--LEWL-TWRRWFEQNGQSKLQPKRWLYFNYAHQIVQAALTG 250 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY--PEALKNTGKLKAFRNFIFLK 293 G+AL ++ D + +LV ++ S VY+ P + + ++KAF +++ + Sbjct: 251 QGLALARMPLIADSLASGDLVEVLPGYRLDSPLVYWMLVGPRSGQRP-EIKAFCSWLLRE 309 Query: 294 AR 295 A+ Sbjct: 310 AQ 311 >gi|260598476|ref|YP_003211047.1| hypothetical protein CTU_26840 [Cronobacter turicensis z3032] gi|260217653|emb|CBA31971.1| hypothetical protein CTU_26840 [Cronobacter turicensis z3032] Length = 391 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 5/245 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + GS T AA L + S +SR ++ LET +G++L R R L+LT+ G + Sbjct: 102 VEIFVTIIEKGSITAAAVALGTTASVLSRALTRLETRLGVQLVRRTTRQLSLTQAGRHYY 161 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + ++Q + G +R++ L L F YP I ++L Sbjct: 162 EQACSAFSVFERAERDIQGRGAETVGHVRLSAPTTYAHYRLPALLTRFAAQYPGITVELN 221 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D+ + D AIRL + S L+ RKL + AAP YL+ EP +L+ Sbjct: 222 IANRNVDLVAEGYDLAIRL-GTLPDSRLVARKLEEAPLCLVAAPSYLRQHGEPQQRADLE 280 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245 H + F ++P W L ++P+ +QV + L ++ V G+GI Sbjct: 281 NHRCLPF--IMPSSGRVAQWSLCEEEKPVEWTPKGQIQVSDDILGVISLAVSGAGICQTY 338 Query: 246 DYIVK 250 D+I + Sbjct: 339 DFIAR 343 >gi|167033316|ref|YP_001668547.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859804|gb|ABY98211.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 306 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 8/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + GSF A QL + +S+++S LET +GI+L R R L T++G + Sbjct: 10 DELATLLALHEQGSFAAAGRQLERHPTVLSKRLSSLETRLGIRLVERSTRQLRFTDEGQR 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + + E E + G+LR+A +G+ L G L +F+L YP + ++ Sbjct: 70 LVAKVREASRLIAEAEQEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVTVE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +D+ + D AIR+ + + + L+ KL A+P YL P ++ Sbjct: 130 AEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGVPAEPEQ 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +HN + F L + ++ L + + L+ N ++++ G GI Sbjct: 189 LPEHNCLGFSGL--RSFPEWR-LKSGAHQVNVKVTGSLRSNDNEALLEAARRGVGILAGG 245 Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+++ ++ NLVR++ + + +Y P A NT L AF+ ++ Sbjct: 246 DWLMGEDLASGNLVRVLPQWQLDVAAGIYLVRPTARLNTAALGAFKAWL 294 >gi|188494226|ref|ZP_03001496.1| transcriptional regulator, LysR family [Escherichia coli 53638] gi|188489425|gb|EDU64528.1| transcriptional regulator, LysR family [Escherichia coli 53638] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL +P I+++L Sbjct: 67 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|134295520|ref|YP_001119255.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138677|gb|ABO54420.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 313 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIGRYRQRYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+P Y+ +P + +L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRELPDSGLVSQRLGDSYSVICASPDYVGAHGKPQTPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 +H + G + P D W T+ P G+ + +VN ++ G GI Sbjct: 186 AQHACL--GMVAPGFHFD-EW--TLAGPRGDELVPVTAPPFRVNVAEALAVAVREGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + +VR++ + + ++Y YP K++ + +F+ Sbjct: 241 GLPLYSAIGGLRSGQIVRLLPEYRSQPMSIYALYPSRQYLDAKIRTWVDFL 291 >gi|157376347|ref|YP_001474947.1| putative transcriptional regulator protein [Shewanella sediminis HAW-EB3] gi|157318721|gb|ABV37819.1| putative transcriptional regulator protein [Shewanella sediminis HAW-EB3] Length = 296 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 13/275 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +V + GSFT AA L L ++++SR+I LE + +LF+R R L LT+ G Sbjct: 4 EDLKLFTIVVKLGSFTAAATALDLPRANVSRRIGELEKSLNAQLFFRTTRQLRLTQHGEA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V E + +L + KP GK+++ + LQ L F YPDI++ Sbjct: 64 YYHELLTVLEGFEQAKNKLHDIDDKPVGKVKVGFLPE-SDEALQPILARFQEQYPDIELD 122 Query: 126 LILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N + DI D AI + I S I R+L+++ YA+P Y++ P ++ Sbjct: 123 LRFTNNYVTDIYSQGLDFAIHGGR-ILDSGFIARRLLSLGRCMYASPEYIEKNGMPKTLD 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIAL 243 EL +H I + P D W D ++S ++++ ++ ++G GI Sbjct: 182 ELREHQCICY--RWPDGTLDDCW----DLLTETIKVSGRFSSNHMGFVRRAIIGGQGIGF 235 Query: 244 LPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPE 275 LP + ++ LVRI+ + + V+ YP+ Sbjct: 236 LPPLFAFNAIESEGLVRILPQYQSKTEDVWLIYPD 270 >gi|255292733|dbj|BAH89839.1| LysR family transcriptional regulator [uncultured bacterium] Length = 308 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 12/302 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ +++RVF VA F AA +L ++++ +R +S LE E+G +L R R ++ T Sbjct: 1 MTGRIERIRVFVKVAELNGFAAAARELGVTRTIATRYVSELEDELGAQLLVRTTRKVSTT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + L+ + + SG+L ++ + GQ L L F YP Sbjct: 61 VAGRLYLERMQTLLADLDRADELINQQHATLSGELCLSAPVSFGQRFLPRVLAGFRESYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ +++ L ++ IDI + D A+R+ P + S I RK++ I +P YL+ Sbjct: 121 EVLLKIHLTDRFIDIIEEGFDMALRISGPPEDVSTIWRKIMPIRRSIVVSPGYLRTAPPL 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCV 236 ++L H ++ + P +W T R GE R + + + NS I+ + Sbjct: 181 EQPEDLSGHAILGYSHF-PGGQ---SWKLTHCR-TGEVRSATVRHGFESNSGELIVASAL 235 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+++LPD++V+D L RI+ D P YP K++AF FI + Sbjct: 236 GNGGVSMLPDFLVRDELAAGTLRRILTDWTPPEIWPTAFYPPYEMLPAKVEAFTGFIEEQ 295 Query: 294 AR 295 R Sbjct: 296 VR 297 >gi|255597253|ref|XP_002536731.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] gi|223518733|gb|EEF25651.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] Length = 279 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 1/185 (0%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A GS+T AA L +S S++S+ I LE G++LF R R LTLT +G L Sbjct: 14 AFARAASLGSYTAAARSLAVSPSAVSKSIQRLEQHFGLRLFSRTTRSLTLTPEGRDLLER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 T + + E + + + +PSG L++ + +G ++L L F YP + I + L Sbjct: 74 TQRLLREAENIEQGVAAARAEPSGMLKVTAPLPVGVHVLAPALPTFRRRYPKLTIDVRLS 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR+ P + LI R+L + A+A+P YL +P +L H Sbjct: 134 DRYVDLIEEGVDAAIRVGNP-GDTRLIARQLAPHRICAFASPAYLAARGKPQHPSDLLNH 192 Query: 190 NLITF 194 + + F Sbjct: 193 DCVNF 197 >gi|332142658|ref|YP_004428396.1| transcriptional regulatory protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552680|gb|AEA99398.1| transcriptional regulatory protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 289 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 138/284 (48%), Gaps = 9/284 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F +AR+G AA+ + + +++ R++ LE + KLF +G LT G++L Sbjct: 1 MRLFLGLARNGRVAIAAKGMKVDPTTLIRRVKKLEDSLNCKLFELTKKGYVLTTHGTELV 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H Q EL + +G +R++ + G L L +F YP I I+L+ Sbjct: 61 TYIEKAEHYFLEAQNELGDERSHLAGTIRVSVSEGFGSWFLAPLLPDFKKRYPGISIELV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++++ AD AI L KP L+ +KL +++ Y +K R+P ++Q+L Sbjct: 121 ATSGFLNLNKREADMAILLEKP-SRGLLVTQKLTDYNLYLYTHRSLIKE-RKPETLQDLT 178 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +NL+++ DL+ F + ++S L+ S + Q + G+G+ +LP Sbjct: 179 SYNLVSYVPDLVYAPQLKFIEETALS------QLSALRSTSINAQYQMLINGAGVGILPK 232 Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + P LVR++E+ I T + + + + + F ++ Sbjct: 233 FMAETQPGLVRLIENDIHIKRTFWLATHKETHSQARFQVFTQWL 276 >gi|109897681|ref|YP_660936.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699962|gb|ABG39882.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica T6c] Length = 301 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 136/293 (46%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +AR+ + + A ++ LS + S IS LE +G++L +R R ++LTE+G Sbjct: 4 EHLKLFVRIARTCNISAAGQEQDLSPAVASAYISKLEDNLGVRLVHRTTRKVSLTEEGEA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ +ET + + + P G LR+ G+ + L EFL YPD+ + Sbjct: 64 FLPHAEEILTNIETARASVGDGEHNPKGVLRVTAPASFGRMHIVPALDEFLARYPDLSVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +D+ D AIR ++ S+L RKL A+P Y+K+ P Q+ Sbjct: 124 FRFNDSIVDLVEGGFDIAIR-DAALKDSNLFARKLAPDRRIICASPKYIKSHGAPKIPQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 +D H + L W D+ G I +++++ ++ + GSG+ Sbjct: 183 IDAHQCVNLMGLD-------TWDFETDK--GSVSIKATGRIRIDNGEAVRDAAIEGSGLV 233 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291 + + V + LV+++ED S T ++ YP + K++AF +F Sbjct: 234 MSSIWCVYQALQSGQLVQVLEDYPMVSKTAIWAVYPSNRQLAPKVRAFIDFFL 286 >gi|296388289|ref|ZP_06877764.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313108540|ref|ZP_07794541.1| putative LysR-family transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881043|gb|EFQ39637.1| putative LysR-family transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 317 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 15/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSFT AA+ L L ++ +S+++S LE +G++L R R L+LT GS Sbjct: 7 MATFVKVVDAGSFTRAADALGLPKARVSQRVSDLEKHLGVRLLNRTTRALSLTHDGSAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + L+ + P G+LR+ + I + + ++ L +F YP IQ++L Sbjct: 67 DKCQVLLQQIDELEATLRGGTATPIGRLRVDSLITIARWVIAPRLHDFQARYPRIQLRLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ++ D DC IR ++ SS+I R L I M YA+P YL + S +L Sbjct: 127 SSDRISNLLEDGIDCTIR-GGALKDSSMIARHLCDIQMGLYASPEYLASIGGVDSPDDLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGIA 242 + +++ + F W + G R +Q + + CV GSGI Sbjct: 186 QFRRLSW--FSGRERNPFMW----ELESGSERFVVQSGDGMQFDEPDVAISACVAGSGIC 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + V LV ++ + V+ YP + + +++ F N++ Sbjct: 240 PGAPFAVAGFVRAGKLVPVLPQWHFSAAPVHVIYPGSRHLSVRVRCFVNWVM 291 >gi|269961920|ref|ZP_06176276.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269968075|ref|ZP_06182112.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827321|gb|EEZ81618.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269833368|gb|EEZ87471.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 294 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 25/296 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F VA S F+ AA+QL S S +SRQ++ LE +G+ L R R ++LTE G Sbjct: 4 FEGINEFVTVAESLGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTEAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ E+ L+ +L + SG LR++ +N + L F +P++ + Sbjct: 64 AYYQQCKELVIGLQQANEQLTTQQTQLSGTLRVSAAGAFSENHVAPALMAFAKQHPNLTV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ D D AIR + + S L+ RKLV M A A+ YL P + Sbjct: 124 EINFNTSMVNFIEDGFDFAIRYGR-LSDSGLVARKLVDRPMAAAASQRYLDEHGLPTHPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L +H+ I + WL D +P+ ++ + N+ +++Q C G G+A Sbjct: 183 QLKRHSCIIANKDV--------WLFEKDGKPLDGVKVQGRWKSNNAHTVLQACAEGLGVA 234 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP D + LV I+E + + Y R+F+ L+AR Sbjct: 235 YLPKSSFNDAISSGRLVPILEPYWGSGNSSWIVYQN-----------RHFLPLRAR 279 >gi|217977800|ref|YP_002361947.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] gi|217503176|gb|ACK50585.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] Length = 298 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 121/282 (42%), Gaps = 8/282 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW R F V R GS + AA L L+Q ++ RQI+ LE +G LF R RGL T+ Sbjct: 5 DWSHYRAFVAVLREGSLSGAARALGLAQPTLGRQIAELERSLGAALFIRSPRGLVPTDAA 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + SG +R+ + +G +L L F +P Sbjct: 65 RDIAPHAEAMAAAAGAMMRLASGGTDGASGVVRVTASDIIGAEVLPALLGAFRRAHPAAT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L L N+ D+ AD A+R+ +P Q +L+ R + + + YA YL+ S+ Sbjct: 125 IELALSNRVEDLLRGDADIAVRMVRPSQ-QALVTRHIGAVSLGLYAHRRYLEGAPPLRSL 183 Query: 184 QELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L + H LI F P E L P+ L+ +S L+ + G GI Sbjct: 184 ATLARDHALIGFDRETPFLREMLTRL-----PLTRDDF-ALRADSDLAQLAAIRAGFGIG 237 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + I + +P L+ I I + ++ E L+ + +L+ Sbjct: 238 FIQHGIARRDPELIPIFPGEIGFTLEMWLALHEDLRASRRLR 279 >gi|170694500|ref|ZP_02885653.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170140634|gb|EDT08809.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 317 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 131/293 (44%), Gaps = 35/293 (11%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR GSF AA ++++SR++S LE +G++LF R +RG+ LT++G L+ T Sbjct: 27 FNLVARHGSFGEAARVAERPKATLSRRVSELEDSLGLRLFERGSRGVKLTQEGRALYERT 86 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L + + S P G+LRI+ Q + + F L YPDI++++ ++ Sbjct: 87 GALLAELADSAAAITSGSEHPRGRLRISAPALFSQIAMGKLVATFALKYPDIRLEVTTED 146 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D IR+ P SLI R + + A P + Sbjct: 147 RPVDMVEEGYDLVIRV-NPDVDESLIGRVFLRDRLVVVATPGLARP-------------- 191 Query: 191 LITFGDLIPKCMEDFNWLATVDR--------PIGEPRISCLQV---NSYLSIMQYCVLGS 239 T G +P + T DR P G+ RIS V +S + + LG Sbjct: 192 --TDGSSVPAVVR-----GTPDRIAAWDVTGPKGKSRISITPVAHLSSLVMVRDTVRLGV 244 Query: 240 GIALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G A LP +V + R+ DV P ++ YP + ++ AF + I Sbjct: 245 GAARLPLSLVSHDIAAGRLAHWGDVDGPDIPLWALYPSRRLLSPRVSAFLDHI 297 >gi|167644959|ref|YP_001682622.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167347389|gb|ABZ70124.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 292 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + SF+ AA L+L S+ + + LE +G++L R R ++ T G + Sbjct: 1 MRLFVRIVERRSFSRAALDLNLPASTATEGVKQLEARLGVRLLQRTTRHVSPTLDGEAFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + +LE + E S KP G LR+ L ++ L L FL YPDI++ L Sbjct: 61 RRCLTILGELEDAEAEF--SDAKPRGLLRVDVHGALARHFLLPGLPAFLERYPDIRLHLG 118 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S++I R++ + AAP YLK P + L Sbjct: 119 EGDRLVDLVREGVDCVLRVGD-LKDSAMIARRVGMLDEVTCAAPSYLKRRGVPATPDTLA 177 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + G + E F T+D R + P + + V + +I C LG GI + Sbjct: 178 ADGHVMIGFVSSATGEPFPLEFTIDGTLRRVTLPTVLTV-VGAETNIAAAC-LGLGIIQV 235 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y + D LV I+ D V YP+A +L+ F ++ Sbjct: 236 PRYHAQAALDAGRLVEILPDHPPSPTPVSLLYPQARHIPPRLRVFMEWL 284 >gi|83718146|ref|YP_440220.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|167616915|ref|ZP_02385546.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257140846|ref|ZP_05589108.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83651971|gb|ABC36035.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 321 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 26/312 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL +P+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLRRFPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q+ + N+ ID+ D D A+R+R +P Q+++++ R L AP L+ P Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 L +L + + + GD FN +A P G EPR L ++I Sbjct: 185 LVPDDLSRFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTI 233 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GIA LP+ + + L +M P +Y + ++AF + Sbjct: 234 REAVLDGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVD 293 Query: 289 FIF--LKARDWK 298 ++ L + D+K Sbjct: 294 YLVEKLDSADYK 305 >gi|325121643|gb|ADY81166.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 311 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 16/265 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 L F A GSF+ AA L L+ +++SR ++ LE +G++LF+R R LTLTE G Sbjct: 5 SNLESFIRSAEHGSFSAAARHLALTPAAVSRNVAQLEQNLGVRLFHRSTRNLTLTEAGEH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++++ E S P G L+I+ + G + + EF+ YP+I+++ Sbjct: 65 FFNNIRDNLNSIQSSISEFNTGSSSPKGILKISLSPGFGVEYILPLMPEFINRYPEIKLE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L NK +++ D D AI + +++R L +HM A+P +LKN P Q+ Sbjct: 125 WHLSNKQVNLITDNFDVAIGSGVKL-GLGIVKRPLSPLHMIIAASPAFLKNKVLPRHPQD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239 + + I + ++ +L P E + L +N L ++ Q LG Sbjct: 184 ISGWDGIIMRSPQTGKLHEYKFLG----PNSEQ--AYLNLNEKLVADDPSALHQGAALGM 237 Query: 240 GIALLPDYIVKD---NPNLVRIMED 261 GIA + K N L+RI+ D Sbjct: 238 GIAAISTAHAKSYIANGTLIRILPD 262 >gi|293604354|ref|ZP_06686761.1| glycine cleavage system transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292817231|gb|EFF76305.1| glycine cleavage system transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 308 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 23/297 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKL 66 L+ F V AR SFT AA++L ++Q ++S+Q+ LE VG++LF R +GL LTE G S L Sbjct: 11 LQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAGRSYL 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +V + + ++E +EL + G L + G L L F+ L PDI ++ Sbjct: 71 TKVQAGL-GQIEAATVELIAHQGQ-GGTLNLTCMPTFGARWLIPRLTAFMRLRPDIHVEF 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLK-NCREPL 181 + + D S D A+R + I S ++ R++V + +P + C P Sbjct: 129 LPHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGREIVPV-----CSPRLIPGGCPSP- 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + L + L+ + + F R + + + Y + Q G G+ Sbjct: 183 --EALLAYPLLHHTSALEGWRDWFEQAGCDSR----RSLEGARFDQYALLSQAAAAGFGV 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 AL+P +++D + L M+ I Y CYPE N L+AFR ++ +R Sbjct: 237 ALIPRCLIEDELRDGKLAVAMQLPIRARMGYYLCYPEQKANLPTLQAFRAWLMEVSR 293 >gi|293413523|ref|ZP_06656172.1| LysR-like transcriptional regulator [Escherichia coli B185] gi|291433581|gb|EFF06554.1| LysR-like transcriptional regulator [Escherichia coli B185] Length = 294 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 21/282 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V + GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNELYLFMQVVQEGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ T+ + L+ L PSG +RI + L L F YPDI+ Sbjct: 66 EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235 +L H I F D + W D RP G+ +S +SY+ + Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKISHRPEGQWALS----DSYME-AEAA 235 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LG G+A +P +V D+ L+R+++ ++ YP Sbjct: 236 RLGLGLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277 >gi|114766362|ref|ZP_01445344.1| Transcriptional regulator, LysR family protein [Pelagibaca bermudensis HTCC2601] gi|114541395|gb|EAU44442.1| Transcriptional regulator, LysR family protein [Roseovarius sp. HTCC2601] Length = 298 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 133/288 (46%), Gaps = 11/288 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +WD LR+F VAR S + A L + +++ R+I LE +G LF + +G LT Sbjct: 1 MRGNWDDLRIFLAVARGDSLSGAGRVLRMDPATVGRRIGRLEETLGQPLFAKSPQGYALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G++L E L ++ + SG++RI LL E P Sbjct: 61 EAGARLLSHAEEAEQALGQGAEAVRGAGEGMSGQIRIGAPDGCANFLLPQVCAEIGAQNP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D++IQ++ + +++S AD AI + P + L+ +KL +H A+ YL Sbjct: 121 DLEIQIVALPRIVNLSRREADIAIGVSAPT-AGRLVVQKLADYKLHLAASETYLAEHPPI 179 Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 S +L +H ++ + IP + ++ ++LA +G R+ L NS + Sbjct: 180 RSRADLREHRVVGY---IPDMIFDKELDYLAD----LGVDRVR-LASNSVSVQFHWLRQH 231 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +G+ ++ D+ + P L +++ + + + + Y E + G+L AF Sbjct: 232 AGLGIVHDFALPAAPGLRKVLAEEVEITRSFYLVRHEDDRRLGRLNAF 279 >gi|310765468|gb|ADP10418.1| Transcriptional regulator, LysR family [Erwinia sp. Ejp617] Length = 302 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 7/255 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V + S+T AA+ L L++SS+S++IS LE +G KL R R + +TE G + Sbjct: 12 IFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVGMTYYHY 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + H++++ + +++ +PSG LR+ + G + L F+ + + L L Sbjct: 72 CYRILHEVKSADLFIRQFHEEPSGSLRVVAPVTFGCQCIVPVLNRFIASNIHVSVDLDLT 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ ++ D+ D AI + + + R L+ I YAAP YL N S +L +H Sbjct: 132 DRPVNFEDDHIDLAIAITRDLPEHR-NYRPLMDIAWGLYAAPDYLINRTAVTSPDDLARH 190 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I F P + + E R S + N+ ++++ V +GIA LP YI Sbjct: 191 ECILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAKTGIAYLPSYIA 247 Query: 250 K---DNPNLVRIMED 261 + DN LV+++ D Sbjct: 248 REAVDNGKLVQLLPD 262 >gi|167839327|ref|ZP_02466011.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 336 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|149187248|ref|ZP_01865546.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] gi|148838784|gb|EDL55723.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] Length = 300 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 15/290 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +A + + + A ++L LS + S IS LE+ +G++L +R R ++LTE+G Sbjct: 4 EHLKLFVRLAATHNISQAGQELGLSPAVASSYISKLESALGVRLVHRTTRKVSLTEEGVA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EV +E + + + PSG LR++ G+ L ++ F+ +P ++I Sbjct: 64 FLPHAEEVLESIEIARASVGAGNRLPSGVLRVSAPASFGRMHLIPAMQAFMDAHPGLKID 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ID+ D AIR ++ S+L+ RKL + A+P YL +P + Sbjct: 124 CRLSDSIIDLVEGGFDVAIR-NAALKDSTLVARKLTSDTRIVCASPSYLIKHGKPTHPTD 182 Query: 186 LDKHNLITFGDLIPKCMEDF-NW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +HN + C+ F NW T D P+ + ++ ++ C G GI + Sbjct: 183 LLEHNFV--------CLTGFENWTFETPDGPVSVKPKGEFKADNGEAVRDACAHGLGITV 234 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289 + + L+ I+ED S T ++ YP + K++AF +F Sbjct: 235 SSAWCCYEYLERGELIPILEDYPLISETAIWAVYPSSRLLAPKVRAFIDF 284 >gi|294789434|ref|ZP_06754671.1| transcriptional regulator, LysR family [Simonsiella muelleri ATCC 29453] gi|294482647|gb|EFG30337.1| transcriptional regulator, LysR family [Simonsiella muelleri ATCC 29453] Length = 293 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V +SGSFT AAE L +S S+ ++ LE + +L YR+ R L LTEQG + Sbjct: 7 MKVFCQVVQSGSFTRAAELLGISIPMASKHVAHLEKTIQSQLLYRNNRHLKLTEQGEIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R L + + +VKPSG LR++ + ++ + E+ YPD+++ L Sbjct: 67 RECVMALDILRQAENVVSAGTVKPSGILRVSLPLWFSCDIFANLIAEYRQQYPDVELILS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D++ D D A+RL + ++I + L I + A+P Y+ P ++L Sbjct: 127 LTNRRVDLNTDGEDLALRLSHQL-PDNVIAKFLTRIPFYLVASPDYVARYGLPEHHEDLL 185 Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 KH I ++ DL + + + + + P L+ N+ I G G+ +P Sbjct: 186 KHEAILPSYTDL-SQLVAQYQ-----QQTVPLPMKGTLRSNNTQMIAALIRSGVGLGYMP 239 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 ++ L+ I+ D +Y Y + ++F +F A WK Sbjct: 240 AWLADVDLQAGRLIHILPDYQIEGVPLYVVYANRAFMNARTRSFIDFF---AEKWK 292 >gi|167578829|ref|ZP_02371703.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 328 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 27/298 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE G Sbjct: 16 NDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQL 75 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + + +Q+ P G +R++ + L Q +L L EFL +P++++Q Sbjct: 76 FYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLRRFPEVRVQ 135 Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + N+ ID+ D D A+R+R +P Q+++++ R L AP L+ PL Sbjct: 136 IRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQNAPPLVPD 195 Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235 +L + + + GD FN +A P G EPR L ++I + Sbjct: 196 DLSRFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTIREAV 244 Query: 236 VLGSGIALLPDYIVKDNPNLVRIME-DVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + N +R + + P +T V Y + G A R F+ Sbjct: 245 LDGVGIAALPESMYG---NALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFV 299 >gi|167562725|ref|ZP_02355641.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 306 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + H Sbjct: 11 LHVFISVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYH 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +Q + + + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERFDAGIRLADRLQPGMVGVKIAPALACALVATPGYLAQHGTPAKVADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|90411757|ref|ZP_01219766.1| Hypothetical transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90327319|gb|EAS43683.1| Hypothetical transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 288 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V + GSF+ A ++ + I + I LE +G KL R R +LTE G + Sbjct: 1 MQAFVSVVQHGSFSGATADCSVTPTMIGKHIKFLEVHLGTKLLNRTTRKQSLTEAGQIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + LQ KP G +RI + + G +L + +FL YP+I I Sbjct: 61 LECKRILDDIAEAENSLQTLENKPKGTVRINSPVTFGNIVLAPIVADFLQDYPEINIDFT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID D D IR+ + + +SSLI R++ M A+ +YL C P S+ EL Sbjct: 121 LDNSLIDPLHDPFDLVIRIGE-LANSSLIAREIARYEMVFCASANYLSECGTPTSLDELL 179 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H + F GD+ + N +D + + + L NS ++ + G+GI L P Sbjct: 180 RHQCLGFSYGDV------NANLALRLDTLAFDKQHTRLISNSGQALKVAALKGAGILLQP 233 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYP-EALKNTGKLKAFRNFIF 291 ++ D + LV I+ V+ Y +AL K +AF +F+ Sbjct: 234 RLLLNDELSSGQLVEILSSDTPKPMPVHLLYKHKALPL--KTRAFVDFLL 281 >gi|83717101|ref|YP_439840.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650926|gb|ABC34990.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 354 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 24 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 83 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 84 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 143 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 144 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 203 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 204 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 258 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 259 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 304 >gi|330816651|ref|YP_004360356.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327369044|gb|AEA60400.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 313 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFMRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ +GQ+ + YP++Q+ L Sbjct: 66 LQRCEQILAYVDQAEAEASDAHARPSGKLKVHCMTSMGQHYTVPLAARYRQRYPEVQVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D +I L + + S L+ ++L A+ YL+ P +L Sbjct: 126 TLAQRLPDLLDEGFDVSIVLGRELPDSGLVSQRLGETFSVVCASRDYLERHGVPRRPSDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 D H + G + P D W T+ P G +S VN ++ G G+ Sbjct: 186 DAHTCM--GMVAPGFQWD-EW--TLLGPDGNETLSVASPPFSVNVAEALAVAIREGMGVG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y N + VR+M + + +Y YP K++ + +F+ Sbjct: 241 VLPLYTAITGLRNGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFM 291 >gi|238561104|ref|ZP_00442413.2| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|254204050|ref|ZP_04910409.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254209026|ref|ZP_04915373.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|147744934|gb|EDK52015.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147750249|gb|EDK57319.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|238525053|gb|EEP88482.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] Length = 358 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 28 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 87 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 88 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 147 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 148 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 207 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 208 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 308 >gi|107026962|ref|YP_624473.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691841|ref|YP_837374.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896336|gb|ABF79500.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116649841|gb|ABK10481.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 303 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 128/294 (43%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F R SFT AA +LHL+QS+ISRQI LE +G LF R R L LT G + Sbjct: 12 LVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQ 125 ++V+H L T E +KP G L + G L L L F YP+I+++ Sbjct: 71 --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPNFRAAYPNIKLR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI+ + +S D + + + R+L + AP YL L + Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L L+ D + M W + VDR +P+ + +NSY I+Q +LG G++L Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFDMNDVDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 243 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 Y++ + LVR+ E + Y P + F ++F +A Sbjct: 244 GWRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQA 297 >gi|323966589|gb|EGB62022.1| LysR substrate binding domain-containing protein [Escherichia coli M863] gi|323978867|gb|EGB73947.1| LysR substrate binding domain-containing protein [Escherichia coli TW10509] gi|327251846|gb|EGE63532.1| HTH-type transcriptional activator ttdR [Escherichia coli STEC_7v] Length = 310 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +PLS+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPLSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LVR++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|218662867|ref|ZP_03518797.1| LysR family transcriptional regulator [Rhizobium etli IE4771] Length = 297 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 139/292 (47%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----IDLGQNLLQGNLKEFLLLYPD 121 +R S++ +++ ++E++ + G+LRI+ D+GQ+L+ +F P+ Sbjct: 66 YRTASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFARENPE 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + +++ D++ +D+ + D AIR+ K ++ S +I RK+ +H A P +L R P Sbjct: 121 VSLEIAADDRFVDLIEEGFDVAIRITK-LEDSGMIARKISDFRIHLCATPEFL--TRYPN 177 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 D N+ D + + + ++VNS + ++ + G GI Sbjct: 178 IEHPSDISNVPFIVDTNARSQASIRFYNPDNTSFAVAVSGPIEVNSPHATLRAALAGIGI 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A +PD+I + ++ LV + D I +Y YP K++ F +++ Sbjct: 238 AFIPDFIARKPIESGELVTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289 >gi|117618325|ref|YP_856481.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559732|gb|ABK36680.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 301 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 130/260 (50%), Gaps = 7/260 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GS T AA+ L ++ S++S+ IS LE+ +G+ L +R R L LTE G + + Sbjct: 9 IFAAVVEAGSMTGAAKALGMTPSAVSQHISQLESLLGLTLLHRSTRRLNLTEAGEVVWQG 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + L T++ L E G++RI + + L L L +P + IQ+I D Sbjct: 69 CQSLQQTLNQTELRLSEVRDSLLGEVRITAPVGMAGQPLARALSPLLQAHPGLCIQIIAD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ + D A+R+ + S+L+ RKL M A+P YL P S + L H Sbjct: 129 DEKRDLIAERIDVALRVGT-LSDSTLVARKLGQTRMLLCASPAYLARKGTPRSPEALLDH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + D++ + F+ R +PR+ C N+ L + Q+ + G G++L P+ + Sbjct: 188 DWLA-ADMLSGGLTFFDEKGQGHRVKPKPRVVC---NNVLPLRQFTLAGQGVSLQPEGEI 243 Query: 250 KDNPNLVRIMEDVITPSFTV 269 D+ R++E + P F V Sbjct: 244 ADDLASGRLLE--LLPGFRV 261 >gi|148254504|ref|YP_001239089.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406677|gb|ABQ35183.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 329 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 6/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +L F VA + SFT AA Q+ S +IS I LE + ++LF R R + LTE G Sbjct: 6 FSELSAFAAVADTLSFTKAAAQIGCSLPTISHTIKSLEERLDVRLFNRTTRSVALTEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L ++ +++ + KP G LRIA L ++ FL YPDIQ+ Sbjct: 66 RLLAEIQPIFEQVDQAIESINAFRDKPVGTLRIAVPRVFAIRGLGPLIRSFLAEYPDIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L +D+ + DI + D IR ++ + R + + A A+P YL P S + Sbjct: 126 ELAVDDTNSDIVRNRFDAGIRSGHRVERDMKVIRVVDDLQFVAVASPDYLAVHPAPSSPE 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L HN I + ++ W+ E + L VN + + + G GIA Sbjct: 186 DLGAHNCIRHRFPADETLQ--PWVFEQGEQRAEIAVDGSLIVNDFDLALNAALDGVGIAY 243 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + +V + LVR++ D + + ++ +P + L+ F +F+ Sbjct: 244 LVEPLVDAHLAEGRLVRVLPDWSSATPGLFLYHPSRRQPPMPLQVFLDFV 293 >gi|311109043|ref|YP_003981896.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310763732|gb|ADP19181.1| bacterial regulatory helix-turn-helix protein, LysR family protein 194 [Achromobacter xylosoxidans A8] Length = 355 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 141/289 (48%), Gaps = 7/289 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V + SFT AA+ L L +++++ I LE +G++L R R + LT G+ Sbjct: 4 FQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +E T+ QE++++ G+LRI +G+ +L +L +F YPD+++ Sbjct: 64 GYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPDVEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + DC IR ++ SSL+ R++ T+ A+P Y+ P +I Sbjct: 124 VLGLGDRPVDMVQEAVDCVIRAGD-LEDSSLVARRIGTLQTVTCASPTYVARHGLPQTID 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 EL H+ + + + + W VD E + + VN + + + G G+ Sbjct: 183 ELRDHHAVHY--FSSRTGRNCAWDFRVDGKHQEVEMKGVVSVNEAGAYLDCGLKGFGLIQ 240 Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+ L+ ++ + YP++ + + K++AF ++ Sbjct: 241 TARYMALPHLQTGELIEVLPQWKPSPTAISVLYPQSRQLSPKVRAFADW 289 >gi|307729369|ref|YP_003906593.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583904|gb|ADN57302.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 310 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + + V +GSF+ AA++L L Q ++S+ I+ LE +G++L +R RGLT T+ G + + Sbjct: 7 METYVCVVEAGSFSAAAKRLKLGQPAVSKSIAQLEDRLGVRLLFRSTRGLTPTDAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ + ++++S SG LRI + + + LK FL +P++QI ++ Sbjct: 67 EHARRAIEEVDLAEQVVRDASTGLSGVLRIGAAVTFARLHILPALKRFLDSHPNLQIDIV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID+ D A+R+ + S++ R++ P Y P S +L Sbjct: 127 LDDRTIDLLEKGVDVALRM-GSLDDSTMTARRIARGRRLVVGTPGYFAEAGVPKSPADLS 185 Query: 188 KHNLITF 194 +H + + Sbjct: 186 QHQAVVY 192 >gi|226194919|ref|ZP_03790510.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|225932724|gb|EEH28720.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] Length = 330 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 130/296 (43%), Gaps = 22/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 1 MRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERYL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 61 LRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIELT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 121 LSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDLA 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 +H +T L WL ++ P G I +Q N+ S+ G GI +L Sbjct: 181 RHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGML 235 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y ++ NLVR++ VY YP R FI K R W Sbjct: 236 PLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 280 >gi|15597643|ref|NP_251137.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107101898|ref|ZP_01365816.1| hypothetical protein PaerPA_01002943 [Pseudomonas aeruginosa PACS2] gi|116050394|ref|YP_790788.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891571|ref|YP_002440438.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235454|ref|ZP_04928777.1| hypothetical protein PACG_01367 [Pseudomonas aeruginosa C3719] gi|254240883|ref|ZP_04934205.1| hypothetical protein PA2G_01558 [Pseudomonas aeruginosa 2192] gi|296389140|ref|ZP_06878615.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110634|ref|ZP_07796509.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9948495|gb|AAG05835.1|AE004672_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115585615|gb|ABJ11630.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167385|gb|EAZ52896.1| hypothetical protein PACG_01367 [Pseudomonas aeruginosa C3719] gi|126194261|gb|EAZ58324.1| hypothetical protein PA2G_01558 [Pseudomonas aeruginosa 2192] gi|218771797|emb|CAW27574.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310883011|gb|EFQ41605.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 307 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 41/304 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F A +GSF+ AE+L + S++++ ++ LE E+G +LF R R L LTE G Sbjct: 5 NALAMFVATAETGSFSRGAERLGKTPSALTKAVAHLEAELGARLFERTTRSLALTEAGQI 64 Query: 66 LHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L T +IEL ES ++ G+LR+A LQ FL +P I Sbjct: 65 YLEAARQSLETLRTAGQEIELLESELR--GELRLAAPPSFAAAFLQQACASFLEAHPRIS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ LD +D+S D +R PI L+ R L + A+P YL P Sbjct: 123 LRVDLDETFLDLSEGGYDLGLR-DGPIDLPGLVARPLAPNQIVLCASPAYLARQPAPQGP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA------TVDRPIGEPRISC------LQVNSYLSI 231 ++ ++H + F P ++F W+ +D+P PR++ L Sbjct: 182 EDFERHAWLVFQH--PSLNQNFWWMERDGARQRIDQP--RPRLASDNYDFLLAHLLAGLG 237 Query: 232 MQYC-------VLGSG--IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282 +Q+C +LG G + LL DY P PS ++ YP +NT K Sbjct: 238 LQFCPQWSVAPLLGEGRLVRLLGDYHFDPGP---------FGPS--IHVLYPGHRRNTRK 286 Query: 283 LKAF 286 ++AF Sbjct: 287 VRAF 290 >gi|294677004|ref|YP_003577619.1| glycine cleavage system transcriptional activator [Rhodobacter capsulatus SB 1003] gi|294475824|gb|ADE85212.1| glycine cleavage system transcriptional activator [Rhodobacter capsulatus SB 1003] Length = 307 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 22/291 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F AR+ S T AA +L L+QS++SRQI LE ++G +LF+R + + LT+ G+ Sbjct: 14 LQAFETAARTQSITAAAAELSLTQSAVSRQIRALEAQLGTELFHRERQTIRLTQGGAAYA 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R K+ T + L+ + G L +A G L L +FL +P I + L+ Sbjct: 74 RDIRAALQKISTASLTLRANPG--GGTLTLAILPTFGTRWLAPRLPDFLAAHPGITLNLV 131 Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 D + + D AI P + + L +V AA H ++ Sbjct: 132 TRLTQFDFATEAVDAAIHFGVPDWPGAECTWLRGEHVVPACSPDLAARHGFA------TL 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIA 242 QEL L+ P E F DR P ++ + + + ++ Q ++G G+A Sbjct: 186 QELRAAPLLHLTSR-PDAWEKF-----FDRAGMAPQQLHGMLFDQFATVAQAAMVGLGVA 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP+++++D + LV + + Y C P L AFR+++ Sbjct: 240 LLPEFLIEDEIASGRLVVPLAARMRSDEAYYLCAPRGRGPHPPLAAFRDWL 290 >gi|323529961|ref|YP_004232113.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386963|gb|ADX59053.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 297 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 145/302 (48%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AA+ L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 8 NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEM 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E +I L+ + + L++ T + + + F YP++ +Q Sbjct: 68 LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQTEYPELHVQ 122 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D ++ D AI +QS L++ +L + AP LK+ +P Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGADVQSVPLLEERLTPV-----CAPDLLKD--KP 175 Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLATV-------DRPIGE---PRISCLQVNSY 228 L+ + +L +H L+ + D+ WLA V R I P L + + Sbjct: 176 LAGLGDLARHTLLH----PTRDHRDWKMWLAKVAESDPAHARAIDAEHGPSFDTLDMATN 231 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 ++ + V S +AL+ + + LVR + V+ + YF YP+++ + KL FR+ Sbjct: 232 AALQGFGVAISDLALIDEDVAAR--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLNLFRD 289 Query: 289 FI 290 +I Sbjct: 290 WI 291 >gi|260775779|ref|ZP_05884675.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260608195|gb|EEX34364.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 303 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 135/269 (50%), Gaps = 17/269 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F++VA SGSF AA+++ L +SS+S++I+ LE + ++L R R L+LT+ G + Sbjct: 8 ENLYLFHLVALSGSFQGAADKVGLPRSSVSKRIAKLEQTLNLRLLERSTRKLSLTQSGHE 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + T + L T+ ++ +P GK+RI + + LL ++ YPDI Sbjct: 68 LLKSTEPLQQVLHHTETLSEQVHARPQGKVRIGCSTLMAHRLLIPHIHALSDTYPDICFD 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ ++ D AIR+ + SSL+ R++ YA+P YL P S + Sbjct: 128 FNLTDEVVDLIDNHVDIAIRIGH-LPDSSLLARQIGEKTFGWYASPAYLAQNGAPESPES 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239 L H + F + K + NW+ P G ++ + V + ++Q LG Sbjct: 187 LLHHRCLVFKN---KAVTLDNWVFV--HPNGG--VNAINVTPAMISDDARGLVQLATLGQ 239 Query: 240 GIALL-PDYIVKD--NPNLVRIMEDVITP 265 GI ++ P +I ++ + L ++ D P Sbjct: 240 GIIMVDPAFIDQELRSNELAPVLTDYTHP 268 >gi|237728837|ref|ZP_04559318.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226909459|gb|EEH95377.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 299 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 5/293 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L L + S+SRQI LE +G +L +R R + LT+ G + Sbjct: 7 MQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQDGMIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ SGKLR+ + + +NL+ L FL YP ++++L Sbjct: 67 ERAKDLLSNLDELDGLFHHDPSSISGKLRVDMPVGVARNLVMPRLPSFLHQYPGLELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + A+P YL P ++++L Sbjct: 127 SSDRLVDLIREGFDCVVRV-GTLKDSGLIARPLGKLTQINCASPQYLARFGYPENLEDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + + F +AT + L VNS + C+ G GI +P Sbjct: 186 SHAVVHYSVNLGTRAQGFE-VATENGTQWVKTGGMLTVNSTETYHAACLAGLGIIQVPRV 244 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 V+D LV ++ V YP + ++ F ++ +D+ Sbjct: 245 GVRDALRAGTLVEVLPQYRAEPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKDY 297 >gi|167569906|ref|ZP_02362780.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 306 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + H Sbjct: 11 LHVFISVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYH 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +Q + + + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERFDAGIRLADRLQPGMVGVKIAPALACALVATPGYLAQHGTPAKVADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074209|gb|ADJ63608.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 11/274 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q+ L+ + +SR ++ LE + +L R R + LTE G + Sbjct: 7 NMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTEAGERY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + VKPSG+LRI GQ + ++ + YPD+ ++L Sbjct: 67 LLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDVAVEL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ L + + S LI R+L + A+P YL P +L Sbjct: 127 TLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQQPADL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243 H + I E W+ ++ P G + S QVN +++ G GI + Sbjct: 187 LNHACLQLVSPISPLDE---WI--LEGPEGGTVVAVKSNFQVNVAEAMLTAIREGMGIGV 241 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LP Y D +VR++ + VY YP Sbjct: 242 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYP 275 >gi|330816606|ref|YP_004360311.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327368999|gb|AEA60355.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 314 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 124/277 (44%), Gaps = 18/277 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L V VAR SF A+ +L +S +++S ++GLE + ++LF R R + LT+ G + Sbjct: 8 ELEVVLAVARLASFRAASRELGMSTTAVSAAVAGLEARLKVRLFNRSTRSVALTDAGQRY 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E PSG LR+ + L+Q L E+L YP +++ + Sbjct: 68 VERVAPALAEIRRADEEAGTGPDVPSGTLRLNAPPETATMLVQPLLAEYLRRYPQVRVDV 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D + IDI D D IRL + + + I M A P YL P EL Sbjct: 128 VSDLRLIDIVADGFDAGIRLAESVPQDMIAVPLTDEIRMRVVATPGYLARHGTPREPAEL 187 Query: 187 DKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSG 240 H LI+ G I ++W ++R G+ +S L + S I Q + G G Sbjct: 188 VDHQLISMRLGRGI------YHW--ELER-AGQKFVSNLPMRLVFSDSRAIRQATLAGLG 238 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 + L D+ V ++ LV +++D P + YP Sbjct: 239 LGFLSDWFVSEDLARGALVPVLDDWCQPFGGLRLYYP 275 >gi|260599340|ref|YP_003211911.1| hypothetical protein CTU_35480 [Cronobacter turicensis z3032] gi|260218517|emb|CBA33711.1| hypothetical protein CTU_35480 [Cronobacter turicensis z3032] Length = 302 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A GSF AAE L +S +++ ++ LE +G L R R L++ G Sbjct: 8 MTVFVKAAELGSFAAAAEALGMSPQMVAKHVAWLEARLGATLLNRTTRRQNLSDIGRSYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E QE PSG LR+ + G L + +L YP+ I+L Sbjct: 68 ERCKVVLDEAEAADRVAQEMKGTPSGTLRVNAPVTFGATALAPFITRYLRQYPETHIELT 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D + IR+ + + SS+I + L + A A+P YL P + +L+ Sbjct: 128 LSDAIVDPLEAGYEVIIRIGE-LNDSSMIAKPLRPYKLIACASPVYLAREGIPQTPSDLE 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H + +G I W D E R+ + N + +++ V G G+ L P Sbjct: 187 RHACLVYG--IWSSTHPCRWRFEKDGKTEEARVQGRFRANDWKALLHAAVEGYGVTLGPA 244 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++ + LV+I+ D PS ++ P + T K+++F Sbjct: 245 DVLRAEMEAGRLVQILPDYTGPSRPMHVLVPPGRRQTVKIRSF 287 >gi|163854767|ref|YP_001629065.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258495|emb|CAP40794.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 305 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F VA+ +F+HAAE L++ S++SR++S LE +G+KL R R + LT Sbjct: 1 MDIQLNDIALFVEVAKRKNFSHAAEALNMPASTLSRRVSELEQNIGMKLLNRSTRRIELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + +L + + +P G+LR++ L Q L ++EF +P Sbjct: 61 EAGLVYFERCRPIVEEARVAHDQLLDMAAQPKGRLRVSMPSSLAQLFLPAVIREFRTQHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 DI+ L+ + ID + D +R R+P SSL+ R+++ + YA+P YL+ Sbjct: 121 DIECDFDLNMQHIDPISNPFDLVLRFGRQP--DSSLVARQIMLMKHRLYASPQYLERHGV 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 P +L H L P E F+ W+ + +S L N+ + + Sbjct: 179 PRVPSDLGHHEC-----LRPAMSEAFSYWVLHSGEKVERVAVSGRLAANNVGILSRLASQ 233 Query: 238 GSGIA--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA L+ D I + N LV ++ D ++ P + K +AF +FI Sbjct: 234 GLGIAPLLVFDAIGQPIRNRGLVPVLPDWSLTPIPLFALMP-SRTIPAKTRAFLDFI 289 >gi|156935761|ref|YP_001439677.1| putative DNA-binding transcriptional regulator [Cronobacter sakazakii ATCC BAA-894] gi|156534015|gb|ABU78841.1| hypothetical protein ESA_03631 [Cronobacter sakazakii ATCC BAA-894] Length = 308 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 4/247 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVELGSFTSAARQLEMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L E L YP + + L+ Sbjct: 61 QGCRRMLHEVQEVHEQLYAFNNSPIGTLRIGCSSTMAQNVLASLTAEMLRDYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL ++L ++ M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSKRLGSMPMVVCAAKSYLAQAGTPEKPADLA 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + E R + + R N +++ ++ G+GIA +P Sbjct: 180 NHSWLEYSVRPDNEFELIAPEGISTRLLPQGR---FVTNDPMTLSRWLKAGAGIAYVPLM 236 Query: 248 IVKDNPN 254 V D N Sbjct: 237 WVIDEIN 243 >gi|170721659|ref|YP_001749347.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169759662|gb|ACA72978.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 299 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + F+ AA +L ++ SS++R + LE+ +G L R R +TLTE G++ + Sbjct: 7 MRMFAATVDAQGFSAAARKLGVATSSVTRLVDALESALGATLLNRSTRQVTLTEAGARYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E++ L+ + + +P G LR+ ++ G+ ++ +L +FL + +++ + Sbjct: 67 ARAREIFEALDKADASVADRGEEPVGVLRLCLPVEFGRRVIAPHLGQFLARHRALELDID 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS--IQE 185 + ++ D+ D +IRL P S L+ R+L A+P YL C EPL Q Sbjct: 127 MSDRVDDLLGGRYDLSIRLGDPAPSEELVCRQLGRFERWLVASPDYLAGC-EPLQHPGQL 185 Query: 186 LDKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243 LD L ++G ++ W + + E + ++ +++ L GSGIAL Sbjct: 186 LDHACLRFSYGPMVRP------WRLRLGDEVLELDVRGPLRSANADLLREAALAGSGIAL 239 Query: 244 LPDYIVKDN 252 L D++V+++ Sbjct: 240 LADWLVRED 248 >gi|330819601|ref|YP_004348463.1| putative transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327371596|gb|AEA62951.1| putative transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 91/191 (47%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ L F VAR SFT AA QL +SQS++S I GLET +G++L R R + TE G Sbjct: 5 NFSDLLAFLAVARERSFTKAASQLGVSQSALSHTIRGLETRLGVRLLTRTTRSVATTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L +V + ++E+ L E KP G +RI T + +L LK L YP ++ Sbjct: 65 ERLMQVAGPRFDEIESELNALSELRDKPVGLIRITATDHPVETILWPRLKPLLADYPGLK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I++ +D DI D +R + + + R + M +P Y P S Sbjct: 125 IEMSIDYNLSDIVAQRYDIGVRFGDQVANDMIAVRIGPDVRMMIAGSPEYFARHPAPKSP 184 Query: 184 QELDKHNLITF 194 Q+L H I Sbjct: 185 QDLLDHACINL 195 >gi|327189544|gb|EGE56697.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 141/292 (48%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121 +R S++ +++ ++E++ + G+LRI+ D+GQ+L+ +F PD Sbjct: 66 YRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFAAENPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + +++ D++ +D+ + D AIR+ K ++ S +I RK+ +H A P +++ R P Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKVSDFRVHLCATPDFIE--RHPD 177 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 D N+ D + + + ++VNS + ++ + G GI Sbjct: 178 LEHPSDISNVPFIVDTNSRTQGSIRFYNPDNTTFAVAVSGPIEVNSPHATLRAALAGIGI 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL+PD+I + ++ L+ + D I +Y YP K++ F +++ Sbjct: 238 ALIPDFIARKPIESGELLTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289 >gi|296532072|ref|ZP_06894847.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296267597|gb|EFH13447.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 314 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 10/264 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D L F V SGS T AA +L L++S +S++++ LE ++ +L R R + T Sbjct: 1 MRPDVDALATFLQVVDSGSVTAAAARLGLAKSVVSKRVAQLEAQLSTQLLNRARRHVAPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ L + +L+T E+ S K SG+LR+A + G L + F+ YP Sbjct: 61 EAGALLAERARALLAQLDTVADEVMARSGKLSGQLRLAAPLSFGTRHLGPLIAGFMRDYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ L LD++ +D+ D +R+ + + S+L R+L +P Y P Sbjct: 121 EIEVVLDLDDRHVDLQAGAYDLGLRIGR-LADSALRARRLGLSRRVLCCSPDYAARHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236 S++ L H+ + + + + F V G PR L+ NS ++++ Sbjct: 180 RSLEALAAHSCLGYANAAAGHLWRF-----VPGDGGAPRSLVLRGRLTANSGEALLEAAC 234 Query: 237 LGSGIALLPDYIVKDNPNLVRIME 260 G G+ +LP +++ R++E Sbjct: 235 AGIGLVVLPRFLMAAPLREGRLVE 258 >gi|307730208|ref|YP_003907432.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584743|gb|ADN58141.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 312 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 86/318 (27%), Positives = 141/318 (44%), Gaps = 34/318 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+VF V SGS T AAE+L + S +SR ++ LE ++ L R R L LT Sbjct: 1 MKTSTDELQVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + +E + + +PSG+LR+ + + ++ F LYP Sbjct: 61 EEGEGFLQRARAILDAMEEAEESVTLKRRRPSGRLRVDAASPFMLHCIAPHMTAFSELYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L + + +D+ D AIR+ +Q S+L R L + A+P YL EP Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRI-GALQDSTLHARALGRSKLRVVASPAYLAAHGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W----LATVDRPIGEPRISC------------- 222 ++ L H LI F E N W R GE S Sbjct: 180 KTVDALRGHRLIGF-----TAPEHLNRWPLRERGGHKRTNGERSSSAAGRKPEPWKIEPS 234 Query: 223 LQVNSYLSIMQYCVLGSGIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + +S ++ Q + G GIA L D++ ++D P L + D P VY+ + Sbjct: 235 ITASSGETLRQLALAGWGIACLADFMTAADIRDGRLVPILGGALLDERQPVSAVYY---Q 291 Query: 276 ALKNTGKLKAFRNFIFLK 293 + G+++ F +FI + Sbjct: 292 SASLAGRVQCFLDFIAAR 309 >gi|227328769|ref|ZP_03832793.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 301 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 20/285 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++ L F VAR GSFT AA QL ++Q ++S+ I+GLE + I+L R R ++ T Sbjct: 1 MKRNFNDLLSFVTVAREGSFTRAAAQLGVTQPALSQAITGLENRMQIRLLTRTTRSVSPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + + ++E L E KP+G +RI ++ + L L L YP Sbjct: 61 AAGERLLQAIGNRFDEIEAELDNLTEFRDKPAGTVRITCGPNVLRTTLLPKLLPLLREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++ ++ +I D D +RL + I + + M A A+P Y P Sbjct: 121 DIKLEFDANHGFRNIVADRFDAGVRLGEAIDKDMIAVPIGQPLRMAAVASPDYFAKHPIP 180 Query: 181 LSIQELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIM 232 + EL +H ++T G L ++ D+ G+ + L N+ I+ Sbjct: 181 NTPHELTQHQCINQRMVTSGGL---------YVWDFDQDGGDLNVRVDGQLTFNTSEHIV 231 Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + + G GIA LP+ + L+R++E P Y YP Sbjct: 232 EAALAGFGIAFLPEEEFSPHIEEGRLIRVLEPWCAPFSGYYLYYP 276 >gi|206563637|ref|YP_002234400.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198039677|emb|CAR55646.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 303 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 19/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE + I+L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + +++ P G +R+ N + L +F YPD+++ + Sbjct: 67 ERCVRLLADLDDAETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPDLRVAIS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S +L Sbjct: 127 TTDRFVDLVADGIDCAVRV-GALSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDDLP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D GE S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGEMHTVKMHSVVSVNSSQAYLACCLAGLGLIQ 242 Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P D + + +LV ++ + V +P TG+ A R IF+ DW Sbjct: 243 APRDGLAPLLADGSLVEVLPEWRAGPLPVSVVFP-----TGRHLAPRVRIFV---DW 291 >gi|34495597|ref|NP_899812.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34101452|gb|AAQ57821.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 294 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 131/283 (46%), Gaps = 10/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +AR GS A QL LS S++ + ++ LE +G +L +R R L LT +G + Sbjct: 7 IELFAQIARQGSLVAAGRQLGLSASAVGKGLARLEQRLGARLVHRSTRRLALTAEGQQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + E + ELQ+ PSG+L++ + G LL +L +F+ YP + + L Sbjct: 67 ARCLRILEEAEAAERELQQGLAAPSGRLKVGVPHESG--LLTPHLADFMRRYPQVALDLD 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D +R +P S L R+L + M A+P YL P + ++L Sbjct: 125 YSDRLVDVIGEGFDVVVRGGEP-GDSRLAARRLGSYRMRLLASPGYLAEYGRPQTARDLQ 183 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + +P + W L + P +S N+ ++++ G GI LPD Sbjct: 184 RHRCLHY--RLPHSGKLLPWPLVGAEGEDASPPVSA-SCNTGEALIELAARGMGIVCLPD 240 Query: 247 YIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAF 286 + V+ + + S +Y +P +L+AF Sbjct: 241 FSVRRELAAGALALLDAPQVARSGNMYLLWPAMPAMPPRLRAF 283 >gi|134293273|ref|YP_001117009.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136430|gb|ABO57544.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 312 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 14/277 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + +F V SGSFT AA Q++ S + ISR ++ LE ++G++L R R + +TE G Sbjct: 6 FAAIGIFVRVVESGSFTAAARQVNGSTAQISRAVAFLERQLGVRLLNRTTRHIGMTESGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + +E E + KP GKLR+ LG L + ++ + PD++I Sbjct: 66 RYFKRAKSILADIEHASAEARNRLAKPYGKLRVHAMPSLGLRYLTSAMVQYQVSNPDVKI 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L + ++ D D ++ + +SS + + L + A+P Y++ P ++ Sbjct: 126 ELTLSERFPNLIEDGIDVSLMATADLPTSSYVSKALGGNYSVLVASPDYVQRSGMPSTVT 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVL-GS 239 +L H+ +T P + W + P GE + S QVN M++ +L G+ Sbjct: 186 DLAAHSCLTLN--APNSAPE-KW--RLHGPDGEHAHLVQASPFQVN-MPDAMRFALLAGA 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 GI L + D+ LVR++ + + TVY Y Sbjct: 240 GIGPLTLHSAIDDLRRGTLVRVLPEYRVNALTVYALY 276 >gi|167565055|ref|ZP_02357971.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 323 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 139/302 (46%), Gaps = 27/302 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q+ + N+ ID+ D D A+R+R +P Q+++++ R L AP L+ P Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPGLLQQNAPP 184 Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 + +L + + + GD FN +A P G EPR L ++I Sbjct: 185 IVPADLSRFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTI 233 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GIA LP+ + + L +M P +Y + + G A R Sbjct: 234 REAVLDGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRA 290 Query: 289 FI 290 F+ Sbjct: 291 FV 292 >gi|116695723|ref|YP_841299.1| transcriptional regulator [Ralstonia eutropha H16] gi|113530222|emb|CAJ96569.1| transcriptional regulator [Ralstonia eutropha H16] Length = 339 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 16/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ ++SR + LE +G++LF R R + LT++G Sbjct: 49 IELFCLAAELGSFTAAAVAAGVTPPAVSRTVQRLEERLGVRLFVRTTRQIRLTDEGRVYF 108 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ P+G+LRI+ + L F YP+++I + Sbjct: 109 EQSRGALAQLVDAERQISGQQAAPAGRLRISLPTPYAHYRVLPVLPAFRERYPEVEIDVH 168 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D + D D ++R R P S+LI RKL + A P YL+ P S+++L Sbjct: 169 ISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVATPGYLRRAGTPQSLEDLL 227 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVL---GSGI 241 +H I F P W V+ GE + SY + I+ L G+G+ Sbjct: 228 RHECIQFER--PSSGRRIPWTFRVN---GED-TDIVTAGSYAASEDILGGATLVRAGAGL 281 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++V+ + LV +++D + YP A + +++AF +F+ K Sbjct: 282 FQTYRFVVEQDLRDGTLVEVLKDYGGSTRPFVLLYPSARHVSRRVRAFVDFLVEK 336 >gi|17549476|ref|NP_522816.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431729|emb|CAD18408.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 329 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V GSF+ AA L + +S +SR+++ LE +G++L R R + +T+ G Sbjct: 16 DLNDLVLFAAVVTHGSFSAAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 75 Query: 64 SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 S + EV + +E+ E + +PSG+LR++ + + L L +FLL P++ Sbjct: 76 SAFY-AQCEVMTQAARAALEVAEHAGERPSGRLRVSCPVGVAHAFLAPVLSKFLLAQPEV 134 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L + N+ +D+ + D A+R+R + S+L+ R V ++ A+P ++ S Sbjct: 135 RLELDVTNRRVDVIGEGYDVALRVRSTLDDSNLVVRTFVASNLVLAASPSFVAGHGPFDS 194 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + L + E W ATVD + + + Q + Sbjct: 195 AESLRGVAGVG---FGGVGGERARWRLTSPEGATVDIEY----VPAFVTDDLFLLGQVAM 247 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A LP + D + LV ++ D P ++ +P G + A R FI Sbjct: 248 AGVGVAQLPVNLCADAIRDGRLVMLLPDHRQPVHQLHAVFP---SRRGLVPAVRAFI 301 >gi|327190353|gb|EGE57451.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 309 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 15/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F VA SFT AA +L ++QS++S + LE +G++L R R + TE G Sbjct: 16 NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 75 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L KP+G +RI + ++++ L L YPDI+ Sbjct: 76 ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 135 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +DN +I D D +RL + ++ + R + A+P Y K P + Sbjct: 136 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFKTRPVPTTP 195 Query: 184 QELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL +HN I G L E N V R G+ L N+ ++ + G Sbjct: 196 QELMQHNCINRRLDRIGGLYAWEFEKNNEEVRV-RVEGQ-----LTFNTDREMVGAALQG 249 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 GIA +P+ V + L +++D TP F Y+ Y Sbjct: 250 YGIAFVPESYVATHLVERRLTLVLDD-WTPKFAGYYLY 286 >gi|317405053|gb|EFV85401.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 299 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 5/242 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A G F A L LS S++ + ++ LE ++ ++LF R R + LTE+G + Sbjct: 10 FVRSAELGGFAAAGRDLDLSPSAVGKAVARLEQDLHVRLFQRSTRRMQLTEEGRLFYERC 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + L+ L ++ +P G+LR++ + + + L L F YP I++ + ++ Sbjct: 70 KRILEDLDDAHAMLSQTLREPRGRLRVSAPL-VSYHFLLPVLPAFAARYPHIELDMDFND 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D AIR + S L R L + + YAAP YL P ++L++H Sbjct: 129 RIVDLIGERVDVAIR-SGDLPDSRLAARTLGSFRLRLYAAPDYLARHGTPQRARDLERHR 187 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + F P W + PR+ + N+ +++ + G GI +PD++ Sbjct: 188 AVRF--RYPNAGTLQEWPLALAAGEAAPRLTAAFTCNNMEALLGATIQGFGIGCMPDFLA 245 Query: 250 KD 251 ++ Sbjct: 246 RE 247 >gi|260775979|ref|ZP_05884875.1| putative transcriptional regulator LYSR-type [Vibrio coralliilyticus ATCC BAA-450] gi|260608395|gb|EEX34564.1| putative transcriptional regulator LYSR-type [Vibrio coralliilyticus ATCC BAA-450] Length = 306 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 8/287 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F +A+ A+ L L ++++R++ LE+E+G +L +R AR LT +G Sbjct: 3 DDMALFVHIAQLRGLKSASAALALPAATVTRRLKKLESELGCQLIHRSARQFRLTAEGHA 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + LE T+ + + +G L + ++ LQ EFL YPD+ + Sbjct: 63 YYAAFAPLVADLEKTRDRMSQQVASLAGPLTVLAPTNIALGFLQPLWSEFLSAYPDVVLD 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+N + D+ + AD A+R+ P S L Q L I A+P YL ++ + Sbjct: 123 LKLNNDNKDVVQEQADIALRI-GPQPDSGLYQVGLGAIPTLLVASPAYLAKAPPLTALTD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L++H IT L M+ T I PR LQV+ + G GIALLP Sbjct: 182 LNQHRCITVSHLPVWPMQRVGLDQT--EVIRLPR--GLQVDDIRMACLWAQDGLGIALLP 237 Query: 246 DYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 V ++ LV + + + PS VY +P K +AF+ F Sbjct: 238 ATEVLSSLESETLVTPLSEWVGPSRDVYLIWPSGQLMGAKAQAFKRF 284 >gi|209516326|ref|ZP_03265183.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209503262|gb|EEA03261.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 37/303 (12%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AA L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 8 NALQIFETVARHRSFTRAANHLCLTQGAVSRQIIALEEYYKFPLFKRHAKGLTLTAEGEM 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E ++ L+ + + L++ T + + + F YPD+ +Q Sbjct: 68 LLPAVKESFARIE--EMSLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQSEYPDLHVQ 122 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D + D AI +Q+ SL + +L + P LK+ +P Sbjct: 123 ITTTWQHDVDFQSEPFDAAIIYGSSPGADVQAVSLFEERLTPV-----CTPELLKD--KP 175 Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLA-----------TVDRPIGEPRISCLQVNS 227 L+ + +L +H L+ + D+ WLA T+D +G P L + + Sbjct: 176 LAQVADLTRHTLLH----PTRDHRDWKMWLAKAAETDAAGAATIDAELG-PSFDTLDMAT 230 Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + + V S +AL+ + + LVR + V+ + YF YP+++ KL FR Sbjct: 231 NAAAQGFGVAISDLALIDEDVAAR--RLVRPFDTVLKTGWRYYFVYPDSVAQQQKLNLFR 288 Query: 288 NFI 290 ++I Sbjct: 289 DWI 291 >gi|167616442|ref|ZP_02385074.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257142991|ref|ZP_05591253.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 336 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|71733730|ref|YP_273003.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554283|gb|AAZ33494.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 310 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+VF V SGS + AAE++ + S +SR +S LE ++ L R R + LT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++E+ + L S P+G+LRI + + ++ EF YP Sbjct: 61 EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++L D+ ID+ D AIR+ + S+L R L + ++ A+P YL+ P Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRI-GVLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + ++L +H L+ F + E N W A DR +P IS S +++ V Sbjct: 180 KTAEDLAQHVLVGFTHV-----ESLNQWPLRHAEGDRLSIKPVISA----SSGDTLRHLV 230 Query: 237 L-GSGIALLPDYIVKDN 252 L G GIA L D++ D+ Sbjct: 231 LEGVGIACLSDFMTNDD 247 >gi|332306024|ref|YP_004433875.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173353|gb|AEE22607.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 301 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 14/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +++F VA + + + A + LS + S +S LE +G++L +R R ++LT++G Sbjct: 5 DYVKLFIRVAATHNISKAGAEFGLSSAVASAHLSKLEESLGVRLIHRTTRKVSLTDEGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V + + K GKLRI + L L EF+ ++PD+ ++ Sbjct: 65 FLPHARDVLVSADIA-VSSVRGGAKTRGKLRITAPVSFSHIHLIPALNEFMEIFPDLSVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +DI D AIR ++ S+LI RKL + A+P YLK P + + Sbjct: 124 LRLSDTIVDIVEGGFDVAIR-NAELKDSALIARKLAIDNRIICASPDYLKKHGRPTTPEA 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +HN I + + NWL + + + ++ ++ C+ G GI + Sbjct: 183 LQQHNCINL-------LGNDNWLFKTSKGLLNIKTRGAFTTDNGKAVCDACLNGMGIVMC 235 Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 +I ++ LV+I+ED + +++ YP + K++AF ++ Sbjct: 236 STWIAYEHLRAGTLVQILEDYPLEADASIWAVYPSSKLVAPKVRAFIDY 284 >gi|332305796|ref|YP_004433647.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173125|gb|AEE22379.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 305 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 145/288 (50%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +VF +VA+ SF+ AA+ L+L S++SRQI+ LE +G++L R R + LT++GS Sbjct: 7 FKVFQLVAQEQSFSRAADSLNLVPSAVSRQINELEHWLGVRLLNRTTRTVHLTKEGSDYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 TS++ ++ + + + GKL+I+ + LGQ+LL + F +P++++ L Sbjct: 67 AKTSQIIELVDALKFKKNDHK-NIEGKLKISAPMMLGQHLLPQIVAGFKRDFPNVKLSLF 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +D+ + D A+R+ + S+L+ RKL + A+ YL + P +L Sbjct: 126 LLNRKVDLIEEGFDLALRVSH-LADSNLVARKLGNLSFATVASSDYLASNGTPQVPTDLQ 184 Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H+ LI + N W ++ +++ + N L+++ G G+A LP Sbjct: 185 QHSC-----LINSAVSSANRWGYKINGRGKNVKVAGDIDANESLALLSLAKQGQGVAFLP 239 Query: 246 D-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + Y+ K+ N LV ++ + + Y + LK F +++ Sbjct: 240 EVYVQKELANGTLVEVLREFRPEPLPINLLYVSNRLVSPVLKTFIDYV 287 >gi|107026392|ref|YP_623903.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692419|ref|YP_837952.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|254248467|ref|ZP_04941787.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|105895766|gb|ABF78930.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116650419|gb|ABK11059.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|124874968|gb|EAY64958.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 315 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + +PD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQFPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+K P Q+L Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPARPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H +T L W+ ++ P G +I +Q N+ S+ G GI + Sbjct: 186 AAHACLT---LCTPAFPTHEWV--LEGPDGVEQIHVAGPVQTNTAESLALAIRDGIGIGM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D + LVR++ I VY YP R F+ K R W Sbjct: 241 LPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|53721781|ref|YP_110766.1| LysR family regulatory protein [Burkholderia pseudomallei K96243] gi|167741983|ref|ZP_02414757.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167819166|ref|ZP_02450846.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167827541|ref|ZP_02459012.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|254192876|ref|ZP_04899311.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254300071|ref|ZP_04967517.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|52212195|emb|CAH38215.1| LysR family regulatory protein [Burkholderia pseudomallei K96243] gi|157810406|gb|EDO87576.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|169649630|gb|EDS82323.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] Length = 336 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|90579567|ref|ZP_01235376.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio angustum S14] gi|90439141|gb|EAS64323.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio angustum S14] Length = 273 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 130/262 (49%), Gaps = 8/262 (3%) Query: 29 LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88 +++S +S++IS LETE+G++L YR R LTLTE G L+ + + + ++ S Sbjct: 1 MTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGEVLYHRAKSISYVAQAAFDSVKGYS 60 Query: 89 VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148 SGK+R++ G+ +L + +F +P + + + L+N +D+ D D IR Sbjct: 61 EALSGKIRMSVPTISGELVLAKAVSDFCQKHPGLSVDMSLNNHFVDLVADNYDLVIRTGY 120 Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208 ++ SSLI R + A+P Y+++ +P ++L+ HN + + P+ F+W Sbjct: 121 -LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPKDLNCHNCLGYN---PQSTGPFDWQ 176 Query: 209 ATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT 264 I ++S ++ +++ + + G+GIA LP+ +V D LV ++ Sbjct: 177 FIKQNKIYTQKVSGNFSSDNAIALKKNVLAGNGIAYLPNCLVHDELERGELVELLSTHAG 236 Query: 265 PSFTVYFCYPEALKNTGKLKAF 286 +Y YP K +++A Sbjct: 237 KVVGIYAVYPYTRKPAKRIQAL 258 >gi|332715799|ref|YP_004443265.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325062484|gb|ADY66174.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 296 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 9/287 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA +F A + L LS S++ + ++ LE +G++LF R R ++LT +G+ L Sbjct: 6 EIDAFVRVAERLNFAKAGQSLGLSPSAVGKSVARLEASLGVRLFNRTTRQVSLTSEGAML 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + L + ++ P G LR+ T +G L + EF YPDI ++L Sbjct: 66 FERYRSILTDLRDAHEAVTDNLALPRGSLRV-TLPTIGYRFLLPIVPEFRRRYPDIDLEL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +D+ D AIR + + SSLI R+L A+P Y + P +L Sbjct: 125 DFNDRRVDLIEGGFDAAIRSGE-LDDSSLIARRLGPFRFILCASPDYFQRMGTPRHPSQL 183 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H + F P W L D P+ RI+ L + +I + G G+A +P Sbjct: 184 PEHEALRF--RFPTSGRFQEWLLENGDNPLSSMRIA-LTCGNMEAIRAAAIDGMGLAYMP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +++ D + L ++ + + +P A +L+AF +F Sbjct: 241 EFLATDAIRDGLLETVLNEHLAAPGQFSIVWPSARFMAPRLRAFIDF 287 >gi|323965229|gb|EGB60687.1| LysR substrate binding domain-containing protein [Escherichia coli M863] gi|327254591|gb|EGE66207.1| putative transcriptional regulator [Escherichia coli STEC_7v] Length = 294 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 21/282 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L + V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNELYLLMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ T+ + L+ L PSG +RI + L L F YPDI+ Sbjct: 66 EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + + R + M P + + P + Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235 +L H I F D + W D RP G+ +S +SY+ + Sbjct: 186 TDLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHRPEGQWALS----DSYME-AEAA 235 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LG G+A +P +V D+ L+R+++ ++ YP Sbjct: 236 RLGLGLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277 >gi|308188530|ref|YP_003932661.1| hypothetical protein Pvag_3063 [Pantoea vagans C9-1] gi|308059040|gb|ADO11212.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea vagans C9-1] Length = 322 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 42/308 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F + SGS + AA QL +Q ++SR++ LE +G+KL R L LT+ G + Sbjct: 11 DLMQTFIRIVESGSLSAAAAQLGTTQPTVSRRLQTLEQRLGLKLILRTTHALKLTDDGER 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + EL +S P G LR+ GQ+ L L ++L YP + I+ Sbjct: 71 CYAQARQLLATWHALEDELTGASDDPVGTLRVRAPHAFGQDQLIAPLVDYLHRYPRLNIE 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +L+++ D + DCAI++ P S++ L + AAPH L + P I+ Sbjct: 131 WMLNDRTPDFMAENVDCAIQVGAPT-DPSVVAILLAEVPRIVVAAPHLL--AQHP-PIER 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD--------------RPIG---EPRISCLQVNSY 228 + + + D WLA +P+ PR+S +S Sbjct: 187 VAQ-------------LRDLPWLALTSFYRNEVALQKIDDGQPVNLAITPRLSS---DSL 230 Query: 229 LSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 ++ + + G G A++ + V++ + +LV++M P V+ YP A +L+ Sbjct: 231 YAVRKAALAGMGAAIVSSWAVQEDLADGSLVQLMPAWQAPPLPVWLTYPWASYYPARLQH 290 Query: 286 FRNFIFLK 293 F F +K Sbjct: 291 F--FAMIK 296 >gi|190895534|ref|YP_001985826.1| transcriptional regulator LysR family [Rhizobium etli CIAT 652] gi|190699479|gb|ACE93563.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 317 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 12/301 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA QL S +++SR+I LE + +KLF R+ RG LT Sbjct: 7 FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ + + E + +L + S+ G +R++ L F +P + Sbjct: 67 GTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFCATVLHRFAARHPHL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + + +S AD ++ L +P + KL H+ Y + YL Sbjct: 127 ALELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAEKLTDYHLQIYGSRDYLAKAPAITC 185 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 +L +H +++ ++I ++L+ V PRI Q +S + + G G Sbjct: 186 RDDLLEHPFVSYIEEMI--FAPGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298 + +LP + P LVR++ I + LK +++A +F+ ++ D + Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRQYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298 Query: 299 F 299 F Sbjct: 299 F 299 >gi|145632891|ref|ZP_01788624.1| DNA topoisomerase I [Haemophilus influenzae 3655] gi|145634327|ref|ZP_01790037.1| DNA topoisomerase I [Haemophilus influenzae PittAA] gi|229844177|ref|ZP_04464318.1| putative HTH-type transcriptional regulator [Haemophilus influenzae 6P18H1] gi|144986547|gb|EDJ93113.1| DNA topoisomerase I [Haemophilus influenzae 3655] gi|145268307|gb|EDK08301.1| DNA topoisomerase I [Haemophilus influenzae PittAA] gi|229813171|gb|EEP48859.1| putative HTH-type transcriptional regulator [Haemophilus influenzae 6P18H1] Length = 305 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSESYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|126443473|ref|YP_001062110.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|167578304|ref|ZP_02371178.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] gi|167723002|ref|ZP_02406238.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167897612|ref|ZP_02485014.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167914278|ref|ZP_02501369.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167922186|ref|ZP_02509277.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|254183174|ref|ZP_04889766.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254189797|ref|ZP_04896306.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254262850|ref|ZP_04953715.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|126222964|gb|ABN86469.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|157937474|gb|EDO93144.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|184213707|gb|EDU10750.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254213852|gb|EET03237.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 336 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|53717282|ref|YP_105356.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|124381629|ref|YP_001024686.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126445948|ref|YP_001079021.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|254355695|ref|ZP_04971975.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52423252|gb|AAU46822.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|124289649|gb|ABM98918.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126238802|gb|ABO01914.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|148023788|gb|EDK82850.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] Length = 336 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|289662529|ref|ZP_06484110.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669761|ref|ZP_06490836.1| LysR family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 298 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 11/291 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AAE L S +S++RQ++ LE +G +L R R ++LT GS Sbjct: 5 DAMRVFTAVAERSGFSAAAEALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + +++P+G LR+ + G L L F YP +++ Sbjct: 65 YYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P + LI R+L + M A+P YL P Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRMLPCASPAYLARAGTPQHPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 +L H + + P E + D + R+ L+ N+ + + G GI + Sbjct: 183 DLAGHECLLY-HYSPSGDEVRFQGSQGDIDV---RLHGGLRANNGHVLNAAALAGQGIVM 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 PD++ + + LVRI+ + ++ Y K+++F +++ Sbjct: 239 QPDFLAEPHLAAGRLVRILPEYTLAEIGIFAVYTSRSHLAPKVRSFIDYLI 289 >gi|330818048|ref|YP_004361753.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327370441|gb|AEA61797.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 334 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 23/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK- 65 +R+F VA + SFT AA L+ + +SR I+ LE + +L R R L LTE G + Sbjct: 7 NMRIFVCVANANSFTAAARLLNTTIPQVSRAIAALEAHLHTRLLNRTTRRLALTEAGERY 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 LHR S + L+ + E ++++V PSG LR+ + LGQ+ L ++ YPD+ + Sbjct: 67 LHRCRS-ILGYLDEAEAEARDANVNPSGCLRVHCAVSLGQHYLVPAFAKYRQRYPDVLLD 125 Query: 126 LILD-------NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 + L ++ D+S+ D + SS LI +L A+ YL Sbjct: 126 MTLSQRAPALVDEGFDVSVVVGD------DELPSSGLIGVRLGETFGVLCASRDYLDRHG 179 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPR-ISCLQVNSYLSIMQYCV 236 P I ++ +H + + P E W L D P R S +VNS+ ++ Sbjct: 180 SPRRIADMARHACVAYEAPAPGRSE---WDLVGPDGPEHVARAASSFRVNSHEAMAVAIR 236 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI +LP + + + VR+M +PS ++ Y K++ + +F+ Sbjct: 237 EGMGIGVLPVHAAIGGLLSGDFVRVMPQCRSPSGVIWALYSSRQYVDAKIRTWLDFL 293 >gi|293407138|ref|ZP_06651062.1| LysR family transcriptional regulator YhjC [Escherichia coli FVEC1412] gi|298382888|ref|ZP_06992483.1| LysR family transcriptional regulator YhjC [Escherichia coli FVEC1302] gi|291425949|gb|EFE98983.1| LysR family transcriptional regulator YhjC [Escherichia coli FVEC1412] gi|298276724|gb|EFI18242.1| LysR family transcriptional regulator YhjC [Escherichia coli FVEC1302] Length = 299 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + + A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 290 >gi|119472999|ref|ZP_01614834.1| Transcriptional regulator, LysR family protein [Alteromonadales bacterium TW-7] gi|119444619|gb|EAW25930.1| Transcriptional regulator, LysR family protein [Alteromonadales bacterium TW-7] Length = 305 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 120/276 (43%), Gaps = 17/276 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F V GSFT AA L LS + ISR ++ LE + +L R R + LT++G Sbjct: 19 WDGIDEFIAVGEEGSFTAAARILGLSVAHISRHVTALEQRLNTQLLTRTTRKVVLTKEGE 78 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + H ++ L P GK+++ + G+ + + F+ +PD+++ Sbjct: 79 IFLHQIKHLQHAMDDATQGLASHQTTPKGKIKLTAPVMFGETFIMPIVHNFMHDHPDVEV 138 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ D+ D AIRL ++ SSL R+L A+P YL+ EP ++ Sbjct: 139 IANLSNEQEDLLEGGFDLAIRLGH-LKDSSLKARRLSDRRFIMCASPAYLRRFGEPHTLG 197 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241 EL H +C+ + V+ E I L NS +++ G GI Sbjct: 198 ELHNH----------QCLVGNSSYWRVNENEREKHIKIAGRLHCNSGWALVDGAKKGLGI 247 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274 LPDY + + N LV ++ V+ YP Sbjct: 248 VQLPDYYIDNELNSGELVPVLTSYQPKQEGVWGVYP 283 >gi|157373088|ref|YP_001481077.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157324852|gb|ABV43949.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 337 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 141/306 (46%), Gaps = 32/306 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++F +V GS + AA L S+ ++SR +S LE+ ++L R R +TLTE GS Sbjct: 5 DAFKIFAMVGDRGSISGAARALGESKVTVSRAVSRLESLYNVRLVERTTRRITLTEVGSV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI- 124 LH + ++E E+ P+G LRI T D+ + LL NL EFL YP+I + Sbjct: 65 LHARCIRIREEMEDADAEIATYRSSPAGILRIGCTSDVAKTLLTPNLPEFLANYPEIDVR 124 Query: 125 -----QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +L+ ++ +D+ + C + S L RK+ + A+ Y++ Sbjct: 125 VRVGERLLPESNILDVVL---HCGW-----LSDSRLTARKIAEVKNILVASREYVQANGI 176 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLS-----I 231 P S +L+ H +I L +E A V R G+ R + +LS I Sbjct: 177 PTSPDDLEDHAIIGNFYLDAAAIEPGPLPAYVPRLEISRGQERFTLPTYRRFLSTDHSQI 236 Query: 232 MQYCVLG------SGIALLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLK 284 ++ G +GI LP + + LVRI+ D I+ S +Y Y + L + KLK Sbjct: 237 LELVKHGRVIAPITGIWALPGLLSGE---LVRILPDYEISESPQLYALYLDRLASIPKLK 293 Query: 285 AFRNFI 290 F +FI Sbjct: 294 VFLDFI 299 >gi|49085314|gb|AAT51268.1| PA0876 [synthetic construct] Length = 315 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 25/299 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA++L L+ + +SR ++ LE + +L +R R + LTE G + Sbjct: 6 NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +PSG L++ +GQ+ L + ++ YP++ L Sbjct: 66 LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N+ DI D ++ + + S + + + + A+P Y+ P EL Sbjct: 126 TLANRITDILDGGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPKLPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241 H + L+ M WL D P G+ ++C+ QVN+ ++ + V G GI Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y + + +LVR++ VY YP R ++ K R W Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPS-----------RQYLDAKIRTW 287 >gi|134293628|ref|YP_001117364.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136785|gb|ABO57899.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 311 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 8/294 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT A L + +ISR +S LE + +L R R L +T+ G + + Sbjct: 7 MSVFVKVVEMGSFTAVANHLDTTVGNISRAVSVLEDNLNTRLLQRSTRRLVVTDAGRRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E + E +++ ++P G LR+ LG+ L+ + + YP++ + L+ Sbjct: 67 ERSVAILSDIERAEAEARDALLEPRGLLRVHAVPGLGRQLVSQAVLAYRSAYPEVSVDLM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AI + + + S+ + +K+ T H A+P YL P +++L Sbjct: 127 LSQRMPNLLEEQLDVAIVIARTLPDSAYVSQKIGTSHCILAASPDYLARHPAPECVEDLV 186 Query: 188 KHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H L++ D P ++++ + P S VN ++ G+GI L+ Sbjct: 187 GHTCVLLSTVDYAP---DEWHLQGRAGEAVYRPTGSHFSVNDMDAMSTVLREGAGIGLIA 243 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + D+ +LVR++ + T VY Y K+K F + + ++ D Sbjct: 244 AFSAIDDLRKGSLVRVLPEFHTAQRNVYAVYSSRQFVDAKIKRFIDVLKVQVGD 297 >gi|326793670|ref|YP_004311490.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544434|gb|ADZ89654.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 304 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 138/291 (47%), Gaps = 22/291 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR+G+ + A +L+L+ S+++++++ LE+ +G++L R R ++LT +G Sbjct: 10 FISLARNGALSATARELNLTPSAVTKRLTNLESRLGVRLVNRTTRKVSLTNEGEVYLEYI 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E + + + P G LR+ + G+ + L EFL P ++IQL+L + Sbjct: 70 KNIKEQIEEMEAVITKRRSTPRGLLRVNAPLGFGRTYIAPILSEFLSENPAVEIQLMLTD 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + + + D D IR + S +I RK+ AAP YLK +P S +L +HN Sbjct: 130 RPMTLPDDSIDVCIRFGQ-APDSRVIARKIAPNRRLVCAAPSYLKRYPKPNSPADLAEHN 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGIAL- 243 I ++ +A+ R + ++V + + +++ + G G+ + Sbjct: 189 CI--------IIKQNQQVASAWRFYKNGKEEVIKVKANMVTNDGEIALRWAIDGHGLVMR 240 Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L YI + +V +ED TP +Y Y E + KL F +++ Sbjct: 241 AEWDLAKYIRQGKLEIV--LEDYETPEADIYAVYMERQNQSAKLTRFLDYL 289 >gi|297516999|ref|ZP_06935385.1| putative DNA-binding transcriptional regulator [Escherichia coli OP50] Length = 260 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITF 194 H ++ + Sbjct: 210 SHAIVRY 216 >gi|238023436|ref|YP_002907669.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] gi|237880489|gb|ACR32818.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 6/244 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +W+ LRVF V+ R+GS + L + ++ SR+IS LE ++G LF R G L QG Sbjct: 7 NWNHLRVFLVLGRTGSLSQTGRLLGIDHATASRRISALEHDMGTPLFERDPTGYRLNAQG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + V + +L + PSG +RIAT + L P I Sbjct: 67 RSIFEHIESVEASVLAAASQLAGGEIAPSGTVRIATMEGIASLYLSEQFVRLKRTTPGIV 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L+ ++D+ ++ AD + KP +L K+ H Y + Y P S+ Sbjct: 127 IELVTSSRDVRVTHREADIFLGFFKP-PGKNLHAVKIGEFSCHLYGSQDYFARRGTPTSV 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL +H + D + + ++ WL + + P S +S LS M G+G+ + Sbjct: 186 AELPEHEFAGYIDELIQ-LDIVRWL---EEGVANPTYS-FHSSSMLSQMFAAAAGAGLVM 240 Query: 244 LPDY 247 LP + Sbjct: 241 LPAF 244 >gi|224823543|ref|ZP_03696652.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224603998|gb|EEG10172.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 298 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 15/297 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V +GS T AAEQL + S +SR +S LE ++ L R R L LT Sbjct: 1 MKSTTEELLAFVRVVDAGSITAAAEQLGQTTSGVSRALSRLEGKLATTLLNRTTRRLELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++ + ++ +PSG+LR+ + + + F YP Sbjct: 61 EEGRLFLSHARGILGAIDEAEEQMAIRRERPSGRLRVNAASPFMLHAVVPLVGAFRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L ++ ID+ D AIR+ +Q SSL R L + AAP YL+ P Sbjct: 121 EIELELNTSDEIIDLLEQRTDVAIRI-GTLQDSSLHARPLGQFRLRLVAAPAYLERHGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + EL +H LI F P + W G L +S ++ Q + G G Sbjct: 180 QQVDELARHALIGFS--APSSLN--TWPLRRQESSGYVITPALSASSGETVRQLALAGQG 235 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSF-TVYFCYPEALKNTG---KLKAFRNFI 290 IA L D++ ++ LV+++ + ++ ++ Y +NTG ++ F +F+ Sbjct: 236 IACLSDFMTGEDRRRGALVQVLAEATIETWQAIHAVY---YRNTGLAARIGCFLDFL 289 >gi|50956505|gb|AAT90754.1| putative lysR-family transcriptional regulatory protein [Yersinia enterocolitica] Length = 303 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LETE+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|295676185|ref|YP_003604709.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436028|gb|ADG15198.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 305 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 11/259 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +G+F+ AA QL + S++SRQI LE +G +L R R + LT+ G++++ Sbjct: 13 MAMFARVVDAGNFSIAARQLGSTPSTVSRQIKRLEDSLGTRLLERSTRSIRLTDSGAQIY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++ + P GK+ I+ I ++++ + EFL +PD+ + L+ Sbjct: 73 RFCRDMVGAASGAVDVAGQGEGDPRGKVSISAPISFARSVIHPLVPEFLRRWPDVDVHLV 132 Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+D D IRL R P L R+L + A+P YL P ++L Sbjct: 133 FADHDVDPLRHDVDLVIRLTRSP--PPGLAARRLGAVKWLLCASPAYLAERGTPAEPRDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245 +H + G+ + +D W D + + N + + + G GIA LP Sbjct: 191 ARHACMYLGETV----DDNRWHFRRDSETQTVEVKGRYIANDASARLDAALHGLGIASLP 246 Query: 246 DYIVK---DNPNLVRIMED 261 D++ ++VR++ D Sbjct: 247 DFVAAQAISAGDIVRVLTD 265 >gi|264678709|ref|YP_003278616.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262209222|gb|ACY33320.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 313 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 23/294 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR SFT AA ++ ++++++S+ + GLE + ++L R R ++LTE+G +L V Sbjct: 14 FAHIARHRSFTKAAAEMEVTRAALSQHLKGLEQHLNVRLLNRTTRDMSLTEEGQRLLDVL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +E E+ E+ +P+G +R+ ++ + L++ ++ EFL YP ++++L++D+ Sbjct: 74 QPALTAIERAVAEIGEAHAEPTGLIRMNSSRVAARLLIEPHMGEFLARYPKLRLELVMDD 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I + D IRL + + + + M +P Y + P + +L KHN Sbjct: 134 GFSNIVAEGLDAGIRLGESLDEHMVAVPITPPLEMAIVGSPEYFERYGMPETPADLMKHN 193 Query: 191 LITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQ------VNSYLSIMQYCVLGS 239 + + F T+DR P E R + N S++ + G Sbjct: 194 CLAY---------RFTSSGTIDRWSFTSPDEEKRTVVFEPQGNAVFNDDDSMLHGALQGV 244 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ D V+ + +LVR++ P Y P + K +A +F+ Sbjct: 245 GLVQHIDLCVRRHLADGSLVRVLAAWCPPFPGFYLYVPSRSQMPAKTRALMDFL 298 >gi|167567323|ref|ZP_02360239.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 294 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 17/290 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR G+ + AA +L + +++ R+++ LETE+ ++L R R TLT Sbjct: 2 FDWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQVRLVERFPRHCTLTGA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + S + + +Q + +G + ++ L N F YP I Sbjct: 62 GRRIFEIASTMESGAFAIERAVQAERSQLTGTVVVSAPPVLVTNFFAAATTAFRERYPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L + + +S AD A+RL +P ++ +++ R++ + YAA Y P Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEAGNVV-RRIGAMEFALYAARCY------PY- 173 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +QE + I + D M WL V G+ + C ++ S G+GI Sbjct: 174 LQEPARWEFIGYDDQFDD-MPQQRWLKKV---AGKRPVVC-RLGDITSQFAATRAGAGIG 228 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290 +LP ++ + +LV + DV F ++ LK ++A +FI Sbjct: 229 MLPRFLPSASDDLVEL--DVDAEPFVRDIWLVVHRQLKAAPPIRAVMDFI 276 >gi|254250523|ref|ZP_04943842.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124879657|gb|EAY67013.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 330 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 18/247 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F AR SFT A ++L+++QS++SRQ+ LE ++ I+LF+RH R LTLT++G + Sbjct: 17 DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ S LE+ +L S + S + ++TT+ L L F YPDI ++ Sbjct: 77 LYDAISFALSDLESVVGKLSSSVGQRS--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++ D+ A+R P S+ L + ++V + +P + + Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDDTDVLFRERVVAV-----CSPSLMTAAGDAA 189 Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 S+Q +LDKH L+ D P+ ++ + + + +G PR+ L + Y ++Q V Sbjct: 190 SMQPADLDKHVLLHLDD--PRGEWPWHGWSHLLKALGVPRLRPAGALHFSQYDQLVQAAV 247 Query: 237 LGSGIAL 243 G GIA+ Sbjct: 248 DGHGIAI 254 >gi|254250527|ref|ZP_04943846.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124879661|gb|EAY67017.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 307 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 16/264 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L +F V R+GSF+ AA +L + +++SR+I E +G +L +R R L + + Sbjct: 2 LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L + ++ +IE Q + +PSG +R+A L + + L EF YP Sbjct: 62 GLALFERYAPALDRI--FEIERQHADGQEPSGTVRVAAMAGLFEVIKLEWLAEFYARYPR 119 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I +LD+ D+ + D A+R+ S + R++ M A+P YL+ P Sbjct: 120 ISIDFLLDDTPSDLIAERIDLALRIGIETGGSFRV-RRIAPDTMILAASPAYLERRGTPR 178 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 + +EL H+ +T + M W + P G IS VN ++Q C+ G Sbjct: 179 TPRELADHDCLTVSSRQGRSM----W--RLQGPRGTQEISIDGRFSVNDMRVVVQACLAG 232 Query: 239 SGIALLPDYIVK---DNPNLVRIM 259 GIAL+P + D L R++ Sbjct: 233 LGIALVPQVLAAAAIDEGKLARVL 256 >gi|317494709|ref|ZP_07953121.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917311|gb|EFV38658.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 310 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F V GSF+ A ++ SSISRQ+ +E + +L YRH R +T TE G L Sbjct: 12 LRLFVAVIDYGSFSAVARNEGIAPSSISRQMQQMEQALNQQLLYRHTRAVTATESGRLLA 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +LE + LQE ++P+G +RI + G+ + + E +P + ++L+ Sbjct: 72 TYARRVLEQLEEAEQALQEKKLEPAGLVRINAPVVFGRLHIAPYIPELCHKHPKLCVELV 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ID D +D R+ + S+L R L + A+P YL+ P S +EL+ Sbjct: 132 QTDNFIDPMQDASDLLFRI-GILSDSNLQGRVLAQQNYRIAASPEYLRRFGVPSSPEELE 190 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + F F ++ + L N+ S++ + G GI + P + Sbjct: 191 HHNCLVFKGFAGAQRWFFQ---CKNQWVPYNLHGSLTGNNADSLLDAAIQGLGIVVFPTW 247 Query: 248 IVKD---NPNLVRIME 260 ++ D + LV +ME Sbjct: 248 LLGDALKDGRLVSLME 263 >gi|170697513|ref|ZP_02888603.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170137536|gb|EDT05774.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 291 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 12/269 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AA+ L + S++SR+IS LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVKARGFRSAAQTLGMPNSTLSRRISALEKAIGLRLLHRTTRRIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L +P+G LR + +D L + EF YP + Sbjct: 65 YFERCKRIVDEARLAHEQLGGLLAEPAGVLRASFPVDFAVTYLAPLIVEFANRYPKLTFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D AIR+ P + S L+ R+L T+ + YA+P YL EP ++ Sbjct: 125 FELTSRRVDLVSEPFDVAIRI-GPSEDSQLVARRLATLRNYLYASPGYLARAGEPREPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H + + +W L R + S VNS + + L +GI +L Sbjct: 184 LARHACLGL-------QKSGSWTLHDGTRSVAVAVSSRFAVNSVGMLRRLATLDAGIIVL 236 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVY 270 + I+ D+ L R+M + VY Sbjct: 237 SEEILADDVAAGRLRRVMPEWEGEPIPVY 265 >gi|78061343|ref|YP_371251.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969228|gb|ABB10607.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 291 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 12/269 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AAE L + S++SR+I LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVKAKGFRSAAETLGMPNSTLSRRIGALEKAIGLRLLHRTTRRIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L +P+G LR + +D +L L EF +P + Sbjct: 65 YFERCKRIVDEARLAHEQLGGLLAEPTGVLRASFPVDFAVVILAPLLVEFANRHPKLSFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D AIR+ P + S LI R++ T+ + YA+P YL EP ++ Sbjct: 125 YELTSRRVDLVSEPFDVAIRM-GPSEDSQLIARRIATLRNYLYASPGYLARAGEPQQPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + +W L R + P S NS + + L +GI +L Sbjct: 184 LATHACLGL-------QRSGSWTLHDGTRSVAVPVSSRFGANSVGMLRRLATLDAGIIVL 236 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVY 270 + IV D+ L R+M + VY Sbjct: 237 SEAIVADDLAAGRLRRVMPEWEGEPIPVY 265 >gi|161616662|ref|YP_001590627.1| hypothetical protein SPAB_04479 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194448392|ref|YP_002047636.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265402|ref|ZP_03165476.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205357602|ref|ZP_02571927.2| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359036|ref|ZP_02666698.2| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|161366026|gb|ABX69794.1| hypothetical protein SPAB_04479 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406696|gb|ACF66915.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197243657|gb|EDY26277.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205330685|gb|EDZ17449.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338714|gb|EDZ25478.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|321226658|gb|EFX51708.1| LysR family transcriptional regulator YhjC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 300 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275 >gi|116250635|ref|YP_766473.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255283|emb|CAK06358.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 283 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 19/247 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W L++F +AR G+ AA L L+Q ++ R++ LET +G LF R G LT++ Sbjct: 1 MEWSDLKLFLAIARFGTLGAAARSLGLTQPTMGRRLRALETSLGQMLFQRTTDGFVLTDE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + + + L S + G LR++++ G ++L L EF ++P + Sbjct: 61 GAAVFAGAERIEEEALAVERVLAGGSRQLDGFLRLSSSDWFGAHVLSPVLAEFSQVHPKV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY---AAPHYLKNCRE 179 ++L+ D++ + +S AD R+ +P + +I RKL+ I Y APH Sbjct: 121 VVELLTDSRFLSLSRREADLVFRI-QPFTEAEVISRKLIHIEYGLYISRGAPHPEAGDGA 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238 + +D+ FGD M D WL + PR ++ NS C G Sbjct: 180 GTRLVTMDE----AFGD-----MPDVGWLQRL-----LPRAGIVMRSNSRDVQAALCANG 225 Query: 239 SGIALLP 245 +G+A+LP Sbjct: 226 AGLAVLP 232 >gi|254248789|ref|ZP_04942109.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124875290|gb|EAY65280.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 310 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 17/277 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA +G + A +L ++ + S+Q++ LE + ++LF R + LT +G +L Sbjct: 7 LTVFVRVAVAGGISAGARELAMTPQAASKQVAALEALLNVRLFQRSTHRIALTVEGERLL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +LET L + V G LR+A L + L L EF +P + +L+ Sbjct: 67 AQCRGAVGELETALRMLDDDRVHAVGTLRVAAPYSLARRFLAPLLGEFCDQHPGMTAELV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + DI D A+R + S LI R++ + + AAP YL+ P +I L Sbjct: 127 VSDDMADIVEQRIDLAVRT-GDLPDSGLIARRIAELQLVVCAAPAYLRRHGAPQTIDALR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGI 241 H F L P+ + F W VD R+ Q++ +++ + + G+ I Sbjct: 186 DHRCTAF--LYPRTGKPFPWEFLVD-----GRVDTRQIDPFIATNDIDAELDTVLSGAAI 238 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 Y V ++ LV ++ +T + +Y C P+ Sbjct: 239 GQFFGYSVHEHVREGRLVPLLTRHVTCRYGLYLCMPQ 275 >gi|261213016|ref|ZP_05927300.1| transcriptional regulator LysR family [Vibrio sp. RC341] gi|260838081|gb|EEX64758.1| transcriptional regulator LysR family [Vibrio sp. RC341] Length = 299 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +HN + + + +F N++ V ++ ++ + + G Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV I + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDIFPEQVGKKLGIYAVYP 272 >gi|149188654|ref|ZP_01866946.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] gi|148837564|gb|EDL54509.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] Length = 316 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 15/224 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +LR+F V + GSF AA ++ SS+S+QI LE +G++L R R LT G + Sbjct: 6 QLRLFVDVVQQGSFAKAATLNNMDNSSLSKQIKKLEETLGVQLLNRSTRSFFLTSAGEDI 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 T + L+ + +P G +RI + + LGQ +Q + F+ YP++Q+ L Sbjct: 66 LAETHVLLESLDNIKGIADSYQSEPKGVIRIVSAVFLGQQYVQPVISCFMRKYPNVQVTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ DI D+ D AIR+ K + S+LI +KL + A+ +LK P + +EL Sbjct: 126 HLDDRKTDIIADHFDLAIRMGK-LTDSNLIAKKLAKTNFAIVASKEFLKQHGTPQTPEEL 184 Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228 + + GD+ C++ F T SC ++ SY Sbjct: 185 ITLPAVIYNNGDV---CLDSFKMSRTP---------SCQEMTSY 216 >gi|332084038|gb|EGI89245.1| hypothetical protein SD15574_5128 [Shigella dysenteriae 155-74] Length = 203 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 67 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIRTSA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITF 194 H ++ + Sbjct: 186 SHAIVRY 192 >gi|86137229|ref|ZP_01055807.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] gi|85826553|gb|EAQ46750.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] Length = 292 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 10/297 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R I +E +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIEAIEARLGVKLFQRHARGYTPTESG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L+ + SG+L + T++ +LL L EF ++P + Sbjct: 63 QDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMSHLLVPVLTEFQQMHPGLV 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ + + + A A+R P Q +++Q + +A+ Y+ Sbjct: 122 IRYLTGERLFRLEYGEAHVALRAGNAPDQPDNVVQ-PFARQRIGLFASQSYVDRHGVLEG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I +L H + G FN WL R + + +++ + + G+GI Sbjct: 181 IDDLKNHQFV--GTDNENSRAPFNKWL----REHTNEETIIFRCSDGVAMQEAIMAGAGI 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + P+LV++ME +++ L T K+++F +F+ +++ W+ Sbjct: 235 GFMSTWEASRRPDLVKMMEPREEWEGSLWLVTHVDLHRTNKVQSFLSFLKERSKAWQ 291 >gi|103485581|ref|YP_615142.1| LysR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98975658|gb|ABF51809.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis RB2256] Length = 300 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 127/291 (43%), Gaps = 23/291 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RV V +GS + + L S+SR+++ LE +G L R +R + LT+ G Sbjct: 5 DAMRVLLAVVDAGSLSAGSRALGSPLPSVSRKVAELERYLGTNLLVRTSRNIQLTDAGRD 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + LE T+ P G+L I I+ G + F+ YP++ + Sbjct: 65 YVEAARRIIADLEETERRASGEYQTPRGELSITMPIEFGVRHVIPIALAFIDEYPEVTLN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI ++ + + ++ D AIRL + S+L K + A A+P YL P S +E Sbjct: 125 LITSDRLVHMVDEHVDVAIRLGH-LPDSALFAVKAGEFRLIACASPAYLDRRGAPTSPRE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLG 238 L H+ I FG L W +D GE PR+S VNS + + G Sbjct: 184 LSGHDGIMFGPL------PMFWGYRID---GEDVMCTPRPRVS---VNSAAGNLAAVLSG 231 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+A L DY V + + LVRI+ D V+ YP K++AF Sbjct: 232 VGVARLFDYQVSEHLQSGALVRILPDADGEPRPVHIVYPRQGLLPLKVRAF 282 >gi|107028381|ref|YP_625476.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686377|ref|YP_839624.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105897545|gb|ABF80503.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652092|gb|ABK12731.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 330 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 18/247 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F AR SFT A ++L+++QS++SRQ+ LE ++ I+LF+RH R LTLT++G + Sbjct: 17 DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ S LE+ +L S + S + ++TT+ L L F YPDI ++ Sbjct: 77 LYDAISFALSDLESVVGKLSSSVGQRS--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++ D+ A+R P S+ L + ++V + +P + + Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDDTDVLFRERVVAV-----CSPSLMTAAGDAA 189 Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 S+Q +LDKH L+ D P+ ++ + + + +G PR+ L + Y ++Q V Sbjct: 190 SMQPADLDKHVLLHLDD--PRGEWPWHGWSHLLKALGVPRLRPAGALHFSQYDQLVQAAV 247 Query: 237 LGSGIAL 243 G GIA+ Sbjct: 248 DGHGIAI 254 >gi|304410979|ref|ZP_07392595.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307301898|ref|ZP_07581656.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|304350514|gb|EFM14916.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306913936|gb|EFN44357.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 330 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 107/187 (57%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V + GSF AA+ L L +SS+S++I+ LE ++G++L R R L LT+ G++L Sbjct: 15 LYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQLGLRLLQRSTRQLNLTDSGTELL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +T + L T +++ KPSG+++I+++ LGQ L L + L+P+I I + Sbjct: 75 AITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILGQRYLLPLLPKLKQLFPEIVIDIN 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ D A+R+ + + SSL+ R++ T +A+P YLK + +L Sbjct: 135 LDDRVVDLIELGIDIALRVGE-LPDSSLVARRIGTKSWACFASPAYLKQAAKLEVPSDLA 193 Query: 188 KHNLITF 194 H + F Sbjct: 194 AHQCLIF 200 >gi|229588511|ref|YP_002870630.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360377|emb|CAY47234.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 322 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA QL + +++SR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ T +GQ+ + + + +PD+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRRTHPDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N+ D+ + D +I L + S + ++L + A A+P Y+K +L Sbjct: 126 TLANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIACASPDYVKAKGCAHRPHDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 H + L+ ++ W T + P G+ + S VNS ++ G GI Sbjct: 186 LNHACLR---LVSPVIQLDKW--TFNGPEGQESVAINTSPFLVNSADAMKTAITSGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP Y + N LVR+M + + +Y YP K+K + ++ Sbjct: 241 LLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291 >gi|213426510|ref|ZP_03359260.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612647|ref|ZP_03370473.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213850452|ref|ZP_03381350.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289824321|ref|ZP_06543914.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 299 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 7 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 67 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 186 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 236 LGIIQTPRIAVREALRAGALIEILPQYRAAPLPVTLHYP 274 >gi|167562996|ref|ZP_02355912.1| transcriptional regulator [Burkholderia oklahomensis EO147] Length = 313 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + E ++ +PSGKL++ LGQ+ + + YP++ + L Sbjct: 66 LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYQQRYPEVHVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ + + + S L+ ++L A+ Y++N P Q+L Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGVTFSVVCASRGYIENHGAPQRPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H + G + P D W + P GE ++ +VN ++ G GI Sbjct: 186 ANH--VCLGMVAPGLYWD-EW--KLMGPRGEESVTLAPPPFRVNVAEALAAGIREGMGIG 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y N + VR+M + + +Y Y A R ++ K R W Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|126439144|ref|YP_001058745.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126218637|gb|ABN82143.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] Length = 301 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET++G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLETQLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ P+ W RP + N + + G+GIAL Sbjct: 184 ADLCAHRCIVLGEQ-PR----VEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296 Query: 298 KF 299 ++ Sbjct: 297 RW 298 >gi|116050478|ref|YP_790703.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891487|ref|YP_002440354.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254240965|ref|ZP_04934287.1| hypothetical protein PA2G_01645 [Pseudomonas aeruginosa 2192] gi|115585699|gb|ABJ11714.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] gi|126194343|gb|EAZ58406.1| hypothetical protein PA2G_01645 [Pseudomonas aeruginosa 2192] gi|218771713|emb|CAW27487.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 303 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F + G+F AA+ L L ++S+++ I LE +G++L R R ++LT G Sbjct: 4 FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + P G+LR+ LG+ + L EF YP++++ Sbjct: 64 AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL +++ +D+ + ADC +R+ + + SSL+ R L + A+ YL+ P + Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H + + P F++ +VD R P S + VN+ + + C G G+ Sbjct: 183 ELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + +L +++ + + PS ++ YP + + +++ F +++ Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290 >gi|16766893|ref|NP_462508.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422169|gb|AAL22467.1| putative LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248760|emb|CBG26610.1| hypothetical lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995844|gb|ACY90729.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160146|emb|CBW19666.1| hypothetical lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914631|dbj|BAJ38605.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323131967|gb|ADX19397.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990458|gb|AEF09441.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 299 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 7 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 67 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 186 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 236 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 274 >gi|330809357|ref|YP_004353819.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377465|gb|AEA68815.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 313 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 13/237 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F AR SF+ AAE+LH++Q++ISRQI GLE ++G+KLF R R + LT QG +L RV Sbjct: 17 FEAAARLESFSKAAEELHITQAAISRQIRGLEEDLGLKLFCRRNRAVFLTPQGRELGRVV 76 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQLIL 128 S + + + L++S GK R+ L + L L F YP+I+IQ+ Sbjct: 77 SNALQSISASAVSLRQS----PGKNRVVLLCQLCEAFYWLMPRLSTFHQRYPEIEIQVAT 132 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY--AAPHYLKNCREPLSIQEL 186 + ++ D A+ + S + + T + +PHYL+ + L +++L Sbjct: 133 STGPLTEFNEHFDVAL---QSTGRPSGVHGLMFTAADEVFPVCSPHYLRT-HKALQVRDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H L+ + P M+ W + + +SY ++Q V G GIAL Sbjct: 189 KSHTLLHYHATPPHWMQWGAWFQAFGQSFDNSSEGSV-FDSYPLMLQAAVEGHGIAL 244 >gi|324006162|gb|EGB75381.1| LysR substrate binding domain protein [Escherichia coli MS 57-2] Length = 299 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL + +I IQL Sbjct: 69 SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHSEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +K+ L+R++ D TP Y Y ++ G AF FI Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290 >gi|194364236|ref|YP_002026846.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347040|gb|ACF50163.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 309 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 10/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF VA GS T AAE L +S++ +SR ++ +E +G +L +R R ++LT G Sbjct: 7 MTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEGWLGARLLHRTTRRVSLTGPGEAAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E + EL +P G LR+ ++ GQ+ L + F+ +P +I+L+ Sbjct: 67 ARFRQMLAIGEELRGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPAARIELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D A+R+ + I SLI R+L T A P YL+ P + + L Sbjct: 127 LVDRTVNLVEERVDLAVRIARQID-PSLIARRLATCRSVLCATPSYLQARGTPTAPEHLA 185 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN +T + K + W L R + + N +++ G+GIA+LP Sbjct: 186 AHNCLTH-HYVGKSL----WQLHREGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPT 240 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V + L+ ++ + ++ Y + ++ F +F+ Sbjct: 241 YQVAPFLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFL 287 >gi|149917748|ref|ZP_01906244.1| transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] gi|149821530|gb|EDM80930.1| transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] Length = 299 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 120/284 (42%), Gaps = 6/284 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW++ R F V A GSF+ AA L +Q ++ RQ++ LE E+G+ LF R L LT Sbjct: 6 VNFDWNRARAFLVTASEGSFSAAARALGTTQPTVGRQVAALEEELGVTLFERLGTRLELT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + + ++ G + I + LL L YP Sbjct: 66 ATGVELVEHVRSMGEAATRMSLVATGQALSVEGTVSITASEATAAFLLPPVLTRLRTEYP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+I ++ N+ D+ AD AIR + Q LI RKL YA+P Y++ Sbjct: 126 GIEIDIVASNQIRDLRRREADIAIRNTRTGQ-PELIVRKLRDTEGAFYASPDYIERAGPF 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S ++ + + F D ++ RP P + +L + C G G Sbjct: 185 DSAEDFHRAEIFAFDDSA-MMIDGLRAFGLEVRPEQFP----IMTGDHLVQWELCKRGVG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 I ++ + P + R+ DV T +Y L+ + +++ Sbjct: 240 ICIMMREVGDAEPGVRRVFPDVPTIPVPIYLVCHRELRTSRRIR 283 >gi|325168438|ref|YP_004280228.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064161|gb|ADY67850.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 287 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 15/273 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W +++F +ARSG+ AA LH S ++ R++ LE +G LF R A GL LTE+ Sbjct: 1 MEWSDVKIFLAIARSGTLGSAARALHTSHPTVGRRLRALEEAIGHTLFQRTADGLVLTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + ++ + L QE ++K G LRI++ G +L L +F YP Sbjct: 61 GHGIIALAEQMEEGALAMERRLAGQEQNLK--GNLRISSADWFGAYVLPPILADFSKAYP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++++ + +++ AD A R+ P ++ +IQR+L + Y A + +P Sbjct: 119 NVDVEILTGTRLFNLAQREADVAFRI-VPFDTADVIQRRLFRLEYDVYIA----EESPDP 173 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + LIT D D WL T P P L+ N+ + C G G Sbjct: 174 -KYGDGTGFRLITH-DTSTGQFPDIAWL-TESFPNARP---VLRSNNRNVQARMCKQGIG 227 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273 IA+LP + P + R+ P+ ++ Y Sbjct: 228 IAVLPRVVGNQIPGIRRLELPKPPPARDIWMGY 260 >gi|296159034|ref|ZP_06841861.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295890595|gb|EFG70386.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 312 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/305 (24%), Positives = 137/305 (44%), Gaps = 15/305 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++RVF V SG+FT AA L+ S +ISR ++ LET + +L R R + LT G Sbjct: 5 NQMRVFARVVESGTFTAAANTLNTSPGAISRAVAELETRLRTRLLNRSTRKVALTPAGEI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +E + E ++ +P GKLR+ + +GQ + +KE+ YP++ ++ Sbjct: 65 YLQRCKQILADVEMAEEEASDAQSRPMGKLRVHSFTGIGQYYVLPAIKEYRSRYPNVSVE 124 Query: 126 LILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + ++ D A + + S L+ L + A+P Y+ P S + Sbjct: 125 LTLSQRAPELYKGSTDIAVVATSSALPDSDLVSHLLGSSFSVLCASPDYVHQRGMPDSPE 184 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 +L +H LI P + WL D ++S +++N+ +I GI Sbjct: 185 QLARHECLILHSPAFPA----YEWLLESDNGSESMKVSGAVELNTPEAIGMAARASMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-----FLKA 294 +LP Y + N LVR++ +Y +P ++K + F+ + A Sbjct: 241 VLPIYTALEGLSNHTLVRVLPGYTLQKMNIYALHPSRRYTDARIKTWVEFLRQHLPTVTA 300 Query: 295 RDWKF 299 RD + Sbjct: 301 RDAQL 305 >gi|229489458|ref|ZP_04383321.1| LysR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229323555|gb|EEN89313.1| LysR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 307 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 26/264 (9%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +LRV VAR GS T AA+ L +Q SIS + LE+EVG+ LF R RGL LT+ Sbjct: 2 LDLIRLRVLVAVAREGSVTAAADSLGYAQPSISHHLRQLESEVGVPLFQRAGRGLRLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L R +E+ ++ E+Q + +G+LR+A +L+ + F YPD+ Sbjct: 62 GAVLVRRATEILGHVDAAVAEVQTYAGLRTGRLRLAAFPSALASLIPQAMAAFTSQYPDV 121 Query: 123 QIQLI----------LDNKDIDISMDYA--DCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170 I L+ L N D+D+++ +A D K + ++L++ L Sbjct: 122 SISLVDAEPPKALALLRNNDVDVAVVFAHEDTPEVGLKHVAQTTLLEDPL---------- 171 Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230 + + + R + E+ + T+ P C + L +R PRI + + Y++ Sbjct: 172 -YLITSARNADAANEITDYAGETWIAGCPSCRA--HLLTACNRAGFIPRIE-FETDDYVA 227 Query: 231 IMQYCVLGSGIALLPDYIVKDNPN 254 + GSG++ LP ++ + N Sbjct: 228 VQALVASGSGVSTLPALALQAHQN 251 >gi|157144708|ref|YP_001452027.1| hypothetical protein CKO_00434 [Citrobacter koseri ATCC BAA-895] gi|157081913|gb|ABV11591.1| hypothetical protein CKO_00434 [Citrobacter koseri ATCC BAA-895] Length = 300 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 10/274 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F + GSFT AAE L LS+ +SR+++ LE +V +L R+ R L++T+ G Sbjct: 4 EDIRIFVTIVNMGSFTAAAEHLSLSKQFVSRRMAALEKKVSARLLVRNTRKLSVTDTGQA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + + K +G RI+ + G L + EF +P++ + Sbjct: 64 FFHHARRILEEVHEAEQVISARQQKLAGSFRISLPMTYGIRRLAPLIVEFQAAHPELTVH 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++++ +D+ + D +R+ + S+LI R L + M A+P YL+ PL+ E Sbjct: 124 IDMNDRYVDVVGEGYDMVLRIGN-LMDSTLIARCLGKLPMVICASPDYLRLHGTPLAPSE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H+ + +G F W L + P L N+ I + G+GIALL Sbjct: 183 LAQHSCLLYGR-----EGQFGWKLTEENSPNTYAVRGNLSSNNGDVIREAAEAGAGIALL 237 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 P +IV+D+ LV+I+ D P T+ YP+ Sbjct: 238 PLFIVEDSLQQGALVQILSDYSPPPLTISALYPK 271 >gi|33592370|ref|NP_880014.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33572015|emb|CAE41538.1| probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gi|332381786|gb|AEE66633.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 303 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 14/272 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GS + AA L +S++ +SR ++ LE VG++L +R R L+LT GS+ Sbjct: 7 MQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVGVRLLHRTTRRLSLTPAGSETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +P G LR+ + G L + EF+ +P I L+ Sbjct: 67 PRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGGAQLAEAVAEFVRRHPAASIDLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D A+R+ + +LI R+L AP YL+ P ++L Sbjct: 127 LVDRAVNLVEERVDLAVRITNDLD-PNLIGRRLADCRSVVCVAPQYLQQHGAPARAEDLS 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 HN +T FG + + F P+ P + N +M+ + G+GI +L Sbjct: 186 LHNCLTHSYFG----RSLWRFE---RAGEPVEVPVGGNITANETDVLMRAALAGAGIVML 238 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 P Y+ +L ++ D P ++ Y Sbjct: 239 PTYLAAGQIAAGSLRLLLPDCAPPVLGIHGVY 270 >gi|145299300|ref|YP_001142141.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142852072|gb|ABO90393.1| transcriptional regulator, LysR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 301 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 7/260 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GS T AA+ L ++ S++S+ IS LE+ +G+ L +R AR L LTE G + + Sbjct: 9 IFAAVVEAGSMTGAAKALGMTPSAVSQHISQLESLLGLTLLHRSARRLNLTEAGEVVWQG 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + L T++ L E G++RI + + L L L +P + IQ+I D Sbjct: 69 CQSLQQTLNQTELRLSEVRDSLLGEVRITAPVGMAGQPLARALSPLLQAHPGLCIQIIAD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ + D A+R+ + SSL+ RKL M A+P YL P S +L +H Sbjct: 129 DEKRDLIAERIDVALRVGT-LSDSSLVARKLGQTRMLLCASPAYLARKGTPRSPADLLEH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + D++ + F+ + +PR+ C N+ L + Q+ + G G++L P+ + Sbjct: 188 DWLA-ADMLSGGLTFFDDKGQGHKVKPKPRVVC---NNVLPLRQFTLAGQGVSLQPEGEI 243 Query: 250 KDNPNLVRIMEDVITPSFTV 269 ++ R++E + P F V Sbjct: 244 AEDLAQGRLLE--LLPGFRV 261 >gi|91778485|ref|YP_553693.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691145|gb|ABE34343.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 303 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 16/296 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F +A S S T AA +L LS +++S+ ++ +E+ G+ L R R ++LT +G Sbjct: 8 DDLAFFSTLAASASLTAAARELGLSTAAVSKHLAQMESRAGVSLVNRTTRRMSLTPEGEL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ L S P G LR+ T+ G++ + + F+ +P++ +Q Sbjct: 68 YLTRARRILNDMDDLAQLLGGSQAAPKGLLRVNATLGFGRSHVAPLISTFVRRFPEVDVQ 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L S D D +R +P + +I R++ + A+P YL R P S E Sbjct: 128 LQLSVDPPPFSDDAFDVCVRFGEP-PDARVIARRVASNRRLLCASPRYLAQRRTPRSPAE 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238 L +HN I I + + + W T R E + ++V L+ +++ + G Sbjct: 187 LAQHNCIG----IRQGGDGYGLWRLTSGRGAAE-KTETVRVRGNLTTNDGEIAVKWALDG 241 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GI + ++ + D + LV I+ D TP +Y YP+ L+ T ++KAF + + Sbjct: 242 HGILMRAEWDIADYLADGRLVHILPDYRTPGADIYAVYPQQLQMTARVKAFVDMLI 297 >gi|16762695|ref|NP_458312.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144182|ref|NP_807524.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213584054|ref|ZP_03365880.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|25319792|pir||AF0986 hypothetical lysR-family transcription regulator STY4196 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505001|emb|CAD08018.1| hypothetical lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139819|gb|AAO71384.1| hypothetical lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 300 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGALIEILPQYRAAPLPVTLHYP 275 >gi|221639383|ref|YP_002525645.1| LysR family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160164|gb|ACM01144.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 129/271 (47%), Gaps = 12/271 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR+F VAR+ S + A L L +++ R+I+ LE +G+ LF + +G LTE Sbjct: 1 MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + +LQ + SG++RI LL L + P + Sbjct: 61 GQRLLAHAERAEQAVGEAAEDLQ-GAAGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++Q++ + ++S AD AI + +P ++ L +KL +H A+ YL + Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178 Query: 183 IQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++L H L+ + IP + ++ ++L IG + NS + + G+G Sbjct: 179 LEDLKAHQLVGY---IPDMIFDKELDYLTG----IGSGSVP-FASNSVSVQLNWLRAGAG 230 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271 + ++ D+ + P LV+I+ + ++ S + + Sbjct: 231 VGIVHDFAMPSAPELVKILPEALSLSRSFWL 261 >gi|78062085|ref|YP_371993.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969970|gb|ABB11349.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 303 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 21/298 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE + ++L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + +++ P G +R+ N + L F YPD+++ + Sbjct: 67 ERCMRLLADLDDAETLFEDAGTTPRGAIRVDLPERFALNQVIPALPGFHARYPDLRVVIG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + AAP YL+ P S EL Sbjct: 127 TTDRFVDLVADGIDCAVRV-GAMSDTSLVARRIGELAQINCAAPAYLERHGTPRSPDELP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D G+ S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGQLHAVKMRSVVSVNSSQAYLACCLAGLGLIQ 242 Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P ++ D +LV ++ + V +P TG+ A R IF+ DW Sbjct: 243 APREGLGPLLADG-SLVEVLPEWNAEPLPVSVVFP-----TGRHLAPRVRIFV---DW 291 >gi|89071934|ref|ZP_01158530.1| putative transcriptional regulator (LysR family protein) [Photobacterium sp. SKA34] gi|89052035|gb|EAR57486.1| putative transcriptional regulator (LysR family protein) [Photobacterium sp. SKA34] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 131/281 (46%), Gaps = 22/281 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + D LR F VVAR GSF AA L + S++SR+I LE ++ ++L R A +TLT Sbjct: 5 YSLDDLRCFCVVARHGSFKAAATSLGMPLSTLSRRIRQLEDDLQLRLLNRDAHRVTLTST 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ ++ +L EL P GK+RI+ I+ G L+ +FL+ YP+I Sbjct: 65 GEQYFQRSAILFDELHDIDQELHRDKYYPQGKIRISAPINAGSKYLRKIFYDFLIQYPEI 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKNCREPL 181 Q++L +ID+ + D A R+ + I + + IH + P Y + P Sbjct: 125 QLELNFSGANIDVEAEGIDMAFRV-GTLSDEDWIAKPIKDIHFIFCSHPDYDVSTLSNP- 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISC-LQVNSYLSIMQYC 235 +EL H LI C W ++ GE P+ + L+V+ +++ Sbjct: 183 --EELHDHPLII-------CRPIRVW-EMINHESGEKYDYSPKENVRLEVDEGFMMLEAI 232 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G GI +P Y+ N + R++ + + T++ Y Sbjct: 233 KTGIGIGYVPSYLAYPMIANGEIKRVLPAWSSEARTMFMLY 273 >gi|115351408|ref|YP_773247.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281396|gb|ABI86913.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 301 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 10/291 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE+++G++L +R R TLT+ G Sbjct: 5 DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E + + + G LR+ +LG+ + + F +P++ Sbjct: 65 AQFHAQVLRILAEVERAETLMSDRRGTVGGVLRVTAPGELGRLRIAPLIAAFQRRHPELI 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + S++I R+L H A+P Y+ P Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRI-GSLADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H I GD P+ F+ TV + + L N + + G+GIA Sbjct: 184 AELRAHRCIVMGDQ-PRAEWRFDGAHGTVAVEV----TAALLTNDGGAARTLALEGAGIA 238 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + V D LVR++ P+ ++ YP +++AF +F+ Sbjct: 239 LKSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFL 289 >gi|294085619|ref|YP_003552379.1| LysR family transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665194|gb|ADE40295.1| transcriptional regulatory protein, LysR family [Candidatus Puniceispirillum marinum IMCC1322] Length = 306 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 23/303 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++R F V +GS T AAE+L ++ S++SR++ LE +G L R R + L E G + Sbjct: 5 EEIRAFVTVVETGSLTQAAERLGIAVSAVSRRLKDLELRLGAPLIQRSTRRMYLNETGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +LE Q E+Q + SG LR+ + G + + +F+ PD++I Sbjct: 65 FFSRCRTILDELEAAQQEVQNTEGILSGVLRLNAPLSFGITHITPLITDFMKENPDVRID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L +K ID+ + D AIR+ +Q SSLI +K+ T A+P ++ + + Sbjct: 125 IDLSDKRIDLIAEGFDLAIRI-GALQDSSLIAKKISTARQVPCASPDFIAKHGALDNPEA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GS 239 L+ + + + + D+ ++ E + + V+ LS VL G Sbjct: 184 LNDMPGLIYAN--SRTPSDWTYVTP------EGKAGTVHVSQRLSATNGDVLRDAAIAGL 235 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+ LP +++ + N LV +M D ++ YP+ + +AF +F+ Sbjct: 236 GVVNLPTFLLFEAINDGTLVPLMADHDWSELDIFAVYPKTTILPRRTRAFVDFMA----- 290 Query: 297 WKF 299 W+F Sbjct: 291 WRF 293 >gi|187919825|ref|YP_001888856.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718263|gb|ACD19486.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 304 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 12/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V S SF+ A++LH +QS+IS+Q++ LE +G L R R L LTE+G + Sbjct: 7 MQTFVRVVESRSFSAVADELHATQSAISKQVAALERSLGANLLVRTTRSLALTEEGERYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + L+ + G +R+A + G+ L +K F+ +PD+++ L Sbjct: 67 VQARRLVAEIAEAESALKTGEEQLRGWIRVAAPVGFGRLKLMPLVKSFMAAHPDVRVDLR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCREPLSI 183 L + ID+ D +R+ + S L+ R++ T A Y++ P+ Sbjct: 127 LHDSFIDLVDQGIDVTVRI-GALDDSRLVARRVGTSQRMLLAHSDYVRALSPGSHAPVDP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGS 239 ++L H I + ++ F A G R +Q NS + V G Sbjct: 186 EDLLAHECIVYTEMSNSNSWTFTAGAGASATRGTLRSVRVAGHIQTNSSEVLRLAVVTGM 245 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI P ++ ++ + +VR+M +P ++ P K+ K++AF Sbjct: 246 GIGYAPTWLFENELASGEVVRLMPYWESPQSPIHLVSPPERKHAAKVRAF 295 >gi|327194116|gb|EGE60990.1| LysR family transcriptional regulator [Rhizobium etli CNPAF512] Length = 289 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 127/275 (46%), Gaps = 15/275 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ +W +++F VARSG+ AA LH S ++ R++ LE +G LF R A GL LT Sbjct: 1 MAVEWSDVKIFLAVARSGTLGGAARALHTSHPTVGRRLRTLEEAIGHTLFQRTADGLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E+G + + ++ + L QE ++K G LRI++ G +L L +F Sbjct: 61 EEGHGIIALAEQMEEGALAMERRLAGQEQNLK--GNLRISSADWFGAYVLPPILADFSKD 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP++ ++++ + +++ AD A R+ P ++ +IQR+L + Y A + Sbjct: 119 YPNVDVEILTGTRLFNLAQREADVAFRI-IPFNNADVIQRRLFRLEYGVYIA----EESP 173 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +P + LIT D D WL P P L+ N+ + C G Sbjct: 174 DP-KFGDGTGFRLITH-DTSTGQFPDIAWLVE-SFPNARP---VLRSNNRNVQGRMCKQG 227 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273 GIA+LP + P + R+ P+ ++ Y Sbjct: 228 VGIAVLPRVVGNQIPGIRRLELPKPPPTRDIWMGY 262 >gi|299531447|ref|ZP_07044855.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298720610|gb|EFI61559.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 291 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 134/274 (48%), Gaps = 11/274 (4%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 SF A L +S S++ + ++ LE ++G++LF+R R + LT++GS H + +L Sbjct: 18 SFAEAGRALCISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQEGSLFHERCRRILDELH 77 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + +Q ++ P G+LR++ +G L L EF YP++++ L ++ +D+ Sbjct: 78 DARAAMQAAAEAPRGRLRMSLPT-IGYRFLLPVLPEFQARYPEVELDLDFNDHLVDVVEA 136 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D IR + S L+ R+L A+P YL PL+ +L H+ + + L Sbjct: 137 GLDVVIR-SGELADSRLVARRLGPFRFILAASPAYLSERGVPLTPADLAGHSSLRYRFLN 195 Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255 +E++ PI L N+ +++ V G G+A +PD++ +D L Sbjct: 196 SGKLEEWMLPGLPAMPI------ALVCNNMEAMLGAAVSGLGLAYMPDFMARDALARGEL 249 Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +++ + +T S +P + + + K++AF +F Sbjct: 250 QQVLAEQLTHSGQFSALWPSSRQLSPKVRAFVDF 283 >gi|307728771|ref|YP_003905995.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583306|gb|ADN56704.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 305 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 11/294 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + F V S T AA L L +S+IS +++ LE E+G++L R R ++TE Sbjct: 2 LDLNDIYYFVQVIEHKSITAAARALALPKSTISYRVAQLEAELGVRLINRTTRQSSVTEI 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ + + + + +++ + PSG +RI+T + Q L+G L +F +P + Sbjct: 62 GAEFYAHAIAMLQEAHAAESAVRQRILSPSGLIRISTAVATAQFALKGLLPKFCERHPKV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +I + ++D+ + D AIR +Q+S+L+QR L +A+P +L P Sbjct: 122 RILQRTADIEVDVIAERFDIAIRAHSHALQNSTLVQRTLALTPWMLFASPGFLDGSVAPK 181 Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239 ++L + +L D +P W+ + R+ L + L++ G Sbjct: 182 EPEDLIGRRSLFMVRDGVPN-----EWVLKSGGDVRRLRVDPVLMTDCMLTLKDAAAAGL 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI LP YI K+ L+R++ D + P A ++AF +++ Sbjct: 237 GIVALPAYICKEEVAQGALIRVLSDWTCGDAQLTALVPFAQNRLPSVRAFLDYL 290 >gi|251791692|ref|YP_003006413.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247540313|gb|ACT08934.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 296 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V SGSF+ A+ +L + Q +IS+ I LE ++ +KL R RGLT TE G + + Sbjct: 7 LETFVCVYESGSFSAASRRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L Q E++ + + SG LR++ + + + +L F+ +P +++ I Sbjct: 67 GQVAPALQQLHDAQDEVRGGNGELSGYLRVSAPVTFARLHVLPHLHVFMSQHPQLKVDTI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ + D A+RL ++ S L RK+ + M A P Y P S + L+ Sbjct: 127 LDDRPVDLIAEGIDVALRLGD-LKDSGLTARKMGSAPMRLLATPAYFAAHGLPASPEALE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 H+ + L + NW D + +S ++ + + + + G+G+ + Sbjct: 186 NHDAV----LYLQADTPGNWRFRRDDRQCQVTLSGRIRTTAAEGVREAVLAGNGLTVASA 241 Query: 247 YIVKDNPNL-----VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ P L V + D ++ YP + + +AF F+ Sbjct: 242 WMFA--PELASGVVVTALTDWHIGVMDLWAVYPGGRLTSARARAFTEFV 288 >gi|209548436|ref|YP_002280353.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534192|gb|ACI54127.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 300 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 14/298 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G F+ AA +L++S + + + LE +G++L R R ++LTE G + Sbjct: 7 LTVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +S++ +L+ S P G L++ T+ + + LL + E++ LYP I + Sbjct: 67 ERSSQILAELDEADRTAGALSTTPRGTLKVYTSSAIVRFLLP-VVSEYMELYPSIALDFS 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D IR P SSL+ RKL +P Y ++ R P E+ Sbjct: 126 IGERMVDMIEDGYDLVIRTVPP-PDSSLVARKLTPWRHVLVCSPAYFESHRMPQKPAEVA 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVL-GSGIALLP 245 HN + + P E W E +I V++ ++++ L G GI L P Sbjct: 185 DHNCLQYA-YYPYGEE---WRFEDGEGRQESVKIGGNAVSNSAEMLRFLTLNGQGIFLAP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 ++V D+ LV+IM D F++ YP K++ F + + F + R W Sbjct: 241 SFVVFDDIAEGRLVKIMPDYRPVEFSINAVYPNRSHLATKVRLFIDLLAERFAEHRKW 298 >gi|158424896|ref|YP_001526188.1| regulatory protein [Azorhizobium caulinodans ORS 571] gi|158331785|dbj|BAF89270.1| regulatory protein [Azorhizobium caulinodans ORS 571] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 7/272 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR SFT AA ++ +SQS++S I LE +G++L R R ++ TE G + Sbjct: 7 NDLLVFLAVARERSFTRAAAKMGVSQSALSHTIRQLEARLGVRLLTRTTRAVSPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E L + KP+G +RI+ ++L LK FL +PDI+++ Sbjct: 67 LLAGIGPHFDEIEAQVDALNDLRDKPAGTIRISAPDFAISSVLWPKLKAFLPQFPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ +N DI + D +R+ + + R + Y + EP + Q+ Sbjct: 127 LLQENGLTDIVTERYDAGVRMGDQLAKDMISARIGPDFRFAVVGSKSYFASRPEPATPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +H+ I + P + W + + R+ L N+ + + V G G+A + Sbjct: 187 LVQHSCINY--RFPTSGGLWAWDFEEEGREFKIRVEGQLVFNNIFNALDAAVAGFGLAYV 244 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 P+ + + LVR++E +P + Y+ Y Sbjct: 245 PEELAIPHLAKGRLVRVLER-WSPYWDGYYLY 275 >gi|90023597|ref|YP_529424.1| LysR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89953197|gb|ABD83212.1| transcriptional regulator, LysR family [Saccharophagus degradans 2-40] Length = 304 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 138/302 (45%), Gaps = 28/302 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D L F +A S SFT A+E L++++S++S+ IS LE E+G K+F R +R + LTE Sbjct: 5 TIDLKLLHYFVTIAESLSFTAASESLNIAKSALSKGISKLEDELGTKVFERSSRVVRLTE 64 Query: 62 QGSKLHRVTSEVYHKLE---------TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL 112 G L YH+ E + I+ ++SV SG L+IA LG+ L + Sbjct: 65 AGQIL-------YHRAEVLLEDADHLVSDIKTLQNSV--SGHLKIAAPPTLGRMLAAEII 115 Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172 FL +PD+ I L L D+ + D A R+ + +LI+R L + AAP Sbjct: 116 PPFLKQWPDVSISLKLSYDYEDLFKEGLDLAFRMGVN-RDQNLIERPLGRANRVVVAAPD 174 Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSI 231 YL + +L H + F + IP+ W + +S LQ + ++ Sbjct: 175 YLAQHAPIRTPHDLLPHKSLQFSNHIPQ-----EWTLQNRAKVEHVTLSVALQCSDLAAL 229 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 G G+A LP +V+D N +L ++ ++ + Y E + KL F Sbjct: 230 RNAARAGLGVAQLPWMLVRDDINNGHLTHVLPQWLSTGLPIALVYKEGHRKAAKLAEFLK 289 Query: 289 FI 290 F+ Sbjct: 290 FV 291 >gi|270262583|ref|ZP_06190854.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043267|gb|EFA16360.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 302 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 9/287 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++ W+ R F V + GS + AA L ++Q + R ++ LE+ +G+ LF R GL T Sbjct: 3 LNIPWEWYRTFLAVMKEGSLSGAARMLAITQPTAGRHVAALESALGLVLFTRSQIGLQPT 62 Query: 61 EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 + L + +E + + G +R++ + +G +L + + Sbjct: 63 DAAVALQGHAQAMENTASMIERSAASFSTRTAGLRGVVRVSASEIIGTEVLPPLIAQIKK 122 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP + I+L+L N+ D+ AD A+R+ P+Q LI R++ +I + +A+ YL Sbjct: 123 DYPQVTIELVLSNRIQDLLNREADIAVRMTAPVQ-EQLIARRIGSIEIGLHASSSYLARR 181 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P S++EL H L+ F + P ++ + R + L+ +S ++ + Sbjct: 182 AAPESMEELFTHTLVGFDKMTPFILQALKHYPQLHR-----ELFTLRTDSDVAQLNLIRA 236 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G+GI + + L R+M D + E L+++ K Sbjct: 237 GAGIGMCQVQLANSPVPLQRLMPDFFAFHLDTWLVMHEDLRHSKACK 283 >gi|288935847|ref|YP_003439906.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288890556|gb|ADC58874.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 294 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 125/264 (47%), Gaps = 13/264 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +F V R GSFT AA++L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L+ + L+ L PSG +RI + +L L F YPDI+ Sbjct: 66 EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI +++ +DI + D +RL + S + R + M P + + P + Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L I FGD + W VD + P+ +SY+ + LG Sbjct: 186 ADLVAQPCIAYQFGD-----GSLYAWELNVDGKKITHPPQGQWAFADSYME-AKAARLGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIME 260 G+A +P+ ++ D+ L+R+++ Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQ 263 >gi|186470558|ref|YP_001861876.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196867|gb|ACC74830.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 316 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 15/292 (5%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 VA +G F AA++L ++ SS++R + LE +G L R R ++LT+ G S+V Sbjct: 13 VADAGGFAKAAQRLGVATSSVTRLMDALEASLGTALLTRTPRKVSLTDAGMAYVEQISKV 72 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 L + +S P G LRI + L +L FL YP I + +++ + Sbjct: 73 LDDLAEADESILDSGASPVGALRITVPSAYNRTQLAPHLAAFLAEYPRIALDVVVADHFA 132 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+++D D A+R+ + +L+ +KL + A+ YL+ P + L++H + Sbjct: 133 DLALDRIDVAVRIGLISRDPNLVVKKLADNPRYVVASHDYLQRAGTPPAPVALNEHECLR 192 Query: 194 F---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 G + + F+ A +R R+ NS +++ + G GIALLPD++V Sbjct: 193 IAYGGSYRARQVWTFSRNALQERVDVRGRLIS---NSLEMLLEAVLAGHGIALLPDWLVN 249 Query: 251 ---DNPNLVRIMEDV-ITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L+R+ D +TP VY Y +++ K++A FL+AR Sbjct: 250 HEIGAGRLMRLFADFDVTPQNGEAVVYAAYLPNRRHSSKVRAL--LRFLEAR 299 >gi|326796530|ref|YP_004314350.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547294|gb|ADZ92514.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 296 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 19/253 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +RVF V + SF A+E L +S+ ++R I+ LE +G+KL R+ R +++T G+ Sbjct: 4 FQAMRVFCRVYEAESFKSASETLDISRPMVTRYINTLEEVLGVKLLQRNTRNISITHAGN 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + LE + EL + S P G+L+++ +D G + + EF LYPDI+I Sbjct: 64 LYYKHCVAILEALEEAENELNDLSNSPRGRLKVSVPMDFGLSHMVPIFNEFRKLYPDIRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + +++ +D++ D A+R + + R L H A+P YLK EP Q Sbjct: 124 DVDFNDRRVDLTESGVDIAVR-GGDLGGDLFVARPLTEFKGHVCASPEYLKTYGEPNVPQ 182 Query: 185 ELDKHNLITFG--------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +L +HN + + I ++F+ L + N+ ++ + + Sbjct: 183 DLIEHNCLLYSLAPSPNKWTFIDSKNDEFDVLVS----------GTFAANNGGALTRMAL 232 Query: 237 LGSGIALLPDYIV 249 G+GI PD++V Sbjct: 233 EGAGIIYQPDFLV 245 >gi|310765471|gb|ADP10421.1| Transcriptional regulator, LysR family [Erwinia sp. Ejp617] Length = 302 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 136/301 (45%), Gaps = 20/301 (6%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M D+LR F SGSFT AA +LHL+ S++S+ I+ LE +G +LF R R L Sbjct: 1 MPVSEDRLRGIAPFVASVESGSFTAAAGRLHLTSSAVSKSIARLEARLGSRLFERTTRSL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT+ G + + V +L + L P G+LR+A G+ + L +F Sbjct: 61 LLTDAGQAFYDTCARVLSELAEAESVLAAQRSIPVGRLRVAVPHTFGRLHVMPLLNDFCR 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176 +P++Q+ L ++ +D+ + D A+R+ P SL R L + + AAP YL Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGVDMAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM---- 232 P S+ +L++H I + + W V P G RI+ V +++ Sbjct: 181 HGTPQSLAQLEQHQAIVYARIDGSTSP---W--HVASPDG--RITTRTVAHRMALADGEA 233 Query: 233 --QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 V G G+A + +++++ LV ++ + P + +P + K+ A Sbjct: 234 QRSAVVAGLGVAQMATWLMEEQLARGELVPLLPQLAVPGLPLCVVWPRRKQLMPKVDALL 293 Query: 288 N 288 N Sbjct: 294 N 294 >gi|188592169|ref|YP_001796767.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|170938543|emb|CAP63530.1| putative TRANSCRIPTION REGULATOR PROTEIN, LysR [Cupriavidus taiwanensis LMG 19424] Length = 306 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 9/271 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A +GSF AA +L L++S+I + I+ LE VG +LF R R L LT+ G + Sbjct: 14 AFVAAAEAGSFAQAAVRLGLTRSAIGKAIARLEARVGARLFVRTTRSLVLTDDGQAFYER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ +L+ Q L+ +G++R++ + G++ + L + +P ++++ Sbjct: 74 CAQALEELDAAQHMLEAGRGAVAGRVRVSAPVVFGRHHVAPLLLQLADRHPQLRLEGNFT 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D + D D AIR + S +L+ R L M AAP YL+ P S L H Sbjct: 134 DRLVDFADDGIDLAIRSGRLPDSDTLVARPLGAQAMVLCAAPGYLRRHGTPASAAALLSH 193 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247 + + + + W LA D P +S L + ++ + G+G+A LP + Sbjct: 194 QCLVY----LRGSQPVPWLLADTDGNPVRPELSHRLAFDDIDTLAMAAIRGAGVANLPLW 249 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 +V+ LVR++ ++ +P Sbjct: 250 LVRAPLQQGTLVRLLPQASASRTPLHLVWPR 280 >gi|169796339|ref|YP_001714132.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213156925|ref|YP_002318970.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|215483800|ref|YP_002326025.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|239503648|ref|ZP_04662958.1| LysR substrate binding domain protein [Acinetobacter baumannii AB900] gi|301346100|ref|ZP_07226841.1| LysR substrate binding domain protein [Acinetobacter baumannii AB056] gi|301511204|ref|ZP_07236441.1| LysR substrate binding domain protein [Acinetobacter baumannii AB058] gi|301595044|ref|ZP_07240052.1| LysR substrate binding domain protein [Acinetobacter baumannii AB059] gi|332852005|ref|ZP_08433872.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332871758|ref|ZP_08440198.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169149266|emb|CAM87149.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|213056085|gb|ACJ40987.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213986947|gb|ACJ57246.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|332729582|gb|EGJ60920.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332731228|gb|EGJ62526.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 313 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + E+ ++ KP G+LR+ + G + + + EF YP++ ++ Sbjct: 73 ERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YL+ P S ++L Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P D++ L L ++ ++ G+ALLP + Sbjct: 193 NHACLRLVN--PSITPDWHLLNANGESCQIDIGGQLIADNPELLLDVVQQDMGVALLPMF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 D N L I+ + +P VY P R+FI K R W Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|94310330|ref|YP_583540.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354182|gb|ABF08271.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans CH34] Length = 362 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 8/273 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 49 QLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 108 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + VK SG LRI G+ + + F+ +PD+ + L Sbjct: 109 LEDCQRILNDLHNAEASVSAGGVKASGHLRITAPAGFGRKHVAPLVPLFIESHPDVTLTL 168 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCAIRL + SSL+ +L A+P YL P +EL Sbjct: 169 DLSDRVVDLVNEGFDCAIRL-GDLPDSSLVSIRLAENRRVVVASPEYLARAGTPTQPEEL 227 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN + FG W+ D ++ ++ + ++C+ G G+A Sbjct: 228 ARHNCLAFG---ASANVQRGWVFQQDGRATTVKVGGNMECTDGAVLHEWCLGGYGLAWRS 284 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 + V + LV ++++ P ++ +P+ Sbjct: 285 WWEVGQEIASGRLVTVLDEFQAPPIGIHAVFPQ 317 >gi|262172925|ref|ZP_06040602.1| putative LysR-family transcriptional regulator [Vibrio mimicus MB-451] gi|261890283|gb|EEY36270.1| putative LysR-family transcriptional regulator [Vibrio mimicus MB-451] Length = 309 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 144/291 (49%), Gaps = 11/291 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR SFT AA ++ ++++++S+ + LE ++ ++L R R ++LTE+G +L + Sbjct: 14 FAHIARHRSFTKAASEMGITRAALSQHLKALEQQLQVRLINRTTRNMSLTEEGQRLLDIL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +E EL +S V+PSG +RI+ + + L++ +L EFL YP I+++LI+D+ Sbjct: 74 QPSLMSIEQVVNELNDSHVEPSGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELIMDD 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I + D IRL + + + AP Y K P + ++L+ HN Sbjct: 134 GFSNIVAEGVDAGIRLGISLDEHMVAVPITPPLTTAIVGAPDYFKRNGTPQNPEDLETHN 193 Query: 191 LITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + ++ ++ L + D + EP+ + + N S++Q + G G+ D Sbjct: 194 CLAYRFTSSGTIDHWS-LTSPDIEKHTVVFEPKGNAV-FNDDHSMLQAAIQGVGLVKHID 251 Query: 247 YIVKDNPNLVRIMEDVITP---SFTVYFCY-PEALKNTGKLKAFRNFIFLK 293 V+ + N R + V+ P SF ++ Y P K++ +F+ K Sbjct: 252 LWVEKHINEGR-LSRVLAPWCKSFPGFYLYIPSREHMPKKIRVLMDFLIEK 301 >gi|255291946|dbj|BAH90433.1| LysR family transcriptional regulator [uncultured bacterium] Length = 296 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 13/261 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ L+ F +A++ S + AA +L S S++SR+I LE + ++LF H G +LTE Sbjct: 1 MDWNDLKFFLALAQAKSLSAAATRLGTSPSTVSRRIEALELALKVRLFRPHRDGYSLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L ++ + E +G +RI LG+++L L F+ YP I Sbjct: 61 GQSLVPEAELAGTRMRVFERNALEIGDGLAGPVRIEAPELLGRDMLLPALIRFMEDYPAI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L + + ++ + AD IRL +P++ + + R++ I YA+ ++ P + Sbjct: 121 RIELRSSVQPVQLAAEDADLVIRLVRPVRGNYRL-RRVGAIRFGLYASADHVARHGTPGN 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRI-SCLQVNSYLSIMQYCVLGSG 240 ++L +H ++ + EDF +LA G P + L++ S + + G+G Sbjct: 180 PEDLHRHRMVGW-------TEDFAYLAMAAWLSGHCPGLRPSLRLTSLAAQVAAVEQGAG 232 Query: 241 IALLPDYIVKDN---PNLVRI 258 A+LPD+I + P LV + Sbjct: 233 WAVLPDFIARPAGFLPGLVSL 253 >gi|238789797|ref|ZP_04633579.1| HTH-type transcriptional activator aaeR [Yersinia frederiksenii ATCC 33641] gi|238722156|gb|EEQ13814.1| HTH-type transcriptional activator aaeR [Yersinia frederiksenii ATCC 33641] Length = 303 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 97/208 (46%), Gaps = 17/208 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LETE+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQYGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP 214 P M +F+WL RP Sbjct: 181 ------------PSDMVNFSWLEYSVRP 196 >gi|89899253|ref|YP_521724.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343990|gb|ABD68193.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 313 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 137/290 (47%), Gaps = 10/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++ F ++ RSGSF+ AA +L ++ ++S++++ +E +G++L R R + LT +G Sbjct: 9 SEMAFFSLLVRSGSFSAAARELDITTPAVSKRLAQMEARLGVQLLNRTTRRIGLTPEGEV 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + S P G LR+ T+ G++ + + +F YP++QIQ Sbjct: 69 YLEHARRILADIGDMEQLVSNSVAAPKGLLRVNATLGFGRSHIAPLISDFAKRYPEVQIQ 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ D D IR +P + +I R++ + AAP YL P + Sbjct: 129 LQLTVNPPSLTEDAFDVCIRFGEP-PDARMIARRIASNRRLICAAPAYLTRQGTPQVPND 187 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +HN I I + E + W L + R L N + + + G G+ + Sbjct: 188 LAQHNCIC----IRQGEEAYGIWHLRSGQRSETVKVRGTLSTNDGEIAVNWALAGHGLIM 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + L +++ + TP ++ YP++L+ +++AF +F+ Sbjct: 244 RAEWDIAKYLASGRLRQVLANWQTPGADIHAVYPQSLQTAARVRAFVDFV 293 >gi|134293115|ref|YP_001116851.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136272|gb|ABO57386.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 301 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA QL+ +++++S I LE E+G+ L R R + LT+ G + Sbjct: 5 DRFAVFRAVVETGSFTAAAAQLNQARAAVSFNIKQLEAELGVTLLTRTTRRVELTDAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E+ + + G LR+ +T++ G ++ L F+ +P ++++ Sbjct: 65 FYARCVRVLEEAESAIDDARSEHGGMHGVLRVTSTVEYGTMVVAPALHAFMQRHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKNC-----R 178 L +D+ + D AIRL + Q L R L T + AP L Sbjct: 125 LETHATQVDLVRERVDVAIRLGRLEQFQDLPYRGACLATYEVRPVIAPSLLAEAGLSQIG 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + L + + + D + RP +PR+ + S L ++ G Sbjct: 185 SPELLARLPQLGHTRLERIATWTLTDRDGNPHAFRPGAKPRV-VVDNASVLRVLARQ--G 241 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 SG+ALLP+++V+D+ LV + P VY YP K++A+ +F+ Sbjct: 242 SGVALLPEWLVRDDLASGALVDALPGYRFPPQAVYALYPSTAHVPQKVRAWVDFM 296 >gi|167584727|ref|ZP_02377115.1| transcriptional regulator [Burkholderia ubonensis Bu] Length = 292 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 13/266 (4%) Query: 29 LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88 +S + + LE+ G+KL R R L LTE G + E+ + Q Sbjct: 28 MSATMAGNHLRALESRTGMKLLNRTTRRLALTEFGETYYARCQEILRLVSDADRHAQHRH 87 Query: 89 VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148 PSGKLR+ + G +L L ++L YPDI ++L L ++ +D+ D D AIR+ K Sbjct: 88 TLPSGKLRVTAPVSFGNTVLVPALSDYLAQYPDIDVELTLSDRTMDLLDDGFDAAIRIGK 147 Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208 P + L+ R L M A+P YL P EL +H ++F P + Sbjct: 148 P-ADARLVARPLAPYRMMVCASPAYLAAYGTPTHPDELVRHACLSFAVSAPASWKFRQGE 206 Query: 209 AT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVIT 264 T +P G L +N + + G GI + P +++ + N LV + + Sbjct: 207 QTFTAKPSGR-----LTINQGEGLRNAALCGMGIVMQPAVLLEADVNAGRLVPLFGEYEM 261 Query: 265 PSFTVYFCY-PEALKNTGKLKAFRNF 289 PS ++ Y P+ + KL++F F Sbjct: 262 PSRPMHIVYLPD--NRSQKLRSFVEF 285 >gi|114766628|ref|ZP_01445580.1| transcriptional regulator, LysR family protein [Pelagibaca bermudensis HTCC2601] gi|114541168|gb|EAU44221.1| transcriptional regulator, LysR family protein [Roseovarius sp. HTCC2601] Length = 314 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 9/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F A +GSFT AA++L +S S+ ++ LE +G++L R R + +T G Sbjct: 21 DGLRAFVATAETGSFTAAADRLAISNRLTSKYVAELEARLGVRLLSRTTRRVGVTASGEA 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + L+ E+ E +G LRI+ + G+ +QG L F + D+ + Sbjct: 81 LLARAPALLDDLDEMLAEVTEDGRGFTGTLRISAPVTFGEKYVQGMLARFAAPHADLVVD 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D++ + D A R+ + +SL +R+L + A+P YL P + Sbjct: 141 LRLTDAYVDLASEGIDLAFRVGEG-AVTSLKRRRLGALRSCVVASPDYLSRHGRPERPDD 199 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H I + E +W T D ++ S +VNS V G GIA Sbjct: 200 LVAHACI----VDTNRSEPAHWAFTCDSVETAVQVPSRFRVNSAQVARDLAVAGHGIAFC 255 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 P +++ D+ R ++ D +P + + E K+++ +F AR Sbjct: 256 PVFVLGDDLETGRLEPLLPDYDSPRRAISAVWLEGRTLPRKVRSLIDFAVEDAR 309 >gi|293396301|ref|ZP_06640579.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421090|gb|EFE94341.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 310 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 97/190 (51%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ +F +V GS AA +L +S S++S+ + LE VG+ L +R R L LTE G Sbjct: 6 NRMAIFAMVVAEGSLAGAARRLGMSPSAVSQHMRSLEKAVGVPLLHRSTRRLALTEAGEA 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + L E G+LRIATT+ +G L L LL +P + ++ Sbjct: 66 FYPGCEAMLQQAQQAEQRLAELRDTLVGELRIATTVGIGGGPLAEALSPLLLAHPKLSLR 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D++ +D+ D ++R+ + + +++I L M AAP YL P + Q+ Sbjct: 126 ILADDRVVDMIEQRVDISLRVNRQLADATMIAHPLSEWPMVLCAAPRYLSQYGVPETPQQ 185 Query: 186 LDKHNLITFG 195 L H IT G Sbjct: 186 LVHHRWITGG 195 >gi|259907349|ref|YP_002647705.1| LysR-family transcriptional activator [Erwinia pyrifoliae Ep1/96] gi|224962971|emb|CAX54452.1| LysR-family transcriptional activator [Erwinia pyrifoliae Ep1/96] gi|283477171|emb|CAY73078.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia pyrifoliae DSM 12163] Length = 292 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 19/287 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L +SS+S++IS LE +GI+L R R L LT G + Sbjct: 8 MALFALVAGCGSFTAAAVRAGLPKSSVSQRISQLEQALGIRLINRTTRQLNLTFAGERYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + ++ PSG+LRI + +G LL F YPD+ +++ Sbjct: 68 VHCQEMLQASERAGVVIERLRDNPSGRLRITSPAGIGATLLARVNTAFQHKYPDVTLEVS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ++ D A+R +P Q SSLI R++ A+P YL + ++L Sbjct: 128 ISDEMCNLVQSRFDVALRTGRP-QDSSLIGRRIGYCQRLLVASPDYLADYPALAHPRQLS 186 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIA 242 H I L+ + E + WL + + L + C L S GI Sbjct: 187 DHRCIAHRAWNEWLLKRNEEYYRWL-----------LPPTHMTDNLVYARECALSSGGIT 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP ++ + LV+++ + ++ YP N+ L F +F Sbjct: 236 LLPRFLSGE--KLVQVLPEWEVEGNELWLVYPGRKLNSPALSRFVDF 280 >gi|222149513|ref|YP_002550470.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221736495|gb|ACM37458.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 21/291 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD R F +A++GSF+ AA LH+ +++ R+++ LE ++GIKL R AR + LT +G Sbjct: 8 NWDDYRCFLTLAKTGSFSRAARLLHVDHTTVGRRVAALEVDLGIKLVERLAREVRLTAEG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + V + + + +G + I+ L LL L YP+I+ Sbjct: 68 HDLATLGLPVEEAMASVERAAAGGGAALAGPVHISAPPGLASLLLAPKLVSLHRQYPEIK 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + D +++ AD A+RL +P+ S+ L+ RKL I +A+ Y I Sbjct: 128 ITMSSDKDFANLNRREADIALRLSRPL-SNGLVARKLRDIPFFFFASHTY--------DI 178 Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 E D IT+ D++P+ +WL + IG R L+ + S +Q G G Sbjct: 179 AE-DDWEFITYLQADDILPQQ----SWLM---QHIGS-RTIALRCSDAASQVQAAASGLG 229 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +ALLPDY+ ++ L + + P ++ + +++ +++ +F+ Sbjct: 230 VALLPDYLGYNDTRLRKCPSRLTPPRRELWMVVHDDIRHAPRVRVVLDFLI 280 >gi|161521528|ref|YP_001584955.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352303|ref|YP_001947930.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345578|gb|ABX18663.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189336325|dbj|BAG45394.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 303 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 130/294 (44%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F R SFT AA +LHL+QS+ISRQI LE +G LF R R L LT G + Sbjct: 12 LVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSG--KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++V+H L T E +KP G +L IA + + L L EF YP+I+++ Sbjct: 71 --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPEFRAAYPNIKLR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI+ + +S D + + + R+L + AP YL L + Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L L+ D + M W +DR +P+ + +NSY I+Q +LG G++L Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFDQNDIDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 243 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 Y++ + LVR+ + + Y P + F ++F +A Sbjct: 244 GWRYMIDACIEAGVLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297 >gi|325124090|gb|ADY83613.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 297 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/310 (24%), Positives = 140/310 (45%), Gaps = 34/310 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L F V+AR+ + T+AA + + S+++R+I LE +G LF R A G LT Sbjct: 5 MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 64 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E +++++ G++RI T G L L EF + Y Sbjct: 65 LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD + + +P +I R L + Y + +YL Sbjct: 120 PLLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSKNYLAQNPP 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228 ++++L +H + + +D + P + CL+ +S Sbjct: 179 IRALEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 222 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L+ G+G+A+LP ++ D L ++E + + T + L++ ++K + Sbjct: 223 LAQQIAVSAGAGLAILPKFLADDKQELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 282 Query: 289 FIFLKARDWK 298 ++ +A ++ Sbjct: 283 YLRKQADKYQ 292 >gi|264680046|ref|YP_003279955.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210561|gb|ACY34659.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 314 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 2/190 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F V +G FT AA++L +++S++ + ++ LE +G +L R+ R TLT +G Sbjct: 8 EGVSTFVQVVEAGGFTAAAKRLGVTRSAVGKAVARLEARLGSRLLQRNTRTQTLTAEGQI 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L+ + +L ++P G+LR++ GQ + L LYP + I Sbjct: 68 YYERCTRALKELDAAEADLDSGRMEPIGRLRVSVPEGFGQLCVAPILLNLTRLYPQLSID 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ +D+ + D AIR+ P+Q S +L R L T H+ A+P YL P ++ Sbjct: 128 LSFGDRTVDLIEEGFDLAIRI-GPLQDSGTLSARLLGTQHISVGASPAYLARHGTPSKLE 186 Query: 185 ELDKHNLITF 194 ELD H +I + Sbjct: 187 ELDGHAVIGY 196 >gi|329905937|ref|ZP_08274303.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gi|327547399|gb|EGF32226.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 12/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF A L +S + ++R ++ LE +G +L R R L+LTE G Sbjct: 7 MRVFAKVVEQGSFAGAGLALDMSNAVVTRHVADLEKHLGARLLNRTTRRLSLTETGLIYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T ++ ++ S KP+G LRI + + GQ L L + LL+P++++ + Sbjct: 67 ERTKQILQDIDDADAMASSQSNKPAGTLRIYSHLGFGQLQLAQLLPRYALLFPEVKLDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D + + +S+I R++ + A+P Y++ PL +++ Sbjct: 127 LSDHTVDLVEEGFDIGMFIELQKFDASMIARQIGLSDIILCASPDYIRLHGTPLEPEDIS 186 Query: 188 KHNLITFGDLIPKCMEDF--NWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H + F E +W ++ R + P S L N + Q + G GI + Sbjct: 187 QHVCLNF------AYEQLRHHWSLIINKRSVDVPITSKLVSNDGNLLRQCALAGMGIVIR 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + D+ LVR++ + V YP + + K+++F +FI Sbjct: 241 SSFTLGDDLSSGRLVRLLPQHHLGTLAVTMVYPSRRQLSAKVRSFIDFI 289 >gi|188583535|ref|YP_001926980.1| LysR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347033|gb|ACB82445.1| transcriptional regulator, LysR family [Methylobacterium populi BJ001] Length = 322 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 134/292 (45%), Gaps = 22/292 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VAR SF+ AA L + SS+SR+I+ E+ VG++L R R L LT G Sbjct: 10 MALFVEVARRKSFSQAAAALGMPISSLSRRITMFESTVGLRLLDRTTRKLALTSYGEAYL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQIQL 126 S + + + T ++ + PSG L+IA D L G + EF L+ I + + Sbjct: 70 AQVSRLVDEAQRTFDDMMAVAKGPSGFLKIAAPPDFWVLRHLSGVITEFSALHEHIHVHV 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L +D+ D D A+ + +P + +SLI RK+ + + AP YL P++ +L Sbjct: 130 DLKPAPVDLVSDNYDLAVAIEEP-RETSLIVRKVAEVENGIFGAPAYLAERGAPMTPFDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + H +I +P W TV +G P +SC NS ++ V G G+ Sbjct: 189 EAHQVI-----VPMQGTSATWTLTRGSETVATTVGGP-LSC---NSLSLARRFAVAGQGL 239 Query: 242 ALLPDYIVKDN----PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + I DN L R++ D P+ VYF L K ++F +F Sbjct: 240 TRA-NVINVDNDLTTGRLQRVLPDWSLPATPVYFVTTSRLL-PAKARSFIDF 289 >gi|326403474|ref|YP_004283555.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050335|dbj|BAJ80673.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 315 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 133/293 (45%), Gaps = 10/293 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA + SFT AA +L +S+ ++S+ IS LE +G L R +R L+LTE G Sbjct: 6 DLEAWALFAKVAETRSFTRAASELGISKPTVSKAISRLEARIGTALLNRTSRRLSLTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + R + + E + E + + PSG +R+ + G + L E YP++ Sbjct: 66 RRAARSAGRILTEGEALETEAMDQATAPSGLVRLTAPMSFGIAHVAPLLPELFETYPELS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L ++ +D+ D AIR+ + S+L R++ + AP Y + P Sbjct: 126 VDLHLADEVVDLVGGGFDIAIRIAA-LPDSALRTRRVCRVRRLLVGAPEYFERRGRPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L KH + + L F VD G P L+VN+ ++ V G G+ Sbjct: 185 GDLAKHVCLGYAYLPSSSRWHFRHATGEEVDVVPGGP----LRVNNADALRPMLVAGRGL 240 Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 A+ P+++ ++ R+ M D P + P + ++ A +F++ Sbjct: 241 AVQPEFMAAEDIAAGRLEVAMADWSMPPIALNIVTPPSGLRPARVTAVIDFLW 293 >gi|283835609|ref|ZP_06355350.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] gi|291068821|gb|EFE06930.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] Length = 296 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 24/299 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V SGSFT AA +L +S + + I+ LE ++G +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVESGSFTSAATRLEMSAVMVGKYITQLEAQLGTRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ + P+G LRI+ G ++ FL +P++ Sbjct: 62 GRVYFEEARRVLEQVSIAERSVERLRLAPAGTLRISAPTSFGACVISPLAATFLQAWPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L L N+ +D+ + D AIR+ I + ++ + L M A+P YL P + Sbjct: 122 RIELDLTNRMVDLVNEGVDLAIRI-GDIHQTDVVAKYLCPYRMAICASPDYLARHGTPRT 180 Query: 183 IQELDKHNLITFGD-------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 +L H ++ ++P + W R + L+ N + Sbjct: 181 PADLVDHLCLSHTVWTARNEWMLPGAAGEVRW----------KRDAILRCNDGHGLRMAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 V G+G+ L P+ ++ + LVR++E ++ + + L+ KL F + Sbjct: 231 VAGAGLLLQPEVLLAEELATGRLVRVLEAFTPQPRPIHLLWRQDLRALPKLTRFVGHVL 289 >gi|152979317|ref|YP_001344946.1| LysR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150841040|gb|ABR75011.1| transcriptional regulator, LysR family [Actinobacillus succinogenes 130Z] Length = 295 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/271 (26%), Positives = 134/271 (49%), Gaps = 5/271 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V SGSF+ AA+QL+L S++S+ + LE ++G +L R R L LT +G + Sbjct: 7 LQVFAHVVESGSFSKAADQLNLHVSAVSKAVKYLENQLGSRLLNRTTRSLKLTAEGEAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +LE T +L S + GKLRI + + L EF YP+IQ+ L Sbjct: 67 EKAQFLLAELEETFQDLSGVSQQAKGKLRIEMPTAIAPFMF-AKLPEFQRQYPEIQLVLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ++ D DC +RL + + +S I R+L + M AAP Y+ P ++ +L+ Sbjct: 126 ANDGVSNLIDDGLDCTLRLGE-LADASYIARRLTDVAMQTCAAPSYVAAHGTPETLADLE 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+++ + + + + + QVN +++ + G GI +P+ Sbjct: 185 SHHIVHYVSGSQRKVLPWQFRKKSGETDRFKAAHATQVNDSNALLFAALAGLGIVQMPEL 244 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 +++ N LV ++ + +P+ ++ YP+ Sbjct: 245 MLRPYLANGELVPVLTALQSPTRPLWLIYPQ 275 >gi|160876657|ref|YP_001555973.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|160862179|gb|ABX50713.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|315268857|gb|ADT95710.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 299 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 21/283 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +++ D +R+F+VVA+ GSF AA+ L + S++SR+I+ LE +G++L +R A + LT Sbjct: 3 LNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ +L EL + GKLRI+ I+ L +L F YP Sbjct: 63 ATGQRYLERCGPLFIELNHVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I I L L N +ID+S + D A R+ +P + I R L TI A Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISF-VLCASTSATQWHTL 180 Query: 181 LSIQELDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ 233 +I+ L++H +I + + +DF + EPR + L V+ Q Sbjct: 181 QAIEALEQHPVIIAKPVKTWRLQHNITGQDFEF---------EPRGNIKLAVDDMAIASQ 231 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 V G GI LLP + + + LV+I+ + T Y Y Sbjct: 232 AVVAGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMY 274 >gi|77459375|ref|YP_348882.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383378|gb|ABA74891.1| LysR family transcription regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 305 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 20/302 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F V A+ GSF+ AAEQL + S++++ ++ LE+E+G +LF R R + LTE G Sbjct: 7 LKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLESELGARLFERSTRRILLTEIGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +L+ E+++ G L+I + G+ L FL YP I +Q+ Sbjct: 67 ETARQVLQRLDEASEEIEQLQHGLRGSLKITAPLAYGRAFLDQVCDGFLQQYPQISLQVD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ D A+R LI R + + + +P YL P++ Q LD Sbjct: 127 LCDEFVNLLESGYDLALR-EGHDDLPGLIARVVGSNRLALCGSPEYLARKGLPVTPQTLD 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H + + P +F W A D + +P L+ ++Y ++ + G G+ Sbjct: 186 QHEWLLYRH--PLLSREF-WWAERDGQRLSLAQPTAPLLRSDNYDLLLASALAGRGLLHT 242 Query: 245 P-----DYIVKDNPNLVRIMEDV-ITP-SFT--VYFCYPEALKNTGKLKAFRNFI--FLK 293 P YI + LVR+M D I P SF + YP + T K+ AF ++I FL Sbjct: 243 PLWSAAPYIA--DGRLVRVMADYEIDPDSFGPHILAVYPSHRRATAKVVAFIDYIAGFLA 300 Query: 294 AR 295 R Sbjct: 301 ER 302 >gi|117920360|ref|YP_869552.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117612692|gb|ABK48146.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 303 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 29/287 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + LR+F +V GSF AA + + ++S+SR+I LE ++G KLF R R L+LT Sbjct: 1 MNVRINDLRLFLLVVELGSFAAAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID---LGQNLLQGNLKEFLL 117 G H+ E+ +LE+ ++ P+G +++ D + +LLQ +FL Sbjct: 61 PTGENYHQQLMEIIPRLESLNESVKNQRNMPTGSVKLGLVGDADVVTHHLLQ----DFLK 116 Query: 118 LYPDIQIQLILDNKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 YP I ++ + N ++Y D I + I+ +S + R L+ + YA+P Y+ Sbjct: 117 NYPLITLETHVSNLGYHDILNYGLDACIHIGN-IKDNSFVARPLMRVCRKLYASPDYIAA 175 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 P S+ +L +H L+ + L +ED FN +GE R+ V++ ++ Sbjct: 176 HGMPTSLDDLSQHALMIY-RLQNGELEDRWKFN--------LGEYRVKSRLVSNSSQYIR 226 Query: 234 YCVL-GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY-----FCYP 274 + +L G+GI+LL + V ++ L ++E + P + VY YP Sbjct: 227 HAILSGAGISLLSELSVVEHLQLGNLVE--VLPEYEVYVDDAWLVYP 271 >gi|149187638|ref|ZP_01865935.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] gi|148838518|gb|EDL55458.1| transcriptional regulator, LysR family protein [Vibrio shilonii AK1] Length = 299 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 140/297 (47%), Gaps = 21/297 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA SFT AAE+L LS+ +SR ++ +E + +L +R R ++LT G + Sbjct: 7 MRSFVEVAHCASFTKAAERLGLSRLQVSRHVNEVEQWLEQRLLHRTTRKVSLTTAGEQAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + H ET+Q+EL P SG +R+A I L QN+L +++F +P++ IQ Sbjct: 67 ARCESILH--ETSQLELSSQPQTPYLSGTVRVAAPIGLTQNILLDAVEQFTEQHPNVVIQ 124 Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ + D A+R KP + +LI RKL++I A+ +Y++ EP Sbjct: 125 LFASDSFAELVDERIDIALRYTNKP--ADNLIARKLMSIDSLICASKNYIEKHGEPTRFD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L HN +E +W +S + N +++ GI L Sbjct: 183 DLSNHNCFLH-------LERTSWEGVKGGETVSVNVSGNITANDLGVLVKAAQRDKGIVL 235 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP + ++ +L I++D P+ T++ Y L + +L R FI A W Sbjct: 236 LPCDLANPLIESGSLTPILKDYAIPTSTLWAVY---LSRSYQLPIVRQFIDFLADFW 289 >gi|59714331|ref|YP_207106.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|59482579|gb|AAW88218.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 320 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 1/181 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSFT AA + S++S+QI LE E+G++L R R +LT G + Sbjct: 5 NQLSLFIDVVQQGSFTKAAALHDMDNSALSKQIKKLEAELGVQLLNRSTRTFSLTPAGEE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ L+ + P G++RI + +GQ LQ + +F+ YPD+++ Sbjct: 65 ILEQAYQLVGSLDNVKSIADSYQAVPKGRIRITAPLHIGQGYLQPVISQFMTTYPDVEVV 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L++D+K DI ++ D A RL + + SSLI +K+ I A+ ++ EP + +E Sbjct: 125 LMMDDKRSDIISEHFDVAFRLGR-LDDSSLIAKKVADIRGVILASHSLIERFGEPSTPEE 183 Query: 186 L 186 L Sbjct: 184 L 184 >gi|329123509|ref|ZP_08252073.1| LysR family transcriptional regulator [Haemophilus aegyptius ATCC 11116] gi|327471091|gb|EGF16546.1| LysR family transcriptional regulator [Haemophilus aegyptius ATCC 11116] Length = 305 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIDY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNPVNWVGSRINQTQRFKIQSKVVSNSAFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|312959076|ref|ZP_07773595.1| transcriptional regulator [Pseudomonas fluorescens WH6] gi|311286846|gb|EFQ65408.1| transcriptional regulator [Pseudomonas fluorescens WH6] Length = 322 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA QL + +++SR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVADAGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ T +GQ+ + + + +PD+ L Sbjct: 66 LLRCEQILAYVEAAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRRTHPDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N+ D+ + D +I L + S + ++L + A A+P Y+K +L Sbjct: 126 TLANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIACASPDYVKAKGCAHRPHDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 H + L+ ++ W T + P G+ + S VNS ++ G G+ Sbjct: 186 LNHACLR---LVSPVVQLDKW--TFNGPEGQESVAINTSPFLVNSADAMKTAITSGMGVG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP Y + N LVR+M + + +Y YP K+K + ++ Sbjct: 241 LLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291 >gi|221065093|ref|ZP_03541198.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220710116|gb|EED65484.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 314 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 138/299 (46%), Gaps = 22/299 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +A GSF A L S +S+++ LE +G++L R R L T +G + Sbjct: 10 DELATLLALAEQGSFAAAGRSLGRHPSVLSKRMQALERRLGVRLVERTTRQLHFTSEGLR 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L S+ H + + E + + + G+LR++ +G+ + L EF L YP++ ++ Sbjct: 70 LVEKVSQASHLIREAEQEAAQGAQETRGRLRLSIPASMGRRWISPMLAEFSLAYPEVVLE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +DI + D AIR+ + S L+ +L + A+ YL+ P ++ Sbjct: 130 VEYSDRIVDIVGERFDAAIRIGH-LSDSRLVAARLCDQYRLLCASARYLERHEAPRRPED 188 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEP--------RIS-CLQVNSYLSIMQYC 235 L +HN + + L+ DF W + RP G R+S + N +++ Sbjct: 189 LARHNCLGYTGLL-----DFPQW--RLVRPAGRRSARVVESVRVSGSMLSNDNEALLHAA 241 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI D+ + + LVRI+ + + +Y P NTG +KAF+ ++ Sbjct: 242 LKGVGIIAGSDWHLVPSIHAGELVRILPQWTLGEAGGIYLVRPSGQYNTGAMKAFKPWM 300 >gi|73539894|ref|YP_294414.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72117307|gb|AAZ59570.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 302 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 18/296 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V GSF+ AA+ L ++ S++SR +S LE +G L R R LTE G Sbjct: 7 NAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTELGHA 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + + + +P G LR++ ++ GQ L L L YP +++Q Sbjct: 67 VYAACARMSAAAREVTALGTDHTGEPHGVLRVSASVVFGQAWLAPRLPALLERYPALELQ 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D AIR+ + + L+ R L + A+P +L+ P S +E Sbjct: 127 LTLVDRMVDLVEEGLDVAIRIAREL-PPGLVARPLRPVRYQLVASPGWLRLHDAPASPEE 185 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L + FG+ + TV P PR + VN+ ++I+ +G Sbjct: 186 LPHTRCVYLGYGAFGERWSLRHKTSGDDVTVRIP---PRFT---VNNSMAIVAMVERDAG 239 Query: 241 IALLPDYIVK---DNPNLVRIME--DVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290 I L+PD+ + LV +++ D++ P T Y Y K++AF +++ Sbjct: 240 IGLVPDFSAAAGLADGRLVTVLDDWDILEPYIGTAYAVYTPTRHVAPKVRAFVDYL 295 >gi|330811622|ref|YP_004356084.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379730|gb|AEA71080.1| Putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 305 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 139/299 (46%), Gaps = 16/299 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + V+ V +GS T AA+ +S + + + LE +G++L R R LTE GS Sbjct: 4 FQAMTVYVKVVETGSLTAAAQACEMSTTMVGNHLRALEQRLGVRLINRTTRRQRLTEFGS 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ EV + ++ +++ +P+G LRI + G L L EF + +++ Sbjct: 64 AYYQRCLEVLGLVADSERLAEQTQGEPTGTLRITAPLTFGSERLAPALAEFSQRFAQVKL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L N+ +D+ D AIRL P LI R L+ + A+P YL P Sbjct: 124 DVVLTNQRLDLLEHGFDVAIRLGHP--DPKLIARPLMDYTLTICASPAYLARRGTPEKPT 181 Query: 185 ELDKHNLITFGDLIP---KCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 +L +H+ ++F + +D +W ++ P GE ++ + +NS + + + G Sbjct: 182 DLQQHDCLSFAYSAADEWRFAQD-HW--PINGPEGEIKVPVNGPMLINSSSGLHRAALAG 238 Query: 239 SGIALLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ +LPD +V KD +LV +++ P + Y + KL++F F K Sbjct: 239 MGVVMLPDALVAQELKDG-HLVTLLQGYQLPHRPMSLMYAQDRYRLPKLRSFVEFALEK 296 >gi|326317865|ref|YP_004235537.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374701|gb|ADX46970.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 305 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V R SF AA +L S + +S++I LE E+ +KL +R R + +TE+G + Sbjct: 8 DDLRVFTAVVRKASFAEAATELGASPAYVSKRIRLLEEELAVKLLHRTTRRVAVTEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + E+ + +P G LR++ + G+ ++ + + +P +Q++ Sbjct: 68 VFHWAQRILDDWDQLLQEVAVTRREPRGLLRLSCSFGFGRRIVAPAVSRLVERHPGLQVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D++ + D IR+ I + LI R+L H AAP YL P ++ + Sbjct: 128 LEVFDRLVDVAGEGFDLDIRVGDEI-APHLIARRLAGNHRVLCAAPAYLARKGMPRAVDD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------------LQVNSYLSIMQ 233 L H+ + + D P G R+ L N +Q Sbjct: 187 LASHDCLVIKER--------------DHPFGVWRLRSGAADRTVKVRGPLSANHGEMAVQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V G GI L + V + LVR++ + V+ YP L+ + K++ F+ Sbjct: 233 WAVDGRGIVLRSLWDVGPDLAAGRLVRVLPE-WQQEANVWAVYPTRLERSAKVRVCVEFL 291 >gi|194472746|ref|ZP_03078730.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358569|ref|ZP_02657497.2| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194459110|gb|EDX47949.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333194|gb|EDZ19958.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 300 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYHAAPLPVTLHYP 275 >gi|171315636|ref|ZP_02904870.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171099168|gb|EDT43941.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 303 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 19/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE +G++L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLGVRLLQRTTRRVALTAEGTTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ + ++ P G +R+ N + L++F YPD+++ L Sbjct: 67 ERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALQDFHERYPDLRVVLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S +L Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRVGELAQINCASPAYLARHGTPRSPDDLP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D G + S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGALQTVKMRSVVAVNSSQAYLACCLAGLGLIQ 242 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P + ++ +LV ++ + V +P +G+ A R IF+ DW Sbjct: 243 APREGLAPLLESGSLVEVLPEWHAEPLPVSVVFP-----SGRHLAPRVRIFV---DW 291 >gi|157149122|ref|YP_001456441.1| hypothetical protein CKO_04961 [Citrobacter koseri ATCC BAA-895] gi|157086327|gb|ABV16005.1| hypothetical protein CKO_04961 [Citrobacter koseri ATCC BAA-895] Length = 299 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 133/293 (45%), Gaps = 5/293 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE L + S+SRQI LE +G +L +R R + LT+ G + Sbjct: 7 MQLFIRVAELESFSRAAETSGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ Q SGKLR+ + + +NL+ L FL YP I+++L Sbjct: 67 ERAKDLLTNLDELDGLFQHDPASISGKLRVDMPVGVAKNLVIPRLPAFLQQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + + A+P YL P + +L Sbjct: 127 SSDRLVDLIREGFDCVVRV-GALKDSGLIARPLGKLSVINCASPQYLARFGYPEGLDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + + F +AT + L VNS + C+ G GI +P Sbjct: 186 SHAVVHYSVNLGTRPQGFE-VATANGTQWIKTGGILTVNSTETYHAACLAGLGIIQVPRI 244 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 V++ L+ I+ V YP + ++ F ++ +D+ Sbjct: 245 GVREALRAGTLIEILPQYRADPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKDY 297 >gi|254255286|ref|ZP_04948602.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa AUO158] gi|124901023|gb|EAY71773.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa AUO158] Length = 371 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 10/231 (4%) Query: 17 SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76 +GSF AA QL ++ +++S+ ++GLE +G++L R R L LTE+G R Sbjct: 72 AGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEAFLRHARIALET 131 Query: 77 LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136 L+ + P+G++RI+T+ G N + L L YP + +++ D++ IDI Sbjct: 132 LDAAIDTVSAQRAVPAGRVRISTSAAFGHNHVLPALPALLARYPALSVEVDFDDRVIDIV 191 Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT--- 193 D D A+R I S+L+ R + ++ A+P YL N P + L H LI Sbjct: 192 RDGYDIAVRGGN-IPDSALVTRPICRLNTVLVASPDYLANHGVPETPDALHAHRLIARRF 250 Query: 194 -FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 G + P D + T+D P G+ + L +++ S++Q GIA Sbjct: 251 LSGQVAPWNFTGDDKSITTID-PSGK---AMLTLSAPESLVQAACDSVGIA 297 >gi|91778427|ref|YP_553635.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691087|gb|ABE34285.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 297 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 146/302 (48%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AA+ L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 8 NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E +I L+ + + L++ T + + + F YP++ +Q Sbjct: 68 LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQAEYPELHVQ 122 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D ++ D AI +Q+ L + +L + AP LK+ +P Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGADVQAVPLFEERLTPV-----CAPDLLKD--KP 175 Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLATV------DRPIGE----PRISCLQVNSY 228 L+ + +L +H L+ + D+ WLA V + P+ + P L + + Sbjct: 176 LAELADLARHTLLH----PTRDHRDWKMWLARVTEMGAANAPVIDAEHGPSFDTLDMATN 231 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 ++ + V S +AL+ + + LVR + V+ + YF YP+++ + KL FR+ Sbjct: 232 AALQGFGVAISDLALIDEDVAAK--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLNLFRD 289 Query: 289 FI 290 +I Sbjct: 290 WI 291 >gi|121604202|ref|YP_981531.1| LysR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593171|gb|ABM36610.1| transcriptional regulator, LysR family [Polaromonas naphthalenivorans CJ2] Length = 340 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 1/183 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F V +G+FT AA + L + +++R I LE E+ KL R R +T+T G+ Sbjct: 4 FSAMQAFVRVVEAGTFTKAAYSMGLPKPTVTRLIQELEKELDTKLLNRTTRKVTVTVDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + S + ++ + + + P GKL++ LG ++ L +F YPDIQ+ Sbjct: 64 AYYEQASRLLGEVHELEASMSRAKASPRGKLKVDIPSSLGMAVIIPALPDFYARYPDIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + ++ +D+ + DC IR + I S++ R++ ++ + A+P YLK PL Sbjct: 124 ELGVSDRPVDLIAENVDCVIRGGE-ITDQSMVARRIGEFYIMSCASPAYLKRHGTPLHPS 182 Query: 185 ELD 187 ELD Sbjct: 183 ELD 185 >gi|84386521|ref|ZP_00989548.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] gi|84378626|gb|EAP95482.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] Length = 304 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 17/291 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +A + + + A ++L LS S I LE +G +L +R R ++LTE+G Sbjct: 4 EHLKLFVRLASTHNISQAGQELGLSPPVASIHIGKLEESLGARLVHRTTRKVSLTEEGMA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +E + + P G LRI+ G+ + LK FL YPD+ + Sbjct: 64 FLPHAKQILLSVEAGVASVGTGNELPKGVLRISAPSSFGRMHVMPALKGFLAKYPDLSVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L + +D+ D AIR +Q+SSLI RKL T A+P YL P + ++ Sbjct: 124 ISLSDSIVDLVDGGFDVAIR-NAELQNSSLIARKLSTDKRILCASPEYLAGHGHPKTPED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L +H I L W T D P G+ I ++V+ ++ CV G GIA Sbjct: 183 LKQHQCINQTGL-------EGW--TFDTPEGDVTIKKKGAIRVDHGEAVRDVCVDGLGIA 233 Query: 243 LLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 + +I +LV ++ D + ++ YP A K++ F ++ Sbjct: 234 MCATWIAYKQLAEGSLVEVLPDYPLKDEAAIWAVYPSAQLLAPKVRVFIDY 284 >gi|117924083|ref|YP_864700.1| LysR family transcriptional regulator [Magnetococcus sp. MC-1] gi|117607839|gb|ABK43294.1| transcriptional regulator, LysR family [Magnetococcus sp. MC-1] Length = 315 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/301 (24%), Positives = 133/301 (44%), Gaps = 27/301 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V R G F+ AA + ++ +SR+++ LE +G L R R + LTE G Sbjct: 3 DLNDLAFFAAVVRYGGFSAAARATGIEKTRLSRRVAALERRLGASLLQRSTRMIALTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + V + + +P G++RI+ + L QN L L ++ +P + Sbjct: 63 ERFYERCQVVIEGAQGAYESIDALKAEPMGRVRISAPVVLAQNYLAPILPAYMAAHPKVT 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L ++ ID+ D A+R+ I+ S +L+ R++ A+P +L+ +P S Sbjct: 123 VHLDATDRVIDLLEGRVDVALRVVAQIEDSPNLVAREVAPTRRIMVASPAFLQAHGQPTS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDF----------NWLATVDRPIGEPRISCLQVNSYLSIM 232 + L + +I C D N A + G PR+ + L Sbjct: 183 LLVLKEMAVIC-------CHADLHEGRSRWVLRNGAAMQEGVQGSPRLVADDMRVQL--- 232 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V G G+ALLP+ +V L+R++ + T ++ YP + G L + R+F Sbjct: 233 KAAVHGIGVALLPEPVVAAELRAGKLMRVLPEWATAERMIHVIYP---RPRGMLPSVRSF 289 Query: 290 I 290 I Sbjct: 290 I 290 >gi|91225774|ref|ZP_01260803.1| probable transcriptional regulator [Vibrio alginolyticus 12G01] gi|91189663|gb|EAS75938.1| probable transcriptional regulator [Vibrio alginolyticus 12G01] Length = 294 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 25/290 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA S F+ AA+QL S S +SRQ++ LE +G+ L R R ++LTE G ++ Sbjct: 10 FVTVAESLGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTEAGQAYYQQC 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 E+ L+ +L + SG LR++ +N + L F +P++ +++ + Sbjct: 70 KELVIWLQQANEQLTTQQTQLSGTLRVSAAGAFSENHVAPALMAFAKQHPNLTVEINFNT 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++ D D AIR + + S L+ RKLV M A A+ YL P ++L +H+ Sbjct: 130 SMVNFIEDGFDFAIRYGR-LSDSGLVARKLVDRPMAATASQRYLDEHGLPTHPEQLKRHS 188 Query: 191 LITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248 I + WL D +P+ ++ + N+ +++Q C G G+A LP Sbjct: 189 CIIANKDV--------WLFEKDGKPLDGVKVQGRWKSNNAHTVLQACAEGLGVAYLPKSS 240 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 D + LV I+E + + Y R+F+ L+AR Sbjct: 241 FNDAISSGRLVPILEPYWGSGNSSWIVYQN-----------RHFLPLRAR 279 >gi|254504429|ref|ZP_05116580.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222440500|gb|EEE47179.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 310 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 12/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F ++A GS AA + +S +++S +++ LE G+ LF R R ++LTE+G Sbjct: 4 DNLRLFMIIAEKGSLAAAARETGISTTTVSERLAALEAHYGVVLFNRTTRSISLTEEGRT 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V ++ ++ + SG +RI+ +DLG++++ + F P + I+ Sbjct: 64 LVNGARAVLIEVADLDTRIRHGAETLSGLIRISAPVDLGRSIISRAISAFTEENPAVSIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ D A+R + S+L R L + AAP YLK P + ++ Sbjct: 124 LSLSDGYVDLVGQGFDMAVRFGN-VTDSTLRVRSLGSFQRLICAAPEYLKRHGTPKTPED 182 Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L HN ++ FG+ + E F + R + R+ VN I + + G GI Sbjct: 183 LMNHNCLVMRFGETLDSVWE-FGKKSKKKRVTVRGSRV----VNDGWLIRSWALAGHGIV 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 L + V ++ LV ++ + + P + +P ++ AF Sbjct: 238 LKSELDVAEDIRSGALVSLLSEHLPPPNPLQMMFPPGRAQPRRVTAF 284 >gi|190575025|ref|YP_001972870.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012947|emb|CAQ46579.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 14/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA GSF AAE L LS + + I LE +G++L R R +LT+ G Sbjct: 7 LRTFAKVAEVGSFAAAAEALDLSPQLVGKHIQALEQHLGVRLLNRTTRKQSLTDFGQAYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E + + + +P G+LRI+ + G + L + ++ YPD+Q+ L Sbjct: 67 ARARVILEEVEGAEELAEVARGRPMGRLRISAPVTFGVHALGPAVVAYMQQYPDVQVDLN 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N +DI D D R + S L+ R+L + A+P YL + +L Sbjct: 127 LSNSLVDIVEDGYDLVFRTGD-LADSGLVARRLGPYPLVLCASPDYLASRPAITHPNDLS 185 Query: 188 KHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H + F I + F + TV P S VN ++ V G G+ L Sbjct: 186 RHECLGFAHSIIRTRWSFRDADGSVLTV------PVSSRFMVNQAEPLLTAAVGGLGLIL 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P ++ LV ++ D + S + YP + T KL++F +F Sbjct: 240 QPYEMLAAALARGELVEVLPDHVPVSTWINLVYPRDRQLTPKLRSFLDF 288 >gi|87200778|ref|YP_498035.1| LysR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87136459|gb|ABD27201.1| transcriptional regulator, LysR family [Novosphingobium aromaticivorans DSM 12444] Length = 302 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 134/299 (44%), Gaps = 12/299 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +R+F VAR SF AA +LH+S +++R ++ LE +G +L R R + +TE G+ Sbjct: 4 WQSMRIFAEVARHSSFAEAARRLHMSAPAVTRAVAALEEHIGTRLLVRSTRLVKVTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + ++ + S PSG L + G+ + L E+L YP + Sbjct: 64 RYYADCQRILAEIAEAEAMAAGSYATPSGTLTVTAPAMFGRMYVLPILTEYLDRYPQVIG 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +++ + D A+R+ + SS+I ++ + + AP YL+ P + Sbjct: 124 RTLFVDRPVNLIEEGVDLAVRIGH-LTDSSMIATRVGSSRLVVVGAPDYLREHGVPENPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L + + W D + EP + C N+ + + + G G+A Sbjct: 183 DLGRFRIAAST----AAWASPEWQFANDVKVRVEPALLC---NTNDAAINASLAGWGLAR 235 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + DY V + L ++E P F ++ +PE L K++AF + K R + Sbjct: 236 VLDYQVGAAIADGRLQVVLESHEPPPFPIHVIHPEGLHAPAKVRAFIDLAVAKLRSSRL 294 >gi|330962434|gb|EGH62694.1| putative transcriptional regulator protein, LysR family [Pseudomonas syringae pv. maculicola str. ES4326] Length = 298 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 7/270 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA+ SFT AA +L +SQS++S + LE +G++L R R ++ TE G +L Sbjct: 9 LLAFLAVAKERSFTKAAARLGVSQSALSHTVRSLEARLGLRLLTRTTRSVSPTEAGERLI 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E L + P+GK+RI + +++ L FL YPDI +++ Sbjct: 69 QKVGPHFDEIEIELAGLSDLRDTPTGKIRINAMDHVLDVIIRPVLNTFLPKYPDISVEVC 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D +DI+ + D +RL + + + R + + +P Y + P + ++L Sbjct: 129 CDYSFVDIAAEGFDAGVRLGEAVADGMIATRIGPDMRLSVVGSPAYFEGRNRPETPRDLT 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 H +P + W T D R++ + N ++ + G G++ +P Sbjct: 189 SHRCNNL--RLPTNGGLYTWEFTKDGETLNVRVTGQVTFNGVYPLLDAALDGFGLSYIPH 246 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +V D L+ ++ED +P+F + Y Sbjct: 247 DLVAAHIDAGRLIHVLED-WSPTFAGFHLY 275 >gi|260596139|ref|YP_003208710.1| transcriptional regulator [Cronobacter turicensis z3032] gi|260215316|emb|CBA27276.1| HTH-type transcriptional activator aaeR [Cronobacter turicensis z3032] Length = 315 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 4/248 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 7 RMSVFAKVVELGSFTSAARQLEMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + H+++ +L + P G LRI + + QN+L L YP + + L Sbjct: 67 YQGCRRMLHEVQEVHEQLYAFNNSPIGTLRIGCSSTMAQNVLASLTAGMLRDYPGLSVNL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L ++ M AA YL P +L Sbjct: 127 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCAAKSYLAQAGTPEKPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + E R + + R N +++ ++ G+GIA +P Sbjct: 186 ANHSWLEYSVRPDNEFELIAPEGISTRLLPQGRFV---TNDPMTLSRWLKAGAGIAYVPL 242 Query: 247 YIVKDNPN 254 V D N Sbjct: 243 MWVIDEIN 250 >gi|238762579|ref|ZP_04623549.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638] gi|238699224|gb|EEP91971.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638] Length = 323 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 80/320 (25%), Positives = 145/320 (45%), Gaps = 34/320 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF V SFT A+ L+L +SS++ + LE + I+L R R ++ T G Sbjct: 5 DAMRVFIRVVEQRSFTQTAQDLNLPRSSVTDAVKQLEKRLNIRLLQRTTRHVSPTLDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ +E E+ ++ KP G LRI L ++ + L +F+ YPDI++ Sbjct: 65 YYQRCLKIIADIEDA--EMAFANAKPRGLLRIDVQGTLARHFVLPQLPDFIAQYPDIELF 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D +R+ +Q S ++ R++ + AAP YL+ PL++ E Sbjct: 123 ISEGDRLVDLIREGFDGVLRVGN-LQDSDMVARRVALLPQVTCAAPRYLQQHGAPLTLNE 181 Query: 186 LDKHNLITF-----GDLIP-------KCMEDFNWLATVDR--PIGEPRI----------- 220 L H +I F G L+P +C + R P I Sbjct: 182 LAGHQMIGFRSSATGGLMPLEFCIGTQCQPSAQKEHSYQRSPPYSSAEIQDVEVQNVKLP 241 Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEAL 277 + L V+ S + L GI +P Y ++ + L+ I+ + P V F YP Sbjct: 242 AILSVSGAESFVAAARLALGIIQVPRYHIESDLRAGTLIEILPEYAPPPMPVSFLYPRNR 301 Query: 278 KNTGKLKAFRNF---IFLKA 294 + + +++ F ++ +FL A Sbjct: 302 QLSPRVRIFSDWLSQVFLTA 321 >gi|161505852|ref|YP_001572964.1| hypothetical protein SARI_04029 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867199|gb|ABX23822.1| hypothetical protein SARI_04029 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 300 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE++ L + S+SRQI LE ++G +L +R R + LT+ G + Sbjct: 8 MKLFIHVAERESFSRAAEEVGLPKGSVSRQIQALENQLGTRLLHRTTRRVQLTQDGMAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLTNSLIMPRLSTFLHHYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P S+ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLTRVNCASPQYLARFGYPESLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 LHAMVHY-SLTPGISSPGFSFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRITVREALRAGTLIEILPQYRASPLPVTLHYP 275 >gi|134282217|ref|ZP_01768922.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|134246255|gb|EBA46344.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LVDSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W RP + N + + G+GIAL Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296 Query: 298 KF 299 ++ Sbjct: 297 RW 298 >gi|70732524|ref|YP_262287.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346823|gb|AAY94429.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 302 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 12/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64 ++ RVF VA GSF AA L L ++++S + LET +G +L +R R + LT G+ Sbjct: 5 EQYRVFIQVADMGSFIKAAHALELPRATVSSAVQQLETGLGTRLLHRTTRHVQLTADGAI 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L R + E Q+ + SG+L I + + L+ L +L YP +Q+ Sbjct: 65 LLERARRLLADAAELNQL-FHHRQIDVSGRLNIDVPSRIARRLIVPALPRWLAQYPGLQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L +++ID+ + DCAIR+ + SSL+ R L + + A+P YL EP + Q Sbjct: 124 ALGASDRNIDLVQEGIDCAIRV-GSLADSSLVARPLGQLALINCASPAYLAEQGEPHTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L + G P + W L + +G P S + VN+ + + C G G+ Sbjct: 183 DLQNGQWMV-GYASPDTGREQPWEYLLEGREHLLGLP--SRVIVNNVENYIACCRQGLGL 239 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P + V+ D LV+++ ++ + YP+ + +L F Sbjct: 240 IQVPRFDVQHLLDRGELVQVLRELPVAPMDICALYPDRRHRSRRLNVF 287 >gi|78049452|ref|YP_365627.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037882|emb|CAJ25627.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 307 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 2/179 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G F AAE L + +++S+ IS LE +G+KL R R + ++ G+ + Sbjct: 7 IRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVKLLERSTRRVRVSNDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + L + P G+LR+ T LL L EF YPDIQ+QL Sbjct: 67 ARVRHLLTELDDVEATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPDIQLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ + DCAI R +LI RK+ ++ A+P YL P ++L Sbjct: 127 VTDRTVDVIGENIDCAI--RSTADDGALISRKIGSLAWTTCASPDYLVRYGVPTHPEQL 183 >gi|192290314|ref|YP_001990919.1| LysR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284063|gb|ACF00444.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris TIE-1] Length = 305 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 14/300 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA F AA +L LS S+++R ++ LE +G +L R R + LT+ G + Sbjct: 5 DTMTAFVAVADLQGFAPAARKLGLSPSAVTRMVAALEERLGTRLLQRTTRSVALTDTGVR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +E + PSG+L ++ + G+ + L ++L YP++ + Sbjct: 65 YLERVRRILADVEEADTSAAAERIIPSGRLVVSAPVGFGRRHVAPLLSDYLRRYPEVTGE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + I++ D DCA+R+ + SSL+ R+L + A+P YL P + E Sbjct: 125 LRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPAYLAARGIPATPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 + H++I FG + W VD + RI+C L N + G G+ Sbjct: 184 IAAHDVIHFG----QTGAPVGWHFVVDGR--DVRIACTPRLVSNVADVAILDAERGGGLT 237 Query: 243 LLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + Y D R+ + T P + YP + + K++AF + + + DW+F Sbjct: 238 RVLAYQAADAIAAGRLQIVLATYEVPPLPIAIVYPTSRLLSAKVRAFID-LAAETSDWRF 296 >gi|114762412|ref|ZP_01441870.1| transcriptional regulator, LysR family protein [Pelagibaca bermudensis HTCC2601] gi|114545030|gb|EAU48034.1| transcriptional regulator, LysR family protein [Roseovarius sp. HTCC2601] Length = 303 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 122/255 (47%), Gaps = 8/255 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ +D +R F V GS + A L +S + S +IS LE +G++LF R R L+ T Sbjct: 1 MSY-FDNIRTFVRVYELGSMSAAGRDLRISSAVTSSRISQLEEHLGVRLFQRTTRSLSPT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +R +E+ +E+ + ++ + G L +A + +G+ L+ + FL YP Sbjct: 60 EHGQSFYRGATEILDAVESAEAQIVNVTEHLKGALYVAAPLGVGRRLIAPQVPLFLAEYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ ++L L ++ +D++ + D A L +P + S+L RK+ + A+P Y+ P Sbjct: 120 DVSVRLRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVPRVLCASPEYVARRGMP 178 Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L D+H I P E F W L T D P + + + + + Sbjct: 179 DDGDALLADRHECINL--RFPGAAE-FQWRLLTPDGPRRFAVTGRYESDDGDVLTDWALG 235 Query: 238 GSGIALLPDYIVKDN 252 G GI L P + V ++ Sbjct: 236 GHGIVLKPVFEVAEH 250 >gi|331665142|ref|ZP_08366043.1| putative transcriptional regulator LYSR-type [Escherichia coli TA143] gi|331057652|gb|EGI29638.1| putative transcriptional regulator LYSR-type [Escherichia coli TA143] Length = 323 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 IQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + + A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|293394647|ref|ZP_06638939.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422773|gb|EFE96010.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 303 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 8/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS AAE L +S++ ++R ++ +E G +L +R R L+LT+ G + + Sbjct: 9 VFVSIVERGSMIAAAEALGMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLQR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + + +ESS + G LRI + LGQ L G + ++L +P + + L ++ Sbjct: 69 CRQMLQVAQDIDLAQEESSDELRGLLRITCSQSLGQTALVGAVSQYLKRHPQVAVDLQMN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +++ + D A+R+ + +LI R L T AAP YL P Q+L H Sbjct: 129 NRAVNLVEERIDLALRITNEL-DPNLIARPLSTCASVVCAAPAYLVAHGTPRQPQDLALH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N +T+ K + F +S N + +M + G+GI+L P Y Sbjct: 188 NCLTY-SYFGKSLWHFEHQGVKSAVAVSGNLSA---NESVVLMAGTLQGAGISLQPYYSA 243 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV +M D S +Y Y + L+ +F+ Sbjct: 244 APLLAKGELVELMPDYQPQSMGIYGIYTSRRQMPATLRTMLDFL 287 >gi|270262507|ref|ZP_06190778.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043191|gb|EFA16284.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 297 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 125/274 (45%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA +L +SQS++S I GLE + ++L R R + TE G Sbjct: 5 NFNDLISFLVVARERSFTKAAAKLGVSQSALSHAIRGLEERLELRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++E+ L E +P+G +RI ++L LK FL YPDI Sbjct: 65 ERLLNSIGPRFAEIESELDALSEMRERPAGNIRITAGEHAVDSVLWPMLKSFLADYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI D IRL + + + R + M A+P Y + P + Sbjct: 125 VEITVDNTLTDIVAGRFDAGIRLGEQVAKDMIAVRIAPDMRMVPVASPAYFERYGIPNTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 Q L H I +P + W A R I L NS + +LG GIA Sbjct: 185 QALQNHRCINM--RLPTMGGIYAWEFAKDGREIKVRVEGQLIFNSLRQRIDAALLGFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P+ V D L R++ D P F Y+ Y Sbjct: 243 FVPEDTVTDELAGGRLARVL-DEWCPLFPGYYLY 275 >gi|254485499|ref|ZP_05098704.1| transcriptional regulatory protein [Roseobacter sp. GAI101] gi|214042368|gb|EEB83006.1| transcriptional regulatory protein [Roseobacter sp. GAI101] Length = 294 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 27/297 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW L F VAR+GS AAEQL+ + +++ RQ+ GLE ++G++LF R A GL L+ G Sbjct: 3 DWKSLPAFLAVARAGSLRGAAEQLNGTHATVRRQVEGLEAQLGVQLFRRSAGGLDLSAAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 KL E L ++ + +G++R++ LL L EFL LYPDI Sbjct: 63 RKLLPQALEAETALRQGFNAVRGLDSEAAGRIRLSADPMTAHFLLAPVLGEFLTLYPDIH 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + L I D +IR + I + + RKL + + +A+ Y Sbjct: 123 IDMNLSYAIDSIEKLETDVSIRHVREIDGDA-VGRKLFPLSLGVFASRDY---------- 171 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--------PRISCLQVNSYLSI-MQY 234 LD+H D P+ E WL + P + PR + + ++ M Sbjct: 172 --LDRH----LHDAGPRG-EGLTWLGYGEVPELQAMIAASPFPRAAVRHAIADPAMHMHL 224 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+ L ++ P L R+ + S + + L+ +++ F +F++ Sbjct: 225 ARAGVGMTFLATWVQSVFPELERVRGTELDQSRSTWVLMHGDLRRVQRVRLFVDFLY 281 >gi|167565462|ref|ZP_02358378.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 336 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I++ Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRGQHPDVSIEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTHEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|16119467|ref|NP_396173.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15162007|gb|AAK90614.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 313 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 13/276 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D F VA SF AA++L+++ S+IS I LE + ++LF R R ++LTE G Sbjct: 12 DLAAFSAFLAVATHRSFRSAADELNMTPSAISHSIKVLEERLNVRLFNRTTRSVSLTEAG 71 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L +E EL+ + PSG +RI + + +L+ L FL YP + Sbjct: 72 ERLASKLKPAMASIEEAVQELEGNGPVPSGTVRINASEGAIRLVLRPVLAPFLREYPQVH 131 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++ D + DI D D IRL + + + + + A A+P Y + PL Sbjct: 132 LDIVSDGRLSDIVADGFDAGIRLAEAVPKDMVAIPVMGEVRFAAVASPEYFERRGYPLIP 191 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 Q+L H+ I F + + W +R RI+ L ++ +++ + G G Sbjct: 192 QDLHSHDCIRFRF---ESGAIYRW--EFERMGASERINVSGPLTLSDQPLMVEAAIDGIG 246 Query: 241 IALLPDYIVK---DNPNLVRIMED--VITPSFTVYF 271 IA +PD++ ++ L R++ED P +Y+ Sbjct: 247 IAFVPDHLATEALEHGRLERVLEDWCPALPGLCLYY 282 >gi|73537956|ref|YP_298323.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72121293|gb|AAZ63479.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 303 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 16/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR + LE +G +LF R R + LT++G Sbjct: 13 IELFCLAAELGSFTAAAVAASVTPAAVSRTVQRLEERLGARLFVRTTRQIRLTDEGRVYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ P+G+LRI+ + L EF LYP+++I + Sbjct: 73 EQSRAALAQLVDAERQISGQQAAPAGRLRISLPTPYAHYRVLPVLPEFRSLYPEVEIDVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D + D D ++R R P S+LI RKL + A P YL+ +P S +L Sbjct: 133 ISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVATPEYLRRAGKPESPDDLP 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVL---GSGI 241 +H I F P W V+ + + SY + I+ L G+G+ Sbjct: 192 RHECIQFER--PSSGRRIPWTFQVN----DEDTDIMTAGSYAASEDILGGATLVRAGAGL 245 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++V+ + LV ++++ + YP A T +++AF +F+ K Sbjct: 246 FQTYRFVVEQDLRDGTLVEVLQEFGGSTRPFVLLYPSARYVTRRVRAFVDFLVDK 300 >gi|260769246|ref|ZP_05878179.1| transcriptional regulators LysR family [Vibrio furnissii CIP 102972] gi|260614584|gb|EEX39770.1| transcriptional regulators LysR family [Vibrio furnissii CIP 102972] Length = 310 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 6/180 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V R GSFT AA + S++S+QI LE +G++L R R ++LT G ++ Sbjct: 6 QLSLFVDVVRQGSFTKAALLHDMDNSALSKQIKKLEQSLGVQLLNRSTRTISLTPVGEQI 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + L Q + + PSG ++IA GQ LQ L F+ YPD+++ L Sbjct: 66 YQQAQVLEDTLNNIQRIAETHQLTPSGSIKIAAPNYFGQRYLQPVLDAFIGKYPDVELTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-----VTIHMHAYAAPHYLKNCREPL 181 ILD+K DI D D AIR+ K + S+LI +K+ V I + + A H L E L Sbjct: 126 ILDDKRADIIADKFDVAIRIGK-LADSNLIAKKITNTNFVLIASNDFVAKHGLPQSPEAL 184 >gi|184157726|ref|YP_001846065.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332876409|ref|ZP_08444178.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|183209320|gb|ACC56718.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|193077041|gb|ABO11799.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC 17978] gi|322508033|gb|ADX03487.1| Transcriptional regulator LysR family [Acinetobacter baumannii 1656-2] gi|323517619|gb|ADX92000.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735419|gb|EGJ66477.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 313 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + E+ ++ KP G+LR+ + G + + + EF YP++ ++ Sbjct: 73 ERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YL+ P S ++L Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P D++ L L ++ ++ G+ALLP + Sbjct: 193 NHACLRLVN--PSITPDWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALLPMF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 D N L I+ + +P VY P R+FI K R W Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|170767064|ref|ZP_02901517.1| transcriptional regulator, LysR family [Escherichia albertii TW07627] gi|170124502|gb|EDS93433.1| transcriptional regulator, LysR family [Escherichia albertii TW07627] Length = 299 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALENQLGTQLLQRTTRRVRLTPDGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ L Q SGKLR+ + +NL +L +FL YP I+++L Sbjct: 67 QRAKDILSNLNELDGLFQHDVTSISGKLRVDIPPGIAKNLFLPHLPDFLYQYPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +DI D DC +R+ + +I R L + M A+PHYL P ++ L Sbjct: 127 SSDHPVDILRDGFDCVVRIGT-LPDDGMITRPLGKLTMVNCASPHYLTRFGYPENLDNLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H L+ + + + + D + + L VNS + + + G GI +P Sbjct: 186 SHALVHYTPNL--AVHPLGFEVASDNGVQWVKSGGMLTVNSSETYLAAGLAGLGIIQIPR 243 Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 IV++ R++E + P + + YP+ + + ++ F ++ Sbjct: 244 VIVREALRAGRLIE--VLPGYRAEPLLISLVYPQRRELSRRVNLFMQWL 290 >gi|107024158|ref|YP_622485.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116688515|ref|YP_834138.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105894347|gb|ABF77512.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116646604|gb|ABK07245.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 306 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 11/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V SF+ AA +L ++ SS++R+I LET++GI+L +R L TE G L+ Sbjct: 9 LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L Q +L +P G LR+ G+ L L F+ YP +Q+ L+ Sbjct: 69 GRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDLV 128 Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L + +D+ D A+R+ P++ + + L A+ YL C EP S Sbjct: 129 LTDSMVDLQGARLGSDVDLAVRI-GPLEDTRFVATVLAPQRRVLCASAAYLARCGEPASP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H+ + + P F V +PR + N ++++ + G G+A Sbjct: 188 DALGGHDCLAWHGAPPPGAWRFGERRHVP---AQPR---FRSNHSEALLEAAIDGLGLAH 241 Query: 244 LPDYIVKD 251 LP ++V D Sbjct: 242 LPTWLVAD 249 >gi|270262942|ref|ZP_06191213.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043626|gb|EFA16719.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 319 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 11/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F VA GSF+ AA +L + SS+ R I LE+ + LF R RGL LT+ G Sbjct: 27 EHLPIFLEVALLGSFSAAARKLGMVPSSLVRHIDALESALDATLFIRSTRGLMLTDAGEM 86 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + EL S P G LRI+ G+ + L YP + + Sbjct: 87 LKARAAALLSDITDIRAELASLSDVPQGTLRISCLPTFGKTYILPLLPTLAERYPQLFVD 146 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D + + D AIR+ + + S L ++ T A+P Y+ P + Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPGYIARYGCPGDLNA 205 Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H LI + P C W + + L+ N + + Q +LG GI L Sbjct: 206 LPEHRLIARYNKQQPAC-----WTQILSGQLLNRCSMVLRCNDFTAQRQAALLGLGITFL 260 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++V + L +++ED +Y P A K + +L AF + Sbjct: 261 PNWVVGPDIQAGRLHQVLEDPRQEQQGIYLLRPVA-KISARLSAFSALL 308 >gi|254795474|ref|YP_003080311.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|254594874|gb|ACT74235.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] Length = 299 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL +L EFL +P I+++L Sbjct: 67 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPHLSEFLYQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P + +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQNPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|238791596|ref|ZP_04635234.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC 29909] gi|238729212|gb|EEQ20728.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC 29909] Length = 300 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 12/266 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A +GSF+ A L L Q ++SR ++ LE + +L +R R L+LT +G + + Sbjct: 10 FVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRTTRKLSLTPEGERYYLEA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +E ++ +E +V P+G LR+A L L ++ +FL YP++ + L +++ Sbjct: 70 RRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLERYPELTLDLQIND 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + I++ + A+ AIR+ ++ S++ R+L A+ YL P + ++L KH+ Sbjct: 129 RYINLVDEGAELAIRIGH-LEDSAMRARRLGMFERVCVASNKYLAKHGTPNTPEDLKKHD 187 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 + + L F + I P L+VNS ++ ++ G GIA P+++ + Sbjct: 188 CLIYTLLTTGATWRF-------QDINVPVSGRLRVNSPEAVQKFVNAGIGIAQGPEWLFE 240 Query: 251 ---DNPNLVRIMEDVITPSFTVYFCY 273 +N NL ++ D + Y Sbjct: 241 EGLENGNLQLLLTDYTASPVPIQAVY 266 >gi|222110725|ref|YP_002552989.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730169|gb|ACM32989.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 288 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 14/293 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + LR F AR + T AAE+LH++Q+++S+ I LE VG LF R RGL LT Sbjct: 1 MHLPLNALRAFEAAARHLNLTRAAEELHVTQTAVSQHIRNLEERVGKPLFRRLPRGLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G +L V S+ + ++ L ++ +P L + L L+ F +P Sbjct: 61 DEGRQLVPVLSDSFARIGQALQRLADT--RPREVLTVGVVGTFAVGWLLPRLRAFHESHP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L+ N +D++ + DCAIR + +R L+ + AP REP Sbjct: 119 FVDLRLLTHNNRVDLAGEGLDCAIRFGDGAWHGTDAER-LMPAPLAPLCAPEVAARLREP 177 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L L+ + E W A P P + +S L++ + G+G Sbjct: 178 ---ADLGAEALLRSY----RTDEWPAWFAAAHAPC--PVLRGAVFDSSLTLAEAAAQGAG 228 Query: 241 IALLPDYIVKDNPNLVRIMED-VITPSFTVYF-CYPEALKNTGKLKAFRNFIF 291 +ALLP + + R+++ T + Y+ C ++ T L+AFR+++ Sbjct: 229 VALLPVRMFERELRQGRLVQPFACTAALGDYWLCRLKSRAPTDALQAFRDWLL 281 >gi|217974510|ref|YP_002359261.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217499645|gb|ACK47838.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 299 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 136/287 (47%), Gaps = 29/287 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +++ D +R+F+VVA+ GSF AA+ L + S++SR+I+ LE +G++L +R A + LT Sbjct: 3 LNYSLDDMRLFWVVAQQGSFKLAAQHLCIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + ++ +L EL + GKLRI+ I+ L +L F YP Sbjct: 63 ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-----HYLK 175 +I I L L N +ID+S + D A R+ +P + I R L TI A H L+ Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCACSSATQWHALQ 181 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISC-LQVNSYL 229 SI+ L++H +I I K ++ + + G EPR + L V+ Sbjct: 182 ------SIEALEQHPVI-----IAKPVKTWRLQHNI---TGQNFEFEPRGNIKLAVDDMA 227 Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 Q V G GI LLP + + + LV+I+ + T Y Y Sbjct: 228 IASQAVVAGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMY 274 >gi|121593069|ref|YP_984965.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120605149|gb|ABM40889.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 300 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 145/296 (48%), Gaps = 18/296 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + LR F VA + SFT AAE+LH+++ +S QI LE +G LF+R R +TLT+ G Sbjct: 7 DLNLLRAFLAVADARSFTAAAERLHIARPQVSLQIRRLENVLGAALFHRTTRTVTLTDAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +L ++ + LE LQ + + S G+LR++ ++ ++ + EF + +P Sbjct: 67 QRLFEESAPLMQGLEQV---LQHAGSRGSGLRGRLRVSAPVEYAVQVMSPVVAEFAVRHP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L++ +K D+ + D +IR+ +++SS KL A+P Y C P Sbjct: 124 EVSLELVVSDKVQDLVGEGIDVSIRVGW-LRNSSARVAKLGEFGQAVLASPEYRARCPRP 182 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 + ++L H I L+P + W T R++ L+ +S +++ + G+ Sbjct: 183 EAPEDLAHHRWIAL-TLLPAPL---TWSFTNGTKDITVRMAPKLRTDSAVALRALLLNGA 238 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 G+++ ++ + LVR++ + VY YP T A R F+ L Sbjct: 239 GVSVGSLLHLESDIRSGTLVRLLPEWTLRKGGVYAVYP---PGTAIAPAARAFVEL 291 >gi|308050743|ref|YP_003914309.1| LysR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632933|gb|ADN77235.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM 9799] Length = 293 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 121/259 (46%), Gaps = 9/259 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D L+ F V +GSF+ AAE L L + ISR ++ LE ++G L R R L LT Sbjct: 1 MKTRSDDLQCFLAVVDAGSFSAAAEALDLQVARISRAVTRLEQQLGTTLLNRTTRRLELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G+ +L+ + + + + +P G+LR+ Q+ L +L F YP Sbjct: 61 EEGATFADAVRAGLAQLDAAEEAVAQVAGRPVGRLRVDAASPFIQHQLLPHLAAFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+++L ID+ D AIR+ + S+L R L +H AAP YL P Sbjct: 121 EIRLELSASEGIIDLLEKRIDVAIRI-GTLSDSTLHARPLGRSALHLVAAPDYLARQGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ LD H+L+ F IP + W PI R + N L + + + G G Sbjct: 180 DSVDALDGHSLLGF---IPPSRLN-QWPLPGTAPI---RPAVAVSNGEL-LRRMALDGHG 231 Query: 241 IALLPDYIVKDNPNLVRIM 259 IA L ++V + R+M Sbjct: 232 IACLSHFMVAQDLEAGRLM 250 >gi|218892081|ref|YP_002440948.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254240345|ref|ZP_04933667.1| hypothetical protein PA2G_00992 [Pseudomonas aeruginosa 2192] gi|126193723|gb|EAZ57786.1| hypothetical protein PA2G_00992 [Pseudomonas aeruginosa 2192] gi|218772307|emb|CAW28089.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 311 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L F V G F A + + +S +SR+I+ LE + ++L +R R L LT Sbjct: 1 MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + E + + E SV+P G+LR++ + + + L L FL +P Sbjct: 61 EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +Q++++L N+ +D+ + D A+R+R+ + +L+ R+L AAP + R Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRR- 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232 L E D +L G + D AT+ P G EPR L V+ ++ Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230 Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V G G+ LLP+ Y ++ + +LVRI+ P T+ Y L + ++ A R Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287 Query: 290 I 290 I Sbjct: 288 I 288 >gi|271502613|ref|YP_003335639.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270346168|gb|ACZ78933.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 296 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 137/292 (46%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V GSF+ AA +L + Q +IS+ I LE ++ +KL R RGLT TE G + + Sbjct: 7 LETFVCVYECGSFSAAASRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQQFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + +L+ Q ++ + + SG LR++ + + + +L FL +P+++ +I Sbjct: 67 RQVAPALRQLQEAQDAVRGGNGELSGYLRVSAPVTFARLHVLPHLHTFLSQHPNLKADII 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ + D A+R+ ++ S L RK+ + M A P Y P S L+ Sbjct: 127 LDDRPVDLIAEGIDVALRVGD-LKDSGLTARKIGSAPMRLLATPAYFAAHGTPTSPDALE 185 Query: 188 KHNLITF-GDLIPK--CMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241 H+ + + D P C + DR + R++ ++ + + + + G+G+ Sbjct: 186 HHDAVIYLQDEAPGSVCFQKG------DR---QHRVTLSGRIRTTAAEGVREAVLAGNGL 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ N +V + D V+ YP + + +AF F+ Sbjct: 237 TVASAWMFAPELANGTVVTALTDWHIGVRDVWAVYPGGRLTSVRAQAFTGFV 288 >gi|222872209|gb|EEF09340.1| predicted protein [Populus trichocarpa] Length = 329 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 18/277 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA GS + AA ++ + I R+I LE +G+KL R R +TLT +GS Sbjct: 17 LETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAFL 76 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L + + VK SG LRI G+ + + F+ +PD+ + L Sbjct: 77 EDCQRILNDLHNAEASVSAGGVKASGHLRITAPAGFGRKHVAPLVPLFIESHPDVTLTLD 136 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + DCAIRL + SSL+ +L A+P YL P +EL Sbjct: 137 LSDRVVDLVNEGFDCAIRL-GDLPDSSLVSIRLAENRRVVVASPEYLARAGTPTQPEELA 195 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGI 241 +HN + FG W+ D R + ++V + + ++C+ G G+ Sbjct: 196 RHNCLAFG---ASANVQRGWVFQQD-----GRATTVKVGGNMECTDGAVLHEWCLGGYGL 247 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 A + V + LV ++++ P ++ +P+ Sbjct: 248 AWRSWWEVGQEIASGRLVTVLDEFQAPPIGIHAVFPQ 284 >gi|218682193|ref|ZP_03529794.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CIAT 894] Length = 298 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 11/276 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F VA SFT AA +L ++QS++S + LE +G++L R R + TE G Sbjct: 5 NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L KP+G +RI + ++++ L L YPDI+ Sbjct: 65 ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +DN +I D D +RL + ++ + R + A+P Y + P + Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFNSRPVPTTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 QEL +HN I + + + W ++ E R+ L N+ ++ + G G Sbjct: 185 QELMQHNCIN--RRLDRIGGLYAW--EFEKNDEEVRVRVEGQLTFNTDREMVGAALQGYG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 IA +P+ V + L I+ED TP F Y+ Y Sbjct: 241 IAFVPESYVATHLAERRLTLILED-WTPKFAGYYLY 275 >gi|160897431|ref|YP_001563013.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363015|gb|ABX34628.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 302 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 12/279 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V SGS + A + L+Q ++ R I GLE+ +G++LF R + G TE Sbjct: 11 WEWYRSFLQVLESGSLSAAGRAMGLAQPTVGRHIDGLESALGLQLFTRSSDGFAPTEAAY 70 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + + + G +R+ + +G LL L + +P+++I Sbjct: 71 ELQPYAASMAATAAALRRVAASHGAGVRGTVRLTASEVVGVELLPPVLAQLRAAHPELRI 130 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L N D+ AD A+R+ +P Q +L+ R + I + +A YL P S+Q Sbjct: 131 ELVLSNAVDDLLRREADVAVRMFRP-QQEALVARHIGAIELGLHAHESYLARHGVPASLQ 189 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL H+LI F I + + F P+ L +S L+ + G GI Sbjct: 190 ELAGHSLIGFDHENAFIRRFQQQF--------PMFTREAMALSSDSDLAQLGAIRAGFGI 241 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 + + + LVR++ + + E L+ + Sbjct: 242 GICQSALAARDAGLVRVLPQAFSWKLDTWVAMHEDLRKS 280 >gi|330963653|gb|EGH63913.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 299 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 132/286 (46%), Gaps = 13/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF +A GSFT AE + + + ++R I LE + ++LF R R + LT +G + + Sbjct: 1 MQVFVKLAELGSFTKVAEAMQVGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 RV S + ETT + + S G+LRI Q L+ F +PDI + L Sbjct: 61 ERVKSNLADLAETTSMFDRNGSTL-RGRLRIDIPAAFSQRSFMETLRGFTRAFPDIDVVL 119 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ + DCA+R+ + + SSL+ R + M AAP YL+ P +++L Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPEMLEDL 178 Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++H ++F L W L D P P + VN + +Q + G GI Sbjct: 179 ERHCGVSF--LSGHNHRPLPWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGILQ 234 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P V+ + LV ++E V YP +++AF Sbjct: 235 APGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRSHLAPQVQAF 280 >gi|330820643|ref|YP_004349505.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327372638|gb|AEA63993.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 291 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 19/298 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW +RVF +AR GS AA +L +Q ++ R++ LE ++G +LF R +G T++ Sbjct: 4 IDWSDVRVFLAIAREGSLGAAARRLGQTQPTMGRRLKALEQQLGQRLFQRTQQGFIPTDE 63 Query: 63 GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G L R+ E L EL + ++ SG LR++ + G L + E+ Sbjct: 64 GQALLVHAERMEIEALAALR----ELSGAQMQLSGLLRVSCSDWFGSLRLAPVIAEYTAR 119 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + ++L+ D + + ADC +R+ P ++ R+L++ YAA Sbjct: 120 HPGVTVELLADPRLYSLPHREADCVMRI-APFVEPDVVSRRLLSTAYAVYAAAGASAE-- 176 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 + + + D M D W + R + E ++ + NS + + C LG Sbjct: 177 ----LSARGRGCRLVLMDTAFGAMPDVGW---IQRRLPEAAVAA-RSNSRETQARLCALG 228 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+A+LP + + P LVR+ PS + Y ++ +L F + + D Sbjct: 229 VGLAVLPIPLGEATPGLVRLDLGEAPPSRETWLGYHRDMRRQPRLSRFVELVVERLGD 286 >gi|298293420|ref|YP_003695359.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296929931|gb|ADH90740.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 306 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 16/265 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR+F VAR+G AA QL L +++ R++ LE +G KL R G LT Sbjct: 1 MDWDHLRIFLAVARAGQMLAAARQLGLDHATVGRRLGVLEASLGSKLIERRTTGSELTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L V ++ Q L + +G +RI G L L +P + Sbjct: 61 GERLLAHAERVETEMLQAQAALGNVDLALAGTVRIGAPDGFGTYFLAPRLGRLAEEHPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL + + D A+ L++P + L+ RKL + YA+ YL+ Sbjct: 121 TIQLAPLPRSFSLPKREVDIAVTLQRPSE-GRLVARKLTDYTLGVYASRGYLERTGAIDG 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYCVL 237 +L LIT+ +P D + +D R I R+ C V + M+ Sbjct: 180 TGDLAGRLLITY---VP----DLVYSPALDYFEAFREIEARRLECASV---VGQMEAVRA 229 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDV 262 G+G+ +L DY + + LV+++ ++ Sbjct: 230 GAGVGILHDYAARTHGELVQVLPEL 254 >gi|290509831|ref|ZP_06549202.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289779225|gb|EFD87222.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 134/288 (46%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R++ V + SF AAE L +S++SR + LE +G +L R R L++T +G + Sbjct: 5 DAMRLYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + S +P+G+ ++ L ++ + + EFL YPD+++ Sbjct: 65 YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + DI + DC IR + S++L+ R L A+P +L P SI + Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQSIDD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H + G L + +WL ++D R+ L V+ + +Q + G G+ + Sbjct: 185 LHQHRAV--GYLNHRTGRTIDWLFSLDDGDCAIRMQETLVVDDTDAYIQAGIQGLGLIRV 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+ + + LV +E V + + YP+ ++AF ++ Sbjct: 243 ASYLAQPYLQSGALVACLEQVAS-DLPLSLVYPQNRYLPPAVRAFYDW 289 >gi|260555408|ref|ZP_05827629.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC 19606] gi|260411950|gb|EEX05247.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC 19606] Length = 313 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + E+ ++ KP G+LR+ + G + + + EF YP++ ++ Sbjct: 73 ERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YL+ P S ++L Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P D++ L L ++ ++ G+ALLP + Sbjct: 193 NHACLRLVN--PSITPDWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALLPMF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 D N L I+ + +P VY P R+FI K R W Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|218707150|ref|YP_002414669.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|300897309|ref|ZP_07115743.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|218434247|emb|CAR15165.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|284923546|emb|CBG36641.1| LysR-family transcriptional regulator [Escherichia coli 042] gi|300358915|gb|EFJ74785.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] Length = 323 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + + A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 314 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] gi|133738827|emb|CAL61874.1| putative Bacterial regulatory protein, LysR family [Herminiimonas arsenicoxydans] Length = 293 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 10/268 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + D L+ F V SG+ AA+ L + S++SR +S LE ++ L R R + LT Sbjct: 1 MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + + ++ + ++ +PSG+LRI + + ++ EF LYP Sbjct: 61 DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L +++ D+ D AIR+ +Q S+L R L +H A+P YL+ P Sbjct: 121 QITLELTSNDQVADLLEHRTDIAIRIGN-LQDSTLHARALTANPLHLLASPDYLQRHGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ++L H L+ F E N W G L +S ++ + G Sbjct: 180 TTPEQLAGHQLLGF-----LQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALALHGQ 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVIT 264 GIA L DY+ +D+ LVRI+E+ T Sbjct: 235 GIASLADYMTRDDIAAGRLVRILENYYT 262 >gi|146311770|ref|YP_001176844.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145318646|gb|ABP60793.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 294 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 21/282 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F V R GSFT AA +L L+QS +SR + LE +G++L R R L+LT+ G Sbjct: 6 NYNELYLFMQVVREGSFTAAARRLGLAQSGVSRSVRDLEERLGVQLLVRTTRKLSLTQAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L++ + L+ L PSG +RI + L L YPDI+ Sbjct: 66 EQLYQTAESGFDALDRGFSTLAHYRQTPSGTVRINASQHAIDKCLLPKLAVIKQRYPDIR 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+ +++ +DI + D +RL + + + R + M A P + + P + Sbjct: 126 LELMNESRFVDIIAERFDAGVRLGPEVGNGMIAVRITPDMEMAVVATPDHFRRYGFPQTP 185 Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235 +L H I FGD + W D RP G+ S +SY+ Q Sbjct: 186 ADLVIHPCIAYQFGD-----GSLYQWELAHDGKKIMHRPQGQWVFS----DSYME-AQAA 235 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LG G+A +P ++ D+ L+R+M+ ++ YP Sbjct: 236 RLGLGLAYVPVELIADDLERGTLIRVMQRYSLRMDGLFLYYP 277 >gi|197106876|ref|YP_002132253.1| transcriptional regulator, LysR family [Phenylobacterium zucineum HLK1] gi|196480296|gb|ACG79824.1| transcriptional regulator, LysR family [Phenylobacterium zucineum HLK1] Length = 320 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 6/287 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +DW+ L+ F VAR GS AA L ++Q++++R+I LE + +KLF R G LTE Sbjct: 2 YDWNDLKAFLAVARGGSTLAAARGLGVNQTTVARRIESLEAALKLKLFERGQTGSRLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L V E +G +R+ L ++L + EF L+P++ Sbjct: 62 GHDLVAEAERVERAAERFGNRAAGHQRGMAGAIRVTAAEILANHMLMPGIAEFRRLHPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ LI+ ++ +D+ AD AIR + S L+ RK+ Y + Y P + Sbjct: 122 QVDLIVTDRPLDLEAGEADVAIRSAPALAVSDLVARKVGEYDFALYCSRDYAARRGVP-T 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++ L H+LI G+L M + +A + R G + + N+ +++ G G+ Sbjct: 181 LETLGSHDLIG-GELE---MAEGPGMAWMFRAAG-GKAPVTRSNTMSNLLHALKAGLGVG 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + L+R + + LK+T +++AF +F Sbjct: 236 PMVCQAADLERELLRCSPVIEEARGASWLITRRDLKDTPRVRAFIDF 282 >gi|15966629|ref|NP_386982.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307300336|ref|ZP_07580116.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307319619|ref|ZP_07599045.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|15075901|emb|CAC47455.1| Putative transcription regulator [Sinorhizobium meliloti 1021] gi|306894741|gb|EFN25501.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306904502|gb|EFN35086.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 297 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G L R R +LTE G Sbjct: 6 RIRAFIDVVDAEGFSAAARRIGKSKALLSKYVRELEDELGALLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121 +R SE+ +++ ++ ++ G+LRI D+GQ+L+ +F +P+ Sbjct: 66 YRSASEILKEIDNLADLVRANNSDLKGRLRITVPRTFVDADIGQSLI-----DFGKEHPE 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + ++ D++ ID+ + D AIR+ + ++ S+LI RKL + A+P ++ Sbjct: 121 LSLDIVSDDRFIDLVEEGFDVAIRITR-LEDSTLIARKLDDFQVLVCASPDFMAKAGPLG 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL K I D + + ++ P ++VNS L+ + V G G+ Sbjct: 180 HPSELSKLPCIL--DTNGRSYSSWRFVEKDGSPFTVSVSGQIEVNSPLAAARAAVSGIGV 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LPD+I + LV +D + +Y YP K++ F +F+ Sbjct: 238 AVLPDFIARPKIAAGELVTFFDDFLPKDRGIYAIYPHRRYLPTKVRTFVDFL 289 >gi|270262556|ref|ZP_06190827.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043240|gb|EFA16333.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 309 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 21/300 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F + A+S SFT AAEQL +++S++ + ++ LE +G +LF+R R L+LT G Sbjct: 16 FVITAKSNSFTEAAEQLGITKSAVGKSVARLEERLGTRLFHRSTRKLSLTSDGEAYLTSC 75 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 L++ + L P+G +RI G+NL+ L + +P +++ L ++ Sbjct: 76 LSALEILDSAENTLSRRQDNPAGTVRIDMPASFGRNLMMPVLLDITRRFPALRLALTFND 135 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + ID + D +RL + + LI R+L + A P YL+ P + L KH Sbjct: 136 RLIDPVEEGVDLVLRLGELQSTDELIARRLSRQRLLLCATPAYLEQHGIPTDTEMLKKHC 195 Query: 191 LITFGDLIPKCMEDFNWLATVD---RPIGEPRI-----SCLQVNSYLSIMQYCVLGSGIA 242 C+ + A + RP E I + Q++ +++ C+ G+GIA Sbjct: 196 ----------CIMGYRRGAPLAWRFRPADEREIRFISAAAHQISDGDAMLMACLAGAGIA 245 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 P+ +V D LV +M D + +P K++ + + KA + F Sbjct: 246 QFPESMVNSHLDAGTLVTLMADHTPEPVELNVVWPRTRHLIPKVRLIVDELLRKAAEGHF 305 >gi|50119682|ref|YP_048849.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49610208|emb|CAG73651.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 10/295 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + GSF+ AAE+L L ++++S I LE +G++L R R + +T++G + Sbjct: 7 MRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEGRLGVRLLQRTTRQVQITDEGRVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++E + ++P GK+R+ L + ++ L EF YP + + L Sbjct: 67 ERCLQLLAEIEEIDTLFTQQKLQPVGKVRVDMPHSLAREIVVPALGEFYARYPQVTLMLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ I++ + DC +R + +L R L ++ A+ YL P S+ EL Sbjct: 127 ANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQVTCASADYLARYGVPRSLDELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246 H+++ + L + + +++ +R I LQVN + + G GI P Sbjct: 186 GHHMVGYFSLRTEYLYPLEFMSGDER-ITRMLPGTLQVNGADAYIAGACAGLGIIQAPRR 244 Query: 247 --YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + D LV I+ ++ P+ +Y Y G+ A R +F++ D F Sbjct: 245 GLISLLDGGELVEILPEIPPPAMPLYVMY-----TPGRFLAPRIRVFIEWLDELF 294 >gi|296114396|ref|ZP_06833050.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] gi|295979157|gb|EFG85881.1| transcriptional regulator, LysR family protein [Gluconacetobacter hansenii ATCC 23769] Length = 297 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 123/268 (45%), Gaps = 19/268 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSF+ + + SQ +ISR I+ LE G LF R R L +TE G L Sbjct: 7 LHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMTEDGRSLL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV LET + L SG +R+ T G L G L + L +PD+ ++L+ Sbjct: 67 PHAYEVLEILETAETALGRRRASVSGLVRLGITTAFGL-YLTGKLGKLLEEHPDLSVELV 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ + D A+R+ I SLI R+L ++ + A+ YL P+ ++L Sbjct: 126 MRDGFGDLVEEGLDLAVRV-GSIAEGSLIARRLGSVRRYVVASSDYLARRGTPVHPRDLL 184 Query: 188 KHNLITFG------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H I + D C + N +A + NS +++Q G GI Sbjct: 185 NHPCIAYSYGGSRHDWHFDCKGEENVVAAS---------GPFRANSSEAVLQAVRSGLGI 235 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV 269 +LP + V+++ R++ + P +TV Sbjct: 236 GMLPSFQVEEDVASGRLIH--LFPEWTV 261 >gi|218709187|ref|YP_002416808.1| transcriptional Regulator [Vibrio splendidus LGP32] gi|218322206|emb|CAV18320.1| Transcriptional Regulator [Vibrio splendidus LGP32] Length = 294 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 17/273 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F VA F+ AA+QL S S +SRQ+S LE VG+ L R R ++LTE G Sbjct: 5 EGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTESGHT 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ ++ + SG LR++ +N + + F +PD+ I+ Sbjct: 65 YYQQCKDLVIGLQQANEQVTSQQAQLSGTLRVSAAGAFAENHVAAAMMAFAKDHPDLTIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ++ D D AIR + + S L+ RKLV M A A+ +Y+ P ++ Sbjct: 125 MNFNTNMVNFIEDGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQNYIDQFGSPTQPEQ 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L H+ I WL D +P+ R+ + N+ ++++ C G GI Sbjct: 184 LKWHSCII--------ANSDQWLFEKDGKPLNAVRVHGRWKSNNSSAVLKACEEGLGIVY 235 Query: 244 LPDYIVKD---NPNLVRIMED---VITPSFTVY 270 LP N LV ++E+ T S+ VY Sbjct: 236 LPKSSFNGGLANGKLVPVLEEYWGAGTSSWIVY 268 >gi|206576830|ref|YP_002238652.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|288935617|ref|YP_003439676.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|206565888|gb|ACI07664.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|288890326|gb|ADC58644.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 303 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V GSF+ AE++ +S + + I LE +G++L R R +LT+ G Sbjct: 5 ESMAVFVRVVDRGSFSAVAEEMRISGTMVGLHIKALEEHLGVRLLNRTTRRQSLTDFGQV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +E ++ + KP GKLR+ + G + L +FL+ + D+ + Sbjct: 65 YYQSCRRILADIEDSESQAFALHQKPRGKLRVGCPVSFGVHALSPVTAQFLIEWTDMAVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L +K +D++ + D I++ + + ++L+ R + A+P Y+K EP++ +E Sbjct: 125 LVLSDKSMDMADEGLDVMIKIGELLHVNTLVARPIAPYRSVMCASPAYIKRAGEPITPEE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + F I W L +P+ P + N+ ++ + + G GI + Sbjct: 185 LCHHRCLGFAHPIAAN----EWTLQREGKPVRAPVNITMTCNNGEALRRAALNGLGIIMQ 240 Query: 245 PDYIVKDN 252 P+ ++ ++ Sbjct: 241 PEILLAED 248 >gi|260776949|ref|ZP_05885843.1| putative transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260606615|gb|EEX32889.1| putative transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 297 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 17/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + V SG F+ AAE L++ + ISR +S +E ++G+ + R R + LT++G Sbjct: 10 DELEMLLAVVDSGGFSAAAEMLNIQVARISRAVSKVEKQLGVSILNRTTRRVELTQEGRT 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + H + + +L S +P GKLR+ + L ++ F YP+I+++ Sbjct: 70 FVDSVRKGLHIIHQAEEDLISGSERPRGKLRVDAASPFVFHQLVPLIQSFKDTYPEIELE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +D+ D AIR+ + ++ S+L R L + A+P YL++ P + E Sbjct: 130 ITSNEGFVDLLEQRTDVAIRIGQ-LKDSTLHARPLGKSELFIVASPQYLESSGAPRTTSE 188 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H LI F PK + W L VD EP I+ ++ ++ Q + +GIA L Sbjct: 189 LQSHQLIGFTS--PKVLN--QWPLKGVDAI--EPDITS---SNGETVRQLALASNGIACL 239 Query: 245 PDYIVKDN---PNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V+++ LV +++D T V Y ++ ++ AF +FI Sbjct: 240 SGFMVREDIKQGRLVSLLDDAKRLDTGREQVSAVYYKSSAVARRISAFIDFI 291 >gi|229589658|ref|YP_002871777.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361524|emb|CAY48400.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 297 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 7/258 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F + RSG AA++L + ++++R I +E +G LF +HA+G LT Sbjct: 2 FDWNDLRYFLELQRSGRLLTAAQRLKTTHATVARHIEAIEKSLGTALFVQHAQGYELTPA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + + EL S+ P GK+R+ LG L + YP + Sbjct: 62 GEALLKHAEAMENVALLAEDELTHSAA-PLGKIRLGVAEGLGVMFLASRMGGLFDRYPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + + I A+ +I L +P L+ RKL + YA+ YL Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-SVDQLVTRKLTDYRLALYASRAYLDRNPPIEK 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H I + D + E +L++ R P++ S ++ Q G GIA Sbjct: 180 REDLAAHAWIDYVDDLLFSQE-LKFLSSFCR---NPKV-VFHSTSVIAQHQAARSGLGIA 234 Query: 243 LLPDYIVKDNPNLVRIME 260 +LP ++ +P LV +++ Sbjct: 235 VLPCFMAAGDPELVPLLQ 252 >gi|170733835|ref|YP_001765782.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169817077|gb|ACA91660.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 320 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 137/291 (47%), Gaps = 22/291 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++A+ S + AA L LS + ++++ +E +G++L R R ++LT +G R Sbjct: 14 FILLAKLRSLSGAARALDLSPPAATKRLGVIEQRLGVRLVNRTTRSVSLTPEGEIYLRYA 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S++ ++ + EL P G LRI T+ G+ + + EF YP +++Q + + Sbjct: 74 SQIVGQVREMEEELSGGKGDPQGLLRINATLGFGRTTIAPLVSEFAKRYPSVEVQFEVTD 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ D AIR + + S L R++++ A+P YL+ P +++L H Sbjct: 134 RPVDLVEGAFDMAIRFGE-LPDSRLSARRIMSNRRFLCASPKYLEKYGSPERVEDLAAHR 192 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIAL- 243 I I + +D V R I I ++V LS ++++ + G G+ + Sbjct: 193 CI-----IHRQNDD---AYGVWRYIVNDHIETIKVKGALSSNDGDIVLRWALEGHGVLIR 244 Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L Y+ NLV + + + PS +Y YP T + +AF +F+ Sbjct: 245 SEWDLAKYLQSGRLNLV--LPNTVLPSADLYVYYPRQKNQTARARAFIDFL 293 >gi|170735495|ref|YP_001774609.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821533|gb|ACA96114.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 134/304 (44%), Gaps = 22/304 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L L+ SS+ R + LE +G L R R +TL++ G+ Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V +L + + PSG LR++ + G L ++ F+ +P + + Sbjct: 64 VYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPKLDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ D AIRL ++ ++ R L T + A+ YL P + Sbjct: 124 DLQLTDERVDLVSARIDVAIRLGDAAPTADVVARPLGTFRRYVVASRAYLDAHGTPATPG 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------G 238 EL H + F + + F +G R + + V L VL G Sbjct: 184 ELVDHACLRFHFGVDQQTWTF---------VGAQRTTQVVVTGRLKSNHSEVLREAALDG 234 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291 +GIALLPD++V + L R+ + +TP + Y + + ++ AF +F+ Sbjct: 235 AGIALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVE 294 Query: 292 LKAR 295 AR Sbjct: 295 SLAR 298 >gi|118592819|ref|ZP_01550208.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118434589|gb|EAV41241.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 305 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 16/307 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D D +R F V GS + AA +L++S+S +SR+I+ +E +G +L R RG+ TE Sbjct: 2 IDLDDMRCFVEVVDCGSLSAAATRLNISKSVVSRKIARIEDLLGTRLLDRTTRGIAPTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + E T + E S + G+LR++ + G L L YP + Sbjct: 62 GLEFKSRSERILLEYEETLEAISEHSNEIVGELRLSVPLAFGTRHLGPVLASLACRYPRL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ ++ +D+ + D IR+ ++ SS I RK+ I A+P YL+ P S Sbjct: 122 KVDASFSDRVVDLIGERFDAVIRIGH-LRDSSYIARKIAPISSIVVASPTYLERNGTPQS 180 Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L H+ LI L P + RP G L+ ++ + + + V G GI Sbjct: 181 PEDLTAHDCLIYTAALSPDWVFQSGNRKISVRPSGR-----LRTDNGDTTVAWAVAGLGI 235 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF------L 292 A P ++V + +LV ++ D TP +Y K++ + + L Sbjct: 236 AHAPLFLVNEAVERGDLVPLLLDYPTPEVGLYVLRAPGANTPRKVRVLIDALVENVSGKL 295 Query: 293 KARDWKF 299 DW + Sbjct: 296 NWADWTY 302 >gi|160873375|ref|YP_001552691.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|160858897|gb|ABX47431.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|315265603|gb|ADT92456.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 307 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 132/288 (45%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SFT A+ L LS++ +S ++ ET +G +L R R + LT+ G + Sbjct: 8 MQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + Q + + SG+LR+ + + +NL+ L EF+ YP I+++L Sbjct: 68 ERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVIPKLAEFIEQYPHIELELS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC IR+ +Q LI +KL M +P Y+ P SI +L Sbjct: 128 STDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKLGHFKMQNCVSPAYIAQYGRPESIADLT 186 Query: 188 KHN--LITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGI 241 HN L+ + + F + A I P++ + VN+ + C+ G GI Sbjct: 187 LHNHKLVHYVSQLGGTDSGFEYQAPHTHQGSLTIQLPKL--ITVNNADAYSSACLAGLGI 244 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P V LV I+ + P V YP + +L+ F Sbjct: 245 IQVPSIGVAKYLHTGELVEILPNYPAPPMPVSLLYPHRRHLSKRLQVF 292 >gi|71280634|ref|YP_269388.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71146374|gb|AAZ26847.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 294 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 127/277 (45%), Gaps = 18/277 (6%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR +F +A GSFT AEQ++ S+S IS++IS LE ++G +L +R R + LT Sbjct: 2 DKLRAIQLFVRLADLGSFTRVAEQVNSSKSMISKEISRLEADLGTRLLHRSTRSVQLTHV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + E+ KL+ +Q+ GKL+I + LG L +F+ P+I Sbjct: 62 GEGYLQRAREILSKLDDADNFVQDLQQNLRGKLKINAPMALGITDLSHLFADFMKANPEI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +D+ D R S+ + R L +P YLK Sbjct: 122 ELDIHLGDESVDLVEQGFDLGFRASSQPIDSNYVGRPLTRFTYKVCVSPDYLKMHSTITH 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240 ++L +HN + K + W PI G L+VN+ + +M+ G G Sbjct: 182 PRDLKEHNCFIYSYFQGKNV----W------PIEGGIEVKGSLRVNNTMFMMESIKQGLG 231 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274 I +PD++ + N +V ++ D T+Y YP Sbjct: 232 IGFIPDFVCQQAINSGQVVEVLADSKKSMLTLYALYP 268 >gi|126443487|ref|YP_001063973.1| transcriptional regulator [Burkholderia pseudomallei 668] gi|126222978|gb|ABN86483.1| transcriptional regulator [Burkholderia pseudomallei 668] Length = 313 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 + ID +S D D AIR P +L L + A AAP YL Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 177 >gi|315181784|gb|ADT88697.1| transcriptional regulators, LysR family [Vibrio furnissii NCTC 11218] Length = 310 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 6/180 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V R GSFT AA + S++S+QI LE +G++L R R ++LT G ++ Sbjct: 6 QLSLFVDVVRQGSFTKAALLHDMDNSALSKQIKKLEQSLGVQLLNRSTRTISLTPVGEQI 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + L Q + + PSG ++IA GQ LQ L F+ YPD+++ L Sbjct: 66 YQQAQVLEDTLNNIQRIAETHQLTPSGSIKIAAPNYFGQRYLQPVLDAFIGKYPDVELTL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-----VTIHMHAYAAPHYLKNCREPL 181 ILD+K DI D D AIR+ K + S+LI +K+ V I + + A H L E L Sbjct: 126 ILDDKRADIIADKFDVAIRIGK-LADSNLIAKKITNTNFVLIASNDFVAKHGLPQSPEAL 184 >gi|28558879|ref|NP_788139.1| putative transcriptional regulator [Ruegeria sp. PR1b] gi|22726430|gb|AAN05225.1| RC152 [Ruegeria sp. PR1b] Length = 306 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 15/298 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SF AA L ++ +SI+R ++ LE ++G +L R R ++LT G+ + Sbjct: 7 IRVFLEVVAQDSFIGAARSLRMTPASITRIVAQLEEDLGQQLLTRTTRQISLTGAGALVA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E+ ++ G+L + + G LL G + F L YP IQ+ + Sbjct: 67 ARYRPVLEDFDRVTQEITSATHPDRGRLSLNAPLSFGMRLLPGLIDSFRLAYPQIQVDVQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI + D AIR+ P S I R++ + A P P + ELD Sbjct: 127 LTDTLVDIIDESCDLAIRISGPPTDKSTIWRRICMVPRAIVAGPALFDRISVPQNPDELD 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 ++ +++G P+ + F IG R + + N+ ++ G+G+ Sbjct: 187 PNHCLSYGTGKPETWKMFR--------IGTARTFRAGTEIVSNNGELLLALAAAGNGMVN 238 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 LP ++V+D N +V ++ D + YP + F +F RD++ Sbjct: 239 LPRFLVQDAINKKKVVEVLPDWDLSPLNLMLYYPPYDALPPLIATFSDFFEAYIRDFE 296 >gi|116049912|ref|YP_791279.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585133|gb|ABJ11148.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 311 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L F V G F A + + +S +SR+I+ LE + ++L +R R L LT Sbjct: 1 MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + E + + E SV+P G+LR++ + + + L L FL +P Sbjct: 61 EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +Q++++L N+ +D+ + D A+R+R+ + +L+ R+L AAP + R Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHR- 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232 L E D +L G + D AT+ P G EPR L V+ ++ Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230 Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V G G+ LLP+ Y ++ + +LVRI+ P T+ Y L + ++ A R Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287 Query: 290 I 290 I Sbjct: 288 I 288 >gi|325121821|gb|ADY81344.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 131/262 (50%), Gaps = 16/262 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A ++ S++S+ IS LE +G++L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + L+ EL++S P G++RI T+ + L + F YP I+ Sbjct: 71 YEQGIQILNNLD----ELEQSVTANHMPQGRIRIHTSFSYWTHFLLPCISLFNERYPQIE 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ L ++ I++ D AIR P++SS+L+ R L + H +P Y++ P Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTQKHYVCSPTYIEKNGYPQHP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H L+ + ++ WL D+ I L+VN +I+Q + G+GIA Sbjct: 186 EQLYEHQLLD----VSYQRQNKTWLFKKDDQEITLAPTKVLRVNHGEAILQLALAGAGIA 241 Query: 243 LLPDYIVK---DNPNLVRIMED 261 L + VK + LV+I+ED Sbjct: 242 QLNQFQVKKALEQKQLVKILED 263 >gi|301025851|ref|ZP_07189341.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|331675011|ref|ZP_08375768.1| putative transcriptional regulator LYSR-type [Escherichia coli TA280] gi|300395817|gb|EFJ79355.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|331067920|gb|EGI39318.1| putative transcriptional regulator LYSR-type [Escherichia coli TA280] Length = 323 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + + A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 314 >gi|195873787|ref|ZP_02698999.2| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|204928657|ref|ZP_03219856.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205359577|ref|ZP_02830572.2| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360334|ref|ZP_02682632.2| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|195632270|gb|EDX50754.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|204322090|gb|EDZ07288.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205344560|gb|EDZ31324.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350333|gb|EDZ36964.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320088026|emb|CBY97788.1| probable RuBisCO transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 300 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275 >gi|323525206|ref|YP_004227359.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382208|gb|ADX54299.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 308 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 136/289 (47%), Gaps = 13/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F A+E + ++ +SR I+ LE + I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDAGTFAAASEVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + GKLRI + + +L L F+ +P++ I+ I Sbjct: 74 VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTILGQPLDAFMDAHPELDIECIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187 + D+ MD D A+R +P ++S+LI RKL+ + AAP Y+ P + L+ Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-RASTLIARKLLDTPIVTVAAPSYVARHGRPAKPEGLESR 192 Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242 H + F + P+ + F W R + + R L VN +++ C+ GSGIA Sbjct: 193 SHRCLEFRN--PETGKPFQWEFHRRRKRLVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + ++ D L+ + + + +Y YP K +AF +FI Sbjct: 250 LLGAEPLIADG-RLINLFPEWTDERYPLYAYYPSRHHVPAKTRAFLDFI 297 >gi|269959929|ref|ZP_06174306.1| Transcriptional regulator, LysR family [Vibrio harveyi 1DA3] gi|269835228|gb|EEZ89310.1| Transcriptional regulator, LysR family [Vibrio harveyi 1DA3] Length = 295 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 33/288 (11%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S+IS++I LE ++G++L R R ++ TE Sbjct: 1 MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + + P+G L+I T+ +G L L +FL YPD Sbjct: 61 AGALFYERAKVQLDSWQSVLDETRSVNESPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120 Query: 122 IQIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I++QLI L + ++S+D R + + S S L YAAP YL+ Sbjct: 121 IKLQLITTLPGQIPELSLDL--FISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHGT 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISC---LQVNSYLS 230 P SI+EL +HN++ +G ++P+ E R+S + + Sbjct: 179 PQSIEELSQHNVLIWG----------------EKPVREIKTNRGKRVSLSGNFATTNPEA 222 Query: 231 IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + G GI L + ++K++ LV I+ D+ TVY YP+ Sbjct: 223 LFHGAKRGMGILLSNNVMIKEDLRSGALVPILPDITADEATVYAYYPK 270 >gi|260778094|ref|ZP_05886987.1| transcriptional regulator LysR family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260606107|gb|EEX32392.1| transcriptional regulator LysR family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 302 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 138/300 (46%), Gaps = 19/300 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++ + L +F V +GS + AA++L +SS+SR I+ LE + IKL R++R L LT Sbjct: 1 MDWNLNDLPIFIAVTETGSVSKAAKRLGNQKSSVSRAINRLEESLNIKLLERNSRHLNLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L+ + L + I+ Q S G LRIATT + +L NLK F YP Sbjct: 61 SDGEQLYNQLKPLMQNL--SAIKEQVPSQSLCGTLRIATTFAFSREILSPNLKAFTERYP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DIQ+ + + + D D AI+L + S ++L + + + P YL Sbjct: 119 DIQLSIRSMSHRAHLLEDKLDLAIQL-GDLAPSGFYAKRLTVVKLLWFCTPEYL------ 171 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL------QVNSYLSIMQY 234 L+ EL L T + E N + + + + + Q++ L + Sbjct: 172 LANPELQSATLETLQQHVSFYHEQENNQSVLYSTMTDGSKQTIEFKHANQLDDVLLVRDM 231 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG++LLPD + + LV+I ++ + P + Y ++ +LKA NF+ Sbjct: 232 VASGSGVSLLPDIYCRQLCRDGKLVQIAHELNVLPHVNISAVYASKTTHSPRLKAMLNFM 291 >gi|254486690|ref|ZP_05099895.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] gi|214043559|gb|EEB84197.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 142/286 (49%), Gaps = 11/286 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V ++ SF AA L ++ S++S+Q+ LE ++ +KL R R +++TE+G+ Sbjct: 6 RVGVFIAVVKAQSFAGAARSLGITSSAVSKQVQNLEQDLQVKLLNRTTRNVSVTEEGAVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L+ Q ++ E +P G L+I+ + LG + F YP++ + + Sbjct: 66 YEGAARALEDLQEAQEQIYELKSRPRGPLKISFPLSLGNKYFGQAIASFAAQYPEVDLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD + +DI + D A+R+ ++ +SL+ R++ + A+ YL+ P + +L Sbjct: 126 SLDERFVDIVNEGFDLAVRI-GSLKDTSLVARRMASCPFVICASAGYLETHGTPQTPGDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245 HN++ F + ++ + + IG+ + + +S + + G GIA+LP Sbjct: 185 ADHNVLAFTG--NSGLHEWRYQDATGQ-IGQVSLRGNFKADSGEILCSAALQGVGIAILP 241 Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCY-PEALKNTGKLKAF 286 + V + L ++ D +T P +Y + P ++T +L+ F Sbjct: 242 VFYVAKHLKTRKLQAVLPDYVTSPKRDIYAVFQPNRFQST-RLRLF 286 >gi|167588545|ref|ZP_02380933.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 299 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 6/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ +R F V GS + AA L ++Q + R ++ LE G LF R GL TE Sbjct: 5 LNWELIRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTEA 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 L + + SG +RI+ + +G +L L + +P + Sbjct: 65 ALALRGHAETLRSAAAAFERAAASHGAGVSGVVRISASDVIGVEVLPPMLTQLRRDHPGL 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L ++ D+ AD A+R+ P Q +L+ R++ I + YA YL P + Sbjct: 125 VVELAPTDRIQDVLNREADIAVRMAPPAQ-DALVARRIGNIELGMYARDDYLAEHGAPAT 183 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL +H LI F + P F A PI L+ +S L+ + G GI Sbjct: 184 LAELAQHALIGFDAMTP-----FLRAAAHALPIWNRDAFALRTDSNLAQLALIRAGYGIG 238 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + K + LVR++ D + + E L+ + + +A Sbjct: 239 ICQTALAKRDARLVRVLPDQVVLPLETWVVMHEDLRASPRCRA 281 >gi|313111304|ref|ZP_07797122.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310883624|gb|EFQ42218.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 311 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L F V G F A + + +S +SR+I+ LE + ++L +R R L LT Sbjct: 1 MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLVLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + E + + E SV+P G+LR++ + + + L L FL +P Sbjct: 61 EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +Q++++L N+ +D+ + D A+R+R+ + +L+ R+L AAP + R Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHR- 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232 L E D +L G + D AT+ P G EPR L V+ ++ Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230 Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V G G+ LLP+ Y ++ + +LVRI+ P T+ Y L + ++ A R Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287 Query: 290 I 290 I Sbjct: 288 I 288 >gi|310766950|gb|ADP11900.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia sp. Ejp617] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 14/191 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V SFT AA+ L + + ++S+ I LE ++G+KL +R R L++T +G Sbjct: 11 IFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEG------ 64 Query: 70 TSEVYHKLETTQIELQE--SSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 E+Y + +T ++ E +SV P+ G+LRI + L +L +L EF LYP I+ Sbjct: 65 -DEIYQRAKTLLNDVNEMMASVSPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIE 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L ++ D+ + DC IRL + + SS I R++ + M AAP YL P++ Sbjct: 124 IVLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTP 182 Query: 184 QELDKHNLITF 194 +L H I F Sbjct: 183 DDLVHHKAIHF 193 >gi|289667709|ref|ZP_06488784.1| LysR family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 321 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 21/283 (7%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 G F A L + +S +SR+IS LET++G++L R R +T+ G+ +HR + + Sbjct: 5 GGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVGTSVHRHAQTMLAEA 64 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 + + + S +P G +R++ + L Q L L +FL YP +++QL + N+ +D+ Sbjct: 65 QAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPQFLAKYPKVRLQLNISNRRVDVIN 124 Query: 138 DYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196 + D A+R+R + SL+ R + A+P YL P EL H ++ + Sbjct: 125 EGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRTGRPKDPSELANHTTMSTSE 184 Query: 197 LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGIALLPDYIVK 250 ++ + + P GE R LQ L+ + +L G GI +LP+ + Sbjct: 185 ------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMARDGFGITMLPETVCA 236 Query: 251 DNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 + VR E +V+ P +++ C+ G L A R FI Sbjct: 237 EA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 276 >gi|218702286|ref|YP_002409915.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|331659828|ref|ZP_08360766.1| putative transcriptional regulator LYSR-type [Escherichia coli TA206] gi|218372272|emb|CAR20135.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|315295795|gb|EFU55112.1| LysR substrate binding domain protein [Escherichia coli MS 16-3] gi|331053043|gb|EGI25076.1| putative transcriptional regulator LYSR-type [Escherichia coli TA206] Length = 323 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL L+P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + + A+PHYL P S +L Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLA 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|218677013|ref|YP_002395832.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32] gi|218325281|emb|CAV27279.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32] Length = 299 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 138/303 (45%), Gaps = 33/303 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA SFT AAE L +S+ +SR + +E + +L +R R ++LT G Sbjct: 8 MRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTAAGEIAL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ H+ ++ + SG +RIA I L QN+L +++F L+P+I ++L Sbjct: 68 QRCEKILHETAELEVTSLNQTDDLSGVIRIAAPIGLTQNMLLDVVEQFTELHPNITVELF 127 Query: 128 -------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 L ++ IDI++ Y D +P SLI RKL+ I A+ YL EP Sbjct: 128 ASDRFAQLVDERIDIALRYTD------QP--DDSLIARKLMEIDSVVCASQDYLDKHGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239 +++ L +HN + + W D +S ++ N + + G Sbjct: 180 ETVEALRQHNCF-------RHLSVSKWDFVKDNQHYSVEVSGTIKANDVGVLTRAAQHGK 232 Query: 240 GIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GI LP + NP L RI++D ++PS ++ Y L + +L R FI A Sbjct: 233 GIVRLPCDLA--NPLIAGGKLKRILDDFVSPSSVLWAVY---LSRSYQLPIVRQFIDFAA 287 Query: 295 RDW 297 W Sbjct: 288 EVW 290 >gi|254255376|ref|ZP_04948692.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124901113|gb|EAY71863.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 305 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF + +GSFT A++ L+ +S +S LE +G +L R R ++LTE G Sbjct: 6 SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V +++ + + ++ P G+L++ + + ++ L FL +P I I+L Sbjct: 66 YERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPGIMIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ + DC +R+ + S +I +++ ++ +P Y + EP ++ +L Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCGSPGYFERFGEPQTVDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 +H + + W VD GE RI + VN + + V G G+ Sbjct: 185 AQH--VAVSHISADTGRPRAWDYVVD---GETRIVQMCGTVAVNDADNYIACGVAGIGLI 239 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+ + L ++ D P+ + YP KLK F +++ Sbjct: 240 KTSLYLVEPYLQSGRLREVLTDFNAPARPISVLYPPNRHTPVKLKVFVDWL 290 >gi|254437458|ref|ZP_05050952.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198252904|gb|EDY77218.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 310 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/295 (22%), Positives = 136/295 (46%), Gaps = 28/295 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++ F + +G+ T A+ + L+ S++SR++ LE +G L +R R +L+ +G Sbjct: 5 DEIETFVAIVDAGTLTEASRRSGLALSAVSRRLRDLEARMGTTLIHRSTRTFSLSSEGQD 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ L+ + +L+++ + +G++RIA + L L EF+ L+P+++I Sbjct: 65 FYLRCKQILSDLQEAETDLRDTKGRITGRIRIAAPLTFSVLHLSPILNEFMTLHPEVEID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++++ +D+ + D AIR+ + + SS + ++L I AP ++ +P ++ Sbjct: 125 LDVNDRQVDLVAEGFDLAIRIGR-LSDSSFLAKRLTRIRHVPTVAPSLIERLGQPERPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L +T+ P F RP G R + V L+ + + G Sbjct: 184 LTDFPALTYRSSGPGTEWRFV------RPDG--RKGSVTVKGTLACNNGDVLRSAAIAGL 235 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF--------TVYFCYPEALKNTGKLKAF 286 G+A P +I I++ ++TP F Y +P T +++A Sbjct: 236 GVAFEPTFICGPA-----ILDGLLTPLFFDHTWSENAAYAVFPPGRAQTARVRAL 285 >gi|293607528|ref|ZP_06689863.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814099|gb|EFF73245.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 310 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 15/290 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V + +F A+E L +S +SR I+ LE ++ I+LF R R ++LTE+G + + Sbjct: 14 VFAAVVDAKTFAAASEVLGMSPPGVSRAIARLEEKLKIRLFNRTTRSVSLTEEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + GKLR+ + +L L EF+ +P+++I+ I Sbjct: 74 VMPHLAGLEEAAAAAAGGASAVRGKLRVNLDPVFYRIILGQRLNEFMDAHPELEIEFIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + D+ MD D A+R +P ++S+LI RKL+ + AAP Y+ P +EL+ Sbjct: 134 DSLGDLVMDGFDLALRFGEP-KTSTLIARKLLDSGIVTVAAPSYIARWGRPAKPEELESG 192 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGIA-- 242 N P+ + F W R RI L VN +++ C+ G G+A Sbjct: 193 NHRCLEFRNPETGKPFPWEFHRRR----KRILVDTQGRLTVNDPSALLNACLAGFGVAQM 248 Query: 243 --LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L ++++ + LV + + + Y YP K +AF +F+ Sbjct: 249 LVLGAEHLIAEG-RLVNLFPEWTDERYPFYAYYPSRHHMPAKTRAFLDFV 297 >gi|86358410|ref|YP_470302.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282512|gb|ABC91575.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 300 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 32/305 (10%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V G F+ AA ++ S++S+ ++ LE +G +L R R L LT +G Sbjct: 11 EMEVFVSVVERGGFSAAATARRMTPSAVSKLVARLEARLGARLVNRSTRKLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + E Q SS + SG++RI T+ G ++L + F+ L+ + + Sbjct: 71 YERSIAILADI--AEAERQASSGEQASGRIRINTSGSFGNHVLAPLVPAFMALHSAVTLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + AD AIR P+++SSLI RKL A+P Y+ EP S+ + Sbjct: 129 ITHTDRIVDLMEERADVAIRT-GPLKNSSLIARKLGATGKLIVASPDYISRHGEPRSVAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD----RPIGE----PRISCLQVNSYLSIMQYCVL 237 L +H C F++ V+ R GE P +QV ++ + Sbjct: 188 LSRH-----------CRIGFSYARAVEGWPLREDGETVTVPITPGVQVGDGEAMRHLALS 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+A L + V+ D +LV ++E I + VY L G+++A +F+ Sbjct: 237 GAGLARLAAFTVRADIDAGHLVPVLEAANPGDIEEFYAVYMGQGGPLP--GRVRALLDFL 294 Query: 291 FLKAR 295 R Sbjct: 295 VKHVR 299 >gi|88859450|ref|ZP_01134090.1| Transcriptional regulator, LysR family protein [Pseudoalteromonas tunicata D2] gi|88818467|gb|EAR28282.1| Transcriptional regulator, LysR family protein [Pseudoalteromonas tunicata D2] Length = 299 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 1 MSFDW--DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 M F++ D +R F VA+ GSF A+ L + S++SR+++ LE ++ I+L R A + Sbjct: 1 MKFNYSLDDMRCFCAVAQYGSFKQASAALEIPLSTLSRRVAKLEEDLAIRLLNRDAHRVQ 60 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 LT G + ++ ++ ++ +LE + LQ+ + G +RI+ ++ G ++L + FL+ Sbjct: 61 LTHSGQRYYQRSASLFEELEDVAVCLQQDKTQAKGTIRISAPVNFGVHVLAQHFNAFLIE 120 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRL 146 YPDI + L L N++IDI + D A R+ Sbjct: 121 YPDIHLDLRLSNQNIDIEEEAIDIAFRV 148 >gi|325526806|gb|EGD04305.1| LysR family regulatory protein [Burkholderia sp. TJI49] Length = 288 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/291 (21%), Positives = 134/291 (46%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + SGSFT AA+QL + ++S ++ + LE +G +L R R ++ T G+ + Sbjct: 1 MRLFTCIVDSGSFTRAAQQLGMQRASATQIMKQLEAHLGARLLVRTTRHVSPTLDGAAYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + ++ P G L++ + ++ L +F YP + + + Sbjct: 61 QRCVDILDGIDEAEASFSHAARHPQGALKVDLASSFARLVVIPALPDFFARYPQVTLDIS 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D++ + DC +R+ + + SSL+ R++ + A+P YL P ++ L Sbjct: 121 IGDRRVDLARESVDCVVRIGE-LTDSSLVARRVGMLEQVTCASPGYLARYGRPRNLAALA 179 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 KH + + G +P + T + P + + VN+ + + C G GI Sbjct: 180 KHREVAYVSASSGKRVPLVFSVDGRVETRELP------ASVSVNNGDAYVAACEAGLGIV 233 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V L I+ V P + YP + +L+ F +++ Sbjct: 234 QVPRYHVVGQLQRGTLTEILTRVRPPPLPLSVLYPHRGHLSPRLRVFIDWV 284 >gi|260599102|ref|YP_003211673.1| hypothetical protein CTU_33100 [Cronobacter turicensis z3032] gi|260218279|emb|CBA33234.1| hypothetical protein CTU_33100 [Cronobacter turicensis z3032] Length = 308 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 142/299 (47%), Gaps = 27/299 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +L +F V + SFT AA L +++ +S I LE+E+G+ L R R LTLT+ G + Sbjct: 12 SRLAMFVAVVDAKSFTGAAAALGQTKAVVSFNIRQLESELGVTLLLRSTRRLTLTDAGER 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ + + ++Q S SG+LR+ TT + +++ L F +P ++I+ Sbjct: 72 LYQRSLLLLRNAGELLEDVQASHEGFSGELRVTTTPEYASHVVGPALAAFSRAHPALRIR 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D+ + D AIRL +Q S+ + + A+P +L+ R P+S E Sbjct: 132 HFSSSQHADLISERVDVAIRL-GTLQDSAYRAALISRFDIFPVASPAWLE--RHPISTPE 188 Query: 186 -LDKHNLITFGDLIPKCMEDFNWLAT----------VDRPIGEPRISCLQVNSYLSIMQY 234 L + + + W T + RP P I+ + ++M + Sbjct: 189 ALSQAQWLVH----TRLASPLRWALTGPHDETLWFEITRP---PAIAA---DGAGALMSF 238 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G+ALLP ++V + LVR++ P+ VY YP+A +GK++ F +F+ Sbjct: 239 ALEGCGVALLPAWLVNTALEEGKLVRLLPAYRFPAQGVYAVYPDARHVSGKVRGFIDFL 297 >gi|157373290|ref|YP_001471890.1| LyrR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157315664|gb|ABV34762.1| transcriptional regulator, LyrR family [Shewanella sediminis HAW-EB3] Length = 301 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 142/294 (48%), Gaps = 22/294 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GS T AA +L +S+S +S+ + LE +L +R R + LTE G Sbjct: 10 RMLVFANVVEQGSLTAAANELGISRSMVSQHLKKLELRCATQLIHRTTRKMALTEDGQSF 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPS-----GKLRIATTIDLG-QNLLQGNLKEFLLLYP 120 + +E+ + E+S KP G ++I+ + LG QNL+Q ++ +F YP Sbjct: 70 YHYCAELLQLAKQA-----ENSTKPQDRELQGSIKISAPVCLGEQNLIQ-HIGDFNKRYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+I L L+++ +++ + D AI+ + + +S+ +L + A+P Y++ P Sbjct: 124 KIRITLRLEDRRLNLLENNIDIAIQTEQATEFTSI---RLGQFDEYLIASPEYVEQHGSP 180 Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L L KH ++ + +PK N + P ISC NS I++ G Sbjct: 181 LHPDMLAKHQWIMQSSNYLPKSCLLQNSFGDKFKIKINPFISC---NSNHGIVKLAKQGL 237 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LP Y+V+ ++ V I+ D +Y +P +++AF NFI Sbjct: 238 GIAILPSYLVQAQIESGKFVHILPDYHLREGVIYAVHPFDDVTPPRVRAFLNFI 291 >gi|254240977|ref|ZP_04934299.1| hypothetical protein PA2G_01658 [Pseudomonas aeruginosa 2192] gi|126194355|gb|EAZ58418.1| hypothetical protein PA2G_01658 [Pseudomonas aeruginosa 2192] Length = 305 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 9/269 (3%) Query: 26 QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85 Q++LS +++S+ ++ LE + ++L R R ++LTE G + + LE L Sbjct: 29 QMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAALT 88 Query: 86 ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145 PSG LR++ + L L + FL YPD++++L+L + D+ + D A+R Sbjct: 89 SMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLALR 148 Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205 + S L+ R L+ + AAP YL +PL + L +H I F Sbjct: 149 GSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALREHECIRFS----LSGHAD 204 Query: 206 NWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED 261 W R I P +V+S L++ + G G++L+P V+ LV ++ D Sbjct: 205 RWTFRKGRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLAD 264 Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ YP + + GK + F +F+ Sbjct: 265 WKADETAIHAVYP-SRQLAGKTRVFLDFL 292 >gi|87120661|ref|ZP_01076554.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86163889|gb|EAQ65161.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 300 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 145/282 (51%), Gaps = 13/282 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L +F + + AA +L++S ++I+R++ LE + +L +R AR LT +G Sbjct: 2 YDDLNLFIQIVQHQGLAKAATKLNMSAATITRRLQKLEQTLNTQLVHRSARQFVLTPEGQ 61 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ +LE ++ L S + G L++ T ++ LQ F+ YPDI++ Sbjct: 62 TYYQTYEPIFEQLEASKNALDMESQETCGSLKVFTPTNISLGFLQPMWSAFIKQYPDIRL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L+N+ D+ AD A+R+ P S L Q+KL ++ AAP YL EP +++ Sbjct: 122 ELQLNNQREDLLAAKADIALRI-GPQSDSQLYQKKLGSLSTLFVAAPSYLTLKGEPQTLE 180 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL++H L+ L P N ++T + P+IS L N I + G GI+LL Sbjct: 181 ELEEHTLLATHTL-PNW--QLNQISTGRSCVYHPKISTL-TNDISLITHFVCDGLGISLL 236 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 P +D + +V++++D P ++ A+ +TG+L Sbjct: 237 PINEARDHLASGRIVQVLKDWKGPERELF-----AVWSTGRL 273 >gi|209518365|ref|ZP_03267189.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501184|gb|EEA01216.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 305 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 1/192 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F + SGSF AA + + Q ++S+QI+ LE +G +L R +R +TLTE G Sbjct: 5 DALKLFIRIVESGSFAAAARDMGVGQPAVSKQIASLERYLGAQLVRRTSRSMTLTETGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + + V P+G +R+ G+ + L F YP + + Sbjct: 65 VYEAGLRIIGDFTELESSVGHGQVSPAGLVRVTVAPVFGRLYVVPRLPAFFSRYPHVSVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++++ + D +I+ P+ SS+I R L + + A P YL+ P Q+ Sbjct: 125 LSATERNVNLVEEGFDLSIK-SGPLADSSMIARHLASSPVVVVATPDYLEKYGRPERPQD 183 Query: 186 LDKHNLITFGDL 197 LD+H + F + Sbjct: 184 LDRHACVVFAPM 195 >gi|186472197|ref|YP_001859539.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184194529|gb|ACC72493.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 308 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 102/201 (50%), Gaps = 7/201 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +G+F+ AA QL + S++SRQI LE +G +L R R + +T+ G++++ Sbjct: 13 MATFARVVDAGNFSEAARQLGSTPSTVSRQIKRLEESLGTRLLERSTRRIRVTDAGAQVY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++ +S +P GK+ I+ I ++++ + EFL +PD+ +QL+ Sbjct: 73 RYCRDIVGAASGAVDVAGQSVGEPRGKVSISAPIAFARSVIHPLIPEFLRSWPDVDVQLV 132 Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++++D D D IRL R P L R+L T+ A+P YL P ++L Sbjct: 133 FADREVDPLRDDVDIVIRLTRSP--PLGLAARRLGTVRWLLCASPAYLDAHGTPAEPRDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H + G+ + +D W Sbjct: 191 ARHECLYLGETV----DDNRW 207 >gi|27380654|ref|NP_772183.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27353819|dbj|BAC50808.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 286 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 19/293 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW LR+F +AR G+ AA ++ +Q ++ R++ LET +G LF R A G LT++ Sbjct: 4 MDWSDLRIFLAIAREGTLGAAARKIGQTQPTMGRRLRALETALGQTLFQRTADGFVLTDE 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + R + + + + + G LR++++ G +L + F +P + Sbjct: 64 GTAVLRHAERIEEEALALERHATGAETQLDGLLRLSSSDWFGTVMLSPVIAAFGKRHPKV 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ D + + AD R+ KP +I RKL+ I Y K + P + Sbjct: 124 TVELLTDARLYSLPRREADLVFRI-KPFSEPEVISRKLLHIPYALYGK----KGSKPPRA 178 Query: 183 IQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238 +I F D M D WL V PR + N+ + + C G Sbjct: 179 GDGSGVRVVIMNAEFAD-----MPDAVWLKRV-----LPRAEIASRSNNRQAQAELCAGG 228 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 SG+A+LP + + LV + P + Y LK G+L+A + + Sbjct: 229 SGLAVLPRPLGDRDRRLVALDIGSTPPGRDTFVGYHRDLKRLGRLRAMLDLVI 281 >gi|53716359|ref|YP_105184.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|124382889|ref|YP_001025559.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|254359358|ref|ZP_04975630.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52422329|gb|AAU45899.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|148028545|gb|EDK86505.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|261827027|gb|ABM99766.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] Length = 315 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 15 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 75 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 130 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 + ID +S D D AIR P +L L + A AAP YL Sbjct: 131 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 179 >gi|77463520|ref|YP_353024.1| LysR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462376|ref|YP_001043490.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|77387938|gb|ABA79123.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides 2.4.1] gi|126104040|gb|ABN76718.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17029] Length = 297 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 130/271 (47%), Gaps = 12/271 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR+F VAR+ S + A L L +++ R+I+ LE +G+ LF + +G LTE Sbjct: 1 MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + +LQ + SG++RI LL L + P + Sbjct: 61 GQRLLAHAERAEQAVGEAAEDLQ-GAAGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++Q++ + ++S AD AI + +P ++ L +KL +H A+ YL + Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178 Query: 183 IQELDKHNLITF-GDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++L H L+ + D+I K ++ L + P +S +Q+N + G+G Sbjct: 179 LEDLKAHQLVGYIPDMIFDKELDYLTGLGSGSVPFASNSVS-VQLN-------WLRAGAG 230 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271 + ++ D+ + P LV+I+ + ++ S + + Sbjct: 231 VGIVHDFAMPSAPELVKILPEALSLSRSFWL 261 >gi|323976713|gb|EGB71801.1| LysR substrate binding domain-containing protein [Escherichia coli TW10509] Length = 302 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 26/302 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQ 233 +P +L H + F P + F+W + I I V++ L + Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVAGNIILDDVDAELDAV- 230 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288 ++G+GI L +K D L ++ED IT P F +Y YP + L+AF + Sbjct: 231 --LMGAGIGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIY--YPNRQYMSCGLRAFLD 286 Query: 289 FI 290 ++ Sbjct: 287 YV 288 >gi|260466513|ref|ZP_05812702.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259029662|gb|EEW30949.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 310 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%) Query: 6 DKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L AR+GS +T AA L +S S++S+ I LE +G+ LF R R LT T + Sbjct: 8 DRLTGIIAFARAGSLGSYTAAARALSISPSAVSKSIQRLERHLGLSLFTRTTRSLTFTPE 67 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G LH + + E + + +PSG LR+A ++ +G +L+ L F L+P++ Sbjct: 68 GRDLHERALRLLREAEEIEQAAMTARSEPSGTLRVAASLPIGLHLIAPALPAFRRLHPNL 127 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L ++ +D+ + D AIR+ + + L+ RKL + +A+P YL+ P Sbjct: 128 VVDLRLGDQTVDMIEEGIDVAIRIGD-LADTRLLSRKLAPHRLCCFASPAYLEERGTPTH 186 Query: 183 IQELDKHNLITF 194 +L H+ + Sbjct: 187 PDDLVGHDTVNL 198 >gi|288960176|ref|YP_003450516.1| transcriptional regulator [Azospirillum sp. B510] gi|288912484|dbj|BAI73972.1| transcriptional regulator [Azospirillum sp. B510] Length = 306 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 1/185 (0%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F V GSFT AA L +S S++S+ I LE +G+ L R R LTLT +G +L+ Sbjct: 15 AFARVGSLGSFTAAARSLSVSPSAVSKSIQRLEQTLGLSLISRTTRSLTLTPEGRELYER 74 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + + + +S +PSG LR+A ++ +G +++ L EF +YP + I L L+ Sbjct: 75 ALRLLREADEIEQVAKAASSEPSGPLRVAASLPIGIHMIAPALPEFRRIYPRVTIDLRLN 134 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI D A+R+ + + S L+ +L + +A+P YL P +L +H Sbjct: 135 DQFVDIVEAGIDIAVRIGE-LADSRLLSCRLAPHRLCCFASPAYLAARGTPAHPDDLARH 193 Query: 190 NLITF 194 I+ Sbjct: 194 ETISL 198 >gi|218673176|ref|ZP_03522845.1| LysR family regulatory protein [Rhizobium etli GR56] Length = 247 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 101/182 (55%), Gaps = 1/182 (0%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A SGSFT AA +L L+ +++S+ + LE ++G++LF R R + LT +G + + Sbjct: 13 FVESAASGSFTAAAARLDLTPAAVSKNVMQLEQQLGVRLFNRSTRKIVLTAEGREFAQRA 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 SEV L+ ++ + + +G++RI+ +G+ + L +P +++++ LDN Sbjct: 73 SEVLRALDDAVSDVSRAGGEAAGRVRISVGASIGRRYVLPLLPSLAAAHPRLELEVSLDN 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D +R I+ SSLI R++ + M A+P YL+ P + +L H+ Sbjct: 133 RAVDLVAEGFDIGVR-GGVIRDSSLIARRVCRLPMVLVASPGYLQRHGIPRTPADLAAHS 191 Query: 191 LI 192 L+ Sbjct: 192 LL 193 >gi|213418103|ref|ZP_03351172.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 294 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 4/237 (1%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G ++ + H++ Sbjct: 2 GSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYYQGCRRMLHEV 61 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 + +L + P G LRI + + QN+L G + L YP + + L+ D+ Sbjct: 62 QDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLVTGIPAPDLIA 121 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 D D IR+ +Q SSL R+L + M AA YL P +L H+ + + Sbjct: 122 DGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLSSHSWLEYSVR 180 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN 254 E R I + R N ++++++ G+GIA +P V D N Sbjct: 181 PDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLMWVIDEIN 234 >gi|107023034|ref|YP_621361.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686725|ref|YP_839972.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105893223|gb|ABF76388.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652440|gb|ABK13079.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 301 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 134/304 (44%), Gaps = 22/304 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L L+ SS+ R + LE +G L R R +TL++ G+ Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V +L + + PSG LR++ + G L ++ F+ +P + + Sbjct: 64 VYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPKLDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ D AIRL ++ ++ R L T + A+ YL P + Sbjct: 124 DLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPATPG 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------G 238 EL H + F + + F +G R + + V L VL G Sbjct: 184 ELVDHACLRFHFGVDQQTWTF---------VGAQRTTQVVVTGRLKSNHSEVLREAALDG 234 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291 +GIALLPD++V + L R+ + +TP + Y + + ++ AF +F+ Sbjct: 235 AGIALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVE 294 Query: 292 LKAR 295 AR Sbjct: 295 SLAR 298 >gi|311104983|ref|YP_003977836.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310759672|gb|ADP15121.1| bacterial regulatory helix-turn-helix protein, LysR family protein 51 [Achromobacter xylosoxidans A8] Length = 301 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 11/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GS + AA L +S++ +SR ++ +E VG++L +R R L+LT G++ Sbjct: 7 MQVFVEVADRGSLSAAAIHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTPAGAETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + + P G LRI T++ G L + +++ L+P + L+ Sbjct: 67 PRCRQMLDMVGDLRNAVSTPDDTPRGLLRITTSMSFGSRHLASAITDYVKLHPGTSVDLM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D A+R+ + +LI RKL A+P YL+ P I++L Sbjct: 127 LVDRAVNLVEERVDLAVRITNDLD-PNLIARKLAVCRSVVCASPEYLQREGVPARIEDLS 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 N +T FG + + D P+ P + N + + + G+GIA+L Sbjct: 186 LRNCLTHSYFGKSLWRFERDGE-------PVDVPVSGNISANEVSVLSRAALEGAGIAML 238 Query: 245 PDYIVKDN 252 P Y D+ Sbjct: 239 PTYYAADD 246 >gi|229846784|ref|ZP_04466891.1| putative HTH-type transcriptional regulator [Haemophilus influenzae 7P49H1] gi|229810273|gb|EEP45992.1| putative HTH-type transcriptional regulator [Haemophilus influenzae 7P49H1] Length = 305 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGIM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKTGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|71901256|ref|ZP_00683356.1| regulatory protein, LysR:LysR, substrate-binding [Xylella fastidiosa Ann-1] gi|71728989|gb|EAO31120.1| regulatory protein, LysR:LysR, substrate-binding [Xylella fastidiosa Ann-1] Length = 301 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 13/279 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +++F V +G F A ++L L++S+I + I+ LE +G++LF R R +LTE G Sbjct: 5 FDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLTEDGQ 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L + L++ + +G+L ++ + G++ + L+ + +P +++ Sbjct: 65 QYYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRHCVAPILRTYAREHPQLEL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + +D+ D D A+R ++L R+L A+P YL +P ++ Sbjct: 125 ELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKPHTLA 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 +L H+L+T+ C D N T+ G P S L+ N I V G G Sbjct: 185 DLADHDLLTY------CRNDRNMAWTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 +A LP +++ + L+ I D + + +P A Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVIECHVVWPAA 277 >gi|309780410|ref|ZP_07675160.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308920803|gb|EFP66450.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 298 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 20/287 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q ++ R + LE +G+ LF R +GL+ TE Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFIRTQQGLSPTEAAL 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L LE T L ++ G +RI + + +L L + YP Sbjct: 68 SLR----PFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++L+ N+ D+ AD A+R+ P Q L+ R L I + +A YL P Sbjct: 124 ELTLELVPSNRMEDLLRREADIAVRMHPPSQ-GVLVARHLGGIELGLFAHQRYLAQRGMP 182 Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +I+EL H LI + + F W+ + L+ +S L+ + Sbjct: 183 TTIEELAGHTLIGYDKENAFLRSMRAQFPWV--------QRNRFALRTDSDLAAIAALRA 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G GI + + N +LVR+ + I + + E L+++ + + Sbjct: 235 GFGIGFCQVGLARHNADLVRLFSEQIAITLDTWLAMHEDLRDSPRCR 281 >gi|152969908|ref|YP_001335017.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894441|ref|YP_002919175.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|150954757|gb|ABR76787.1| putative transcriptional regulator, LysR family [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546757|dbj|BAH63108.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 301 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++V+ V + SF AAE L +S++SR + LE +G +L R R L++T +G + Sbjct: 5 DAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + S +P+G+ ++ L ++ + + EFL YPD+++ Sbjct: 65 YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + DI + DC IR + S++L+ R L A+P +L P SI E Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQSIDE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H + G L + +WL ++D R+ L V+ + +Q + G G+ + Sbjct: 185 LHQHRAV--GYLNHRTGRTIDWLFSLDEGDCAIRMRETLVVDDTDAYIQAGIQGLGLIRV 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+ + + LV +E + + YP+ ++AF ++ Sbjct: 243 ASYLAQPYLQSGALVACLEQAAS-DLPLSLVYPQNRYLPPAVRAFYDW 289 >gi|197337625|ref|YP_002158576.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197314877|gb|ACH64326.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 302 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 142/280 (50%), Gaps = 19/280 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DW +F VA+ SF+ AA +L + +++SR+I LE+++G +LF R+ R + LT Sbjct: 2 MNEDW---LLFAKVAQYQSFSEAARRLSVPTTTVSRRIQNLESQLGERLFIRNTRSVVLT 58 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L T + L ++ S + SGKL+++T+ L Q L+ + F L YP Sbjct: 59 ELGQRLLPKTKLLEMALGELHSTIESHSQEISGKLKLSTSDTLSQFLIPNLISTFSLQYP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + N++ + + D + R+ ++ S+LI KL I AAP +++N Sbjct: 119 LINFDISSSNRNEQLLNENIDFSFRI-GLLEDSNLIAYKLCEIEYVLVAAPSFIENSTID 177 Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +++ L +H I G +P C+ + + ++R + R+ L + L+ Sbjct: 178 ITLDTLIQHPCIIINIDGKEVPWCVSSDDHVLELNRH-KKYRVDNLFIAKSLA-----EA 231 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV---ITPSFTVYF 271 GSGIALLP ++ K+ LV I+++V P +YF Sbjct: 232 GSGIALLPKFVAKEAIRTNTLVTILDNVNIQKNPLSLIYF 271 >gi|194364417|ref|YP_002027027.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347221|gb|ACF50344.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 305 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 17/279 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F A +GSFT AAE+LHL+ S++ + ++ LE +G +LF R R L LTE G + Sbjct: 10 IEAFVATAEAGSFTAAAERLHLTSSAVGKTVARLEARLGARLFERSTRRLRLTEAGEGFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R V +L + L + P G+LR+ G+ + L + +P ++ Q+ Sbjct: 70 RTCVRVLGELADAESVLAAHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPRLRPQVT 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ID++ D D A+R+ P ++L R L + A+P YL+ P S EL Sbjct: 130 FSDRFIDLAEDGVDLAVRIGGPEPLPATLGSRLLGHECLRFCASPAYLQRHGLPTSGAEL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSIMQYCVLGSG 240 H+ + FG + D G R + LQ V S + + G G Sbjct: 190 ADHDGVLFG----RADGSIGPWQVAD---GGQRSAPLQARARLVVGSAEAQVAAVEAGFG 242 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 IA L ++V D +LV I+ + + +P+ Sbjct: 243 IAQLATWLVDDALARGSLVSILPALDCRGLPLRLLWPQG 281 >gi|254248915|ref|ZP_04942235.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124875416|gb|EAY65406.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 325 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 130/294 (44%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F R SFT AA +LHL+QS+ISRQI LE +G LF R R L LT G + Sbjct: 34 LVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 92 Query: 68 RVTSEVYHKLETTQIELQESSVKPSG--KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++V+H L T E +KP G +L IA + + L L F YP+I+++ Sbjct: 93 --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPSFRAAYPNIKLR 149 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI+ + +S D + + + R+L + AP YL L + Sbjct: 150 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 207 Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L L+ D + M W L VDR +P+ + +NSY I+Q +LG G++L Sbjct: 208 LANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 265 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 Y++ + LVR+ E + Y P + F ++F +A Sbjct: 266 GWRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQA 319 >gi|209550967|ref|YP_002282884.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536723|gb|ACI56658.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 297 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 140/292 (47%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121 +R S++ +++ ++E++ + G+LRI+ D+GQ+L+ +F PD Sbjct: 66 YRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFSRENPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + +++ D++ +D+ + D AIR+ K ++ S +I RK+ +H P +L+ R P Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCVTPDFLE--RHPD 177 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 D N+ D + + + ++VNS + ++ + G GI Sbjct: 178 LAHPSDISNVPFIVDTNSRTQASIRFHNPDNTSFSVAVSGPMEVNSPHATLRAALAGIGI 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL+PD+I + ++ LV + D + +Y YP K++ F +++ Sbjct: 238 ALIPDFIARKPIESGELVTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYL 289 >gi|90579068|ref|ZP_01234878.1| hypothetical D-serine deaminase activator [Vibrio angustum S14] gi|90439901|gb|EAS65082.1| hypothetical D-serine deaminase activator [Vibrio angustum S14] Length = 301 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F + A SFT AAE L L+QS++S +I LE +G++LF R R L LT++G +L Sbjct: 14 LHCFLIAAEQMSFTRAAEVLFLTQSAVSHKIKNLEEALGVQLFIRQPRKLILTDEGFRLK 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V + + + +L+ +V+ SG + I+ Q L LK F+ LYP ++I L Sbjct: 74 QVLAANFGDIAHEIRDLK--NVELSGDINISVPPTFAQTWLLPRLKSFIDLYPMLRIHLR 131 Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 N+ +D + DCAI K + S L+ + + H YA + L + E L I Sbjct: 132 TRNELVDFQTESFDCAIYFGKGEYQGLHSCKLMDEAMQPVCSHDYAIANDLYDNPEGL-I 190 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242 Q L H+ + + + W ++ + P C S L+ +Q G G+A Sbjct: 191 QCLLLHDAAPWA----RAGRNDEWQLWAEQYGTQLPESECTFDRSDLA-LQAAECGIGVA 245 Query: 243 LLPDYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291 + + + R++ D++ PS F+ Y ++NT K+KAF +++F Sbjct: 246 MGRHSFIAERLVEKRLVTPFDMMAPSPFSYYVVCRHNMQNTPKIKAFSDWLF 297 >gi|15804065|ref|NP_290101.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 EDL933] gi|15833655|ref|NP_312428.1| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. Sakai] gi|168746941|ref|ZP_02771963.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4113] gi|168753333|ref|ZP_02778340.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|168759604|ref|ZP_02784611.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|168765928|ref|ZP_02790935.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|168772525|ref|ZP_02797532.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|168779664|ref|ZP_02804671.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|168785386|ref|ZP_02810393.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|168797351|ref|ZP_02822358.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|195935049|ref|ZP_03080431.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EC4024] gi|208808869|ref|ZP_03251206.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|208812456|ref|ZP_03253785.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208821989|ref|ZP_03262309.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209396325|ref|YP_002273000.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|217324528|ref|ZP_03440612.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|261224836|ref|ZP_05939117.1| transcriptional regulator, LysR family protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254267|ref|ZP_05946800.1| transcriptional regulator, LysR family protein [Escherichia coli O157:H7 str. FRIK966] gi|291284893|ref|YP_003501711.1| putative transcriptional regulator LYSR-type [Escherichia coli O55:H7 str. CB9615] gi|12518233|gb|AAG58662.1|AE005577_7 putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EDL933] gi|13363875|dbj|BAB37824.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. Sakai] gi|187771430|gb|EDU35274.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|188018447|gb|EDU56569.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4113] gi|189002420|gb|EDU71406.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|189358954|gb|EDU77373.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|189364423|gb|EDU82842.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|189369864|gb|EDU88280.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|189374461|gb|EDU92877.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|189380120|gb|EDU98536.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|208728670|gb|EDZ78271.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|208733733|gb|EDZ82420.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208742112|gb|EDZ89794.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209157725|gb|ACI35158.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|209755508|gb|ACI76066.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209755510|gb|ACI76067.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209755512|gb|ACI76068.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209755514|gb|ACI76069.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209755516|gb|ACI76070.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|217320749|gb|EEC29173.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|290764766|gb|ADD58727.1| putative transcriptional regulator LYSR-type [Escherichia coli O55:H7 str. CB9615] gi|320191432|gb|EFW66082.1| LysR family transcriptional regulator YhjC [Escherichia coli O157:H7 str. EC1212] gi|320639837|gb|EFX09431.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320645337|gb|EFX14353.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320650648|gb|EFX19114.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320655842|gb|EFX23765.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661624|gb|EFX29039.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320666647|gb|EFX33630.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] gi|326337481|gb|EGD61316.1| LysR family transcriptional regulator YhjC [Escherichia coli O157:H7 str. 1044] gi|326340007|gb|EGD63814.1| LysR family transcriptional regulator YhjC [Escherichia coli O157:H7 str. 1125] Length = 323 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 31 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL +L EFL +P I+++L Sbjct: 91 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPHLSEFLYQHPGIELELS 150 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I R L + M A+PHYL P + +L Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQNPDDLT 209 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314 >gi|83746965|ref|ZP_00944011.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|83726385|gb|EAP73517.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 298 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 20/283 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q + R + LE +G LF R +GL+ TE Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L R +E LE+T L ++ G +RI + + +L L + YP Sbjct: 68 AL-RPYAE---SLESTSAALLRAASSQGEGVRGTVRITASEVVTGEVLPAILADLHAAYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L+ N+ D+ AD A+R+++P Q LI R + I + +A YL+ P Sbjct: 124 GLTLELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTP 182 Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++ +L H LI + I W+ DR L+ +S L+ + Sbjct: 183 ATLDDLAGHALIGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRA 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 G GI + + + +P+LVR+ D + P + E L+++ Sbjct: 235 GFGIGICQVGLARRDPDLVRLFADEVAPVLDTWLAMHEDLRDS 277 >gi|15601735|ref|NP_233366.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587016|ref|ZP_01676794.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|121726358|ref|ZP_01679632.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|147671871|ref|YP_001215098.1| LysR family transcriptional regulator [Vibrio cholerae O395] gi|153212206|ref|ZP_01948001.1| transcriptional regulator, LysR family [Vibrio cholerae 1587] gi|153801819|ref|ZP_01956405.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] gi|153818185|ref|ZP_01970852.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|153821081|ref|ZP_01973748.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|153824692|ref|ZP_01977359.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] gi|153827885|ref|ZP_01980552.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] gi|227812547|ref|YP_002812557.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|229505883|ref|ZP_04395392.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286] gi|229510263|ref|ZP_04399743.1| transcriptional regulator LysR family [Vibrio cholerae B33] gi|229514390|ref|ZP_04403851.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21] gi|229517606|ref|ZP_04407051.1| transcriptional regulator LysR family [Vibrio cholerae RC9] gi|229522503|ref|ZP_04411919.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80] gi|229528123|ref|ZP_04417514.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)] gi|229605416|ref|YP_002876120.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236] gi|254224726|ref|ZP_04918342.1| transcriptional regulator, LysR family [Vibrio cholerae V51] gi|254284605|ref|ZP_04959572.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|254850145|ref|ZP_05239495.1| transcriptional regulator [Vibrio cholerae MO10] gi|255746283|ref|ZP_05420230.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|262158164|ref|ZP_06029282.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1] gi|262169237|ref|ZP_06036930.1| transcriptional regulator LysR family [Vibrio cholerae RC27] gi|9658422|gb|AAF96878.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548751|gb|EAX58798.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80] gi|121631106|gb|EAX63481.1| transcriptional regulator, LysR family [Vibrio cholerae V52] gi|124116758|gb|EAY35578.1| transcriptional regulator, LysR family [Vibrio cholerae 1587] gi|124122653|gb|EAY41396.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3] gi|125622789|gb|EAZ51107.1| transcriptional regulator, LysR family [Vibrio cholerae V51] gi|126511291|gb|EAZ73885.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457] gi|126521455|gb|EAZ78678.1| transcriptional regulator, LysR family [Vibrio cholerae B33] gi|146314254|gb|ABQ18794.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|148876730|gb|EDL74865.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39] gi|149741648|gb|EDM55677.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2] gi|150425390|gb|EDN17166.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226] gi|227011689|gb|ACP07900.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2] gi|227015627|gb|ACP11836.1| transcriptional regulator, LysR family [Vibrio cholerae O395] gi|229334485|gb|EEN99970.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)] gi|229340488|gb|EEO05494.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80] gi|229345642|gb|EEO10615.1| transcriptional regulator LysR family [Vibrio cholerae RC9] gi|229348370|gb|EEO13328.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21] gi|229352708|gb|EEO17648.1| transcriptional regulator LysR family [Vibrio cholerae B33] gi|229356234|gb|EEO21152.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286] gi|229371902|gb|ACQ62324.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236] gi|254845850|gb|EET24264.1| transcriptional regulator [Vibrio cholerae MO10] gi|255736037|gb|EET91435.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101] gi|262022518|gb|EEY41226.1| transcriptional regulator LysR family [Vibrio cholerae RC27] gi|262030042|gb|EEY48688.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1] gi|327485952|gb|AEA80358.1| Predicted Lactate-responsive regulator, LysR family [Vibrio cholerae LMA3894-4] Length = 299 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +HN + + + +F N++ V ++ ++ + + G Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV + + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272 >gi|242312659|ref|ZP_04811676.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|242135898|gb|EES22301.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] Length = 358 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + L R R L LT G + Sbjct: 28 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTHLMNRSTRRLALTPAGERY 87 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 88 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 147 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 148 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHAAPRTPRDL 207 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 208 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 308 >gi|116253452|ref|YP_769290.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258100|emb|CAK09201.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 12/248 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +G F+ AAE+LHL++S++ + I+ LE +G++LF R R +LTE+G + Sbjct: 9 IFVEAVEAGGFSAAAERLHLTRSAVGKTIARLEQRLGVRLFNRTTRMQSLTEEGRFFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + L+ G+LRI+ + G++ + L L +P++++ L + Sbjct: 69 CLRAVEEIRLGEAMLESGRRDVRGRLRISMPVLFGRHCIAPILARLLDEHPNLELDLSFN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ D D IR + L+ R + M AAP YL+ P ++ ++ +H Sbjct: 129 DRIVDLLEDGFDLVIRNGPLKDNPDLMVRAIARQRMTVCAAPAYLEKHGAPQTVFDIPQH 188 Query: 190 NLITF--GDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244 I + GD +D W+ G P+ + L+++ SI V G G+A L Sbjct: 189 EGIVYRRGD------DDKGWIFPTATDPGRRLAPK-ARLRLDDLASISDAAVAGRGLAWL 241 Query: 245 PDYIVKDN 252 P ++V++ Sbjct: 242 PCWLVREE 249 >gi|126172500|ref|YP_001048649.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|125995705|gb|ABN59780.1| transcriptional regulator, LysR family [Shewanella baltica OS155] Length = 307 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 135/288 (46%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SFT A+ L LS++ +S ++ ET +G +L R R + LT+ G + Sbjct: 8 MQIFMRVAELQSFTQASASLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + Q + + SG+LR+ + + +NL+ L EF+ YP I+++L Sbjct: 68 ERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVLPKLAEFIEQYPHIELELS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC IR+ +Q LI +K+ M +P Y+ +P S+++L Sbjct: 128 STDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKMGHFKMLNCVSPAYIAKYGKPESLEDLT 186 Query: 188 KHN--LITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 HN L+ + + F + + I P++ + VN+ + C+ G GI Sbjct: 187 LHNHKLVHYVSQLGGTDSGFEYQDPHTHQANLTIQLPKL--ITVNNADAYSSACLAGLGI 244 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P V LV I+++ P V YP + +L+ F Sbjct: 245 IQVPSIGVAKYLHTGELVEILQNYPAPPMPVSLLYPHRRHLSKRLQVF 292 >gi|53723130|ref|YP_112115.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|167744055|ref|ZP_02416829.1| LysR family transcriptional regulator [Burkholderia pseudomallei 14] gi|167821255|ref|ZP_02452935.1| LysR family transcriptional regulator [Burkholderia pseudomallei 91] gi|167851075|ref|ZP_02476583.1| LysR family transcriptional regulator [Burkholderia pseudomallei B7210] gi|167899705|ref|ZP_02487106.1| LysR family transcriptional regulator [Burkholderia pseudomallei 7894] gi|167916361|ref|ZP_02503452.1| LysR family transcriptional regulator [Burkholderia pseudomallei 112] gi|167924220|ref|ZP_02511311.1| LysR family transcriptional regulator [Burkholderia pseudomallei BCC215] gi|237507950|ref|ZP_04520665.1| LysR family transcriptional regulator [Burkholderia pseudomallei MSHR346] gi|254300788|ref|ZP_04968232.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|52213544|emb|CAH39597.1| putative LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|157810913|gb|EDO88083.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|235000155|gb|EEP49579.1| LysR family transcriptional regulator [Burkholderia pseudomallei MSHR346] Length = 313 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 + ID +S D D AIR P +L L + A AAP YL Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 177 >gi|157372626|ref|YP_001480615.1| putative DNA-binding transcriptional regulator [Serratia proteamaculans 568] gi|157324390|gb|ABV43487.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 303 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + ++ +L + P+G LRI ++ + QN+L + L YP + + L Sbjct: 66 YQGCRRMLLEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR +Q SSL ++L ++ M AA YL PL Sbjct: 126 VTGIPAPDLIADGLDVVIRT-GALQDSSLFSKRLGSMPMVVCAAKSYLSQHGTPLK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233 P M +F+WL RP E RIS N ++++ Sbjct: 181 ------------PSDMVNFSWLEYSVRPDSEFELIAPEGISTRISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|254253025|ref|ZP_04946343.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124895634|gb|EAY69514.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 323 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 13/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VAR SF AA +L ++ S++S+ + LE+ +G LF R R + LTE G + Sbjct: 13 DGVEAFLSVARHRSFRRAAAELGVTPSAVSQVVRALESRIGTALFIRTTRSVGLTEAGER 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L +E +P+G LR++ + LL+ + F YP+I+++ Sbjct: 73 FLSRAKPAFEELVAASDAARELGRRPAGLLRLSVPRAVVPILLEPLIASFCNAYPEIEVE 132 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + K +D++ + D +RL + + + + +P Y + P I + Sbjct: 133 IDASEKLVDLAAEGFDAGMRLGQFVAADMVAVPLTPPFRFVVVGSPAYFADHDRPERIDD 192 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H + + G L P +D T++ + P L + +++ + G G+ Sbjct: 193 LRGHACVRWRRSNGALAPWSFDDGGR--TIEAAVSGP----LVARDFPTVLGAALEGVGL 246 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A LP+ +V + LV+++E V+ YP + KL+AF Sbjct: 247 AQLPEPMVAEGLKAGKLVQVLEPFAPMMPGVFLYYPSRRQIAPKLRAF 294 >gi|67642578|ref|ZP_00441332.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|121597929|ref|YP_991169.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|126447274|ref|YP_001077632.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|167002418|ref|ZP_02268208.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254177440|ref|ZP_04884096.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254203127|ref|ZP_04909489.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254208461|ref|ZP_04914810.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|121225727|gb|ABM49258.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|126240128|gb|ABO03240.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|147746172|gb|EDK53250.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147751148|gb|EDK58216.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|160698480|gb|EDP88450.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|238523759|gb|EEP87195.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|243061902|gb|EES44088.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] Length = 313 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 + ID +S D D AIR P +L L + A AAP YL Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 177 >gi|269965003|ref|ZP_06179168.1| putative transcriptional regulator [Vibrio alginolyticus 40B] gi|269830306|gb|EEZ84531.1| putative transcriptional regulator [Vibrio alginolyticus 40B] Length = 318 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GSF AA+ S++S+ I LE+++GI+LF R R LTE G + Sbjct: 7 LRFFIATLDGGSFAAAAKVYGTDPSTVSKAIHRLESDLGIQLFQRSTRQSRLTEAGRRYA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + L+ + SG+L+I + G+ ++ LKEF YP+I I + Sbjct: 67 NTARFVLEELAACEDSLKSHNDALSGQLKINVPVSYGRLYIRPLLKEFCRRYPNITIDIH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +DI D +IR + S LI R+L I A+ YL P + Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVHDSQLIVRQLSPIEFIICASQDYLARHGVPSGPDVFN 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F G L+P M + + + D P + + VN S+ + C G G+ Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGASEYD-----PERNYI-VNDGESMAELCAEGLGLT 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +I +D + LV I + VY Y +++ F +FI Sbjct: 240 QIPHFIARDWLKSGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290 >gi|237808739|ref|YP_002893179.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237501000|gb|ACQ93593.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 297 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 8/268 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +A+ GSFT AA +L +SQS++S I LE + ++LF R R ++L++ G +L + Sbjct: 11 LFIALAQEGSFTKAAAKLGMSQSALSHAIKALEERIKLRLFNRTTRSVSLSDAGERLLTI 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++E L E K +G +R++++ Q ++ +K+F YPDI++++ ++ Sbjct: 71 IEPRFTEIEDELQLLNEDYHKAAGNIRLSSSDYAAQYIIWPVVKQFAKEYPDIKVEINVE 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 NK DI + D +R + + R I P YL+ EPL +L KH Sbjct: 131 NKLTDIVTERYDAGVRFGDQVAKDMIAVRISPDIRFLIVCTPAYLEGKSEPLIPDDLLKH 190 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248 I M + W D + R+ NS ++ + G A LPD + Sbjct: 191 QCINMRLNSNGGM--YAWEFERDGKSSKLRVHGQFAFNSPNQVLDATLDNFGFAYLPDTM 248 Query: 249 VK---DNPNLVRIMED--VITPSFTVYF 271 V + LV ++++ +TP +Y+ Sbjct: 249 VNKYLEAGQLVSVLKEWSPLTPGLHLYY 276 >gi|218515811|ref|ZP_03512651.1| probable transcriptional regulator protein, LysR family [Rhizobium etli 8C-3] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 14/250 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GSF + + LS+S+ + + LE +G +L R R L+LT++G + Sbjct: 11 IFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEGRLFYEH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 EV ++ + + S P G LR+ G+ ++ ++++LL +PDIQ+++ Sbjct: 71 GLEVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQVEVNFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ DI + D AIR+ +S L+ R + A+P YL + EP I +L Sbjct: 131 DRKADIVEEGFDLAIRIGAMPSASENGLLSRVIAADRARLCASPFYLADRGEPCHIDDLA 190 Query: 188 KHNLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F + D W+ R S L+++S +I V G GIA Sbjct: 191 AHDCLVFSSRDQRQGWRFRGNDGAWVKAQGR-------SRLRLDSSEAIRDAAVAGLGIA 243 Query: 243 LLPDYIVKDN 252 LLP ++ + Sbjct: 244 LLPGFLAAGD 253 >gi|163803696|ref|ZP_02197557.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4] gi|159172507|gb|EDP57371.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQISGLET++G+ L R R L LT G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLETQMGVTLLTRTTRTLRLTHAGERFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + + + ++ I + + G +R+ +G++++ + EF+L YP+I + L Sbjct: 70 QECEKALYNIDQALIAAVDDIQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYPNITVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D AIR+ + ++ + + KL+ I M A+P+YL+ EP++ ++L Sbjct: 130 DFSSPRIDLIEDQFDVAIRMGE-LEDAGFVASKLMMIDMATLASPNYLEIHGEPVTPKDL 188 Query: 187 DKHNLIT 193 KH +T Sbjct: 189 AKHRTLT 195 >gi|148557216|ref|YP_001264798.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502406|gb|ABQ70660.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 307 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 11/293 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + LR+F G F AA L L +S +SR+I+ LE +G++L R R ++TE G Sbjct: 3 DLNDLRLFVQAVDHGGFAAAARALGLQKSKLSRRIALLEERLGVRLIQRSTRRFSITEIG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + +R + + E Q + +S +P G +R++ L L F+ LYPD++ Sbjct: 63 QEYYRRCVAMLVEAEAAQAVIDQSRSEPRGVVRLSCPTGLLAFQFGELLGRFMALYPDVE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + N+ +D+ + D AIR+R P+ S L+ R+ + AAP L R + Sbjct: 123 LHVESTNRRVDVIGEGFDLAIRVRPPPLAESELVMRRFDERTIRIVAAPALL-TARLVAA 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240 +L + + FG D W LA D + E R V +++++ L G+G Sbjct: 182 PADLSELPTLDFG----PARGDHRWRLAHADGRVAEVRHKPRLVTDDMAVLREAALTGAG 237 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP V D+ LV ++ + + V+ +P ++A +FI Sbjct: 238 AVRLPTLAVWDDLQSGKLVTLLPEWRPANEIVHAVFPSRRGLLPSVRALLDFI 290 >gi|83718032|ref|YP_438446.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|257141495|ref|ZP_05589757.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83651857|gb|ABC35921.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 317 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 114/253 (45%), Gaps = 16/253 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA LHL+QS+IS+QI LE +G LF RHARGL LT +GS L+ Sbjct: 13 LRCFEAAGRLGSFTKAAGALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGSVLY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATATAFGSLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLSEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID + D D AIR P +L L ++ A AAP YL + + Sbjct: 129 AEFHAIDRETMRADDIDVAIRW-DPFDYRALHVEPLFDEYLVAAAAPAYLGRHPPRATAK 187 Query: 185 ELDK----HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + H+ + D P+ +E WL A V GE R + S + V G Sbjct: 188 WISSVVPLHDASAWPD-APRYVEWRTWLDAVVPGYAGELRGPEFNLASL--AIGAAVAGQ 244 Query: 240 GIALLPDYIVKDN 252 G+ + + +V D Sbjct: 245 GVVVCREALVNDE 257 >gi|109897697|ref|YP_660952.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699978|gb|ABG39898.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica T6c] Length = 293 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 22/292 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++L +F VA+ SFT AA+ L +S+ +S QI LE ++ LF R R ++LTE+G+ Sbjct: 8 FERLILFSEVAKQLSFTRAAQVLSISRGYLSEQIRKLEQDMDKHLFIRSTRHVSLTEEGA 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L +++ L + E++ + G+LRI Q + EF YP I + Sbjct: 68 QLLAGMNQIKRSLLALEREIRHDNDALEGELRITAPNQFAQRYILDLCAEFQACYPAISV 127 Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + D+S + D A R K P Q +++ +KL A+P YL EP I Sbjct: 128 SVDCSYTTYDLSQNDFDLAFRATKAPPQ--NMVAKKLFNYRHTCCASPEYLAKHGEPKRI 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 ++L H + PK F E ++ S L VN + ++ V G G Sbjct: 186 EDLGAHICLCQS---PKTHWQF----------AEHKVNINSQLAVNDNFILKKHAVAGKG 232 Query: 241 IAL---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 I L + LV ++ ++P F +Y +P+ + + +LKAF F Sbjct: 233 IILVPEYVVEEEVSSGELVPLLGSALSPDFAMYLIHPQLIHQSARLKAFIAF 284 >gi|262191955|ref|ZP_06050122.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93] gi|262032189|gb|EEY50760.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93] Length = 299 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +HN + + + +F N++ V ++ ++ + + G Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGVKGNYIVKVS--------GTFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV + + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272 >gi|260778786|ref|ZP_05887678.1| hypothetical transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260604950|gb|EEX31245.1| hypothetical transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 307 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 1/181 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L + V+ SGSF AAE+LH+ +S +S+QI LE +G++L R R L LT G Sbjct: 5 NRLEMLLEVSESGSFAKAAERLHMDRSVLSKQIKKLEETLGVRLLNRSTRSLALTSAGQD 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V L T+ +P G LRI++ G+ LQ +++F+ YP I I+ Sbjct: 65 IVHQARKVRELLADTRNIADTYHNEPKGHLRISSATVFGRMYLQPAIEKFMAKYPQITIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LILD++ +D+ + D R+ K +Q S+L+ +K+ A+ +++ P + +E Sbjct: 125 LILDDRRVDVIGERFDVVFRIGK-LQDSNLVAKKIAPNDFSLLASREFVELHGNPETPEE 183 Query: 186 L 186 L Sbjct: 184 L 184 >gi|254184488|ref|ZP_04891077.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|184215080|gb|EDU12061.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 315 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF RHARGL LT +G LH Sbjct: 15 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T + L T +L P L+++ L L EF L+P ++L Sbjct: 75 EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 130 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 + ID +S D D AIR P +L L + A AAP YL Sbjct: 131 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 179 >gi|157373096|ref|YP_001481085.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157324860|gb|ABV43957.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 297 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 11/255 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A SF A E+L +S S++ + ++ LE +G++LF R R + LTE+G+ Sbjct: 7 LLAFVRAAELHSFVAAGERLGISASAVGKSVARLEESLGVRLFNRSTRRINLTEEGALFF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E + E+ S P GKLR++ +G +L L +F LYP++++ + Sbjct: 67 ERCQRIVSEIENAEAEMARISDAPRGKLRVSMPA-IGYRMLVPLLADFSELYPEVELDVD 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D A+R + S L+ R+L + AP Y + P ++L Sbjct: 126 FNDRMVDLIAEGIDVAVR-SGDLADSRLMARRLGPFRLILAGAPEYFQRRGMPQVPEDLL 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLGSGIAL 243 H + + P + W D GEP R+ L NS +++ G GIA Sbjct: 185 SHACLRY--RYPGGQQLQEWTLFAD---GEPVSLRVPVTLSCNSIEALIHATQEGLGIAY 239 Query: 244 LPDYIVKDNPNLVRI 258 LPD+ + N R+ Sbjct: 240 LPDFTLCQAANAGRL 254 >gi|104781378|ref|YP_607876.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110365|emb|CAK15073.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 305 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 14/265 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++ F VA SF AA L S S+++R + LE G KLF R A ++LTE G +L Sbjct: 8 EIQAFVSVAHKRSFISAARSLGRSPSAVTRAVQTLEDNTGAKLFNRSASAVSLTEAGERL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + EL + G +R+A L Q++L L EF +P + + + Sbjct: 68 LPHAERLLDVQRDAADELAALTGSAQGWIRLAAPEVLAQHVLPSVLAEFSQRHPKVTLDV 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D D IR P QSS LI L + YA+P YL + P ++ EL Sbjct: 128 QFGDQALDPLQGKFDFVIRGAFP-QSSELIGYPLWAYRRYLYASPRYLASAGTPTTLDEL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++H LI P+ ++ +++ T RP +PR L++ S ++++Q + G+GIA Sbjct: 187 ERHALILH--TAPRILKAWHFCREGQITSLRP--QPR---LRLGSGVAVLQSTLAGAGIA 239 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF 267 L D++ + + R+++ I P + Sbjct: 240 RLADWLAEPHVQAGRLVK--ICPQY 262 >gi|254227398|ref|ZP_04920830.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|262396337|ref|YP_003288190.1| transcriptional regulator [Vibrio sp. Ex25] gi|151940010|gb|EDN58836.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|262339931|gb|ACY53725.1| transcriptional regulator [Vibrio sp. Ex25] Length = 318 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GSF AA+ S++S+ I LE+++GI+LF R R + LTE G + Sbjct: 7 LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAGRRYA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + L+ + SG L+I + G+ ++ LKEF YP I I + Sbjct: 67 NTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +DI D +IR +Q S LI R+L I A+ YL P + Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICASQDYLARHGVPSGPDVFN 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F G L+P M + + + + P + + VN S+ + C G G+ Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGASEYN-----PERNFI-VNDGESMAELCAEGLGLT 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +I +D + LV I + VY Y +++ F +FI Sbjct: 240 QIPHFIARDWLKSGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290 >gi|262403056|ref|ZP_06079616.1| transcriptional regulator LysR family [Vibrio sp. RC586] gi|297579977|ref|ZP_06941904.1| transcriptional regulator [Vibrio cholerae RC385] gi|262350555|gb|EEY99688.1| transcriptional regulator LysR family [Vibrio sp. RC586] gi|297535623|gb|EFH74457.1| transcriptional regulator [Vibrio cholerae RC385] Length = 299 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +HN + + + +F N++ V ++ ++ + + G Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV + + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272 >gi|309973048|gb|ADO96249.1| Putative LysR-family transcriptional regulator [Haemophilus influenzae R2846] Length = 305 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGIM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKTGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|87121606|ref|ZP_01077494.1| putative transcriptional regulatory protein (LysR family protein) [Marinomonas sp. MED121] gi|86163138|gb|EAQ64415.1| putative transcriptional regulatory protein (LysR family protein) [Marinomonas sp. MED121] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 141/298 (47%), Gaps = 18/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ ++ F V GSFT AA+ + SS+SR++S LE ++G L R R + LTE G Sbjct: 3 EFKAIKYFIKVVELGSFTQAAQHFQVPASSLSRRVSDLEKQLGASLLKRSTRVVKLTEIG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S+ ++ S + + E T ++ KP G L+++ GQ +L L E + LYPDI Sbjct: 63 SQYYQDVSLLLSQFEKTNDAVRSYQAKPMGMLKVSAMTGFGQRVLLPLLDELVQLYPDII 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + L ++ +S D D A R + + + KL+ H A+ Y + +P + Sbjct: 123 LDVHLTDELSSLSHDEVDIAFR-GGYVPNERINAVKLMDNHFIPVASTAYFERYGKPSHV 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL H + + PK WL+ ++ + + C S+L ++ + G G Sbjct: 182 SELKNHRGLYY--RTPKGHTP--WLSELEGQWQDVSAKIQVCSNEGSWL--IEKAIQGEG 235 Query: 241 IALLPDYIVKD---NPNLVRI-MEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFI 290 I +LP +++ + L+ + E+ +T P F ++ Y + + K+K +FI Sbjct: 236 ILMLPKWVLMEYISKGELIELKFENEVTVSPNPDFGIFLLYQKQRYHVPKVKVAVDFI 293 >gi|239503574|ref|ZP_04662884.1| LysR substrate binding domain protein [Acinetobacter baumannii AB900] Length = 311 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 132/296 (44%), Gaps = 20/296 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + L+ RKL+ I A P YL P Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPKYLAKHGTPNHPHN 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-----G 240 L +H I G+ F G IS Y + L + G Sbjct: 190 LKQHECIYLGEQASDSKWKFQQ--------GNKSISVAVRGRYAANHTGVRLSAALQHLG 241 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290 IA LP ++ + LV+++ D ++ ++ YP KL F ++ Sbjct: 242 IASLPYFVARHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVFIQYL 297 >gi|156935112|ref|YP_001439028.1| hypothetical protein ESA_02963 [Cronobacter sakazakii ATCC BAA-894] gi|156533366|gb|ABU78192.1| hypothetical protein ESA_02963 [Cronobacter sakazakii ATCC BAA-894] Length = 311 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 15/250 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F V SF+ A + +S S ISR + LE +G +LFYR+ R + TE G Sbjct: 12 LQLFISVFDGQSFSAVARREGVSASMISRTVRQLEEALGQQLFYRNTRAVIPTEAGRLFA 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ELQ+ S++PSG LRI + GQ + L YP +Q+ L Sbjct: 72 QYARGITEQFSEARRELQDRSLEPSGLLRINAPVFFGQRHIAPWLTGLAERYPRLQLALT 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D D D +R+ + SS R + AAP YL P S +EL Sbjct: 132 QTDDYVDPHRDATDLIVRIGT-LTDSSFHARVFCEQRYYFAAAPRYLARYGAPASPEELQ 190 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGI 241 H + + G P WLA R GEP + + L N+ S++ + G G+ Sbjct: 191 AHQCLVYSGSSGPN-----RWLA---RKPGEPWVHYPVNARLVSNNAHSLLTAALDGMGL 242 Query: 242 ALLPDYIVKD 251 L PD++ + Sbjct: 243 VLFPDWMTGE 252 >gi|254672004|emb|CBA04502.1| Transcriptional regulator [Neisseria meningitidis alpha275] Length = 430 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF V +SG FT AA+ L +S + S+ +S LE V KL +R++R L+LT G + + Sbjct: 7 LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R S L+ + + KP G LR+ + + + L E+ YP++ ++LI Sbjct: 67 RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LDN+ +D+ + D A+R+ + + S SLI R L I A+P +L+ P + +E+ Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184 >gi|194364837|ref|YP_002027447.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347641|gb|ACF50764.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 324 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 11/294 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +A SFT AA+++ +S+ ++S+ + LE ++G++L +R R ++LTE+G +L Sbjct: 15 LAGFAHIAHHRSFTKAADEMGISRPALSQNLKTLEKQLGVRLLHRTTREMSLTEEGQRLF 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +E L+ + PSG LRI T + L++ +L EF +P+++I+L+ Sbjct: 75 DALRPSLGTIEAAVRGLRANHDAPSGLLRINTARLTAKTLIEPHLPEFFARFPELRIELV 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ I D D IRL + + + + M A+PHYL P + EL Sbjct: 135 MDDGLSSIVADGCDAGIRLGERLAEGMIAVPVTPMLEMVVAASPHYLARHGTPTTPAELA 194 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242 H + + + W +T +P EPR + N +++ + G G+ Sbjct: 195 SHECLGYRQT--GSGNIYAWEFSTPGQPGHDFEVEPRGRYVS-NDDEGMIRAALQGLGVM 251 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 D ++ + LVR+M + TP Y P + +++A F+ K Sbjct: 252 QHIDLSLQPMLADGRLVRLMPEWSTPFPGFYLYVPSREQMPPRVRALMEFLIEK 305 >gi|66048147|ref|YP_237988.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63258854|gb|AAY39950.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 300 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 129/267 (48%), Gaps = 14/267 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +GSF+ A L L Q ++SR ++ LE + +L +R R L LT +G + + Sbjct: 15 FVRAVETGSFSAAGRDLGLGQPNVSRYVAALEDHLQTRLLHRSTRKLMLTPEGERYYADA 74 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +E ++ L+ +V PSG LR+A L + ++ FL YP++ + L +++ Sbjct: 75 LRILDSVEQSESSLR-GNVAPSGLLRVACPTALAHTFIVPHVASFLARYPELSLDLQIND 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +++ + + AIR+ ++ S++ R L + A+ YL+ P S +L +H+ Sbjct: 134 RYVNLIDEGVELAIRIGH-LEDSAMRARPLASFERVCVASRAYLEKRGSPSSPDDLKEHD 192 Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + L NW D P+ L+VNS +I +Y G GIA P ++ Sbjct: 193 CLIYTLLSTGT----NWRFKNTDVPVS----GRLRVNSPEAIREYVNAGLGIAQGPQWLY 244 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273 ++ + NL ++ + + P + F Y Sbjct: 245 EEGLRSGNLQLLLNEYVAPPVPIQFVY 271 >gi|193077071|gb|ABO11829.2| putative transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 311 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGVIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + L+ RKL+ I A P YL P + Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLSKHGTPNHPHD 189 Query: 186 LDKHNLITFGD 196 L +H I G+ Sbjct: 190 LKQHECIYLGE 200 >gi|156977509|ref|YP_001448415.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116] gi|156529103|gb|ABU74188.1| hypothetical protein VIBHAR_06296 [Vibrio harveyi ATCC BAA-1116] Length = 295 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 33/288 (11%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S+IS++I LE ++G++L R R ++ TE Sbjct: 1 MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + + P+G L+I T+ +G L L +FL YPD Sbjct: 61 AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120 Query: 122 IQIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I++QLI L + ++S+D R + + S S L YAAP YL+ Sbjct: 121 IKLQLITTLPGQIPELSLDL--FISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHGT 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISC---LQVNSYLS 230 P S++EL +HN++ +G ++P+ E RIS + + Sbjct: 179 PHSVEELSQHNVLIWG----------------EKPVREIKTNHGKRISLSGNFATTNPEA 222 Query: 231 IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + G GI L + ++K++ LV I+ D+ TVY YP+ Sbjct: 223 LFHGAKRGMGILLSNNVMIKEDLRSGALVPILPDITADEATVYAYYPK 270 >gi|27367205|ref|NP_762732.1| putative Lactate-responsive regulator, LysR family [Vibrio vulnificus CMCP6] gi|27358773|gb|AAO07722.1| Predicted Lactate-responsive regulator, LysR family [Vibrio vulnificus CMCP6] Length = 299 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 8/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE+ L+ S +S++I+ LE E+G +L YR R LTLTE G Sbjct: 4 DDLILFSQVVEQGSFSKVAEENSLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF +P + + Sbjct: 64 LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNQHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +P+ + Sbjct: 124 MSLDNRFVDLVSGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPVIPSD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L +HN + + E W ++ R++ C ++ ++ + + G GIA + Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKGEKGNYIVRVAGCFSTDNATALRKAALGGHGIAYV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P +V N LV I + + +Y YP Sbjct: 240 PRCLVYHDFRNGQLVDIFPEQVGKKLGIYAVYP 272 >gi|254250715|ref|ZP_04944034.1| LysR family regulatory protein [Burkholderia cenocepacia PC184] gi|124879849|gb|EAY67205.1| LysR family regulatory protein [Burkholderia cenocepacia PC184] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 22/304 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + LR F VA +G F+ A +L L+ SS+ R + LE +G L R R +TL++ G+ Sbjct: 4 FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + V +L + + PSG LR++ + G L ++ F+ +P + + Sbjct: 64 VYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPKLDL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ D AIRL ++ ++ R L T + A+ YL P + Sbjct: 124 DLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPATPA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------G 238 EL H + F + + F +G R + + V + VL G Sbjct: 184 ELVDHACLRFHFGVDQQTWTF---------VGAQRTTQVVVTGRMKSNHSEVLREAALDG 234 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291 +GIALLPD++V + L R+ + +TP + Y + + ++ AF +F+ Sbjct: 235 AGIALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVE 294 Query: 292 LKAR 295 AR Sbjct: 295 SLAR 298 >gi|153835148|ref|ZP_01987815.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] gi|148868382|gb|EDL67499.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] Length = 295 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 134/282 (47%), Gaps = 21/282 (7%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW + + V GSF AA +L+ + S+IS++I LE ++G++L R R ++ TE Sbjct: 1 MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + + P+G L+I T+ +G L L +FL YPD Sbjct: 61 AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120 Query: 122 IQIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I++QLI L + ++S+D R + + S S L YAAP YL+ Sbjct: 121 IKLQLITTLPGQIPELSLDL--FISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHGA 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236 P +++EL +HN++ +G+ N + + G+ RIS + ++ Sbjct: 179 PQTVEELSQHNVLIWGE---------NPIREIKTNRGK-RISLSGNFATTNPEALFHGAK 228 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 G GI L + ++K++ LV I+ D+ TVY YP+ Sbjct: 229 RGMGILLSNNVMIKEDLKSGALVPILPDITADEATVYAYYPK 270 >gi|221065606|ref|ZP_03541711.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|264679844|ref|YP_003279753.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|299530586|ref|ZP_07044005.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|220710629|gb|EED65997.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|262210359|gb|ACY34457.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] gi|298721427|gb|EFI62365.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 305 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 139/288 (48%), Gaps = 6/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V +GSFT A++ +Q ++++Q++ +E + ++L R+ RG++LTE G+ Sbjct: 5 DAMHMFVRVVETGSFTKVAQEFATTQPTVTKQVAAMEARLKVRLLNRNTRGVSLTEAGAL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + ++ + G+LRI +++ G+ +L +F+ P +Q+ Sbjct: 65 YYEKCKIIVSDVAEAENVVKVRQTQVQGQLRIGSSVAFGRRVLIPLAMDFMKHNPQVQVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ D+ + D A+RL K + SSL R L A+ YL+ P + Sbjct: 125 LSFEDRYTDLVANGIDVALRLGK-LADSSLGARMLGVNPWVLVASNTYLRKHGTPRRPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H+ + + + + + + P+ P L+ N+ +++ GIA LP Sbjct: 184 LKEHSTLIYSSV--QGNDIWRLRNASGEPVSIPVTGRLRSNNLSALLAAARSHMGIAALP 241 Query: 246 DYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ +D+ R++E + T P ++ YP K+++F F+ Sbjct: 242 RYVAQDSLKDGRVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQSFIAFL 289 >gi|90413364|ref|ZP_01221357.1| putative transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90325606|gb|EAS42075.1| putative transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 360 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 126/283 (44%), Gaps = 27/283 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR +A+ GSF AA L + +++SR++ LE +G +L R +R + LT G Sbjct: 66 DDLRALIAIAQHGSFRAAANALDIPPTTLSRRLQRLEDTLGSQLVIRDSRNVALTPLGRN 125 Query: 66 LHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +LE T EL + SS P G LRI+ + L L +FL LYP++ + Sbjct: 126 YFERCQPLLGELEATTSELMDTSSSNPRGALRISAPVGLLTYQLMPLFNQFLALYPEVTL 185 Query: 125 QLI-LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L N+ D S + D R+ ++P +SS ++ A+P YL P Sbjct: 186 SLNHLSNQHHDYSPEQYDVVFRVGQQP--NSSFAAARIGESQRTLVASPEYLAQYGIPRH 243 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---------RISCLQVNSYLSIMQ 233 EL+ H + + +F W T I R++ +N S+ Q Sbjct: 244 PDELNHHARLA-------TVPEFEWALTCKTDIAHSETIWINSPVRMAIADLN---SVKQ 293 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + G GIA LP+Y+V D L +++D +P +Y Y Sbjct: 294 AAISGLGIACLPNYVVADALEKSTLTTMIDDWYSPPRPIYMLY 336 >gi|330971262|gb|EGH71328.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 305 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL +Q Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPLDLQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H +I + ++A D E +C + VNS + C G G+ Sbjct: 183 ALAQHQVIEYFSTSTGKRYGLEFMA--DGMDVEHASACSIAVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ P + YP + + +++ F +++ Sbjct: 241 VPRYHVAAQLRSGGLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWL 290 >gi|319780112|ref|YP_004139588.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166000|gb|ADV09538.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 306 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 3/187 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF V G+ + A + +S + S +I LE +G++LF R R L TE G+ Sbjct: 5 DNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V + + + S +P G +R+ + LG+ L+ + +F YPDI+++ Sbjct: 65 FYGGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + ++DI + D A RL I+ SSL R ++ AAP YL+ EPL QE Sbjct: 125 LRLSDHNVDIMKEGIDVAFRL-GIIEDSSLRMRGIMECERVLVAAPKYLEARGEPLEPQE 183 Query: 186 L--DKHN 190 L KH+ Sbjct: 184 LIGKKHD 190 >gi|260550578|ref|ZP_05824787.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406289|gb|EEW99772.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 296 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/276 (24%), Positives = 133/276 (48%), Gaps = 8/276 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VAR GSFT AA ++ +SQS++S I GLE +G+ L R R ++ T G Sbjct: 6 NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + S + +++ L +P+G +RI + + +L LK+ YPD+Q Sbjct: 66 ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGDYPDVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +DI + D +R + + R + M A P Y + P + Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMAVIATPAYFEKYGIPQTP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 ++L H I F + + W D + +I + N I++ G G+A Sbjct: 186 KDLVSHQCIGFRLTTQGSV--YAWEFVKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243 Query: 243 LLPDYIVKDN---PNLVRIMED--VITPSFTVYFCY 273 +P+ +++++ L++++E+ + P + +Y+ + Sbjct: 244 YIPEDLIREDLKEGKLIQVLEEYSIQFPGYHLYYPH 279 >gi|238024732|ref|YP_002908964.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237879397|gb|ACR31729.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 31/305 (10%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF AA L +S S++S + LE +G++LF R R + LTE G +L Sbjct: 8 ELTAFVAIAEQRSFRAAARALAVSPSALSHAMRSLEARLGVRLFNRTTRSVALTEAGERL 67 Query: 67 -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 HRV LE+ E+ + +PSG +RI + L++ L +FLL YPDI ++ Sbjct: 68 LHRV-GPALSDLESAVDEVSTAQNRPSGSVRINAPETSARLLIRHVLPDFLLRYPDIHVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D + IDI + D IR + + R + A A+P YL P + Sbjct: 127 FVTDTRLIDIVAEGFDAGIRALDDVPRDMIAVRFGPDMRFIAVASPAYLARHPAPERPAD 186 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYC 235 L +H I G L+ W +D + L VN L++ ++ Sbjct: 187 LMQHRCIRHRFESGALL-------RWDFQLDG-----KTCSLDVNGPLTLGNPNAMIEAA 234 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 + G G+A +P+ +++ + L+ +++ P + YP L+ F + Sbjct: 235 LAGIGVAWVPESQIEEHLASGRLIALLDAWSVPLPGLALYYPANRHPPAPLRLFTQAV-- 292 Query: 293 KARDW 297 RDW Sbjct: 293 --RDW 295 >gi|56709126|ref|YP_165171.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56680811|gb|AAV97476.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3] Length = 314 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 9/182 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S WD R F VAR G+ + AA LH+ +++SR+I +E +G+ LF RH G LTE Sbjct: 21 SLVWDDTRAFLAVARHGTLSAAAGALHIGIATLSRRIDRMEEALGVPLFVRHQSGYQLTE 80 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 GS L E +E I L + + +GK+R+AT + L+ L EF Sbjct: 81 DGSDL----IEKAEAMENAAIALSTGAKLQAQLTGKVRLATAENFASGLIIPALPEFQAR 136 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + ++++ D +++ AD A+R+ KP + + +QR L T+ YA+ Y++ R Sbjct: 137 FPGLMVEIVTDITTVNVHRRDADLALRMVKPQRGNVTLQR-LGTLGYGLYASEAYVQG-R 194 Query: 179 EP 180 P Sbjct: 195 NP 196 >gi|311106187|ref|YP_003979040.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760876|gb|ADP16325.1| bacterial regulatory helix-turn-helix protein, LysR family protein 88 [Achromobacter xylosoxidans A8] Length = 297 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 13/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F +A +GS T AA L S ++SR + LE +VG++L +R R +L+E G Sbjct: 5 EDLEAFIHIAETGSLTKAARNLGRSLQAVSRSLVALEDDVGVQLVHRTTRHSSLSEAGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R ++ ++E+ + PSG LR+ + G + L + E++ YP I++ Sbjct: 65 FFRRVKPAMEEIGEARLEVADRRAAPSGLLRVGAPVLFGPDFLVPVIAEYMREYPQIEVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D++ D +R+ + S L R+L + + AP Y + P E Sbjct: 125 LQLTDAFVDLAAAGLDLVVRIAD-LPDSGLQGRRLGALRRVVFGAPSYFEQHGRPAHPSE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H I + + W +D R +G + N+ +I +G GI Sbjct: 184 LRQHACI----VRTVDQQSGQWAFQIDGKRRNVGVR--GPFRTNTMAAIYSAVSVGLGIG 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + ++ D + I+E+ + ++ + E K++AF +++ Sbjct: 238 YSPLWQIRHLLDTGQVEVILENFESKPVPIHALWQENRLPPAKVRAFVDYL 288 >gi|171056951|ref|YP_001789300.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774396|gb|ACB32535.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 302 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 138/276 (50%), Gaps = 18/276 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F + + SF+ AA + ++Q + ++ ++ +E +G +L +R RG+T TE G+ + Sbjct: 7 VQLFIRIVETASFSKAAAEFGITQPTATKSVAAMEQRLGARLLHRSTRGVTPTEVGALYY 66 Query: 68 RVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ L +S V G LRI+T++ G+ ++ + ++ L+P++ + Sbjct: 67 DKCKLIAREIDAADNLATLLQSQV--GGTLRISTSVAFGRRVVVPLVLRYMRLHPEVTVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L D++ +++ D AIR+ + + S+L R L T AAP YL+ P + + Sbjct: 125 LAFDDRYVNLVEQGVDLAIRMGR-LADSALGARYLGTNPWLMAAAPAYLREHPAPATPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241 L H + + + D W ++ P GE P L+ N+ +++ G G+ Sbjct: 184 LAAHACLVYSSV----QGDERW--SLTTPAGEETSVPVRGPLRSNNLSAVLAAARAGMGL 237 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 A+LP Y+ ++ + + ++ D + P+ V+ +P Sbjct: 238 AVLPWYVARESVADGAITPVLADHLLPAQAVHAVFP 273 >gi|330819736|ref|YP_004348598.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327371731|gb|AEA63086.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 307 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 140/296 (47%), Gaps = 18/296 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F VA SFT AAE L + + S + LE E+G +L +R R + LTE G Sbjct: 5 DALRIFVRVAEMASFTRAAESLGIQKGRASNTVRALEAEIGARLLHRSTRTVQLTEDGHA 64 Query: 66 LHRVTSEVYHKLETTQ-IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ E Q + E V G+LR+ ++ +++L L F+ ++P++ + Sbjct: 65 FYQRAQDLLADAEALQSMFTSEHDVPLRGRLRVDLPSEIARSVLVPALPGFIAMHPELAL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ ++ +D+ + DC +R+ I SL+ R+L ++ M A+P YL P +++ Sbjct: 125 EVSSTDRRVDLIQEGIDCVLRI-GGIVDESLVARRLGSLRMVNAASPEYLARHGVPRNLR 183 Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG-SGI 241 EL H L+ + ++++ RP L VN S+ Y G +GI Sbjct: 184 ELATQGHRLVNYTMSFANRPTVWDYIER-GRPATLALPCALSVN---SVQTYHAAGLAGI 239 Query: 242 AL-------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L L Y+ ++ LV ++ + S V+F + +++AF ++I Sbjct: 240 GLIQASRWRLLSYL--ESGELVEVLPEYRPASLPVWFVVAHRRNLSRRVRAFMDWI 293 >gi|307130795|ref|YP_003882811.1| LysR-family transcriptional regulator [Dickeya dadantii 3937] gi|306528324|gb|ADM98254.1| LysR-family transcriptional regulator [Dickeya dadantii 3937] Length = 302 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 18/299 (6%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +VF + GS T AA+ L +S++ ++R ++ +E +L +R R L+LT +G + R Sbjct: 8 QVFVAITEQGSLTGAAQALEMSRAMVTRYLAEMERWAEARLLHRSTRQLSLTSEGEAVLR 67 Query: 69 VTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E V KLE +E PSG +R+ + L Q L + +L YP + Sbjct: 68 HCRELIAVSQKLEMPSRGRKE----PSGLMRLTCSPSLAQTTLVAAITTYLRRYPKTAVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + D AIR+ + S LI R+L AAP YL P +++ Sbjct: 124 LQVASQTLNLIEERIDLAIRITSQLD-SGLIARRLGGCPSVVCAAPSYLAEHGTPQRVED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HN +T+ K + F + P N L +++ + G+G++L P Sbjct: 183 LAVHNCLTY-SFFGKSLWRFT---RKGEAVAIPVSGSFSANDSLMLLEAALNGAGVSLQP 238 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 Y V D + L+ + +V +Y Y + L+A +F+ F +WK Sbjct: 239 VYSVTDLIASKRLIALFPEVQPQELDIYAVYHSRERMPSALRALVDFLAEWFDSNLEWK 297 >gi|293606820|ref|ZP_06689171.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814824|gb|EFF73954.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 334 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 12/253 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + F VA G+F A ++L + +S++SR + LE ++G +LF R R +LT +G Sbjct: 28 YSGVVAFIAVAVEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRTTSLTAEGR 87 Query: 65 KL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + H + + L+ + EL+E PSG LR+ +T+ G+ ++ L+ F +P Sbjct: 88 QFYEQCHPGVARIVQALDNMR-ELREG--PPSGLLRVCSTVGFGRKVVAPLLQGFCREHP 144 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L LD+ D + + D + R + ++ S +I +K++ + M A+P Y P Sbjct: 145 GIAVELWLDDAPTDFAAERVDVSFRNGR-MEDSQVIAKKIIPMQMLLCASPAYAAAHGLP 203 Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + ++ +H + F + E +F T+ R + P + L N ++Q + G Sbjct: 204 ACVDDIARHRCVNFRLASGRIYEWEFKVAGTL-RKVAPPAM--LSFNDADLVLQAVLDGH 260 Query: 240 GIALLPDYIVKDN 252 G+A + Y V ++ Sbjct: 261 GMAQMAGYQVGEH 273 >gi|326315097|ref|YP_004232769.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371933|gb|ADX44202.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 313 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 8/274 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D++ F VA SFT AAE L + ++S S + LET++G +L +R R + LT+ G Sbjct: 4 FDRMHTFVRVAELASFTQAAEVLGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ ++ Q Q + G++RI + + +N++ L E L +P ++ Sbjct: 64 AYYERCKDLLADVDELQSMFQNADGGGLRGRVRIDMSTGMARNVVVPRLPELLARHPGLE 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L + +D+ + DC +R + +SL+ R L + A+P YL+ P ++ Sbjct: 124 VELSSTERRVDVVREGFDCVLRT-GAVVDASLVARPLGPARLVNCASPAYLRVHGTPQTL 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242 +L H L+ F + + F A VD + P L VN+ + + C+ G GI Sbjct: 183 DDLGDHRLVHFVNTLGARSGGFE--AVVDGTLAAIPMQGALTVNNAEAYIAGCLAGLGII 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +P V D LV ++ P + Y Sbjct: 241 QVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMY 274 >gi|119386211|ref|YP_917266.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376806|gb|ABL71570.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 298 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 129/288 (44%), Gaps = 14/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F + A +F A +L ++ +S++R I+ LE +G++LF R R ++LT G+ Sbjct: 7 LKTFLLAAEKRNFAQVARELDMTPASVTRTIAALEDMLGVQLFVRTTRQVSLTGDGAIFA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + E+ + G+LRI + LGQ +L L F LYP I +++ Sbjct: 67 SRIEQAVEALEAARTEMANAHKADEGRLRINAPMSLGQRVLPQILCGFRDLYPRIDVEIR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D AIR+ I RK+ + AAP E+ Sbjct: 127 LTDRFLDMVEEDFDLAIRISAAPSDKFTIWRKICPVKRLLVAAPGTPH--------AEVK 178 Query: 188 KHNLITFGDLIPKCMEDF--NW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 N ++ GD + + NW L+ + + + N+ + G+G+ LL Sbjct: 179 HPNELSPGDCLAYSADSHRENWQLSDGNASVTIAAGRSISANNGDLLAHMAADGAGVVLL 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P +I+ + LV+I+ D P + YP K ++ AF +F Sbjct: 239 PVFILAQYLRSGRLVQILPDWTPPQIWLTLYYPPYQKLPPRIAAFSDF 286 >gi|150376059|ref|YP_001312655.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030606|gb|ABR62722.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 315 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 16/299 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF GS AA +L S +++SR +S LE VG++L +R R L L+E G + Sbjct: 5 DAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSEAGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V LE + S P G L I+ LG+ +L+ L +FL LYP + + Sbjct: 65 YAAACRRVLTDLEEADMLAGGESSAPRGILTISAPPILGEEILRPMLDDFLDLYPTVSAR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184 L+L ++ +++ + D A+R+ + SSLI +L + A+P YL N Sbjct: 125 LLLLDRFVNLVDEGVDVALRIGH-LADSSLISTRLGGDVRRVVVASPGYLANHPRIEEPA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGS 239 +L KH ++ F + +E +++ + I PR C+ VNS + G Sbjct: 184 DLAKHQILAFTNF---GLESWSFTPAMGSSI--PRTVQFTPRCI-VNSVRAAAASAAAGR 237 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+ L Y V + + L ++ P + P+ + K++AF +F + R Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLAGAEHPPLPAHLLAPQGRMSVPKVRAFVDFAAPRLR 296 >gi|13470517|ref|NP_102086.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14021259|dbj|BAB47872.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 308 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F A SGSF A L +S +++ ++ LE +G +L R R +LT G + Sbjct: 7 MTAFVKAAESGSFAATASALGISPQMVAKHVTYLEARLGARLLNRTTRKQSLTVIGKSYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ E+ KP G LR+ + G + + + +L +P + + L+ Sbjct: 67 DRCKVALAEVDWADAIADEARGKPRGLLRVNAAVSFGAHCVTPVVARYLSSHPSVDVDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ D + R+ P+ S+L +L A +P YLK P + +L Sbjct: 127 LNDRFVDLIDDGFEAVFRI-GPLGESNLGAIELAPFQTIACGSPAYLKERGMPSIVSDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 H + FG+ D WL D + + L+VN+ S+++ + G G+AL+ + Sbjct: 186 NHECLLFGNWPEPTFSD--WLFVRDGLTSKASVHGRLKVNNPASLLEAALAGFGLALIGE 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ + LVR++ + TP ++ + + T KLK F Sbjct: 244 EAVRTHLATGRLVRVLPNYETPPRPIHLLFHPDRRQTPKLKTF 286 >gi|239503585|ref|ZP_04662895.1| LysR family transcriptional regulator [Acinetobacter baumannii AB900] Length = 296 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 134/280 (47%), Gaps = 8/280 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VAR GSFT AA ++ +SQS++S I GLE +G+ L R R ++ T G Sbjct: 6 NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + S + +++ L +P+G +RI + + +L LK+ YPD+Q Sbjct: 66 ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGEYPDVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +DI + D +R + + R + M A Y + P S Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMVVIATQAYFEKYGIPQSP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 ++L H I F + + W D + +I + N I++ G G+A Sbjct: 186 KDLVSHQCIGFRLTTQGSV--YAWEFVKDGQESKIKIQGQWIFNESYDIVEAVRAGFGLA 243 Query: 243 LLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEAL 277 +P+ +++++ NL++++E+ + P + +Y+ + L Sbjct: 244 YIPEDLIREDIKEGNLIQVLEEYSIQFPGYHLYYPHRRQL 283 >gi|16119440|ref|NP_396146.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15161974|gb|AAK90587.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 313 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 4/282 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA +GSF AA+ L+L +SS+S+ + LE+ +G KL R R +T+T +G H Sbjct: 7 IRTFVRVAEAGSFAKAADTLNLPRSSVSKLVQDLESHLGTKLVERTTRSVTMTTEGIAYH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + S P GKLR+ L +L L +F YPDI + L Sbjct: 67 ERALKLLADLDDMDGTVAGSRSAPKGKLRVDIGSVLANQILIPALPDFQHQYPDIDLMLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ D+ + DC IR + SS+ RKL + A+P YL + P +++ Sbjct: 127 VSDRPADLISEGIDCVIR-GGALGDSSMKARKLCELDYVICASPTYLDGLQLPERPDDIE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 K ++++ + +R P + VN + + + G GI + Sbjct: 186 KFRIVSYFSASSGKRFPLRFQRGAERSEYFPTSGGVSVNESTAHLNALLSGLGIGQSFGF 245 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + + LV ++ D + ++ YP +L+AF Sbjct: 246 LARPHFKSGALVELLPDWTPDNHPLHLVYPADRFPNPRLRAF 287 >gi|13473471|ref|NP_105038.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14024220|dbj|BAB50824.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 129/258 (50%), Gaps = 7/258 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V +GSF+ AA L ++ S++S+ I+ LE +G +L R R L LT +G+ Sbjct: 11 EIEVFVRVVEAGSFSAAARTLRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGTAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + E + +LR+ T + G + L L FL Y +I + L Sbjct: 71 YDSGLRILADMAAAEREAAAGAAPRG-RLRVNTYVPFGVHRLIPLLPRFLERYSEISVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L + ID+ + AD AIR P+ S L+ RKL + AAP YL+ +PL+ +L Sbjct: 130 VLTDSVIDLMAERADVAIRA-GPLGESRLVARKLGQSLVVVVAAPSYLEAHGKPLTPADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 D HNL+ FG + + ++ + ++ R + P V+ ++ + G+GI+ L Sbjct: 189 DGHNLMGFGFV--RHIDGWPFVDAEGRAVMVPITGNTLVSDGEAMRLMTLAGAGISRLAR 246 Query: 247 YIVKDN---PNLVRIMED 261 + V + LV ++ED Sbjct: 247 WHVAADIAAGRLVALLED 264 >gi|15597416|ref|NP_250910.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|12230968|sp|Q01610|OPRR_PSEAE RecName: Full=Putative transcriptional regulator gi|9948244|gb|AAG05608.1|AE004648_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 306 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 124/272 (45%), Gaps = 17/272 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR G+FT AA QL ++QS++S+ ISGLE + I+L R R ++ T G +L Sbjct: 12 FVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAI 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E EL KPSG +RI + + LL L LL YPDI+++ ++ Sbjct: 72 GNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDINY 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI D D +RL I + + M AAP Y +P S ++L HN Sbjct: 132 GFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSPRDLVDHN 191 Query: 191 LITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 I G L + W DR + L N+ +I+ + G GIA L Sbjct: 192 CINMRMQSGGGL-------YAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAWL 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 P+ + L+R++E+ P F Y+ Y Sbjct: 245 PEEEFAPHIEEGRLLRVLEN-WCPLFPGYYLY 275 >gi|298487206|ref|ZP_07005255.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158230|gb|EFH99301.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 305 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPLNLP 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H +I + ++A VD+ + + VNS + C G G+ Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMAGGVEVDQALA----CSISVNSADGYVAACEAGFGL 238 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V LV ++ P + YP + + +++ F +++ Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290 >gi|194289522|ref|YP_002005429.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223357|emb|CAQ69362.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 303 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 16/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ ++SR + LE +G++LF R R + LT++G Sbjct: 13 IELFCLAAELGSFTAAAVAAGVTPPAVSRTVQRLEERLGVRLFVRTTRQIRLTDEGRVYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ P+G+LRI+ + L F YP+++I + Sbjct: 73 EQSRGALAQLLDAERQISGQQRAPAGRLRISLPTPYAHYRVLPVLPAFREQYPEVEIDVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D + D D ++R R P S+LI RKL + AAP YL+ P S ++L Sbjct: 133 ISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVAAPGYLRRAGTPQSPEDLL 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241 +H I F P W + GE + SY L G+G+ Sbjct: 192 RHECIQFER--PSSGRRIPWTLRIH---GE-ETDVVTAGSYAVSEDILGGATLVRAGAGL 245 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ++V+ + LV +M D S YP A T +++ F +F+ K Sbjct: 246 FQTYRFVVEQDLRDGALVEVMRDYGGSSRPFVLLYPSARHVTRRVRVFVDFLVEK 300 >gi|157371330|ref|YP_001479319.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323094|gb|ABV42191.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 14/265 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F V + GS A +L S +++R I+ LE G +L R R L TE G + Sbjct: 5 DELAIFVAVIQHGSLAAAGRKLRRSAPAVTRAIASLEQRFGARLVERTTRRLAPTEAGLR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + H+ + ++ ++ + SG LRI + + G+ + + FL LYP +QI+ Sbjct: 65 LAERAHLLLHEYQAAVLDTADTQL--SGLLRITSPVQFGRKHVAPVVMAFLDLYPQMQIE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++++D+ + D A+R+ +Q SS + R+L + A+P YL EPL + Sbjct: 123 MVLNDRNLDLIDEGLDVAVRIGH-LQDSSRVARRLGQVSRVTVASPAYLALRGEPLEPAQ 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+ I F DR PR+ +V + L + G GIA L Sbjct: 182 LVDHDTIVGTQRASLREWRFGPQENGDRVRLTPRLLLNEVETQLLAARA---GKGIARLL 238 Query: 246 DYIVKDN---PNLVRIMEDVITPSF 267 Y V D+ LVR++ P+F Sbjct: 239 SYQVADDLAAGTLVRLL-----PAF 258 >gi|152977901|ref|YP_001343530.1| LysR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150839624|gb|ABR73595.1| transcriptional regulator, LysR family [Actinobacillus succinogenes 130Z] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 146/304 (48%), Gaps = 18/304 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L F+ + GS AA +L ++ ++S + LE +G+ LF R R + LTE G Sbjct: 6 YGYLTYFHEIVNKGSIAAAARKLEIAPPAVSNALKLLERHLGLPLFTRTTRKMELTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T ++ L+ +++ + KP+G +RI T+ L++ + EF YPDI++ Sbjct: 66 RLFDSTKDMIRGLDLMMESVRDLAEKPAGAVRITTSTISYLLLIRPHFAEFCERYPDIRL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +++ +DI + D IR ++ + + ++ L I + YA+ YL +P S+Q Sbjct: 126 EISVNDGIVDIVKEGFDVGIRFGDRLEQNVVAKKLLDPIRLGLYASESYLSKYGKPESLQ 185 Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H L +T P + +V+ P S L N I++ + Sbjct: 186 DLSRHKLLGYRFVTANRTYPLTLNQNGREISVNMP-----YSILTNN---LIVELDAIRQ 237 Query: 240 GIAL--LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIAL L + +V D+ + ++E+ T +Y Y + + G+++ +F+ K+ Sbjct: 238 GIALGRLFEPVVNALHDSEKFIPVLEENWTHYPALYLFYMQHSQKAGRVRVLIDFLLEKS 297 Query: 295 RDWK 298 R K Sbjct: 298 RPNK 301 >gi|107027812|ref|YP_625323.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693478|ref|YP_839011.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105897186|gb|ABF80350.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116651478|gb|ABK12118.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 16/285 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VAR+ SFT AA QL +SQS++S + LE +G +L R++R +T TE G +L Sbjct: 13 LTALIAVARAKSFTRAAVQLGVSQSAVSHAVRALEERLGARLLARNSRTVTPTEVGERLL 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ L + P G +R+ + +L LKEFL YPDI+++L Sbjct: 73 HIVAPRLKEIDAEMSALSDLGGSPRGSIRVTAPDYPSRTILAPKLKEFLPKYPDIKVELS 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +DN+ +D+ + D +RL + I + + + Y P + +L Sbjct: 133 IDNRFVDLVAEQFDAGVRLGEAIAQDMIAVQIGPDVRFTVVGTKRYFATHAVPRTPGDLI 192 Query: 188 KHN-----LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H+ L+ G L + W RP+ L N + V G G+ Sbjct: 193 HHSCVNLRLMAHGGL-------WAWEFEKGGRPVNVRVDGQLACNDIYECLAGAVAGLGL 245 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 A +P+ + + +L+ ++ D Y YP + +G + Sbjct: 246 AYVPEDLAEPYIKAQHLIPVLTDWCPSWGGFYLYYPSRRQPSGAM 290 >gi|218662030|ref|ZP_03517960.1| probable transcriptional regulator protein, LysR family [Rhizobium etli IE4771] Length = 298 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A ++L ++Q+++S QI LE VG LF R R + LTE Sbjct: 7 FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC---RE 179 ++ + ID S + D AIR L +L+ + +P ++ RE Sbjct: 124 AVRFQASSDIIDFSREQIDVAIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIRE 182 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCV 236 P ++L K +L GD+ K + + D RP + ++ ++ +S Sbjct: 183 P---RDLLKFDLFDAGDIWWKQWFEAAGVTETDLDRRPRNQLGSQAVEADAAIS------ 233 Query: 237 LGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+A+L L R+ E + + YPE +N K+KAFRN+I Sbjct: 234 -GHGVAILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNLPKIKAFRNWIL 290 >gi|188535174|ref|YP_001908971.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis Et1/99] gi|188030216|emb|CAO98102.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis Et1/99] Length = 302 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 13/286 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F SGSFT AA +LHL+ S++S+ I+ LE +G +LF R R L LT+ G + Sbjct: 14 FVASVESGSFTAAAGRLHLTSSAVSKSIARLEARLGSRLFERTTRSLVLTDAGQAFYDTC 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + V +L + L P+G+LR+A G+ + L +F +P++Q+ L + Sbjct: 74 ARVLSELAEAESVLAAQRSIPAGRLRVAVPHTFGRLHVMPLLNDFCRQHPEMQLNLSFSD 133 Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D A+R+ + SL R L + + AAP YL P ++ +L++H Sbjct: 134 RFVDLFEEGVDVAVRIGGRGNYPPSLGVRYLGSERLIFCAAPDYLAQHGTPQTLTQLERH 193 Query: 190 NLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 I + G P + + L T R + R++ + S + V G G+A + Sbjct: 194 QAIVYDRIDGSTSPWHVVSPDGLITT-RTVAH-RMALADGEAQRSAV---VAGLGVAQMA 248 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 +++K+ LV ++ P +Y +P + K+ A N Sbjct: 249 TWLIKEPLARGELVTLLPQRAVPGLPLYVVWPRRKQLMPKVDALLN 294 >gi|1050749|emb|CAA61941.1| GSTR protein [Rhizobium leguminosarum] Length = 298 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 131/294 (44%), Gaps = 10/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + V V GS + A+ L +++SR++S LE + +L R R +TLTE G Sbjct: 5 DAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKITLTEAGRS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ ++E + P G+L + I G+ + + +FL YPDI ++ Sbjct: 65 YVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPDINLR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ ++ D+ D A+R+ + S+LI +L I YA+P YLK P + Sbjct: 125 LMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLKRNALPRHPGD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+ +TF + +W T R + P S L VN+ + V G GI + Sbjct: 184 LAAHDCVTFEGM----ASMLSWTFTEGKRDLTVPIRSRLAVNTA-EARRRAVAGLGITRV 238 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y + LV ++ D P V+ YP KL+A +F + R Sbjct: 239 LSYQAAHAESADLLVPLLADFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 292 >gi|68250121|ref|YP_249233.1| putative HTH-type transcriptional regulator [Haemophilus influenzae 86-028NP] gi|68058320|gb|AAX88573.1| putative HTH-type transcriptional regulator [Haemophilus influenzae 86-028NP] Length = 305 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGIM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|70728384|ref|YP_258133.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68342683|gb|AAY90289.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 322 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA QL + +++SR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ T +GQ+ + + + +PD+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D +I L + + S + ++L + A+P Y+K P +L Sbjct: 126 TMANRVPDLLDEGYDVSIVLARELPDSGFVSQRLGMTYSIVCASPAYVKANGCPQKPSDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 H + L+ + W T D P G+ + S VNS ++ + G G+ Sbjct: 186 LNHACL---RLVSPVIPLEKW--TFDGPEGQEMVTINSSPFLVNSADAMKTAIISGMGVG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y + LVR+M + +Y YP K+K + ++ Sbjct: 241 VLPVYAAIEGLRTGTLVRVMPKYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291 >gi|17548049|ref|NP_521451.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430355|emb|CAD17120.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 298 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 30/297 (10%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V +GSFT AA QL +S + + + LET +G +L R R +LT+ Sbjct: 2 DKLRSMETFVAVVDAGSFTEAAMQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V ++ + ++ +PSG LR++ G ++ F +P + Sbjct: 62 GRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLTATFQQAHPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D++ + D A+R+ + + L+ + L M A+P YL P + Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRI-GALGDADLVAKPLCAYRMVISASPDYLARHGRPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIG---EPRISCLQVNSYLSIM 232 +L H +C+ W L+ D +P SC N + Sbjct: 181 PADLPAH----------RCLSHMVWNSRNAWQLSGWDGTTSWRDDPAFSC---NDGHGLR 227 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G+G+ L P+ +V ++ LVR+++ ++ Y + + KL AF Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQTYAPQPRPIHLVYRQDRRPLPKLTAF 284 >gi|170696183|ref|ZP_02887317.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170138911|gb|EDT07105.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 342 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 138/287 (48%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF + + SF+ AA+ L+L ++S+S I LE + ++L R R L+LT G+ + Sbjct: 16 MQVFTRIVDANSFSRAADALNLPRASVSNIIQNLEAHLKVRLLQRTTRRLSLTPDGAAYY 75 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + S P G+LRI LG+ L+ L EF YP +++ L Sbjct: 76 ERCVRILAEVREAESAFSISGHVPRGRLRIDMPGALGRLLVMPELFEFHAKYPALELVLG 135 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + ID+ + DCAIR+ ++ SSL+ R++ + A+P YL + P ++ L Sbjct: 136 FNERRIDLIQEGIDCAIRM-GALEDSSLVARRIGLVPYVTVASPGYLSSHGVPRTVDALQ 194 Query: 188 KHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 KH + F D + + DF+++ + + + VN + + + G GI LP Sbjct: 195 KHTAVKYFIDQSGRAL-DFDFVVGA-QAVQVSMRGTVAVNDAEAYLSCGLKGLGIIQLPF 252 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + L+ ++ D + YP L + ++ F ++I Sbjct: 253 FMARTYLETGKLIEVLPDFKPLPRPISAVYPHKLHLSPNVRMFVDWI 299 >gi|91778246|ref|YP_553454.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690906|gb|ABE34104.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 331 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 131/299 (43%), Gaps = 26/299 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + T + E + +P+G LR+ + +GQ+ + + + LYP++ ++L Sbjct: 66 LTRCQQILADVSTAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRALYPEVTVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ AD A+ + +S L+ L T A+P Y++ P +L Sbjct: 126 TLSQRMPDLFEGSADVAVIGASTLPNSDLVSLPLGTTFSILCASPAYVRAHGAPQKPADL 185 Query: 187 DKHN-LITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H LI P +E N T++ + P + VN S++ G GI Sbjct: 186 AHHECLILHTPAFPPHDWVLEGPNGCETME--VNGP----VHVNIAESLIVAIREGMGIG 239 Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y ++D LVR++ +Y YP R FI K R W Sbjct: 240 MLPLYAAISGLRDG-TLVRVLPQYTAQKMNIYALYPS-----------RKFIDAKTRTW 286 >gi|78062062|ref|YP_371970.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969947|gb|ABB11326.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 297 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 9/249 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +VA GSFT AA +L +SQS++S+ I LET +G++LF R R ++LT GS+L Sbjct: 9 LTAFLLVAEEGSFTRAAARLGISQSALSQVIRALETRLGLQLFARTTRSVSLTAAGSRLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++++ E+ KP+G +R+ Q++LQ + L YPDI+++L Sbjct: 69 ELIGPAMGEIDSGLDEITHLRDKPAGTIRLNADEYAVQHVLQPAVTRLLPAYPDIRVELN 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSIQEL 186 +D DI D +R R + + +I ++ H M AP Y + P ++L Sbjct: 129 IDYGLTDIVSGRYDAGVR-RGGLVAKDMIAVQISPPHPMSVVGAPAYFASRPAPKLPRDL 187 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H I +P E F W+ + E R+ L NS S + G G+A Sbjct: 188 TDHLCINL--RLPTHGEYFPWV--FAKAGKEQRVKVDGQLVGNSIGSARDAALSGLGLAH 243 Query: 244 LPDYIVKDN 252 LP V + Sbjct: 244 LPHAYVAEQ 252 >gi|319793821|ref|YP_004155461.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596284|gb|ADU37350.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 320 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 16/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V SG F+ AA L ++ S+IS+ ++ LE +GI+L +R R L LT +G Sbjct: 11 EMEAFVQVVESGGFSAAARLLDMTPSAISKLVARLELRLGIQLVHRSTRKLQLTPEGLHF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ V ++ + + P G++ I ++ G + L + L ++P+I + + Sbjct: 71 YERSTRVLADMDEAE-RCAAAGAAPRGRVSINASVSFGHHKLVPLVPRLLEMHPEITLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + AD AIR + + +S L+ R+L A+P YLK P + QEL Sbjct: 130 ALTDRIVDLMDERADIAIRWGQ-LPASDLVARRLGETSQAIVASPGYLKKYGTPHTPQEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + HN + + +W VD R + P ++ ++ Q + G+G A L Sbjct: 189 EAHNRLGWS----YRRNTPDWPLRVDGRTVTMPVAGPVRAGDGETLRQLAIAGAGAARLS 244 Query: 246 DYIVK---DNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y ++ D LV ++E+ I P VY L +++A +F+ Sbjct: 245 LYHIQHDIDAGRLVPLLEEFNPGEIEPIHAVYIGKAGTLP--ARVRAVLDFL 294 >gi|167566326|ref|ZP_02359242.1| LysR-family transcriptional regulator [Burkholderia oklahomensis EO147] Length = 306 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVALTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ V + E E + G LR+ +T++ ++ L+EF +P ++++ Sbjct: 65 FYKRCLRVLAEAEEAIDEARGEHGGMRGSLRVTSTVEYALKVVAPALREFTSQHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKN-----CR 178 L D+ D D AIRL + Q L R L T + +P L Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCLDTYDVRPVVSPALLAERGVVRIE 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVL 237 P ++ L + + + D V RP +P++ V S+++ + Sbjct: 185 SPDALACLPQLGHSRLSQVASWLLRDREGREHVFRPAAKPQM----VADNASVLRAFAQQ 240 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP+++V+ DN L+ + D P +VY YP K++A+ +F+ Sbjct: 241 GSGVALLPEWLVRDDLDNGTLIDALPDYRFPPQSVYALYPSTRHVPQKIRAWIDFM 296 >gi|157376667|ref|YP_001475267.1| putative transcription regulator [Shewanella sediminis HAW-EB3] gi|157319041|gb|ABV38139.1| conserved hypothetical transcription regulator [Shewanella sediminis HAW-EB3] Length = 303 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 16/277 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 DK+ F V R+GSF+ AA+Q +S S+ SR I LE +G+ L R R + T+ G + Sbjct: 3 DKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKRSTRKVVPTQAGER 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V +++ E+Q + G +RIA+T +N L + E+L YP + + Sbjct: 63 LFDRFCHVNTEIDDILTEIQNLGNEDRGVIRIASTPLFAKNFLSRIVGEYLREYPYVSFR 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS-----SSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ D+D +D D +IR Q S L++R L+ + A +P Y++ P Sbjct: 123 IVETAYDVD-HIDEVDFSIRANATYQGYLEKDSLLVKRSLLQYPLKACCSPSYIEQFSCP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239 ++L KHN + L+ W+ +D I+ ++V + + G+ Sbjct: 182 EFPEDLKKHNCLYASTLVGGN----KWVFELDGEFTTVDIAQTVEVEDSEFLKTVALTGA 237 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP--SFTVYF 271 GIA LP+ ++KD + LV ++++ F++YF Sbjct: 238 GIAYLPNQLIKDELADGRLVPVLDNYSNSQFEFSLYF 274 >gi|229526471|ref|ZP_04415875.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis VL426] gi|298499753|ref|ZP_07009559.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|229336629|gb|EEO01647.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis VL426] gi|297541734|gb|EFH77785.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 299 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVG 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +HN + + + +F N++ V ++ ++ + + G Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV + + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272 >gi|301168380|emb|CBW27970.1| putative LysR family transcriptional regulator [Bacteriovorax marinus SJ] Length = 306 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 3/288 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L +VA + SF AAE L++S +ISR I+ LE +G+ L R R + LT G+ Sbjct: 6 FDGLIALKLVAENQSFKAAAELLNISTPAISRIIAQLEESMGVTLLTRTTRSVRLTNAGA 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 S ++ Q ++ KPSG LRI T + Q+ L+ +K+FL+ YP+IQ+ Sbjct: 66 IFLEQVSPAMEQILKAQDFIKTYGEKPSGPLRINTPVIFYQHYLKDFIKKFLIKYPEIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ D++ +I D IR I + + I A+P+Y K P+ + Sbjct: 126 EIFSDDQATNIFERGFDAGIRADDIIAKDLIAFKLFGPIDFVTVASPNYFKEFGRPMHPK 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L +HN IT + D + L +N+ +I Q ++G GI Sbjct: 186 DLLEHNCITLRFGSGSGIYDKWEFEEKGKEFNVKIHGNLILNNSENIRQAALIGQGIVYT 245 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 V+++ R ++ S Y YP + + L+AF F Sbjct: 246 EKGCVEEDLKAGRLEIVLNKYKCQSTGFYLYYPHKTQISPALRAFIEF 293 >gi|167565953|ref|ZP_02358869.1| Transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 20/306 (6%) Query: 1 MSFDWDKLRVF--YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 + +W F VVA SF AA L +S S++S + LE + ++LF R R + Sbjct: 3 VGVNWGGPATFRGIVVADQRSFRAAARTLGVSPSALSHAMRNLEARLDVRLFNRTTRSVA 62 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 LTE G + R LE E + +PSG +RI+ + + + L++ L F+ Sbjct: 63 LTEAGEQFLRRVRPAIADLEDAVNEAAAHN-RPSGSIRISASENAARPLIRHVLPGFVAA 121 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YPDI ++ ++D + +DI + D IR+ + + + R + A A+P YL + Sbjct: 122 YPDIHVEFVVDTRLVDIVANGFDAGIRVLEDVPRDMIAIRFGPDMRFAAVASPAYLAHHA 181 Query: 179 EPLSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P + +L +H I F G L +E A++D + P L + + ++ Sbjct: 182 PPQAPHDLMRHRCIRFRFESGTLYRWDLEHRGKTASID--VDGP----LTLGNLNLMVDA 235 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIME--DVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291 + G GIA +P+++ ++ L R++ +PSF + YP L+ F + Sbjct: 236 ALEGIGIAWVPEHLAAEHLALGRLVHLLPEWSPSFPGLCLYYPANRHPPTALRLFAQAV- 294 Query: 292 LKARDW 297 RDW Sbjct: 295 ---RDW 297 >gi|254188559|ref|ZP_04895070.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|157936238|gb|EDO91908.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] Length = 313 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + E ++ +PSGKL++ LGQ+ + + YP++Q+ L Sbjct: 66 LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ + + + S L+ ++L A+ Y++ P Q+L Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H + G + P D W + P GE ++ +VN ++ G GI Sbjct: 186 ASH--VCLGMVAPGLYWD-EW--KLVGPQGEQSVTLAPPPFRVNVAEALAAGIREGMGIG 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y N + VR+M + + +Y Y A R ++ K R W Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|288958304|ref|YP_003448645.1| transcriptional regulator [Azospirillum sp. B510] gi|288910612|dbj|BAI72101.1| transcriptional regulator [Azospirillum sp. B510] Length = 300 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 20/300 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ +RVF VA GSF+ + ++ SS ++ +S LE +G++L R R L LT +G Sbjct: 7 WE-MRVFLRVAAQGSFSATGRDVGMTPSSTAKLVSRLEERLGVRLVERSTRKLRLTVEGD 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L+ E+ + P+G +R+ ++ GQ+ L L EFL +P I + Sbjct: 66 LYRERAAALLGELDALDAEVAGGARAPTGLIRVNASVPFGQHCLLPLLPEFLHAHPGITL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ +D+ D A R P+ S+L+ ++L + A+P YL+ P+S Sbjct: 126 DVTMTDEVVDLYAARVDVAFRA-GPLSDSALLAQRLGVVRRLIVASPAYLERRGVPMSAA 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L+ H+ + F +F A V R + + + N+ ++ +LG Sbjct: 185 DLEAHDCLGF---------NFRRAAAVWPLKSGGRLVDREVPTRILANNGETVRHMALLG 235 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+A L DY V+D+ LV ++ED + + ++ Y + +++AF + + + R Sbjct: 236 LGLARLADYHVRDDLREGRLVAVLEDALVDTEEIHAVYTGRDRAPRRVRAFLDHMAPRMR 295 >gi|239816244|ref|YP_002945154.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239802821|gb|ACS19888.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 316 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 130/269 (48%), Gaps = 19/269 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L V+ + GS+T AA +L +S++++S++I+ LE VG+ L R R + LTE G Sbjct: 10 WMHLHWLIVLGQQGSYTAAAARLGVSKAAMSQRIAELERAVGVTLVRRTTRSMRLTEAGQ 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T E + ++ + ++ Q+ + +P G +R+ + LG+ L L +FLL +P I++ Sbjct: 70 QLVDQTREPFEQIAHSFLQAQDHAGEPRGLVRVTAPVALGRQQLLPRLADFLLAHPSIRV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ ++ + D A+R + + R L A+ YL+ PL+ Sbjct: 130 EMELSDRLSSLATEGFDLAVRHAASPPDTHVAWR-LCDTRSVLVASRAYLRRKGTPLAPP 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---------ISCLQVNSYLSIMQYC 235 L +H+ + + P+ E W + +R G R L N+ ++ Sbjct: 189 MLTEHDCLHY----PRGQETNVW--SFERRGGRARHAERVTVPIAGPLAANNSEALRDAA 242 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMED 261 G GIALLPD+ + LV ++ D Sbjct: 243 QAGLGIALLPDFSAQSGLQAGKLVEVLPD 271 >gi|190893473|ref|YP_001980015.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190698752|gb|ACE92837.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 297 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 145/298 (48%), Gaps = 28/298 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121 R S++ +++ ++E++ + G+LRI+ D+GQ+L+ +F PD Sbjct: 66 FRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFAAENPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-- 179 + +++ D++ +D+ + D AIR+ K ++ S +I RK+ +H A P ++++ E Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCATPDFIEHHPELE 179 Query: 180 -PLSIQELD---KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P I + N T G + ++ + V PI +VNS + ++ Sbjct: 180 HPSDISNVPFIVDTNSRTQGSIRFYNPDNTTFAVAVSGPI--------EVNSPHATLRAA 231 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIAL+PD+I + ++ L+ + D I +Y YP K++ F +++ Sbjct: 232 LAGIGIALIPDFIARKPIESGELLTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289 >gi|91778696|ref|YP_553904.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691356|gb|ABE34554.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 301 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ RVF VA GSF AA L L ++S+S + LE VG++L +R R + LT G++ Sbjct: 5 DQYRVFIQVADMGSFIKAAHALELPRASVSAAVQQLEASVGVRLLHRTTRRVQLTADGAQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +E Q + SG+L++ + + L+ L L +P +++ Sbjct: 65 LRERVRALLTDVEEIDQLFQIRQRQVSGQLKVDMPSRIARRLVVPALPGLLRNHPALRLA 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DCA+R+ + S+L+ + L I M A+P YL+ P + Sbjct: 125 LNSTDRAVDLVQEGVDCAVRV-GTLYDSNLVAQSLGNIAMINCASPGYLREYGVPERPDD 183 Query: 186 -LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 LD H + + P + W R P +S + VN+ + + C G G+ Sbjct: 184 LLDGHLCVGYAS--PTTGRELPWDYLAAGREAQIPVVSRVIVNNAENYISCCCEGIGLIQ 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P + V+ + LV +M + V YP + + +L AF Sbjct: 242 IPRFDVQHLLNAGTLVEVMPEFRAAPMAVSALYPHRRQRSRRLVAF 287 >gi|148974131|ref|ZP_01811664.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] gi|145965828|gb|EDK31076.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] Length = 298 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 137/289 (47%), Gaps = 13/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +A + + + A ++L LS + S IS LE +G++L +R R ++LTE+G Sbjct: 4 EHLKLFVRLASTHNISMAGQELGLSPAVASSHISKLEDNLGVRLVHRTTRKVSLTEEGEA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EV ++ + + S P+G LR+ + G+ L L FL YP +++ Sbjct: 64 FLPHAEEVLSSVDAAKSAVGVGSDSPTGTLRVTASASFGRLHLIPALPGFLERYPGLKVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D+ D AIR+ + ++ S+LI RKL T A+P YL +P + Q+ Sbjct: 124 FRFSDSVVDLVEGGFDIAIRISE-LKDSTLIARKLATDKRVVCASPDYLIKYGKPATPQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L+ H I+ L NW T + P + ++ ++ V G GI + Sbjct: 183 LNGHQCISLIGL-------ENWTFHTENGPKTIKATGSFRADNGEALRDAAVGGLGITVT 235 Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 ++ + + L++++ED +T ++ YP K++AF ++ Sbjct: 236 SNWCAYEQLKSGQLIQVLEDYPLTSEPAIWAVYPSTRLLAPKVRAFIDY 284 >gi|118593258|ref|ZP_01550643.1| Transcriptional Regulator, LysR family protein [Stappia aggregata IAM 12614] gi|118434149|gb|EAV40805.1| Transcriptional Regulator, LysR family protein [Stappia aggregata IAM 12614] Length = 298 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 21/291 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F VA+ GSFT A +L LS +S+ + LE ++ +LF R R ++LT+ G+ Sbjct: 5 ETMRAFVAVAQEGSFTAAGRRLGLSTKLVSKYVQHLEGQLKTQLFNRTTRSVSLTDVGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L+ ++E +G++R+ G L L FL +PD+++ Sbjct: 65 YLEHCRPILEQLDDLDSLVRERQGALAGQIRLTAPTGFGSTRLSEALVPFLRKHPDVELD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L + + + + D AIR+ ++ S+LI RKL + + A+P YLK P + Sbjct: 125 MRLTDHRLALVEEGLDLAIRI-GALRDSTLIARKLAGMPLVLCASPDYLKRHGRPQDPRA 183 Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238 L H C+ D N W R+S ++ NS ++ + G Sbjct: 184 LSTH----------VCLVDSNQTELNIWRFHCGGEEHVVRLSGAVRSNSPGALAHMAMGG 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI + P Y ++D + L R++ D T +F +Y YP T +++A Sbjct: 234 LGITIAPLYAIEDALKDGRLERVLPDYETDTFGLYALYPPNRHLTRRVRAL 284 >gi|304395013|ref|ZP_07376897.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304357266|gb|EFM21629.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 300 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 137/273 (50%), Gaps = 10/273 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA +GSF+ AA Q + QS++S+QI+ LE +G+ L +R R + LTEQG Sbjct: 8 IQTFVRVAEAGSFSAAARQNGMKQSAVSQQIAALEEALGVVLLHRTTRKMALTEQGQHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +E + +L+ + GKL I +G L+ +L F +P +Q+ + Sbjct: 68 QQVRQLLSAMEELEQQLRPGTQPLHGKLHIQLPSGIGHRLMP-HLIAFQQAHPALQLNIA 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ D+ + D AIRL + ++L R L+T+ A+P ++ P + +L Sbjct: 127 LEDRLSDLIAEGVDVAIRLSES-PPATLAARSLITVETILVASPEWIAQNGMPETPDDLQ 185 Query: 188 KHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F + P ++ + + +V P+ S + N+ ++MQ G GI L Sbjct: 186 RHPHIRFSGISPDAPLQLVSGMTSVSVPVK----SVFRSNNSEALMQALEAGLGIGGLQL 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 I D + LVR++ D P +Y +P+A Sbjct: 242 LIGADALASGRLVRVLPDWRLPDRYLYAVFPDA 274 >gi|206562644|ref|YP_002233407.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198038684|emb|CAR54644.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 315 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 126/294 (42%), Gaps = 15/294 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F R SFT AA +LHL+QS+ISRQI LE +G LF R R L LT G + Sbjct: 24 LIAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 82 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQ 125 + H+L E +KP G L + G L L L +F YP+I+++ Sbjct: 83 ---AAQVHRLLVQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPDFRATYPNIKLR 139 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI+ + +S D + + + R+L + AP YL L + Sbjct: 140 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 197 Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L L+ D + M W L VDR +P+ + +NSY I+Q +LG G++L Sbjct: 198 LANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 255 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 Y++ + LVR+ E + Y P + F ++F +A Sbjct: 256 GWRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQA 309 >gi|289624357|ref|ZP_06457311.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649651|ref|ZP_06480994.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330868659|gb|EGH03368.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 303 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 33/301 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF VAR SF AA +L +S + +S+++ LE +G+ L +R R +++TE G + Sbjct: 7 DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSITEDGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ E+ +PSG LR+ ++ G+ + L E LYP + I+ Sbjct: 67 VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + L R L + A+P YLK+ PLSI E Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGAPLSIGE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPR-ISCLQVNSYLS------IMQ 233 L H+ + + DRP G P+ ++V LS Q Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGPQGAETVKVTGSLSSNHGEIARQ 231 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289 +C+ G G+ L + V+ + R+++ + P + ++ + L ++ K++ F Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLIQ--VLPDYRQDADIWAVHTSPLMSSAKVRVTVEF 289 Query: 290 I 290 + Sbjct: 290 L 290 >gi|238764597|ref|ZP_04625543.1| HTH-type transcriptional activator aaeR [Yersinia kristensenii ATCC 33638] gi|238697187|gb|EEP89958.1| HTH-type transcriptional activator aaeR [Yersinia kristensenii ATCC 33638] Length = 297 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 30/251 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LETE+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVECGSFTGAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ +L + P+G LRI + + QN+L E L YP + + L+ Sbjct: 61 QGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLTEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 121 TGIPAPDLITDGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLSQHGTPEK----- 174 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQY 234 P M F+WL RP + P Q+ N +++++ Sbjct: 175 -----------PSDMTHFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIRW 223 Query: 235 CVLGSGIALLP 245 G+GIA P Sbjct: 224 LKAGAGIAYAP 234 >gi|261339915|ref|ZP_05967773.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] gi|288317826|gb|EFC56764.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] Length = 296 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 10/283 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VVAR SFT AA QL +SQS++S + LE + ++L R R + TE G Sbjct: 5 NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLEARLEVRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L S ++E L+++ +P+G +R+ +L LK F+ YPDI Sbjct: 65 ERLLMRLSPHLLEIEQELTALRDTRDRPAGNIRLTAGEHAMSAVLWPVLKPFMAQYPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI D +RL + + + R + M + +Y + P + Sbjct: 125 VEVTVDNGLTDIVDGRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSANYFERYGTPDTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 ++L H I +P + W +R E R+ L +N+ + G G Sbjct: 185 EQLQHHRCINM--RLPTRGGLYAW--EFERDGRELRVRVDGQLTLNNLPQRIDAAESGLG 240 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 +A +P+ V+ D L+R++E P + YP ++T Sbjct: 241 LAYVPEDTVREALDQGRLLRVLEAWCPPFDGYHLYYPSRRQHT 283 >gi|149923928|ref|ZP_01912315.1| transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] gi|149815216|gb|EDM74764.1| transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] Length = 314 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 17/291 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D+ R+F + +GS AA QL SS+SR+++ LET +G +L R RG TE G Sbjct: 7 DSDE-RLFLRIVEAGSLKAAAAQLGSDPSSVSRRLAALETRLGQQLVRRSTRGSKPTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + +++ + + + + +P G+L + + G + L++ YP + Sbjct: 66 ARYYEGLAQLVAQQDALEAAVAGGRDEPQGRLHVTAPPEFGVRFVVPVLEQLQRRYPALV 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L +++ D A+R+ K + SSL RKL + A+P YL P S+ Sbjct: 126 VELALGTAFTNLAERGLDAAVRIGK-LSDSSLRARKLGVVPRLLVASPAYLDAAGTPRSL 184 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238 EL +H +I++ G + L V+ RP+ VNS ++++ G Sbjct: 185 AELPEHRVISYLTRSGVNRVRARTPRGDLREVEVRPV-------FTVNSISTLVRMVEGG 237 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +GI L P + D +V + ED ++ V YP K +AF Sbjct: 238 AGINLAPRWAFADALAAGRVVALFEDHRFEAYPVQIVYPSRRYLPAKTRAF 288 >gi|325527537|gb|EGD04859.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 297 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 3/239 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SFT AA +L +SQS++S I LET +G++L R R ++ TE G +L Sbjct: 9 LLAFIAVARERSFTRAAARLGVSQSALSYTIRALETRLGVRLLTRTTRSVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + + ++E + E KP+G +RI T + + LL L L YPD++++ + Sbjct: 69 RNLAPRFDEIEAELSAVAELRDKPAGTVRINATDYVIRTLLWPKLSPMLRDYPDLKVEFV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D DI + D +RL + + R + M AP Y P+ ++L Sbjct: 129 TDYGLSDIVAERFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAQRARPVVPRDLV 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H+ I +P + W D + R+ + N ++ + G G+A +P Sbjct: 189 AHDCINL--RLPTHGALYAWELAKDGETLQVRVDGQVTFNGTYEMLDAALDGYGLAYVP 245 >gi|170744847|ref|YP_001773502.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168199121|gb|ACA21068.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 308 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A +G F AA +L LS S++ + ++ LE + ++LF+R R LTLT +G+ Sbjct: 7 LNAFVQTAEAGGFAPAAARLGLSASAVGKAVARLEDRLAVRLFHRSTRSLTLTPEGAMFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++E +IEL + PSG LR+ ++ L L+ + F+ YP+I + L Sbjct: 67 DRCRRIFSEIEAAEIELSRTRRAPSGTLRV--SLPLIGMLMMPAVMAFMRAYPEITLDLD 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D IR + + S L+ R+L A+P YL P + ++L Sbjct: 125 FTDRLVDVIEEGFDAVIRTGE-ARDSRLMMRRLGAFSHRIVASPDYLAARGTPRAPEDLL 183 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM--QYCVL--GSGIAL 243 H + P + W D G L V + S + Q C+ G G+A Sbjct: 184 AHACLH--HRYPTTGKLQRWPLVRD---GADLDLALPVTAVASTLEPQLCLAEEGFGLAC 238 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + V+ LV ++ D + + +P + + KL AF F+ Sbjct: 239 LPLFAVQRFLRRGALVAVLRDHLREVGAFHILWPASRHPSPKLAAFVAFM 288 >gi|28198337|ref|NP_778651.1| transcriptional regulator [Xylella fastidiosa Temecula1] gi|182680977|ref|YP_001829137.1| LysR family transcriptional regulator [Xylella fastidiosa M23] gi|28056407|gb|AAO28300.1| transcriptional regulator [Xylella fastidiosa Temecula1] gi|182631087|gb|ACB91863.1| transcriptional regulator, LysR family [Xylella fastidiosa M23] gi|307579444|gb|ADN63413.1| LysR family transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 301 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 13/279 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +++F V +G F A ++L L++S+I + I+ LE +G++LF R R +LTE G Sbjct: 5 FDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLTEDGQ 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L + L++ + +G+L ++ + G+ + L+ + +P +++ Sbjct: 65 QYYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRQCVAPILRTYAREHPQLEL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + +D+ D D A+R ++L R+L A+P YL +P ++ Sbjct: 125 ELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKPHTLA 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 +L H+L+T+ C D N T+ G P S L+ N I V G G Sbjct: 185 DLADHDLLTY------CRNDRNMAWTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 +A LP +++ + L+ I D + + +P A Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVIECHVVWPAA 277 >gi|298717595|ref|YP_003730237.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361784|gb|ADI78565.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea vagans C9-1] Length = 294 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 81/301 (26%), Positives = 143/301 (47%), Gaps = 16/301 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + L VF +VA++ +F AAEQL +++ +IS+ + LE + I L R R + LT Sbjct: 1 MNADKNALEVFVIVAQTRNFRLAAEQLGVTRPAISQSLRRLEDRLNISLMQRTTRSVQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119 E G +L+ + ++L ++ E + +P G+LR+A + + + +L G L F+ Y Sbjct: 61 EAGQRLYAEVAPAINQLNRAVTDIAELAAEPRGQLRLAIS-SIAERMLGGELLASFITAY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCR 178 P +++ + + +++ DI D +RL + I + ++I + T A A+P YL Sbjct: 120 PQVELDITVTDEEFDIVGQGYDAGVRLGEVI-AQNMIAVPVSTAQRQVAVASPSYLARAG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +EL H I G + + W A R L N ++ Sbjct: 179 TPQHPEELVTHRCI--GWRKGPGLAPYRWEFAEQGREFDVAVNPQLTTNDMGVMIHTACA 236 Query: 238 GSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG-KLKAFRNFIF 291 G GI+ YI D LV ++++ + PSF ++ Y + KN KL+A + + Sbjct: 237 GGGISFGMQETFQPYI--DRGELVTVLDEWL-PSFAGFYLYFPSRKNLAPKLRALIDHVR 293 Query: 292 L 292 L Sbjct: 294 L 294 >gi|222033251|emb|CAP75991.1| LysR-family transcriptional regulatory [Escherichia coli LF82] gi|312946088|gb|ADR26915.1| putative transcriptional regulator, lysR family protein [Escherichia coli O83:H1 str. NRG 857C] Length = 242 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 2/204 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PSG +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M +P Y P + Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW 207 +L H I +P ++W Sbjct: 185 HKLQNHRCINM--RLPTAGGLYHW 206 >gi|169796303|ref|YP_001714096.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213156961|ref|YP_002319006.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|215483762|ref|YP_002325987.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|301347605|ref|ZP_07228346.1| LysR substrate binding domain protein [Acinetobacter baumannii AB056] gi|301512809|ref|ZP_07238046.1| LysR substrate binding domain protein [Acinetobacter baumannii AB058] gi|301596934|ref|ZP_07241942.1| LysR substrate binding domain protein [Acinetobacter baumannii AB059] gi|332851615|ref|ZP_08433564.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332866504|ref|ZP_08437046.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169149230|emb|CAM87112.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213056121|gb|ACJ41023.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213987410|gb|ACJ57709.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|332729843|gb|EGJ61177.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332734583|gb|EGJ65692.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 311 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + L+ RKL+ I A P YL P + Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPHD 189 Query: 186 LDKHNLITFGD 196 L +H I G+ Sbjct: 190 LKQHECIYLGE 200 >gi|206559334|ref|YP_002230095.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035372|emb|CAR51248.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 295 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 129/249 (51%), Gaps = 11/249 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SF AA +L++S SS +R + +E +G +L R R L+LT+ G H Sbjct: 7 MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAG---H 63 Query: 68 RVTSEVYHKL-ETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +++ H + E ++E +S+ +P G L+IA + G ++L + F + +P I Sbjct: 64 LYLAQIRHVIDEIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVP 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + D + L + I +++L++R L + AAPHY+ P Sbjct: 124 EVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLKQIVCAAPHYVDRHGAPAHPH 183 Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H ++F D + + + F+ T R P S N L I + + G GIA+ Sbjct: 184 DLASHACLSFHADFMGEYLS-FDHDQT--RITVRPNKSASSNNVGL-IRNWALSGMGIAV 239 Query: 244 LPDYIVKDN 252 LPD++V+ N Sbjct: 240 LPDFLVQSN 248 >gi|190890986|ref|YP_001977528.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190696265|gb|ACE90350.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 297 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 9/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + V V GS + A+ L +++SR+IS LE + KL R R +TLTE G Sbjct: 5 DAMSVLLAVVEHGSLSAASRHLRSPLATVSRKISELEAHLHAKLLQRSNRKITLTEAGRS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ ++E Q P G+L + I G+ + + +FL YP+I ++ Sbjct: 65 YVEAAREILDRVEEAQRTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPEINLR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ ++ D+ D A+R+ + S+LI +L I YA+P YL P + Sbjct: 125 LMLGDRLSNLVEDHIDLALRIGT-LVDSNLIATRLGAIRRTVYASPDYLARNAPPRQPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+ ITF ++ +W + R + P S L VN+ + + V G GI + Sbjct: 184 LSAHDCITFENM----ASIRSWTFSDGKRDLAVPIRSRLAVNTAEAAVDAAVAGLGITRV 239 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y L ++ D P V+ YP KL+A +F + R Sbjct: 240 LSYQAARAETAGLLAPLLSDFEPPPAPVHLVYPSQGLVPLKLRALLDFATPRLR 293 >gi|209546207|ref|YP_002278097.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539064|gb|ACI58997.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/301 (23%), Positives = 135/301 (44%), Gaps = 12/301 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD L+ F VAR+G + AA QL S +++SR+I LE + +KLF R+ RG LT Sbjct: 7 FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ + + E + +L + S+ G +R++ L F +P + Sbjct: 67 GTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPRFAAQHPHL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + + +S AD ++ L +P + +L H+ Y + YL Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAERLTDYHLQIYGSRDYLAKAPVITC 185 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 +L +H +++ ++I ++L+ V PRI Q +S + + G G Sbjct: 186 RDDLLEHPFVSYIEEMI--FAPGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298 + +LP + P LVR++ I + LK +++A +F+ ++ D + Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298 Query: 299 F 299 F Sbjct: 299 F 299 >gi|121594671|ref|YP_986567.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120606751|gb|ABM42491.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 288 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 18/295 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + LR F AR + T AAE+LH++Q+++S+ I LE VG LF R RGL LT Sbjct: 1 MHLPLNALRAFEAAARHLNLTRAAEELHVTQTAVSQHIRNLEERVGKPLFRRLPRGLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G +L V S+ + ++ L ++ +P L + L L+ F +P Sbjct: 61 DEGRQLVPVLSDSFARIGQALQRLADT--RPREVLTVGVVGTFAVGWLLPRLRAFHESHP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L+ N +D++ + DCAIR + +R L+ + AP REP Sbjct: 119 FVDLRLLTHNNRVDLAGEGLDCAIRFGDGAWHGTDAER-LMPAPLAPLCAPEVAARLREP 177 Query: 181 LSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L L+ D P W P P + +S L++ + G Sbjct: 178 ---ADLGAEALLRSYRADEWPA------WFTAAGAPC--PVLRGAVFDSSLTLAEAAAQG 226 Query: 239 SGIALLPDYIVKDNPNLVRIMED-VITPSFTVYF-CYPEALKNTGKLKAFRNFIF 291 +G+ALLP + + R+++ T + Y+ C ++ T L+AFR+++ Sbjct: 227 AGVALLPVRMFERELRQGRLVQPFACTAALGDYWLCRLKSRAPTDALQAFRDWLL 281 >gi|325521619|gb|EGD00398.1| LysR family regulatory protein [Burkholderia sp. TJI49] Length = 313 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 136/298 (45%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + AAP Y++ P +L Sbjct: 126 TLAQRLPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCAAPSYIEQHGVPQRPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H I G + P D LA + PI P +VN ++ G G A Sbjct: 186 AQH--ICLGMVTPGFQYDEWILAGPNGDEVVPIEAP---PFRVNVAEALAVAVREGMGRA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y + ++VR+M + + +Y Y A R ++ K R W Sbjct: 241 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|226953053|ref|ZP_03823517.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226836203|gb|EEH68586.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 295 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 138/310 (44%), Gaps = 55/310 (17%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++VF AR GSF AA +L++S ++IS QIS LE E+GIKLF R R +TLT++G K Sbjct: 9 NSIKVFEATARLGSFKAAAYELNVSPTAISHQISELEKELGIKLFIRGFRIVTLTDEGKK 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V+ + +L+ T +EL S + I+TT L L F YPDI++Q Sbjct: 69 LAEVSIRLISELKQTLLEL----TTYSKHITISTTNAFAAMWLVPQLHVFKTQYPDIEVQ 124 Query: 126 LILDNKDIDISMDYA-DCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D++ IDI D D AIR +K IQ S +I + Y +N Sbjct: 125 VKADDRLIDIDHDLKFDMAIRYGFVDKKHIQVSKIINDQFGLFATQQYWRDREEENSDVK 184 Query: 181 LSIQELDKHNLIT----------FGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSY 228 L + + NL+ FG + P ED N Sbjct: 185 LLVTQWKNENLLKHDQSDILLQRFGQVCPTVEYFEDEN---------------------- 222 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY----FCY----PEALKNT 280 ++Q + G G+A + +V+ ++E +PSF + CY P+ N Sbjct: 223 -QVIQAALAGQGVAYVSKILVQQTVTQGWLLE---SPSFQIEGMDNLCYYSVIPKRNLNH 278 Query: 281 GKLKAFRNFI 290 + AF+N++ Sbjct: 279 PSVIAFQNWV 288 >gi|319780180|ref|YP_004139656.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166068|gb|ADV09606.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 296 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 138/296 (46%), Gaps = 25/296 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-- 64 +L V VA+ GSF AA +L ++ S++S +S LE +G++L R R + TE+G+ Sbjct: 8 QLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGAQL 67 Query: 65 --KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +L SE+ LET IE ++ +P+G LR+ L L F YPDI Sbjct: 68 LERLRPALSEIDLALETA-IETRD---RPAGNLRLTVPRTAAHLALTPRLGAFASAYPDI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++++++ D+ D +RL + +Q + R + AP Y + +P Sbjct: 124 VLEIVIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDLRGAVVGAPVYFEVNPKPRH 183 Query: 183 IQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 ++L H I F G L + W R E + L ++ I Q V Sbjct: 184 PRDLADHRCIRFRFSSGIL-------YRWEFERGREAIEMAVEGPLILDEDHLIAQAAVD 236 Query: 238 GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNF 289 G+G+A + DY+ + L+R++ED PSF +F YP + L+AF +F Sbjct: 237 GAGLAFVFEDYVRAPLADGRLIRVLED-WCPSFDGFFVYYPSRRQMRPALRAFVDF 291 >gi|34496036|ref|NP_900251.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34101890|gb|AAQ58257.1| transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472] Length = 297 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 22/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F + +GS + AA+++ + ++++R++ LE E+G KL R AR L T +G + Sbjct: 3 DDLDLFVAIVDAGSLSAAAKRMAMPAATLTRRLQALEAELGCKLLNRSARRLVPTNEGWQ 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + L L + + G +R + + +LL + L +P ++++ Sbjct: 63 YYEQCKPLLAALRQAADSLDATLNRVEGVVRAMAPVSMANSLLLPVWQRLLQRHPAVRLE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L N D+ D AIR+ P S L QRKL + AAP YL+ P + ++ Sbjct: 123 LVLSNGTEDVWAMGGDLAIRV-GPQPDSQLNQRKLGQVSAVLAAAPSYLEARGRPQAFEQ 181 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGS 239 L H+L+ L NW L VD G+ P + L VN L ++ G Sbjct: 182 LAGHDLLLTTPL-------QNWKLHRVD---GDEERSLPDGARLLVNDMLLGVRMAEAGC 231 Query: 240 GIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+ L P + D L RI++D P VY +P+ +++A + + Sbjct: 232 GVVLCPLSQCHRELADG-RLERILQDWWIPPRPVYAVWPQRRAMPARVRALLDILL 286 >gi|53722664|ref|YP_111649.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|77358738|ref|YP_338511.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|134278607|ref|ZP_01765321.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167724403|ref|ZP_02407639.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167743364|ref|ZP_02416138.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167820547|ref|ZP_02452227.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167898973|ref|ZP_02486374.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167907306|ref|ZP_02494511.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|217422239|ref|ZP_03453742.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|254359194|ref|ZP_04975466.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52213078|emb|CAH39117.1| LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|66967536|gb|AAY59093.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|134250391|gb|EBA50471.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|148028381|gb|EDK86341.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|217394470|gb|EEC34489.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 306 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF+ +P ++++ Sbjct: 65 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P + + + Q G Sbjct: 185 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 241 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 G+ALLP+++V+D+ +++ + F VY YP A K++A+ +FI Sbjct: 242 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 296 >gi|222149939|ref|YP_002550896.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221736921|gb|ACM37884.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 297 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 5/199 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR SFT AA L +S S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLLAFAAVARERSFTRAAASLGISPSALSHAMRGLEERLGVRLLARTTRSVAPTEAGDR 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + +E L E PSG +RI T + +L L FLL +P+IQ++ Sbjct: 67 LLQSIRPAFASIEDGLSALAEWRDSPSGSVRITTFSYPAKTVLMAKLPAFLLSHPEIQVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D++ DI + D IR + + + R + A P Y ++ +P + + Sbjct: 127 VNIDDRLTDIVAEGYDAGIRFGENVAKDMIAVRVGPDLRTIVVATPCYFEHHPKPKTPGD 186 Query: 186 LDKHNLITF-----GDLIP 199 L+ HN I + G L+P Sbjct: 187 LEVHNCIGYRLASAGGLLP 205 >gi|332284460|ref|YP_004416371.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330428413|gb|AEC19747.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 306 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 16/294 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V+A S AA L ++ ++S++++ +E +G+ L R R + LT +G Sbjct: 9 ELAFFSVLASSSGLGAAARSLGVTTPAVSKRLAQMEARLGVALVIRTTRRMRLTPEGEIY 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + L S P G LR+ + G++ + + F+L +PD+Q+QL Sbjct: 69 LDHARRILAEIDEMEQLLVGSESAPKGMLRVNASPGFGRSYIAPLISRFMLKHPDMQVQL 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L S D D IR P +I R+L + AAP YL P + ++L Sbjct: 129 QLSVDPPAYSSDAFDVCIRFGGP-PDGRIIARRLASNRRMLCAAPAYLARHGAPAAPKDL 187 Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239 ++H I+ I + E + W T +R G + L+V LS + + + G Sbjct: 188 ERHQCIS----IEQGGEAYGVWRLTTERD-GSRKTEVLRVQGPLSTNDGEAAVSWALDGH 242 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + ++ + + LV+++ D TP +Y Y + K + +++ F +F+ Sbjct: 243 GILMRAEWDIARYLSSGRLVQVLPDYQTPDADIYATYLQKHKLSARVRVFVDFV 296 >gi|323499888|ref|ZP_08104847.1| LysR family substrate binding transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315129|gb|EGA68181.1| LysR family substrate binding transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 303 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 18/293 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++ +F VA SF+ AA++L +S+S +S QI LE E+ L R R + LT G Sbjct: 8 FERYALFSEVANQLSFSKAADKLGISRSYLSSQIHQLEQELETSLLIRSTRSVRLTSAGE 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 K+ + + + EL+ + + +G LRI L +EF ++P I+ Sbjct: 68 KILLKMQAINSSILQLEKELEHTESEVTGMLRITAPTIFSHRFLIDICREFQDIHPQIEF 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + D++ D AIR +++ +KL+ A+P YL EP Sbjct: 128 DLNVGYTREDLTKTNFDLAIRATTN-PPENMVAKKLMPYQHICCASPQYLARYGEPTHPD 186 Query: 185 ELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 +L +HN C+ D W D + + +N L +++ + G G Sbjct: 187 QLVQHN----------CLSDPHLTEWAFFSDNTTIRVKTDGDMFINDNLLLLEAAIQGKG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +PDY+V+ D+ LV+I+ ++Y YP L+ + KL AF F+ Sbjct: 237 IIKMPDYLVRQALDSGALVQILPRYFINQSSIYLIYPPQLRGSTKLAAFTEFM 289 >gi|254787258|ref|YP_003074687.1| LysR family transcriptional regulator [Teredinibacter turnerae T7901] gi|237684897|gb|ACR12161.1| transcriptional regulator, LysR family [Teredinibacter turnerae T7901] Length = 296 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 141/288 (48%), Gaps = 12/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R V GSFT AAE+L +S +S+ + LE ++G +L R R L +TE G++ Sbjct: 5 ETMRALVAVVHEGSFTKAAERLQMSPQLVSKYVGKLEEQLGARLLQRTTRSLHVTEAGAR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L +L + G+LRI+ + + + +F +P++ + Sbjct: 65 YAQRAELLLDELADMDQQLGNFQQEAKGELRISAPVSFAAKHMGPLISDFRQTHPEVTVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +DI + D A+R+ + ++ SSLI + + I + A+P YL+ P ++ Sbjct: 125 LKLNDRKVDIVDEGFDIALRIGR-LRDSSLIAKPIAPIKLVLCASPAYLEKQGTPAYPKD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+ + + L + + +++ + R S + N L + Q + G+GIAL P Sbjct: 184 LADHHFLRYSYLDAQAI-------PLNQHLQRARHSLVCNNGDL-LTQAAIAGAGIALQP 235 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I D LV ++ + P FT+Y Y K++AF +FI Sbjct: 236 TFIAGDAIKRGELVALLTEHTPPPFTLYAVYSHRTHLASKVRAFIDFI 283 >gi|194289221|ref|YP_002005128.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223056|emb|CAQ69061.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 307 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 131/300 (43%), Gaps = 25/300 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F AR SFT AA +LH++Q ++S+Q+ LE +G++LF R + L LT G + Sbjct: 10 ELHAFEAAARHNSFTVAARELHVTQGAVSKQVRSLEAYLGVELFQRVRQRLVLTPAGERY 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++LE +EL + G L IA+ LG L L +F +P++ ++ Sbjct: 70 LERIAPSLNELEAATVELMAGQGR-GGVLHIASMPTLGAKWLIPRLPQFFARHPEVTLEF 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + D S D AIR + SL +M L CR L E Sbjct: 129 VPHAQGYDFSEPDLDAAIRFGDGVWPGSLAD------YMTGR---EVLPVCRPGLLASEP 179 Query: 187 D-----KHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 D L+ + L +P+ D W AT+ P + S + + + + Q + Sbjct: 180 DGVAPTPAALLRYPLLHHTTVPEAWPD--WFATLGLPTRD-AWSGARFDQFSLLTQAALS 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G GIAL+P ++++ LV + Y CYPE ++ L+ FR ++ A Sbjct: 237 GLGIALIPRCLIEEELATGALVVAHPAQVLAKKGYYLCYPEQKQHLPALRTFRAWVMEGA 296 >gi|71736118|ref|YP_274829.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556671|gb|AAZ35882.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 305 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFAKAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPLNLP 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H +I + ++A VD+ + + VNS + C G G+ Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMADGVEVDQALA----CSISVNSADGYVAACEAGFGL 238 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V LV ++ P + YP + + +++ F +++ Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290 >gi|304396408|ref|ZP_07378289.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304355917|gb|EFM20283.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 302 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 27/297 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF VA SGSF AA +L +S +++ I+ LE +G L +R R +LT+ G Sbjct: 7 MNVFVTVAESGSFAAAAGKLLISPQMVAKHIATLEKHLGTLLLHRTTRRQSLTDVGRNY- 65 Query: 68 RVTSEVYHKLETTQIELQESSV-------KPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 Y + + E+QE+ +PSG L+++ + G L + +L +P Sbjct: 66 ------YERCKIVLAEVQEADAIALDMQQRPSGTLKVSAPVTFGSFSLAPFVTRYLDRFP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D Q+ L L ++ +D + + IR+ + SS+I L + A A+P YL P Sbjct: 120 DTQVDLELSDRLVDPFEEGYEVVIRIGA-LPDSSIIAHPLKPYELIACASPAYLARHGFP 178 Query: 181 LSIQELDKHNLITFGDLIPK--CMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCV 236 + +L+ H + +G P C F V+ P G ++ N + +++ + Sbjct: 179 ATPADLENHACLVYGIWSPSKPCRWVFTQAGKVEEVHPQGR-----MRSNDWKALLHAAL 233 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI L P I+ + LV+++ D P+ ++ P + T K+++F I Sbjct: 234 EGYGITLGPASILSEEIRQGRLVQVLPDYAGPARPMHVLIPAGRRQTVKIRSFVKAI 290 >gi|260769894|ref|ZP_05878827.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] gi|260615232|gb|EEX40418.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972] Length = 299 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 8/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AEQ +L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRMARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG +R++ G +L + EF L+P + ++ Sbjct: 64 LLASAKNVKQATQEAMDAVAGFGENVSGHIRMSVPSISGDLILADAVAEFCNLHPGLTVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +P+ ++ Sbjct: 124 MSLDNRFVDLVEGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIKPED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L HN + + + +W + R+S ++ ++ + + G GIA + Sbjct: 183 LVNHNCLQYA---YQTTGATDWEFKSAKGNYIVRVSGTFTTDNATALRKAALGGHGIAYV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 P +V N LV I + + +Y YP Sbjct: 240 PRCLVYHDFRNGELVDIFPEQVGKKLGIYAVYP 272 >gi|260555370|ref|ZP_05827591.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260411912|gb|EEX05209.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 311 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLGRYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + L+ RKL+ I A P YL P + Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLSKHGTPNHPHD 189 Query: 186 LDKHNLITFGD 196 L +H I G+ Sbjct: 190 LKQHECIYLGE 200 >gi|221068165|ref|ZP_03544270.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220713188|gb|EED68556.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 303 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 2/186 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V GSF+ AA ++ S++S+ ++ LE +G +L R R L LT +G Sbjct: 11 ELEVFARVIEWGSFSAAARACGMTPSAVSKLVARLEQRLGTRLVNRSTRQLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L+ + + P G+LR+ + G + L + +FL +PD+ + + Sbjct: 71 YERGVRILADLDEAE-RCASTHTAPRGRLRVNANVPFGHHFLLPWVPQFLARHPDVTLDI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L + IDI D A+R P++SS+L+ RKL M AP YL P + QEL Sbjct: 130 VLTDAVIDILEQRTDVAVRA-GPLKSSNLVARKLGATRMVIVGAPSYLARHGTPTTPQEL 188 Query: 187 DKHNLI 192 HN + Sbjct: 189 LAHNCL 194 >gi|206580446|ref|YP_002236343.1| transcriptional activator AaeR [Klebsiella pneumoniae 342] gi|288933330|ref|YP_003437389.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|290511620|ref|ZP_06550989.1| DNA-binding transcriptional regulator [Klebsiella sp. 1_1_55] gi|206569504|gb|ACI11280.1| transcriptional activator AaeR [Klebsiella pneumoniae 342] gi|288888059|gb|ADC56377.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] gi|289776613|gb|EFD84612.1| DNA-binding transcriptional regulator [Klebsiella sp. 1_1_55] Length = 309 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 130/289 (44%), Gaps = 11/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R L LTE G Sbjct: 6 RMSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + +L + P G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAEMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L ++ M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ + + E R I + R N ++++++ G GIA +P Sbjct: 185 ASHSWLEYSVRPDNEFEIIAPEGISTRLIPQGRFV---TNDPMTLIRWLTAGVGIAYVPL 241 Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 + N R +++ PS+ VY Y E K K++ N++ Sbjct: 242 MWAIEEIN--RGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCINYL 288 >gi|197295346|ref|YP_002153887.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|195944825|emb|CAR57431.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 318 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 10/231 (4%) Query: 17 SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76 +GSF AA QL ++ +++S+ ++GLE +G++L R R L LTE+G R Sbjct: 19 AGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEVFLRHARIALET 78 Query: 77 LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136 L+ + P+G++RI+T+ G N + L L YP + +++ D++ IDI Sbjct: 79 LDAAIDTVSAQRAVPAGRVRISTSAAFGHNHVLPALPALLARYPALSVEVDFDDRVIDIV 138 Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT--- 193 D D A+R I S+L+ R + ++ A+P YL N P + L H LI Sbjct: 139 RDGYDIAVRGGN-IPDSALVTRPICRLNTVLVASPDYLANHGVPETPDALHAHRLIARRF 197 Query: 194 -FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 G + P D + T+D P G+ + L +++ S++Q GIA Sbjct: 198 LSGQVAPWNFTGDDKSITTID-PSGK---AMLTLSAPESLVQAACDSVGIA 244 >gi|127510963|ref|YP_001092160.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126636258|gb|ABO21901.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 299 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 128/272 (47%), Gaps = 8/272 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GS T AAE L++S+S +S+ + LE +L R R L+LT++G Sbjct: 8 RMLVFASVVEHGSLTRAAESLNISRSMVSQHLKKLEHRCQSRLLNRTTRSLSLTQEGQSF 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R +E+ + + LQ + + G + +A LG + +K F YP + + L Sbjct: 68 YRYCAELLKLAKQAETSLQPADAELQGSITLAVPQALGDGEIAPIIKTFHQHYPKVHLSL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ++ +D++ D AI++ Q S+ + +L + A+P Y+ + P+ L Sbjct: 128 LIQDRQLDLTEHQIDVAIQIGAASQ-PSVNETRLGRFDEYLVASPDYVAHHGAPVHPDNL 186 Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ I GD +P+ + N R P I+C NS + + G G+ALLP Sbjct: 187 SHHHWIGLAGDRLPRHWQFENSEGERVRLQLSPFINC---NSLQGTLSLAMQGLGVALLP 243 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 ++ N LV+++ D +Y +P Sbjct: 244 SPLISQHLANGQLVQLLPDYHLGRGALYLVHP 275 >gi|307726249|ref|YP_003909462.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307586774|gb|ADN60171.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 296 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 15/297 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F VA SF AA+ L +++S++S + GLE + +L +R R ++LTE G Sbjct: 7 DDLRAFMAVAEHRSFRRAADLLGVTRSTLSHAMRGLEDNLSTRLLHRTTRSVSLTEAGES 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + L+T E+ + P G LRI + + LLQ + EFL YP I++ Sbjct: 67 LLRRIGPLVGDLDTALEEVAGAQGNPRGTLRINGSEGAIRLLLQTVVPEFLARYPGIELD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ + + +DI D +RL + + + R + A A+P YL + P Sbjct: 127 LVAEGRLVDIVEQGFDAGVRLGEAVPRDMVAIRLGPDMRFLAVASPGYLVSHPAPTMPDA 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L +H I +P + + W D I P L +++ I++ + G GIA Sbjct: 187 LLQHQCIR--QRLPSG-KRYRWEFLKRGQDMAIDVP--GALTLDNTQLIVEAAIDGLGIA 241 Query: 243 LLPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 +P+ + + LV ++ED + P +YF + + L+AF + + A Sbjct: 242 YVPEPYARAALSDGRLVAVLEDWCPLIPGLFLYFLGTRHMPTS--LRAFIDMVRAAA 296 >gi|167625190|ref|YP_001675484.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167355212|gb|ABZ77825.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 297 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V GSF+ AAE L+++ SS++R I LE + L R R L LTE G + Sbjct: 5 MRIFIKVVELGSFSKAAEVLNMAPSSVARNIDNLEQDFNAVLLKRSTRQLLLTEAGEQFL 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E+ + L + ++P G LRI+ G+ + L FL YP ++I++ Sbjct: 65 TGARKLVSDEESLKASLSQQELQPEGVLRISVFEGFGRVKVCPILPGFLAQYPKVKIEID 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D AIR+ P SSL R L+T A+P YL P +L Sbjct: 125 LDNQLVDLHSENIDIAIRIGSP-ADSSLHARMLMTNQTSLCASPTYLAQFGSPKKPDDLL 183 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN + L+ + + W + P L I++ + GI LL Sbjct: 184 QHNCL----LLDRDRQRTYWHFHKAKQYKKVPVQGNLTSRGGTPILEAAIHHGGIVLLSS 239 Query: 247 YIVKD---NPNLVRIMEDVITPSFT------VYFCYPEALKNTGKLKAFRNFI 290 +++ D + +LVR + + TPS + +Y Y ++AF +++ Sbjct: 240 WMMDDLIQDGSLVRCLPE-WTPSLSEQSSGDIYALYSGGKHMRPVIRAFIDYL 291 >gi|254372082|ref|ZP_04987575.1| transcription regulator [Francisella tularensis subsp. novicida GA99-3549] gi|151569813|gb|EDN35467.1| transcription regulator [Francisella novicida GA99-3549] Length = 299 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 14 FETFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 73 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+TT QN+L +KE+ + ++I++ Sbjct: 74 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTTSFFAQNILINLIKEYSKKFSKVKIEV 132 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + ++ RK+ T A+P Y+ P +I + Sbjct: 133 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 190 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242 L HN I + L + + P+ S + N+ + ++ CVL GIA Sbjct: 191 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVKD N L+ +++D +Y YP+ K+K F N + Sbjct: 243 QFHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVNLV 293 >gi|152988572|ref|YP_001349664.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963730|gb|ABR85755.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 304 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 15/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F V+ GSFT AAE+L S+ +S++I LE ++G+ L +R R L+LT G Sbjct: 3 DLKDLAAFAVLVELGSFTRAAERLGCSKGQLSKRIGALERQLGVILLHRTTRRLSLTAAG 62 Query: 64 SKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + L + + LQES G++R+ + LG+ L L++F YP Sbjct: 63 AALLPEAQALRAQAQRARQAVARLQESV---EGQVRVTLPVSLGETLFDALLEDFQARYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++L L N D+ + D AIR Q + L+ R L + A+P YL EP Sbjct: 120 LLRVELDLYNGLRDLVGEGFDLAIRA-GVDQDARLVARPLFVLQEITCASPAYLARHGEP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239 L EL + + L WL + +S +++ S+++ L G+ Sbjct: 179 LRPGELRERECL----LNSHYSGHEEWLYHRRHRLERVAVSGFLASNHYSLLKKAALAGA 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA LP Y+V D + L ++ D T S ++ +P Sbjct: 235 GIARLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHP 272 >gi|330950453|gb|EGH50713.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae Cit 7] Length = 294 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 11/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++L +R R ++LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H ET + L+ + K SG LR+ GQ ++ L + P + + L Sbjct: 66 PHAKTMLHTSETARATLKGDTGKASGVLRVTAPSVFGQTVIMPLLPVLMQENPALSVDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L A+P YL +P + EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLMRRGQPSVLDELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H IT M + ++ P+ NS ++ C G G+A+L + Sbjct: 185 QHPCITL-----HAMPYWTFIRE-GGPVAIRAQGTFSANSVEAVRTACKQGLGLAMLTYW 238 Query: 248 IVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ +L++I EDVI +V P + +++ F Sbjct: 239 DVQQEIRAGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLF 281 >gi|170734982|ref|YP_001774096.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821020|gb|ACA95601.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 307 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 124/264 (46%), Gaps = 16/264 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L +F V R+GSF+ AA +L + +++SR+I E +G +L +R R L + + Sbjct: 2 LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L + ++ +IE Q + +P+G +R+A L + + L EF +P Sbjct: 62 GLALFERYAPALDRI--FEIERQHADGQEPAGTVRVAAMAGLFEVIKLEWLAEFYARHPR 119 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I +LD+ D+ + D A+R+ S + R++ M A+P YL+ P Sbjct: 120 ISIDFLLDDTPSDLIAERIDLALRIGIETGGSFRV-RRIAPGTMILAASPAYLERRGTPR 178 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238 + +EL H+ +T + M W + P G IS VN +MQ C+ G Sbjct: 179 TPRELADHDCLTVSSRQGRSM----W--RLQGPRGTQEISIDSRFSVNDMRVVMQACLAG 232 Query: 239 SGIALLPDYIVK---DNPNLVRIM 259 GIAL+P + D L R++ Sbjct: 233 LGIALVPQVLAAAAIDEGKLARVL 256 >gi|307301326|ref|ZP_07581088.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306903782|gb|EFN34369.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 302 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT A+ L++ +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ L + P G+LR+ T ++ L EF YPDIQI L Sbjct: 67 ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID + DCAIR + SLI R++ + A A+ +L+ P +L+ Sbjct: 127 VSDRTIDYLAESVDCAIRAGT-LTDQSLIARRITEMKFVACASRDFLERHPVPQHPSDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 K N G +PK + + R E +S + N + + G G+ Sbjct: 186 K-NCYVVGYFLPKTGQQMPF--HFRRGNEEIEVSGRYTVAANESTTYLAAARAGLGVIQA 242 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V++ N +V ++ D +Y YP + +L+ F +++ Sbjct: 243 PLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 291 >gi|323525546|ref|YP_004227699.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382548|gb|ADX54639.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 309 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 17/295 (5%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V G F AAE L S ++++R ++ LE +G +L R +R L+LTE Sbjct: 2 DRLRAYEVFVTVVSRGGFARAAEMLGTSPANVTRYVNELEAHLGTRLLNRTSRTLSLTEG 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + + T+ + +SV+P G+LRI + G L EF+ YP I Sbjct: 62 GETLYARCKSILDDVAETEGLVSSASVEPRGRLRINAPVSFGILHLAPLWPEFMRKYPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +DI + D AIR+ + +++ RKL T A+P YL P + Sbjct: 122 ELDVGLIDRVVDIVDEGYDLAIRISR-AGATNHAARKLATSQNILCASPAYLARAGIPAA 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLG 238 +L H I + W +DR G+ ++ C + N+ + + G Sbjct: 181 PADLLGHRCIGY----TYAATGDEW-QLIDRG-GKTHAIKVDCHMHTNNGDTARAAALAG 234 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ P +++ ++ LV ++ D P + YP + +++ +F+ Sbjct: 235 HGLIWQPTFLIGNDLRAGTLVHVLPDYRLPEIDILALYPSRRHLSARVRVMIDFL 289 >gi|269961786|ref|ZP_06176145.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833497|gb|EEZ87597.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 299 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 18/288 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE+ +L+ S +S++I+ LE E+G +L YR R LTLTE G Sbjct: 4 DDLILFSQVVEMGSFSKVAEENNLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKV 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF ++P + + Sbjct: 64 LLHSAKNVKQATQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +P+ + Sbjct: 124 MSLDNRFVDLVAGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L HN + + + D +++ V C ++ ++ + + G Sbjct: 183 LTTHNCLQYAYQTTGATDWQFKGKDGDYIVRVS--------GCFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA +P +V + LV I +++ +Y YP + K+K Sbjct: 235 GIAYVPRCLVYHDIRSGELVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282 >gi|126456629|ref|YP_001075061.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167849015|ref|ZP_02474523.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|126230397|gb|ABN93810.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] Length = 336 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTHLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHAAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|209549901|ref|YP_002281818.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535657|gb|ACI55592.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 298 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 15/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L +F VA SFT AA +L ++QS++S + LE +G++L R R + TE G Sbjct: 5 NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L KP+G ++I + ++++ L L YPDI+ Sbjct: 65 ERLRQSLAPRISEIEADIAALMAYRDKPAGTVKITLSNHAMESVVWPKLAPVLGEYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +DN +I D D +RL + ++ + R + A A+P Y + P + Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVAVASPDYFETRAVPTTP 184 Query: 184 QELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QEL HN I G L E N V R G+ N+ ++ + G Sbjct: 185 QELMHHNCINRRLDRVGGLYAWEFEKNNEEVRV-RVEGQ-----FTFNTDREMVHAALQG 238 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 GIA +P+ V+ + L +ED TP F Y+ Y Sbjct: 239 YGIAFVPESYVETHIADGRLQLFLED-WTPKFAGYYLY 275 >gi|152969739|ref|YP_001334848.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954588|gb|ABR76618.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 301 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 2/191 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L+ F V +GSFT AA+ L++ +++S+ I LE +G+ L R R +T+T +G Sbjct: 4 FSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTPEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + LE + KP G LRIA ++L L +F+ +PDI+I Sbjct: 64 EYYEKARCLLEDLEEIDASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + +K D+ D AIR P++ S+LI RK+ + A P YL+ P S Sbjct: 124 NLQVADKPADLISGNIDSAIR-GGPMEDSTLIARKIGEATLVTCATPGYLQRYGTPASPD 182 Query: 185 EL-DKHNLITF 194 EL H LI++ Sbjct: 183 ELHHGHRLISY 193 >gi|313107450|ref|ZP_07793638.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310880140|gb|EFQ38734.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 301 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF VA +G F AA Q++LS +++S+ ++ LE + ++L R R ++LTE G Sbjct: 7 LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE L PSG LR++ + L L + FL YPD++++L+ Sbjct: 67 QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D A+R + S L+ R L+ + AAP YL +PL + L Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F W +R I P +V+S L++ + G G++L+P Sbjct: 187 EHECIRFS----LSGHADRWTFRKERECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ LV ++ ++ YP + + GK + F +F+ Sbjct: 243 LYVQAELAEGRLVELLAGWKADETAIHAVYP-SRQLAGKTRVFLDFL 288 >gi|307317996|ref|ZP_07597433.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306896398|gb|EFN27147.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 302 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT A+ L++ +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ L + P G+LR+ T ++ L EF YPDIQI L Sbjct: 67 ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID + DCAIR + SLI R++ + A A+ +L+ P +L+ Sbjct: 127 VSDRTIDYLAENVDCAIRAGT-LTDQSLIARRITEMKFVACASRDFLERHPVPQHPSDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 K N G +PK + + R E +S + N + + G G+ Sbjct: 186 K-NCYVVGYFLPKTGQQMPF--HFRRGNEEIEVSGRYTVAANESTTYLAAARAGLGVIQA 242 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V++ N +V ++ D +Y YP + +L+ F +++ Sbjct: 243 PLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 291 >gi|262278639|ref|ZP_06056424.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258990|gb|EEY77723.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 298 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 21/301 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++ F V SGSFT AAE L LS+S +S I LE ++ L R+ R + LT Sbjct: 1 MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEKQLNTSLLIRNTRNIALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + ++ +++ Q +G LR ++T + GQ + L EF LYP Sbjct: 61 EIGQHFYEDFKQIQLQIDDAFERSQHLGTSITGTLRFSSTNEFGQRFILPLLPEFCRLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q ++ D+ + D IRL ++SSSL RK+ ++ A P +++N P Sbjct: 121 HLRLQYSFNSSLDDLVTEKLDLVIRLGN-LKSSSLKTRKIGEYPIYIVATPQFIQN--HP 177 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGE----PRI-SCLQVNSYLSIM 232 + N+ D+ NW + + +GE P I S + NS +I Sbjct: 178 V-------ENISDLADVPWIGHTLLNWQDSQYILQNSLGEQYSLPFIRSQYESNSITAIH 230 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Q + GIA+ P ++V ++ L+R+ D P + YP K +AF +F Sbjct: 231 QMALSSLGIAICPAWLVDEDIQQNRLIRLFPDFSLPLQNIQLLYPSTSNLPAKTRAFIDF 290 Query: 290 I 290 + Sbjct: 291 L 291 >gi|218675006|ref|ZP_03524675.1| LysR family transcriptional regulator [Rhizobium etli GR56] Length = 276 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 17/261 (6%) Query: 25 EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84 E+LHL++S++S+ I+ LE +G++LF R R +LT++G + ++ + +L Sbjct: 1 ERLHLTRSAVSKTIARLEQRLGVRLFNRTTRTQSLTDEGRFFYERCLRAIEEIRIGEAQL 60 Query: 85 QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144 + + G+LR++ + G++ L L +PD+++ ++ +D+ D A+ Sbjct: 61 ESGRREVRGRLRVSMPVLFGRHCAAPILTRLLDDHPDLELDFSFSDRVVDLLESGFDLAV 120 Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202 R + L+ R + M A+P YL+ P ++ EL H I + GD Sbjct: 121 RNGPLKDNPDLMARAIARQSMTVCASPAYLEKYGVPQTLDELAHHQGIVYRRGD------ 174 Query: 203 EDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255 D W+ +G PR S L+++ SI V G G+A L ++V+D + L Sbjct: 175 NDRPWIFPA--AVGPPREVLPKSRLRLDDLASIADAAVEGRGLAWLTCWLVRDRVLSGEL 232 Query: 256 VRIMEDVITPSFTVYFCYPEA 276 VR++ D+ + F Y +P + Sbjct: 233 VRVLTDMPSTIFEAYAVWPRS 253 >gi|163758057|ref|ZP_02165145.1| probable transcriptional regulator protein, LysR family [Hoeflea phototrophica DFL-43] gi|163761122|ref|ZP_02168199.1| probable transcriptional regulator protein, LysR family [Hoeflea phototrophica DFL-43] gi|162281673|gb|EDQ31967.1| probable transcriptional regulator protein, LysR family [Hoeflea phototrophica DFL-43] gi|162284346|gb|EDQ34629.1| probable transcriptional regulator protein, LysR family [Hoeflea phototrophica DFL-43] Length = 298 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF VA +F+ AE+L LS + S+ + +E VG +L R++R ++LTE G++ Sbjct: 7 LRVFAEVAEHKNFSAVAERLGLSPAMTSKHVKHVEARVGARLLNRNSRNVSLTEAGAQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L + +L +S+ P G LR++ + + L + L P + + Sbjct: 67 QTIRPLLDELAKAEAQLISNSLSPRGTLRMSMPVWMSNPAFAKLLTAYHQLNPHVTFDVD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + I + + D A+R+ + LI RKL + AAP +L N P + +L+ Sbjct: 127 LSGRKISMVEEGVDLALRVAFKLD-EGLIARKLADVTFQLVAAPAFLDNFGRPKTTGDLN 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIM-QYCVLGSGIAL 243 ++ + + F VD RPI V++ SI+ Q V G G A+ Sbjct: 186 NAPMLAYDQVAADGRIKFGGEDGVDVKLRPI--------LVSANESILHQAAVAGMGFAM 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++ +D + L ++ + P + Y + K+++F +F+ Sbjct: 238 LPNWAAQDDIEDGRLEAVLPMIAWPKLHIQAIYADRSYLPAKVRSFLDFL 287 >gi|90578297|ref|ZP_01234108.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] gi|90441383|gb|EAS66563.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] Length = 296 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 13/273 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + F VA S F+ AA+QL S S +SRQ+S LE +G+ L R R + LT+ G Sbjct: 4 FDGIIEFVAVAESHGFSSAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRQVNLTDAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + L+ L + SG LR++ + + L F YPD+ I Sbjct: 64 LYYQQCRGLVNGLQQASESLNTQQITLSGTLRVSAAGAFAEEHVAPALMAFAKSYPDLTI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +++ ++ D D AIR ++ S L+ RKLV M A A+ YL EP Sbjct: 124 EMDFNSRMVNFIEDGIDFAIRY-GALKDSGLVARKLVDRPMAAVASQDYLARYGEPTHPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L +H+ I + +W+ + R+ N+ +++ C G GIA Sbjct: 183 QLKQHSCI--------IANNDHWIFEKEGNTINTRVHGRWTSNNSNAVISACEEGLGIAY 234 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P + D+ +LV I++D + + Y Sbjct: 235 MPKSSLAKGLDSGSLVPILQDFWGKGNSSWIVY 267 >gi|254198250|ref|ZP_04904672.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|169654991|gb|EDS87684.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] Length = 301 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 75/308 (24%), Positives = 144/308 (46%), Gaps = 26/308 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVL 237 +L H I G+ P+ F+ EP + ++V++ + + Sbjct: 184 ADLCAHRCIVLGEQ-PRVEWRFD----------EPHPAAVEVSAAFLTNDGGAARTLALE 232 Query: 238 GSGIALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 G+GIAL + V P+L R++ + + + ++ YP +++ F +++ + Sbjct: 233 GAGIALKSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGV 290 Query: 293 K-ARDWKF 299 + R W++ Sbjct: 291 ELRRAWRW 298 >gi|254180008|ref|ZP_04886607.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|184210548|gb|EDU07591.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 301 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 10/300 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W P + N + + G+GIAL Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDWKF 299 + V+ + L R++ + + + ++ YP +++ F +++ ++ R W++ Sbjct: 239 KSIWDVRPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298 >gi|262278706|ref|ZP_06056491.1| transcriptional regulator LysR family [Acinetobacter calcoaceticus RUH2202] gi|262259057|gb|EEY77790.1| transcriptional regulator LysR family [Acinetobacter calcoaceticus RUH2202] Length = 313 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G KL R R LT+ G+ Sbjct: 13 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ + E+ ++ KP G+LR+ + G + + + EF YP++ ++ Sbjct: 73 ERCRQVISIVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKNYPELTVEYT 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ TI A+P YL+ P S ++L Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKYGVPKSPEDLK 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P D++ L L ++ ++ G+ALLP + Sbjct: 193 NHACLRLVN--PSITADWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALLPMF 250 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 D N L I+ + +P VY P R+FI K R W Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292 >gi|209809599|ref|YP_002265138.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio salmonicida LFI1238] gi|208011162|emb|CAQ81589.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio salmonicida LFI1238] Length = 297 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 22/264 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L + VV GSFT AA++L ++ S++S+ I+ LE+ + +KLF R R L +TE G K++ Sbjct: 5 LATYIVVVNEGSFTAAAKKLGVTPSALSKLITRLESALSVKLFERTTRSLLITESGKKIY 64 Query: 68 RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + S + + I++ S + PSG L +A +LQ + FL+ YP IQ++L Sbjct: 65 Q-QSVIMVEAAQQAIDISSSEHIVPSGSLTVAAPKAFLTIVLQALVTPFLIKYPKIQLKL 123 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + DI++ D RL KP + LI +++ +++ A+P Y++ PL +E Sbjct: 124 RASDGDINMIAQGIDVVFRLTDKP--TEGLIMKEIGKVNLSLCASPSYIEERGLPLHPKE 181 Query: 186 LDKHNLITFGDLIPKCM-----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H+ + G+ E+ + +A R VN + G G Sbjct: 182 LPNHDCLYLGETTDHIWEFVKGEESHVIAVTGR---------YAVNHSQMRLNGVRDGFG 232 Query: 241 IALLPDYIVKD---NPNLVRIMED 261 I + PD+++K+ N ++V ++ D Sbjct: 233 IGIFPDFVIKEALANNDVVPVLSD 256 >gi|50119864|ref|YP_049031.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49610390|emb|CAG73834.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 310 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 139/288 (48%), Gaps = 10/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA GSFT AAE+++L+ S++S+ I+ LE+ + ++LF R R L+L++ G +R Sbjct: 12 LFVCVADVGSFTAAAEKMNLTSSAVSKGIARLESRLQVRLFDRTTRRLSLSDSGVAFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE ++ +Q + P GK+RI G+ + + F+ +P + + Sbjct: 72 CTSVLADLEEAELAMQSETTDPRGKVRIDLPASFGRLHVLPVILNFIEKHPLLTPHITFS 131 Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D ++ D +R+ I S++L R L A+P YL +P + Q+L++ Sbjct: 132 DRFVDPVVEGIDIIVRIGGSNIWSNTLGHRYLGVQQQIFCASPSYLLKNGQPKNRQDLEQ 191 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP 245 H I + + W + +P R + + + + + G GIA LP Sbjct: 192 HACIVYAE---NNSMTTPWHFSGGQPHDTERKAFPARIAIGDGEGQVTAVLAGLGIAQLP 248 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++K D LV ++ ++ T + + ++ + ++ AF + + Sbjct: 249 SWLIKQQLDKGTLVEVLPELTTEGLPINLAWQKSRQTIPRISAFLDIL 296 >gi|330807000|ref|YP_004351462.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375108|gb|AEA66458.1| Putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 307 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 134/294 (45%), Gaps = 14/294 (4%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L AR+ GS+T AA L +S S+IS+ + LE + LF R R LTLT + Sbjct: 2 DRLTGLIAFARAASLGSYTAAARDLSVSPSAISKSVQRLEQHFELSLFNRTTRSLTLTAE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + ++E + S +PSG L++ +G N+L + F YP + Sbjct: 62 GRDLYERALRILREVEDIEQAAAASRAEPSGILKVTAPPPIGLNILAPAIPRFRERYPKL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L ++ DI D A+R+ + S LI R L + A+A+P YL PL Sbjct: 122 AIDLRLGDQFSDIVEQGIDVAVRVGD-LADSRLISRTLGPHRICAFASPAYLAKRGTPLE 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L H+ + F + W +V DR + + + +++ ++ G GI Sbjct: 181 LSDLADHDCVNF--RYQSSGQALRWPFSVGDRMVEIAPDAAIVIDASDAVAAVLAAGGGI 238 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290 + P Y+ P + R + P F V +PE+ + + +KAF F+ Sbjct: 239 GISPTYVAA--PYVARGELKPLFPQFAVDRFSITALWPESRRGSPNVKAFVGFL 290 >gi|307301452|ref|ZP_07581212.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306903509|gb|EFN34097.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 301 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +R+F V SG F AA+ LH+S S++R ++ LE +G +L R R L LT G Sbjct: 4 WQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTAAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + S P+G + + G+ + + +FL YP +Q+ Sbjct: 64 GYVADCRRILGEIAEAEANAAGSFTAPAGLVTVTAPALFGRIHVLPVILDFLDHYPAMQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + I ++ ++ + D AIR+ + +S L+ R++ ++ +P Y EP S Q Sbjct: 124 KTIFVDRVTNLVDEGLDVAIRI-ASLPASGLVARRIGSVRQVLCGSPDYFARFGEPGSPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +H +I L F + PI PR+ C N+ +++ V G G++ Sbjct: 183 ELARHRIIGREGLFGHSEWLFGRDNNIRVPI-SPRLIC---NTNDAVLAAAVAGWGLSRF 238 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y V + + R ++ D ++ + E + +++AF +F Sbjct: 239 QSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDF 286 >gi|299770569|ref|YP_003732595.1| LysR substrate binding domain protein [Acinetobacter sp. DR1] gi|298700657|gb|ADI91222.1| LysR substrate binding domain protein [Acinetobacter sp. DR1] Length = 311 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + L+ RKL+ I A P YL P + Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPHD 189 Query: 186 LDKHNLITFGD 196 L +H I G+ Sbjct: 190 LKQHECIYLGE 200 >gi|285019715|ref|YP_003377426.1| transcriptional regulator, lysr family transcription regulator protein [Xanthomonas albilineans GPE PC73] gi|283474933|emb|CBA17432.1| putative transcriptional regulator, lysr family transcription regulator protein [Xanthomonas albilineans] Length = 302 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 14/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V F AA+ L +S +S++RQ++ LE +G +L R R ++ + G+ Sbjct: 5 EAMRVFVAVVDRNGFNAAADALGISTASVTRQVAWLEQRLGSRLLNRTTRRVSPSSVGAA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + + + + E ++ PSG LRI L L + YP + + Sbjct: 65 YYQRCQLLLAEFDDMEAAVGEQALTPSGTLRINAPFSFSIARLGPRLAGYSARYPQVALD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +DI + D AIR+ + + + +LI RKL ++ AAP YL P E Sbjct: 125 LSLSDRVVDIVEEGFDLAIRITRHV-APTLIARKLGEAQVYLCAAPSYLARAGTPRMPTE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 + H + + + + + P G+ ++ L N+ + + + G GI Sbjct: 184 IADHAFLNYSYMPLDTL-------ILHGPDGDTQVRVHGSLCANNGDVLREAAIAGMGIV 236 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L PD++ + ++ LVR++ D VY Y K+++F +++ Sbjct: 237 LQPDFMAEAALEDGRLVRVLPDHQLGPIGVYAVYANRSHLAPKVRSFIDYL 287 >gi|229591140|ref|YP_002873259.1| putative LysR family transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229363006|emb|CAY49961.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 293 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 141/290 (48%), Gaps = 12/290 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT AAEQL LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRLFCQVMESGSFTAAAEQLGLSKQFVSRRLIQLEDRLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G +R++ + L L FL +P + + Sbjct: 64 SYYESALRLLSEVEQVEQGIAGQNSEPRGTIRLSAPLSFAMAHLGCLLPLFLQRHPQVSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ S+LI R++ +I A+P YL P Sbjct: 124 EVDLSDRPVDLIGEGYDLVLRI-GTLEDSTLIARRIASIPRVYCASPDYLALRGTPQKPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L +H+ + +G W + +S ++VN+ + + G G+ Sbjct: 183 DLAEHDCLPYGH-----GRQVQW--RFKGKVQALNVSGRMRVNNGDLLRDTAIAGLGVTY 235 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +IV + + LV ++++ + T+ YP+ +++ ++A F+ Sbjct: 236 LPTFIVGEAVKDGRLVTVLDEFAPEALTLSAVYPQHRQSSRPVQALVEFL 285 >gi|53725430|ref|YP_102663.1| transcriptional regulator [Burkholderia mallei ATCC 23344] gi|67642686|ref|ZP_00441439.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|76811674|ref|YP_333256.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121599164|ref|YP_992800.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124384622|ref|YP_001026411.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126449851|ref|YP_001080316.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|126453910|ref|YP_001065972.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134282397|ref|ZP_01769102.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167002929|ref|ZP_02268719.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|167719886|ref|ZP_02403122.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] gi|167738887|ref|ZP_02411661.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167824482|ref|ZP_02455953.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167846019|ref|ZP_02471527.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167894592|ref|ZP_02481994.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167919255|ref|ZP_02506346.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|226192921|ref|ZP_03788533.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237811984|ref|YP_002896435.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242315641|ref|ZP_04814657.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254177469|ref|ZP_04884124.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254180031|ref|ZP_04886630.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254199600|ref|ZP_04905966.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254205918|ref|ZP_04912270.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254261169|ref|ZP_04952223.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254358681|ref|ZP_04974954.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52428853|gb|AAU49446.1| transcriptional regulator [Burkholderia mallei ATCC 23344] gi|76581127|gb|ABA50602.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121227974|gb|ABM50492.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|124292642|gb|ABN01911.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126227552|gb|ABN91092.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|126242721|gb|ABO05814.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|134246435|gb|EBA46524.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|147749196|gb|EDK56270.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147753361|gb|EDK60426.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|148027808|gb|EDK85829.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|160698508|gb|EDP88478.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|184210571|gb|EDU07614.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|225935011|gb|EEH30986.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|237503348|gb|ACQ95666.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|238523874|gb|EEP87310.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|242138880|gb|EES25282.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|243061476|gb|EES43662.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254219858|gb|EET09242.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 313 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + E ++ +PSGKL++ LGQ+ + + YP++Q+ L Sbjct: 66 LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ + + + S L+ ++L A+ Y++ P Q+L Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H + G + P D W + P GE ++ +VN ++ G GI Sbjct: 186 AGH--VCLGMVAPGLYWD-EW--KLVGPQGEQSVTLAPPPFRVNVAEALAAGIREGMGIG 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y N + VR+M + + +Y Y A R ++ K R W Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|262173316|ref|ZP_06040993.1| transcriptional regulator LysR family [Vibrio mimicus MB-451] gi|261890674|gb|EEY36661.1| transcriptional regulator LysR family [Vibrio mimicus MB-451] Length = 299 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L KHN + + + +F N++ V ++ ++ + + G Sbjct: 183 LVKHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV + + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272 >gi|119896404|ref|YP_931617.1| putative transcriptional regulator [Azoarcus sp. BH72] gi|119668817|emb|CAL92730.1| putative transcriptional regulator [Azoarcus sp. BH72] Length = 298 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 123/279 (44%), Gaps = 15/279 (5%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ + +A SGS T AA+ L +S + R ++ LE +G++LF R R L+LT++ Sbjct: 2 DKLKAMQIAVAIADSGSLTAAADSLDISLPVVVRTLAALEAGLGVRLFNRSTRRLSLTDE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + + L +V PSG++ + + GQ + L F+ Y + Sbjct: 62 GRDYLARCRQILADIHDAEAALASDAVVPSGRVVVTAPVMFGQQHVAPALTRFVQHYGQM 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L ++ +++ ++ D A+R+ I+ SL+ L T+ AAP YL P Sbjct: 122 RVELRLHDRVVNLLEEHIDVAVRI-GAIEDQSLVAHALGTLRRIVVAAPAYLAARGTPQH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +EL H I F W +D G L N + C G G Sbjct: 181 PRELAAHECIVFNG------NSAGWWRFIDDGHEFGMTVDGRLTYNHVAPALDACRAGMG 234 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 + Y + D+ L+ ++E P V+ +P A Sbjct: 235 LGTFIAYQIADDLHAGRLLPVLEAFELPPRPVHVAFPHA 273 >gi|170731633|ref|YP_001763580.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169814875|gb|ACA89458.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 325 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 125/249 (50%), Gaps = 8/249 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + + + L +F +GS + AA +L L +S++S++++ LE +G +L +R +R LT Sbjct: 21 LEMNLNDLYLFVQAVEAGSMSAAARRLGLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 80 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G++ + ++ + + + +P+G +RI +++ + Q++L L + +P Sbjct: 81 PVGAEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAITHP 140 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 + +Q+ ++ +DI+ + D A+R P+ S+L+QR L + AAP YL Sbjct: 141 KLLLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 200 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P + +L +H+ + G P+ VD PR+ LQ + ++Q G Sbjct: 201 PDTPADLAQHDGLHPG---PQPWRLQRGGDAVDV---TPRLR-LQADESTLLLQAATAGL 253 Query: 240 GIALLPDYI 248 G+A LPD+I Sbjct: 254 GLACLPDWI 262 >gi|107022912|ref|YP_621239.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686845|ref|YP_840092.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105893101|gb|ABF76266.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652560|gb|ABK13199.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 297 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 5/273 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L VF VAR SFT AA +L +SQS++S+ + LE +G++L R R ++ TE G Sbjct: 5 NFNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVSTTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L + ++ L + KP+G +RI T ++ L+ L YPDI+ Sbjct: 65 EALFNAVAPRIDEISAQLAALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDYPDIR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +D +I + D +R + + R I M AAP YL + P Sbjct: 125 VELSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRISPDIRMAMVAAPSYLDGRKPPKKP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L H+ +T K + + W + + R++ + N+ ++Q + G GIA Sbjct: 185 QDLLDHDCVTLRLATAKGI--YAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFGIA 242 Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273 + + I + +RI+ P F Y Y Sbjct: 243 FVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAY 275 >gi|323499599|ref|ZP_08104568.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315339|gb|EGA68381.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 294 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 3/269 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V + GSF+ A+ L +S +++S+ IS LE + +LF+R LTLTE+G L Sbjct: 5 QLPIFIDVVKRGSFSAASRNLGVSPAAVSKSISQLEKHLKQRLFHRSTHSLTLTEEGRLL 64 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 T ++ L+ ++S + GK+++ I GQ L+ L EFL LYPDI++ L Sbjct: 65 FERTVDLVEALDENVSLSIDASSEMKGKIKVNLPIHFGQTLVYPKLLEFLDLYPDIELDL 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 D++ ID+ + D I R + S LI R+ + + + Y P + Q+L Sbjct: 125 HFDDRAIDLVENGFDLGIGNRIN-EDSRLIARQYYELQLTYVCSRSYADEHGIPETPQQL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-ALLP 245 H IT+ + +N++ +P+ + L VN+ S G GI A+ Sbjct: 184 IDHECITYRSPTTGRINPWNFVDQ-GKPLQITPEARLVVNNPNSAYLAAKAGFGITAISQ 242 Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYP 274 Y K +LV I+ + S V+ YP Sbjct: 243 SYFEKGEIDLVSILNEFQPNSSPVWLYYP 271 >gi|293607510|ref|ZP_06689845.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814081|gb|EFF73227.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 301 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSFT AA+ L + +++S+ + LE +G++L R R +T+T +G + Sbjct: 7 IRGFARVVEAGSFTRAADSLDMPNATLSKMVQDLEAHLGVRLLQRTTRRVTVTPEGRAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE KP G LRI +++L + +FL YPDI+I Sbjct: 67 EKALRIVRDLEDIDGSFNAIQGKPKGYLRIDVGGSTARDVLIPAISDFLARYPDIRIDFG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ +D+ D DC IR + SSL+ R + + + A P YLK P+ +EL Sbjct: 127 VSDRPVDLISDNVDCVIR-GGTLGDSSLVARHVGSADLITCATPAYLKQHGTPIYPEELK 185 Query: 187 DKHNLITF 194 + H L+ + Sbjct: 186 NGHKLVNY 193 >gi|288961835|ref|YP_003452145.1| transcriptional regulator [Azospirillum sp. B510] gi|288914115|dbj|BAI75601.1| transcriptional regulator [Azospirillum sp. B510] Length = 318 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 101/194 (52%), Gaps = 1/194 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D D+LR F + +GS + A +++L+ S +S++++ LE +L R R L LT Sbjct: 1 MLDDIDELRTFVRIVAAGSLSAAGREMNLALSVVSKRLASLERRTDTRLVARSTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G +LH + ++ + L V+P G LR+ LG+ + + + YP Sbjct: 61 EEGRRLHAHAQRILAEIAEAEEALSHGRVEPRGVLRVGAPAALGRIHVGPVCRALVEAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + L L ++ +D+ + D +R+ P + S+L+ R+L H AP YL+ P Sbjct: 121 GISVDLCLTDRMVDLIDEGMDVVVRIGVP-RDSTLVMRRLADNHRVVVGAPAYLERRGHP 179 Query: 181 LSIQELDKHNLITF 194 ++ ++L++H+ I + Sbjct: 180 VAPRDLERHDCIQY 193 >gi|149909798|ref|ZP_01898449.1| probable transcriptional regulator transcription regulator protein [Moritella sp. PE36] gi|149807130|gb|EDM67086.1| probable transcriptional regulator transcription regulator protein [Moritella sp. PE36] Length = 300 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 135/289 (46%), Gaps = 17/289 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ L+ F +AR G+ + A L++ ++++R+I LE +G +LF + G +T+ Sbjct: 1 MNWNDLKYFLALAREGTISGAGRVLNVKHTTVARRIEALELSLGTRLFDKSRTGYAMTQA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 L++ + K+ T + +G L++ +L L+ + EF +PDI Sbjct: 61 AEDLYQQVVSMEEKVRTIDRQAANQDSALAGPLKLTIAFELANRLIIPKMGEFCQRFPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL++ +D++ AD AIR+ P L+ +++ +H YA+P +L++ Sbjct: 121 DMQLLMTKNLVDLAAMEADLAIRM-TPNPPDYLVGAEIMKLHHGIYASPAHLQS------ 173 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + K +I F + +W V + + +S L+V+ S+ G G+A Sbjct: 174 --RVTKTKVILFQSENKRP----DW---VRKQASDAEVS-LRVDDVGSMAVAAAHGFGLA 223 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP +I P LVR+ + + ++ L+ T +++A + + Sbjct: 224 KLPCFIGDTQPGLVRLDVQMPPSDWGIWILNHVELRTTARVRACKEHLI 272 >gi|262089730|gb|ACY24824.1| LysR family transcriptional regulator [uncultured organism] Length = 290 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 26/295 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA +GSF+ A+Q+ +S++ ++R IS LE + +L R R +TLT+ G + Sbjct: 1 MRVFSQVAANGSFSATADQMEMSRAMVTRCISELEEWLNARLLQRTTRKVTLTDAGEQFL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++ + E + + SG+LR+ + G + + + +FL L+P ++I + Sbjct: 61 RRCQQILTLTDEVIEETANLNSELSGQLRLTCSASFGYSQMASAIADFLALHPKLKIDMN 120 Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + I++ D AIR+ P+ LI R+L + A+P YL+ P S + Sbjct: 121 VSDVSINLVDARVDLAIRISSNPDPM----LIARRLGSCASILAASPKYLEQFGTPESPE 176 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238 L H +T + K + F + +++NS+ S ++ + G Sbjct: 177 SLVHHRCMTH-TIAGKYLWQFTRATETTK---------IEINSHFSTNDASILLHAAIAG 226 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + P Y+ D LV ++ D P + YP L+A +F+ Sbjct: 227 GGITMQPTYLANDYIRAGKLVALLPDWSVPEMAINALYPSRRHMPAALRALLDFL 281 >gi|209884860|ref|YP_002288717.1| putative HTH-type transcriptional regulator YcjZ [Oligotropha carboxidovorans OM5] gi|209873056|gb|ACI92852.1| putative HTH-type transcriptional regulator YcjZ [Oligotropha carboxidovorans OM5] Length = 297 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 120/272 (44%), Gaps = 11/272 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + T+ G +L Sbjct: 9 LAAFVVVAEERSFTKAAARLGMAQSALSQIVRRIEERLGLRLLSRTTRSVAPTDAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H+L++ L E +PSG +RI T + +L +K L PD+ +++ Sbjct: 69 ATLGPMLHELDSAIASLSELRDRPSGTIRITTVEHAAKTILVPAMKRLLTGNPDVTVEMT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ D D +RL + + R I M AP Y + P S +L Sbjct: 129 IDYGLADVVADRFDAGVRLGGEMAKDMIAMRIGPDIPMAIVGAPDYFRTHPVPASPAQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245 H I +P +W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHRAINL--RLPTSGTLNSWRLKRGGRDVRVRVEGPLILNTIDLILDAALDGHGLAYLPL 246 Query: 246 ----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273 Y+ D LVR++ TP Y Y Sbjct: 247 DQAQSYL--DKGRLVRVLSK-FTPDLPGYHLY 275 >gi|167576742|ref|ZP_02369616.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 317 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 114/253 (45%), Gaps = 16/253 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA LHL+QS+IS+QI LE +G LF RHARGL LT +GS L+ Sbjct: 13 LRCFEAAGRLGSFTKAAGALHLTQSAISQQIRQLEARLGYPLFVRHARGLELTPKGSVLY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATATAFGSLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLSEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID + D D AIR P +L L ++ A AAP YL + + Sbjct: 129 AEFHAIDRETMRADDIDVAIRW-DPFDYRALHVEPLFDEYLVAAAAPAYLGRHPPRATAK 187 Query: 185 ELDK----HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + H+ + D P+ +E WL A V GE R + S + V G Sbjct: 188 WISSVVPLHDASAWPD-APRYVEWRTWLDAVVPGYAGELRGPEFNLASL--AIGAAVAGQ 244 Query: 240 GIALLPDYIVKDN 252 G+ + + +V D Sbjct: 245 GVVVCREALVNDE 257 >gi|330982423|gb|EGH80526.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 300 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 11/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++L +R R ++LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H ET + L+ + SG LR+ GQ ++ L + P + I L Sbjct: 66 PHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L A+P YL +P + EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARHGQPSILDELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H IT M + ++ P+ NS ++ C G G+A+L + Sbjct: 185 QHPCITL-----HAMPYWPFIRE-GEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYW 238 Query: 248 IVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ +L++I EDVI +V P + +++ F Sbjct: 239 DVQQEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLF 281 >gi|311105758|ref|YP_003978611.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760447|gb|ADP15896.1| bacterial regulatory helix-turn-helix protein, LysR family protein 75 [Achromobacter xylosoxidans A8] Length = 325 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 131/277 (47%), Gaps = 21/277 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA + SFT AA +L LS+S+I + I+ LE +G +L +R R ++L+++GS + Sbjct: 25 LLAFVRVADTQSFTAAAAKLGLSRSAIGKCIARLELGLGARLLHRSTRSVSLSDEGSVFY 84 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + P G+LRI + LG+ + L+++L +P+++ + Sbjct: 85 EHAQRILSEVDNATDAMASRKQAPRGRLRIDLPVSLGRLHIMPLLRDYLRDWPEVEADVS 144 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ID+ D D AIR+ S L++R L + A AAP YL P + +L Sbjct: 145 FSDDYIDLVRDGVDVAIRIGGETD-SRLVRRVLAPHRLIACAAPGYLDRHGAPATPDDLA 203 Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 H + + G L+P W V+ G+ R +++ + ++ + G G Sbjct: 204 SHQTLAYTHAGALVP-------WRFAVN---GQERAVHVAGRMRLGNTEALRDAALAGEG 253 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 IA L ++V ++ L ++E V V YP Sbjct: 254 IAQLGAFLVGEDLRAGRLTPVLESVAPAGAPVCAVYP 290 >gi|121597572|ref|YP_991315.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124382277|ref|YP_001025725.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126446665|ref|YP_001077805.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|167828911|ref|ZP_02460382.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|226200055|ref|ZP_03795604.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|251766876|ref|ZP_02265237.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254176369|ref|ZP_04883027.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254201104|ref|ZP_04907469.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254205074|ref|ZP_04911427.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254301349|ref|ZP_04968793.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|121225370|gb|ABM48901.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|126239519|gb|ABO02631.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|147748716|gb|EDK55791.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147754660|gb|EDK61724.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|157811418|gb|EDO88588.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|160697411|gb|EDP87381.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|225927907|gb|EEH23945.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|243064469|gb|EES46655.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|261826727|gb|ABN00248.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] Length = 312 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 11 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF+ +P ++++ Sbjct: 71 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P + + + Q G Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 247 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 G+ALLP+++V+D+ +++ + F VY YP A K++A+ +FI Sbjct: 248 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 302 >gi|187918801|ref|YP_001887832.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717239|gb|ACD18462.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 312 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 11/282 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS D + F V +GSF AAE+++L++S++ + I LE +G++L R R +LT Sbjct: 1 MSDILDGVTTFVRVVETGSFALAAERMNLTRSAVGKVIVRLEKRLGVRLLNRTTRSQSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + +LE + +L +P G+LR++ G + L +P Sbjct: 61 EDGQAYYDRCVRALAELEAAEADLDSGRREPQGRLRVSVPQAFGHYCVAPVLLGLARKHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I + + ++ +D+ + D +R+ S SL RKL H AAP YL P Sbjct: 121 QLKIDISITDRFVDVIEEGFDLVVRVGPLADSVSLAARKLGMQHASIGAAPAYLARHGTP 180 Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +++EL H +I + G P + D + + R +P+ L + I+ + Sbjct: 181 RNVEELRGHAVIGYLRAGSAQPWDVVDVD--GQIRRAQVQPQ---LGFDDMKGIVDAALA 235 Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEA 276 G G+A LP +++ + LV +ME+ P+ ++ +P++ Sbjct: 236 GFGLAWLPSWLLTRYEKTGELVTVMENCFRPAQEIHLVWPKS 277 >gi|115358785|ref|YP_775923.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284073|gb|ABI89589.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 303 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 11/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE + ++L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ + ++ P G +R+ N + L++F YPD+++ L Sbjct: 67 ERCTRLLADLDDAETLFDDAGAAPRGAIRVDLPERFALNKVIPALQDFHARYPDLRVVLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S +L Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRIGELSQINCASPAYLARHGTPRSPDDLP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D G + S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDTGALQTVKMRSVVAVNSSQAYLACCLAGLGLIQ 242 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + ++ +LV ++ + V +P + +++ F +++ Sbjct: 243 APREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNSRHLAPRVRIFVDWL 292 >gi|120611211|ref|YP_970889.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589675|gb|ABM33115.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 311 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 9/291 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F V G F A L + +S +SR++S LE ++G++L R R L+LTE G Sbjct: 3 DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSELEAQLGVRLLQRTTRKLSLTEIG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R V + + E +P G +R++ + L Q +L + FL +P ++ Sbjct: 63 ESYLRHCQAVREAAQAASDAVAEVQTEPRGTVRVSCPVTLAQTVLGELMPIFLERHPQVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ + N+ +D+ + D A+R+R + S S++ ++L + A+P L P + Sbjct: 123 VEMQVTNRAVDLVEEGVDVALRVRPNLDDSGSMVVKRLDDVLQVLVASPALLARQGTPAT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + EL + + + P + R + L++ + G+G+ Sbjct: 183 LAELSRLDSMAMS--APDGRTALRLVGPDGREEAVQLTPRYVADDLLTLKFAALAGTGMC 240 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY+ + LVRI+ TP V+ +P G A R F+ Sbjct: 241 WLPDYMCQAELGEGRLVRILPGWSTPRGVVHAVFP---SRRGLAPAVRRFL 288 >gi|91782250|ref|YP_557456.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686204|gb|ABE29404.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 312 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 12/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F V +GSFT AA L ++ +SR I+ LE+ + +L R R ++LTE G + Sbjct: 5 ENMRMFVRVVEAGSFTKAASLLSVATPQVSRAITELESRLRTRLLNRTTRHMSLTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + + E ++ +PSGKLRI T GQ+ L + + +PD+ I Sbjct: 65 YLQRCEQILEYVGLAEAEAAGAAAQPSGKLRIHGTTSFGQHYLAPLIARYNQRFPDVLID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L + D+ + D ++ + + + S+L+ +++ T A+P YL P+S+++ Sbjct: 125 LVLAQRVPDMIEEGFDVSVVVARELADSALVSQRIGTTCTVLCASPQYLSKRGMPVSLED 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241 L+ H + L+ + W+ D P + R + L VN ++ + G GI Sbjct: 185 LNTHTCL---QLVLPDVPSGQWI--FDGPDAQVFRHTRSTPLTVNVAEALAEAIREGMGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + + +LVR+++ S +Y Y K++ F F+ Sbjct: 240 GPLPLSLALQGFRDGSLVRVLDGHRLQSNNIYALYASRQYLDAKIRTFVEFL 291 >gi|154244965|ref|YP_001415923.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159050|gb|ABS66266.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 311 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 9/296 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +RVF + SFT AA L L +SS++ + GLE +G++L R R ++ T G Sbjct: 15 FDAMRVFTRIVERRSFTQAAGDLGLPRSSVTDAVKGLEARLGVRLLQRTTRHVSPTLDGE 74 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + LE + KPSG +R+ ++ L L FL YP I++ Sbjct: 75 AYYQRCVSLLADLEDAEGAF--VGAKPSGLIRMDVHGTQARHFLLPGLPRFLATYPGIRL 132 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R + + +S LI+R+L T+ +A+P YL+ P + + Sbjct: 133 HMSETHQQLDLIREGFDCILRAGE-LANSPLIRRRLATLERGTFASPGYLRRFGTPRTPE 191 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 EL+ H ++ G L + L TV + + + + L V + + LG G+ Sbjct: 192 ELEGHEMV--GLLATDTAKISPLLFTVAGKVRQLTLPASLTVTGPETNVAAACLGIGLIQ 249 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +P Y V LV ++ D + V+ Y + + +L+ +++ + R+ Sbjct: 250 VPRYRVAAELAGGALVEVLADFPPAALPVHVLYSHTRQLSPRLRVLIDWMAAQFRE 305 >gi|326629917|gb|EGE36260.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 300 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 8/247 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 H ++ + L P T P G + L VNS + C+ G GI Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFET---PYGMQWVKTGGMLTVNSTETWHTACLAGLGIIQT 242 Query: 245 PDYIVKD 251 P V++ Sbjct: 243 PRIAVRE 249 >gi|320641650|gb|EFX11038.1| LysR family transcriptional regulator [Escherichia coli O157:H7 str. G5101] Length = 314 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 140/291 (48%), Gaps = 13/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 15 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 75 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L + +I +C F ++ G I L N + Q+C+ G GIA Sbjct: 194 LSALPCL----VIKECDHPFGVWQLRNKE-GHHAIKVTGPLSSNHGEIVHQWCLDGQGIA 248 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 249 LRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298 >gi|91790390|ref|YP_551342.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gi|91699615|gb|ABE46444.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 302 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 138/288 (47%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V GSF+ AA + + Q S ++ ++ LE ++G +L +R G+T TE G+ + Sbjct: 7 IQLFIRVVDLGSFSKAAADVGIGQPSATKLVAQLEKQLGSRLLHRSTHGVTPTEIGALYY 66 Query: 68 RVTSEVYHKLETTQI--ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + H +E + L +S V+ G LRI+T++ G+ +L + F+ L+P +QI+ Sbjct: 67 EKCKLIAHHIEEAETVAALLQSQVQ--GGLRISTSVAFGRRVLVPLVMRFMKLHPQLQIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ +D+ D AIR+ P+ S+L R L A+P YL+ EP + Sbjct: 125 LNFEDRYVDLVEQGIDVAIRM-GPLADSTLGARYLGVNPWVLVASPEYLERRGEPSVPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H + + + F + P+ P L+ N+ +++ G G+A LP Sbjct: 184 LAAHEALIYSTVQGDARWHFTGTDGLTLPV--PVKGPLRSNNLSALLAAARGGMGVAALP 241 Query: 246 DYIVKDN--PNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ + ++R ++ D P ++ YP K+ F ++ Sbjct: 242 RYVAHKSIRSGVLRPLLTDWTLPQQEIHAVYPSPQLVPTKVSGFVAWL 289 >gi|71908713|ref|YP_286300.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71848334|gb|AAZ47830.1| transcriptional regulator, LysR family [Dechloromonas aromatica RCB] Length = 300 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 128/278 (46%), Gaps = 20/278 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F A GS + AA ++ + I R++ LET +G+KL R R LT+T +G Sbjct: 6 QIEAFVSAATRGSLSAAARVEGVTPAIIGRRLDALETRLGVKLLLRTTRKLTITFEGQAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + L + + SV+ SG+LR++ G+ + + +F+L P++++ L Sbjct: 66 LEDCQKTLNDLANAEAAVSLGSVRASGQLRVSAPSGFGRQHVAPLVGDFMLANPEVRVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + DCA+R+ + + SSL+ +L + A+P YL P +L Sbjct: 126 NLSDRLVDLVNENIDCAVRIGE-LTDSSLVSVRLGEMRRMVVASPAYLVTHGVPREPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240 HN ++ G + WL D GE + L+VN + ++ + G G Sbjct: 185 SGHNCLSLG-------QQRGWLFR-DPASGE--VDALKVNGSFECNDGAVLHEWALAGRG 234 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 +A + V + L +++ P +Y +P+ Sbjct: 235 LAWRSLWEVGQDLKEGRLTSVLDAWQAPPMGIYAVFPQ 272 >gi|27378552|ref|NP_770081.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27351700|dbj|BAC48706.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 305 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 126/269 (46%), Gaps = 20/269 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F R GSF+ A ++ LS +S+SR I LE ++G++L R R L LT+ G Sbjct: 7 MELFVSAVREGSFSAAGRRVGLSPASVSRYIGELEAQLGVQLLNRSTRHLGLTDAGKIFF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + T +V H +E + P G LR+ + G +L + F LYP+++++L Sbjct: 67 QRTEQVLHGIEDAEAAALSLQTAPRGTLRVHSRTLFGIRVLSPLIPGFQKLYPELKVELR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSIQ 184 L + + D D ++ + + L+ R+L+ A+P Y + REP + Sbjct: 127 LSERRPQLREDEFDVDFQI-QAAKDPGLMLRRLLRSERILVASPDYVGRMPKLREP---E 182 Query: 185 ELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++ +HN +T+ D++ K M N L + P S N+ + + V G G Sbjct: 183 DITRHNCLTYWMGPDDVVWKFMRR-NRLREIVVP------SSFGSNNGVVLCDLAVAGHG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV 269 IALL DY V + R++ + P F V Sbjct: 236 IALLDDYTVAEQLKSGRLVR--LLPGFRV 262 >gi|86147816|ref|ZP_01066123.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222] gi|85834454|gb|EAQ52605.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222] Length = 294 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 17/268 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA F+ AA+QL S S +SRQ+S LE VG+ L R R ++LTE G ++ Sbjct: 10 FVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTESGHTYYQQC 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 ++ L+ ++ + SG LR++ +N L EF +PD+ I++ + Sbjct: 70 KDLVIGLQQANEQVTSQQAQLSGTLRVSAAGAFAENHAAAALMEFAKDHPDLTIEMNFNT 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++ D D AIR + + S L+ RKLV M A A+ +Y+ P ++L H+ Sbjct: 130 NMVNFIEDGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQNYIDQFGSPTQPEQLKWHS 188 Query: 191 LITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248 I WL D +P+ R+ + N+ ++++ C G GI LP Sbjct: 189 CII--------ANSDQWLFEKDGKPLNAVRVHGRWKSNNSSAVLKACEGGLGIVYLPKSS 240 Query: 249 VKD---NPNLVRIMED---VITPSFTVY 270 K N LV ++E+ T S+ VY Sbjct: 241 FKGGLANGKLVPVLEEYWGAGTSSWIVY 268 >gi|134293420|ref|YP_001117156.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136577|gb|ABO57691.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 319 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A G+ + A +L S ++ S +++ LE + +LF R+ R L LTE+G H Sbjct: 9 MRLFVEAAALGNLSAAGRKLGFSPAAASARLAKLEAALSTRLFDRNTRQLRLTEEGRLYH 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S +E + L S GK+RI+ + D G++LL L+ F+ P+++I L Sbjct: 69 HHCSIALRAIEDGEAALTASRGIARGKVRISASADFGRHLLNSWLEAFVRTQPELKIALD 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D D AIR +P + SLI R+L A+P YL C PL +L Sbjct: 129 LTDSVSDLLQDEVDLAIRFGRP-NNPSLIARRLAPNWRVLCASPDYLAKCGTPLVPADLV 187 Query: 188 KHNLITF 194 H + Sbjct: 188 AHEFVVL 194 >gi|317402965|gb|EFV83505.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 299 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 119/243 (48%), Gaps = 11/243 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GS + AA L +S++ +SR ++ +E VG++L +R R L+LT G++ Sbjct: 7 MQVFVEVADRGSLSAAAVHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTPAGAETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + + P G LR+ T++ G L + +++ L+P + L+ Sbjct: 67 PRCRQMLDMVGDLRSAVSTPEDTPRGLLRMTTSMSFGSRHLARVVTDYVKLHPGTSVDLM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ + D A+R+ + +LI RKL A+P YL+ EP +++L Sbjct: 127 LVERAVNLVEERVDLAVRITNDLD-PNLIARKLAVCRSVVCASPEYLQREGEPARVEDLS 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 N +T FG + + D P+ P + N ++Q + G+GIA+L Sbjct: 186 LRNCLTHSYFGKSLWRFERD-------GVPVDVPVSGNISANEVSVLLQAALEGAGIAML 238 Query: 245 PDY 247 P Y Sbjct: 239 PTY 241 >gi|218700582|ref|YP_002408211.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218370568|emb|CAR18375.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] Length = 302 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 26/302 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L L+ S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLTSSAISHNIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQ 233 +P +L H + F P + F+W + I I V++ L + Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELKIAVAGNIILDDVDAELDAV- 230 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288 ++G+GI L +K D L ++ED IT P F +Y YP + L+AF + Sbjct: 231 --LMGAGIGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIY--YPNRQYMSCGLRAFLD 286 Query: 289 FI 290 ++ Sbjct: 287 YV 288 >gi|205354776|ref|YP_002228577.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274557|emb|CAR39606.1| hypothetical lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 299 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 8/247 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 7 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 67 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 H ++ + L P T P G + L VNS + C+ G GI Sbjct: 186 SHAVVHY-SLTPGVSSPGFAFET---PYGMQWVKTGGMLTVNSTETWHTACLAGLGIIQT 241 Query: 245 PDYIVKD 251 P V++ Sbjct: 242 PRIAVRE 248 >gi|170737245|ref|YP_001778505.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819433|gb|ACA94015.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 301 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 16/285 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VAR+ SFT AA QL +SQS++S + LE +G +L R++R +T TE G +L Sbjct: 13 LTALIAVARAKSFTRAAVQLGVSQSAVSHAVRALEERLGARLLARNSRTVTPTEVGERLL 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ L + P G +R+ + +L LKEFL YPDI+++L Sbjct: 73 HIVAPRLKEIDAEMSALSDLGGSPRGSIRLTAPDYPSRTILAPKLKEFLPKYPDIKVELS 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +DN+ +D+ + D +RL + I + + + Y P + +L Sbjct: 133 IDNRFVDLVAEQFDAGVRLGEAIAQDMIAVQIGPDVRFTVVGTKRYFATHAVPRTPGDLV 192 Query: 188 KHN-----LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H+ L+ G L + W RP+ L N + V G G+ Sbjct: 193 HHSCVNLRLMAHGGL-------WAWEFEKGGRPVNVRVDGQLACNDIYECLAGAVAGLGL 245 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 A +P+ + + +L+ ++ D Y YP + +G + Sbjct: 246 AYVPEDLAEPYIKAQHLIPVLTDWCPSWGGFYLYYPSRRQPSGAM 290 >gi|117619783|ref|YP_855742.1| putative HTH-type transcriptional regulator YcjZ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561190|gb|ABK38138.1| putative HTH-type transcriptional regulator YcjZ [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 297 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 9/279 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++L F VVAR SFT AA QL SQS+IS+ + LE +G+KL R R +T T Sbjct: 1 MKENLNELTTFMVVAREQSFTRAAAQLGTSQSAISQTVKTLEQRLGLKLLSRTTRSVTPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + ++++ +L KP+G +RI + +L + FL YP Sbjct: 61 EAGERLIALVGPALAQIDSGLSQLTALRDKPAGTIRITADEYAIRAVLWPKISAFLHHYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++L D +DI + D +R I + I M AAP YL P Sbjct: 121 DIRVELSTDYGLVDIVAERYDAGVRRGGLIAKDMIATPISPEIKMLVAAAPRYLAAHGRP 180 Query: 181 LSIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 QE+ H I +P F+W R + L NS ++++ + G Sbjct: 181 SRPQEIASAHQCINL--RLPTQGGFFSWSFLEGGRELKIRGEGQLVFNSIGNVLEAALDG 238 Query: 239 SGIALLPDYIVKDNPNLVRIME-----DVITPSFTVYFC 272 G+A LP + + R+ E +++ P + +Y+ Sbjct: 239 YGLAYLPQSMAEPYLADGRLEEVLAGYNMVHPGYYLYYT 277 >gi|222083114|ref|YP_002542479.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727793|gb|ACM30882.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 298 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 128/281 (45%), Gaps = 6/281 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ +L F V GSFT AA +L LSQS++S + LE + ++L R R L++TE G Sbjct: 5 DFSELAAFITVVEEGSFTRAAAKLGLSQSALSYAVRMLERRLDVRLISRTTRSLSMTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +++ L KP+G +RI T + +L L + YPDI Sbjct: 65 ERLFNNLRPAFDHIDSEIAALTALRDKPAGTIRITTFRHAARMVLWPALLKLAPEYPDIV 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D DI D IRL + ++ + R + M +P Y N + P + Sbjct: 125 VEISVDEGLTDIVAGRFDAGIRLGEQVEKDMVSVRVSPEVRMAVVGSPSYFTNRKRPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 ++L+ H+ +++ + + W D E R+S L +N + + G G+ Sbjct: 185 RDLNNHSCVSYRQSRGGGL--YAWEFERDGVELEARVSGSLILNDNEMLENAALDGLGLV 242 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280 + + V + L+R++ED P + YP ++T Sbjct: 243 YVFESQVSQHIAEGRLIRVLEDWCPPFPGYHLYYPSRRQHT 283 >gi|207858845|ref|YP_002245496.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710648|emb|CAR35006.1| hypothetical lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 299 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 20/253 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 7 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 67 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 186 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235 Query: 239 SGIALLPDYIVKD 251 GI P V++ Sbjct: 236 LGIIQTPRIAVRE 248 >gi|167578109|ref|ZP_02370983.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 305 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 1/194 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V ++GSFT AA L + ++++SR++ LE ++G++L +R R L LT Sbjct: 1 MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS + + +L+ + + P G LR+ G + L F YP Sbjct: 61 EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D++++++ + +D+ D D A+RL + S L+ R+L + YA+P YL P Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRL-GVLADSDLVARRLGSFATGVYASPSYLMRHGVP 179 Query: 181 LSIQELDKHNLITF 194 EL H +T Sbjct: 180 EHPGELGAHRALTL 193 >gi|107101390|ref|ZP_01365308.1| hypothetical protein PaerPA_01002427 [Pseudomonas aeruginosa PACS2] gi|254235047|ref|ZP_04928370.1| hypothetical protein PACG_00927 [Pseudomonas aeruginosa C3719] gi|126166978|gb|EAZ52489.1| hypothetical protein PACG_00927 [Pseudomonas aeruginosa C3719] Length = 311 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 143/303 (47%), Gaps = 28/303 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L F V G F A + + +S +SR+I+ LE + ++L +R R L LT Sbjct: 1 MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + E + + E SV+P G+LR++ + + + L L FL +P Sbjct: 61 EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYL--KNC 177 +Q++++L N+ +D+ + D A+R+R+ + +L+ R+L AAP + ++ Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRHL 180 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLS 230 P +++L + D AT+ P G EPR L V+ ++ Sbjct: 181 EHPEDLEDL---------PFLGAIHNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVL 228 Query: 231 IMQYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + V G G+ LLP+ Y ++ + +LVRI+ P T+ Y L + ++ A R Sbjct: 229 RKKAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIR 285 Query: 288 NFI 290 I Sbjct: 286 ALI 288 >gi|76818306|ref|YP_335865.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|126457669|ref|YP_001076259.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|76582779|gb|ABA52253.1| LysR-family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|126231437|gb|ABN94850.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] Length = 306 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF+ +P ++++ Sbjct: 65 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P + + + Q G Sbjct: 185 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 241 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 G+ALLP+++V+D+ +++ + F VY YP A K++A+ +FI Sbjct: 242 DGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 296 >gi|124268707|ref|YP_001022711.1| LysR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261482|gb|ABM96476.1| transcriptional regulator, LysR family [Methylibium petroleiphilum PM1] Length = 319 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 104/190 (54%), Gaps = 1/190 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + +A+SGSFT AA++L LS++++S++I+ LE VG+ L R R + LTE G Sbjct: 15 WPHVHALGTIAQSGSFTLAAQRLGLSKAAVSQRIAELERAVGVPLLQRTTRSVRLTEAGK 74 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T+ + ++E + + +++ + +P G +R+ + LG+ + L+ FL +P I++ Sbjct: 75 QLVDETAASFAQIEQSLLGVRDLASQPQGLVRMTAPVALGRQHVGPQLESFLRAWPGIRV 134 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L ++ ++++ + D A+R S + KL A+P YL+ P Sbjct: 135 ELDLSDRLVNLAHEGFDLAVR-HTSAPPDSHVAWKLCASRTLLLASPAYLRRRGTPRHPD 193 Query: 185 ELDKHNLITF 194 EL H+ + + Sbjct: 194 ELAGHDCLPY 203 >gi|116050842|ref|YP_790335.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115586063|gb|ABJ12078.1| putative ranscriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 323 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 9/245 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V GSFT AA+ L S +++SRQ++GLE + +L R+ R + +TE G + + Sbjct: 7 IRTFVRVVEHGSFTQAAQTLGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++++S SG+LR+ +LG L L ++L +PD+ + L Sbjct: 67 EHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + + D I L + + S+L+ R L + AAP YL P + ++L Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H + P C + W+ +R GE + L+VN + G G+ LL Sbjct: 187 RHRCLNVA--APSCPQ--GWVFVGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240 Query: 245 PDYIV 249 P ++ Sbjct: 241 PGFVA 245 >gi|325928945|ref|ZP_08190106.1| transcriptional regulator, LysR family [Xanthomonas perforans 91-118] gi|325540634|gb|EGD12215.1| transcriptional regulator, LysR family [Xanthomonas perforans 91-118] Length = 307 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 130/294 (44%), Gaps = 20/294 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G F AAE L + +++S+ IS LE +G+ L R R + ++ G+ + Sbjct: 7 IRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVTLLERSTRRVRVSNDGAAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + L + P G+LR+ T LL L EF YPDIQ+QL Sbjct: 67 ARVRHLLTELDDVEATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPDIQLQLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ + DCAI R +LI RK+ ++ A+P YL P ++L Sbjct: 127 VTDRTVDVIGENIDCAI--RSTADDGALISRKIGSLAWTTCASPDYLARYGVPTHPEQLK 184 Query: 188 KHNLITFGDLIPKC--------MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 G ++D L V P S + VN + + + G Sbjct: 185 SPAFPVVGYFSAHSGKAPPLHFLDDGAPLEIV------PNCSVM-VNESNAHLATGLAGL 237 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ D++V+ + LV +++D V+ Y + + + K++ F ++ Sbjct: 238 GLIHTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWV 291 >gi|123443978|ref|YP_001007948.1| putative DNA-binding transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090939|emb|CAL13821.1| probable lysR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 303 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE+E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|59713207|ref|YP_205982.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|59481455|gb|AAW87094.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 316 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 1/174 (0%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 V GSFT+ AEQ +L +S IS+QIS LE E+G++L R R L+LT G+++ + Sbjct: 13 VTELGSFTNVAEQKNLDRSVISKQISRLEEELGVRLLNRTTRSLSLTAAGNEMVNQAKLL 72 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 L T Q +P G LRI +++ G+ +Q + F YPD++ +L L+++ + Sbjct: 73 RDLLNNTHRLAQNYHSEPRGILRITSSMMFGRQYVQDAISVFQKQYPDVKCELRLEDRVV 132 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 DI + D R+ +P ++SSLI RK+ + A+P +++ + +I++L+ Sbjct: 133 DIVQEGFDIGFRIGRP-KNSSLISRKIARSRLLIVASPDFIQQHGKIETIEKLE 185 >gi|70734267|ref|YP_257907.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68348566|gb|AAY96172.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 303 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 29/306 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L+VF V GS + AAEQL + S++SR +S LE ++ L R R + LTE+G Sbjct: 6 DELQVFVCVIECGSISAAAEQLAQTPSAVSRSLSRLEAKLDTTLINRTTRRMDLTEEGRY 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ + L PSG+LRI + + + EF LYPDIQ++ Sbjct: 66 FFEQAKLILDQMDELEERLSSRQRNPSGRLRINAASPFMLHAIVPYVAEFRSLYPDIQLE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ D AIR+ + S+L R L +H A+P YL P S+ E Sbjct: 126 LNSNDLIIDLLEQSTDIAIRI-GVLADSTLHARSLGCSPLHILASPDYLARHGTPQSVAE 184 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H L+ F E N W L V DR +P IS +S ++ + G GI Sbjct: 185 LAGHTLLGFTQ-----TETLNHWPLRHVHGDRWQIQPGIS---ASSGETLRHLALEGQGI 236 Query: 242 ALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTG---KLKAFRNFIF 291 A L ++ D+ P L P VY+ +N+ +++ F +FI Sbjct: 237 ACLSHFMTIDDIRAGRLQPVLASFNSGYRQPINAVYY------RNSQLALRIQCFLDFIQ 290 Query: 292 LKARDW 297 K D+ Sbjct: 291 GKLADY 296 >gi|66045716|ref|YP_235557.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63256423|gb|AAY37519.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 305 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/289 (22%), Positives = 132/289 (45%), Gaps = 5/289 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL +Q Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASHEYLEQHGTPLDLQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H +I + ++A + + VNS + C G G+ + Sbjct: 183 ALAQHQVIEYFSTSTGKRYGLEFMAD-GMGVAHASACSIAVNSADGYVAACEAGFGLIQV 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + LV ++ P + YP + + +++ F +++ Sbjct: 242 PRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWL 290 >gi|302186706|ref|ZP_07263379.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae 642] Length = 294 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 11/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++L +R R ++LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H ET + L+ + SG LR+ GQ ++ L + P + I L Sbjct: 66 PHAKTMLHISETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L A+P YL +P + EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLTRRGQPSLLDELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H IT M + ++ + P+ NS ++ C G G+A+L + Sbjct: 185 QHPCITL-----HAMPYWPFIRDGE-PVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYW 238 Query: 248 IVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ +L++I EDVI +V P + +++ F Sbjct: 239 DVQQEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPNRVRLF 281 >gi|298717157|ref|YP_003729799.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361346|gb|ADI78127.1| Uncharacterized HTH-type transcriptional regulator yeaT [Pantoea vagans C9-1] Length = 304 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 12/255 (4%) Query: 1 MSFDWDKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M DKL + R+ GSF+ A L L Q +ISR ++ LE + +L +R R L Sbjct: 1 MGNKMDKLLLMTCFVRTVERGSFSAAGRDLGLGQPNISRHVANLEEHLQTRLLHRSTRKL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT +G + + + +E + +E +V P+G LR+A L L ++ FL Sbjct: 61 SLTPEGERYYLEARRILEAVEESDSSFRE-NVSPTGLLRVACPTALAHTFLVPHIPVFLD 119 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YP++++ L ++++ I++ + A+ AIR+ ++ S++ R+L A+ YL Sbjct: 120 RYPELELDLQINDRYINLVDEGAELAIRIGH-LEDSAMRARRLGMFVRVCVASNKYLAKH 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + ++L KH+ + + L F + I P L+VNS +I ++ Sbjct: 179 GTPDTPEDLKKHDCLIYTLLTTGATWRF-------QDISVPVSGRLRVNSPEAIQKFVNA 231 Query: 238 GSGIALLPDYIVKDN 252 G+GIA P+++ K+ Sbjct: 232 GTGIAQGPEWLFKEG 246 >gi|209549263|ref|YP_002281180.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535019|gb|ACI54954.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 22/295 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSF AA+ + +S++S+ + LE + +KL R R +T+T QG + Sbjct: 7 IRAFVRVVEAGSFAKAADTMGAPRSTVSKLVQDLEASLSLKLLERTTRSVTVTPQGIAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ E + SGKLR+ +L L EF LYP+I++ L Sbjct: 67 ERALRLIADLDEMNNEATRGRLATSGKLRVDIGGTFANAILIPRLPEFYALYPEIELHLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + DI + DC IR + S+S++ RKL ++ + A P YL+ P S +L Sbjct: 127 VTERQADIVEEGIDCVIRAGD-LSSASIVARKLCSVEIVTCATPGYLEKYGVPASPSDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISC-----LQVNSYLSIMQYCVLG 238 + ++ ++ F + P+ GE +I L + + +Q + G Sbjct: 186 RDHIF---------VQYFFARSLKAAPVRLMKGEEKIEIYSPIKLSTSDATAHLQGILAG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +++ + + LV IM D P + V+ P + K + F +++ Sbjct: 237 LGIGQTFEFLARPHIARGTLVPIMNDWAPPRYPVHILRPAGRFPSVKYQVFADWV 291 >gi|254228928|ref|ZP_04922350.1| transcriptional regulator [Vibrio sp. Ex25] gi|151938605|gb|EDN57441.1| transcriptional regulator [Vibrio sp. Ex25] Length = 321 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 29/306 (9%) Query: 2 SFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + DW ++ + V GSF AA +L+ + S+IS+++ LE ++G++L R R ++ T Sbjct: 26 TMDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQT 85 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ ++ ++ E + + P+G L+I T+ +G L L +FL YP Sbjct: 86 EAGALFYQRAKNQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYP 145 Query: 121 DIQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 DI +QL L + ++S+D R + + S S L YAAP YLK Sbjct: 146 DITLQLTTTLPGQLPELSLDL--FISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYG 203 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237 P +++L +HN++ +G+ R I R + ++ + L Sbjct: 204 TPQCVEDLTEHNVLIWGE-------------KPSREIKTNRGKRISLSGNFATTNPEALF 250 Query: 238 -----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G GI + + ++KD+ LV I+ D+ TVY YP+ + K F + Sbjct: 251 HGAKRGMGILMTNNVMIKDDLKSGALVPILPDITADKATVYAYYPKLDYQHTRTKLFLD- 309 Query: 290 IFLKAR 295 +LK+R Sbjct: 310 -YLKSR 314 >gi|238910365|ref|ZP_04654202.1| hypothetical lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 299 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 20/253 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 7 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 67 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 186 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235 Query: 239 SGIALLPDYIVKD 251 GI P V++ Sbjct: 236 LGIIQTPRIAVRE 248 >gi|116253006|ref|YP_768844.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257654|emb|CAK08751.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 300 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 18/264 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V G F+ AA ++ S++S+ ++ LET +G +L R R L LT +G Sbjct: 11 EMEVFVSVVERGGFSAAATARRMTPSAVSKLLTRLETRLGARLVNRSTRRLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + E Q S+ + SG++RI T+ G ++L + F+ L+P + + Sbjct: 71 YERCITILADI--AEAERQASTGEQASGRIRINTSGSFGNHVLAPLVPTFMALHPAVTLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + AD AIR P+++SSLI RKL A+P YL +P +I + Sbjct: 129 ISHTDRIVDLMEERADVAIRA-GPLKNSSLIARKLGVTGKIIVASPGYLSRHGKPRTIAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241 L H I F + +E ++ R GE P LQV S+ + G+G+ Sbjct: 188 LRHHCRIGFS--YARAIEGWSL-----REGGETVTIPITPGLQVGDGESMRHLALSGAGL 240 Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262 A L + V+ D LV ++E+ Sbjct: 241 ARLAAFTVRADIDAGRLVPVLEEA 264 >gi|88857152|ref|ZP_01131795.1| transcriptional regulator, LysR family protein [Pseudoalteromonas tunicata D2] gi|88820349|gb|EAR30161.1| transcriptional regulator, LysR family protein [Pseudoalteromonas tunicata D2] Length = 315 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 140/296 (47%), Gaps = 12/296 (4%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+ +++L+ VF V G+ T AA+ + LS++ +S + LE+++G+KL R R L Sbjct: 1 MNVSFEQLKSMVVFAQVVEQGNLTAAAKHIGLSRAVVSYHLKKLESQLGVKLLNRSTRSL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 +LT+ G++ ++ + + +++ +P G L+I +++G ++ L EF Sbjct: 61 SLTQAGNEYYQSCRIIAEQATLANQQMENLKHEPEGLLKITCPVNVGLQMVVPALNEFRR 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYP I++ ++L ++ ++I + D AIR P+ SSL KL T+ AP Y K Sbjct: 121 LYPKIELDVMLTDEVVNIMQEGIDLAIR-GAPLVDSSLQASKLSTLATCLCGAPDYFKKR 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + +L++H+ + + K L+ R + N+ + + Sbjct: 180 GRPTTPTDLEQHDWVIY-----KLTSGAIKLSKGSRSYSVAVKGTISTNNAAARTAFIEG 234 Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ +P Y L I++D + +Y +P ++ KL+ +++ Sbjct: 235 GHGLGRIPVYDAWPKIQAGTLETILDDYQLSNIDIYGVFPPGSASSKKLRLLIDYL 290 >gi|254248204|ref|ZP_04941524.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124874705|gb|EAY64695.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 303 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 19/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAEQL L + ++S + LE + I+L R R + LT +G+ + Sbjct: 7 MRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + +++ P G +R+ N + L +F YPD+++ + Sbjct: 67 ERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPDLRVVIS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S EL Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDELP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D GE S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLGLIQ 242 Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P D + + +LV ++ + V +P TG+ A R IF+ DW Sbjct: 243 APRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFP-----TGRHLAPRVRIFV---DW 291 >gi|198246047|ref|YP_002217567.1| LysR substrate binding domain-containing protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940563|gb|ACH77896.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625349|gb|EGE31694.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 300 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 20/253 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AAE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD 251 GI P V++ Sbjct: 237 LGIIQTPRIAVRE 249 >gi|167838893|ref|ZP_02465670.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 323 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 124/257 (48%), Gaps = 21/257 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EFL YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q+ + N+ ID+ D D A+R+R +P Q+++++ R L AP L+ P Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 L +L + + GD FN +A P G EPR L ++I Sbjct: 185 LVPDDLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTI 233 Query: 232 MQYCVLGSGIALLPDYI 248 + + G GIA LP+ + Sbjct: 234 REAVLDGVGIAALPESM 250 >gi|77459989|ref|YP_349496.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383992|gb|ABA75505.1| putative LysR-family transcriptional regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 311 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 113/265 (42%), Gaps = 12/265 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F V GSF+ A + ++ SSISRQI +E + +L YRH R +T TE G L Sbjct: 12 LRLFVAVLDHGSFSEVARREGVAPSSISRQIQLMEQALNQQLLYRHTRAVTPTEAGRMLG 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +LE + LQE +P+G +RI + GQ L L YP +Q+ + Sbjct: 72 HHARLVLVQLEEAEQALQEQQSEPTGLVRINAPVVFGQRHLTPWLGRLCERYPKLQLDIQ 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ID + AD R+ P+ SS+ R L A+P YLK P +L Sbjct: 132 QTDHYIDPLQEGADLLFRI-GPLHDSSMQARILAPHRFQVAASPAYLKRYGTPQHPDDLA 190 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLP 245 +H + + W D+ P + N ++ Q V G G+ + P Sbjct: 191 RHQCLAYKG----ATGQQRWFFRQDQGEWAPYAVKGPITGNHADTLTQAAVQGLGLVMFP 246 Query: 246 DYIVKDNPNLVRIMEDVITPSFTVY 270 +++ + + E + P Y Sbjct: 247 SWLIGEA-----VREGTLVPVLGEY 266 >gi|87121544|ref|ZP_01077432.1| transcriptional regulatory protein [Marinomonas sp. MED121] gi|86163076|gb|EAQ64353.1| transcriptional regulatory protein [Marinomonas sp. MED121] Length = 295 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 96/182 (52%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + ++GSF AAE+L + ++S+ I LE E+ +L R R ++LTE G K + Sbjct: 1 MRIFVTLVKAGSFAKAAERLQIKSPTVSKAIQLLEKELHTQLVVRSTRTMSLTETGQKYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++L+ + + +++ P GKL + + + LGQ+LL + +F+ YP++++++ Sbjct: 61 EKADFILNELDELENDTKQAQGTPKGKLMVTSPVSLGQHLLAPLMPKFMKRYPELEVEID 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N D+ D D AIR +KP L + + A+P YL P EL Sbjct: 121 LSNHWRDLKRDGYDVAIRSKKPGADLGLYCLPIKPLLPILVASPDYLAEHGTPAHPNELK 180 Query: 188 KH 189 H Sbjct: 181 AH 182 >gi|115352763|ref|YP_774602.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282751|gb|ABI88268.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 295 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 13/248 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SF AA +L++S SS +R I G+E +G +L R R L+LT+ G H Sbjct: 7 MRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAG---H 63 Query: 68 RVTSEVYHKLETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +++ H +E +I+ E ++ +P G L+IA + G ++L + F +P I Sbjct: 64 LYLAQIRHVIE--EIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTQHPAI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ +D+ + D + L + I +++L+ R L + AAP Y++ P+ Sbjct: 122 VPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIH 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H+ +TF F+ T R P S N L I + + G GIA Sbjct: 182 PHDLASHSCLTFHADFAGEYLSFDHEPT--RVAVRPNKSASSNNIGL-IRNWALSGMGIA 238 Query: 243 LLPDYIVK 250 +LPD++V+ Sbjct: 239 VLPDFLVE 246 >gi|332558400|ref|ZP_08412722.1| LysR family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332276112|gb|EGJ21427.1| LysR family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 297 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 130/271 (47%), Gaps = 12/271 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR+F VAR+ S + A L L +++ R+I+ LE +G+ LF + +G LTE Sbjct: 1 MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + +LQ + SG++RI LL L + P + Sbjct: 61 GQRLLAHAERAEQAVGEAAEDLQ-GAAGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++Q++ + ++S AD AI + +P ++ L +KL +H A+ YL + Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178 Query: 183 IQELDKHNLITF-GDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++L H L+ + D+I K ++ L + P +S +Q+N + G+G Sbjct: 179 LEDLKAHQLVGYIPDMIFDKELDYLTGLGSGSVPFASNSVS-VQLN-------WLRAGAG 230 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271 + ++ D+ + P LV+I+ + ++ S + + Sbjct: 231 VGIVHDFAMPSAPELVKILPESLSLSRSFWL 261 >gi|332163127|ref|YP_004299704.1| putative DNA-binding transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|83318556|emb|CAI77370.1| putative lysR-family transcriptional regulator [Yersinia enterocolitica W22703] gi|318603990|emb|CBY25488.1| putative transcriptional regulator LYSR-type [Yersinia enterocolitica subsp. palearctica Y11] gi|325667357|gb|ADZ44001.1| putative DNA-binding transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 303 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE+E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|114569100|ref|YP_755780.1| LysR family transcriptional regulator [Maricaulis maris MCS10] gi|114339562|gb|ABI64842.1| transcriptional regulator, LysR family [Maricaulis maris MCS10] Length = 296 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F VA GSFT AAE+ ++ + S+QI+ LE + +LF R R + LT+ G Sbjct: 5 DALRLFCSVAELGSFTKAAEREAMTPGAASKQITALEQRLQARLFERTTRSVRLTDAGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + ++ P+G LR+A +D G L + F+ +P ++++ Sbjct: 65 LLDRVRPWLDEYDGLEQGVADARSAPAGVLRVAAPVDFGARRLMPIITRFMNDWPGVEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D IR+ + S+LI ++L M A+P YL P + Sbjct: 125 LSLADRMVDLVNEGFDVGIRIGN-LPDSALIAKRLAAACMSVVASPDYLARAGRPEHPSD 183 Query: 186 LDKHNLI 192 L +H ++ Sbjct: 184 LAQHEIV 190 >gi|77458675|ref|YP_348181.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382678|gb|ABA74191.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 305 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 134/291 (46%), Gaps = 12/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F R G ++ AA +L +S SS++RQ++GLE E+G L R R ++T G Sbjct: 7 LKMFVETVRCGGYSSAARKLGISTSSVTRQVAGLENELGASLLNRTTRNTSVTVAGQTYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + G+LRI+ ++ G+ ++ L E L +P ++I + Sbjct: 67 EKAVAILDAIDEADAVVADRGSDAQGRLRISVPVEFGRQIIAPQLGELLDRHPGLEISVS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D ++RL + S ++ +++ A+P YL P ++L Sbjct: 127 LSDQVSDLLSEQIDVSVRLGSSVVSDDIVSKRVGGFQRWIVASPDYLSGHAVPAHPRDLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H + F +W D + + LQ N+ + + V G G+ALL D Sbjct: 187 EHQCLRF----DYAGSHQHWTFQGDEETIQLNVHGRLQSNNADILREAAVAGRGVALLAD 242 Query: 247 YIVK---DNPNLVRIMEDV-ITP---SFTVYFCYPEALKNTGKLKAFRNFI 290 ++V+ + L R++E + P S + Y + + ++ F +F+ Sbjct: 243 WLVRADVEAGRLTRLLEGYEVNPGNASCCINALYLPNHRGSSRINVFIDFL 293 >gi|148260287|ref|YP_001234414.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146401968|gb|ABQ30495.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5] Length = 315 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 10/293 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F VA + SFT AA +L +S+ ++S+ IS LE +G L R +R L+LTE G Sbjct: 6 DLEAWALFAKVAETRSFTRAASELGISKPTVSKAISRLEARIGTALLNRTSRRLSLTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + R + + E + E + + PSG +R+ + G + L E YP++ Sbjct: 66 RRAARSAGRILTEGEALETEAMDQATAPSGLVRLTAPMSFGIAHVAPLLPELFETYPELS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L ++ +D+ D AIR+ + S+L R++ + AP Y + P Sbjct: 126 VDLHLADEVVDLVGGGFDIAIRIAA-LPDSALRTRRVCRVRRLLVGAPEYFERQGRPEHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H + + L F VD G P L+VN+ ++ V G G+ Sbjct: 185 GDLARHVCLGYAYLPSSSRWHFRHATGEEVDVVPGGP----LRVNNADALRPMLVAGRGL 240 Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 A+ P+++ ++ R+ M D P + P + ++ A +F++ Sbjct: 241 AVQPEFMAAEDIAAGRLEVAMADWSMPPIALNIVTPPSGLRPARVTAVIDFLW 293 >gi|116692700|ref|YP_838233.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170738050|ref|YP_001779310.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|116650700|gb|ABK11340.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|169820238|gb|ACA94820.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 303 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 19/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAEQL L + ++S + LE + I+L R R + LT +G+ + Sbjct: 7 MRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + +++ P G +R+ N + L +F YPD+++ + Sbjct: 67 ERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPDLRVVIS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S EL Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDELP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D GE S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLGLIQ 242 Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P D + + +LV ++ + V +P TG+ A R IF+ DW Sbjct: 243 APRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFP-----TGRHLAPRVRIFV---DW 291 >gi|289624171|ref|ZP_06457125.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651658|ref|ZP_06483001.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869351|gb|EGH04060.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 306 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AA++L LS S++S+ ++ LE+ +G++LF R R L LTE+G+ H Sbjct: 14 IETFVAVANAGSFTAAADRLSLSNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + LE + L +P+G+LRI G+ + F + ++ ++ Sbjct: 74 AVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 133 Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P+ + + R L T + AAP YL+ P + ++L Sbjct: 134 FTDRFVDILEEGIDLAVRIGGPPVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTFEDL 193 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 H I FG WL D+ E R + L + + + + GIA L Sbjct: 194 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 250 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++++ LV I+ + T ++ +P ++ K++A Sbjct: 251 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 295 >gi|258622452|ref|ZP_05717474.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585152|gb|EEW09879.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 299 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L KHN + + + +F N++ V ++ ++ + + G Sbjct: 183 LVKHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALHKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV + + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272 >gi|15964182|ref|NP_384535.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073358|emb|CAC41866.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] Length = 296 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT A+ L++ +++++ I GLE + KL R R + +T G+ + Sbjct: 1 MRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ L + P G+LR+ T ++ L EF YPDIQI L Sbjct: 61 ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID + DCAIR + SLI R++ + A A+ +L+ P +L+ Sbjct: 121 VSDRTIDYLAENVDCAIRAGT-LTDQSLIARRITEMKFVACASRDFLERHPVPQHPSDLE 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 K N G +PK + + R E +S + N + + G G+ Sbjct: 180 K-NCYVVGYFLPKTGQQMPF--HFRRGNEEIEVSGRYTVAANESTTYLAAARAGLGVIQA 236 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V++ N +V ++ D +Y YP + +L+ F +++ Sbjct: 237 PLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 285 >gi|293608417|ref|ZP_06690720.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828990|gb|EFF87352.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 311 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGVIRMSVPKAVGHFMIHPHLPEFLKRYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + L+ RKL+ I A P YL P + Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPHD 189 Query: 186 LDKHNLITFGD 196 L +H I G+ Sbjct: 190 LKQHECIYLGE 200 >gi|194292790|ref|YP_002008697.1| regulatory protein, LysR:LysR, substrate-binding [Cupriavidus taiwanensis LMG 19424] gi|193226694|emb|CAQ72645.1| Regulatory protein, LysR:LysR, substrate-binding [Cupriavidus taiwanensis LMG 19424] Length = 339 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 126/294 (42%), Gaps = 26/294 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F + +GS + AA QL +Q ++SR++ LE +G++L R + LTE G + Sbjct: 26 DLMQTFVRIVEAGSLSRAAAQLQTTQPTVSRRLQTLEQLLGVRLLQRSTHAMKLTEDGER 85 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E+ + +++ PSG LR+ GQ +L G L FL YP++ ++ Sbjct: 86 CYERARELVADWARFEADVRGVGHAPSGTLRVVVPHAFGQEVLVGPLASFLRQYPEVSVE 145 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +L ++ D + DCAI + + + L+ +L + AAP P Q+ Sbjct: 146 WLLHDRTPDFIAEAIDCAIHVGE-VHEPGLVAVRLAEVPRAVIAAPSLFDGKPLPRRPQD 204 Query: 186 LDK----------HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 L+ N I +L + + PR+S +S ++ Sbjct: 205 LEDLPWLALRTFYRNEIVLQNLQTQARHGLTF---------APRMST---DSLYALHAAA 252 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LG G+A+ +I ++ L+ ++ +Y YP+A KL+ F Sbjct: 253 RLGLGVAVGSSWIFAEDIASGRLLHLLPQWQADPLPIYLVYPQARFYPAKLRLF 306 >gi|193077418|gb|ABO12231.2| putative transcriptional regulator LysR family [Acinetobacter baumannii ATCC 17978] Length = 310 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 13/255 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D LR F V + +F++ A + +S S ISR I LE +G +LFYR+ R +T TE Sbjct: 6 SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + Q LQ+ +++PSG +RI + GQ + L YP Sbjct: 66 SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+LI ++ ID + D R+ + SS R T H A+P Y+ Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 EL++H + + K E N WL V +P E P L N+ S+M + Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237 Query: 237 LGSGIALLPDYIVKD 251 GI L PD+++ + Sbjct: 238 HSMGIVLFPDWLIGE 252 >gi|163758385|ref|ZP_02165473.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] gi|162284674|gb|EDQ34957.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] Length = 338 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 7/236 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V +GS + A +L LS + +S+++ LE +G +L R R ++LTE G + Sbjct: 7 LEIFARVVSAGSMSAAGRELGLSPAVVSKRLRRLEDRLGTRLMQRTTRQISLTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+++ G+ + ++ F+ PD+ + L Sbjct: 67 ERVVAILAGIEEAEAFVSRRSALARGVLKVSAPTSFGRMHIAPHINAFMQANPDLGVNLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + SSL+ RKL + AA Y++ P S ++L+ Sbjct: 127 LHDEFVDIVGDGYDLAIRIAE-LSDSSLVARKLAPVRRILVAAADYIRRNGNPDSFEDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H ++ + P +E + + + RP G LQ NS + + + G GIAL Sbjct: 186 RHVCLSPHNNDPWKLEGPSG-SMIHRPTGP-----LQTNSSEVVREAVIGGVGIAL 235 >gi|187479375|ref|YP_787400.1| LysR family transcriptional regulator [Bordetella avium 197N] gi|115423962|emb|CAJ50515.1| LysR-family transcriptional regulator [Bordetella avium 197N] Length = 309 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 8/292 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ AA L + +S +SR+IS LE +G++L R R L LT G Sbjct: 3 DLNDLFYFSQVVDQGGFSAAARVLDIPKSRLSRRISQLEERLGVRLLQRTTRRLRLTTAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + E+ + +++ ++PSG + ++ I L Q +L L EF+ +P++ Sbjct: 63 ERYLHYCREMTASARAAEDAMRQLQIEPSGPVVVSCPISLAQQVLAPLLPEFMSAWPEVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQ++ N+ +D+ + D A+R+R + + + L+ R+ A+P YL+ P + Sbjct: 123 IQMLATNRRVDLINEGVDLALRVRTKLDTDAELVVRQFGAASSTLVASPAYLQRHGTPET 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241 ++L +H ++F D + + + +R + PR+ C N ++ + GI Sbjct: 183 PEDLLQHMTLSFNDPQTEVVWSLHNGKGEERHVTVAPRLCC---NDFIVLAAAAANSRGI 239 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ALLP + LV ++ D +P V+ YP ++ F +F+ Sbjct: 240 ALLPTAATQTEMRRGELVPVLPDWRSPEGIVHCIYPSRRGMIPAVRVFLDFL 291 >gi|53719583|ref|YP_108569.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126440010|ref|YP_001058720.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|167816110|ref|ZP_02447790.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167902994|ref|ZP_02490199.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167911234|ref|ZP_02498325.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|217423812|ref|ZP_03455313.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|254197791|ref|ZP_04904213.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|52209997|emb|CAH35970.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126219503|gb|ABN83009.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|169654532|gb|EDS87225.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|217393670|gb|EEC33691.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 313 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + E ++ +PSGKL++ LGQ+ + + YP++Q+ L Sbjct: 66 LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ + + + S L+ ++L A+ Y++ P Q+L Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H + G + P D W + P GE ++ +VN ++ G GI Sbjct: 186 AGH--VCLGMVAPGLYWD-EW--KLVGPQGEQSVTLAPPPFRVNVAEALATGIREGMGIG 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y N + VR+M + + +Y Y A R ++ K R W Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|296388675|ref|ZP_06878150.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 323 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 9/245 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V GSFT AA+ L S +++SRQ++GLE + +L R+ R + +TE G + + Sbjct: 7 IRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++++S SG+LR+ +LG L L ++L +PD+ + L Sbjct: 67 EHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + + D I L + + S+L+ R L + AAP YL P + ++L Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H + P C + W+ +R GE + L+VN + G G+ LL Sbjct: 187 RHRCLNVA--APSCPQ--GWVFVGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240 Query: 245 PDYIV 249 P ++ Sbjct: 241 PGFVA 245 >gi|270261913|ref|ZP_06190185.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043789|gb|EFA16881.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 296 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 11/249 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+ F +AR SFT AA ++ ++ S++S I LE ++G +L R R + TE+G Sbjct: 2 DDLKAFLCIARLQSFTKAAAEIGVTPSALSHTIKTLEEKLGYRLLTRTTRSVAPTEEGEM 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R ++ ++ +L P+G +R+ + D Q L++ L +FL YP+I I+ Sbjct: 62 LMRSLGPLFEQINDELEKLGAMRNTPTGTIRLTGSDDSVQYLIRPVLADFLKKYPEINIE 121 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + A P Y + P + + Sbjct: 122 IGIDYGFTNIVQERFDAGIRLGESIDKDMVAVRISRDWRLCVVATPSYFQQYSAPQTPND 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSG 240 L +HN I I + + W + G+ + S NS L + + G G Sbjct: 182 LIRHNCINIRHSITSGI--YAW----EFEKGKHQFSVKVKGQFTANSTLHQLDAVLAGIG 235 Query: 241 IALLPDYIV 249 IA LPDY+V Sbjct: 236 IAYLPDYLV 244 >gi|270265239|ref|ZP_06193501.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270040873|gb|EFA13975.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 297 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 119/243 (48%), Gaps = 5/243 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A SF A E+L +S S++ + ++ LE +G++LF R R + LT++G+ Sbjct: 7 LLAFVRAAELRSFVAAGERLGVSASAVGKSVARLEESLGVRLFNRSTRRINLTDEGALFF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E + E+ S P GKLR++ +G +L L +F LYP++++ + Sbjct: 67 ERCQRIVSEIENAEAEMARISDAPRGKLRVSMPA-IGYRMLVPLLADFSALYPEVELDVD 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D A+R + S L+ R+L + AP YL+ P ++L Sbjct: 126 FNDRMVDLIAEGIDVAVR-SGELADSRLMARRLGPFRLILAGAPEYLQRRGVPQGPEDLL 184 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + + P + W L + P+ + L NS +++ G GIA LPD Sbjct: 185 EHACLRY--RYPGGQQLQEWRLFSDGEPVSQRIPVTLSCNSIEALIHATQEGLGIAYLPD 242 Query: 247 YIV 249 + + Sbjct: 243 FTL 245 >gi|220923367|ref|YP_002498669.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947974|gb|ACL58366.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 310 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/272 (22%), Positives = 129/272 (47%), Gaps = 7/272 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +GSF AA +L+LS+S++ + ++ LE +G +LF+R R L LTE G Sbjct: 11 LPAFVAAVEAGSFASAAAKLNLSRSAVGKAVTRLEGRLGTRLFHRTTRSLALTEDGQAFF 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L+ + L+ +G+LR++ + G+ + L + + +P +++ L Sbjct: 71 ESCRRALGDLQAARAMLESGRRDVAGRLRVSVPVLFGRRCIAPVLVQLVEAHPRLELDLN 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ +D+ D D +R P++ L+ R++ HM A+P YL P ++ +L Sbjct: 131 FNDRLVDVVEDGFDLVVR-NGPLRDWPGLMARRIARQHMRVCASPAYLAAHGIPHALTDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H + +G P + + + P S ++ + +I+ V G G+A LP Sbjct: 190 ARHRAVLYGR--PGRVRSWLFPQPGAAPAEVTPPSRMRFDDLGAILDAAVDGLGLAWLPC 247 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 +++ + L +++ + + F + +P+ Sbjct: 248 WLIGADVRAGRLATVLDHLPSHVFDSHALWPQ 279 >gi|170724490|ref|YP_001758516.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169809837|gb|ACA84421.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 297 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 11/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F +A + + + A + L LS S I+ LE +G +L +R R ++LTE+G Sbjct: 4 EDLRLFVRLAVTNNISKAGQDLGLSPPLASIHINRLEKTLGARLVHRTTRKVSLTEEGIT 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ +++ + + +P G L+I+ G+ L LK FL +P I + Sbjct: 64 FLPHAEEIILRVDEAMESVGKGLTRPQGVLKISAPSSFGRMHLMPALKGFLTQHPAISVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L + +D+ D IR ++SSSL+ RKL A+P Y++ +P S +E Sbjct: 124 IQLTDTMVDLVAGGFDVGIR-NSELKSSSLVARKLAVDRRIICASPEYIRENGQPSSPEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H I L E N ++ ++V+ ++ C+ G G+A+ Sbjct: 183 LRDHQCINLKGLEGWTFETLNGNVNINTK------GNVRVDQGEAVRDACINGMGVAMCA 236 Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 +I ++ +L++I++D + +++ YP + K++AF ++ Sbjct: 237 TWIAYEHLKRGDLIQILKDYPLIDDASIWAIYPSSKLLAPKIRAFIDY 284 >gi|94311164|ref|YP_584374.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93355016|gb|ABF09105.1| Transcriptional regulatory protein, LysR family, substrate-binding protein [Cupriavidus metallidurans CH34] Length = 286 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 23/296 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + WD L + R+GS++ A +L ++ ++ R+I LET +G + R LT Sbjct: 5 TISWDDLLTLSTLMRAGSYSACARELDITHATAIRRIRRLETALGKPVATRADGTFVLTA 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + E++ + SG +R+A T +G LL L P+ Sbjct: 65 AGRNALIAARQMEQSADRLLREIEGVASGVSGVVRVAATAAMGTCLLTPRLPALYAANPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +++L LDN+ ++ A A+RL +P Q +++ ++ T+H Y AP + Sbjct: 125 AEVRLELDNRVASLARRRAHIAVRLARP-QEDTVVAQRAGTVHFGLY-APAGMTVATALA 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 S L L+ G +P + W +++R Q NS L++ Q G G+ Sbjct: 183 SDTPL--CGLLDEGFTLP----EVEWPKSLNRRF------AFQSNSLLAVSQAVRTGLGV 230 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 ALLP Y+ +P L + +DV + ++ YP + + FR I DW Sbjct: 231 ALLPHYLAAGDPGLT-LAQDVPEVTREIWLAYPAEFRGASR---FRPVI-----DW 277 >gi|326794982|ref|YP_004312802.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326545746|gb|ADZ90966.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 299 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 8/271 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F VA +GSF AAE +S S+S++IS LE +G +L +R R L+LTE G L+ Sbjct: 6 LTLFAYVADTGSFNKAAEVAGISTPSLSKKISKLEKSLGAQLIHRTTRRLSLTEAGESLY 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + +S SG ++++ G+ LL + EF +PDI + + Sbjct: 66 VHAKNIEEQVNDAVASVSNASRGLSGTIKMSVPTISGELLLSEAIAEFCHQHPDISVDMR 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ++ + D AIR ++ SSLI + L+ + +P Y+ EP + +L Sbjct: 126 LDNGFANLIEEGLDLAIR-TGILEDSSLIAKPLIQSNWIVCCSPDYINKYGEPETPDDLK 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 HN + + + ++W T RIS + N+ ++ + + G GI +P Sbjct: 185 THNCLAY---TYQAKGSYDWRFTHQGEELTVRISGSIATNNAQALRKAALAGFGIVYVPR 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 V ++ L I+ D VY YP Sbjct: 242 CCVYEDLVAGKLTAILTDYQPRQLGVYAIYP 272 >gi|162149248|ref|YP_001603709.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209545016|ref|YP_002277245.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787825|emb|CAP57423.1| putative transcriptional regulator LysR [Gluconacetobacter diazotrophicus PAl 5] gi|209532693|gb|ACI52630.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 301 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 71/301 (23%), Positives = 144/301 (47%), Gaps = 20/301 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +++VF V GSF+ AA QL ++ S++S+ I+ LE+ +G++L R R L+L+ +G Sbjct: 7 EMQVFVRVVECGSFSEAARQLFMTPSTVSKLIARLESRLGVRLIERSTRRLSLSAEGQLY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +L+ + + + SG +R++ ++ G L+ L F P++ + L Sbjct: 67 YERGQALLAELDDMEQTVSQGMRHTSGIVRVSASVAFGTLGLEPLLPAFWSACPNVIVDL 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ ID+ +D D A R+ K + S+L +++ + A+P YL P ++ +L Sbjct: 127 SLSDEIIDLFLDRTDIAFRVGK-LADSTLTTQRIGSARRKIVASPAYLARHGTPDTVDDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +HN + F +F A V R + L N+ ++ + V G G Sbjct: 186 ARHNCLGF---------NFRRAAPVWPLREGGRIVDRMVHGTLLANNGETVRRLAVAGMG 236 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +A L +Y V+++ R++E + ++ Y + +++ F +F+ K R Sbjct: 237 LARLGNYHVREDIAAGRLVEVLAQAGIHDEEDIHAIYSGTQRMPQRMRVFLDFVIPKLRA 296 Query: 297 W 297 + Sbjct: 297 F 297 >gi|186470480|ref|YP_001861798.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196789|gb|ACC74752.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 313 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 16/281 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L ++A G++T AA +L +S++++S++IS LE GI L R R + LTE G Sbjct: 10 WTHLHWLTMLAEQGTYTAAAARLGVSKAAMSQRISELERAAGISLVQRTTRSVRLTEAGQ 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T Y ++ + +++E S P G++R+ + + L L EFL P +++ Sbjct: 70 QLVDATRGQYAQIAASFAQVRELSGVPRGQVRVTAPVAFARQQLVPKLPEFLSANPAVRV 129 Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 QL + ++ + ++ + D AIR +P + + KL A YL+ P S Sbjct: 130 QLEVSDRLVSLATEGFDLAIRHTAEP--PDTHVAWKLCDTRSVIVATRAYLRKRGMPKSP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 EL H+ + + P+ M + W RP+ P N+ ++ + Sbjct: 188 DELASHDCLFY----PRSMGEPMWSFERKSARKNTARPVALPVKGPFCANNSETLRDAAL 243 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277 GIAL+PD+ + +++ V+ P + V + E L Sbjct: 244 ESLGIALVPDFTAQAAVQAGKLV--VVLPDWRVTGAFAEQL 282 >gi|107028439|ref|YP_625534.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686434|ref|YP_839681.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|254250479|ref|ZP_04943798.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|105897603|gb|ABF80561.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652149|gb|ABK12788.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|124879613|gb|EAY66969.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 301 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 27/300 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F VA SFT AAE L + + +S + LE ++G+ L +R R + LTE G Sbjct: 5 DALLIFARVAEMASFTRAAESLGIQKGRVSTVVRTLERDMGVALLHRTTRRVQLTEDGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ +++ Q G+LR+ +L ++++ L + + +PD++++ Sbjct: 65 FYARATDLLAEVQELQSMFSGRGASLRGRLRVDMPTELARSVVVPALPQLMAAHPDLELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC IRL PI +LI R L + M A+P YL P ++ + Sbjct: 125 LSSTDRRVDLVREGFDCVIRL-GPIADETLIARPLGRLRMTNAASPDYLARHGVPRTLAD 183 Query: 186 LDK------HNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 L H +T G P + + WL P S +QVNS + Sbjct: 184 LHSQGHRMIHYTLTLGARHPGWEYPDGDGYAWL---------PLPSAMQVNSVQTYHAAG 234 Query: 236 VLG-----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G +G + L +I ++ LV ++ D+ + +++AF ++I Sbjct: 235 LAGIGLIQAGYSALAHHI--ESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292 >gi|319796367|ref|YP_004158007.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598830|gb|ADU39896.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 308 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 135/295 (45%), Gaps = 15/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F A SGSF+ AA +L L+ +++S+ ++ LE +G++LF R R LTLTE G + Sbjct: 5 NHLESFVQSAESGSFSAAARRLGLTPAAVSKNVARLEARLGVRLFQRSTRRLTLTEGGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ L + +P+G L+++ G+ + + +FL YP I Sbjct: 65 FLAQIGGPLATLQEAVAGLAKDDGQPAGTLKVSMGQAFGREHVLPMMGDFLARYPSILPD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 DN+ +D+ + D AI + S ++ R+L IH+ A A+P Y+ P + Sbjct: 125 WHFDNQQVDLVGEGFDAAIGGGIDL-SPGVVARELSRIHVVAVASPAYMAGRAPPAQPAD 183 Query: 186 LDKHNLI-----TFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L + + G L ++ ATV+ P PR N +I +LG Sbjct: 184 LAGFDALLRRSSPTGRLRSWTLQHSGGQQATVELP--RPRAI---FNDPEAIAHAALLGL 238 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A+LP V+ + LVR++ + + V+ YP K + F +F+ Sbjct: 239 GVAMLPMPFVERGLRSGELVRLLPEWHFDAGVVWLYYPSKKLLPPKTRVFVDFVL 293 >gi|292489435|ref|YP_003532322.1| HTH-type transcriptional regulator YcaN [Erwinia amylovora CFBP1430] gi|292898348|ref|YP_003537717.1| LysR family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291198196|emb|CBJ45302.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291554869|emb|CBA22768.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia amylovora CFBP1430] Length = 293 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 19/287 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F +VA GSFT AA + L +SS+S++I+ LE +G++L R R L LT G + Sbjct: 9 MALFALVAGCGSFTAAATRAGLPKSSVSQRINQLEQTLGLRLINRTTRQLNLTFAGERYL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ E + ++ PSG+LRI + + LL F YPD+ +++ Sbjct: 69 VHCQEIVQASERAGLAIERLRDNPSGRLRITSPAGIAATLLARVNTAFQQKYPDVTLEVS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ D+ D A+R KP Q SSLI R++ A+P YL + ++L Sbjct: 129 VSDEMCDLVQSRFDVALRTGKP-QDSSLIGRRIGDGQRRLVASPGYLADYPPLAHPRQLS 187 Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIA 242 +H I L+ + E + WL + + L + C L S GI Sbjct: 188 EHRCIAHRAWNEWLLQRNDEYYRWL-----------LPPTHMTDNLLYARECALSSGGIT 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LLP ++ + LV+++ ++ YP N+ L F +F Sbjct: 237 LLPRFLCCE--KLVQVLPAWEVEGNELWLVYPSRKLNSPALSRFVDF 281 >gi|260555397|ref|ZP_05827618.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260411939|gb|EEX05236.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 301 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 136/261 (52%), Gaps = 14/261 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A +++ S++S+ IS LE +G++L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTNEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + L+ + + + + P G++RI T+ + L + F YP+I+++ Sbjct: 71 YELGIQILNDLDELEQAVTANHI-PKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEA 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ D AIR P++SS+L+ R L + + +P Y++ P EL Sbjct: 130 HLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTYKQYVCSPVYIEKYGRPEHPDEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H L+ + ++ WL AT + + ++ L+VN +I+Q + G+GIA Sbjct: 189 HEHQLLD----VSYQRQNKTWLFKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQ 242 Query: 244 LPDYIVKD---NPNLVRIMED 261 L ++ +++ LV+I+ED Sbjct: 243 LNEFQIRNALQQKQLVKILED 263 >gi|253997383|ref|YP_003049447.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253984062|gb|ACT48920.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8] Length = 301 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 6/248 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +D + + F V F+ AA +L +S+SS+S+ ++ LE +G L R R L+LTE Sbjct: 2 YDLNLMITFAHVVNEQGFSAAARKLGVSRSSVSKAVAKLEHNLGASLLNRSTRHLSLTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + + + Q ++ S +P G L++A ++ G + + +FL YP++ Sbjct: 62 GASFFDYCTRISDEADQAQKMIESLSAQPRGVLKVAASVAFGTLHIAPAVGDFLHRYPEL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + + ++ +D++ + D I + R P + +L+ +KL I A P Y K P Sbjct: 122 DIDMTITDRVVDLAEEGYDLVICVTRNPPE--ALVAKKLAPIRRRLCATPDYFKQFGIPQ 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 S Q L +HN + D I + P L++N ++ Q + G G+ Sbjct: 180 SPQALVQHNCL---DYIHSGDSGLWRFEVAGKETLVPVSGRLRINDDEALSQVVLGGFGL 236 Query: 242 ALLPDYIV 249 ALLP +I+ Sbjct: 237 ALLPTFII 244 >gi|163733908|ref|ZP_02141350.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] gi|161393019|gb|EDQ17346.1| transcriptional regulator, LysR family, putative [Roseobacter litoralis Och 149] Length = 293 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 16/302 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +WD+++ + VAR G+ + AAE L + +++ R + LE +G+KLF RHARG T T Sbjct: 1 MMNNWDEIKTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEGRLGVKLFQRHARGYTAT 60 Query: 61 EQGSKLHRV---TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 E G L RV T + +H+L +I+ + + V SG L + + IDL ++ L F Sbjct: 61 EAGQDLLRVAQATDDQFHQL-AGRIKGRGNEV--SGDLVVTSLIDLSSRMVP-VLVAFQN 116 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 YPD+ ++ + + + A AIR P Q +++Q + + +A Y+ Sbjct: 117 AYPDVVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQ-EFRHHRVALFATKDYIAE 175 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P ++ H + D WL P S +S + + Sbjct: 176 YGRPNGVKSFGDHRFVAH-DAENNRAPFEQWLRQ-----NVPASSIRFRSSDTRAQREAI 229 Query: 237 L-GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L G+GI LP + + P LV + + S ++ L T K++ F +F+ A+ Sbjct: 230 LEGAGIGFLPAFEARSRPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLSFVKDAAQ 289 Query: 296 DW 297 +W Sbjct: 290 EW 291 >gi|307316823|ref|ZP_07596265.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306897445|gb|EFN28189.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 301 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +R+F V SG F AA+ LH+S S++R ++ LE +G +L R R L LT G Sbjct: 4 WQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTAAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + S P+G L + G+ + + +FL YP +Q+ Sbjct: 64 GYVADCRRILGEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDHYPAMQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + I ++ ++ + D AIR+ + +S L+ R++ ++ +P Y +P S Q Sbjct: 124 KTIFVDRVTNLVDEGLDVAIRIAS-LPASGLVARRIGSVRQVLCGSPDYFARFGDPGSPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +H +I L F + PI PR+ C N+ +++ V G G++ Sbjct: 183 ELARHRIIGREGLFGHSEWLFGRDNNIRVPI-SPRLIC---NTNDAVLAAAVAGWGLSRF 238 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y V + + R ++ D ++ + E + +++AF +F Sbjct: 239 QSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDF 286 >gi|239820854|ref|YP_002948039.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] gi|239805707|gb|ACS22773.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 293 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 10/246 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L F +VA +G A+ S++++SR+I+ LE ++G++L R ARGL LTE Sbjct: 1 MDLNALTDFALVAANGGLGKASRASGRSKATLSRRIADLEEQLGVRLIERSARGLKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T H++ +E P G+LRIA+ + Q + EF YP++ Sbjct: 61 GQMLMDRTEGPMHEVADAMTSAREGLSVPRGRLRIASPVLFSQLAMGRIGAEFCAAYPEV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ D++ +D+ + D AIR+ P SSL+ R + AAP + Sbjct: 121 SCEVVADDRLVDLVEEQFDAAIRI-NPSPDSSLVGRCFAKDRLVVVAAPS--------VP 171 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + K + ++ + NW R + EP + L+++S+L I V G+G A Sbjct: 172 MPKRGKGKVSAVPGVVATTFQGGNWTLDDGRLVVEP-VPRLRLSSFLMIRDAAVAGAGAA 230 Query: 243 LLPDYI 248 L+P I Sbjct: 231 LIPQSI 236 >gi|118591289|ref|ZP_01548687.1| LysR family transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118435961|gb|EAV42604.1| LysR family transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 301 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 9/294 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D L+ +V GS AA L L S++SR +S +E E+G +LF R R L+LTE Sbjct: 1 MDLQALKTILLVRDLGSLAAAARALDLDASNVSRTVSSVERELGQRLFQRSTRKLSLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++E ++ S +P G LR+ ++ + L +F LYPDI Sbjct: 61 GEAYLQRVAPLVEEIEAANEDIAARSRQPRGILRMTASVAFVLEGIVPLLPKFQELYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L + ++D+ + D AIRL LI KL+ A+P YL P + Sbjct: 121 SIELFPSDSNLDLLAEGLDLAIRL-AAAPKGDLISTKLLQTRYRVVASPGYLSGEGHPEA 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L N + F +P + + D P + S L++ + LG G A Sbjct: 180 PGDLSVRNCLCFA--LPDFRNAWRFRLGDDAPFDVDVSGRTTIASALALREAARLGLGPA 237 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG-KLKAFRNFIFLKAR 295 LL D+++ ++ + E + F Y C P + L R ++ LK R Sbjct: 238 LLADWLIGND-----LKEGKLVDLFPAYACAPANFETAAWILYPSRAYLPLKVR 286 >gi|160876916|ref|YP_001556232.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|160862438|gb|ABX50972.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|315269120|gb|ADT95973.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 300 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 141/297 (47%), Gaps = 17/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAE L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 IRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + + G +RIAT I LGQ+ L + F+ ++P + IQL+ Sbjct: 67 QFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQLV 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI R+L+TI AAP YL + PL ++ + Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMTIDAVICAAPSYL-DSNTPL-VEPI 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 D L+ LI + NW + +++ L+ N ++ + G GI LP Sbjct: 183 D---LLAHNCLIHSAQQ--NWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + L ++ + TP T++ Y L + + R FI A+ W+ Sbjct: 238 CDLANQYLASGQLKEVLPNFTTPGQTLWAVY---LSRSYQQNLVRAFIDFTAQQWQL 291 >gi|15597157|ref|NP_250651.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9947959|gb|AAG05349.1|AE004622_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 311 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 142/301 (47%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L F V G F A + + +S +SR+I+ LE + ++L +R R L LT Sbjct: 1 MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + E + E SV+P G+LR++ + + + L L FL +P Sbjct: 61 EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +Q++++L N+ +D+ + D A+R+R+ + +L+ R+L AAP + R Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRR- 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232 L E D +L G + D AT+ P G EPR L V+ ++ Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230 Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V G G+ LLP+ Y ++ + +LVRI+ P T+ Y L + ++ A R Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287 Query: 290 I 290 I Sbjct: 288 I 288 >gi|327193925|gb|EGE60800.1| transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 297 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 131/294 (44%), Gaps = 9/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + V V GS + A+ L +++SR+IS LE + KL R R +TLTE G Sbjct: 5 DAMSVLLAVVEHGSLSAASRHLRSPLATVSRKISELEAHLHAKLLQRSNRKITLTEAGRS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ ++E + P G+L + I G+ + + +FL YP+I ++ Sbjct: 65 YVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPEIDLR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ ++ D+ D A+R+ + S+LI +L I YA+P YL P + Sbjct: 125 LMLGDRLSNLVEDHIDLALRIGT-LVDSNLIATRLGAIRRTVYASPDYLARNAPPRQPGD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+ ITF ++ +W + R + P S L VN+ + + V G GI + Sbjct: 184 LSAHDCITFENM----ASIRSWTFSDGKRDLAVPIRSRLAVNTAEAAVDAAVAGLGITRV 239 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y LV ++ D P V+ YP KL+A +F + R Sbjct: 240 LSYQAARAETAGLLVPLLSDFEPPPAPVHLVYPSQGLVPLKLRALLDFATPRLR 293 >gi|293394768|ref|ZP_06639059.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422719|gb|EFE95957.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 300 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 16/294 (5%) Query: 1 MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M+ D D +R+F V SFT AA+ L L +S+++ I LE + ++L R R ++ Sbjct: 1 MAMDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLKVRLLQRTTRHVSP 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 T G ++ + +E E+ + KP G LRI L ++ L L +FL Y Sbjct: 61 TLDGEAYYQRCLRILADIEDA--EMAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLARY 118 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PDI++ + ++ ID + DC +R+ K ++ S ++ R + + A+P YL+ Sbjct: 119 PDIELFMSEGDRLIDPLREGVDCVVRVGK-LKDSDMVARHIGALSETTCASPDYLQRFGV 177 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYC 235 P S++ L H +I F + +L VD G+PR + L V+S S++ Sbjct: 178 PDSLEALANHRMIGFRSSATGSLMPLEFL--VD---GKPRSITLPTTLTVSSGDSMVAAA 232 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LG GI +P Y ++ + +L+ ++ V YP + + +++ F Sbjct: 233 RLGLGIIQVPHYHLQQDLARGSLLPLLAQYPPTPMPVSLLYPRNRQLSPRVRVF 286 >gi|254297865|ref|ZP_04965318.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157807869|gb|EDO85039.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] Length = 307 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 134/297 (45%), Gaps = 23/297 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 1 MRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +E + E ++ +PSGKL++ LGQ+ + + YP++Q+ L Sbjct: 61 QRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDLT 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D ++ + + + S L+ ++L A+ Y++ P Q+L Sbjct: 121 LAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDLA 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIAL 243 H + G + P D W + P GE ++ +VN ++ G GI + Sbjct: 181 GH--VCLGMVAPGLYWD-EW--KLVGPQGEQSVTLAPPPFRVNVAEALATGIREGMGIGV 235 Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y N + VR+M + + +Y Y A R ++ K R W Sbjct: 236 LPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 281 >gi|49084268|gb|AAT51187.1| PA2220 [synthetic construct] Length = 307 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 124/272 (45%), Gaps = 17/272 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR G+FT AA QL ++QS++S+ ISGLE + I+L R R ++ T G +L Sbjct: 12 FVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAI 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E EL KPSG +RI + + LL L LL YPDI+++ ++ Sbjct: 72 GNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDINY 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI D D +RL I + + M AAP Y +P S ++L HN Sbjct: 132 GFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSPRDLVDHN 191 Query: 191 LITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 I G L + W DR + L N+ +I+ + G GIA L Sbjct: 192 CINMRMQSGGGL-------YAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIARL 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 P+ + L+R++E+ P F Y+ Y Sbjct: 245 PEEEFAPHIEEGRLLRVLEN-WCPLFPGYYLY 275 >gi|83749082|ref|ZP_00946088.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|83724272|gb|EAP71444.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] Length = 330 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 140/302 (46%), Gaps = 32/302 (10%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W+ F V +GSFT AAE L + +S+ S +S LE +G++L R R L LTE Sbjct: 25 TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 84 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 GS + + ++ +L + +S SG LRIA ++G L + + L +P+ Sbjct: 85 AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 144 Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +QIQ+ + + D ++ Y + + + + SSL+ R++V I YAAP L R P Sbjct: 145 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAP 203 Query: 181 LSIQELDKHNLITFGDLIP-KCM---EDFNW---------LATVDRPIGEPRISCLQVNS 227 L+ T DL C+ +D +W A ++ PI +PR+ L N+ Sbjct: 204 LA----------TPADLAGWPCLSGPDDASWGFRPAGAPAAAPLEVPI-QPRLQTL--NA 250 Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + + + V G G+A + + + LVR++ D VY P K++ Sbjct: 251 EMRV-RAAVRGLGVARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMPARKLVPRKVR 309 Query: 285 AF 286 F Sbjct: 310 VF 311 >gi|330878634|gb|EGH12783.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +ET G +L +R R L LT G Sbjct: 8 RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L +L +K +L YP + L++ Sbjct: 68 RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + ++I R L A+P YL P S QEL Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F P+ P L N + +++ V G+GI L P + Sbjct: 187 HNCLTY-SYFGKSLWEFT---RQQSPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ ++ D + ++ Y + L+ +F+ Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 287 >gi|307543958|ref|YP_003896437.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307215982|emb|CBV41252.1| putative transcriptional regulator [Halomonas elongata DSM 2581] Length = 302 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 102/190 (53%), Gaps = 1/190 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V +GSF+ A QL + S++SR ++ LE +G +L R R L L++ G ++ Sbjct: 12 EMAVFVKVVEAGSFSEAGRQLASTPSAVSRSVARLEKALGTRLLQRTTRKLRLSDSGKEV 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + + S +P G +R++ +G+ ++ ++ EFL LYP++ +++ Sbjct: 72 YERSRDIVNAAQAVMEVSGRFSHEPQGLVRLSVPKAVGRFVIHPHIPEFLALYPEVNLEM 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ ID+ D D AIR+ L+ R+L++I PHYL P ++L Sbjct: 132 RLDDRYIDLIDDQIDVAIRITDQ-PPPGLMGRRLLSIDHLLCTTPHYLAEHGTPAHPRDL 190 Query: 187 DKHNLITFGD 196 H+ I G+ Sbjct: 191 KHHSCIYLGE 200 >gi|229589237|ref|YP_002871356.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361103|emb|CAY47966.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 316 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 10/251 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F V +GSF+ AA + L+ S+++R+I LE+ VG +LF R + T G Sbjct: 8 DQLGLFLDVLETGSFSAAARRHPLTPSAVARRIDSLESSVGSRLFQRSTHAVVPTPAGLA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L+ + E S P G +R+ G+ L + +FL +YP + + Sbjct: 68 FAERARRIVSELQLARAEAVSLSHAPEGLIRVDAPAAFGRRHLAPVIADFLNVYPGLDVH 127 Query: 126 LILDNKDIDIS---MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L + +D+ + D +R I + LI L +I A A+P YLKN PL Sbjct: 128 LHLIDSFVDMQGAHLGKVDLVLRAGH-IVDTRLIATPLASIVRIACASPAYLKNRGTPLH 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +EL +H+ + + L P F W +D R P+ + N+ +++ + G G Sbjct: 187 PRELGEHDGLDWDGLAPM----FAWRFELDGRRATYRPQRIRMSANNAEALLSGALAGLG 242 Query: 241 IALLPDYIVKD 251 IA LP ++ + Sbjct: 243 IAHLPTWLASE 253 >gi|116253521|ref|YP_769359.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258169|emb|CAK09270.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 302 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 17/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +RVF V SFT AAE L +S+++ + LE +G++L R R ++ T G Sbjct: 4 FDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +E + E + KP G LR+ L ++ + +L FL YPDI+ Sbjct: 64 AYYQRCLSILADIE--EAEGAFAGAKPKGMLRVDVHGTLARHFVLPSLPSFLETYPDIEF 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R+ P Q S ++ R++ + A+P Y+ +P + Sbjct: 122 YMSEGDRLVDLVREGIDCVLRVGTP-QDSDMVARRVAMLDEVTLASPAYIARHGKPEHPE 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H ++ F G L+P +A + P + + VN+ S + LG Sbjct: 181 RLAGHRMVGFRSSGTGSLLPLEFIVDGAVANIGIP------ATVAVNAAESYISAARLGL 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +P Y + + LV+++ D V YP + + +++ F +++ Sbjct: 235 GMIQIPRYHAEKDLAEGTLVQVLPDFPLTQTPVSLLYPRNRQLSPRVRVFIDWL 288 >gi|325522137|gb|EGD00794.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 321 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/299 (23%), Positives = 136/299 (45%), Gaps = 13/299 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF +A +G+FT ++L ++ + +SR I+ LE +GI+L R R + LTE G Sbjct: 4 FQSMQVFVTLADAGTFTETGKRLDITTAQVSRMIATLENHLGIRLLNRTTRSMCLTEAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ ++ ++ E + + + P G+LR + + + + + F YPD+ + Sbjct: 64 RYLARARDITLAVDASEREARGAQLHPYGRLRAHCSASIASHFVIPLVARFQARYPDVSV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + D+ D A+ + SS + + I AAP Y+ P +++ Sbjct: 124 DLTLAPQVPDLIRGSYDVAVIALPSLPSSDQVAIDVGRIDSVLCAAPAYVARHGMPDTLR 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT----VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + L+ + W+ T + EP + + S+ G+G Sbjct: 184 ALARHRCV---QLVAPAYLEREWVLTNGLETETLAFEP---AMTADVAASLAVAVREGAG 237 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 I LLP ++V D+ L+R++ D + V+ +P K +A+ +F+ RD Sbjct: 238 IGLLPRFVVDDDLRSGALLRVLPDYRSEEIGVFLVHPSRRHVDAKTRAWVDFMKTALRD 296 >gi|325168392|ref|YP_004280182.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064115|gb|ADY67804.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 302 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 12/290 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ +R F VAR+ S T A +L +SQS++SR+I LE +G+ LF RH G LT++ Sbjct: 1 MDWNDVRYFLTVARTASLTQTASELKVSQSTVSRRIVELEENLGVALFQRHQTGYFLTDE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ R V + + P G +R+AT+ +L +L+ L F YP I Sbjct: 61 GREVLRHAETVEDSILALERGAAGLEKDPQGVVRLATSENLATDLIIPALPAFRERYPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP-L 181 +++I ++ AD A+R+ +P + +L+ R + + Y + YL R P + Sbjct: 121 CLEIITSTVAAELGRREADIALRVVRPTR-GNLMVRSVGHMTYSVYGSRDYLD--RHPYV 177 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSG 240 + L + IT+ D M WL P + V S L S + G G Sbjct: 178 EGEPLGGRHFITWDD-SHAFMPAAAWLKR-----EHPGCKIVLVTSSLPSQIAAVRAGLG 231 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A++PD++ + +L+ ++ S V+ L + +++A +F+ Sbjct: 232 LAVIPDFLAVGD-DLLPVIPSERMFSNKVWLVTHADLVASARVRAVGDFL 280 >gi|315123380|ref|YP_004065386.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315017140|gb|ADT70477.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 312 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 133/272 (48%), Gaps = 6/272 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L + V GSF AAE ++ +S IS+QIS LE E+G++L R R +LT G+++ Sbjct: 6 RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ L T + +P G L++ + +G+ LQ + +F +P ++++L Sbjct: 66 IKKAGELRSLLGETVRMAENYHQEPRGVLKVTASTLIGRRYLQPVINDFQKRFPQVEVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +DI + D A R+ +P + SSLI RK+ + AAP +++ P++I +L Sbjct: 126 RLDDRLVDIVSEGFDLAFRVGEP-KDSSLIARKIARNRLLLLAAPAFIETYGMPITITDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + ++ + E N+ + S + N ++ + G+ L P Sbjct: 185 AQLPAASYASNSLRV-EGINYYNHTGEHCEQKIKSVFRANDAEVLLMKTLSGTTYFLAPA 243 Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYP 274 +I+ + LV ++ DV + +Y YP Sbjct: 244 FILDKEVIDGQLVPLLTDVKLMEHSAMYAVYP 275 >gi|238760469|ref|ZP_04621606.1| Glycine cleavage system transcriptional activator [Yersinia aldovae ATCC 35236] gi|238701311|gb|EEP93891.1| Glycine cleavage system transcriptional activator [Yersinia aldovae ATCC 35236] Length = 305 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 25/299 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AAE+L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSSFNAAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + S L +L + AP L Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWSGLRTERLYAEFLLPVCAPSLL----------- 174 Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238 + +H L DL + +W+A R +G P+I+ Q + ++Q V G Sbjct: 175 MGEHGLKVPADLANHTLLHDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 233 Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIAL+ + + + R++ DV+ Y ++ GK+ AFR +I KA Sbjct: 234 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292 >gi|153837397|ref|ZP_01990064.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|149749312|gb|EDM60091.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] Length = 295 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 15/279 (5%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S+IS++I LE ++G++L R R ++ TE Sbjct: 1 MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + + P+G L+I T+ +G L L +FL YPD Sbjct: 61 AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120 Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I +QL L + ++S+D R + + S S L YAAP YL+ Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYGA 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P +++EL KHN++ +G+ + ++ +R + ++ G Sbjct: 179 PQNVEELTKHNILIWGEKPAREIK-------TNRGKRVSLSGNFATTNPEALFHGAKRGM 231 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 GI + + ++KD+ LV I+ DV TVY YP+ Sbjct: 232 GILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPK 270 >gi|254472259|ref|ZP_05085659.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211958542|gb|EEA93742.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 321 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 141/286 (49%), Gaps = 9/286 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VAR+G+ + AA +L + +++SR+I LE + I LF RH G LTE G Sbjct: 24 WDDTKAFLAVARTGTLSAAAHRLSIGVATLSRKIDRLEETLKIPLFIRHQSGYQLTEDG- 82 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +E T ++ SGKLR+AT +L +L+ L EF YP++ I Sbjct: 83 RDLLAKAEALEAAATAFASGAKAQAGISGKLRLATAENLATHLILPALPEFRAHYPELHI 142 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +++ D +++ AD AIR+ KP +S ++ R+L T+ YA+ Y + + Sbjct: 143 EILTDVSSVNLHRRDADLAIRMVKP-ESGNVTLRRLGTLGFGLYASKDYALKRAKWTDQE 201 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 ++ + I++ + + + + W ++R + + R + +S + + G G+A+L Sbjct: 202 NYEQDDFISWCEALSHLV-NAKW---IERAL-KGRQPAVLTSSLATQVAATQAGLGLAVL 256 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ D LV + D+ +Y L ++ +++ +F+ Sbjct: 257 PHFLASD-AGLVCMNADIGVEQ-PIYLVMHSDLAHSPRMRVMADFL 300 >gi|167842349|ref|ZP_02469033.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 294 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 17/290 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VAR G+ + AA L + +++ R+++ LETE+ ++L R R LT Sbjct: 2 FDWENLRHFLAVARVGTLSGAARALGVDHATVGRRVTMLETELQVRLVERFPRHCALTGA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + S + + +Q + +G + ++ L N F YP I Sbjct: 62 GRRIFEIASAMEAGAFAIERTIQAERSQLAGAVVVSAPPVLVTNFFAKATTAFRERYPGI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L + + +S AD A+RL +P ++ +++ R++ + YAA Y P Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEAGNVV-RRIGAMEFALYAARRY------PY- 173 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +QE + + + D M WL + G+ I+C ++ S G+GI Sbjct: 174 LQEPARWEFVGYDDQFDD-MPQQRWLKKI---AGKRAIAC-RLGDITSQYAATRAGAGIG 228 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290 +LP ++ +LV + DV F ++ LK + ++A +FI Sbjct: 229 MLPRFLPAAGDDLVEL--DVDAEPFVRDIWLVVHRQLKASPPIRAVMDFI 276 >gi|293392435|ref|ZP_06636757.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291425089|gb|EFE98296.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 299 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 126/287 (43%), Gaps = 6/287 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VA SFT AA +L +SQS++S I GLE + ++L R R + LTE G Sbjct: 5 NFNDLLSFLMVAEERSFTRAAARLGVSQSALSHAIRGLEERLDLRLLTRTTRSVALTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L ++E + L + P+G +R+ ++L L FL YPDI Sbjct: 65 ERLVNAIGAHISEIEHQLVALGDMRATPAGNIRLTAGEHAIHSVLWPVLNPFLQRYPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I DN DI D IRL + + + + A +P Y +P + Sbjct: 125 VEVIADNSLTDIVSGRFDAGIRLGEQLAKDMVAIPIGPQLRFVAVGSPDYFAKHGQPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q L +H IT +P + W D R+ L +NS + G GIA Sbjct: 185 QALQRHRCITM--RLPTQGGLYAWEFEKDGRTVNVRVDGQLTINSLPQRIDAARSGLGIA 242 Query: 243 LLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P D + D N L+ +++D P Y YP ++T F Sbjct: 243 FVPEDTVAADIANGQLLNVLDDWCAPFPGYYLYYPSRRQHTTAFSLF 289 >gi|283788349|ref|YP_003368214.1| LysR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282951803|emb|CBG91513.1| putative LysR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 308 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 26/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F + G + AA QL++S S++S+ ++ +E +G L R R +TLT+ G L Sbjct: 10 LEFFVRIVDCGGLSEAASQLNVSPSAVSKSLAAMEESLGTTLIKRTTRSITLTDAGQYLF 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ H+ + P G+LRI +I G + L + ++ +PD+ + + Sbjct: 70 NRANKLLHEFDEALNTTSGYYHNPQGELRITCSIAFGYSRLVNLVDKYRSQFPDVNLYID 129 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L++ ++++ D A+R+ P Q+ ++ RKLV I A+P YL PL +L Sbjct: 130 LNDNFVNLNDTDFDIALRISTAPPQNYAM--RKLVPIRWAYCASPGYLAKKGMPLRRADL 187 Query: 187 DKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H+ + + L P K ++ + L + P + +Q NS L +++ + G+A L Sbjct: 188 VNHDCLIYPGLTPVIKVADEQDRLHQLKLP------APIQANSSLVLLKSVLEDQGVAYL 241 Query: 245 PDYIVKDNPNLVRIMEDVITP----------SFTVYFCYPEALKNTGKLKAFRNFI 290 P Y++ D+ I + ITP + +Y Y + + K+++F +F+ Sbjct: 242 PTYLIGDH-----IQKQEITPLMLDGMMSCETHALYALYFPSKYSNPKVRSFIDFL 292 >gi|153002195|ref|YP_001367876.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|151366813|gb|ABS09813.1| transcriptional regulator, LysR family [Shewanella baltica OS185] Length = 300 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 17/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAE L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 IRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + + G +RIAT I LGQ+ L + F+ ++P + IQL+ Sbjct: 67 QFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQLV 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI R+L+TI AAP YL + PL ++ + Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMTIDAVICAAPSYL-DSNTPL-VEPI 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 D L+ LI + NW + +++ L+ N ++ + G GI LP Sbjct: 183 D---LLAHNCLIHSAQQ--NWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + L ++ D TP T+ Y L + + R FI A+ W+ Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLCAVY---LSRSYQQNLVRAFIDFTAQQWQL 291 >gi|187919672|ref|YP_001888703.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718110|gb|ACD19333.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 297 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 142/302 (47%), Gaps = 35/302 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VAR SFT AA+ L L+Q ++SRQI LE LF RHA+GLTLT +G Sbjct: 8 NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + ++E +I L+ + + L++ T + + + F YP++ +Q Sbjct: 68 LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQAEYPELHVQ 122 Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + D+D ++ D AI +Q+ L + +L + AP LK+ +P Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGAGVQAVPLFEERLTPV-----CAPDLLKD--KP 175 Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----------PRISCLQVNSY 228 L+ + +L +H L+ + D+ WLA V P L + + Sbjct: 176 LAEVADLARHTLLH----PTRDHRDWKMWLAKVTEIDAANAAAIDAEHGPSFDTLDMATN 231 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 ++ + V S +AL+ + + LVR + V+ + YF YP+++ + KL FR+ Sbjct: 232 AALQGFGVAISDLALIDEDVAAK--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLNLFRD 289 Query: 289 FI 290 +I Sbjct: 290 WI 291 >gi|238752486|ref|ZP_04613961.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia rohdei ATCC 43380] gi|238709249|gb|EEQ01492.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia rohdei ATCC 43380] Length = 297 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 12/286 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68 VF + GS AA+ L +S++ ++R ++ +E G +L +R R L+LT G + L R Sbjct: 9 VFVAIVERGSMIGAADALEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLER 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + IE QE+ + G LRI+ + LGQ+ L + E+L YP + + L + Sbjct: 69 CRRMLEFAQDMDLIEGQEND-ELRGLLRISCSQSLGQSALVIAVTEYLRRYPQVAVDLQM 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +N+ +++ + D A+R+ + +LI R L T H AAP YL P + +L Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLATCHSVVCAAPAYLLAKGTPKTPSDLAV 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +T+ K + F+ +G L N + ++ + G+GI L P Y Sbjct: 187 HNCLTY-SYFGKSLWHFDQQGVQSSVAVG----GNLSANESVVLLSGALEGAGITLQPSY 241 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L++++ D + +Y Y + G L+A +++ Sbjct: 242 SAAPHIARGELIKLLPDYQPQAMGIYGIYTSRRQMPGTLRAMLDYL 287 >gi|238026362|ref|YP_002910593.1| putative LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237875556|gb|ACR27889.1| Putative LysR-family transcriptional regulator [Burkholderia glumae BGR1] Length = 324 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 129/292 (44%), Gaps = 22/292 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA SF AA +L +S + ++R I+ LET + +L +R R L+LTE G++ Sbjct: 7 MRVFVCVAELQSFRQAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGTRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + + +P G LRIA + L L + F YP +++QL Sbjct: 67 DGCRALLEEFDHLEASVAHTIREPVGTLRIAVSGALSPQRLTPLVDGFRRQYPKVRVQLT 126 Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + ID + Y + R+ +L+ L A A+P Y++ EP EL Sbjct: 127 IADGPIDGLDTSYDAAIVAGRRIDDGPALVSHALAPDPFVAIASPAYIEQRGEPHRPDEL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCVLGS 239 +H IT +P F W R + R + L +N + + GS Sbjct: 187 ARHAAIT----LPLDTHGFAW-----RFVDAGRFAHLVTLQPSYTINDAWLVRAAVMAGS 237 Query: 240 GIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286 GIA+LP+ V D LVR++ D + P + YP + ++F Sbjct: 238 GIAILPESFVADAISRGELVRLLADYRIDDPDAQLAVVYPNRQFVPARTRSF 289 >gi|167616239|ref|ZP_02384874.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257142810|ref|ZP_05591072.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 305 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 12/297 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V ++GSFT AA L + ++++SR++ LE ++G++L +R R L LT Sbjct: 1 MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS + + +L+ + + P G LR+ G + L F YP Sbjct: 61 EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D++++++ + +D+ D D A+RL + S L+ R+L + YA+P YL P Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRL-GVLADSDLVARRLGSFATGVYASPSYLMRHGVP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCV- 236 EL H +T + + + + +P G + L V S +++ + Sbjct: 180 EHPGELGAHRALT----LHQARRAVGYAWPLRKPGGRAQYFALDPVIVASDPALIHDALC 235 Query: 237 LGSGIAL-LPDYIVKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ L + + D+ + R++ D P+ +P + K++AF +++ Sbjct: 236 AGEGLTLAMHQSMAADHEAGRVRRVLSDWSGPAQDFNALFPRGRVASPKVRAFVDYL 292 >gi|107024353|ref|YP_622680.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116688321|ref|YP_833944.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105894542|gb|ABF77707.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116646410|gb|ABK07051.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 325 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 125/249 (50%), Gaps = 8/249 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + + + L +F +GS + AA +L L +S++S++++ LE +G +L +R +R LT Sbjct: 21 LEMNLNDLYLFVQAVEAGSMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 80 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G++ + ++ + + + +P+G +RI +++ + Q++L L + +P Sbjct: 81 PVGAEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAIAHP 140 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 + +Q+ ++ +DI+ + D A+R P+ S+L+QR L + AAP YL Sbjct: 141 KLLLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 200 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P + +L +H+ + G P+ VD PR+ LQ + ++Q G Sbjct: 201 PDTPADLAQHDGLHPG---PQPWRLQRRGDAVDV---TPRLR-LQADESTLLLQAATAGL 253 Query: 240 GIALLPDYI 248 G+A LPD+I Sbjct: 254 GLACLPDWI 262 >gi|120613089|ref|YP_972767.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591553|gb|ABM34993.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 302 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 124/301 (41%), Gaps = 19/301 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRV AR GS T AA L ++ ++ S + LE +VG++LF R R L +T QG L Sbjct: 9 LRVLVEAARGGSLTAAARALDVTPAAASAMLKRLEAQVGVRLFERSTRALRITAQGGTLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L+ Q + G +R+A DL + LL L F+ +P +Q+ L Sbjct: 69 EYAERALELLDEGAGLAQSETGALRGTVRLAAPTDLSRVLLP-RLDRFMERHPGVQLALS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D+ D D A+R + S L+ R L A AAP YL P EL Sbjct: 128 ASDRLHDVRRDAVDLALRYSAELPDSQLVARALHHTRRIACAAPEYLARHGTPRHPSELA 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGSG 240 H I + + W T +R G P + V+ + + G G Sbjct: 188 THRCIA---MAIAGRREVRW--TFERAPGHPPETVGITLRADRSVDDGALAHAWALAGGG 242 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 I V+ D+ LV ++ + ++TVY P +++A F+ A +W Sbjct: 243 IVYKSRLDVQAHLDSGQLVELLPGWLGQAYTVYAVLPSQRFVPARVRALVEFL---AEEW 299 Query: 298 K 298 + Sbjct: 300 R 300 >gi|330982159|gb|EGH80262.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 306 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 4/246 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTVLIKQLEAHLGVQLLQRTTRQVSATPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL PL++Q Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLAQHGTPLNLQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL +H +I + ++A D E +C + VNS + C G G+ Sbjct: 183 ELAQHQVIEYFSTSTGKRYGLEFMA--DGMGVEHASACSIAVNSADGYVAGCEAGFGLIQ 240 Query: 244 LPDYIV 249 +P Y V Sbjct: 241 VPRYHV 246 >gi|237729614|ref|ZP_04560095.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226908220|gb|EEH94138.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 298 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 24/294 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V SGSFT AA +L +S + + I+ LE ++G +L R+ R +LT+ Sbjct: 2 DKLRGMETFVAVVESGSFTSAATRLEMSAVMVGKYINQLEAQLGTRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G V ++ + ++ + P+G LRI+ G ++ FL +P++ Sbjct: 62 GRVYFEEARRVLEQVSIAERSVERLRLAPAGTLRISAPTSFGACVISPLAAAFLQTWPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+L L N+ +D+ + D AIR+ I + ++ + L M A+P YL P + Sbjct: 122 RIELDLTNRMVDLVNEGVDLAIRI-GDIHQTDVVAKYLCPYRMAICASPDYLARHGTPRT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235 +L H C+ W L V + R + L+ N + Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWILPGVTGEVRWKRDAILRCNDGHGLRMAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V G+G+ L P+ ++ L+RI+E ++ + + L+ KL F Sbjct: 231 VAGAGLLLQPEVLLAQELATGKLIRILEGFTPQPRPIHLLWRQDLRPLPKLTRF 284 >gi|222110252|ref|YP_002552516.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221729696|gb|ACM32516.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 304 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 142/295 (48%), Gaps = 22/295 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F ++AR S + A +L +S ++ S++++ +E+ +G++L R R L LT +G+ Sbjct: 10 EMAFFSLLARWASLSATARELGISTAAASKRLAQMESRLGVQLVSRTTRRLHLTAEGNTY 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + +++ + + + +P G LR+ T+ G++ + + F+ +P IQ+QL Sbjct: 70 LRHARRILAEIDAMEQLVSDMQAEPQGLLRVNATLGFGRSHIAPLVPAFVRRHPQIQLQL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + ++ D D IR +P + +I R+L AAP YL P EL Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPTRPAEL 188 Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238 +H+ I GD + FN G + +++ ++LS + + + G Sbjct: 189 PQHDCIDIRQGDDA-HGVWRFN---------GHRKQETVRLRNHLSTNDGEIAVNWALAG 238 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + ++ + + LV+++ D TP ++ YP+ T ++KAF +F+ Sbjct: 239 MGIVMRAEWDIARYLRSGRLVQVLRDYDTPPADIHAVYPQRHAATARVKAFVDFV 293 >gi|190572638|ref|YP_001970483.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010560|emb|CAQ44169.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 309 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 14/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF VA GS T AAE L +S++ +SR ++ +E +G +L +R R ++LT G Sbjct: 7 MTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEAWLGARLLHRTTRRVSLTGPGEAAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E Q EL +P G LR+ ++ GQ+ L + F+ +P +I+L+ Sbjct: 67 ARFRQMLAIGEELQGELASDDPEPHGTLRVTASVSFGQSHLARAVAAFVARHPAARIELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D A+R+ + I SLI R+L T A P YL+ P + + L Sbjct: 127 LVDRMVNLVEERVDLAVRIARQID-PSLIARRLATCRSVLCATPSYLQARGTPTAPEHLA 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 HN +T G + + D L+ +G + N +++ G+GIA+L Sbjct: 186 AHNCLTHHYVGKSLWQLHRDGRSLSVA---VG----GNISANEASLLLEAVRAGAGIAML 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + L+ ++ + ++ Y + ++ F +F+ Sbjct: 239 PTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFL 287 >gi|167614911|ref|ZP_02383546.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 318 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 114/256 (44%), Gaps = 21/256 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA LHL+QS+IS+QI LE +G LF RHARGL LT +GS L+ Sbjct: 13 LRCFEAAGRLGSFTKAAGALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGSVLY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + L T +L P L+++ L L EF L+P ++L Sbjct: 73 EATATAFGSLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLSEFHRLHPQTPVRLR 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID + D D AIR P +L L ++ A AAP YL R P Sbjct: 129 AEFHAIDRETMRADDIDVAIRW-DPFDYRALHVEPLFDEYLVAAAAPAYLG--RHPPRAT 185 Query: 185 E-------LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + H+ + D P+ +E WL A V GE R + S + V Sbjct: 186 AAKWISSVVPLHDASAWPD-APRYVEWRTWLDAVVPGYAGELRGPEFNLASL--AIGAAV 242 Query: 237 LGSGIALLPDYIVKDN 252 G G+ + + +V D Sbjct: 243 AGQGVVVCREALVNDE 258 >gi|330900283|gb|EGH31702.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. japonica str. M301072PT] Length = 305 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 119/246 (48%), Gaps = 4/246 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL++Q Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPLNLQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL +H +I + ++A D E +C + VNS + C G G+ Sbjct: 183 ELVQHQVIEYFSTSTGKRYGLEFMA--DGMGVEHASACSIAVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIV 249 +P Y V Sbjct: 241 VPRYHV 246 >gi|311107999|ref|YP_003980852.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310762688|gb|ADP18137.1| bacterial regulatory helix-turn-helix protein, LysR family protein 158 [Achromobacter xylosoxidans A8] Length = 296 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 9/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD R+F + R G+ AA L + Q++ R+++ LE + +LF R G T Sbjct: 8 MDWDNARIFLAIYRVGTLRGAAALLQVDQATAGRRLAALEASLDARLFLRTPGGYVPTAA 67 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + Q ++Q + SG +R+AT+ + + ++ +PDI Sbjct: 68 GELAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVATSETVATYYVMEAVRRVHAHHPDI 127 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + +++ AD AIR +P + LI R L + YA+ YL+ EP Sbjct: 128 RVTLSTAIQLSNLTRREADLAIRNIRP-DNPDLIHRHLARKEVGLYASKAYLEAHGEPRL 186 Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H L+T+ ++P + F P G R+ +++NS L I++ G GI Sbjct: 187 GTAFAGHTLVTYQQAVLPGWSDTF-----CGEPTGNGRMG-VELNSGLMIIEAVAAGLGI 240 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P ++ P+LVRI P + ++ L T +++A + I Sbjct: 241 GQVPTHMAPQYPDLVRIWPARSEP-YDLWLVMHGDLNRTARVRAVADAI 288 >gi|269961848|ref|ZP_06176205.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833426|gb|EEZ87528.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 304 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 13/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +A + + + A ++L LS + S I+ LE +G++L +R R ++LTE+G Sbjct: 4 EHLKLFVRLASTHNISMAGQELGLSPAVASAHINKLEEGLGVRLVHRTTRKVSLTEEGQA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EV +E + + P+G LR+ G+ L LK F+ YP++ + Sbjct: 64 FLPHAEEVLATVEAARGAVGVGHSAPTGTLRVTAPASFGRLHLVPALKGFMAAYPELTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ID+ D AIRL + ++ S+L+ RKL A+P YL+ P + QE Sbjct: 124 FRFSDSIIDMVEGGFDVAIRLAE-LKDSTLVARKLAPDRRIIVASPEYLEKHGTPKTPQE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H +T L NW+ T D + ++ ++ C+ G G+++ Sbjct: 183 LAEHECVTLMGLD-------NWVFETPDGHYAMRASGSFRTDNGDAMRDACIDGLGVSIN 235 Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V LV I+ED + + +++ YP + K++AF ++ Sbjct: 236 SIWSVYKQLQAGELVEILEDYPLVMNASIWAVYPSSRLIAPKVRAFIDY 284 >gi|167836875|ref|ZP_02463758.1| transcriptional regulator [Burkholderia thailandensis MSMB43] Length = 313 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFARVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + E ++ +PSGKL++ LGQ+ + + YP++Q+ L Sbjct: 66 LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRKRYPEVQVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ + + + S L+ ++L A+ Y++ P Q+L Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEAHGAPQRPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H + G + P D W + P GE ++ +VN ++ G GI Sbjct: 186 ASH--VCLGMVAPGLYWD-EW--KLMGPHGEESVTLAPPPFRVNVAEALAAGIREGMGIG 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y N + VR+M + + +Y Y A R ++ K R W Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|28898450|ref|NP_798055.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153836252|ref|ZP_01988919.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|308094384|ref|ZP_05888966.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308095116|ref|ZP_05903524.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308125828|ref|ZP_05777677.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] gi|308126327|ref|ZP_05909356.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|28806667|dbj|BAC59939.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149750527|gb|EDM61272.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|308086042|gb|EFO35737.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308093612|gb|EFO43307.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308110683|gb|EFO48223.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|308111607|gb|EFO49147.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] Length = 305 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 142/289 (49%), Gaps = 7/289 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR SFT AA ++ ++++++S+ + GLE ++ ++L R R ++LTE+G +L Sbjct: 14 FAHVARHRSFTKAASEMGVTRAALSQHVKGLEKQLQVRLLNRTTRNMSLTEEGQRLLDTL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +E T L + ++P+G +RI+ + + L++ +L EFL YP I+++LI+D+ Sbjct: 74 HPSLSNIEQTLNSLNDLHIEPAGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELIMDD 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I + D IRL + + + +P Y K +P + +L+ HN Sbjct: 134 GLTNIVAEGMDAGIRLGVSLDEHMVAIPITPNLTNAIVGSPDYFKRYGKPETPNDLEHHN 193 Query: 191 LITFGDLIPKCMEDFNWLAT-VDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246 + + ++ ++ + VD+ I EP+ + + + Y S++Q + G G+ D Sbjct: 194 CLAYRFTSSGTLDHWSLTSPDVDKHTVIFEPKGNAVFNDDY-SMLQAAMQGVGLIKHIDL 252 Query: 247 YIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +++K + L R+ D P Y P K++ +F+ K Sbjct: 253 WVLKYLEEGKLERVFVDWCKPFPGFYLYIPSRENMPKKIRVLMDFLIEK 301 >gi|331014330|gb|EGH94386.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 305 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFAKAAESLHIPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + + +P G LR+ + LG+ ++ L EF YP +++ Sbjct: 64 AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL ++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPLQLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H +I + ++ P + ++C + VNS + C G G+ Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHGLACSISVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y + + LV ++ P + YP + + +++ F +++ Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWL 290 >gi|224824574|ref|ZP_03697681.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224603067|gb|EEG09243.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 294 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 13/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF AR S+T AAE+L LSQS+ISRQ+ LE +G+KLF R R + LT+ G + + Sbjct: 13 LLVFESAARHESYTRAAEELSLSQSAISRQVQALEEHLGLKLFRREGRSVRLTDAGRRYY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 SE ++ + ++ SS +G LR+AT G L L EF +P + I + Sbjct: 73 LELSEALGRIRSATLQAM-SSQSGTGALRLATLPTFGSKWLLPRLHEFYASHPGVTIHIH 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 DID + D AI + ++ +L + A P +++ ++ ++ Sbjct: 132 SRIGDIDFNTSEIDAAITVGTG-DWPGMMAHRLYNEFLVAIVDPSGVEDGQD-IAPDWAM 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 K L+T E F+ R + R+ ++ S+L +Q G GI L+P Sbjct: 190 KQTLLTVASNPQAWAEWFSHYHLDHRQM---RMGPSFELTSHL--IQAVRAGIGIGLVPQ 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++ D L+ I E + +P + Y YP + L AFR+++ Sbjct: 245 ALIMDELQRKELITIGEAIASPR-SYYLVYPPRNASLPSLTAFRDWLL 291 >gi|242313760|ref|ZP_04812777.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254186299|ref|ZP_04892817.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254193850|ref|ZP_04900282.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254264379|ref|ZP_04955244.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|157933985|gb|EDO89655.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|169650601|gb|EDS83294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|242136999|gb|EES23402.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254215381|gb|EET04766.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 312 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 11 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF+ +P ++++ Sbjct: 71 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P + + + Q G Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 247 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 G+ALLP+++V+D+ +++ + F VY YP A K++A+ +FI Sbjct: 248 DGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 302 >gi|167905975|ref|ZP_02493180.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] Length = 336 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + +L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPCDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|113867131|ref|YP_725620.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113525907|emb|CAJ92252.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 302 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 131/295 (44%), Gaps = 15/295 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+ F AR SFT AA +LH++Q ++S+Q+ LE +G++LF R + L LT G + Sbjct: 10 ELQAFEAAARHNSFTVAARELHVTQGAVSKQVRSLEAYLGVELFQRVRQRLMLTTAGERY 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++LE +EL + G L IA+ LG L L +F +P+++++ Sbjct: 70 LERIGPSLNELEAATVELMARQGR-GGVLHIASMPTLGAKWLIPRLPQFFARHPEVKLEF 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQ----RKLVTIHMHAYAAPHYLKNCREPLS 182 + + D S D AIR + SL R+++ + A P + Sbjct: 129 VPHAQGYDFSEPDLDAAIRFGDGVWPGSLADYMTGREVLPVCRPGLLASEPGGVAPTPAA 188 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + T +P+ D W AT+ P E S + + + + Q + G GIA Sbjct: 189 LLRYPLLHHTT----VPEAWPD--WFATLGVPTRE-AWSGARFDQFSLLTQAALSGLGIA 241 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 L+P ++++ LV + Y CYPE ++ L+ FR ++ A Sbjct: 242 LIPRCLIEEELATGALVVAHPAQVLAKKGYYLCYPEQKQHLPALRTFRAWVMEGA 296 >gi|28869938|ref|NP_792557.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853183|gb|AAO56252.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 305 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFAKAAESLHIPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + + +P G LR+ + LG+ ++ L EF YP +++ Sbjct: 64 AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL ++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPLQLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H +I + ++ P + ++C + VNS + C G G+ Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHGLACSISVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y + + LV ++ P + YP + + +++ F +++ Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWL 290 >gi|328469471|gb|EGF40417.1| putative transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 318 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GSF AA+ S++S+ I LE+++GI+LF R R + LTE G + Sbjct: 7 LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAGRRYA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + L+ + SG L+I + G+ ++ LKEF YP I I + Sbjct: 67 NTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +DI D +IR +Q S LI R+L I + YL P + Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIMRQLSPIDFIICGSQDYLTRHGVPSGPDAFN 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F G L+P M + + + + P + + VN S+ + C G G+ Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGTSEYN-----PERNFI-VNDGESMAELCAEGLGLT 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +I +D LV I + VY Y +++ F +FI Sbjct: 240 QIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290 >gi|315297457|gb|EFU56736.1| transcriptional regulator, LysR family [Escherichia coli MS 16-3] Length = 302 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 10/205 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L++F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G Sbjct: 5 NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ +LE L + + PS +R++ ++L+ LK FL YP+I Sbjct: 65 ERIIACLEPRIDELERELESLIQLNGAPSWNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L++DN +DI D IRL + + + R + M +P Y P + Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL 208 EL H +C+ + W+ Sbjct: 185 HELQNH----------RCINNVTWI 199 >gi|296536519|ref|ZP_06898608.1| transcriptional activator AmpR [Roseomonas cervicalis ATCC 49957] gi|296263155|gb|EFH09691.1| transcriptional activator AmpR [Roseomonas cervicalis ATCC 49957] Length = 291 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR SFT A +LH++Q++IS Q+ LE +G+ LF R RGL LT++G+ Sbjct: 11 NALRAFEASARHLSFTKAGLELHVTQAAISHQVKSLEENLGVALFRRLPRGLALTDEGAA 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L +E + ++ + + V+ L + L L L+ F +P I ++ Sbjct: 71 LLPEIAEGFRRIGRSLDRFEAGQVREV--LTVGVVGSLAVGWLLPRLERFRQAHPFIDLR 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ +N +D++ + DCAIR + R L + + AP R P ++ Sbjct: 129 LLTNNNRVDLAGEGLDCAIRFGDGAWHGTEAVR-LFSAPLSPACAPGVAARLRRP---ED 184 Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L L+ D P+ W A++D P PR + +S L + + G+G+AL Sbjct: 185 LAGEVLLRSYRADEWPR------WFASLDLPCPPPR--GMIADSSLVLAEAAAQGAGVAL 236 Query: 244 LP 245 LP Sbjct: 237 LP 238 >gi|283835902|ref|ZP_06355643.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] gi|291068073|gb|EFE06182.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] Length = 299 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 21/301 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L L + S+SRQI LE +G +L +R R + LT+ G + Sbjct: 7 MQLFTRVAELESFSRAADTLGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQDGMIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ SGKLR+ + + +NL+ L FL YP ++++L Sbjct: 67 ERAKDLLSNLDELDGLFHHDPASISGKLRVDMPVGVARNLVMPRLPGFLHQYPGLELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ ++ S LI R L + A+P YL P S+++L Sbjct: 127 SSDRLVDLIREGFDCVVRV-GTLKDSGLIARPLGKLTQVNCASPKYLARFGYPESLEDLA 185 Query: 188 KHNLITFGDLIPKCMEDF--------NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H ++ + + + F W+ T L VNS + C+ G Sbjct: 186 SHAVVHYSVNLGTRAQGFEVATGSGIQWVKTG---------GMLTVNSTETYHAACLAGL 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI +P V++ LV ++ V YP + ++ F ++ +D Sbjct: 237 GIIQVPRVGVREALRAGTLVEVLPQYRAEPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKD 296 Query: 297 W 297 + Sbjct: 297 Y 297 >gi|83716147|ref|YP_439671.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83649972|gb|ABC34036.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 325 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 12/297 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + +F V ++GSFT AA L + ++++SR++ LE ++G++L +R R L LT Sbjct: 21 MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 80 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS + + +L+ + + P G LR+ G + L F YP Sbjct: 81 EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 140 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D++++++ + +D+ D D A+RL + S L+ R+L + YA+P YL P Sbjct: 141 DVRLEILASHVPLDLVADEIDIALRL-GVLADSDLVARRLGSFATGVYASPSYLMRHGVP 199 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCV- 236 EL H +T + + + + +P G + L V S +++ + Sbjct: 200 EHPGELGAHRALT----LHQARRAVGYAWPLRKPGGRAQYFALDPVIVASDPALIHDALC 255 Query: 237 LGSGIAL-LPDYIVKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ L + + D+ + R++ D P+ +P + K++AF +++ Sbjct: 256 AGEGLTLAMHQSMAADHEAGRVRRVLSDWSGPAQDFNALFPRGRVASPKVRAFVDYL 312 >gi|115360894|ref|YP_778031.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286222|gb|ABI91697.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 330 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 18/247 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F AR SFT A ++L+++QS++SRQ+ LE ++ I+LF+RH R LTLT++G + Sbjct: 17 DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ S LE+ +L S + S + ++TT+ L L F YPDI ++ Sbjct: 77 LYDAISIALSDLESVVGKLSSSVGQRS--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPI----QSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++ D+ A+R P + L + ++V + A A R + Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPCTPLDDTQVLFRERVVAVCSPALAT---AVGGRPSM 191 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPR---ISCLQVNSYLSIMQYCV 236 + +LDKH L+ D P+ ++ W A + + +G PR + L + Y ++Q V Sbjct: 192 TPDDLDKHVLLHLDD--PR--GEWPWYAWSNLLKALGVPRLRPVGALHFSQYDQLVQAAV 247 Query: 237 LGSGIAL 243 G GIA+ Sbjct: 248 DGHGIAI 254 >gi|330810344|ref|YP_004354806.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378452|gb|AEA69802.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 7/257 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + WD LR+F VAR + + A +QL + QS++SR+I+ LE +G +F R + GL L + Sbjct: 5 NLSWDDLRIFMHVARCQNLSRAGKQLKIDQSTVSRRINQLEYALGFSVFERSSSGLQLND 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG++L + + +L + SG++R+ T L L + + LL+P+ Sbjct: 65 QGARLLAQVEVMGNGFSGLLEQLSSGTNTVSGRVRVGTMEGLASLYLTQQVPKLQLLHPN 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L+ + ++ AD + +P ++ ++ Y + YL + P Sbjct: 125 VTLELVTSTHQLQVTRREADIFLGFFEP-SGQGFHTERVGQFELNLYGSDDYLLSHGTP- 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 S+Q L+ H + + + + + +E WL D I P++ NS L+ M G+G+ Sbjct: 183 SLQTLENHLFVGYIEELVQ-IEAVKWL---DELISTPKL-VFHSNSMLAQMFAASAGAGL 237 Query: 242 ALLPDYIVKDNPNLVRI 258 +LP + + L +I Sbjct: 238 VMLPSFAHAERFGLRKI 254 >gi|299065182|emb|CBJ36348.1| putative transcription regulator protein, LysR family (aaeR) [Ralstonia solanacearum CMR15] Length = 299 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 30/297 (10%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V +GSFT AA QL +S + + + LET +G +L R R +LT+ Sbjct: 2 DKLRSMETFVAVVDAGSFTEAATQLEISAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V ++ + ++ +PSG LR++ G ++ F +P + Sbjct: 62 GRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D++ + D A+R+ + + L+ + L M A+P YL P + Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRI-GALGDADLVAKPLCAYRMVICASPDYLARHGRPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPI---GEPRISCLQVNSYLSIM 232 +L H +C+ W L+ D P SC N + Sbjct: 181 PADLPAH----------RCLSHMVWNSRNAWQLSGWDGTTTWRDNPAFSC---NDGHGLR 227 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G+G+ L P+ +V ++ LVR+++ V+ Y + + KL AF Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQTYAPQPRPVHLVYRQDRRPLPKLTAF 284 >gi|221214857|ref|ZP_03587826.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221165396|gb|EED97873.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 324 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEGALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + +T +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQTAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L ++L + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPEDLAHFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|207742543|ref|YP_002258935.1| hypothetical protein RSIPO_00731 [Ralstonia solanacearum IPO1609] gi|206593935|emb|CAQ60862.1| hypothetical protein RSIPO_00731 [Ralstonia solanacearum IPO1609] Length = 308 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 32/290 (11%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W+ F V +GSFT AAE L + +S+ S +S LE +G++L R R L LTE Sbjct: 3 TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 GS + + ++ +L + +S SG LRIA ++G L + + L +P+ Sbjct: 63 AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 122 Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +QIQ+ + + D ++ Y + + + + SSL+ R++V I YAAP L R P Sbjct: 123 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAP 181 Query: 181 LSIQELDKHNLITFGDLIP-KCM---EDFNW---------LATVDRPIGEPRISCLQVNS 227 L+ T DL C+ +D +W A ++ PI +PR+ L N+ Sbjct: 182 LA----------TPADLAGWPCLSGPDDASWGFRPAGAPAAAPLEVPI-QPRLQTL--NA 228 Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + + + V G G+A + + + LVR++ D VY P Sbjct: 229 EMRV-RAAVRGLGVARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMP 277 >gi|83644012|ref|YP_432447.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632055|gb|ABC28022.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 300 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF VA+ +F A+ +LHLS SS+SRQI+ LE E+ + LF R R + LT+QG +L+ Sbjct: 8 LRVFLSVAKHLNFAQASAELHLSASSVSRQITELEKELNVALFTRSTRMVALTQQGQRLY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ L++ + G++ ++ + L YPD+ + L Sbjct: 68 EEAAPLVISLDEVSDCLRQQKEEVGGRVSLSAPWWFASYFIAPALAGLRDHYPDLTVILD 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D++ ID + D +R + + S L+ +K A+P Y++ +P ++L Sbjct: 128 CDDRVIDPNEGLHDIYVRFGR-LNDSRLLAKKFGAYEFWLIASPQYIEKYGDPKHPKDLH 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIAL 243 H L+ + P +W+ D + RI+ L N+ SI+ + GI L Sbjct: 187 DHRLLAYRFSSPHS----SWI--FDDGASQQRIAMQSPYLLTNNTESILHCALNHGGIGL 240 Query: 244 LPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L D+ V ++ L+R+M + ITP+ Y K+ K+K + I Sbjct: 241 LADHGVLNSVKRGELIRLMPNYAITPNRFENGMYLVYSKDKAKIKRVKTVI 291 >gi|53718574|ref|YP_107560.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126453248|ref|YP_001065283.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167737536|ref|ZP_02410310.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167814655|ref|ZP_02446335.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167823123|ref|ZP_02454594.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167844685|ref|ZP_02470193.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167893213|ref|ZP_02480615.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167901667|ref|ZP_02488872.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167909917|ref|ZP_02497008.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167917939|ref|ZP_02505030.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|217419696|ref|ZP_03451202.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|254181468|ref|ZP_04888065.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254196355|ref|ZP_04902779.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|254260570|ref|ZP_04951624.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|52208988|emb|CAH34927.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126226890|gb|ABN90430.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|169653098|gb|EDS85791.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|184212006|gb|EDU09049.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|217397000|gb|EEC37016.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|254219259|gb|EET08643.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 320 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ + LET +G++L R R L LT +G+ Sbjct: 7 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E + P G++RI + + G++ L L EF YPDI + Sbjct: 67 AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D + +D AIR + S L+ RKL M AP YL+ P + Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +LD+HN I P E+ L P L + SI + V G G+ Sbjct: 185 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 236 Query: 242 ALLPDYIVK---DNPNLVRIME 260 A L + V D LV ++E Sbjct: 237 ARLARFHVDADLDAGRLVPVLE 258 >gi|242240724|ref|YP_002988905.1| LysR family transcriptional regulator [Dickeya dadantii Ech703] gi|242132781|gb|ACS87083.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703] Length = 306 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 11/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + + SF+ AAE + L ++++S+ + LE +G +L R R + +T++G + Sbjct: 7 MRVFVRIVETESFSRAAENMGLPRATVSQVLKRLEVRLGARLLLRTTRQVRMTDEGRLYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++E T +PSG++RI L + ++ L F YPDI + L Sbjct: 67 QRCVQLLAEIEETDALFSHQRQRPSGRVRIDMPHSLARLVVIPQLPAFYQRYPDISLALS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ I++ + DC +R I SL R+L ++ A+ Y EP S++ L Sbjct: 127 ANDTPINVIREGVDCVLRAWI-IDDDSLAARQLASLPQITCASAEYCARYGEPDSLESLS 185 Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H ++ G P+ + + ++ R P P + + VN + + C+ G GI Sbjct: 186 SHRMV--GYFSPRMAQGYPLEFMRQGQRLPYMLP--TWIDVNGADAYVAACLAGMGIMQA 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P Y ++ D+ LV ++ + P +Y YP Sbjct: 242 PCYGLRPYLDSGELVTLLPQMPPPDMPLYVMYP 274 >gi|167033915|ref|YP_001669146.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166860403|gb|ABY98810.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 300 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 24/297 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V +G F A QL + +S +SR+I+ LE +G +L R R L LT G Sbjct: 3 DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + S +P G+LR++ + L L + FL YP +Q Sbjct: 63 ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L N+ +D+ + D A+R+R + +L+ R+L M AAP + + REP Sbjct: 123 LDMVLINRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPGE 182 Query: 183 IQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + L + L+ F L P + L EPR++ ++ ++ Sbjct: 183 LASLPVLGAAEADRLVHFRLLGPDGKQQEIAL--------EPRLA---IDDFVVRNAAVR 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G LP ++ LVR++ D P + YP G L A R +I Sbjct: 232 AGLGFTALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285 >gi|94499203|ref|ZP_01305741.1| putative transcriptional regulatory protein (LysR family) [Oceanobacter sp. RED65] gi|94428835|gb|EAT13807.1| putative transcriptional regulatory protein (LysR family) [Oceanobacter sp. RED65] Length = 300 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 20/299 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA++ SFT A ++ + SSISR+I+ LE +G L R R + LTE G + + Sbjct: 7 MQYFAEVAQTSSFTAAGKRFDVPASSISRRIADLEQHLGATLLNRTTRLVHLTEVGQEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E ++ +++ +P GKL I++ + G+ +L L EF L+P + + + Sbjct: 67 AQVKSILDQIERSETYVRQYQSEPQGKLVISSMVGFGERILIPLLDEFRALHPKVVLDVR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ++ D D AIR + ++ +KL+ A+P YL+ P+ ++L Sbjct: 127 LSDEVSQLNRDQVDIAIR-GGYAPNERVVAKKLMNNQFIPVASPSYLEANGLPIKHEDLK 185 Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 KH + F G ++ W +P L N+ ++ + G G+ + Sbjct: 186 KHQGLFFRTPMGPTPWLYQQNGQWHDVSPKP-------TLISNNGKWLIARAIEGQGLLM 238 Query: 244 LPDYIVKDNPNLVRIMEDVITP--------SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 LP ++V+ ++ + P F VY Y + K+KA +FI +A Sbjct: 239 LPAWVVQSQLESGELVSLKLDPPLQISDGAGFGVYILYETDMYRIPKIKAAVDFILARA 297 >gi|124266064|ref|YP_001020068.1| LysR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258839|gb|ABM93833.1| transcriptional regulator, LysR family [Methylibium petroleiphilum PM1] Length = 313 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 8/298 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F V +G+FT AA+ L L + +++R + LE ++ KL R R +T+T G+ Sbjct: 4 FSAMQAFVRVVEAGNFTKAADSLQLPKPTVTRLVQMLEAQLQTKLLNRTTRRVTVTPDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + + + P G+LRI +G +L L +F LYPDIQI Sbjct: 64 AYYDRAIRLLGDIDELESSMSHAKTSPRGRLRIDVGSSVGTLVLIPALPQFHALYPDIQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D+ + DC +R + I SL+ R++ + A A+P YLK P + Sbjct: 124 DLGVSDRPVDLLSENVDCVLRGGELI-DQSLVARRVGELQFLAAASPDYLKRHGMPRHPR 182 Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL+ H +I F F++ +R I L VN + + + G G+ Sbjct: 183 ELESGAHAVIGFFSARTGRQYPFDFHKDGER-IEVAGRYVLSVNDSNAYVAAGLAGLGVV 241 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARD 296 ++++ L ++ D + ++ YP + KL+ F +++ L ARD Sbjct: 242 QAATFMLQTHISRGELEPVLADWCSEPVPIHVVYPPNRHLSAKLRVFVDWVAELFARD 299 >gi|330967376|gb|EGH67636.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 297 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F +VAR SFT AA +L ++ S++S + LE +G++L R R + E G + Sbjct: 7 NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPPEAGEQ 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +L+ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + AP Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEKHPVPLQPQD 186 Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L +H I C + W D R++ NS + ++ + G G+A Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243 Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286 +P + + + R+ E ++ +P F + YP + + AF Sbjct: 244 VPISLAQPHIESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289 >gi|323967147|gb|EGB62571.1| LysR substrate binding domain-containing protein [Escherichia coli M863] gi|327253689|gb|EGE65318.1| hypothetical protein ECSTEC7V_1114 [Escherichia coli STEC_7v] Length = 302 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 26/302 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLIPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQ 233 +P +L H + F P + F+W + I I V++ L + Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVAGNIILDDVDAELDAV- 230 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288 ++G+GI L +K D L ++ED IT P F +Y YP + L+AF + Sbjct: 231 --LMGAGIGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIY--YPNRQYMSCGLRAFLD 286 Query: 289 FI 290 ++ Sbjct: 287 YV 288 >gi|268593088|ref|ZP_06127309.1| transcriptional regulator, LysR family [Providencia rettgeri DSM 1131] gi|291311357|gb|EFE51810.1| transcriptional regulator, LysR family [Providencia rettgeri DSM 1131] Length = 306 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 147/291 (50%), Gaps = 11/291 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ VF + GS + AAE+L +S++ ++R +S +E G++L R R L+LT Sbjct: 2 DRLKAAEVFITIVEQGSLSGAAEKLDMSRAMVTRYLSEMEQWAGVRLLNRTTRKLSLTSA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +++ + ++ + ++ + + SG +RI+ + + Q+ L + EF+ LYP++ Sbjct: 62 GEGVYQQSLQLNAISQMVPVQQELDAKALSGLVRISCSQSIAQSALSVAISEFMKLYPNM 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + + NK +++ + D AIR+ ++ SLI + L T H A+P +LK ++P Sbjct: 122 AIDMQISNKSVNLIEERIDLAIRITNQLE-PSLIAKPLSTCHSVICASPDFLKGKKQPEK 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L + +T+ + + + F + + R+S N + + + + G+GI+ Sbjct: 181 PEDLVLLDCLTY-NFFGRSLWVFEKAGMQHSVLVDGRLSA---NESVFLAEATLQGAGIS 236 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + P Y V + + LV+++ + +Y Y K L+ +++ Sbjct: 237 MQPYYSVANHLASGELVQLLPEYTPMPLGIYAVYTSRQKMPTALRVVIDYL 287 >gi|157370695|ref|YP_001478684.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157322459|gb|ABV41556.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 295 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 122/283 (43%), Gaps = 16/283 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L F VAR SFT AA QL ++Q ++S+ IS LE + I+L R R ++ T Sbjct: 1 MKRNLNDLLYFVTVARESSFTRAAAQLGVTQPALSQAISALEERMQIRLLTRTTRSVSPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L ++E L E KP+G++RI D+ + L L L YP Sbjct: 61 SAGERLLLAIGNRIDEIEAELDMLTELRDKPAGRVRITCGPDVLHSTLLPKLSPLLREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI I+ ++ DI D D +RL I + + M AAP Y P Sbjct: 121 DINIEFDANHGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPKLRMAVVAAPDYFSRYPIP 180 Query: 181 LSIQELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQY 234 + EL +H ++ G L + W D R+S L N+ + I+ Sbjct: 181 NTPHELTQHLCINQRMVRSGGL-------YVWDFDQDGGDLNVRVSGQLIFNTSVHIVDA 233 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + G GIA LP+ ++ L+R++E P Y YP Sbjct: 234 ALAGLGIAFLPEEEFGKHIEDGRLIRVLEPWCKPFPGYYLYYP 276 >gi|114763708|ref|ZP_01443102.1| transcriptional regulator, LysR family protein [Pelagibaca bermudensis HTCC2601] gi|114543709|gb|EAU46722.1| transcriptional regulator, LysR family protein [Roseovarius sp. HTCC2601] Length = 293 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 16/288 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 3 NWDEIRTAYQVARLGTVSGAAEVLGVHHATVIRHIDALEARMGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + + ++ SG+L + + I+ L+ G L+ F +P+I Sbjct: 63 QDLARVAQATDDQFQQLAGRIKGQGEGVSGELLVTSLINF-SPLMVGALESFREAHPEIV 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ + + + A A+R Q + + + + A Y++ +P S+ Sbjct: 122 VRYLTGTRLFRLEYGEAHVALRAGSAPQEPDNVVQPFARQAVALFGARSYIERRGKPDSV 181 Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSGI 241 + L H+ + + D P + W+ + + R+ + + Q V G+G+ Sbjct: 182 EALQSHDFVGYDD--PDSRAPYAIWM---KKHVPFERVVFRAEDG--RVQQEAVRAGAGL 234 Query: 242 ALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAF 286 + + + +P+LV+I+ ED +P + V L T K++AF Sbjct: 235 GFMAEQEGRADPDLVQILPAQEDWSSPLWLVTHV---DLHRTPKVQAF 279 >gi|91223043|ref|ZP_01258309.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|91191856|gb|EAS78119.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] Length = 318 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GSF AA+ S++S+ I LE+++GI+LF R R LTE G + Sbjct: 7 LRFFIATLDGGSFAAAAKVYGTDPSTVSKAIHRLESDLGIQLFQRSTRQSRLTEAGRRYA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + L+ + SG+L+I + G+ ++ LKEF YP+I I + Sbjct: 67 NTARFVLEELAACEDSLKSHNDALSGQLKINVPVSYGRLYIRPLLKEFCRRYPNITIDIH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +DI D +IR + S LI R+L I A+ YL P + Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVHDSQLIVRQLSPIDFIICASQDYLARHGVPSGSDVFN 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F G L+P M + + + D P + + VN S+ + C G G+ Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGASEYD-----PERNYI-VNDGESMAELCAEGLGLT 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +I +D LV I + VY Y +++ F +FI Sbjct: 240 QIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290 >gi|300702496|ref|YP_003744096.1| transcriptional regulators, lysr family [Ralstonia solanacearum CFBP2957] gi|299070157|emb|CBJ41448.1| Transcriptional regulators, LysR family [Ralstonia solanacearum CFBP2957] Length = 298 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 124/283 (43%), Gaps = 20/283 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q + R + LE +G LF R +GL+ TE Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L LE+T L ++ G +RI + + +L L + YP Sbjct: 68 VLQ----PYAESLESTSAALLRAASSQGQGVRGTVRITASEVVTGEVLPAILADLHAAYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L+ N+ D+ AD A+R+++P Q LI R + I + +A YL+ P Sbjct: 124 GLTLELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTP 182 Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++ +L H LI + I W+ DR L+ +S L+ + Sbjct: 183 ATLDDLAGHALIGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRA 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 G GI + + + +P+LVR+ D + P + E L+++ Sbjct: 235 GFGIGICQVGLARRDPDLVRLFADEVAPVLDTWLAMHEDLRDS 277 >gi|264678214|ref|YP_003278121.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262208727|gb|ACY32825.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 278 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 22/290 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F AR S T AA++LH++Q+++S+ I LE +G LF R RGL LT++G L V Sbjct: 1 MFDAAARHQSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALTDEGQALWPV 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ + ++E + ++ E +P L + L L +F L+P I ++L+ + Sbjct: 61 VAQSFERIEQSLQQVAEP--RPREILTVGVVGTFAIGWLIPRLSQFQQLHPYIDLRLLTN 118 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSIQELD 187 N +D++ + D A+R + Q L+ + P + REP L++Q L Sbjct: 119 NNRVDLAGEGLDAAVRFGDGAWHGTHAQ-MLLRAPLSPMCTPMLAQQLREPADLALQTLL 177 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + E W A +D+ P +S L++ + G+GIALLP Sbjct: 178 RSY---------RTQEWEGWFAGLDQ--AAPLARGAMFDSSLTLAEAAAQGAGIALLPAR 226 Query: 248 IVK---DNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + + LVR +V T ++ + Y ++ + + L+ FR ++ + Sbjct: 227 MFEHMLQQGRLVRPFAHEVDTGAY--WLTYLKSRQASAALQTFRQWLMTQ 274 >gi|258625175|ref|ZP_05720091.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258582550|gb|EEW07383.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 299 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIGLGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L KHN + + + +F N++ V ++ ++ + + G Sbjct: 183 LVKHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV + + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272 >gi|118593198|ref|ZP_01550584.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] gi|118434283|gb|EAV40938.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] Length = 308 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 130/284 (45%), Gaps = 6/284 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW++ R F V A GS + AA L L+Q ++SRQ++ LE +G+ LF R ++ L LT Sbjct: 6 ITFDWNQARAFLVTAEEGSLSAAARALGLTQPTLSRQVAALEETLGVTLFQRVSKSLILT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + + S + G + ++TT + ++L G L++ P Sbjct: 66 EAGIELADHVRAMGDAASRVSLAASGKSQQVEGLVTVSTTDLMAAHVLPGILRDLRKKAP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++++++ N D+ AD AIR +P L RKL + + A ++ P Sbjct: 126 GVEVKVLCTNSLSDLRRREADIAIRHVEP-DHPDLYARKLRSAPARIFGARSLVEQFGRP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L+ ++ + I F + E +L + E I L S + ++ G G Sbjct: 185 LTKEDAPDLDFIGFDN----NEELIGYLRVFGLKVTEVNIR-LGSPSGVVAWEFVRQGLG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +A++ D I P +V D+ SF ++ L + +++ Sbjct: 240 LAIMADEIADRFPEVVPAFADIEPISFPIWLVTHRELHTSRRIR 283 >gi|72383824|ref|YP_293178.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72123167|gb|AAZ65321.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 303 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 18/256 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + F V G FT A L L +S++S ++ LE +G++L R +R T+TE Sbjct: 2 LDLKDVYFFVQVVDRGGFTSAGNSLGLPKSTLSHRVKELEASLGVRLINRTSRQFTVTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ ++ + + + +++ +PSG +R+ ++L Q L+ L FL +P + Sbjct: 62 GAEFYQYAVALLQSAQVAEEAMRQRLAEPSGVIRVTVAVELAQFALRRILPTFLGNHPKV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + + +D+ + D AIR P+Q S+LIQR L +A YL+ Sbjct: 122 SIIEVATERLVDVVGEGFDLAIRGHTAPLQDSNLIQRPLARAPWFLFAGADYLERAPRLD 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQY 234 +L H +I G P W + P G EPR Q S +S+ + Sbjct: 182 EPAQLASHTIIAMGRKGPP-----QW--QLQGPQGQTVTVHIEPR---FQSTSMMSLKEA 231 Query: 235 CVLGSGIALLPDYIVK 250 GIA +P YI + Sbjct: 232 ACSNLGIAAIPGYICR 247 >gi|323966039|gb|EGB61479.1| LysR substrate binding domain-containing protein [Escherichia coli M863] gi|327251164|gb|EGE62857.1| hypothetical protein ECSTEC7V_4151 [Escherichia coli STEC_7v] Length = 299 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL +P I+++L Sbjct: 67 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +DI D DC IR + +I L + M A+PHYL P S +L Sbjct: 127 SHNRPVDILHDGFDCVIR-TGALSEDGVIACPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + G GI +P Sbjct: 186 SHAIVRYTPHLSVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGFAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|167718486|ref|ZP_02401722.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] Length = 320 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ + LET +G++L R R L LT +G+ Sbjct: 7 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E + P G++RI + + G++ L L EF YPDI + Sbjct: 67 AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D + +D AIR + S L+ RKL M AP YL+ P + Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +LD+HN I P E+ L P L + SI + V G G+ Sbjct: 185 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 236 Query: 242 ALLPDYIVK---DNPNLVRIME 260 A L + V D LV ++E Sbjct: 237 ARLARFHVDADLDAGRLVPVLE 258 >gi|317049580|ref|YP_004117228.1| LysR family transcriptional regulator [Pantoea sp. At-9b] gi|316951197|gb|ADU70672.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 299 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 134/285 (47%), Gaps = 26/285 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++LR + V +GS T AAEQL + S ISR +S LE+++ L +R R L LT Sbjct: 1 MKITLEELRAWVTVVDTGSITSAAEQLEQTSSGISRALSRLESKLETTLLHRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ +E + ++ + P+G+LR+ +++ + F +P Sbjct: 61 EEGQIFLEHARQILASVELAEEQIAQRRDVPAGRLRVNAAAPFMLHVIVPLVDAFRQRFP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ++L D+ ID+ D AIR+ + ++ SSL R L + + A+P YL P Sbjct: 121 QIQLELNTDDIVIDLLEQQTDIAIRVGE-LRDSSLRARVLGSSAIRLLASPAYLAKHGMP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS------IMQ 233 ++ L H L+ F L E N W P+ + L+V LS + Q Sbjct: 180 QTVASLHDHQLLGFSQL-----EAHNVW------PVWQQEGEFLRVKPTLSASSGETLRQ 228 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYF 271 + G GI L D++ + + LV+++E ++ P VY+ Sbjct: 229 LALAGQGIVRLSDFVSRGDRVSGRLVQVLETETRELRLPIHAVYY 273 >gi|217423379|ref|ZP_03454880.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|217393237|gb|EEC33258.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 350 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 54 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 113 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 114 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 173 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 174 VQMQLTDAVVDLIAHDVDVAVRI-GMLADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 232 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W P + N + + G+GIAL Sbjct: 233 ADLCAHRCIVLGE-----QPRVEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 287 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 288 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 345 Query: 298 KF 299 ++ Sbjct: 346 RW 347 >gi|76812150|ref|YP_333284.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|76581603|gb|ABA51078.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] Length = 333 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 37 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 96 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 97 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 156 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 157 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 215 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W P + N + + G+GIAL Sbjct: 216 ADLCAHRCIVLGE-----QPRVEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 270 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 271 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 328 Query: 298 KF 299 ++ Sbjct: 329 RW 330 >gi|15837734|ref|NP_298422.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c] gi|9106094|gb|AAF83942.1|AE003949_6 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c] Length = 301 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 13/279 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +++F V +G F A ++L L++S+I + I+ LE +G++LF R R +LTE G Sbjct: 5 FDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLTEDGQ 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +L + L++ + +G+L ++ + G++ + L+ + +P +++ Sbjct: 65 QYYERCLRAIKELRAGEAMLEQGRREVAGQLHVSLPVLFGRHCVAPILRTYAREHPQLEL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + +D+ D D A+R ++L R+L A+P YL +P ++ Sbjct: 125 ELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPIYLAARGKPHTLA 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 +L H+L+T+ C D N T+ G P S L+ N I V G G Sbjct: 185 DLADHDLLTY------CRNDRNMAWTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 +A LP +++ + L+ I D + + +P A Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVMECHVVWPAA 277 >gi|330823298|ref|YP_004386601.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308670|gb|AEB83085.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 321 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 3/188 (1%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R F VAR +F AA++L L+QS++SRQI LE EVG+ LF RH R + LT G +LHR Sbjct: 21 RAFLAVARHLNFRAAADELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTGAGVQLHR 80 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + +L+ ++++ + + S + IAT L ++EF +PDI I++ Sbjct: 81 AVAPALDRLDAAVRQVRQMAGRRS--VAIATWASFASMWLIPRMEEFQCAHPDIDIRIDT 138 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + +D+ D A+R P S+ +R L + A+P LK+ ++ + Sbjct: 139 SDSVVDLDTADVDLALRWATPGGSAPGAER-LFGEQLAVVASPWLLKSMPPVRQPADVAR 197 Query: 189 HNLITFGD 196 LI GD Sbjct: 198 FALIEAGD 205 >gi|68342508|gb|AAY90131.1| putative transcriptional regulator [uncultured bacterium pCosCE1] Length = 309 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 101/193 (52%), Gaps = 12/193 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR GSFT AA QL ++ ++S+ I LET +G++LF R +R + L+++G + Sbjct: 8 LPFFEAVARLGSFTQAANQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGRLFY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ +L+ +PSG LRI L+ +L EF YP+IQ++L Sbjct: 68 QRVAPAMGQIDVAAEDLRTLRGRPSGLLRITLPQLAASLLVIPHLAEFQARYPEIQLELF 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNCREPL 181 D+ D+ +D D IR+ +++Q+ ++ + + AAP YL P Sbjct: 128 TDDHFSDLVLDSFDAGIRMH------AMLQKDMIAVPIDNGQKRVVIAAPGYLAQHGTPQ 181 Query: 182 SIQELDKHNLITF 194 + Q L+ H+ + + Sbjct: 182 TPQALNDHDCLRY 194 >gi|312961245|ref|ZP_07775750.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311284903|gb|EFQ63479.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 304 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F AR GSF+ A ++LH++Q++ISRQI GLE +G+KLFYR R + LT++G L RV Sbjct: 17 FEAAARLGSFSKAGDELHITQAAISRQIRGLEDNLGVKLFYRRNRAVFLTQEGHDLARVV 76 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S+ H + + L+ S S ++ + + L L F YP I+IQ++ Sbjct: 77 SDALHSIRDSAARLRAS--PHSNRVVLLCQLCEAFYWLMPRLSSFHQQYPQIEIQVVTST 134 Query: 131 KDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + + D A++ R+ + L+ + + +P YL + PLS+ +L Sbjct: 135 RPLTEFTGPFDVALQSTRRASGAHPLM--FTASDEVFPVCSPAYLATPK-PLSLADLQSC 191 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + P ME +WL + + E S + +SY ++Q V G G+A+ Sbjct: 192 TFLHHSSEPPHLMEWESWLQVFGQALAEDARS-VTFDSYPLMLQAAVEGHGVAM 244 >gi|311107070|ref|YP_003979923.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310761759|gb|ADP17208.1| bacterial regulatory helix-turn-helix protein, LysR family protein 130 [Achromobacter xylosoxidans A8] Length = 301 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/283 (23%), Positives = 129/283 (45%), Gaps = 8/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA +L +S +S+S+ +S LE +G L R R + LT+ G + Sbjct: 7 MSVFCKVVEHGSFTVAATRLDMSTASVSKNVSALEDHIGTPLLARTTRRIVLTDAGKTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + +E + + P G L++ I G L + F +P++ +++ Sbjct: 67 DKCSRILEDVEEAERTAGQVQTTPRGLLKVRAPISFGSANLGRLITAFTTSFPEVTVEMT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D + + D A+ + + + + + T+ AAP YL+ P IQ+L Sbjct: 127 LNDRYLDPAEEGVDVALYIGATPKHFAAGAQAIATLPRMLVAAPLYLERQGLPTEIQDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246 H + + + W T + +S L+ N+ ++ + G+G+ LLP Sbjct: 187 SHQCLVYT----RGASPSEWRFTRNGVEQTVHVSGSLRCNNSQTLHDAALSGAGVGLLPT 242 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++V + L ++ D +Y YP+ +++ K++ F Sbjct: 243 FLVAQDLACGRLTHLLPDWQPAERNLYAVYPQPRRSSPKVREF 285 >gi|254524116|ref|ZP_05136171.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219721707|gb|EED40232.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 324 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 99/188 (52%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SFT AAE++ +S+ ++S+ + LE ++G++L +R R ++LTE+G +L Sbjct: 14 QLAWFAHIAHHRSFTKAAEEMGVSRPALSQSLKTLEKQLGVRLLHRTTREMSLTEEGQRL 73 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +++ +L+ S PSG LRI T + L++ +L EF LYP+++++L Sbjct: 74 FDAVQPSLSTIDSAVRDLRASHDAPSGLLRINTARLTAKTLIEPHLPEFFALYPELRVEL 133 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D+ I + D IRL + + + + M A+P YL P + EL Sbjct: 134 VMDDGLSSIVAEGCDAGIRLGERLAKGMIAVPVTPMLEMVVVASPAYLARHGTPSTPAEL 193 Query: 187 DKHNLITF 194 H + + Sbjct: 194 AGHECLGY 201 >gi|212635360|ref|YP_002311885.1| transcriptional regulator [Shewanella piezotolerans WP3] gi|212556844|gb|ACJ29298.1| Transcriptional regulator [Shewanella piezotolerans WP3] Length = 297 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 17/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA SFT AAE+L LS+ +SR ++ +E + +L +R R ++LT G Sbjct: 7 MRSFVEVAHCASFTKAAERLDLSRLQVSRHVNEIEAWLEQRLLHRTTRKVSLTTAGEAAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H+ ++ + + SG +RIA I L QN+L +++F + + +QL Sbjct: 67 LRCEMILHETLALEVAAKHHTPSLSGTIRIAAPIGLTQNMLIDAVEKFTGAHAGVNVQLF 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ++ + D A+R + + +LI R+L+ I A+ YL+ EP I+EL Sbjct: 127 ASDQFAELVDERIDIALRYTEQ-PADNLIARRLMNIDSVICASAAYLEQFGEPKEIEELK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP- 245 +HN +E +W D +S ++ N +++ G GI LLP Sbjct: 186 EHNCFLH-------LEKTSWEFIRDNSRSAITVSGSIKANDLGVLVKAAQHGKGIVLLPC 238 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + ++ D +L I+ + PS T++ Y L + +L R FI A W Sbjct: 239 DLANPLISDG-SLQMILSEYEIPSSTLWAVY---LSRSYQLPVVRQFIDFLAEHW 289 >gi|167856830|ref|ZP_02479465.1| transcriptional regulator, LysR family protein [Haemophilus parasuis 29755] gi|167852046|gb|EDS23425.1| transcriptional regulator, LysR family protein [Haemophilus parasuis 29755] Length = 243 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 124/254 (48%), Gaps = 29/254 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64 ++VF VA +GSFT AE+L +S+ ISR ++ +E + +LF R R + LT+ G Sbjct: 7 IKVFLTVAETGSFTATAERLEISKPMISRYVALMEEWLNARLFQRSTRKVALTDAGEQAV 66 Query: 65 ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++ +T+E+ ++ Q EL+ G LR+ ++ G L + FL L+P Sbjct: 67 LFCQRIANLTAEMEQEMMAQQGELR-------GALRVTSSQTFGAYHLVQMVNRFLQLHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + IQL+L+++ +D+ + D AIR+ + I RKL H A P YL P Sbjct: 120 KLNIQLLLNDQTMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPEYLTKFGTP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235 ++L +H+ ++ ++ K W T GE + S N +++ Sbjct: 179 TQPEDLYQHHYLSHHNINRKA-----WKCTQ----GEQEVLLDLNSRFTTNDTQALLNSV 229 Query: 236 VLGSGIALLPDYIV 249 + +GIA+LP Y++ Sbjct: 230 LDSNGIAMLPKYML 243 >gi|84389440|ref|ZP_00991246.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] gi|84376955|gb|EAP93828.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] Length = 298 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 139/304 (45%), Gaps = 35/304 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA SFT AAE L +S+ +SR + +E + +L +R R ++LT G Sbjct: 7 MRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTTAGEIAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126 + ++ H+ ++ + SG +RIA I L Q++L +++F L+P I ++L Sbjct: 67 QRCEKILHETAELEVTALNQTDALSGTIRIAAPIGLTQHMLLSVVEQFTELHPSITVELF 126 Query: 127 -------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 ++D++ IDI++ Y D +P SLI RKL+ I A+ YL E Sbjct: 127 ASDHFAQLVDDR-IDIALRYTD------QP--DDSLIARKLMEIDSVVCASQDYLDKHGE 177 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238 P +++ L +HN + + W D +S ++ N + + G Sbjct: 178 PETVEALRQHNCF-------RHLSVSKWDFVKDNQHYSVEVSGTIKANDVGVLARAAQHG 230 Query: 239 SGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ LP + NP L RI++D ++PS ++ Y L + +L R FI Sbjct: 231 KGVVRLPCDLA--NPLITEGKLKRILDDFVSPSSVLWAVY---LSRSYQLPVVRQFIDFA 285 Query: 294 ARDW 297 A W Sbjct: 286 AEAW 289 >gi|332307014|ref|YP_004434865.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174343|gb|AEE23597.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 302 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 18/299 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AA+ H+ SS+SR+++ LE +G L R R + LTE G + Sbjct: 7 IRYFCKVVETGNFTQAAKAFHVPASSLSRRVADLEKSLGATLLKRSTRVVKLTEIGRTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE + ++ P+G+LRI+ ++ G+ +L L+EF YP I + + Sbjct: 67 AQVNDILRQLELSNDTVRSYQTVPTGQLRISAMVEFGEPILFPLLEEFSQRYPQIVLDVR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ++ D D AIR + ++ KL+ A A+ YL P EL Sbjct: 127 LSDELSALTRDEVDIAIR-GGYAPNERVVAIKLMENQFVAVASQQYLTQFGTPTCPWELK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H + + P W++ ++ + + P I+ +L + + G GI + Sbjct: 186 NHKGLYY--RTPNG--PLRWVSEINGQWQDVSAPPIAVSNNGKWL--LGKVLAGQGIMMA 239 Query: 245 PDYIVKDNPNLVRIMEDVITPS--------FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 P +++ + + + E +TPS F +Y Y + K+KA +F+ + + Sbjct: 240 PKWLLNEYLDAEELQELTLTPSVNITSSSDFGIYLLYQKQRYLVPKVKAAVDFLVARIK 298 >gi|330876786|gb|EGH10935.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 266 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 132/272 (48%), Gaps = 16/272 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V SGSFT A+++L LS+ +SR++ LE +G++L R R L +T G Sbjct: 4 FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E + + + +P G LR++ + L L FL Y D+ + Sbjct: 64 SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D +R+ ++ SSLI R++ +I A+P YL P + Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H+ + +G W V G+P I ++ N+ + V G G Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTV 269 I LP +IV + +LVR+++D+ T+ Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTL 266 >gi|78066066|ref|YP_368835.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77966811|gb|ABB08191.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 313 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+ +Y++ P +L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASRNYVEAHGVPQRPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H + G + P D LA + PI P +VN ++ G GI Sbjct: 186 AQH--VCLGMVAPGFQFDEWALAGPNGDEVVPITAP---PFRVNVAEALAVAVREGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP Y + ++VR+M + + +Y YP K++ + +F+ Sbjct: 241 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291 >gi|320181163|gb|EFW56082.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme [Shigella boydii ATCC 9905] Length = 307 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR SF AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRASFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|296389043|ref|ZP_06878518.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 303 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 139/290 (47%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F + G+F AA+ L L ++S+++ I LE +G++L R R ++LT G Sbjct: 4 FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + P G+LR+ LG+ + L EF YP++++ Sbjct: 64 AYYERCVRLLAGLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL +++ +D+ + ADC +R+ + + SSL+ R L + A+ YL+ P + Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H + + DF + +VD R P S + VN+ + + C G G+ Sbjct: 183 ELGGHLAVNYQSPSSGRTADFEF--SVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y V + +L +++ + + PS ++ YP + + +++ F +++ Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290 >gi|58040796|ref|YP_192760.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58003210|gb|AAW62104.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 303 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 9/297 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MSF+ D L F VAR+G F AA LS S +S + LET +G +L +R R ++LT Sbjct: 1 MSFELDDLSAFVAVARAGGFREAARVSGLSASGLSEALRRLETRLGTRLLHRSTRSISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G++L S ++ + + +P+G + + ++ + +L G L FL+ +P Sbjct: 61 ETGARLFERLSPALTEISAALDTVHAQTYQPAGTIHLNVPANVARTVLPGILSPFLIAHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCRE 179 I++ + +++ +DI AD IR + ++ + I T + AAP YL Sbjct: 121 QIRVDVTVEDSFVDILASGADAGIRYEERLEQDMIAIPIGPATQRVLTAAAPSYLSARGR 180 Query: 180 PLSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P EL +H + F P M +F V R + P +Q S ++ L Sbjct: 181 PQHSSELLEHACLRLRFAGGAP-AMWEFEKDEEVIR-LDPPGPLLVQPGSACDLLVETAL 238 Query: 238 -GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI L D++ + L +++D TP Y + L+AF +FI Sbjct: 239 SGLGIVCLFEDWLAPHIRSGALEVVLDDWATPFSGPMLYYSGRRQLPPPLRAFIDFI 295 >gi|28900374|ref|NP_800029.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260362094|ref|ZP_05775090.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] gi|260877328|ref|ZP_05889683.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|260898365|ref|ZP_05906861.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|260902902|ref|ZP_05911297.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|28808685|dbj|BAC61862.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus RIMD 2210633] gi|308085082|gb|EFO34777.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308090523|gb|EFO40218.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308107919|gb|EFO45459.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|308113815|gb|EFO51355.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] Length = 295 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 15/279 (5%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S+IS++I LE ++G++L R R ++ TE Sbjct: 1 MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + + P+G L+I T+ +G L L +FL YPD Sbjct: 61 AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120 Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I +QL L + ++S+D R + + S S L YAAP YL+ Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYGT 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P +++EL KHN++ +G+ + ++ +R + ++ G Sbjct: 179 PQNVEELTKHNILIWGEKPAREIK-------TNRGKRMSLSGNFATTNPEALFHGAKRGM 231 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 GI + + ++KD+ LV I+ DV TVY YP+ Sbjct: 232 GILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPK 270 >gi|124385436|ref|YP_001026863.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126448309|ref|YP_001079850.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|124293456|gb|ABN02725.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126241179|gb|ABO04272.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] Length = 320 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ + LET +G++L R R L LT +G+ Sbjct: 7 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E + P G++RI + + G++ L L EF YPDI + Sbjct: 67 AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D + +D AIR + S L+ RKL M AP YL+ P + Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +LD+HN I P E+ L P L + SI + V G G+ Sbjct: 185 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 236 Query: 242 ALLPDYIVK---DNPNLVRIME 260 A L + V D LV ++E Sbjct: 237 ARLARFHVDADLDAGRLVPVLE 258 >gi|327481604|gb|AEA84914.1| Transcriptional regulator, LysR family [Pseudomonas stutzeri DSM 4166] Length = 300 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 147/295 (49%), Gaps = 28/295 (9%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F + +GS + AA+ S +S+ R ++ LE +G++L R R + LT++ Sbjct: 2 DKLKAMANFVRIVDNGSLSAAADASGQSVASVVRSLAALERHLGVRLLNRSTRRMALTDE 61 Query: 63 GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G++ R+ +E + +E +++ Q+ SV+ G LR+ ++ GQ L + FL Sbjct: 62 GAQYLAWSRRMLAE-FADIE-QRLDAQDGSVR--GLLRLTAPVEFGQRYLAPLVNAFLEE 117 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P +Q++L L+++ + + + D A+R+ + S+L+ R L T + A+P YL + Sbjct: 118 HPQVQVELNLNDQIVPLLDERLDLALRIGH-LPDSTLVARPLGTTRLVTCASPDYLASSP 176 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGE---PRISCLQVNSYLSIMQY 234 + L +H I F + +W DR E PR++C Q+ S Sbjct: 177 PIDTPAALKEHACILFA------AQGRHWYYRDGDREQAEEITPRLTCNQIR---SASLA 227 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 CV G GI L Y V D + LVR+++D + YP +L+ + +++AF Sbjct: 228 CVQGLGITRLMHYQVADELADGRLVRLLKDYEPDYLPIQLVYPHSLQLSPRVRAF 282 >gi|307322609|ref|ZP_07601947.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306891747|gb|EFN22595.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 297 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/299 (23%), Positives = 135/299 (45%), Gaps = 19/299 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F +A SGS T AA +L+ S ++SR ++ LE +VG++L +R R L+E G Sbjct: 5 EDLEAFIHIAESGSLTRAATRLNRSLQAVSRSLTSLEVDVGLQLVHRTTRHSALSEAGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R ++ Q+E PSG LR+ + G + L + E++ YP ++ Sbjct: 65 FYRRVKPAVLEIREAQLEAAGRRTGPSGILRVGAPMLFGPDFLVPIVAEYIESYPQAEVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D++ + D +R+ + S+L ++L + + AP Y P E Sbjct: 125 LSLTDAFVDLASEGIDVVVRIAD-LPDSNLQSKRLGALRRVVFGAPSYFARNGRPEHPAE 183 Query: 186 LDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 L +H I T G+ W +D G+ R+ + N+ +I G Sbjct: 184 LRQHACIVRTIGN------RPGQWAFQID---GKRRMVGVRGSFRSNAMAAIYSAVRSGL 234 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+ P + ++ D + ++++ ++ + E+ + K++AF + + ++ R Sbjct: 235 GLGYSPLWQIRHLVDAGQVEIVLQEFEPKPVPIHALWQESTRPPAKVRAFVDLLAMRLR 293 >gi|320323639|gb|EFW79723.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328278|gb|EFW84282.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 294 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +ET G +L +R R L LT G Sbjct: 4 RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L +L +K +L YP + L++ Sbjct: 64 RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 123 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + ++I R L A+P YL P S QEL Sbjct: 124 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 182 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F P+ P L N + +++ V G+GI L P + Sbjct: 183 HNCLTY-SYFGKSLWEFT---RQQSPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 238 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ ++ D + ++ Y + L+ +F+ Sbjct: 239 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 283 >gi|293608444|ref|ZP_06690747.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829017|gb|EFF87379.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 301 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 16/262 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A ++ S++S+ IS LE +G++L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + L+ EL++S P G++RI T++ + L + F YP I+ Sbjct: 71 YEQGIQILNNLD----ELEQSVTANHMPQGRIRIHTSLSYWTHFLLPCISLFNERYPQIE 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ L ++ I++ D AIR P++SS+L+ R L H +P Y++ P Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGRTQKHYVCSPTYIEKNGYPQHP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H L+ + ++ WL D+ I L++N +I+Q + G+GIA Sbjct: 186 EQLYEHQLLD----VSYQRQNKTWLFKKDDQEITLAPTKVLRINHGEAILQLALAGAGIA 241 Query: 243 LLPDYIVK---DNPNLVRIMED 261 L + VK + LV+I+ED Sbjct: 242 QLNQFQVKKALEQKQLVKILED 263 >gi|260770545|ref|ZP_05879478.1| putative LysR-family transcriptional regulator [Vibrio furnissii CIP 102972] gi|260615883|gb|EEX41069.1| putative LysR-family transcriptional regulator [Vibrio furnissii CIP 102972] Length = 307 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 140/292 (47%), Gaps = 13/292 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR SFT AA ++ ++++++S+ + LE ++ ++L R R ++LT++G +L + Sbjct: 14 FTHIARHRSFTKAASEMGVTRAALSQHLKALEQQLQVRLLNRTTRNMSLTDEGQRLLDIL 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 +E EL ES ++PSG +RI+++ + L++ +L EFL YP I+++L++D+ Sbjct: 74 HPSLTNIEQVVSELNESHIEPSGLIRISSSRTAARLLIEPHLGEFLARYPKIRLELMMDD 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +I + D IRL + + + +P Y K P S ++L+ HN Sbjct: 134 GFTNIVAEGLDAGIRLGVSLDEHMVAVPITPPLTTAIVGSPAYFKQHGIPQSPKDLETHN 193 Query: 191 LITFGDLIPKCMEDFNWLA------TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + + ++ ++ A TV + EP+ + + + Y S++Q + G G+ Sbjct: 194 CLAYRFTSSGTLDHWSLTAPDSDQHTV---VFEPKGNAVFNDDY-SMLQAAIQGVGLVKH 249 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 D V + L R++ P Y P K++ +F+ K Sbjct: 250 IDLWVHGAIQDGRLTRVLTPWCKPFPGFYLYIPSREHMPKKIRVLMDFLIEK 301 >gi|254473151|ref|ZP_05086549.1| transcriptional regulator [Pseudovibrio sp. JE062] gi|211957872|gb|EEA93074.1| transcriptional regulator [Pseudovibrio sp. JE062] Length = 313 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 144/290 (49%), Gaps = 13/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V SG F+ AA + S++ IS+ +S LE E+G++L R R ++LT+ G Sbjct: 6 RIRCFLQVVESGGFSAAARDMGRSKALISKYVSELEDELGVRLLNRTTRQISLTQVGEAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R E+ + + + +Q+ + G+LR++ + L L FL +P +++ + Sbjct: 66 FREAGELLQRFDDLKDAVQQDHREVRGRLRLSAPRSFSEATLGRVLASFLQEHPRVELDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++++ +DI + D AIR+ + ++ SSLI RK+ + + A+P Y + P +L Sbjct: 126 EMEDRFVDIVEEGYDVAIRVAE-LEDSSLIARKIRDVRVVVCASPAYWEAHGMPEKPGDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 N+ D K ++ +L +R P+ P + VNS + + + G G+ Sbjct: 185 --ANMPCIIDTNYKHKTNWMFLENGERFSVPVKGP----MHVNSAKTAVAAALAGLGVVR 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + V + + L+ +ED P +Y YP + K++AF +++ Sbjct: 239 LPIFYVLEELMSGQLIPALEDCEVPGPAMYAVYPHRRHLSAKVRAFVDYM 288 >gi|172063515|ref|YP_001811166.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996032|gb|ACB66950.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 303 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 11/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE + ++L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ + ++ P G +R+ N + L++F YPD+++ L Sbjct: 67 ERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALQDFHARYPDLRVVLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S +L Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRIGELSQINCASPAYLARYGTPRSPDDLP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D G + S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDTGALQTVKMRSVVAVNSSQAYLACCLAGLGLIQ 242 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + ++ +LV ++ + V +P + +++ F +++ Sbjct: 243 APREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNSRHLAPRVRIFVDWL 292 >gi|159184411|ref|NP_353687.2| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139724|gb|AAK86472.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 299 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 19/242 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VA SGS + AA++L S + IS++I LE ++G +LF R R ++LTE G + Sbjct: 7 LEVFASVAASGSMSLAAKELGYSPAVISKRIKRLEEKLGARLFQRTTRQISLTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V LE + + + +G L+++ G+ + +LK F+ +PD+ + L+ Sbjct: 67 ERVLAVLAGLEEAEDFVSGRANTVNGTLKVSAPTSFGRMHIAPHLKGFMERHPDLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ IDI D AIR+ + SSSL+ R+L + A+ Y+ P +I++L Sbjct: 127 LSDEFIDIIEGGYDLAIRIAD-LNSSSLVARRLAPVRRVLCASADYVVAHGMPATIEDLK 185 Query: 188 KHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241 KH +C+ N W ++ P G I L NS I + + G GI Sbjct: 186 KH----------RCLPAHNNDIW--RLEGPGGALSIRPEGMLVTNSSEVIREAVISGLGI 233 Query: 242 AL 243 AL Sbjct: 234 AL 235 >gi|323494873|ref|ZP_08099965.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323310837|gb|EGA64009.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 299 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 8/283 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE +L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVELGSFSKVAEINNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LTSGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPSISGDLILADAVAEFCNLHPGLSVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +P+ Q+ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIEPQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L HN + + E W ++ R+S ++ ++ + + G GIA + Sbjct: 183 LTLHNCLQYAYQTTGASE---WEFKSEQSNYIIRVSGSFSTDNATALRKAALGGHGIAYV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 P +V N LV + + + +Y YP + K+K Sbjct: 240 PRCLVYHDIRNGQLVDLFPEQVGKKLGIYAVYPFTRQPPNKVK 282 >gi|319794740|ref|YP_004156380.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597203|gb|ADU38269.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 291 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 12/247 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L F +VA +G A+ S++++SR+I+ LE ++G++L R ARGL LTE Sbjct: 1 MDLNALSDFALVAMNGGLGKASRASGRSKATLSRRIADLEEQLGVRLIERSARGLKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T H++ +E P G+LR+A+ + Q + EF YP++ Sbjct: 61 GQMLMDRTEGPMHEVADAMTSAREGLSVPRGRLRVASPVLFSQLTMGRISAEFCTAYPEV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ D++ +D+ + D AIR+ P SSL+ R + AAP S Sbjct: 121 SCEVVADDRLVDLVEEQFDAAIRI-NPAPDSSLVGRCFAKDRLVVVAAP----------S 169 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + ++ +D NW R + EP I L+++S+L I + G+G A Sbjct: 170 VPMPKPGKVSPVPGIVSTNFQDGNWTLDDGRLVLEP-IPRLRLSSFLMIRDAAIAGAGAA 228 Query: 243 LLPDYIV 249 L+P I Sbjct: 229 LIPQSIA 235 >gi|326319123|ref|YP_004236795.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375959|gb|ADX48228.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 302 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 123/301 (40%), Gaps = 19/301 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRV AR GS T AA L ++ ++ S + LE +VG++LF R R L +T QG L Sbjct: 9 LRVLVEAARGGSLTAAARALEVTPAAASAMLKRLEAQVGVRLFERSTRALRITAQGGTLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L+ Q + G +R+A DL + LL F+ +P +Q+ L Sbjct: 69 EYAERALELLDEGAGLAQSETGALRGTVRLAAPTDLSRVLLP-RFDRFMERHPGVQLALS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D+ D D A+R + S L+ R L A AAP YL P EL Sbjct: 128 ASDRLHDVRRDAVDLALRYSAELPDSQLVARALHRTRRLACAAPEYLARHGTPRHPSELA 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGSG 240 H I + + W T +R G P + V+ + + G G Sbjct: 188 AHRCIA---MAIAGRREVRW--TFERAPGHPPETVGITLRAERSVDDGALAHAWALAGGG 242 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 I V+ D+ LV ++ + ++TVY P +++A F+ A +W Sbjct: 243 IVYKSRLDVQAHLDSGQLVELLPGWLGQAYTVYAVLPSQRFVPARVRALVEFL---AEEW 299 Query: 298 K 298 + Sbjct: 300 R 300 >gi|76810635|ref|YP_332567.1| LysR substrate binding domain-containing protein [Burkholderia pseudomallei 1710b] gi|126438962|ref|YP_001058046.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|134281239|ref|ZP_01767948.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|226194419|ref|ZP_03790017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|242314530|ref|ZP_04813546.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|76580088|gb|ABA49563.1| LysR substrate binding domain protein [Burkholderia pseudomallei 1710b] gi|126218455|gb|ABN81961.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|134247545|gb|EBA47630.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|225933504|gb|EEH29493.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|242137769|gb|EES24171.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] Length = 349 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ + LET +G++L R R L LT +G+ Sbjct: 36 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 95 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E + P G++RI + + G++ L L EF YPDI + Sbjct: 96 AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 154 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D + +D AIR + S L+ RKL M AP YL+ P + Sbjct: 155 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 213 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +LD+HN I P E+ L P L + SI + V G G+ Sbjct: 214 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 265 Query: 242 ALLPDYIVK---DNPNLVRIME 260 A L + V D LV ++E Sbjct: 266 ARLARFHVDADLDAGRLVPVLE 287 >gi|298487058|ref|ZP_07005109.1| Probable transcription regulator protein of MDR efflux pump cluster [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158411|gb|EFH99480.1| Probable transcription regulator protein of MDR efflux pump cluster [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 13/287 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF +A GSFT AE + + ++R I LE + ++LF R R + LT +G + Sbjct: 6 SMQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRF 65 Query: 67 H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + RV + + ETT + + S G LRI Q +LK F +P+I++ Sbjct: 66 YERVKNNLADLAETTSMFDRNGSTL-RGLLRIDIPAAFSQRSFMESLKGFTQAFPEIELA 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + DCA+R+ + + SSL+ R++ M AAP YL+ P ++ E Sbjct: 125 LGVTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLDE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H ++F L + W L D P+ P + VN + +Q + G GI Sbjct: 184 LAGHCGVSF--LSGQSNRPLPWHFSLNGDDFPV--PPRGGITVNESNAYVQCGLAGFGIL 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P V+ + LV ++E V YP +++AF Sbjct: 240 QAPGITVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAF 286 >gi|254251907|ref|ZP_04945225.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124894516|gb|EAY68396.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 324 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEARAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLNQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L K + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPDDLAKFETLDTPSVDGRHV--FNLIA----PDGTRHLHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|115352291|ref|YP_774130.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282279|gb|ABI87796.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 325 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPDDLARFETLDTPSVDGRHV--FNLIA----PDGTRHLHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIME-DVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + N +R + + P +T V Y + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYG---NALRAGQLSPVMPGWTLPVPQLYAAFVSRQGMPPAVRAFV 292 >gi|134293313|ref|YP_001117049.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136470|gb|ABO57584.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 319 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 S +WD LR F VAR+ + AA++L + ++++R+I LET +G LF + + G TLT Sbjct: 11 SLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALETAMGTLLFDKSRSGGFTLT 70 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + +++ +L + SG +RI +T G L L +F + +P Sbjct: 71 AEGQRLVAYADAMETTVQSACDQLANTGHALSGHVRIGSTEGFGCFFLAPQLAQFRVAHP 130 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ +++ AD AI L +P + ++ KL + YA YL N Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHPPI 189 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S +L +H I++ D + E L ++R + + L+ S ++ + + G Sbjct: 190 ASTDDLARHAFISYVDDLAFSSE----LLYLERAV-PGATAGLRTTSVIAQVFAALQGGA 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ P LV ++ + + + E L+ ++ A +++ Sbjct: 245 LAILPCFMAATQPALVPVLPHDVVVTRCFWLTCREDLRKLRRVTALWDYL 294 >gi|322834695|ref|YP_004214722.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321169896|gb|ADW75595.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 312 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V SGSFT AA +L +S S+IS+ IS LE ++ IKL R R + LTE G Sbjct: 6 RMSIFAQVVESGSFTAAARRLDMSVSAISQTISKLENDLQIKLLNRSTRSIGLTEAGKLY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ H + +L + P+G LRI ++ + QN+L E L YP + + L Sbjct: 66 YQGCRKMLHDVREVHEQLYAFNNTPTGTLRIGSSSTMAQNVLAAMTAEMLTEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL +L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFCTRLGSMPMVVCAARSYLAQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233 P M +F+WL RP E RI+ N ++++ Sbjct: 181 ------------PADMVNFSWLEYSVRPDSEFELIAPEGVSTRITPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G GIA +P Sbjct: 229 WLKAGVGIAYVP 240 >gi|264678676|ref|YP_003278583.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262209189|gb|ACY33287.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 308 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 10/297 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 W+ R + V GS + AA + ++Q ++ R + LE +G+ LF R GL TE Sbjct: 17 IGWELYRSYLGVLEEGSLSGAARAMGIAQPTVGRHVDALEKALGVTLFTRSQMGLLPTEA 76 Query: 63 GSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L ++ + E Q S ++ G +R+ + +GQ +L L + +P Sbjct: 77 ALALKPFAQTMHSAAAALRRVAESQGSGIQ--GTVRVTASEVIGQEVLPPILAQLQDTHP 134 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L+L ++ D+ AD A+R+ +P Q LI R++ + + +A YL P Sbjct: 135 GLTVELVLTSRVQDLLQREADIAVRMTQPRQ-EQLIARRIGVMPLGLHAHKRYLDKHGTP 193 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ +L +H LI F + P F A PI ++ ++ ++ M G G Sbjct: 194 ASLADLAQHALIGFDEEAP-----FVRAARKAFPIWSRENFAVRTDNDMAQMALIRAGCG 248 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 I + + +PNLV I+ I S + E L+N K + + +D+ Sbjct: 249 IGVCQVNLAARDPNLVNILPGSIPLSLETWLTMHEDLRNNPSCKVTFDALLKGLQDY 305 >gi|260461471|ref|ZP_05809718.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259032541|gb|EEW33805.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 302 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 8/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ ++ F VA +GS + AA +L SQ ++ R IS LE +G+ LF R G LTE Sbjct: 4 IDWNLIKSFVTVAETGSLSAAARKLSASQPTLGRHISELEQALGVTLFRRGRSGYALTEA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L V + + Q S G +RIA + + +L + + P I Sbjct: 64 GATLFERGKTVSEQASAFSLLAQGSVEAIEGTVRIAASEVVAAYVLPQMMARLDIEEPGI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++++ N+ ++ AD AIR+ KP Q + L+ RK+ I + A AA YL PL Sbjct: 124 EVEIVASNQVENLLRRDADIAIRMVKPAQ-NELVARKVCDIPLCACAAISYLDRRGRPLE 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +L H LI F D + + F V I R S + ++ + + + G+GI Sbjct: 183 PGDLVDHALIGF-DRSDEMIRGF-----VQAGIPVTRNSFRFRADNQMVLWEAVRAGNGI 236 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + + + +P + +++ + P+ V+ ++ + +++ +F+ Sbjct: 237 GLGQEPLAERDPLVEKVLPGLPLPALPVWLAMHRDVRTSVRIRRVADFL 285 >gi|254500724|ref|ZP_05112875.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222436795|gb|EEE43474.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 314 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + A +++LS + +S++I LE ++G +L R R + +TE G + Sbjct: 7 MEIFARVVSAGSMSAAGREMNLSPAVVSKRIRRLEEKLGSRLLQRTTRQIAMTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S K G L++A G+ + ++ +FL PD+ I L Sbjct: 67 ERVIAILASVEEAESFVSRGSAKARGHLKVAVPTSFGRLHIAPHVGKFLANNPDLSINLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186 L + +DI + D AIR+ + + SSL+ R+L IH A+P Y++ P SI + L Sbjct: 127 LSDDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPIHRILCASPEYVEKYGTPQSIDDLL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + P + N + TV S ++ NS + + + G GIAL Sbjct: 186 ANHVTLAAANQDPWRLAGPNGIETVRTQ------SPVKTNSSEVVRECLLSGVGIALRST 239 Query: 247 YIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 + + P L ++ P + +Y YP K++ F +F+ Sbjct: 240 WDI--GPELREGKLQILLPEYRASKDVGLYAVYPSRQFLPAKVRVFIDFL 287 >gi|190572834|ref|YP_001970679.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010756|emb|CAQ44365.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 17/279 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F A +GSFT AAE+LHL+ S++ + I+ LE +G +LF R R L LTE G + Sbjct: 10 IEAFVATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGEGFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R V +L + L + P G+LR+ G+ + L + +P + Q+ Sbjct: 70 RTCVRVLGELADAESVLVSHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPQLHPQVT 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186 ++ D++ D D A+R+ P + + +L+ + A+P YL +P S EL Sbjct: 130 FSDRFSDLAEDGVDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLLRHGQPRSAAEL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSIMQYCVLGSG 240 H+ + FG + D G R + LQ V S + + G G Sbjct: 190 AGHDGVLFG----RADGSIGPWQVAD---GRQRSTPLQARARLVVGSAEAQVAAVEAGFG 242 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 IA L ++V D +LV I+ + + +P+ Sbjct: 243 IAQLATWLVDDALARGSLVSILPSLDCRGLPLRLLWPQG 281 >gi|162456046|ref|YP_001618413.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161166628|emb|CAN97933.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 345 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D L++F VA GSFT A E L + ++ +S ++ LE E+G +L R R + LT Sbjct: 43 MTVDVGSLKIFVKVAELGSFTRAGEHLGMPKARVSLRLKALEAELGTRLLQRSTRVVRLT 102 Query: 61 EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G +L + LE ++ + +++ G++RI ++ ++++ L E L + Sbjct: 103 PDGEEL--LPRARRLALEADELGAMFQAARGLRGRVRIDLPVNFARDVIIPRLPELLARH 160 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P++++ L ++ ++ + DC +R+ P L+ R+L + M A+P YL+ Sbjct: 161 PELEVLLSTTDRRVEPLREGFDCVLRVGAP-GGDGLVGRRLGLLRMMNCASPSYLRQYGT 219 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLG 238 P I++LD+H L+ + + F + D E P S + VNS + CV G Sbjct: 220 PRRIEDLDRHLLVHYSTTLGAEAPSFEY--PHDGGYREWPMRSVVTVNSADAYFAACVAG 277 Query: 239 SGIALLP 245 GI P Sbjct: 278 LGIIQAP 284 >gi|34496170|ref|NP_900385.1| transcriptional regulator PtxR [Chromobacterium violaceum ATCC 12472] gi|34102024|gb|AAQ58391.1| transcriptional regulator PtxR [Chromobacterium violaceum ATCC 12472] Length = 312 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 8/290 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + L++F VA +G FT AAE+L ++++++S Q+ LE ++G LF R R + LTE G Sbjct: 18 NLEGLQIFVAVAEAGGFTAAAERLGMTKANVSLQVGRLEAQLGATLFTRTTRRVKLTEAG 77 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L+ L ++ + + SG LR+ + + +F+ +P +Q Sbjct: 78 QALYLDAQPALAALRDALLQAGHGAAELSGTLRLTAPVSHMAESVAPAATQFIRRHPGLQ 137 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +D+ + D AIRL ++ SSL KL A+P YL+ P Sbjct: 138 LELHAIDRMVDLVAEGMDLAIRL-GTLRDSSLRALKLGEFAQQLVASPAYLRERGMPAHP 196 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL H+ + L F + + R+ ++V+S S+ + G+G++ Sbjct: 197 GELAGHDWVALTLLKTPLTWRFAGAGGAEETV---RMRARIKVDSAASLRSLLLAGAGMS 253 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +L + V+++ L+ ++ P VY +P +AF F Sbjct: 254 VLDSFSVQEDLRQGRLIHLLPQWTLPKGGVYAVFPPGRHAPAAARAFVEF 303 >gi|53719562|ref|YP_108548.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|167816079|ref|ZP_02447759.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|52209976|emb|CAH35949.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ P+ W P + N + + G+GIAL Sbjct: 184 ADLCAHRCIVLGEQ-PR----VEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296 Query: 298 KF 299 ++ Sbjct: 297 RW 298 >gi|330816140|ref|YP_004359845.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327368533|gb|AEA59889.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 321 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 125/293 (42%), Gaps = 14/293 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 + VF VA SGSF+ AA L S + +SR +S LE + +L R+ R + LTE G + Sbjct: 6 NMSVFVRVAESGSFSGAAAALQRSTAQVSRAVSDLEAHLNTRLLNRNTRRVALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 R ++ LE + EL + P G+LRI + G + + + EF+ YP I I Sbjct: 66 LRHCRKILADLEFAEAELLTDQPPQVPRGQLRIHSMTSFGTHYVMPLVAEFMRAYPQISI 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + +DI + D + + ++ R+L I A+P YL P + Sbjct: 126 DLTLSQRSVDILNEMYDGTLTISDMPAGDGIVSRRLGEISCIVCASPDYLAAHGVPRTPA 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSG 240 +L H + L M +W P G ++ Q VN S+ G G Sbjct: 186 DLQAHTCL---HLRSPGMPFSDW--QFSGPAGIEQVRFEQHPFVVNVAASMAVAVEQGMG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +LP I L R++ PS V +P + + +L A+ F+ Sbjct: 241 VGILPAPIALGGLRKGTLRRLLPAYTMPSMLVELAHPARAQLSPQLGAWIAFL 293 >gi|299069657|emb|CBJ40930.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 329 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V GSF+ AA L + +S +SR+++ LE +G++L R R + +T+ G Sbjct: 16 DLNDLVLFAAVVTHGSFSAAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 75 Query: 64 SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 S + EV + +E+ E + +PSG+LR++ + + L L +FLL P++ Sbjct: 76 SAFY-AQCEVMTQAARAALEVAEHAGERPSGRLRVSCPVGVAHAFLAPVLSKFLLAQPEV 134 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L + N+ +D+ + D A+R+R + S+L+ R ++ A+P ++ S Sbjct: 135 RLELDVTNRRVDVIGEGYDVALRVRSTLDDSNLVVRTFTASNLVLAASPSFVAGHGPFDS 194 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + L + E W ATVD + + + Q + Sbjct: 195 AESLQGVAGVG---FGGVGGERARWRLTSPEGATVDIDY----VPAFVTDDLFLLGQVAM 247 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A LP + D + LV ++ D P ++ +P G + A R FI Sbjct: 248 AGVGVAQLPVNLCADAIRDGRLVVLLPDHRQPVHQLHAVFP---SRRGLVPAVRAFI 301 >gi|167839047|ref|ZP_02465824.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 6/290 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V GSF AA++L +SQS+I+RQ++ LE ++G +L R R L++T+ G Sbjct: 7 MRSFVQVVDDGSFVRAADRLGISQSAINRQVTLLEQQLGERLLIRKTRELSVTDFGRSYC 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ KL+ + + + +P+G LRIA L L L ++ Y D+ + Sbjct: 67 ARIRDILKKLDALERAVLAPTRRPAGTLRIAVLASLSLEHLASCLYDYCKTYSDVLPMPV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D I R + +SL+ R + A A+P YL EP ++L Sbjct: 127 LVDRPTDLVREGYDVGIIDRSSVSCTSLVVRTIYNTPRIACASPAYLTRHGEPTRPEQLT 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H +T + V P G + C L VN+ ++Q + G+GI + Sbjct: 187 DHVCVTMSAARVSGTRHTHSEMLVTGPDGSTMLKCRPALVVNNVDFLVQMILSGTGIGFV 246 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +V+ L ++ +P T+ YP K++ F + + Sbjct: 247 EPALVRSAIQKGTLKPLLPGYSSPGPTICVAYPSRHHLPPKVRTFVDHLL 296 >gi|167570187|ref|ZP_02363061.1| transcriptional regulator [Burkholderia oklahomensis C6786] Length = 313 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + E ++ +PSGKL++ LGQ+ + + YP++ + L Sbjct: 66 LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYQQRYPEVHVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ + + + S L+ ++L A+ Y++N P ++L Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGVTFSVVCASRGYIENHGAPQRPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H + G + P D W + P GE ++ +VN ++ G GI Sbjct: 186 ANH--VCLGMVAPGLYWD-EW--KLMGPRGEESVTLAPPPFRVNVAEALAAGIREGMGIG 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y N + VR+M + + +Y Y A R ++ K R W Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|146308226|ref|YP_001188691.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576427|gb|ABP85959.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 309 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 136/289 (47%), Gaps = 12/289 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V SGS + AA +L ++S +S++I LE +G L R R LTE G Sbjct: 6 EMHAFVAVVDSGSISEAARRLGTAKSMVSQRIQQLEKRLGCILLER-GRQTRLTEAGEVF 64 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R + + +E + + S G LRIA + G L L F YP++ + + Sbjct: 65 YRHCTAILADIENAENAVLTSQSSVRGNLRIAAPMAFGMRYLTPILASFAKQYPELYLDV 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQE 185 D++ +++ + D A+R+ + + SSL+ K++T + H A+P YL P + Q+ Sbjct: 125 EFDDRRVNLHEEGFDAAVRIGE-LPDSSLVA-KIITPNRHIICASPDYLDAHGTPRTPQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +H + + + P M W V+ + R+ C ++ N +M G G+A+L Sbjct: 183 LAQHFGMLYVNREPHGM----WTLPVNDTLESFRVRCRMRTNCGHQLMDAAKAGLGLAIL 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + L+ ++E + Y ++ + + KL+A F+ Sbjct: 239 PTFLAAQAIVDGELIEVLEPYAPRGGNISVVYRQSQRASPKLRALSGFL 287 >gi|330821046|ref|YP_004349908.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373041|gb|AEA64396.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 329 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 15/243 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F AR SFT A ++L ++QS++SRQ+ LE ++ ++LF+RH R L+LTE G Sbjct: 14 DFLRGFESAARHLSFTRAGQELDITQSAVSRQVKALEEQLSVELFHRHIRALSLTEHGRV 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + S ++E V+ S + ++TT+ L L F +P+I + Sbjct: 74 FYAAISGALAEIEAAIWSFSSGGVRRS--ISLSTTVPFAALWLIPRLGSFTTRHPEIDVH 131 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + D+S D +R P + S R L H+ A A+P R P ++ Sbjct: 132 VSTARESEDLSRKRLDLVVRF-VPARMSLAQARPLFHEHVVAVASPALAATLRAP---RD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEP---RISCLQVNSYLSIMQYCVLGSG 240 L++H L+ D +++ WLA + +G P ++ L Y ++Q + G G Sbjct: 188 LERHVLLHVAD----AGDEWPWLAWKSFLSMLGVPPLRQMRTLHFTQYDQVIQAALDGHG 243 Query: 241 IAL 243 +AL Sbjct: 244 VAL 246 >gi|325277495|ref|ZP_08143098.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097382|gb|EGB95625.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 277 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 133/277 (48%), Gaps = 16/277 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V +GSFT AA++L +S+ S+SR++ LE +G++L R R L T G Sbjct: 4 YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEARLGVRLLNRSTRRLDATPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + +++ + ++ + G LR++ + L L EFL L+ + + Sbjct: 64 QYYQSAMRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMAHLGCLLTEFLQLHAQVDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ SSLI R++ + A+P YL P + Sbjct: 124 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIADVQRVYCASPAYLAARGVPARPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240 +L H+ + +G W R G+ + ++ N+ + + G G Sbjct: 183 DLAGHDCLPYGH-----SRQVQWQF---RQAGKAQAIQVAGRMRANNGEILRDAAIAGMG 234 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 + LP +IV + LV +++D P+ + YP Sbjct: 235 VTYLPTFIVGQALADGRLVTVLDDWRPPALQLSAVYP 271 >gi|269102362|ref|ZP_06155059.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268162260|gb|EEZ40756.1| transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 9/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF + + SFT AA+ L +S++ +S+QI LE +G++L R R LTE G Sbjct: 7 QMVVFNALTKQQSFTKAAQLLDISRTQVSKQIQLLEERLGVQLVQRTTRSFALTEAGKAF 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + EL G L++ N L + EF YP +++++ Sbjct: 67 AAHCANIVAEINEAESELLSDCDTLQGTLKVGVAQSFASNHLAPYIAEFHAQYPQLKLEM 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +DI + D I + + R LV H A+P YL P ++L Sbjct: 127 SLFDHRVDIIAEQLDLWIGMMDS-PPEGFVARHLVDCHFVLAASPEYLALHGVPYHPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN IT+ + +D W D + ++S +V+S +I + G+GI L Sbjct: 186 KEHNCITY---FSRERKDNVWSFKKDDEALQIKVSGNYRVDSADAIRDATLTGNGIGYLA 242 Query: 246 DYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y++KD L+R++ D + +Y YP K++AF +F+ Sbjct: 243 TYLLKDELRQGKLIRLLPDWDLNQYMPLYAVYPRHKFLPIKVQAFIDFV 291 >gi|149915438|ref|ZP_01903965.1| transcriptional regulator, LysR family, putative [Roseobacter sp. AzwK-3b] gi|149810727|gb|EDM70568.1| transcriptional regulator, LysR family, putative [Roseobacter sp. AzwK-3b] Length = 293 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 26/304 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R + VAR G+ + AAE L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 3 NWDEIRTAFNVARIGTVSGAAEVLGVHHATVIRHIDALEQRLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + ++ SG+L + T++ +LL L EF +PDI Sbjct: 63 EDLLRVAQATDDQFSQLVGRIKGRGNDVSGEL-VVTSLGGLSHLLVPVLTEFQAEFPDII 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQ----RKLVTIHMHAYAAPHYLKNCR 178 ++ + ++ + A AIR P Q +++Q +K+ AYAA H L Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAVPDQPDNVVQPFFEQKITLFASDAYAARHGL---- 177 Query: 179 EPLSIQELDKHNLITFGDLIPKCMED-FNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P S E+ H + D P F W+ T+ P V++ ++ Sbjct: 178 -PQSEAEMSGHRFVGADD--PNSRAPFFRWMRETI--PAANIVFRSGDVHAQRRAIKQ-- 230 Query: 237 LGSGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+GI + ++ L+ ++ ED P + V L T K+++F +F+ + Sbjct: 231 -GAGIGFVSRLQAREMGGLIEVVPPREDWAAPLWLVTHM---DLHRTTKVQSFLSFLKNR 286 Query: 294 ARDW 297 ARDW Sbjct: 287 ARDW 290 >gi|288961631|ref|YP_003451941.1| transcriptional regulator [Azospirillum sp. B510] gi|288913911|dbj|BAI75397.1| transcriptional regulator [Azospirillum sp. B510] Length = 296 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/297 (22%), Positives = 129/297 (43%), Gaps = 16/297 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +R+F VA +GSF A +HLS +++R ++ LE +G +LF R R + LTE G Sbjct: 4 WQAMRIFAKVAETGSFAETARLMHLSAPAVTRAVASLEDVIGARLFVRTTRSVKLTEAGI 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + S P+G L I + GQ + + EFL ++P ++ Sbjct: 64 RYFEDCRRILADIAEAEAAAGGSYANPAGTLAITASALFGQMHVLPIVTEFLDIHPAMRA 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ ++I + D A+R+ + S K+ T+ +P Y + PL+ Sbjct: 124 RTLFIDRPVNIVEEGVDVAVRIGH-LPDSGFTAVKVGTVRRVICGSPAYFERHGAPLTPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241 +L H + W + R G+ R++ LQ N+ + + G G+ Sbjct: 183 DLRNHRI---------AASTSAWASPEWRFAGDQRVTIDLVLQCNTNEAAIATAREGWGL 233 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + Y + + +L ++ + P ++ YPE K++AF + + R Sbjct: 234 TRVLHYQIGPALLDGSLRIVLSEHEEPPLPIHVLYPEGRHAPAKVRAFVDLAVARLR 290 >gi|157376747|ref|YP_001475347.1| LysR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319121|gb|ABV38219.1| transcriptional regulator, LysR family [Shewanella sediminis HAW-EB3] Length = 316 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 11/289 (3%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GSFT AA+ ++ +S IS+QI LE E+ ++L R R L+LT G+++ + + L Sbjct: 17 GSFTKAADLRNVDRSVISKQIGKLEDELDVRLLNRTTRSLSLTTAGAEMVKQAVSLREML 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 T Q +P G LRI+++ G+ +Q ++ F Y I ++L L+++ +D+ Sbjct: 77 SETSRIAQHYHSEPRGTLRISSSTFFGRQYVQKAVEVFQRKYHQIHVELRLEDRVVDMVS 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 + D R+ +P + SSL+ RK+ + A+P +LK +EPL+I+ L++ + Sbjct: 137 EGFDIGFRIGEP-KESSLVARKIARNRLLIVASPDFLKRHKEPLTIEALEQLPTAVYS-- 193 Query: 198 IPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253 P + D + ++ +VN ++ + G+ +A++ +++ Sbjct: 194 APGILLDKIKYFDAEGEAAHIQLDIAYRVNDVEMMVMAALSGNMLAVVTAQTIENEVLEG 253 Query: 254 NLVRIMEDVITPSF-TVYFCYPE---ALKNTGKLKAFRNFIFLKARDWK 298 LV IM DV F T Y YP A+K T ++ R I W+ Sbjct: 254 KLVPIMTDVNLADFGTFYAVYPHREPAIKTTLFIETLREIIGADIPVWE 302 >gi|238758281|ref|ZP_04619459.1| Transcriptional regulatory protein [Yersinia aldovae ATCC 35236] gi|238703404|gb|EEP95943.1| Transcriptional regulatory protein [Yersinia aldovae ATCC 35236] Length = 284 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 6/278 (2%) Query: 13 VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72 +V R SFT AA +L +SQS++S I GLE + ++L R R + TE G +L Sbjct: 1 MVVRERSFTKAAAKLGVSQSALSHSIRGLEDRLELRLLTRTTRSVAPTEAGERLANSLGP 60 Query: 73 VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132 + ++E+ L E +P+G +RI ++L LK FL+ Y DI +++ +DN Sbjct: 61 RFAEIESELNALSEMRARPAGNIRITAGEHAVDSILWPVLKSFLVEYSDINVEITVDNTL 120 Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192 DI D IRL + + + R + M +P YL P++ +L H I Sbjct: 121 TDIVTGRFDAGIRLGEQVAKDMIAVRIGADMSMAVVGSPSYLAKYDIPVTPADLQNHRCI 180 Query: 193 TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251 +P + W R + L NS + +G G+ ++P VK Sbjct: 181 NM--RLPTMDGLYAWEFEKAGRELKVRVDGQLTFNSLRQRIDAATIGFGLTMVPADTVKT 238 Query: 252 ---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + +L+R++E+ P Y YP ++T F Sbjct: 239 EIADGSLIRVLEEWCEPFPGYYLYYPSRRQHTTTFSLF 276 >gi|209548055|ref|YP_002279972.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533811|gb|ACI53746.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 283 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 19/247 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W L++F +AR G+ AA L L+Q ++ R++ LE VG LF R G LTE+ Sbjct: 1 MEWSDLKIFLAIARFGTLGAAARSLRLTQPTMGRRLRSLEASVGQTLFQRTTEGFVLTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + + + L S + G LR++++ G ++L L EF L+P + Sbjct: 61 GAAVLAGAERIEEETLAMERILAGGSRQLGGFLRLSSSDWFGAHVLSPVLAEFSQLHPKV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY---AAPHYLKNCRE 179 ++L+ D++ + + AD R+ +P + +I RKL+ I Y APH Sbjct: 121 VVELLTDSRLLSLPRREADLVFRI-QPFTEAEIISRKLIHIKYGLYIRRGAPHPRAFDGV 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238 + +D+ FGD M D WL + PR ++ NS C G Sbjct: 180 GARLVTMDQ----AFGD-----MPDAGWLQRL-----LPRAEIAMRSNSRDVQATLCANG 225 Query: 239 SGIALLP 245 +G+A+LP Sbjct: 226 AGLAVLP 232 >gi|148553478|ref|YP_001261060.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498668|gb|ABQ66922.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 5/197 (2%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 + D D+ R +F VA GSF+ A +L L+ S++SR I +E +G++L R R L Sbjct: 5 IGGDTDRARALELFAAVAAEGSFSAAGRKLGLTPSAVSRAIDRIEARLGVRLLLRTTRAL 64 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT +G + L+ + + + P G+LR++ ++ G+ + L +F+ Sbjct: 65 TLTVEGQAYLGAARRILADLDDAEQAIADQGA-PRGRLRVSVSLAHGRQCVVPLLGDFVR 123 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 L+P I + + L ++ +D++ AD AIR P+ S+L RKL A+P YL Sbjct: 124 LHPHILVDVGLTDRVVDVAGGQADVAIRF-GPLADSALTARKLGETRRVIVASPDYLARH 182 Query: 178 REPLSIQELDKHNLITF 194 P ++L H + F Sbjct: 183 GTPSVPEDLHDHVCLNF 199 >gi|150376589|ref|YP_001313185.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031136|gb|ABR63252.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 297 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 127/279 (45%), Gaps = 17/279 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F VAR SFT AA L SQS++S I LE +G++L R R + TE G Sbjct: 5 DMKDLLWFLEVAREQSFTKAAAALGTSQSTLSYTIKQLEARLGVRLLTRTTRSVATTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + ++E L KPSG +R+ + Q + L L YPDI+ Sbjct: 65 ERLFQSLAPRFQQIEADLAALVAFREKPSGTVRLTLSDHALQTTVWPKLSRVLSDYPDIR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L DN +I + D +RL + + + R + A A+P Y P + Sbjct: 125 LELYSDNGMSNIVEERFDAGVRLGESVDKDMIAVRISPDWRLRAVASPEYFTKHGIPTTP 184 Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237 Q+L H I T+G ++W D R+ L NS ++ ++ + Sbjct: 185 QDLVGHVCINMRQATWGGF-------YSWEFEKDGRELRVRVDGQLSFNSSITQVEAALE 237 Query: 238 GSGIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273 G GIA +P+ +V+++ + R +++D P FT Y Y Sbjct: 238 GYGIAYVPENLVEEHLAVGRLRAVLDDWSQP-FTGYHLY 275 >gi|115361082|ref|YP_778219.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286410|gb|ABI91885.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 299 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 23/283 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR GSF AA ++++SR+++ LE + ++LF R +RG+TLT++G L+ T Sbjct: 9 FNLVARHGSFGEAARAAGRPKATLSRRVTELENSLALRLFERGSRGVTLTQEGRALYERT 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L + + +P G+LRI+ + + + F L YPD+++++ ++ Sbjct: 69 GALLAELADSASAIASRGERPHGRLRISAPMLFSHFAMGKLVATFALKYPDVRVEVTTED 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQR-----KLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D+ + D IR+ P SLI R +LV + A A P + P ++ Sbjct: 129 RPVDMIDEGYDLVIRV-NPDPDESLIGRVFLRDRLVVVATPALARPS--GDAAAPAVVRG 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 D + D A R EP +++S + + LG G A LP Sbjct: 186 TDDR----------RAAWDVTGPAATSRIAIEP---VARLSSLIMVRDTVRLGLGAACLP 232 Query: 246 DYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286 +V + ++ DV P ++ YP + ++ AF Sbjct: 233 VSLVSGDLAAGTLVSWGDVPGPDIALWALYPSRRLLSARVSAF 275 >gi|323494653|ref|ZP_08099756.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio brasiliensis LMG 20546] gi|323311086|gb|EGA64247.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio brasiliensis LMG 20546] Length = 294 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF AA LS + I + +S LE +G +L +R R +LTE G + Sbjct: 7 MKVFAYVVEHGSFRSAAHHFDLSATMIGKHVSFLEQSLGTQLIHRTTRKQSLTEAGKIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +Q +P G +++ + G+ +L + +FL YPDI ++LI Sbjct: 67 QECHRIIEDITNAENLIQTLVNRPIGTVKVNCPVTYGKKVLAPVVADFLAQYPDINVELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID AD IR+ + + SSL+ R+L M AAP YL + S+ +L Sbjct: 127 LDNNLIDPFRSEADVIIRIGELV-DSSLVARRLGDYQMTYCAAPEYLDKYGKIDSLDDLS 185 Query: 188 KHNLITF 194 +H+ + F Sbjct: 186 QHSCLGF 192 >gi|319792995|ref|YP_004154635.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595458|gb|ADU36524.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 20/296 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSF+ A+QL L +S++S+ I+ LE + IKL R R +T T G + + Sbjct: 7 MRAFVRVVDTGSFSRTADQLALPRSTVSKLITDLEKHLNIKLMQRTTRAVTPTSDGIEYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++++ + ++ VKPSG LRI +LL L +F YP+I + + Sbjct: 67 GHAMRWIAEMDSVESAVRGKKVKPSGHLRIDAPAVFANSLLIPELPDFHREYPEITVAVG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ + I + DC IR + + +++ R++ + AAP YL P S ++L Sbjct: 127 ISDRPLKIVEEGVDCVIRAGR-LDDMAMVGRRVTELQYVTCAAPAYLDCKGIPSSPEDLQ 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRI---SCL-QVNSYLSIMQYCVLGSG 240 ++ F P+ L +R G R +C+ N + + + G G Sbjct: 186 LNHAAACYFFSTGKPE-------LLIFER--GNERFEIGNCVFSTNEGNGLKEMLLAGLG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + IV+ D+ LV ++ED P+ + YP +LKAF +++ K Sbjct: 237 VGQHFRRIVQPYLDSGELVAVLEDWSRPAMPFHILYPPNRHQNARLKAFADWVVQK 292 >gi|330816505|ref|YP_004360210.1| putative transcriptional regulator [Burkholderia gladioli BSR3] gi|327368898|gb|AEA60254.1| putative transcriptional regulator [Burkholderia gladioli BSR3] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++ F VA +GSF+ AA +L + S++SR I+ LE +G +L R R L L+++G + Sbjct: 11 DEMATFVKVAEAGSFSEAARRLGSTPSAVSRSIARLERALGTRLILRSTRRLRLSDEGLE 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R E+ + + S +P+ +RI+ LG+ L+ ++ +FL +P + + Sbjct: 71 ALRHAGELVAAAKAVMSLAERRSAEPADTIRISAPRALGRFLIHPSIPDFLAAHPAVDVV 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD++ +D D D R+ L+ RKL+ I A P YL P +E Sbjct: 131 LKLDDRQVDPVDDQVDIVFRITDD-PPPGLVGRKLMRIEHVVCATPAYLARHGRPAHPRE 189 Query: 186 LDKHNLITFGD 196 L H IT + Sbjct: 190 LAAHGCITLSE 200 >gi|312961408|ref|ZP_07775911.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311284303|gb|EFQ62881.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 267 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 9/270 (3%) Query: 27 LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86 + +S S+I + ++ LE +G++LF+R R + LT +G V ++LE ++EL Sbjct: 1 MGVSSSAIGKSVARLEQRLGVRLFHRSTRSINLTAEGMLFLNRCQRVLNELEAAELELSS 60 Query: 87 SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146 +S +P GKLR+ ++ L L L F YPDI ++L ++ +D+ + D +R Sbjct: 61 TSSEPRGKLRV--SLPLAGQFLFTLLSSFAKRYPDIHLELDFSDRLVDVVEEGFDAVVRT 118 Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206 + + S L+ R+L AP Y + P+ +L H+ + + +P + Sbjct: 119 GE-LNDSRLVARRLGAFRFLLVGAPAYFQAQGTPVDASDLSNHDCLLY--RVPSTGKLER 175 Query: 207 WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDV 262 W G + + L N+ + + G GIA LP++ VK ++ L ++ Sbjct: 176 WPLPDKSHNGMQDLRAVLVCNNIDMLFNAAMQGRGIACLPEFAVKEALESGELQAVLTQE 235 Query: 263 ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 +T + +P T KL+ F +FI L Sbjct: 236 VTRTIHFSVLWPPNRFITPKLRCFVDFISL 265 >gi|94312798|ref|YP_586007.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356650|gb|ABF10738.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] Length = 289 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 13/250 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ F AA+ L + S++SR+IS LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVKAKGFRSAADVLDMPSSTLSRRISALEKAIGLRLLHRTTRKIELTEAGRI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L +P G LR + +D L + EF YP + Sbjct: 65 YFERCKRIVGDARLAHEQLGTMLAEPVGVLRASFPVDFAVTYLAPLIAEFAGRYPGLSFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR +P + S LI R+L + + YA+P Y+K EP + + Sbjct: 125 FDLTPRRVDLVSEPFDVAIRAGEP-EVSQLIARQLASFRTYLYASPGYIKRAGEPRAPAD 183 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L+ H + G ED T P+G S +NS + L GI Sbjct: 184 LNHHECLGIQRGGAWTLHRGED-----TTTIPVG----SRFTLNSVGMARRLAALDMGIV 234 Query: 243 LLPDYIVKDN 252 L+ + IV D+ Sbjct: 235 LMAEAIVADD 244 >gi|319761434|ref|YP_004125371.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|317115995|gb|ADU98483.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] Length = 318 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 3/188 (1%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R F VAR +F AA++L L+QS++SRQI LE EVG+ LF RH R + LT G +LHR Sbjct: 18 RAFLAVARHLNFRAAADELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTGAGVQLHR 77 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + +L+ ++++ + + S + IAT L ++EF +PDI I++ Sbjct: 78 AVAPALDRLDAAVRQVRQMAGRRS--VAIATWASFASMWLIPRMEEFQCAHPDIDIRIDT 135 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + +D+ D A+R P S+ +R L + A+P LK+ ++ + Sbjct: 136 SDSVVDLDTADVDLALRWATPGGSAPGAER-LFGEQLAVVASPWLLKSMPPVRQPADVAR 194 Query: 189 HNLITFGD 196 LI GD Sbjct: 195 FALIEAGD 202 >gi|163856083|ref|YP_001630381.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163259811|emb|CAP42112.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 DWD LR F VAR+ + AA +L + ++++R+I LE E+ LF + + G LTE Sbjct: 2 LDWDSLRYFLEVARTQRVSAAARRLGVEHTTVARRIRALEAELDSLLFEKSRSTGFVLTE 61 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L ++ ++T + L SG LRI T G +L +F YP Sbjct: 62 DGQRLFVYAEQMESAVQTARENLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ + + +S AD AI + +P Q + KL + Y P YL Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLRLYGTPGYLARHAPIA 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L H I + D + E +L + + + R+ L+ S ++ + G + Sbjct: 181 TRADLAGHTFIGYVDEL-LFSERLRYLEDL---LPDSRV-VLRSTSVVAQYHAALQGRSL 235 Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +I + LV ++ED IT SF +Y C+ E L ++ +F+ Sbjct: 236 AILPCFIAAQDARLVPVLEDDIAITRSFWMY-CH-EDLHKLKRMSVLWDFM 284 >gi|163855485|ref|YP_001629783.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163259213|emb|CAP41513.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 323 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 14/294 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F ++GSFT AA L L++S++ + ++ LE +G++L +R R L T++G + Sbjct: 26 AFVSAVKTGSFTAAAASLGLTRSAVGKSVARLEARLGVRLMHRTTRKLNPTDEGLVVFDR 85 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S++ L+ + + KP G LR+ + GQ + L ++ +P IQ + Sbjct: 86 WSQILEDLDEVDATMAQRRGKPGGILRLTAPLSFGQRHILPVLNAYVKTWPQIQADVWFT 145 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ ID+ + D A+R+ + ++ R + A+P YL + P + +L +H Sbjct: 146 DRYIDLIEEGIDVAVRIGGIKDDARVLSRTIGGQQFVTCASPGYLADRGVPATPADLAQH 205 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + I F W D I G R + ++S ++ + + G G+ LP Sbjct: 206 DTIFF----LSGQRPMPWRFLHDGAIEVCDGPGR---MNIDSSEALREAALSGFGLIHLP 258 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 YI + +LV ++E P+ + YP + + + F + + + RD Sbjct: 259 TYITGKDLQRGDLVEVLEAYRPPADPIRLIYPSKRHLSPRTRTFIDLLVDQWRD 312 >gi|330967620|gb|EGH67880.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/301 (24%), Positives = 139/301 (46%), Gaps = 33/301 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF VAR SF AA +L +S + +S+++ LE +G+ L +R R +++TE G + Sbjct: 7 DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNIGVVLLHRSTRQVSITEDGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ E+ +PSG LR+ ++ LG+ + L E YP + I+ Sbjct: 67 VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARYPKLDIR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + L R L + A+P Y++ PLS+ E Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGVPLSLAE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSI------MQ 233 L H+ + + DRP G ++ LQ V LS Q Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGLQGAETVKVTGSLSTNHGEIARQ 231 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289 +C+ G G+ L + V+ + R+++ + P + ++ Y L ++ K++ F Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLIQ--VLPEYRQDADIWAVYTSPLMSSAKVRVTVEF 289 Query: 290 I 290 + Sbjct: 290 L 290 >gi|300703240|ref|YP_003744842.1| hth-type transcriptional activator aaer [Ralstonia solanacearum CFBP2957] gi|299070903|emb|CBJ42205.1| putative HTH-type transcriptional activator aaeR [Ralstonia solanacearum CFBP2957] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 31/306 (10%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ F V +GSFT AAE L + +S+ S +S LE +G++L R R L LTE Sbjct: 1 MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + ++ +L + +S SG LRIA ++G L + + L +P + Sbjct: 61 GSHFYDDIAPLFERLREVHADTTAASETVSGALRIAAPYEVGAQYLTEPVCQALARFPHL 120 Query: 123 QIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 QIQ+ + + D ++ Y + + + + SSL+ R++V I YAAP L R PL Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAPL 179 Query: 182 SI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---------NSYLSI 231 + +L ++ D D +W RP G P +V N+ + + Sbjct: 180 ATPADLSGWPCLSGPD-------DASW---GFRPAGAPAAEPFEVPIQPRLQTLNAEMRV 229 Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + V G G+A + + + LVR++ D VY AL KL + Sbjct: 230 -RAAVRGLGVARMARSVGDVEVETGRLVRVLSDYEPTPLRVY-----ALMPARKLVPRKV 283 Query: 289 FIFLKA 294 +FL A Sbjct: 284 RVFLDA 289 >gi|290509650|ref|ZP_06549021.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289779044|gb|EFD87041.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 295 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 119/244 (48%), Gaps = 5/244 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V GSF+ AE++ +S + + I LE +G++L R R +LT+ G ++ Sbjct: 1 MFVRVVDRGSFSAVAEEMRISGTMVGLHIKALEEHLGVRLLNRTTRRQSLTDFGQGYYQS 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +E ++ + KP GKLR+ + G + L +FL+ + D+ + L+L Sbjct: 61 CRRILADIEDSESQAFALHQKPRGKLRVGCPVSFGVHALSPVTAQFLIEWTDMAVDLVLS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 +K +D++ + D I++ + + ++L+ R + A+P Y+K EP++ +EL H Sbjct: 121 DKSMDMADEGLDVMIKIGELLHVNTLVARPIAPYRSVMCASPAYIKRAGEPITPEELCHH 180 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + F I W L +P+ P + N+ ++ + + G GI + P+ + Sbjct: 181 RCLGFAHPIAAN----EWTLQREGKPVRAPVNITMTCNNGEALRRAALNGLGIIMQPEIL 236 Query: 249 VKDN 252 + ++ Sbjct: 237 LAED 240 >gi|237811197|ref|YP_002895648.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|237505379|gb|ACQ97697.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] Length = 349 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ + LET +G++L R R L LT +G+ Sbjct: 36 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 95 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E + P G++RI + + G++ L L EF YPDI + Sbjct: 96 AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 154 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D + +D AIR + S L+ RKL M AP YL+ P + Sbjct: 155 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 213 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +LD+HN I P E+ L P L + SI + V G G+ Sbjct: 214 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 265 Query: 242 ALLPDYIVK---DNPNLVRIME 260 A L + V D LV ++E Sbjct: 266 ARLARFHVDADLDAGRLVPVLE 287 >gi|194365374|ref|YP_002027984.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348178|gb|ACF51301.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 13/250 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V +G F+ AA L ++ S++S+ ++ LE +G +L R R L LT +G Sbjct: 11 ELEVFVRVIETGGFSAAARTLDMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V LE + + +P G+LR+ + + GQ+ L L FL P + + L Sbjct: 71 YERGLRVLADLEEAE-RCASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLERNPQVGVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L+++ ID+ D A+R P++SSSL+ R+L M AAP Y + P + +EL Sbjct: 130 TLNDEVIDLLEQRTDVAVRA-GPLKSSSLVARRLGATRMMIVAAPAYAQRHGLPRTPEEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIA 242 HN + G + M+ + L G R+ N+ S + Q + G G+A Sbjct: 189 QSHNRLDIGH--ARAMQGWPLLQD-----GRERMLLPSGNARASNGNALRQLVLGGLGLA 241 Query: 243 LLPDYIVKDN 252 L Y V+++ Sbjct: 242 RLATYQVQED 251 >gi|222086880|ref|YP_002545414.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724328|gb|ACM27484.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 303 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 135/292 (46%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AA L + +++++ I LE + KL R R + +T G+ + Sbjct: 7 MRAFARVVETGNFTRAAATLSMPKATVTTLIQSLEAHLHAKLLNRTTRRVMVTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +++ + S PSG+LR+ + ++ L +F YPDI I L Sbjct: 67 ERAIQILSEIDELDGSISNSQSLPSGRLRVEMAGAFAEKIIMPALCDFYQRYPDIHIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R P SLI R++ I + AAP Y++ P EL+ Sbjct: 127 VGDRLVDYLAENVDCALRAGMP-SDQSLIARRVGEISLITCAAPLYIEKFGLPERPDELE 185 Query: 188 K-HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H +++ G +IP + N ++ PR L VN S + + G GI Sbjct: 186 STHYAVSYFRAQTGRVIPFEFQRGNESLEIN-----PRY-ILSVNDSRSYVNAAMAGLGI 239 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A P ++++D +L+ ++ ++ YP + K++ F +++ Sbjct: 240 AQAPAFMIRDELARGDLIPVLPGWTRSPIPLHIVYPPNRHLSNKVRVFVDWL 291 >gi|254247303|ref|ZP_04940624.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124872079|gb|EAY63795.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 295 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 138/274 (50%), Gaps = 14/274 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SF AA +L++S SS +R + +E +G +L R R L+LT+ G H Sbjct: 7 MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAG---H 63 Query: 68 RVTSEVYHKL-ETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +++ H + E ++E +S+ +P G L+IA + G ++L + F + +P I Sbjct: 64 LYLAQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVP 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + D + L + I +++L++R L + AAP Y++ P Q Sbjct: 124 EVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYVERHGTPAHPQ 183 Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + F D + + + F+ T R P S N L I + + G GIA+ Sbjct: 184 DLASHACLAFHADFMGEYLS-FDHDQT--RITVRPNKSASSNNVGL-IRNWALSGMGIAV 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 LPD++VK D+ L+ ++ + + YP Sbjct: 240 LPDFLVKSDLDDGRLLALLPGYRLEALEMNVAYP 273 >gi|170733060|ref|YP_001765007.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169816302|gb|ACA90885.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 297 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 127/286 (44%), Gaps = 8/286 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F VA SFT AA +L SQS++S + LET +G++L R R + LT G Sbjct: 5 DLIDLNAFVAVAEERSFTRAAARLLTSQSALSHTLRRLETRLGVRLLTRTTRSVALTPAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + ++ T + P G LRI T ++L L+EF+ YPDI Sbjct: 65 ETFLQGLKPAFEAIDLTLGTVGSLRESPRGTLRITTPRHAAVSVLWPVLQEFVRDYPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D D++ D D IRL + + + + + + + A P Y+ P Sbjct: 125 VEVNIDAAFRDLADDRFDAGIRLGELVAPNMVAVKIGPALRLAIVATPGYVARRGIPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L +H I F +P + W R + R+ L + I+ V G G+A Sbjct: 185 HQLAQHACINF--RLPGSGALYAWQFKKGRQEMKVRVEGPLTFDDPDMILAAAVDGQGVA 242 Query: 243 -LLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 L+ D+ +++D LVR +ED +P + YP N+ + Sbjct: 243 CLVEDHAAPMIRDG-RLVRFLEDWCSPFSGYHLYYPTRKNNSAAFR 287 >gi|116695918|ref|YP_841494.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113530417|emb|CAJ96764.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 339 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 9/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VA GSF+ A E+L + +S++SR + LET++ +LF R R LT +G + Sbjct: 30 AFMAVATEGSFSKAGERLGIGRSAVSRNVLKLETQLSTRLFLRTTRTTQLTREGERFFEN 89 Query: 70 TSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + V H +E L+ PSG LRI+ T G+ ++ L +F YPDI + L+L Sbjct: 90 CHQGVAHIVEAMNDMLELRLGPPSGLLRISATAGFGRKVVAPLLSKFSAAYPDISLDLVL 149 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 D++ D + D A R + I+ SS++ ++L+ + M A+P Y P +++++ + Sbjct: 150 DDRPTDFAAGNIDVAFRNGR-IEDSSIVAKQLIPMQMAVCASPAYAARHGLPSTLEDIAR 208 Query: 189 HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I + +E +F V + + R L N ++ + G GIA + Y Sbjct: 209 HECINTRIAGARILEWEFKVEGHVRKVVPAAR---LTFNDPELVLAAVLDGLGIAQMAGY 265 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D LV M Y CY +++ F +F+ Sbjct: 266 QACDRIARGELVIAMGRYAPDDRGHYICYLSRQHLPSRIRVFVDFM 311 >gi|16263755|ref|NP_436547.1| putative gstR-like transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|15139879|emb|CAC48407.1| putative gstR-like transcriptional regulator protein [Sinorhizobium meliloti 1021] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +R+F V SG F AA+ LH+S S++R ++ LE +G +L R R L LT G Sbjct: 4 WQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTAAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + S P+G L + G+ + + +FL YP +Q+ Sbjct: 64 GYVADCRRILGEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDHYPAMQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + I ++ ++ + D AIR+ + +S L+ R++ ++ +P Y +P S Q Sbjct: 124 KTIFVDRVTNLVDEGLDVAIRI-ASLPASGLVARRIGSVRQVLCGSPDYFARFGDPGSPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL +H +I L F + PI PR+ C N+ +++ V G G++ Sbjct: 183 ELARHRIIGREGLFGHSEWLFGRDNNIRVPI-SPRLIC---NTNDAVLAAAVAGWGLSRF 238 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y V + + R ++ D ++ + E + +++AF +F Sbjct: 239 QSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRIVSARVRAFVDF 286 >gi|297537389|ref|YP_003673158.1| LysR family transcriptional regulator [Methylotenera sp. 301] gi|297256736|gb|ADI28581.1| transcriptional regulator, LysR family [Methylotenera sp. 301] Length = 310 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 26/298 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F + GS A ++ ++ S+ I LE +G +L R R L +TE G + Sbjct: 10 FVKAVQGGSIAAGARLQGITPAAASQNIQRLEKSLGTRLLIRTTRQLAMTESGELYYAEV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + L Q + E +P G+++I ++ G+++L + F L YP+I +++IL + Sbjct: 70 RNIIEGLAKAQYAITEFQGQPQGRIKIGCSVAFGRHVLMPLIPAFTLKYPNISVEVILTD 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + D + D +IR ++ ++ LI RK+ T+ + A+P YL P EL +H+ Sbjct: 130 GNADHISEDIDVSIRFKQQLE-PGLIARKIATVPVLFCASPSYLARKGFPKEPAELLEHD 188 Query: 191 LITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + F +P +W D P +P I C ++S S+ + G+GIA L Sbjct: 189 CLVF--RMPVDGRILSWGFLRDGLRYEPEIKPTIICNDIDSLGSL---AIAGAGIARLAA 243 Query: 247 YIVKD-------------NP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I + NP N I D + F Y C+ + T K++AF +++ Sbjct: 244 FIANEEIKKGRLVALFQANPHNPESIQSDSVPLEF--YACFQDKHAITKKVRAFVDYL 299 >gi|205356892|ref|ZP_02342928.2| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325836|gb|EDZ13675.1| LysR substrate binding domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 300 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 122/279 (43%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AE + L + S+SRQI LE ++GI+L +R R + LT+ G + Sbjct: 8 MKLFVRVAERESFSRVAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + Q SGK+R+ L +L+ L FL YP I ++L Sbjct: 68 ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R +P+ + ++ R L + A+P YL P ++ +L Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186 Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H ++ + L P + W+ T L VNS + C+ G Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI P V++ L+ I+ V YP Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275 >gi|71908405|ref|YP_285992.1| regulatory protein, LysR:LysR, substrate-binding [Dechloromonas aromatica RCB] gi|71848026|gb|AAZ47522.1| transcriptional regulator, LysR family [Dechloromonas aromatica RCB] Length = 295 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 19/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F VA GSF+ A+Q +++S ++RQI+ LE +G+KL R R LTLT G+ Sbjct: 5 DAMHLFVRVAELGSFSAVAQQQGVARSVVTRQIAALEAHLGVKLMARSTRRLTLTSGGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +E + + E + P G +RI+ + G L L +F YP++ + Sbjct: 65 YLEKCRVILNLVEAAETGVAEERLTPRGNIRISLPLSYGLKKLAPVLLDFSQRYPEVVLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +++ + D +IR+ + ++S + RK+ + M AAP YL PL E Sbjct: 125 MDYSDRRVNLIEEGIDLSIRITRRLESGD-VARKIGSGRMLVVAAPDYLARHGRPLHPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L H + G + + ++ E ++ V S L+ + + G Sbjct: 184 LVHH--VCLGYTYAGSSQVWQFMV-------EGQLESFHVRSRLNANNGDVLTEAAAQGL 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI PD+IV + I+ D P +Y P Sbjct: 235 GITCQPDFIVDTFLAAGRVEEILADFPIPELGIYAMLP 272 >gi|330821997|ref|YP_004350859.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373992|gb|AEA65347.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 314 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 10/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + + VF V GSFT A L + +ISR +S LE + +L +R R LT+T+ G Sbjct: 4 FHNMSVFAKVVEMGSFTAVANHLDTTVGNISRAVSTLEEALNTRLLHRSTRRLTITDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + LE + E +++ ++P G LR+ LG++L+ + + +P + + Sbjct: 64 RFYERSAAILADLEHAEAEARDALLEPRGLLRVHCVPGLGRDLVTRAVLAYREAFPQVTV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + ++ D D +I + + + S+ + +++ T H A+P YL P + Sbjct: 124 DLRLSQRMPNLLEDQLDISIVIARALPDSAYVSQQIGTSHCVLAASPAYLAAHPAPERPE 183 Query: 185 ELDKHNLITFG--DLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H + G D P + + TV RP G P S VN ++ G+GI Sbjct: 184 DLVDHRCVLLGTVDYAPDVWQLEGAGGETVFRPTG-PHFS---VNDMEAMGTALEAGAGI 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LL Y D L R++ T V+ Y ++K F F+ Sbjct: 240 GLLAGYAALDALRAGRLQRVLPGYHTWRRKVFVMYSSRQFVDARIKRFVEFV 291 >gi|157371299|ref|YP_001479288.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323063|gb|ABV42160.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 310 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++ F VA GS + AA L L+Q ++S+QI+ LE ++ +L +R R +TLT+ G+ Sbjct: 5 NAMQTFVRVAELGSLSAAARDLGLTQPAVSQQIASLEQQLRAQLLFRSTRAVTLTDAGAG 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + + + L +++ G LRI GQ L F +P + I+ Sbjct: 65 YYRQIKPILAAVGEAEEVLHGQNLRLQGSLRIHAPTGFGQQHLTPLAIAFQQQHPQLNIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD++ D+ + D AIR + + S + R+L + A+P YL EP ++ E Sbjct: 125 LLLDDRRADVIGEGIDVAIRFGE-LSSPGTVARRLGELQRILVASPAYLAAQGEPQTLAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIA 242 L H I + L D + L T+ P G + + N+ S++ G GI Sbjct: 184 LATHPHIRYSGL-----SDADTL-TLIGPHGPEMVELRPVFRANNTFSLLAAIESGLGIG 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++ + LV I+ P ++ YP A GK++A+ ++ Sbjct: 238 GAQRPLIGRQLASGALVPILPAWRYPPMALHAVYPAARFIPGKVRAWVEYLL 289 >gi|186476703|ref|YP_001858173.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184193162|gb|ACC71127.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 325 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q ++ L EF+ YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAVNVVQQLRASPRGTVRVSVPVTISQTIMSQILPEFMHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ +D+ D D A+R+R +P ++++++ R L AP L P Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSEPPENANIVVRPLWRTQQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + T +N +A P G EPR L + + + Sbjct: 185 LEPADLKRFE--TLDTPTGDGRHVYNLIA----PDGTRHAHEHEPR---LVTADLMMVTE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M PS +Y + L G + A R F+ Sbjct: 236 AALAGVGIAALPEMMYGAALRSGRLSPVMPGWTLPSPQLYAVF---LSRQGMVPAVRTFV 292 >gi|27375232|ref|NP_766761.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27348368|dbj|BAC45386.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 294 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF +VA SF AA++L +S + S+ + LE +G +L R +R ++L+E G+ Sbjct: 7 MRVFCLVAELKSFATAAQRLRISPAMASKHVMQLEKRLGTRLLNRTSRRVSLSESGALYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + + +++V P G LR+ + + + G L ++ YP++ + + Sbjct: 67 EQARQMLDSLDEVEAAVSKATVVPRGTLRLTAPVWMANAIFAGVLADYQARYPEVCLDVD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ + D A+R +LI R + + AAP +LK P +L Sbjct: 127 LSGRLVNLVEEGFDLALRATG-TPDEALIARPITKVPFLLVAAPAFLKRAGRPTKFADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 L+ + L P N TV+ P L+ + + + G G A LP + Sbjct: 186 GQALLHYA-LYPGESFSLNRNGTVETIKLNP---VLRSGNETLLHMAALEGMGFAFLPKW 241 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V D+ LV ++ D I ++ YP + K++ F +FI Sbjct: 242 LVADDIAAGRLVHMLPDDIIFEGRLFAVYPSRKYLSAKVRTFIDFI 287 >gi|148254263|ref|YP_001238848.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406436|gb|ABQ34942.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 209 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 15/184 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD R+F V R+GSF AAE+L LS +++ R+I E ++G LF R G LT++G Sbjct: 29 DWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFERQIGATLFTRDVHGARLTDEG 88 Query: 64 SKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + + ++ET EL + + SG++R+A T LG L L EF + Sbjct: 89 A----LVVSAVERMETAAFELLRAGDGLAGAASGEVRVAVTEGLGTFWLAPRLVEFQQSF 144 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI---HMHAYAAPHYLKN 176 P++ + L + D+S AD AI L +P S + KLV + H+ +A+ YL Sbjct: 145 PNVLVDLYCAMRSADVSRHEADVAIHLSRP----SALDVKLVRLGRMHLMCFASEKYLGR 200 Query: 177 CREP 180 +P Sbjct: 201 GLKP 204 >gi|49085150|gb|AAT51256.1| PA1961 [synthetic construct] Length = 312 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 142/301 (47%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L F V G F A + + +S +SR+I+ LE + ++L +R R L LT Sbjct: 1 MPPDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + E + E SV+P G+LR++ + + + L L FL +P Sbjct: 61 EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +Q++++L N+ +D+ + D A+R+R+ + +L+ R+L AAP + R Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRR- 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232 L E D +L G + D AT+ P G EPR L V+ ++ Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230 Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V G G+ LLP+ Y ++ + +LVRI+ P T+ Y L + ++ A R Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287 Query: 290 I 290 I Sbjct: 288 I 288 >gi|152986667|ref|YP_001348428.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961825|gb|ABR83850.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 124/272 (45%), Gaps = 17/272 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR G+FT AA QL ++QS++S+ ISGLE + I+L R R ++ T G +L Sbjct: 12 FVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAI 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E EL KPSG +RI + + LL L LL YPDI+++ ++ Sbjct: 72 GNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDINY 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI D D +RL I + + M AAP Y +P + ++L HN Sbjct: 132 AFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRNPRDLVDHN 191 Query: 191 LITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 I G L + W DR + L N+ +I+ + G GIA L Sbjct: 192 CINMRMQSGGGL-------YAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAWL 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 P+ + L+R++E+ P F Y+ Y Sbjct: 245 PEEEFAPHIEEGRLLRVLEN-WCPLFPGYYLY 275 >gi|226944717|ref|YP_002799790.1| LysR family transcriptional regulator protein [Azotobacter vinelandii DJ] gi|226719644|gb|ACO78815.1| LysR family transcriptional regulator protein [Azotobacter vinelandii DJ] Length = 311 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 135/284 (47%), Gaps = 15/284 (5%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 +A +G+F AA QL +++S IS +I LE + LF+R +R + L+E G ++ E+ Sbjct: 1 MAETGNFAKAARQLGVTRSVISHRIQQLEQFIQAPLFHRSSRHVRLSEVGETYYQDCVEM 60 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 E ++ KP G+LRI T + L L EF+ LYP I++++++ ++ + Sbjct: 61 LAGFERLTENMRNLRAKPQGRLRIQVTSAFAIDYLGYLLAEFMQLYPGIELEVVVQDRIV 120 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ + D A++ P +L++R+L + A+P YL+N P +L +H + Sbjct: 121 DLIQEGFDVALQF-FPALVDTLVERQLFRVRRIFCASPGYLRNHAAPCHPGDLLRHTIGL 179 Query: 194 FGDLIPK----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + D P + ++ P G+ R S + + + + + G+GI LP + Sbjct: 180 Y-DGYPSRYQFVFRRGDERLEINLP-GQVRSSSVHL-----LRDFALGGAGIVCLPSLVA 232 Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV ++ D + +F YP + + K++ F+ Sbjct: 233 GKELLAGRLVPVLGDYVVGTFAFRAVYPTTQRGSLKVRKLIEFL 276 >gi|325919477|ref|ZP_08181498.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325550022|gb|EGD20855.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 291 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 12/246 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L F +VA + A+ S++++SR+I+ LE ++G++L R ARGL LTE Sbjct: 1 MDLNALIDFALVAANQGLGKASRASGRSKATLSRRIADLEEQLGVRLVERSARGLRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L T ++ +E P G+LR+A+ + Q + EF YP+I Sbjct: 61 GQLLMDRTEVPLSEVAEAMAAAREGLSTPRGRLRVASPVLFSQLAMGRIGAEFCAAYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++I +++ +D+ + D AIR+ P SSL+ R + AAP + P+S Sbjct: 121 MLEVIAEDRTVDLVEEQFDVAIRI-NPSPDSSLVGRCFAKDRLVVVAAPGFAM----PIS 175 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L + ++ + W+ R + EP I L+ +S+L + + G +A Sbjct: 176 ------GALTSVPAVVMSSFQPTTWVLDDGRLVLEP-IPRLRFSSFLMVRDAAIAGGSVA 228 Query: 243 LLPDYI 248 LLP I Sbjct: 229 LLPQSI 234 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] gi|133737918|emb|CAL60963.1| putative transcriptional regulator (LysR family) [Herminiimonas arsenicoxydans] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 6/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++ + GS AA++L ++ S+S++++G+E + ++L R R ++LT +G Sbjct: 7 LAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEIYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +LE + + +V G L+I+ T G+ + L F LYP++ +QL Sbjct: 67 ADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQLH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ D IR + + + L RK+ A+P YLKN PL+ ++L Sbjct: 127 LTDRPVNLVEQGFDADIRFGQ-LPDARLTARKIADNRRLVCASPAYLKNHGIPLTPRDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 KHN I + + +++ + + + R S L N + + G GI + ++ Sbjct: 186 KHNCILLRE-SDEIYGSWHFSSGTKQETVKVRGS-LSANDGECATAWALDGQGIVVRSEW 243 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 V + L ++ED P +Y +P + K +A +F+ Sbjct: 244 DVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFML 290 >gi|104780739|ref|YP_607237.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95109726|emb|CAK14427.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 318 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 10/251 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V +GSF+ AA + L+ S+++R+I LE+ VG +LF R + T G+ Sbjct: 8 EQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFSRSTHAVRATPAGNA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + E S P G +RI G+ L + +FL+ YP + +Q Sbjct: 68 FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127 Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L + +D+ + D +R P+ + L+ L + A A+P YL + P Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGVPAC 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240 EL +H+ + + L P F W +VD + P + N+ +++ + G G Sbjct: 187 PSELPEHDGLDWDGLAPP----FAWRFSVDGQVRLYRPARMRMAANNAETLLFGALAGLG 242 Query: 241 IALLPDYIVKD 251 IA LP +++ D Sbjct: 243 IAHLPTWLISD 253 >gi|328470331|gb|EGF41242.1| LysR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 295 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 15/279 (5%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S+IS++I LE ++G++L R R ++ TE Sbjct: 1 MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + + P+G L+I T+ +G L L +FL YPD Sbjct: 61 AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120 Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I +QL L + ++S+D R + + S S L YAAP YL+ Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYGT 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P +++EL KHN++ +G+ + ++ +R + ++ G Sbjct: 179 PQNVEELTKHNILIWGEKPAREIK-------TNRGKRVSLSGNFATTNPEALFHGAKRGM 231 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 GI + + ++KD+ LV I+ DV TVY YP+ Sbjct: 232 GILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPK 270 >gi|157145436|ref|YP_001452755.1| hypothetical protein CKO_01179 [Citrobacter koseri ATCC BAA-895] gi|157082641|gb|ABV12319.1| hypothetical protein CKO_01179 [Citrobacter koseri ATCC BAA-895] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF VAR F+ AE+L +S + IS++++ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMRVARRAGFSAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVDQMMDELSDVRQVPQGMLRIISSFGFGRRIVAPALSALAKQYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I +S+LI KL T + A+P +L+ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDEI-ASNLIAHKLGTNYRILCASPAFLEQHGTPKQLSD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L + +I + F W L T +R L N + Q+C+ G GIAL Sbjct: 187 LAAFPCL----VIKERDHPFGIWQLRTKEREYSIKVTGSLSSNHGEIVHQWCLDGQGIAL 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V DN +LV+++ + P+ ++ L ++ K++ F+ Sbjct: 243 RSWWDVCDNIASGHLVQVLPEYYQPA-NIWAVSASRLSSSAKIRITVEFL 291 >gi|170735037|ref|YP_001774151.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821075|gb|ACA95656.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 27/300 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F VA SFT AAE L + + +S + LE ++G+ L +R R + LTE G Sbjct: 5 DALLIFARVAEMASFTRAAESLGIQKGRVSTVVRTLERDMGVALLHRTTRRVQLTEDGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ +++ Q G+LR+ +L ++++ L + + +PD++++ Sbjct: 65 FYARATDLLAEVQELQSMFSGRGASLRGRLRVDMPTELARSVVVPALPQLMAAHPDLELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC IRL PI +LI R L + M A+P YL P ++ + Sbjct: 125 LSSTDRRVDLVREGFDCVIRL-GPIADETLIARPLGRLRMTNAASPDYLARHGVPHTLAD 183 Query: 186 LDK------HNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 L H +T G P + + WL P S +QVNS + Sbjct: 184 LHSQGHKMIHYTLTLGARHPGWEYPDGDGYAWL---------PLPSAMQVNSVQTYHAAG 234 Query: 236 VLG-----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G +G + L +I ++ LV ++ D+ + +++AF ++I Sbjct: 235 LAGIGLIQAGYSALAHHI--ESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292 >gi|84503058|ref|ZP_01001154.1| Transcriptional regulator, LysR family protein [Oceanicola batsensis HTCC2597] gi|84388602|gb|EAQ01474.1| Transcriptional regulator, LysR family protein [Oceanicola batsensis HTCC2597] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 125/268 (46%), Gaps = 15/268 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD LR+F VAR S + A +L + +++ R++ LE E G LF + +G LT+ G Sbjct: 3 WDDLRIFLAVARDESLSAAGRRLRIDPATVGRRVGRLEQETGAALFVKSPQGYALTDAGQ 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + + Q + + SG++RI + LL L P+++I Sbjct: 63 RLLDHAQQAEQAVLAAQEGIAGQAGGLSGQIRIGAPDGVANFLLPQVCARILDANPELEI 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q++ + ++S AD A+ + P L+Q K+ +H A+ Y+ +++ Sbjct: 123 QIVALPRLFNLSRREADMAVTVSAPTAGRLLVQ-KITDYRLHLAASHDYMARHDPIAALR 181 Query: 185 ELDKHNLITFGDLIPKCMED--FNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H ++ + IP + D ++L +D P+ L NS L + + G+G+ Sbjct: 182 DLKAHRMVGY---IPDMIFDRELDYLGELDAGPV------PLASNSVLVQLHWLRQGAGV 232 Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSF 267 ++ D+ + P L RI+ D +T SF Sbjct: 233 GIVHDFALPSAPELRRILTDQVALTRSF 260 >gi|331652378|ref|ZP_08353397.1| putative transcriptional regulator LYSR-type [Escherichia coli M718] gi|331050656|gb|EGI22714.1| putative transcriptional regulator LYSR-type [Escherichia coli M718] Length = 257 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 3/239 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQLI Sbjct: 69 SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245 >gi|307728674|ref|YP_003905898.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583209|gb|ADN56607.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 298 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 16/292 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ LR F VAR+GS + AA L + S++SR+IS LE + + LF R G +LT + Sbjct: 1 MDWNDLRYFLCVARTGSLSKAAGDLGVGVSTVSRRISELEASLRVTLFTRSPTGYSLTRE 60 Query: 63 GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G ++ V + V+ +E + L E +PSG +R+AT+ ++ +L+ L +F Sbjct: 61 GERVLEGAEMVEAGVF-AVERSAYGLAE---QPSGTVRLATSENIATDLVIPALPQFREQ 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP I+++++ ++ AD A+R+ +P +L R+L + Y YL+ Sbjct: 117 YPLIRLEIVTSTLTAELDTQEADIALRMVRP-NRGNLKVRRLGRMTYSVYGRRDYLQA-- 173 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + + K D + W A I + I L +S + + G Sbjct: 174 HPATDGDPLKGRSFIAWDGAHAHLPAAVWAA---ERIPDSDI-ALVTSSLPTQIAAVRAG 229 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A++PD++V N +LV+++ V S V+ + ++ ++KA +F+ Sbjct: 230 LGLAIIPDFLVA-NDDLVQVLPPVRVFSNHVWLVVHPDISSSARVKAVSDFL 280 >gi|262378573|ref|ZP_06071730.1| LysR family transcriptional regulator [Acinetobacter radioresistens SH164] gi|262299858|gb|EEY87770.1| LysR family transcriptional regulator [Acinetobacter radioresistens SH164] Length = 309 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 11/273 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V SF+ AA +L ++ S++S+QI LE E+ + L +R R L+LTE Sbjct: 3 DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMEVILLHRSTRKLSLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G E+ E ++ + E + G LRIATT ++G L L ++ + + Sbjct: 63 GQAFFHSCREMLAAAERGKVRINELRDELVGDLRIATTPEIGAMHLVPALSHWISAHRGL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + +NK ID+ D A+R+ I+ S+L L + A+P YL N P+S Sbjct: 123 SVHFEAENKYIDLIEGRIDIAVRMSSKIEDSNLTAVPLARVEQILVASPSYL-NQSAPIS 181 Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240 E L H+LI + + F++ V + + + S L N+ L C G G Sbjct: 182 RPEDLKNHDLIPIN--VMNNYQQFSFQHGVTSEVVDLEMRSRLYSNNVLVAKSLCQHGHG 239 Query: 241 IA-LLPDYIVKD--NPNLVRIMEDVITPSFTVY 270 +A +L + KD N +LV ++ + P+FT+Y Sbjct: 240 LARILYLDVQKDLINGSLVEVLPEWKLPAFTLY 272 >gi|254471805|ref|ZP_05085206.1| transcriptional regulator, putative [Pseudovibrio sp. JE062] gi|211959007|gb|EEA94206.1| transcriptional regulator, putative [Pseudovibrio sp. JE062] Length = 346 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 9/289 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DW+ + F VAR+GS AE LH + +++R I LE G+ LF R +G LTE Sbjct: 49 SSDWELMPAFLAVARAGSLRAGAELLHTNYGTVNRNIQALEASYGVALFVRSTKGFKLTE 108 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + + ++ +G LR + T +++ + F YPD Sbjct: 109 AGEAVLPFAEQAEQVIINARKRVEGLDKTEAGTLRFSVTPTFAYDVITPIISRFQEAYPD 168 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 IQ+ L L + +I+ D D ++R + S ++ RKL + M YA+ Y+ Sbjct: 169 IQVALRLTSAVENINKDETDVSLRAAYDV-SGDVVARKLYPMAMGIYASKAYIDTTFAKA 227 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q L G P+ NW++ P + R S + Y+ +Q G GI Sbjct: 228 GPQ---GAGLSWIG--WPENGPFSNWISQSAFPQADVRHSV--SDGYMR-LQMLREGCGI 279 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +P K P+L R+ + T++ L+ T +++ F +F+ Sbjct: 280 SPMPVVFEKYFPDLYRVPGTPLEFGQTLWIVLHADLRKTVRIRRFVDFL 328 >gi|297180159|gb|ADI16381.1| transcriptional regulator [uncultured bacterium HF130_12L15] Length = 292 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 1/192 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ L+ F VA +GS + AA ++ +SQ S+ R ++ LE ++GIKLF R G L+E Sbjct: 1 MDWNLLKSFVAVAETGSLSAAARKIEVSQPSVGRHVAELERQLGIKLFRRGRAGYELSED 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + E ++ +G +RIA + + +L F + P I Sbjct: 61 GIALLGRARAMREQAEAISRLALGATEAVAGTVRIAASEVVSAYVLPSMTAAFAKMEPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I+++ N+ ++ AD AIR+ +P Q L+ RK+ I + A AA YL P S Sbjct: 121 EIEIVASNQVENLLRRDADIAIRMVEPAQ-LDLVARKITDIPLAACAATSYLDRRGRPAS 179 Query: 183 IQELDKHNLITF 194 E+ H+L+ + Sbjct: 180 PAEIVGHDLVGY 191 >gi|289673880|ref|ZP_06494770.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae FF5] Length = 205 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 100/190 (52%), Gaps = 1/190 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + GSF AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGSFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL++Q Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPLNLQ 182 Query: 185 ELDKHNLITF 194 EL +H +I + Sbjct: 183 ELVQHQVIEY 192 >gi|206560654|ref|YP_002231419.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198036696|emb|CAR52595.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 324 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L+ +L + + + + FN +A P G +PR L ++I + Sbjct: 185 LAPDDLTGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|123442718|ref|YP_001006695.1| Lys family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089679|emb|CAL12531.1| putative Lys-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 310 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 14/298 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +GSF+ A QL +S S+ISR +S LE + +L R R L L+E G ++ Sbjct: 12 EMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEEV 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + + + S +P G +R++ +G+ ++ ++ EFL Y I +QL Sbjct: 72 FKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHMPEFLQRYSKIDVQL 131 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ILD++ +D + D IR+ +P ++ R+L+ I A P YL PL + Sbjct: 132 ILDDRYVDFIDENVDLVIRITDQP--PPGMVGRQLMNIEHLLCATPEYLAAQGTPLHPHD 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALL 244 L +H+ I G+ F V + R + L +++Q+ +GS L Sbjct: 190 LAQHSCIYLGETPGDARWKFRQGTKVITVAVKGRYAANHTGVRLDAVLQHIGIGS----L 245 Query: 245 PDYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 P + + LV+++ + + + S ++ YP KL+ F ++I + RD Sbjct: 246 PYFTARTTLQQGQLVQVLPEWRFISSYSGGLWLLYPPTRYLPAKLRVFIDYIVGRLRD 303 >gi|170733562|ref|YP_001765509.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169816804|gb|ACA91387.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 324 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L+ +L + + + + FN +A P G +PR L ++I + Sbjct: 185 LAPDDLTGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|21244433|ref|NP_644015.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21110097|gb|AAM38551.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 298 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 137/298 (45%), Gaps = 27/298 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AA+ L S +S++RQ++ LE +G +L R R ++LT GS Sbjct: 5 DAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + +++P+G LR+ + G L L F YP +++ Sbjct: 65 YYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P + LI R+L + + A A+P YL P Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRILACASPAYLARAGTPQHPS 182 Query: 185 ELDKHNLITF-----GDLI----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 +L H + + GD P+ D L+ N+ + Sbjct: 183 DLAGHECLLYHYSPNGDDARFQGPQSDIDVRLHGG------------LRANNGHVLNAAA 230 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI + PD++ + + LVRI+ + ++ Y K+++F +++ Sbjct: 231 LAGQGIVIQPDFLAEPHIAAGRLVRILPEYAMGEIGIFAVYTSRSHLAPKVRSFIDYL 288 >gi|107028619|ref|YP_625714.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690222|ref|YP_835845.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105897783|gb|ABF80741.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116648311|gb|ABK08952.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 324 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L+ +L + + + + FN +A P G +PR L ++I + Sbjct: 185 LAPDDLTGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|260463168|ref|ZP_05811370.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259031018|gb|EEW32292.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 3/187 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF V G+ + A + +S + S +I LE +G++LF R R L TE G+ Sbjct: 5 DNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V + + + S +P G +R+ + LG+ L+ + +F YPDI+++ Sbjct: 65 FYAGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + ++DI + D A RL I+ SSL R ++ AAP YL+ EP+ QE Sbjct: 125 LRLSDHNVDIMKEGIDVAFRL-GIIEDSSLRMRGIMECERVLVAAPKYLEARGEPVEPQE 183 Query: 186 L--DKHN 190 L KH+ Sbjct: 184 LIGKKHD 190 >gi|157369642|ref|YP_001477631.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157321406|gb|ABV40503.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 296 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 15/294 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V GSF AAE++ +S + + + I LE + L R R LTE G + Sbjct: 9 VFVRVVEKGSFVAAAEEMAISPTMVGKHIRYLEQRLNAPLLNRTTRRQGLTETGRVFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + + PSG LRI+ + G +L L EFL +P+++ +++L Sbjct: 69 CRRLLADADAAEASARALLSSPSGLLRISAPVTFGNRVLTPILTEFLQRHPEVEAEVVLS 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + + A R+ P+ L+ R L M A+P YL P ++L H Sbjct: 129 DRKVDLIEEGYEAAFRI-GPVADDGLVARALPDYRMTLAASPDYLAQQGVPTQPEQLSAH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + F D N + P GE P L+++S + + + G GIAL Sbjct: 188 SCFGFSQW------DGNHFWRLQGPTGEISVPVRPRLRMDSGEGVRRAALAGFGIALHAC 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 ++ ++ LVR++ D S ++ Y + + KL+AF AR W Sbjct: 242 MLLDEDIASGRLVRVLPDYSPLSRPMHLVYLPERRQSPKLEAF--IALTVARLW 293 >gi|150395293|ref|YP_001325760.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150026808|gb|ABR58925.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 302 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT A+ L++ +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRAFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ L + P G+LR+ T ++ L EF YPDIQI L Sbjct: 67 ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHNKYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID + DCAIR + SLI R++ + A A+ +L+ P +L+ Sbjct: 127 VSDRTIDYLAENVDCAIRAGT-LTDQSLIARRITEMQFVACASRDFLERHPVPQHPSDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 K N G +PK + + R E +S + N S + G G+ Sbjct: 186 K-NCYVVGYFLPKTGQQMPF--HFRRGNEEIEVSGRYTVAANESTSYIAAARAGLGVIQA 242 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V++ N ++ ++ D VY YP + +L+ F +++ Sbjct: 243 PLFMVREDLRNGTMLPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWV 291 >gi|91224530|ref|ZP_01259792.1| probable LysR-family transcriptional regulator [Vibrio alginolyticus 12G01] gi|269968258|ref|ZP_06182284.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91190872|gb|EAS77139.1| probable LysR-family transcriptional regulator [Vibrio alginolyticus 12G01] gi|269827115|gb|EEZ81423.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 144/301 (47%), Gaps = 19/301 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D++R F V +GS + AAE L ++ S++SR +S LE ++ L R R L +T Sbjct: 1 MKATLDEMRTFMAVVDTGSISSAAELLSMTVSAVSRSVSRLEAKLETTLLNRTTRKLDVT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G+ + +E + +L+ KPSG LRI ++L ++ ++ LYP Sbjct: 61 NEGTIYLDKVRHIVEAVENAEAQLKSQKYKPSGLLRINAATPFLLHVLTPHIAKYQSLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++I L + ++I + D A R+ + +Q+S++ L + A+P YL+ P Sbjct: 121 EVEIDLNSNEENISLLGTKTDIAFRIGE-LQNSTMRAIFLGKSRIRIVASPEYLRQHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 SI +L H L+ F P+ +++ W D+ +S L+ ++ ++ + G+G Sbjct: 180 TSIDQLLNHKLLGFNK--PEYLKE--WPIMDDKNKLLRIMSSLRSDNGETLRCLALHGAG 235 Query: 241 IALLPDYIVKDNPNLVRIM-------EDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FL 292 IA L D++ + R++ +V P VY+ KN + +FI F+ Sbjct: 236 IACLSDFMTYSDRQAGRLVGVLSEHTHNVEQPVHAVYY------KNASTSRRISSFIDFI 289 Query: 293 K 293 K Sbjct: 290 K 290 >gi|148253783|ref|YP_001238368.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405956|gb|ABQ34462.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 297 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 14/277 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F +AR SFT+AA +L +SQS++S I LE +G++L R R + T G + Sbjct: 7 DDLLAFVAIARERSFTNAAAKLGVSQSALSYTIRELEARLGVRLLTRTTRSVAPTAAGLR 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++E ++E KP+G +RI T + +L L + L YPDI+++ Sbjct: 67 LLTTAGPRLEEIEAELAAIRELRDKPAGTIRITATEYAAEAILLPKLAKLLPAYPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +++D DI D +R + ++ + R + + AP Y K P Q+ Sbjct: 127 IVVDYGLTDIVAKGFDAGVRSGEQVEKDMVAVRIAPDMRIAVVGAPSYFKTRPVPKKPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L HN +T +P W ++ + R+ L N+ IM+ + G G+A Sbjct: 187 LIGHNCLTL--RLPTHGGLHAW--EFEKGGRDLRVRVEGQLTYNATSQIMKAALAGLGLA 242 Query: 243 LLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYP 274 +P+ +I K L R++ED P + YP Sbjct: 243 YVPEGWAQPHIAKG--RLKRVLEDWCLPYSGYHLYYP 277 >gi|260550586|ref|ZP_05824795.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406297|gb|EEW99780.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 309 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR I+ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + L+ RKL+ I A P YL P + Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPHD 189 Query: 186 LDKHNLITFGD 196 L +H I G+ Sbjct: 190 LKQHECIYLGE 200 >gi|227822930|ref|YP_002826902.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] gi|227341931|gb|ACP26149.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 307 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 129/294 (43%), Gaps = 15/294 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A E+L ++Q+++S QI +E VG LF R R +TLTE Sbjct: 14 FPLNALRVFEAAARLGSFTRAGEELGMTQTAVSYQIKLIEESVGEPLFLRRPRQVTLTEV 73 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L + + L I +T L N+ F + +P I Sbjct: 74 GQRLAPKVTEAFELLLEA---VTSARTDADTALFIHSTPTFASQWLARNIGTFQIAHPHI 130 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L +K ID + AD AIR L L+ + +P + Sbjct: 131 SVRLATADKVIDFGKEAADIAIRYGDG-NWPGLTCHPLMRVEFTPMLSPALAETIGGVHE 189 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240 ++L K +I D E + A V+ P G P S L ++ + + V G G Sbjct: 190 PRDLLKLRIIDPND---PWWEQWFRAAGVENPELAGRP-ASRLGAQAFEA--RAAVAGQG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +A+L D+ L R+ + S + YP A +N K++AFR++I Sbjct: 244 VAILTPDFYSDDVALGRLYQPFDLRCNDSHDYWLVYPHARRNAPKIRAFRDWIL 297 >gi|150376269|ref|YP_001312865.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030816|gb|ABR62932.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +R+F V SG F AA+ LH+S S++R ++ LE +G +L R R L +T G Sbjct: 4 WQAMRIFVQVVESGGFAPAAKALHMSPPSVTRAVAQLEGLIGTRLLIRTTRSLKMTAAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + S P+G L + G+ + + +FL YP +Q+ Sbjct: 64 GYLADCRRILAEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDAYPAMQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ ++ + D AIR+ + +S LI R++ ++ +P Y EP S Sbjct: 124 KTVFVDRVTNLVDEGLDVAIRI-ASLPASGLIARRIGSVRQVLCGSPDYFARFGEPGSPH 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL H +I L F +++ PI PR+ C N+ +++ V G G++ Sbjct: 183 ELAGHRIIGREGLFGHSEWLFGRDSSIRIPI-SPRLIC---NTNDAVLSAAVAGWGLSRF 238 Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y V+ + R+ + D ++ + E + +++AF +F Sbjct: 239 QSYQVEADIRAGRLKVALADYEREPVPIHIVHAEGRMVSARVRAFVDF 286 >gi|111021521|ref|YP_704493.1| LysR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110821051|gb|ABG96335.1| transcriptional regulator, LysR family protein [Rhodococcus jostii RHA1] Length = 297 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 19/295 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F D +R ++R+G AA++L + +++SR+I+ LE + G +LF R G LTE Sbjct: 2 FTADNMRYLLELSRTGRLADAAKRLGVDHTTVSRRITRLEKDTGTRLFDRGVSGWQLTEA 61 Query: 63 GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G +L V S V L+ T S +G +RI T G +L L + Sbjct: 62 GRRLVPHAEAVESAVLAALDETS-----SLGGLTGTVRIITPDGFGSFVLVPGLAALRSV 116 Query: 119 YPDIQIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +L+ D+ D+ D A+ L +P S++ RKL + YA+ YL + Sbjct: 117 HPDLFTELVTSTTHDLLTGRDF-DIAVTLERP-SPRSVVVRKLADYDLRLYASRRYL-DA 173 Query: 178 REPL-SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +P+ S+++L H LI + D D L +D I + + + +Q N+ Q Sbjct: 174 HDPITSLEDLRHHTLIWYVD----AFLDVEPLRILDALIPDFQ-AQIQTNNIAGHYQAVK 228 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GIA LP YI + +LV ++ D T + P L ++KA ++ Sbjct: 229 HGVGIAPLPSYIGALDEDLVPVLRDDFIAHRTYWLVVPRELTRLARVKAITEALY 283 >gi|24114360|ref|NP_708870.1| transcriptional activator TtdR [Shigella flexneri 2a str. 301] gi|30064408|ref|NP_838579.1| transcriptional activator TtdR [Shigella flexneri 2a str. 2457T] gi|110806947|ref|YP_690467.1| transcriptional activator TtdR [Shigella flexneri 5 str. 8401] gi|24053524|gb|AAN44577.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a str. 301] gi|30042665|gb|AAP18389.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|110616495|gb|ABF05162.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5 str. 8401] gi|281602448|gb|ADA75432.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2002017] gi|313648175|gb|EFS12621.1| HTH-type transcriptional activator ttdR [Shigella flexneri 2a str. 2457T] gi|332752732|gb|EGJ83117.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-671] gi|332753115|gb|EGJ83499.1| HTH-type transcriptional activator ttdR [Shigella flexneri 4343-70] gi|332754693|gb|EGJ85059.1| HTH-type transcriptional activator ttdR [Shigella flexneri 2747-71] gi|332765308|gb|EGJ95532.1| DNA-binding transcriptional regulator LYSR-type [Shigella flexneri 2930-71] gi|333000133|gb|EGK19716.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-218] gi|333014796|gb|EGK34141.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-304] Length = 333 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 9/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V ++ LV+++ + S ++ Y E L + K + RNF Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYRELLYRSMKFVSARNF 291 >gi|87119883|ref|ZP_01075779.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86164585|gb|EAQ65854.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 297 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 17/291 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VA + + + A +L LS S I+ LE +G+KL +R R ++LTE+G + Sbjct: 4 EHLKLFIRVAATNNISLAGSELGLSPPVASMHINKLEESLGVKLIHRTTRKVSLTEEGRE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V + + + + + S P G +R+ G+ + LK FL L P +++ Sbjct: 64 FLPHAEDVINAVNSAKASVGAGSFTPQGTIRVTVASSFGRMHVVPALKAFLALNPQLKVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR + SSL+ RKL A+P Y+ EP + + Sbjct: 124 LRQSDSIVDMVEGGFDVAIR-NASLNDSSLVARKLAADRRIICASPEYIHEYGEPKTPEA 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L HN I +LI DF P G RI ++ ++ S C+ G GI Sbjct: 183 LLAHNCI---NLIGIDYWDFK------TPQGNVRIKPKGSMRSDNGESTRDTCIDGMGIT 233 Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289 + Y + LV++++D S T ++ YP + K++AF +F Sbjct: 234 ISSVWCAYQALEEGKLVQVLKDYPLASDTAIWAVYPSSRLLAPKVRAFIDF 284 >gi|327193182|gb|EGE60090.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 14/250 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GSF + + LS+S+ + + LE +G +L R R L+LT++G + Sbjct: 11 IFMAVVDAGSFVAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEGRLFYEH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++ + + S P G LR+ G+ ++ ++++LL +PDIQ+++ Sbjct: 71 GLGVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQVEVNFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ DI + D AIR+ +S L+ R + A+P YL + EP I +L Sbjct: 131 DRKADIVEEGFDLAIRIGAMPSASENRLVSRVIAADRARLCASPSYLADRGEPCHIDDLA 190 Query: 188 KHNLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F + +D W+ R S L+++S +I V G GIA Sbjct: 191 AHDCLVFSSRDQRQGWRFRGDDGAWVKAQGR-------SRLRLDSNEAIRDAAVAGLGIA 243 Query: 243 LLPDYIVKDN 252 LLP ++ + Sbjct: 244 LLPGFLAAGD 253 >gi|312173602|emb|CBX81856.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia amylovora ATCC BAA-2158] Length = 293 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 129/285 (45%), Gaps = 19/285 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +VA GSFT AA + L +SS+S++I+ LE +G++L R R L LT G + Sbjct: 11 LFALVAGCGSFTAAATRAGLPKSSVSQRINQLEQTLGLRLINRTTRQLNLTFAGERYLVH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 E+ E + ++ PSG+LRI + + LL F YPD+ +++ + Sbjct: 71 CQEMVQASERAGLAIERLRDNPSGRLRITSPAGIAATLLARVNTAFQQKYPDVTLEVSVS 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ D A+R KP Q SSLI R++ A+P YL + ++L +H Sbjct: 131 DEMCDLVQSRFDVALRTGKP-QDSSLIGRRIGDGQRRLVASPGYLADYPPLAHPRQLSEH 189 Query: 190 NLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244 I L+ + E + WL + + L + C L S GI LL Sbjct: 190 RCIAHRAWNEWLLQRNDEYYRWL-----------LPPTHMTDNLLYARECALSSGGITLL 238 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P ++ + LV+++ ++ YP N+ L F +F Sbjct: 239 PRFLCCE--KLVQVLPAWEVEGNELWLVYPSRKLNSPALSRFVDF 281 >gi|239820772|ref|YP_002947957.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] gi|239805625|gb|ACS22691.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 316 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 21/291 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + F VA++ SF AA QL +S+S ++ ++ LE VG LF+R R + L++ G Sbjct: 5 ENIETFVRVAQTQSFAEAARQLRVSKSVVTSRVKQLEDHVGAPLFHRSTRVVRLSDVGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R E+ + +++++ P+G LR+ L+ F +PDI ++ Sbjct: 65 FLRDCVELVGRANDIMDQMRDAKDGPTGTLRVHALTGFVLGHFATLLRAFQSSFPDIHLE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI+ + +D DCA+++ P S+ L+ R L + A P YL+ P S +E Sbjct: 125 LIVSDAVVDPVKAGVDCALQI-FPAASTELVSRSLFPVRRVFCATPEYLRAHGRPASPRE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240 L KH L + + F+ G ++ + L NS + +Y + +G Sbjct: 184 LHKHTLGLYSGYPTRDRWTFHH--------GGEQVTMYMSAALLTNSVHLLREYAMEHAG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAF 286 I LP + + ++R +V+ P SF++ Y +N KL+ F Sbjct: 236 IVCLPTLVAGE--AILRGELEVVLPAHQLSSFSLSAVYAGTSRNAFKLRLF 284 >gi|170739803|ref|YP_001768458.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194077|gb|ACA16024.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 299 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 9/295 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + V V GS + A +L L +++SR++S LE + +L R +R + LTE G Sbjct: 4 FDAMAVLLAVVEEGSLSAGARRLRLPLTTVSRKVSDLERHLRARLLTRTSRRVDLTEAGH 63 Query: 65 KLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ E + E SV P G L + G+ L + +FL+ YP+I Sbjct: 64 AYVAAARRILEQVREAERAATGEYSV-PRGDLSATAPVVFGRRHLVPIVTDFLVAYPEIA 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L+L ++ +++ D+ D A+R+ P+ S+L+ ++ + A+P YL P + Sbjct: 123 VRLLLIDRSVNLVEDHIDVALRI-GPLADSALVATRVGLVRRVVCASPEYLARRGTPAAP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L H+L+TF F AT P+ P L VN+ + + G G+ Sbjct: 182 EDLAAHDLVTFEGFPATTDWRFRRGAT---PLSIPIRPRLAVNAAEAAVDAARAGLGVTR 238 Query: 244 LPDYIVKD--NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + Y D +R++ + P+ V F +PE + K++AF ++ + R Sbjct: 239 VLSYQAADEIRSGALRVLLEAYEPAPLPVSFVHPERGQLPLKVRAFLDWAIPRMR 293 >gi|83718422|ref|YP_442910.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|167581852|ref|ZP_02374726.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] gi|257139126|ref|ZP_05587388.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83652247|gb|ABC36310.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + + Sbjct: 11 LHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +Q + + + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGTPAKVADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|254247704|ref|ZP_04941025.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124872480|gb|EAY64196.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 324 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L+ +L + + + + FN +A P G +PR L ++I + Sbjct: 185 LAPDDLTGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|322834757|ref|YP_004214784.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321169958|gb|ADW75657.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 129/261 (49%), Gaps = 13/261 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++ +F V + GS AA +LH S +I+R I+ LE G +L R R L TE G++ Sbjct: 5 DEMAIFVAVLQYGSLAEAARKLHRSPPAITRAIASLEHRFGARLVERTTRSLAPTEAGAR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + E+ + SG LRI + G+ + + EFL +PD+QI+ Sbjct: 65 LAEKARLLLSQYQNAVEDTAETQL--SGLLRITAPVQFGRKHVAPLVMEFLAQHPDMQIE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++++D+ + D A+R+ + S + RK+ + A+P YL EP E Sbjct: 123 MMLNDRNLDLIDEGLDLAVRIGHQ-EDSGKVARKVAQVTRVLVASPAYLAQHGEPQHPSE 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H + G L + E + + D R PR+ V S L ++ G GIA Sbjct: 182 LASHQTV-MGTLRTQIRE-WRFGPNEDDLRVRLSPRLLSNDVESQLLAVRS---GQGIAR 236 Query: 244 LPDYIVKDN---PNLVRIMED 261 L Y V+D+ +VR+++D Sbjct: 237 LLSYQVRDDVQAGRMVRLLKD 257 >gi|304396976|ref|ZP_07378856.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304355772|gb|EFM20139.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 127/286 (44%), Gaps = 37/286 (12%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QLHLS SSIS+ ++ LE + +KL R R + LTE G + Sbjct: 7 MSVFARVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGKIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + +L + P G+LRI ++ + QN+L G + L YP + + L+ Sbjct: 67 QGCRRMLAEATQVHEQLYAFNNTPIGELRIGSSSTMAQNVLAGMTSDMLREYPGLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ ++ SSL R+L + M AA YL P Sbjct: 127 TGVPAPDLIADGLDLVIRV-GALKDSSLFSRRLGAMPMVVCAAKSYLTQHGTPEK----- 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-------IGEPRISCLQ------VNSYLSIMQY 234 P +++F+WL RP E ++ L N L+++++ Sbjct: 181 -----------PADIDNFSWLEYSVRPDNNFELIAPEGLVTRLSPQGRFVTNDSLTLIRW 229 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPE 275 G+GIA +P V + N I D++ P + VY Y E Sbjct: 230 LKSGNGIAYVPMMWVINEINAGEI--DILFPQYQSDPRPVYALYTE 273 >gi|319764837|ref|YP_004128774.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|330827042|ref|YP_004390345.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317119398|gb|ADV01887.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] gi|329312414|gb|AEB86829.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 296 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +L+VF V GSF+ A +LHLS S+IS+ I+ +E +G++LF R A + LT++G Sbjct: 4 FGELQVFLRVVEEGSFSGAGRRLHLSPSTISKLIARMEARLGVRLFERVAGAIRLTQEGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +V +E + ++ + + SG +RI T + + L+ L L +P + + Sbjct: 64 RFRAAGEQVVQAMEEAEAGVRVADAEVSGTVRIHTALTTAKYLVAPRLPRLLDRHPRLHL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + D D AI +P + +LI R L+ AAP YL P + Sbjct: 124 DFVLGTERGDFIRQGLDVAIHSGRPTE-QTLIGRPLMARPWVIAAAPQYLARHGTPQRPE 182 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H + F D L T+D P + + N + + +LG G+ Sbjct: 183 DLLRHRCLNFTIRTQWNRWTFHDEGGLKTIDIP------NYIGANQGELLRTFALLGLGV 236 Query: 242 ALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + + + P L + E F Y YP +++A +F+ Sbjct: 237 VRLARFHIAGDLESGELVPLLTQYQERTEDDRF--YLLYPRGRSLAPRVRAVVDFL 290 >gi|254190856|ref|ZP_04897363.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|157938531|gb|EDO94201.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] Length = 320 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ + LET +G++L R R L LT +G+ Sbjct: 7 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E + P G++RI + + G++ L L EF YPDI + Sbjct: 67 AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQHRYPDITL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D + +D AIR + S L+ RKL M AP YL+ P + Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184 Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +LD+HN I P E+ L P L + SI + V G G+ Sbjct: 185 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 236 Query: 242 ALLPDYIVK---DNPNLVRIME 260 A L + V D LV ++E Sbjct: 237 ARLARFHVDADLDAGRLVPVLE 258 >gi|146306542|ref|YP_001187007.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145574743|gb|ABP84275.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 312 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 10/187 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A GSF+ AA +L L+ ++ISR ++ LE+ +G++LF R R LTLTE G Sbjct: 6 NLESFVRSAECGSFSAAARRLGLTPAAISRNVAQLESNLGVRLFQRSTRRLTLTEAG--- 62 Query: 67 HRVTSEVYHKLETTQ---IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R V LE+ Q +L S+ P+G LR++ G++ L + EFL YP + Sbjct: 63 ERFLGNVGGGLESIQAAIADLTTSAGAPAGMLRLSAAPAFGRDYLLPLMPEFLARYPAVS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180 + DN+ +++ D D AI + + ++ R+L H+ A+P YL R+P Sbjct: 123 PEWHFDNRQVELITDGFDAAIGGGIEL-TPGVVARELAPAHLVMVASPAYLAGRPAPRQP 181 Query: 181 LSIQELD 187 + E+D Sbjct: 182 GQLAEID 188 >gi|227820652|ref|YP_002824622.1| transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] gi|227339651|gb|ACP23869.1| transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 303 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT A+ L++ +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRVFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ L + P G+LR+ T ++ L EF YPDIQI L Sbjct: 67 ERAARLLSDIDELDGSLSSAQSLPKGRLRVETASAFANLIIIPALPEFQAKYPDIQIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ ID + DCAIR + SLI R++ + A+ +L+ P +L+ Sbjct: 127 VSDRTIDYLAENVDCAIR-GGTLTDQSLIARRITEMKFITCASRDFLERHPMPQHPSDLE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 K N G +PK + + R E I + N + + G G+ Sbjct: 186 K-NTHAVGYFLPKSGQQMRF--QFRRGNEEIEIDSRYAVAANEATTYVAAARAGMGVIQA 242 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V+D+ +V ++ D VY YP + +L+ F +++ Sbjct: 243 PFFMVRDDLRAGTMVPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWV 291 >gi|170751315|ref|YP_001757575.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657837|gb|ACB26892.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 322 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 12/289 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF V +GSF AA +L LS++++S+ +S LE +G +LF R +R L LTE G Sbjct: 15 DFEAWAVFAKVVETGSFGRAAAELGLSKATVSKAVSRLELRIGARLFNRTSRKLALTEAG 74 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + + +P G +R+A + G + L F YP + Sbjct: 75 QAAKDGAARILAEGEAAEALATAGAAEPRGLVRLAAPMTFGVMHVAPILPAFFREYPAVS 134 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D +R+ + SSL R+L I A P YL P Sbjct: 135 VDLHLSDAVVDLVGGGFDIGLRIAA-LPDSSLRARRLCEIRRSLVATPAYLDRHGRPEHP 193 Query: 184 QELDKHNLITFGDL-IPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H + + L P D + V P G+ L+ N+ ++ G G Sbjct: 194 DDLVRHTCLGYAYLPTPDRWRFVDGSGAEAVVVPAGQ-----LRANNAEALAPALRAGLG 248 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +AL PD+++ D+ L R++ P ++ P ++ A Sbjct: 249 LALQPDFMIWDDLESGRLERVLPAWSPPPIALHLVTPPGDPRPARVTAL 297 >gi|26249641|ref|NP_755681.1| transcriptional activator TtdR [Escherichia coli CFT073] gi|91212488|ref|YP_542474.1| transcriptional activator TtdR [Escherichia coli UTI89] gi|191172543|ref|ZP_03034083.1| HTH-type transcriptional activator TtdR [Escherichia coli F11] gi|237706178|ref|ZP_04536659.1| transcriptional activator TtdR [Escherichia sp. 3_2_53FAA] gi|26110069|gb|AAN82255.1|AE016767_15 Hypothetical transcriptional regulator ygiP [Escherichia coli CFT073] gi|91074062|gb|ABE08943.1| hypothetical transcriptional regulator YgiP [Escherichia coli UTI89] gi|190907211|gb|EDV66810.1| HTH-type transcriptional activator TtdR [Escherichia coli F11] gi|226899218|gb|EEH85477.1| transcriptional activator TtdR [Escherichia sp. 3_2_53FAA] gi|307555167|gb|ADN47942.1| HTH-type transcriptional activator TtdR [Escherichia coli ABU 83972] gi|320195222|gb|EFW69851.1| Putative transcriptional regulator LYSR-type [Escherichia coli WV_060327] Length = 326 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 27 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 86 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 87 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 146 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 147 LFDRQIDLVQDNIDLDIRINDAI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 205 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 206 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 262 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LVR++ + S ++ Y E L + KL+ F+ Sbjct: 263 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 308 >gi|15598034|ref|NP_251528.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107102388|ref|ZP_01366306.1| hypothetical protein PaerPA_01003450 [Pseudomonas aeruginosa PACS2] gi|218890964|ref|YP_002439830.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235827|ref|ZP_04929150.1| hypothetical protein PACG_01768 [Pseudomonas aeruginosa C3719] gi|9948924|gb|AAG06226.1|AE004710_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126167758|gb|EAZ53269.1| hypothetical protein PACG_01768 [Pseudomonas aeruginosa C3719] gi|218771189|emb|CAW26954.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 323 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V GSFT AA+ L S +++SRQ++GLE + +L R+ R + +TE G + + Sbjct: 7 IRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++++S SG+LR+ +LG L L ++L +PD+ + L Sbjct: 67 EHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + + D I L + + S+L+ R L + AAP YL P + ++L Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H + P C + W +R GE + L+VN + G G+ LL Sbjct: 187 RHRCLNVA--APSCPQ--GWAFVGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240 Query: 245 PDYIV 249 P ++ Sbjct: 241 PGFVA 245 >gi|288962388|ref|YP_003452683.1| transcriptional regulator [Azospirillum sp. B510] gi|288914654|dbj|BAI76139.1| transcriptional regulator [Azospirillum sp. B510] Length = 302 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 17/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F VAR SFT AA++L ++Q ++SR + L+ ++G++L R RG+ LT G+ Sbjct: 18 NAVRSFVAVARHLSFTRAADELAVTQGAVSRMMQTLQADLGVELIRRVGRGIELTPAGAA 77 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H E L+ ++ + + G LR++ L Q L LK F PDIQ++ Sbjct: 78 FH---GEASAALDRIAAAVRATRAQDGGVLRVSALPTLTQRWLIPRLKRFQAENPDIQVE 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +D + ++ D AIR + + L+ M + AP L + Sbjct: 135 VGIGEHRVDFAKEHIDIAIRYGVEEWPGAEMA-TLMPETMGVFCAPSLLDQGPPLRRPAD 193 Query: 186 LDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H L+ +W LA P+ E +S L + I++ G G+A Sbjct: 194 LASHRLLR------HTTRPDSWRVYLAAFGLPLPESALS-LAFEHFFMIIEAASAGMGVA 246 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 LLP ++ +++ LV+ +++ + P + + +++ F+ ++ +A Sbjct: 247 LLPVFLAREDVASGRLVQPIQETLRPRGRYLIAHAPGAERARRVRRFKEWLLSEA 301 >gi|255320593|ref|ZP_05361771.1| transcriptional regulator, LysR family [Acinetobacter radioresistens SK82] gi|255302355|gb|EET81594.1| transcriptional regulator, LysR family [Acinetobacter radioresistens SK82] Length = 309 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 11/273 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V SF+ AA +L ++ S++S+QI LE E+ + L +R R L+LTE Sbjct: 3 DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMEVILLHRSTRKLSLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G E+ E ++ + E + G LRIATT ++G L L ++ + + Sbjct: 63 GQAFFHSCREMLAAAERGKVRINELRDELVGDLRIATTPEIGAMHLVPALSHWISAHRGL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + +NK ID+ D A+R+ I+ S+L L + A+P YL N P+S Sbjct: 123 SVHFEAENKYIDLIEGRIDIAVRMSSKIEDSNLTAVPLARVEQILVASPSYL-NQSAPIS 181 Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240 E L H+LI + + F++ V + + + S L N+ L C G G Sbjct: 182 RPEDLKNHDLIPIN--VMNNYQQFSFQHGVTSEVVDLEMRSRLYSNNVLVAKSLCQHGHG 239 Query: 241 IA-LLPDYIVKD--NPNLVRIMEDVITPSFTVY 270 +A +L + KD N +LV ++ + P+FT+Y Sbjct: 240 LARILYLDVQKDLINGSLVEVLPEWKLPAFTLY 272 >gi|330990581|ref|ZP_08314538.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter sp. SXCC-1] gi|329762283|gb|EGG78770.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter sp. SXCC-1] Length = 302 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 9/297 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MSF+ D L F VAR+G F AA S S +S + LE +G +L +R R ++LT Sbjct: 1 MSFELDDLSAFVAVARAGGFREAARVSGFSASGLSEALRRLEARLGTRLLHRSTRSISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS+L S ++ + + +P+G +R+ ++ + +L G L FL+ +P Sbjct: 61 ETGSRLFAGLSPALAEISAALDTVHAQTDQPAGTIRLNVPANVARTVLPGILSPFLIAHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCRE 179 I++++ +++ +DI AD IR + ++ + + T + A AAP YL Sbjct: 121 QIRVEVTVEDSFVDILASGADAGIRYEERLEQDMIAVPIGPRTQRVLAAAAPSYLSAKGR 180 Query: 180 PLSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCV 236 P L +H + F P M +F V R + P +Q S ++ + Sbjct: 181 PQHPSALLEHACLRLRFSSGAP-AMWEFEKNGEVIR-LDPPGPLLVQPGSACDLLVDTAI 238 Query: 237 LGSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI L D++ + L ++ED P Y + L+AF +FI Sbjct: 239 AGLGIVCLFEDWLAPHIRSGALEVVLEDWAAPFSGPMLYYSGRRQLPPPLRAFVDFI 295 >gi|260429909|ref|ZP_05783884.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260418832|gb|EEX12087.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 299 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 8/294 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW + F +AR+G T AA++L + +++SR++ LE + +LF R G +LT Q Sbjct: 5 FDWGAMEWFLAIARTGRLTLAAQKLGIDHTTLSRRVKTLEEALDARLFDRTVSGYSLTPQ 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V ++ + + +G +RI G + L L P + Sbjct: 65 GERFLAAAQRVETIALQAASDISGETSRIAGTVRIGAPEGFGSSFLAPALVRLGQAQPGL 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L+ + ++ AD A+ L +P L KL + Y + YL+ P + Sbjct: 125 KLELVTLPRQFSLTKREADMAVSLARP-SKGRLHAHKLTNYELGLYGSHGYLRERGRPET 183 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L H ++ + DLI + +++ + R I L +S + M + G G+ Sbjct: 184 LSDLRHHGILGYIQDLI--YARELDYIPQLSRDIA----PWLTSSSLPAQMNMTLAGGGL 237 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +LP ++ D+ L +++ D + + + L++ +++ FI + R Sbjct: 238 CVLPRFLAHDHEGLEQVLPDEVRLVRSFWLVVHSELRDLSRIRICSEFITEEVR 291 >gi|237798901|ref|ZP_04587362.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021755|gb|EGI01812.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +G FT AAE+L+L+ S++S+ ++ LE+ +G++LF R R LTLTE+G+ H Sbjct: 14 IETFVAVANAGGFTAAAERLNLTNSAVSKSVARLESRLGMRLFERTTRRLTLTEEGAAYH 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + +LE + L ++P+G+LRI G+ + F + ++ ++ Sbjct: 74 VVCMRMLAELEAAETALAAQRMEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRVT 133 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P + + L R L T + AAP YL P + ++L Sbjct: 134 FTDRFVDILEEGIDLAVRIGGPQVWPAGLAHRYLGTERVIFCAAPAYLHRHGTPETFEDL 193 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 +H I FG WL ++ E R + L + + + + GIA L Sbjct: 194 ARHACILFGR---GDGSTSPWLFVDEQGQQETRAVEARLVIGNGEAQVAAVTSAWGIAQL 250 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++K+ LV I+ + T ++ +P ++ K++A Sbjct: 251 ATWLIKEQLQRGELVEILPQLATQGLDLHLAWPRNRESLPKVQAL 295 >gi|254255212|ref|ZP_04948528.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124900949|gb|EAY71699.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 393 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 142/289 (49%), Gaps = 15/289 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66 F VA GSFT AAE+L + + ++SR + LE ++ +LF R R LT +G + Sbjct: 83 AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGQRFFEN 142 Query: 67 -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H +++ + +EL++ P G LRI + + G+ ++ L++F YPDI I Sbjct: 143 CHPGVAQIVEAM-NDMLELRQG--PPRGLLRIGSAVGFGRKVVAPLLEKFANAYPDIVID 199 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD++ +D+ + D + R + I+ SS+I R+L+ + M AAP Y+ P S+++ Sbjct: 200 LLLDDRPLDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVAAHGLPRSVED 258 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H I F + E W VD + + + L N +++ + G+G+A L Sbjct: 259 LGRHACINFRASNGRVSE---WEFKVDGRVQKYTPTARLTFNDADLVLRAVLDGAGLAQL 315 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V+D LV + + Y CY +++ F +F+ Sbjct: 316 AGYQVRDPVARGELVVALANHAPDDRGHYICYLSRQHLPTRIRVFVDFM 364 >gi|262396725|ref|YP_003288578.1| transcriptional regulator [Vibrio sp. Ex25] gi|262340319|gb|ACY54113.1| transcriptional regulator [Vibrio sp. Ex25] Length = 295 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 29/305 (9%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S+IS+++ LE ++G++L R R ++ TE Sbjct: 1 MDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G L+I T+ +G L L +FL YPD Sbjct: 61 AGALFYQRAKNQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120 Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I +QL L + ++S+D R + + S S L YAAP YLK Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYGT 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-- 237 P +++L +HN++ +G+ R I R + ++ + L Sbjct: 179 PQCVEDLTEHNVLIWGE-------------KPSREIKTNRGKRISLSGNFATTNPEALFH 225 Query: 238 ----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI + + ++KD+ LV I+ D+ TVY YP+ + K F + Sbjct: 226 GAKRGMGILMTNNVMIKDDLKSGALVPILPDITADKATVYAYYPKLDYQHTRTKLFLD-- 283 Query: 291 FLKAR 295 +LK+R Sbjct: 284 YLKSR 288 >gi|254459584|ref|ZP_05073000.1| transcriptional regulator, LysR family [Rhodobacterales bacterium HTCC2083] gi|206676173|gb|EDZ40660.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium HTCC2083] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 135/301 (44%), Gaps = 24/301 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LR + R G+ T AAE+L L+QS++SRQ+ LE ++G L R R + +T+ G+ Sbjct: 16 SLRALEALDRLGTATAAAEELSLTQSAVSRQLQILEEQLGAPLITREKRRMHMTDAGA-- 73 Query: 67 HRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R SEV L + V+P +G L +A G L L +F L+PD+ + Sbjct: 74 -RYASEVRTALSLIARAAMQLHVQPGAGGLSLAILPSFGMRWLVPRLAQFAGLHPDVTVN 132 Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 L + + + D AI QS L + L+ + AP +L R PL Sbjct: 133 LSTRMEAVQFQAEPFDAAIHYGNGHWDECQSMLLREETLIPV-----CAPDFLD--RLPL 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 E + + P+ WLA+ + P P ++ Q + + +I Q + G GI Sbjct: 186 DSAEALCTLPLLHIETRPEAWR--RWLASHNAP--PPSLAGAQFDQFSTITQAAIHGLGI 241 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV---YFCYPEALKNTGKLKAFRNFIFLKA--RD 296 ALLPD+I + R++ P+ ++ Y +P + L FR++I +A D Sbjct: 242 ALLPDFIAEQELRAGRLVTAFGGPTRSIGAYYLVWPNSNAQNPTLALFRDWISTQAEGED 301 Query: 297 W 297 W Sbjct: 302 W 302 >gi|149921750|ref|ZP_01910197.1| putative Transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] gi|149817401|gb|EDM76874.1| putative Transcriptional regulator, LysR family protein [Plesiocystis pacifica SIR-1] Length = 302 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 8/258 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VAR G+F AA L L+++++S Q+ LE E+G++L R R +LT+ G Sbjct: 3 VFAEVARLGNFAAAARHLGLTRAAVSHQVKRLEDELGVRLLNRTTRSQSLTDAGQVFLAS 62 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +L+ + +P+ +R+ +++LG + L F LYP ++I L + Sbjct: 63 CEAIATELDVVNRRMDNIRTEPAATIRLTCSVNLGLQAVVPALSAFHELYPKVEIDLTMT 122 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI + D AIR K + S L+ R L A+P YL+ P ++EL H Sbjct: 123 DDIVDIVAEGIDIAIRGGK-LADSELMARSLGRSRYRICASPEYLQARGRPQKVEELGGH 181 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + P G L+ N+ S + + + G G+A LP+Y + Sbjct: 182 AWVVYTLGKRTLTLSARGQTHTLTPAGP-----LRTNNAASRLYFTLRGHGLARLPEYDL 236 Query: 250 KDNPNLVRIMEDVITPSF 267 +P L + + P + Sbjct: 237 --SPRLASGELEAVLPDY 252 >gi|167824166|ref|ZP_02455637.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] gi|167918938|ref|ZP_02506029.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|226197400|ref|ZP_03792977.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254260124|ref|ZP_04951178.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|225930779|gb|EEH26789.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254218813|gb|EET08197.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + + Sbjct: 11 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +QS + + + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQSGMVGVKIAPALTCALVATPGYLAQHGVPSKLADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|17546448|ref|NP_519850.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428746|emb|CAD15431.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 15/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT Sbjct: 1 MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + ++ +E Q ++S G+LR+ + + ++ L FL +P Sbjct: 61 QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I+L ++ +D+ + DC +R+ + SSLI R L + A+P Y+ P Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGT-LGDSSLIARPLGQLPQMNCASPAYIARYGMP 179 Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235 S+ +LD H L+ T G P W +D R P + V++ S C Sbjct: 180 RSLDDLDHHRLVHYVQTLGTKAP------GWEYRIDGRTAHRPMPGVVTVSTAESYEAAC 233 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI P ++ LV ++ V YP +++ F +++ Sbjct: 234 QAGLGIIQAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWV 291 >gi|254241505|ref|ZP_04934827.1| hypothetical protein PA2G_02203 [Pseudomonas aeruginosa 2192] gi|313107980|ref|ZP_07794149.1| putative ranscriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|126194883|gb|EAZ58946.1| hypothetical protein PA2G_02203 [Pseudomonas aeruginosa 2192] gi|310880651|gb|EFQ39245.1| putative ranscriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 323 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V GSFT AA+ L S +++SRQ++GLE + +L R+ R + +TE G + + Sbjct: 7 IRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++++S SG+LR+ +LG L L ++L +PD+ + L Sbjct: 67 EHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + + D I L + + S+L+ R L + AAP YL P + ++L Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H + P C + W +R GE + L+VN + G G+ LL Sbjct: 187 RHRCLNVA--APSCPQ--GWAFAGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240 Query: 245 PDYIV 249 P ++ Sbjct: 241 PGFVA 245 >gi|218560147|ref|YP_002393060.1| transcriptional activator TtdR [Escherichia coli S88] gi|218691365|ref|YP_002399577.1| transcriptional activator TtdR [Escherichia coli ED1a] gi|227887783|ref|ZP_04005588.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|300973240|ref|ZP_07172079.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|300977458|ref|ZP_07173921.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|301048104|ref|ZP_07195142.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|306816586|ref|ZP_07450718.1| transcriptional activator TtdR [Escherichia coli NC101] gi|331659350|ref|ZP_08360292.1| HTH-type transcriptional activator TtdR [Escherichia coli TA206] gi|331684711|ref|ZP_08385303.1| HTH-type transcriptional activator TtdR [Escherichia coli H299] gi|118574171|sp|Q8FDH0|TTDR_ECOL6 RecName: Full=HTH-type transcriptional activator ttdR gi|118574172|sp|Q1R6S1|TTDR_ECOUT RecName: Full=HTH-type transcriptional activator ttdR gi|218366916|emb|CAR04687.1| putative DNA-binding transcriptional regulator [Escherichia coli S88] gi|218428929|emb|CAR09878.2| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|222034792|emb|CAP77534.1| HTH-type transcriptional activator ttdR [Escherichia coli LF82] gi|227835179|gb|EEJ45645.1| LysR family transcriptional regulator [Escherichia coli 83972] gi|281180114|dbj|BAI56444.1| putative transcriptional regulator [Escherichia coli SE15] gi|294493058|gb|ADE91814.1| transcriptional regulator, LysR family [Escherichia coli IHE3034] gi|300300024|gb|EFJ56409.1| LysR substrate binding domain protein [Escherichia coli MS 185-1] gi|300308316|gb|EFJ62836.1| LysR substrate binding domain protein [Escherichia coli MS 200-1] gi|300410820|gb|EFJ94358.1| LysR substrate binding domain protein [Escherichia coli MS 45-1] gi|305850151|gb|EFM50610.1| transcriptional activator TtdR [Escherichia coli NC101] gi|307625325|gb|ADN69629.1| transcriptional activator TtdR [Escherichia coli UM146] gi|312947631|gb|ADR28458.1| transcriptional activator TtdR [Escherichia coli O83:H1 str. NRG 857C] gi|315288828|gb|EFU48226.1| LysR substrate binding domain protein [Escherichia coli MS 110-3] gi|315295026|gb|EFU54363.1| LysR substrate binding domain protein [Escherichia coli MS 153-1] gi|315297754|gb|EFU57031.1| LysR substrate binding domain protein [Escherichia coli MS 16-3] gi|323951406|gb|EGB47281.1| LysR substrate binding domain-containing protein [Escherichia coli H252] gi|323957779|gb|EGB53493.1| LysR substrate binding domain-containing protein [Escherichia coli H263] gi|324005366|gb|EGB74585.1| LysR substrate binding domain protein [Escherichia coli MS 57-2] gi|324011993|gb|EGB81212.1| LysR substrate binding domain protein [Escherichia coli MS 60-1] gi|330909126|gb|EGH37640.1| putative transcriptional regulator LYSR-type [Escherichia coli AA86] gi|331053932|gb|EGI25961.1| HTH-type transcriptional activator TtdR [Escherichia coli TA206] gi|331078326|gb|EGI49532.1| HTH-type transcriptional activator TtdR [Escherichia coli H299] Length = 310 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDAI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LVR++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|330937149|gb|EGH41195.1| LysR family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 304 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 13/273 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F AR+GSFT AA++L +++S++ + I+ LE +G KLF+R R L LT G Sbjct: 13 IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S ++ + L + P G+LRI G++++ L + L P +++ + + Sbjct: 73 CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID+ + D +IR +S L+ R+L AAP Y++ P S ++L +H Sbjct: 133 DSVIDLIEEGVDLSIRFGALKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192 Query: 190 NLIT---FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 I G + +++ LA + P +V +I+ G GI +P Sbjct: 193 RCIVNYRRGQRVSWTVLDESGELARITPP------GTHEVGDGDAIIAMAAAGPGICQMP 246 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 +++D + LV ++E ++ +P+ Sbjct: 247 GSLIRDHLKDGRLVPVLEKYHPDDVAIHAVWPQ 279 >gi|261342103|ref|ZP_05969961.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] gi|288315434|gb|EFC54372.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] Length = 294 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 24/294 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR F V SGSFT AA +L +S + + I+ LE+ +G +L R+ R +LT+ Sbjct: 2 DKLRGMETFIAVVESGSFTGAASRLEMSAVMVGKYIAQLESRLGTRLLERNTRRQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V ++ + ++ P+G LR+ G ++ FL YP + Sbjct: 62 GRVYYDEAKRVLEQVTIAESAVERLRATPAGTLRVTAPTSFGGCVIAPLTATFLQRYPQV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L N+ +D+ + D AIR+ + + ++ + L M AAP YL P + Sbjct: 122 RVELDLTNRRVDLVEEGVDLAIRI-GDMHADDVVAKYLCPYRMVICAAPDYLARYGTPQT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235 +L H C+ W A V+ + R + L+ N + Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAVLRCNDGYGLRMAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+G+ L P+ +V + + LVR++E V + + L+ KL F Sbjct: 231 RAGAGLLLQPEVLVAEELASGRLVRVLEHYTPTPRPVNLLWRQDLRPLPKLTEF 284 >gi|170740203|ref|YP_001768858.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194477|gb|ACA16424.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 307 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 10/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L + +A +G+ + AA+ LS ++ SR ++ LE +G+ L R+ R L+LT++G K Sbjct: 6 QLELLVAIAEAGTISGAAQARGLSVAAASRTLAALEERLGVLLVRRNTRTLSLTDEGGKF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ E+ +++ PSG LR++ ++ G + L + YP++++ + Sbjct: 66 LARARGILADVADSEAEVTGAALDPSGLLRVSASLSFGLLHIAPLLPAYHARYPNVRVHV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ +D+ D AIR R+ ++ R+L AP YL P ++L Sbjct: 126 EISNRYVDLIDAGIDVAIRTREFEPDRAITIRRLAETRRILTGAPSYLARAGCPAHPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H L LI + N L + + P L+ N + + G G+ + Sbjct: 186 ARHAL-----LIYVYANNPNELTFTRGEETVRVPAHGLLESNDGQILRAAALNGLGLLVQ 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P YIV D+ LV +++ P + F YP + K+++F F+ Sbjct: 241 PTYIVHDDVAAGRLVPVLDAWDLPRLRINFAYPTRKHLSAKVRSFIAFM 289 >gi|167620283|ref|ZP_02388914.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257139347|ref|ZP_05587609.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 301 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 9/295 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F YP + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGAPERP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ P+ W +P+ + L N + + G+GIAL Sbjct: 184 ADLLAHRCIVMGEQ-PR----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V + L R++ + + + ++ YP +++ F +++ ++ R Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELR 293 >gi|325525084|gb|EGD02979.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 290 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 132/285 (46%), Gaps = 10/285 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF + R + AA+ L + Q+++ R+++ LE ++G LF R ++G T Sbjct: 1 MNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHQLGATLFLRSSKGYLPTPV 60 Query: 63 GSKLHRVTSEV-YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G R + H E ++ Q + +G +++ TT L + ++ +PD Sbjct: 61 GELALRAAEAMEQHAHELVRLT-QGVDRRLAGDVKVTTTDALAIEFVMPSIARLHAKHPD 119 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + L + ++++ AD A+R +P + L+ R+L M +A+P YL+ EP Sbjct: 120 VCVSLNTSTQVLNLAKREADIAVRTVRP-ANPDLVARRLARWDMGLFASPDYLQRHGEPT 178 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H+L+ + I A PIG+ RI ++NS L + G GI Sbjct: 179 RGTAFAGHDLVVYQPYIDASRRP----AIAGEPIGDARIVA-RMNSSLMMRAALRAGLGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKA 285 +P Y+ + LVR+ + + + V+ L++T +++A Sbjct: 234 GEIPVYM-GERDGLVRVWPGQLREAPYEVWLVTHRDLRHTARIRA 277 >gi|299532623|ref|ZP_07046012.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298719426|gb|EFI60394.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 313 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 18/301 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F V G F A L + +S +SR+++ LE +G++L R R L+LT+ G Sbjct: 3 DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R + + E +P G +R+ + L Q +L + EFL P +Q Sbjct: 63 ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ + N+ +++ + D A+R+R ++ S S++ ++L + A+P L+ P S Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +++L + + ++ + L V P G+ LQ V+ L++ + G Sbjct: 183 LEDLQLLDSMAM-----TAVDGHSSLLLVG-PEGKEHRLQLQPRYVVDDLLTLKFAALAG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294 SG+ LPDY+ +D LV+++ P V+ +P G A R+F+ FL Sbjct: 237 SGMCWLPDYMCQDELTRGTLVQLLPQWAPPRGIVHAVFP---SRRGLAPAVRHFLDFLGE 293 Query: 295 R 295 R Sbjct: 294 R 294 >gi|220925824|ref|YP_002501126.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950431|gb|ACL60823.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 296 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 14/262 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R V GS + AA L L+Q +I RQI+ LE +G+ LF R GLT TE G Sbjct: 6 WDHCRAALAVLEEGSLSAAARALGLTQPTIGRQIAALEETLGVVLFTRSQAGLTPTEAGL 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + + + +G +RI + +G +L L +P + + Sbjct: 66 ALRPYAEALRATASALERAVTAAGEGVAGTVRITASEVVGGEVLPPILARLHEAHPALTL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L ++ D+ AD A+R+ P+Q ++L+ RK+ ++ + +A YL P + Sbjct: 126 ELVLSDRVQDLLRRDADIAVRMTAPLQ-AALLARKVGSVRLGLHAHRRYLDRRGTPAAAA 184 Query: 185 ELDKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H+LI F L +E ++ DR + + +S L+ + G G Sbjct: 185 DLPRHSLIGFDAETAFLRSMRIEGVDF----DRA-----LFAWRSDSALAQLAAIRAGFG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDV 262 I + + NP+LV ++ ++ Sbjct: 236 IGVCQAALAARNPDLVPVLPEI 257 >gi|330976533|gb|EGH76583.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 304 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 13/273 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F AR+GSFT AA++L +++S++ + I+ LE +G KLF+R R L LT G Sbjct: 13 IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S ++ + L + P G+LRI G++++ L + L P +++ + + Sbjct: 73 CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID+ + D +IR +S L+ R+L AAP Y++ P S ++L +H Sbjct: 133 DSVIDLIEEGVDLSIRFGALKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192 Query: 190 NLIT---FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 I G + +++ LA + P +V +I+ G GI +P Sbjct: 193 RCIVNYRRGQRVSWTVLDESGELARITPP------GTHEVGDGDAIIAMAAAGQGICQMP 246 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 +++D + LV ++E ++ +P+ Sbjct: 247 GSLIRDHLKDGRLVPVLEKYHPDDVAIHAVWPQ 279 >gi|330863503|emb|CBX73620.1| HTH-type transcriptional activator aaeR [Yersinia enterocolitica W22703] Length = 297 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 30/251 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LE+E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGRIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ +L + P+G LRI + + QN+L E L YP + + L+ Sbjct: 61 QGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK----- 174 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQY 234 P M +F+WL RP + P Q+ N +++++ Sbjct: 175 -----------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIRW 223 Query: 235 CVLGSGIALLP 245 G+GIA P Sbjct: 224 LKAGAGIAYAP 234 >gi|269963744|ref|ZP_06178063.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831537|gb|EEZ85677.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 294 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 134/278 (48%), Gaps = 19/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF VA SFT AA+ L + ++ +S+ +S LE + +L +R R L+LT+ G + Sbjct: 5 DDMMVFAKVAEKQSFTQAADDLDIGKARVSQIVSKLEQALNTRLLHRTTRSLSLTDAGLR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E Q+++ PSG +RI+T + L L EFL LYP+I++ Sbjct: 65 YYEKCKLIGDIASEANAETQDANQIPSGTIRISTP----SSALVDILSEFLHLYPEIKLD 120 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE---PLS 182 +I + ++ D A+R ++ SSL +L A P YL + P Sbjct: 121 IIESDSYSNLIESRCDIALRASSALEDSSLYAVRLGYFRDMICATPTYLSKVEKVSTPED 180 Query: 183 IQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + LD H+++ GD K + N V R + P++ QV + ++ ++ + G Sbjct: 181 LLALDWISHHIV-HGD---KQLTMTNSQGQVTRLVHSPKV---QVRTAAAVKEFVLNHLG 233 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 A++P +++K+ +LVRI+ DV +Y Y E Sbjct: 234 FAIMPSFMMKEELARGDLVRILPDVHDLEIPIYAVYQE 271 >gi|239817713|ref|YP_002946623.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239804290|gb|ACS21357.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 314 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 22/290 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F + +GS + AA Q+ +Q ++SR++ LE +G++L R + LTE G + + Sbjct: 15 MQTFVHIVEAGSLSAAALQMGATQPTVSRRLQALERSLGVRLLRRSTHAMKLTEDGERCY 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + +L+ +P G LR+ LGQ LL G L ++L YP + ++ + Sbjct: 75 ERARELLADWHAFEADLRGVGDEPEGTLRVVAPHALGQLLLVGPLADYLRAYPRVSVEWL 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ D + DCAI++ + + + + KL + AAP L P EL Sbjct: 135 LNDRRPDFIAEGVDCAIQVGE-VTDTLAVALKLSEVPRVVVAAPSVLAGRAPPAHPSELA 193 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLGSG 240 + + N + RP GE PR+S +S ++ +G G Sbjct: 194 ELPWLALRTFY------RNEVLLTHRPSGEVARVPIRPRMS---TDSLYALQSAARMGLG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAF 286 + ++V ++ R+++ V + P VY YP + +L+ F Sbjct: 245 ACMASAWLVNEDIAAGRLVQLVPQWHVAP-LPVYLIYPPSRFQPARLRRF 293 >gi|163757519|ref|ZP_02164608.1| transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162285021|gb|EDQ35303.1| transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 293 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 140/298 (46%), Gaps = 12/298 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ LR F VA +GS T AA +L +SQ SI R I+ LE + ++LF R RG L E+ Sbjct: 1 MDWNLLRSFLAVAETGSLTAAAVRLGMSQPSIGRHIAELERLLDMQLFRRGPRGQELNER 60 Query: 63 GSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L + + ++I L S +G +R+ + +G +L + E P Sbjct: 61 GLDLLNEVRRMGDAADALSRIALGHSQ-SLTGTVRVTASEVIGALVLPRLVAELRQQEPL 119 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+I+++ N ++ AD AIR+ +P Q L+ R + I + A+ Y +P Sbjct: 120 IEIEIVASNSLGNLLKRDADIAIRMTRP-QQLDLVIRHIGDIPLVPCASSDYFARAGKPQ 178 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS--YLSIMQYCVLGS 239 +++L H LI + +A + R + S +V S +L + + G+ Sbjct: 179 RLEDLAAHELIGYD-------RSDGIIAGLARAGIKINRSSFKVRSDNHLVLWEALRAGA 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 GI+ +V +P+L +ED+ P Y L+++ +++ +++F R++ Sbjct: 232 GISFAQAPLVAGDPDLETCLEDMELPRLETYLTMHSDLRHSPRIRYVADYLFKAMRNY 289 >gi|13474213|ref|NP_105781.1| LysR family transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14024965|dbj|BAB51567.1| transcriptional regulator (LysR family) [Mesorhizobium loti MAFF303099] Length = 296 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 23/295 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-- 64 +L V VA+ GSF AA +L ++ S++S +S LE +G++L R R + TE+G+ Sbjct: 8 QLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGAQL 67 Query: 65 --KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +L SE+ LET E+ +P+G LR++ +L L F YPDI Sbjct: 68 LERLRPALSEIDLALETA----LEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAYPDI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++++++ D+ D +RL + +Q + R + AP Y P Sbjct: 124 VLEILIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDMRGAVVGAPSYFAAMPRPHH 183 Query: 183 IQELDKHNLITF----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++L H I F G L + W A I L ++ I Q + Sbjct: 184 PRDLADHRCIRFRFSSGIL-------YRWEFAKGGEEIEIAAQGPLILDEDHLIAQAAID 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+G+A + + V+ + L+R++ED P + YP + L+AF +F Sbjct: 237 GTGLAFVFEPYVRAPLADGRLIRVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDF 291 >gi|317401396|gb|EFV82030.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 307 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 139/293 (47%), Gaps = 20/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++ + G+ + AA +L L+ ++S +++ LE +G++L R R +++T++G Sbjct: 7 LAFFSLLVKHGNLSAAARELGLTPPAVSTRLAKLEQRLGVRLLNRSTRRVSVTQEGELYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + L+ + + S +P G LR+ T G+ + + +F YP++++QL Sbjct: 67 AEGSRILADLQALERSVSSSRAQPQGLLRLNATFGFGRAHVAPAISDFARQYPEVEVQLR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D A+R + + L RK+ + A+P YL+ EP + EL Sbjct: 127 LTDRPLNLIEEGFDAAVRF-GDLPDARLTARKIASNRRLLCASPRYLETFGEPRTPGELQ 185 Query: 188 KH-------NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H N + +G +E + TV + P + N S +++ + G G Sbjct: 186 RHRCIVVRENDVAYGTW---RLESGSRTETVK--VRGP----VSSNDGQSALEWALDGHG 236 Query: 241 IALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + ++ + L +++ D TP ++ YPE L K AF +F+ Sbjct: 237 IVMRSEWETAALLRAGRLRQVLTDWATPPADIHVLYPERLNLPAKTLAFVDFL 289 >gi|299066748|emb|CBJ37942.1| putative transcription regulator protein, HTH-type [Ralstonia solanacearum CMR15] Length = 309 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 15/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT Sbjct: 4 MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 63 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + ++ +E Q ++S G+LR+ + + ++ L FL +P Sbjct: 64 QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARRVVIPALPAFLDAHP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I+L ++ +D+ + DC +R+ + SSLI R L + A+P Y+ P Sbjct: 124 QLEIELSSTDRRVDLVREGFDCVLRIGT-LGDSSLIARPLGQLPQMNCASPAYIARYGMP 182 Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235 S+ +LD H L+ T G P W +D R P + V++ S C Sbjct: 183 RSLDDLDHHRLVHYVQTLGTKAP------GWEYRIDGRTAYRPMPGVVTVSTAESYEAAC 236 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI P ++ LV ++ V YP +++ F ++I Sbjct: 237 QAGLGIIQAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWI 294 >gi|293606574|ref|ZP_06688931.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292815050|gb|EFF74174.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 302 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GS T AA + +S + ++ I LET +G++L R R +LTE G + Sbjct: 7 MEVFVAVVEQGSLTAAATRHEMSTAMAAKHIKALETRLGLRLMNRTTRRQSLTEAGQAYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + P G LR+ +++ G L + ++L +YPD+ ++L+ Sbjct: 67 ARCKTILGDIRDAEQGAEALRLTPRGHLRVTSSVTFGSFELAPAIADYLSVYPDVSVELV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + DI D A+R+ +P S L+ R + M AAP YL+ P + +L Sbjct: 127 LSDVVEDIVAARYDVAVRIGEP-ADSGLVARTIGRYQMVICAAPAYLERYGTPATPDDLM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H + F + W T D G P + N+ ++ Q + G G+ L P Sbjct: 186 QHQCLDFSYWSRRT----GWQLTGDDGSQAGYPTGRFVS-NNGQALRQAALAGFGVVLQP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ ++ LV I++ + V Y + + KL F +F+ Sbjct: 241 ELLLGEDMRAGRLVPILQSFWPVARPVTLLYQKDRQALPKLTTFVDFL 288 >gi|21229521|ref|NP_635438.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766393|ref|YP_241155.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188989443|ref|YP_001901453.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris str. B100] gi|21110985|gb|AAM39362.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571725|gb|AAY47135.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167731203|emb|CAP49375.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris] Length = 296 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 134/301 (44%), Gaps = 22/301 (7%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR +F V R GSF AA +L L+++ +S + LE +G+ L YR R +LT Sbjct: 5 DELRAMAIFATVVRCGSFAAAARELALTRAVVSHHVGALEARLGVPLAYRSTRSFSLTPA 64 Query: 63 GS--KLH--RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G ++H R+ E L ++ E P G++R+ + G + L F Sbjct: 65 GEAFRVHCERLLDEASDGLRGMELLRAE----PQGEVRLTCSHHFGNKRILPALLAFRRR 120 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP I++ + + + ++D+ D A+R P+ S+L R LV A+P Y+K Sbjct: 121 YPAIRLHIAMGDANVDLVQQGVDLAVRA-GPLPDSTLYARPLVREATLLCASPAYVKRYG 179 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P + L +H + + P +R I P + +S +S + + + G Sbjct: 180 MPTTAAALKEHRWVIY----PPSQRQTQIQIDGER-IDIPVQGDIVTDSAVSRLAFVLAG 234 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIA LP Y LV+++ T +Y + + + + +L R+F+ AR Sbjct: 235 EGIARLPGYDAAAPLAAGELVQVLPQAQTAPLEIYLVHSKKIGPSARL--LRDFLLEVAR 292 Query: 296 D 296 + Sbjct: 293 E 293 >gi|323499612|ref|ZP_08104581.1| transcriptional Regulator [Vibrio sinaloensis DSM 21326] gi|323315352|gb|EGA68394.1| transcriptional Regulator [Vibrio sinaloensis DSM 21326] Length = 294 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 11/243 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F VA S F+ AA+ L S S +SRQ+S LE VG+ L R R ++LTE G Sbjct: 4 FEGINEFVAVAESQGFSAAAKLLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTEAGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R ++ L+ +L ++ +G LR++ +N + L F YP++ I Sbjct: 64 IYYRQCKDLVTGLQQANEQLSSQQIELNGILRVSAAGAFAENHVAPALMLFAQQYPNLTI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +++ ++ D D AIR + + S L+ RKLV M A A+ YL P + Sbjct: 124 EMDFNSRMVNFIEDGVDFAIRYGR-LTDSGLVARKLVDRPMAAAASQEYLDQYGCPSHPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L +H+ I + +WL +P+ R+ + N+ +++Q C G GI Sbjct: 183 QLKQHSCII--------ANNDHWLFEEQGKPLNALRVHGRWRSNNSTAVIQACEQGLGIV 234 Query: 243 LLP 245 LP Sbjct: 235 YLP 237 >gi|294011967|ref|YP_003545427.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292675297|dbj|BAI96815.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 299 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 136/286 (47%), Gaps = 9/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V +GSF+ AA L + Q ++S+ ++ LE + ++L R R L TE G + Sbjct: 11 MEVFVRVVETGSFSAAARDLRIGQPAVSKLVAALEDRLQVRLLVRSTRQLHPTEAGQAFY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + G+LR+ ++ + + + FL +P++++ + Sbjct: 71 ERARRTLAEADEAETAARGLGKGLDGRLRVCASVTFARLHIVPRIGAFLDAHPNLRVDFV 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D++ ID+ + D A+R + + SSL RKL T + A+P YL P + +L Sbjct: 131 MDDRYIDLLGENIDVALRAGE-LPDSSLTTRKLATCDRYVVASPAYLTRMGTPSAPSDLL 189 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H I + + E++ + AT D + P + L ++ + + + G G+A+ Sbjct: 190 DHTAIVYTQGL--VAEEWRFRRATADTSVRIP--TRLSFSAAEGVREAVIAGLGLAISSR 245 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 ++++ + ++V ++ D PS ++ YP T K +AF N+ Sbjct: 246 WMMEPELASGSVVPVLTDWKLPSADLWALYPSGRLPTAKARAFVNW 291 >gi|257485983|ref|ZP_05640024.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330891711|gb|EGH24372.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|330988647|gb|EGH86750.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010307|gb|EGH90363.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 306 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R R L LTE+G+ H Sbjct: 14 IETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + LE + L +P+G+LRI G+ + F + ++ ++ Sbjct: 74 AVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 133 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P + + + R L T + AAP YL+ P + ++L Sbjct: 134 FTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGVPTTFEDL 193 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 H I FG WL D+ E R + L + + + + GIA L Sbjct: 194 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 250 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++++ LV I+ + T ++ +P ++ K++A Sbjct: 251 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 295 >gi|118587722|ref|ZP_01545132.1| Transcriptional regulator [Stappia aggregata IAM 12614] gi|118439344|gb|EAV45975.1| Transcriptional regulator [Stappia aggregata IAM 12614] Length = 292 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 9/288 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ LR F+ V+ +GS AAE+L +S ++ R I LE ++G +LF + TE Sbjct: 1 MDWNYLRTFHAVSEAGSLAKAAEKLAISHATAFRHIRSLEEQLGSRLFEKVKGRYRATEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+++ + V +E + + + G++R+ + L G L +F +PDI Sbjct: 61 GAEILDLAQSVVVAMEDIDRRISGADLALKGRIRLTAPASFAVHFLPGYLLDFKARFPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ N++I++S A+ A+R+ LI RK+ I +A+ YL P S Sbjct: 121 TVELLTSNEEINMSSRAAEIALRVTSS-PPEHLIGRKVADIPWAYFASQSYLDRKSIPAS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H+LI L+ + +DR + + RI ++ + ++ G G+ Sbjct: 180 AGDLSSHDLIGASGLLAQR----PGFIQMDRSLRD-RI-VVRSDDLTTMAALARKGLGLC 233 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP + +D + I +V P+ ++ L++ ++ F+ Sbjct: 234 LLPMDVAQDGLKKLAIATEV--PANELWVLTHPDLRSVERVACMARFL 279 >gi|221067424|ref|ZP_03543529.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220712447|gb|EED67815.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 314 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/301 (24%), Positives = 141/301 (46%), Gaps = 18/301 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F V G F A L + +S +SR+++ LE +G++L R R L+LT+ G Sbjct: 3 DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R + + E +P G +R+ + L Q +L + EFL P +Q Sbjct: 63 ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ + N+ +++ + D A+R+R ++ S S++ ++L + A+P L+ P + Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +++L + + ++ + L V P G+ LQ V+ L++ + G Sbjct: 183 LEDLQLLDSMAM-----TAVDGHSSLLLVG-PEGKEHRLQLQPRYVVDDLLTLKFAALAG 236 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294 SG+ LPDY+ +D N LV+++ P V+ +P G A R+F+ FL Sbjct: 237 SGMCWLPDYMCQDALNQGTLVQLLPQWAPPRGIVHAVFP---SRRGLAPAVRHFLDFLGE 293 Query: 295 R 295 R Sbjct: 294 R 294 >gi|53725283|ref|YP_102793.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|67641372|ref|ZP_00440152.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|121598414|ref|YP_992871.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124386275|ref|YP_001026210.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126453195|ref|YP_001066001.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|167003149|ref|ZP_02268939.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|167738858|ref|ZP_02411632.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167845986|ref|ZP_02471494.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167894564|ref|ZP_02481966.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167911204|ref|ZP_02498295.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|167919227|ref|ZP_02506318.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] gi|242317088|ref|ZP_04816104.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254177818|ref|ZP_04884473.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254188577|ref|ZP_04895088.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254199741|ref|ZP_04906107.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254206065|ref|ZP_04912417.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254261080|ref|ZP_04952134.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|254297843|ref|ZP_04965296.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|254358436|ref|ZP_04974709.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52428706|gb|AAU49299.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] gi|121227224|gb|ABM49742.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|124294295|gb|ABN03564.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126226837|gb|ABN90377.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|147749337|gb|EDK56411.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147753508|gb|EDK60573.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|148027563|gb|EDK85584.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|157806982|gb|EDO84152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157936256|gb|EDO91926.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|160698857|gb|EDP88827.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|238522295|gb|EEP85740.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|242140327|gb|EES26729.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|243061245|gb|EES43431.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254219769|gb|EET09153.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 301 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W P + N + + G+GIAL Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296 Query: 298 KF 299 ++ Sbjct: 297 RW 298 >gi|254505501|ref|ZP_05117648.1| transcriptional regulator [Vibrio parahaemolyticus 16] gi|219551618|gb|EED28596.1| transcriptional regulator [Vibrio parahaemolyticus 16] Length = 307 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 10/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L++S+S +SRQIS LE ++G+ L R R L LT+ G + Sbjct: 10 IRSFVLIAQLGNFTKAAEALNVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGRLFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ E + G +++ A LG+ L+ + EF++ +P++ + L Sbjct: 70 QQCAHALGTIDQALSAATEDTETLQGMIKVNAVGGYLGEELVADLISEFMISHPNVTVSL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ + ++ + + RKL+T+ M A+P YL + P +L Sbjct: 130 EFSSHRVDLIEDEFDIAFRMGQ-LEDAGFVARKLMTVEMGTLASPSYLASSPPPEHPNQL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +T G + E + +D I L+ + +++ + GI +P Sbjct: 189 RHHQCLT-GSVTRWSFEHPSTKQVMDVNIN----GHLKCKNGRVLVKGALKDHGIIRVPL 243 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 ++ L + +D PS YP+ +LK F +F Sbjct: 244 IYCQEELKQGALKEVFQDWRVPSVEFSMIYPKDRYQPKRLKLFISF 289 >gi|320182033|gb|EFW56938.1| Putative LysR-like transcriptional regulator [Shigella boydii ATCC 9905] Length = 302 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 132/295 (44%), Gaps = 12/295 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAAQVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++L D+ +DI D +RL ++ + + + A P Y +P Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVASGPPVKLCVAATPEYFARYGKP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H + F P + F+W + I + ++ + ++ ++G+G Sbjct: 181 RHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEAVLMGAG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290 I L +K D L ++ED T P F +Y YP + L+AF +++ Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDYV 288 >gi|254295211|ref|YP_003061234.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043742|gb|ACT60537.1| transcriptional regulator, LysR family [Hirschia baltica ATCC 49814] Length = 294 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 125/262 (47%), Gaps = 18/262 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + F VA+ G+F AAE L S S +SR + GLE + LF+R R +TLT+ G Sbjct: 4 WLGIEEFVAVAKRGNFKLAAEYLGQSTSHVSRAVMGLEDRIHAPLFFRSTRQVTLTDTGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L ++ + + + S +P G+LR+ ++ +G+ + L + +P++ + Sbjct: 64 ALFEQCRQLVDDRDEA-LAMVTGSGEPQGELRVTCSMSMGERFIAPILLRYAEQFPNVSV 122 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L N+ ID++ + D AIR + S L+ ++ + + AAP YL+ SI Sbjct: 123 SIHLTNRIIDLTSEGFDLAIRT-GYLDDSKLVVTRIASRRLILCAAPEYLEKHGRIDSIA 181 Query: 185 ELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L+ HN + + D +WL P G R NS +++ + G G+ Sbjct: 182 DLENHNCLAGTSTHWRFKVDGSEVSWL-----PKGRWR-----CNSGVAVRDAALSGMGL 231 Query: 242 ALLPDYIVKD---NPNLVRIME 260 LP++ V D + LV ++E Sbjct: 232 CQLPEFYVADYLKSGKLVHVLE 253 >gi|315497152|ref|YP_004085956.1| transcriptional regulator, lysr family [Asticcacaulis excentricus CB 48] gi|315415164|gb|ADU11805.1| transcriptional regulator, LysR family [Asticcacaulis excentricus CB 48] Length = 297 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F VA SF+ A+E L L ++++S + LE +G +L YR R + LT G Sbjct: 5 DALRIFTRVAELSSFSQASETLGLPKATVSTAVQTLEAHLGTQLLYRTTRRVQLTHDGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + Q SV SG++R+ I + Q+L+ NL L +PD++++ Sbjct: 65 FYERAKDLLADADDLSGLFQTRSV--SGRIRVDMPIPVAQSLVIPNLPLLLERHPDLRVE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +DI + DC IR+ + + L R L + M +A+P YL P ++++ Sbjct: 123 LSSTDRIVDIVREGFDCVIRV-GTLSDTGLTVRALGKLSMGNFASPEYLARWGTPRTLED 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H LI + + + F++ + VN+ + + G GI P Sbjct: 182 LKGHRLIHYVTQMGARPDGFDYSDGTQWQTMAME-GVVTVNNSEAYRHAALAGLGIVQAP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ L+ I+ + + V YP+ +++ F +++ Sbjct: 241 RVGMTEHVAQGRLIEILPAYVADALPVSLIYPQRRHLARRVRVFIDWV 288 >gi|294013153|ref|YP_003546613.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676483|dbj|BAI98001.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 286 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 125/273 (45%), Gaps = 15/273 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W +R+F + RSG+F AA L +S ++ R++ LE +G LF R A GL LT++ Sbjct: 1 MEWSDVRIFLAIVRSGTFGGAARSLQISHPTVGRRLRALEQAIGHTLFQRTADGLVLTDE 60 Query: 63 GSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + ++ + L QE ++K G LRI++ G +L L +F YP Sbjct: 61 GHGIIPLAEQMEEGALAMERRLAGQEQTLK--GSLRISSADWFGAYVLPPILADFSKAYP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ ++++ + +++ AD A R+ P ++ ++QR+L + Y A + +P Sbjct: 119 NVDVEILTGTRLFNLAQREADVAFRI-VPFDTADVVQRRLFRLEYGVYIA----EEAADP 173 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + LIT D D WL P P L+ N+ + C G G Sbjct: 174 -EYGDGTGFRLITH-DTSTGHFPDIAWLIE-SFPNARP---VLRSNNRNVQGRMCREGVG 227 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273 IA+LP + P + R+ P+ ++ Y Sbjct: 228 IAVLPRVVGNQIPGIRRVDLPTTPPARDIWMGY 260 >gi|293390883|ref|ZP_06635217.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951417|gb|EFE01536.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 297 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 126/289 (43%), Gaps = 11/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++LR F A+ GSFT AA +L +S S++S I LE ++ IKLF R R + TE G + Sbjct: 6 NELRTFITAAQEGSFTKAAAKLDVSTSALSHSIRKLEEQLNIKLFNRTTRSIATTEAGEQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++ +E L GKLRI + +L L F YP+++++ Sbjct: 66 LFQNLLPLFESIEDNLNALSTFRNTLKGKLRINGNDHVFLFILWDKLMAFAEQYPEMELE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L D K +DI D IRL + + R + M P Y P +++ Sbjct: 126 LTSDTKFVDIVAGRFDAGIRLGSDVAQDMIAVRLSDKMQMAVVGTPEYFAKKATPKKVED 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240 L +H + +P W A P+ + P+ NS+L I + + G G Sbjct: 186 LGEHECLLVR--LPTSDSIMTWEFQPAKKSAPVVKFHPKGQLCFNNSHL-ISRAVLAGKG 242 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +A LP ++ D+ LV ++ +V + YP +N+ KA Sbjct: 243 LAWLPIDTMQPYLDSGELVEVLSNVAISYDGYHLYYPNRRQNSPLFKAL 291 >gi|152997501|ref|YP_001342336.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150838425|gb|ABR72401.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 298 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/298 (23%), Positives = 143/298 (47%), Gaps = 12/298 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V + SF A++ L +S+ ++R I+ +E E+G KL R+ R +++T G K + Sbjct: 7 MKVFCRVYEAESFKLASDSLGISRPMVTRYINSIEEELGTKLLQRNTRNISITHAGRKYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +E + E+ + + KP G L+I+ +D G + + L F LYP I++ + Sbjct: 67 QHCIAILDAIEEAENEIGDLTQKPKGLLKISVPMDFGLSHIVPLLDNFSRLYPQIELDVD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +K +D++ D AIR + + R L A+P Y+ E I++L Sbjct: 127 FSDKRVDMTESGVDIAIR-GGDLGGDQFVARPLCYSKGFVCASPDYILKYGELDHIEDLK 185 Query: 188 KHNLITFGD-LIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H+ + + + L+PK + D N ++ G N+ ++ ++ + G GI Sbjct: 186 NHSCLLYSNALVPKRWSLTDENGVSQTVSVSG-----AFTANNGGALTRFALAGLGIIYQ 240 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 PD+++ ++ LV ++ + + Y YP+ + K + +F+ + + KF Sbjct: 241 PDFLIAKYIESGELVNLLPNYKGYEISFYAIYPQRKLMSRKTRLLLDFLQEELANTKF 298 >gi|83718504|ref|YP_443118.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83652329|gb|ABC36392.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 555 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 9/295 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE +G++L R R TLT++G Sbjct: 259 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 318 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F YP + Sbjct: 319 ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVT 378 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 379 VQMQLTDAVVDLIAHDVDVAVRI-GMLADSSLIARELAPNYRVLCASPAYLAEHGAPERP 437 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ P+ W +P+ + L N + + G+GIAL Sbjct: 438 ADLLAHRCIVMGEQ-PR----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 492 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V + L R++ + + + ++ YP +++ F +++ ++ R Sbjct: 493 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELR 547 >gi|16330422|ref|NP_441150.1| transcriptional regulator [Synechocystis sp. PCC 6803] gi|1652912|dbj|BAA17830.1| transcriptional regulator [Synechocystis sp. PCC 6803] Length = 302 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 8/275 (2%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 SF+ AA + +Q +IS+QI+ LE +G++L R L LTE+G + ++ ++ + Sbjct: 18 SFSAAAREQQTTQPTISKQIAALEKYLGVRLITRSTTKLNLTEEGKQYYQYCQQILETVA 77 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + L E K G LR+ ++ G+ + L F+ YP ++I L++ + +D+ + Sbjct: 78 EAEASL-EGKEKAVGTLRLGCSVLFGEMQIVPRLSLFIARYPQVKIDLMMADYFVDMVQE 136 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D AIR+ Q +LI ++ A+ Y + EP + +EL +HN I + L Sbjct: 137 GLDLAIRIGNH-QDKALISERIGITRRVTVASTSYFEKSGEPKTPEELTRHNCIVYTSLS 195 Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNL 255 F+ V I Q NS +++ + GIA+ P ++ D+ NL Sbjct: 196 TINEWHFHGKNGV---IAINVKGSFQTNSSVAVRAAVLSDLGIAIAPIWMFGDDIYQGNL 252 Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++D F +Y Y + K+ F +F+ Sbjct: 253 KVVLQDYQPVPFPIYAVYRRSRFYPAKVHCFIDFL 287 >gi|330875082|gb|EGH09231.1| LysR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 305 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AA+ LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + + +P G LR+ + LG+ ++ L EF YP +++ Sbjct: 64 AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL ++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQVTCASREYLQQHGTPLQLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H +I + ++ P + ++C + VNS + C G G+ Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHGLACSISVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y + + LV ++ P + YP + + +++ F +++ Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWL 290 >gi|116252105|ref|YP_767943.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115256753|emb|CAK07843.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 301 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 17/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF +G F AAE+L L++S++ + I+ LE +G++LF+R R +LTE G + Sbjct: 6 DGVQVFVEAVETGGFAKAAERLSLTRSAVGKAIARLEERLGVRLFHRTTRTQSLTEDGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + L+ + GKLR++ + G+ L+ + + ++++ Sbjct: 66 YYERCVRAIEELRAGESLLESGRREVVGKLRVSLPVLFGRYCAAPILRAYARQHERLELE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ D D A+R ++L R+LV+ A+P YL EP S+ + Sbjct: 126 LSFSDRQIDLIADGFDLAVRNGVLGNGTALHARRLVSPRKALCASPAYLAARGEPHSLAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L +H+ + + D+ T P + L V S L I V G Sbjct: 186 LPEHDTLVY------WRNDYG--LTWQLPDATGALIDLSVTSRLRFDDLEVIADAAVDGM 237 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G+A LP +++ D LV + D + Y +P Sbjct: 238 GLAWLPYWLIHDRVQAGELVELWTDRPRAAMECYAVWP 275 >gi|78063778|ref|YP_373686.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971663|gb|ABB13042.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 352 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 131/289 (45%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF +A +G+FT ++L+L+ + +SR I+ LET +GI+L R R + LTE G + Sbjct: 7 MQVFVTLADAGTFTETGKRLNLTTAYVSRTIASLETHLGIRLLNRTTRSMCLTEAGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ ++ E + + + P G+LR + + + + F YPD+ + L Sbjct: 67 ARARDITLAVDASEREARGARLHPHGRLRAHCSASIANRFVIPLVAHFQARYPDVSVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D D A+ + SS + + I A+P Y P + + L Sbjct: 127 LAPQVPDLVRDSYDAAVIAMPSLPSSDQVAIDVGRIGSVLCASPAYAARHGMPDTPRALA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 +H + L+ W T+ R ++ + + S+ G+GI LL Sbjct: 187 RHRCL---QLVAPAYPAREW--TLTRGADSETVAFEPAMTADVAASLEIAVREGAGIGLL 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++ D + LVR++ D V+ YP K +A+ +F+ Sbjct: 242 PEFVADDGLRSGALVRVLPDYRAEDVGVFLVYPSRKLLDAKTRAWVDFM 290 >gi|332533076|ref|ZP_08408946.1| transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis ANT/505] gi|332037555|gb|EGI74008.1| transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis ANT/505] Length = 315 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSF AA + SS+S+QI LET +G++L R R +LT G + Sbjct: 5 NQLTLFVDVVQKGSFAKAAALHDMDNSSLSKQIKKLETSLGVQLLNRSTRSFSLTSAGEE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + L KP G LRI + + GQ +Q + F+ YP+++I Sbjct: 65 ILTQAHILIDTLSDIHSIADSYQAKPKGILRITSGMFFGQQYIQPAINIFMQKYPEVKIT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD+K DI D+ D A R+ K + S+L+ RK+ +H A+ ++K P + ++ Sbjct: 125 LMLDDKRNDIIADHYDLAFRIGK-LNDSNLMARKIANMHFALVASHDFIKKHGMPSTPED 183 Query: 186 LDKHNLITFGD 196 L I +G+ Sbjct: 184 LLALPAIIYGN 194 >gi|296115479|ref|ZP_06834112.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295977962|gb|EFG84707.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 316 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 11/287 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +S DWD R F V +GS + AA L L+Q ++ +I LE +G LF R GL T Sbjct: 4 LSPDWDGQRAFLAVLDTGSLSAAARSLGLTQPTVRHRIEALERAIGQPLFSRTVNGLVPT 63 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + +L + E S + +G +RI+ +G ++ L +P Sbjct: 64 DDARELAVHVRRMAFASEAFYRAASASGGEIAGTVRISVAEFVGIEVMPRLLAPLRERHP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L+L N++ D+ AD AIR+R+P + +L+ ++ I + +A YL+ P Sbjct: 124 GLAVELVLSNENADLPGQEADIAIRMRRP-RHGALVAKRAGCIPLGFFATASYLERHGVP 182 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS--IMQYCVLG 238 +L +H LI G + +DF + + +GE L+ +S+ + M LG Sbjct: 183 EGATDLARHTLI--GSDRSRMDQDFTR--ELQKTLGEKLYFALRTDSHPAQLAMVRAGLG 238 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G+ LP +LVR++ ++ + E L+++ ++ A Sbjct: 239 IGVTQLP----IGERDLVRVLPGLVVAELEAWVVAHEDLRHSRRIDA 281 >gi|264678206|ref|YP_003278113.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262208719|gb|ACY32817.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 313 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 18/301 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F V G F A L + +S +SR+++ LE +G++L R R L+LT+ G Sbjct: 3 DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R + + E +P G +R+ + L Q +L + EFL P +Q Sbjct: 63 ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ + N+ +++ + D A+R+R ++ S S++ ++L + A+P L+ P S Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238 +++L + + ++ + L V P G+ LQ V+ L++ + G Sbjct: 183 LEDLQLLDSMAM-----TAVDGHSSLLLVG-PEGKEHRLQLQPRYVVDDLLTLKFAALAG 236 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294 SG+ LPDY+ +D LV+++ P V+ +P G A R+F+ FL Sbjct: 237 SGMCWLPDYMCQDELTRGTLVQLLPQWAPPRGIVHAVFP---SRRGLAPAVRHFLDFLGE 293 Query: 295 R 295 R Sbjct: 294 R 294 >gi|104781998|ref|YP_608496.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110985|emb|CAK15705.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 300 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 26/298 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V +G F A QL + +S +SR+I+ LE +G +L R R L LT G Sbjct: 3 DLNDLFYFARVVETGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62 Query: 64 SK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + LH + + ++ SS +P G+LR++ + L L + FL YP + Sbjct: 63 ERYLHHCQAMLLEAEMADEVVASMSS-EPRGRLRVSCPVALAHAFLPDVISRFLAQYPLV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 Q+ ++L N+ +D+ + D A+R+R + +L+ R+L M AAP + + REP Sbjct: 122 QLDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPS 181 Query: 182 SIQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 + L + L+ F P ++ L EPR++ ++ ++ Sbjct: 182 ELATLPVLGAAEADRLVHFRLFGPNGRQEDVAL--------EPRLA---IDDFVVRNAAV 230 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G LP + + LVR++ D P + YP G L A R +I Sbjct: 231 RAGLGFTALPSMFCEQELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285 >gi|331008540|gb|EGH88596.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 305 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 134/292 (45%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAAGAVPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPLNLP 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H +I + ++A VD+ + + VNS + C G G+ Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMAGGVEVDQALA----CSISVNSADGYVAACEAGFGL 238 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V LV ++ P + YP + + +++ F +++ Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290 >gi|293396999|ref|ZP_06641273.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291420470|gb|EFE93725.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 311 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 16/296 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + G+F+ A + ++ SS+SR + LE+ + +L YR+ R + TE G Sbjct: 12 MRLFVAIVELGNFSEVARREGIAASSVSRVVQQLESALQTQLLYRNTRAVVPTEAGRLFA 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ Q ELQ+ +PSG +R+ + GQ + L E +P + I+L+ Sbjct: 72 RYARSMLDQMNEAQWELQQQEHEPSGLVRLNAPVVFGQRHIAPWLAELGERFPQLNIELM 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ID D D R+ + SS+L R T H A+P YL + +L Sbjct: 132 QTDEFIDPHRDATDLLFRIGV-LNSSTLHARVFATPQYHLAASPAYLAHAPALTQPADLY 190 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 +HN + + G P+ W +P L N+ +++ + G G+ + Sbjct: 191 QHNCLVYRGFTGPQ-----RWFFLDSDQRWQPHTFSGSLTSNNAETLVSAALNGMGMVVF 245 Query: 245 PDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLK 293 PD+++ D N LV ++ + + YP A + K++A +F K Sbjct: 246 PDWLIGDALKNGTLVPVLPQFAVSTTLEPQAIAAIYPNARRPPLKVRAVIDFFVEK 301 >gi|66046279|ref|YP_236120.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae B728a] gi|63256986|gb|AAY38082.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae B728a] Length = 303 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 13/306 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+FD + + +F V RSGSF AA L + +++SR++ LE ++ +L R R L LT Sbjct: 1 MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60 Query: 61 EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 + G + R S V +E + +L +P G +RIA D + FL Y Sbjct: 61 QAGEDFYGRCVSAVDGVMEAAE-QLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178 P +Q++ +L + D+ D D A R +Q S + R+L+ H A+P Y+ Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGSLQDSGYVGRQLIDEGHDTMVASPAYIAAHG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 P S+ L H ++ W L + + E I+ N+ ++ + + Sbjct: 179 LPDSLHSLHGHYCVSAAHRGGVTA----WRLLGPEAKMHEVHIASRFNANTAQALRKATL 234 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GIALLP +++ + LV ++ S ++ YP + AF + K Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294 Query: 294 ARDWKF 299 RD F Sbjct: 295 LRDKAF 300 >gi|322834744|ref|YP_004214771.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321169945|gb|ADW75644.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 300 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +++F V SFT AA+ L+L +S+++ I LE+ + I+L R R ++ T G Sbjct: 5 DSMQLFTRVVELRSFTQAAQALNLKRSTVTDAIKQLESRLNIRLLQRTTRHVSATLDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +E E+ + +P G LR+ + ++ L L +FL YPDI+ Sbjct: 65 YYQRCLRILADVEDA--EMAFAGAQPKGLLRVDVHGSMARHFLLPGLADFLAQYPDIEFY 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC IR + ++ S ++ R L T+ A+P YL+ P + + Sbjct: 123 MSEGDRLVDLVREGIDCVIRAGE-LKDSDMVARPLGTLPEITCASPDYLQRFGIPETPDD 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H +I F G L+P + + +R I P + L V+ S+ + G G Sbjct: 182 LAGHRMIGFRSSATGGLLPLIFQ----VQGKNREILLP--TSLSVSGAESMKEAARRGMG 235 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I +P Y +++D +LV+I+ D S V YP + + +++ F +++ Sbjct: 236 IIQVPHYGLLEDLAQGSLVQILADFPAGSLPVSLLYPRNRQLSPRVRVFIDWM 288 >gi|298487123|ref|ZP_07005173.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158366|gb|EFH99436.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 303 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF VAR SF AA +L +S + +S+++ LE +G+ L +R R +++TE G + Sbjct: 7 DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSITEDGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ E+ +PSG LR+ ++ G+ + L E LYP + I+ Sbjct: 67 VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + L R L + A+P YLK+ PLSI E Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H+ + +I + F + ++ P G + L N Q+C+ G G+ Sbjct: 186 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290 L + V+ + R+++ + P + ++ + L ++ K++ F+ Sbjct: 241 LRSLWDVRTDLAEGRLVQ--MLPEYRQDADIWAVHTSPLMSSAKVRVTVEFL 290 >gi|296389029|ref|ZP_06878504.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 301 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF VA +G F AA Q++LS +++S+ ++ LE + ++L R R ++LTE G Sbjct: 7 LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE L PSG LR++ + L L + FL YPD++++L+ Sbjct: 67 QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D A+R + S L+ R L+ + AAP YL +PL + L Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLGQHGQPLRPEALR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F W R I P +V+S L++ + G G++L+P Sbjct: 187 EHECIRFS----LSGHADRWTFRKGRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ LV ++ ++ YP + + GK + F +F+ Sbjct: 243 LYVQAELAEGRLVELLAGWKADETAIHAVYP-SRQLAGKTRVFLDFL 288 >gi|269964039|ref|ZP_06178345.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831258|gb|EEZ85411.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 299 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 153/313 (48%), Gaps = 29/313 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D++ VF V +GS + AAE L L+ S+ SR ++ LE+++ L R R + LT Sbjct: 1 MKATLDEMNVFVSVVDTGSISAAAELLSLTTSATSRALARLESKLNTTLLNRTTRRIELT 60 Query: 61 EQGS-KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 E+G L RV + + ++ + L KPSG LR+ +++ + ++ Y Sbjct: 61 EEGQLYLDRVRN-ILASVDEAEDMLVGDKGKPSGLLRVNAASPFMLHVVAPLVAQYQQEY 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P+I+++L + ++ID+ D AIR+ + ++ S++ +L T + A+P YL Sbjct: 120 PEIELELTSNEENIDLLGKRTDIAIRIGQ-LKDSTMRAARLATSSIRVLASPEYLAQHGN 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GE-PRIS-CLQVNSYLSIMQ 233 P S++EL++H L+ F F +L D P+ GE RI ++ S ++ Sbjct: 179 PKSVKELEQHRLLGFS--------RFEFLN--DWPLQTEAGELLRIKPVVKAESGETLRV 228 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAF 286 + G G+ L D++ +++ R++E D+ P VY+ A + ++++F Sbjct: 229 MALKGDGVVCLSDFMTQNDRRNGRLVEVLPESRLDIRQPIHAVYYANAVA---SARVRSF 285 Query: 287 RNFIFLKARDWKF 299 +F+ D F Sbjct: 286 IDFLKRHMNDEGF 298 >gi|254465490|ref|ZP_05078901.1| transcriptional regulator [Rhodobacterales bacterium Y4I] gi|206686398|gb|EDZ46880.1| transcriptional regulator [Rhodobacterales bacterium Y4I] Length = 294 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 120/251 (47%), Gaps = 17/251 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VAR+GS AA +L +S + + ++I+GLE + +L R R +LT G Sbjct: 7 MRTFVEVARAGSMNAAALKLKVSNALVGQRIAGLEDHLQARLLNRTTRQQSLTAFGQVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++ + + G+LRI + G L LK+F P+++I+L Sbjct: 67 EQCQDILELVSISEGKASDQQQHLQGRLRITAPVSFGSAALMPALKKFTQAAPEVEIELF 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +++ D+ + D A R+ + ++ SSL+Q KL M A+P YL + EP + +L+ Sbjct: 127 LSDRNEDLLAEGYDGAFRIGQ-LEDSSLMQIKLAPYKMVVCASPEYLADGFEPQTPSDLN 185 Query: 188 KHNLITFGDL------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + + F + E +W P+ + + VNS +++ G GI Sbjct: 186 RFRAVLFSKTGRKPWRFARGSEAIDW---------APK-AAVSVNSGQAVLSAAKAGMGI 235 Query: 242 ALLPDYIVKDN 252 A++P+ + + Sbjct: 236 AMVPEVLAHGD 246 >gi|15966203|ref|NP_386556.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307308554|ref|ZP_07588256.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307317332|ref|ZP_07596772.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|15075473|emb|CAC47029.1| Putative transcription regulator [Sinorhizobium meliloti 1021] gi|306896921|gb|EFN27667.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306900954|gb|EFN31563.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 299 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 139/286 (48%), Gaps = 11/286 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + VF VA +G F+ AA +L+LS+S++ + +S LE +G++LF+R R +LTE+G Sbjct: 4 FNGISVFVEVADAGGFSAAAARLNLSRSAVGKTVSRLERRLGVRLFHRTTRTQSLTEEGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ T + L+ + G+LRI+ + G+ + L++ L +P ++ Sbjct: 64 LFYESCQKALGEIRTAEDLLESGRREIRGRLRISMPVLFGRQCVAPLLRDLLRSHPRLEF 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L +++ ID+ + D AIR S L+ R + M A+P YL+ P ++ Sbjct: 124 DLSFNDRVIDLLDEGFDLAIRNSPLGNGSGLMMRTVAEQRMTVCASPAYLEAHGMPRTVA 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGI 241 EL H I + + E +W D E P+ L+++ +I G G+ Sbjct: 184 ELAAHEGIVYA----RGGEPLSWSFPSDGKAAEIVLPQTR-LRLDDLAAIADAAAAGHGL 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 A LP ++V++ LVR++ D F + +P KL+ Sbjct: 239 AWLPCWLVRERVQKGELVRVLTDRPGLIFKAHAVWPRTQHMLPKLR 284 >gi|330991203|ref|ZP_08315155.1| putative HTH-type transcriptional regulator ltrA [Gluconacetobacter sp. SXCC-1] gi|329761696|gb|EGG78188.1| putative HTH-type transcriptional regulator ltrA [Gluconacetobacter sp. SXCC-1] Length = 298 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 4/245 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA +GSF+ + + SQ +ISR I+ LE G LF R R L +TE G L Sbjct: 7 LHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMTEDGRSLL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV LET + L SG +R+ T G L L L +PD+ ++L+ Sbjct: 67 PHAYEVLEILETAETALGRRRASVSGLVRLGVTTAFGLYLTS-RLGSLLEEHPDLSVELV 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ + D A+R+ I SLI R+L ++H A+ YL P ++L Sbjct: 126 MRDGFGDLVEEGLDLAVRI-GSIAEGSLIARRLGSVHRCVIASTDYLARRGTPEHPRDLL 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I + D+ + + + NS +++Q G GI +LP + Sbjct: 185 NHPCIAYS--YGGTRHDWQFTRKGEGETAVAASGPFRANSSEAVLQAVRAGLGIGMLPAF 242 Query: 248 IVKDN 252 V+D+ Sbjct: 243 QVEDD 247 >gi|319791169|ref|YP_004152809.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593632|gb|ADU34698.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 308 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 13/279 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA GS T AA+ ++ + + R++ LE +G+KL R R +TLT +GS Sbjct: 6 QLESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEERLGVKLLVRTTRRITLTHEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + + VK SG LR+ G+ + + F L+P++ I L Sbjct: 66 LEDCQRLLTEFQNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPLVPRFHALHPEVTISL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D++ + DCA+R+ + SSL+ +L A P +L+ P EL Sbjct: 126 NLSDRVVDVTGESFDCAVRVGD-LPDSSLVSVRLADNRRRCVATPDFLRRHGTPKHPGEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240 + +T L + W V G + L+ + L + +C+ G G Sbjct: 185 SRFACLT---LSSDASQTRGWAFRVTTEAGVEELIHLRPSGPLDCSDGQVLHDWCLAGHG 241 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276 IA + V+ D LV ++++ P +Y + A Sbjct: 242 IAWRSTWEVEAEIDAGLLVPVLDEFAAPPNGIYAVFAGA 280 >gi|254876712|ref|ZP_05249422.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842733|gb|EET21147.1| transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 295 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 103/192 (53%), Gaps = 2/192 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQ 62 ++D + +F + G+FT A+ L++SQS++SR+I LE V +KL R++RGL +TE Sbjct: 3 NFDDIFIFIKLIDIGTFTELAKHLNVSQSTVSRRIQNLEESVNMKLIKRNSRGLIEMTED 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + TT ++ S + SG L++ N+L L F YP++ Sbjct: 63 GESFYMSFKDIEKQANTTLQQIVNKSKEISGTLKVGIPKLFLDNILADKLGIFYARYPNV 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ +D+ D D AI ++KPI SS I + LV YA+ Y++ +P Sbjct: 123 KLVFSYTAGIVDLVKDDIDIAITIKKPITSSCTI-KTLVRAKNKLYASQDYIQTYGQPSL 181 Query: 183 IQELDKHNLITF 194 +++L+ H+++ F Sbjct: 182 LEDLESHDIVGF 193 >gi|160899223|ref|YP_001564805.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364807|gb|ABX36420.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 310 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 13/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A SGS + A L L+ ++ S + LE E+G+ LF R R L LT++G Sbjct: 9 LDIFVRTADSGSLSATARALDLTPAAASAALKRLEAELGVTLFVRSTRSLRLTQEGELFL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L + +L G L++A DLG+N+L L EF + + ++L Sbjct: 69 EHCRPALAGLRQVRDQLAGGQAALRGTLQLAAPSDLGRNVLMPWLDEFQSQHAGVDLRLH 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186 L ++ ++ + D A R +P Q SSL+ L H AAP YL+ P + +L Sbjct: 129 LSDRAANVYSEPVDAAFRYGRP-QDSSLVALPLSDTHRRVLCAAPSYLQERGAPATPHDL 187 Query: 187 DKHNLITFGDLIPKCMED--FNWLATVDRPIGEP---RISCLQV-NSYLSIMQYCVLGSG 240 H+ + F ++ + + D W A + EP R+ V N ++ ++ V G G Sbjct: 188 AGHDCLCF--MLGEEVHDRWSFWPAGQGAAVPEPVHVRVRGRNVANDGDAVRRWAVAGRG 245 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IA + V ++ L+ + D T ++ P + T ++A R+F+ ++ Sbjct: 246 IAYKSYFDVAEDLARGRLLALCTDWTTECVPLFLVAPSRRQFTPLVRALRDFVAVR 301 >gi|145636072|ref|ZP_01791742.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae PittHH] gi|145270594|gb|EDK10527.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae PittHH] Length = 305 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 134/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GI L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIVNL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVIYPNRRHLPIKVRAFIEFL 288 >gi|170694624|ref|ZP_02885776.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170140506|gb|EDT08682.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 298 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 19/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++RVF VA SFT A++ L + +++++ + +E +G +L R R + LT G Sbjct: 4 FEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTPDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + S++ P G LR+ L ++ + +L FL YPDI++ Sbjct: 64 AYYGRCVRLIADLEDAEGSF--SNLAPKGLLRVNLQGTLARHFVVPSLPAFLTRYPDIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SS++ R++ + A+P YL+ EP Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLEKYGEPADPS 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLG 238 L H + + G +P +F+ + + P+ P +S V Y + G Sbjct: 181 ALAAHRAVNYVSSATGKPVPL---EFS-IEGRNTPMLLPGAVSVTGVELYTG---SALAG 233 Query: 239 SGIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P Y V+D R I+ PS V YP+ + + +++ F ++ Sbjct: 234 LGIVQVPRYRVRDELAAGRLKIILAGFPPPSLPVSVLYPQNRQLSSRVRVFAQWL 288 >gi|167923505|ref|ZP_02510596.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei BCC215] Length = 306 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++ +S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF+ +P ++++ Sbjct: 65 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P + + + Q G Sbjct: 185 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 241 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 G+ALLP+++V+D+ +++ + F VY YP A K++A+ +FI Sbjct: 242 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 296 >gi|241664539|ref|YP_002982899.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240866566|gb|ACS64227.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 306 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 12/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V GS + AAE + +S+ IS+ ++ LE + +L R R L+LTE G+ Sbjct: 9 IFVQVVERGSLSAAAEAMGMSRGVISKALARLEARLQTRLLQRTTRRLSLTEAGAAFFEK 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + E ++ + + + G LR++ LL L F YP +QI L ++ Sbjct: 69 SREGLALVDAAEQAVSALRDEARGTLRVSAPASYAVTLLAPLLGAFQARYPAVQIDLDMN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ D AIR+ ++ SSL+ R+L Y AP Y + P S ++L H Sbjct: 129 DRYADLVAGRIDVAIRI-GMLEDSSLVARRLANCAHAIYGAPSYFRERGIPQSPEDLRNH 187 Query: 190 NLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 N + + + +W+ A R I S L NS L + + G G++L P Sbjct: 188 NCLVYANYDGP----HDWVLTDAAGHRHIAHVAGSMLANNS-LVLREAARSGLGVSLGPA 242 Query: 247 YIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+D+ R ++ D ++ + + + K++AF +F+ Sbjct: 243 YLVRDDVAAGRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFL 289 >gi|332285571|ref|YP_004417482.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330429524|gb|AEC20858.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 296 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/300 (23%), Positives = 145/300 (48%), Gaps = 29/300 (9%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ L +F +AR+ S A +L ++ +++S+++ LE + ++L R R L +T +G Sbjct: 4 YNDLELFASIARTNSLVGAGRELGITGAAVSKRLMALEQRLAVRLVQRTTRTLRITPEGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + +L+ + L+ + KP+G LRI ++ G+ ++ L EF LYP++++ Sbjct: 64 RYLQEGKRLLAELQELEQTLRGVTAKPTGLLRINASLGFGRAIVSTILAEFAALYPELEV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL L ++ +++ + D IR+ ++ + L RKL + AAP YL P ++ Sbjct: 124 QLHLSDRALNLVEEGYDIGIRV-GELRDARLHARKLRSNRRLICAAPGYLDKHGTPANLA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYLSI------M 232 +L KH++I L D+ G E R L+V + +S + Sbjct: 183 DLAKHSVIV--------------LHENDQRFGTWHLQNEARYENLKVRARMSTNDGEAAL 228 Query: 233 QYCVLGSGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G G+ L ++ ++ +R++ + VY YP + + K +AF +F+ Sbjct: 229 SWALAGFGLLLRSEWSIQALLQEEKLRVVLPDWYETADVYAVYPTQDQLSAKTRAFIDFM 288 >gi|325915661|ref|ZP_08177966.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria ATCC 35937] gi|325538078|gb|EGD09769.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria ATCC 35937] Length = 290 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 20/296 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +++ LR F VA +G + AA +L +++S +SR++ LE +GI+L R RG +TE Sbjct: 1 MEFEDLRTFVEVADAGGVSPAARRLGVAKSIVSRRLIRLEDALGIQLLARTTRGAAVTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G+ + + ++++ ++ P+ G+LRIA + G L L E Sbjct: 61 GATFREHAARM-----CAEMDVARETILPAGDLRGRLRIAAPLTFGPTHLAPVLAELASR 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P +Q+ ++ +DI D DCAIRL + S+L+ R++ + A P YL+ Sbjct: 116 HPALQVHACYSDRFVDIVADGFDCAIRLGY-LTDSNLVARRIAPMRGSLMATPAYLRKHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 EP + Q L H + G + M D + L T+ PR + ++ +I + G Sbjct: 175 EPDTPQALLTHEALLQGTESWRFM-DGDKLVTI-----HPR-GRFKADNGTAIAAAALAG 227 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 GIA LPD++V + + LVR+M +P +Y A K++ + + Sbjct: 228 LGIAALPDFLVAEHLASGALVRVMTKYPSPEAGLYVVRAPATHPARKMRVLTDLLI 283 >gi|260466991|ref|ZP_05813172.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259029191|gb|EEW30486.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 305 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 23/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F V +GSFT A ++L ++++ +S QI LE E+G L R R +T TE+G Sbjct: 8 NRLVYFTTVMETGSFTVAGDRLGVAKAVVSHQIGKLEEELGATLMRRTTRRITPTEEGRL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + E E+ +V+P+G LR+ +D G ++ + +L YP ++++ Sbjct: 68 FYDRATIILREAEAAYGEISHGAVEPAGMLRLTAPLDYGAKVVAPVMAAYLKTYPQMRVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 I D+ ++ + D IR+ + SS R+L TI A+P + + P + Sbjct: 128 AIFDDAVSNLVDEQIDLGIRVGW-LADSSNQARRLGTIRQIVVASPAFAASL--PSDVGP 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVL- 237 +L G+ + + WL + D GE P I C + + L+ CVL Sbjct: 185 HQARSLAWVGNAQLRGIG--QWLFSRD---GETVLTELNPVIMCDKSPAALA----CVLA 235 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ + PDY V D+ LV + D P+ ++ +P A K++AF + + Sbjct: 236 GIGLGIFPDYSVDDDIAEGRLVPVFADWTLPTGGIHAVFPPARFRPAKVRAFVDLL 291 >gi|146308120|ref|YP_001188585.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576321|gb|ABP85853.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 309 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 14/288 (4%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +VF V + GS T AAE L +S++ +SR ++ LE G++L +R R L+LT G ++ Sbjct: 8 QVFVEVVQRGSQTAAAEALEMSRAMVSRYLAELEHWAGVRLLHRSTRKLSLTAAGEQMLP 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 E+ E Q Q P G LRI + Q L L+EF YP + I L++ Sbjct: 68 QCREMLALAENMQALGQGLDDAPRGTLRITCSQSFAQAWLVHALQEFTERYPQVSIDLLV 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +++ D A+R+ + +LI R+L A+P YL P QEL + Sbjct: 128 GSEALNLVEARIDLALRITNQL-DPNLIARRLGVCRSVVCASPAYLARHGTPQHPQELAR 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP 245 HN +++ + + +F +R +S L N + +++ + G+GI+L P Sbjct: 187 HNCLSYA-YFGRSLWEF------ERQGEASAVSVAGSLSANESMVLLEAALAGAGISLQP 239 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V LV+++ D ++ Y + ++ +FI Sbjct: 240 LYSVAGLLREGRLVQLLADYRPAELGIHALYGTRRQMLPAMRLLLDFI 287 >gi|24374979|ref|NP_719022.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24349705|gb|AAN56466.1|AE015783_9 transcriptional regulator, LysR family [Shewanella oneidensis MR-1] Length = 307 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 129/282 (45%), Gaps = 18/282 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +VF + GS AAE L +S+S ++R +S +E G +L +R R L+LT G + Sbjct: 5 EAAKVFVTIVERGSMIGAAEVLDMSRSMVTRYLSEMEEWSGARLLHRSTRRLSLTSAGEQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + S +P G LRI+ + + +L ++ +L YP + Sbjct: 65 VLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLILPTVVRPYLAQYPQASVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D AIR+ + SLI R+L AAP YL + + ++ Sbjct: 125 FHVSSQTVDLVAERIDMAIRITNEL-DPSLIARRLGECESVVCAAPRYLASHSPIIQPED 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGE--------PRISCLQVNSYLSIMQY 234 L +HN +T FGD++ + N L T P G+ P L N + ++ Sbjct: 184 LTRHNCLTYSYFGDVMWR-FTQINHLVT--HPDGKSAGQQFNIPVKGNLSANDSMVVLNA 240 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 + G GIA+ P + VK ++ LV ++ D S VY Y Sbjct: 241 TLAGEGIAMQPVWAVKSYLNSGELVPLLRDFKPQSLGVYGVY 282 >gi|325121849|gb|ADY81372.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 311 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ F V S SF+ A QL + S++SR ++ LE +G +L YR R L L+E G + Sbjct: 11 NEMATFVKVVESESFSETARQLGTTPSAVSRAVARLERALGTRLLYRTTRKLRLSESGQQ 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ ++ + + + V+P G +R++ +G ++ +L EFL YP I IQ Sbjct: 71 VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++ +D+ D D A+R+ + L+ RKL+ I A P YL P + Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPHD 189 Query: 186 LDKHNLITFGD 196 L +H I G+ Sbjct: 190 LKQHECIYLGE 200 >gi|254559003|ref|YP_003066098.1| LysR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266281|emb|CAX22042.1| putative transcriptional regulator, LysR family [Methylobacterium extorquens DM4] Length = 298 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 17/275 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SFT AA +L +SQS++S+ + LE + ++L R R ++ TE G +L Sbjct: 9 LAAFLTVARERSFTRAAAKLGISQSALSQTVRNLEERLKVRLLTRTTRSVSPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R +ET L E+ +P+G RI + +L + + + +PDI ++++ Sbjct: 69 RTVGPHLDAVETELAALGETLDQPAGNFRITAIEHAAETILLPGIAKVVGEHPDIHVEVV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D DI D +R + I + R + M AP Y+ P QEL Sbjct: 129 VDYGLTDIVSHRFDAGVRAGEDIAKDMIAVRVGPDMRMVVVGAPSYIAMRGTPRIPQELV 188 Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H+ I T G L + W D RP+ L N+ I+ +G G+ Sbjct: 189 GHSCISLRLQTSGGL-------YAWEFEKDGRPVNVRVEGGLVFNTPRLILNAARMGLGL 241 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 A +P ++ LV+I++D PSF Y Y Sbjct: 242 AFVPSDQAGPLIESGELVQILDD-WCPSFPGYHLY 275 >gi|226199649|ref|ZP_03795202.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|225928235|gb|EEH24269.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] Length = 360 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 64 DLPALATFARIVVAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 123 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 124 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 183 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 184 VQMQLTDAVVDLIAHDVDVAVRI-GMLADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 242 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W P + N + + G+GIAL Sbjct: 243 ADLCAHRCIVLGE-----QPRVEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 297 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 298 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 355 Query: 298 KF 299 ++ Sbjct: 356 RW 357 >gi|119094203|gb|ABL61025.1| transcriptional regulator [uncultured marine bacterium HF10_25F10] Length = 300 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 12/251 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++ D L F VA G + AA +L +S+ISR I+ LE ++G++LF R R L LT Sbjct: 1 MKWNVDHLPAFVAVAEIGGISVAARRLGKPKSTISRAIARLEEDIGLQLFVRGPRSLRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 GS+ ++ + ++E EL S P G L +A + + ++ +L F YP Sbjct: 61 HDGSQFYQHAVRILEQVEAASAELAGLSETPRGTLSVALPMAFAREIVGPHLARFQAEYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI++ L + + D+ D D A+ + + S LIQ++L+ + A+P E Sbjct: 121 DIRLDLRIGSGQPDLIRDAIDMAV-IVGSVTDSDLIQQRLINTPLIWIASPEVAATLPES 179 Query: 181 LSIQELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 + EL +LI+ +G+ P + D N + GE +QVN + + ++ Sbjct: 180 PGLDEL--ASLISAVETRYGE-TPVTVVDKNGAIRDIKLQGE---QVMQVNDPILLREFV 233 Query: 236 VLGSGIALLPD 246 G++ PD Sbjct: 234 CTSGGLSFAPD 244 >gi|150395824|ref|YP_001326291.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027339|gb|ABR59456.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 310 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 17/259 (6%) Query: 1 MSFDWDKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M D LR RS GS AA +L ++ ++ S+ I+ LE +GI+L R R Sbjct: 1 MELLMDSLRGIESFVRSVEEGSIAAAARRLGITPAAASQNIARLERALGIRLLVRTTRQS 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LTE G + EV +LE + + +P G+L+IA+++ G++++ + F Sbjct: 61 GLTEAGRLYYDRVREVISELEQAAAAVSVLNEEPRGRLKIASSVAFGRHVIAPLVPSFAA 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPD+ I+L++ ++ ID + D ++R + ++ LI RKL ++ + AAP Y+ Sbjct: 121 RYPDVSIELVVTDRSIDHIGEGIDISVRFAQQLE-PGLITRKLGSVPLVICAAPSYIARR 179 Query: 178 REPLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSI 231 P + ++L H+ + + G L F W D EP + V N ++ Sbjct: 180 GRPETPEDLRHHDCLIYRFAGHGRL-------FRWAFVRDGLRFEPELRPTIVSNDIDTL 232 Query: 232 MQYCVLGSGIALLPDYIVK 250 Q + G+GI L +I Sbjct: 233 AQMAIAGAGITRLGTFIAN 251 >gi|71281636|ref|YP_270096.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71147376|gb|AAZ27849.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 305 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 140/281 (49%), Gaps = 11/281 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD +++F VAR+ + AA++L + S++SR++ LE + KLF R G LT Sbjct: 1 MNWDDIKIFLEVARAERLSTAAKRLTMDASTVSRRLHKLEESIATKLFDRTQDGHVLTPD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L ++ + + ++ + G +RI T LG + NL +P I Sbjct: 61 GEMLLTSACKMEQDAQHALSSIHNNNEENCGLVRIGVTEALGNFFVSPNLLTLQQQHPSI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL----VTIHMHAYAAPHYLKNCR 178 + L+L ++ + IS + AD AI + +P +S+S+I KL + +++H H LK Sbjct: 121 DVHLLLFSRYVKISRNEADIAIAVERP-KSTSMIVSKLCDYKLQLYVHQDYLDHNLKQYP 179 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237 + +++ L +H +T+ D + + +++ +DR + + S +S QY + Sbjct: 180 QGITLDNLAEHKWVTYVDNLI-FTDQLSYIKELDRYLSGELKANFSSTSIIS--QYFAIK 236 Query: 238 -GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPEA 276 G GI +LP ++ + +L+++ IT S + + +PE+ Sbjct: 237 SGLGIGILPCFLADQDKSLIKLHSQDITISRSFWLVTHPES 277 >gi|126172880|ref|YP_001049029.1| LysR family transcriptional regulator [Shewanella baltica OS155] gi|304410720|ref|ZP_07392338.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|307304815|ref|ZP_07584565.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|125996085|gb|ABN60160.1| transcriptional regulator, LysR family [Shewanella baltica OS155] gi|304351204|gb|EFM15604.1| transcriptional regulator, LysR family [Shewanella baltica OS183] gi|306912217|gb|EFN42641.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 296 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 7/277 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L F VAR GSFT AA L ++QS++S+ ISGLET + I+L R R ++ T Sbjct: 2 MKRNLNDLLCFVTVAREGSFTRAAALLGVTQSALSQAISGLETRLEIRLLTRTTRSVSAT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + ++E+ L KP+G +RI + + LL L L YP Sbjct: 62 EAGERLLNAIGNRFDEIESELDALTAMRDKPAGTVRITCGDFVLRTLLIPKLSPLLHNYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++ ++ DI D D IRL I + M A A P Y P Sbjct: 122 DIKVEFDVNYGFRDIVADRFDAGIRLGDTIDKDMIAIPIGPHQTMAAVATPAYFAQHPIP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGS 239 Q+L +HN I P + W D + + L N+ I+ + + Sbjct: 182 KHPQDLIEHNCINI--RFPTHGGLYVWEFEKDGKQLNVHVDGQLIFNASHHIVDAALQSN 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 GIA LP+ + + LV+++ED + SF Y+ Y Sbjct: 240 GIAYLPEAEFEPHIKAGRLVKVLED-WSLSFAGYYLY 275 >gi|298717287|ref|YP_003729929.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361477|gb|ADI78258.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea vagans C9-1] Length = 292 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 1/190 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR++ V +G+FT AAEQL LS+ +SR+++ LE +G++L R+ R L++T+ G Sbjct: 4 EDLRIYIAVIHAGNFTAAAEQLMLSKQYVSRRMAALEASLGVRLLIRNTRKLSVTDAGLL 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +++ ++ + E G RI + G + L + EFL +P +Q Q Sbjct: 64 FAQHAQRILDEIQEAELAVSEQQQTLRGTFRINLPMSFGMSHLSPLIAEFLSHHPALQFQ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +D+ + D AIR+ + S+LI R L + +P YLK P E Sbjct: 124 IELADRYVDVIGEGVDMAIRI-GTLADSTLIARPLGELKRVICCSPDYLKRAGTPQHPDE 182 Query: 186 LDKHNLITFG 195 L +H + +G Sbjct: 183 LLQHACLRYG 192 >gi|270262473|ref|ZP_06190744.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043157|gb|EFA16250.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 310 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 13/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA GS + AA L L+Q ++S+QI+GLE ++G +L +R R ++LT+ G + Sbjct: 7 MKTFVRVAELGSLSAAARDLGLTQPAVSQQIAGLEQQLGTQLLFRSTRAVSLTDAGGGYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + L + + G LRI GQ L F +P++ I+L+ Sbjct: 67 RQIKPILAAVDEAEEALHGLNRRLQGNLRIHAPTGFGQQHLTPLAIAFQQRHPELNIELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ D+ + D AIR + + + + R+L + A+P YL P + L Sbjct: 127 LDDRRADVIGEGIDVAIRFGE-LSAPGTVARRLGELQRILVASPAYLAAHGMPQTPAALT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244 H I + L D + L T+ P G ++ + N+ S++ G GI Sbjct: 186 AHAHIRYSGL-----SDGDTL-TLIGPQGAEMVNVRPVFRANNTFSLLAAIESGLGIGGA 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++ LV+++ P ++ YP A GK++A+ +++ Sbjct: 240 QRPLIGRQLAAGTLVQVLPAWHYPPMALHAVYPAARFIPGKVRAWVDYLL 289 >gi|241668177|ref|ZP_04755755.1| transcriptional regulator, LysR family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 294 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 103/192 (53%), Gaps = 2/192 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQ 62 ++D + +F + G+FT A+ L++SQS++SR+I LE V +KL R++RGL +TE Sbjct: 2 NFDDIFIFIKLIDIGTFTELAKHLNVSQSTVSRRIQNLEESVNMKLIKRNSRGLIEMTED 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + TT ++ S + SG L++ N+L L F YP++ Sbjct: 62 GESFYMSFKDIEKQANTTLQQIVNKSKEISGTLKVGIPKLFLDNILADKLGIFYARYPNV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ +D+ D D AI ++KPI SS I + LV YA+ Y++ +P Sbjct: 122 KLVFSYTAGIVDLVKDDIDIAITIKKPITSSCTI-KTLVRAKNKLYASQDYIQTYGQPSL 180 Query: 183 IQELDKHNLITF 194 +++L+ H+++ F Sbjct: 181 LEDLESHDIVGF 192 >gi|170696157|ref|ZP_02887292.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170138972|gb|EDT07165.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 335 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 14/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +R+F VA + SF+ AE ++ + ++R++ LE + +LF R R + LT+ G+ Sbjct: 4 LETIRIFVKVADTSSFSRTAEHFAVTTAVVTRRVVALEKRLDARLFRRTTRHVALTDAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ ++ + + G LRIA+ + G L LK F YP + Sbjct: 64 TFLESARRILDDIDEAEMAVAGQERRACGVLRIASPVAFGLRHLSPILKSFRDAYPLVMP 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + L + I++ D I +SL+ R+ + M A+P YL+ P ++ Sbjct: 124 HVALCDDTINLVERRVDVVIVPEVEASGNSLVTRRFASSPMQLVASPMYLQRHGVPGTVA 183 Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240 L+ H ++ G +C+ L G+ R S + NS + + V G G Sbjct: 184 ALNDHVVLQHSGKQFAECLRRLERL-------GDGRCHPDSLIMSNSLAMLHKMSVDGHG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA+LP Y+ + D+ LV ++ + P + + +++AF +FI Sbjct: 237 IAVLPAYLAEPDIDSGLLVNVLPGIDMPRLDLSVAFETRHNMPARIRAFIDFI 289 >gi|148547085|ref|YP_001267187.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148511143|gb|ABQ78003.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 300 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 12/266 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +GSF+ A L L Q ++SR ++ LE + +L +R R L+LT +G + + Sbjct: 10 FVRTVETGSFSSAGRDLGLGQPNVSRYVAALEDHLKTRLLHRSTRKLSLTSEGERYYADA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + ++ L+ + V PSG LR+A L + + FL LYP++ + L +++ Sbjct: 70 RRILDAVAESESALK-NDVPPSGLLRVACPTALAHTFIVPEIPRFLSLYPEMTLDLQIND 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +++ + AD A+R+ +L ++L + A+ YL P + ++L+ H+ Sbjct: 129 RFVNLVDEGADLALRIGH-FDDKTLRTKQLGSFKRVCVASSDYLAKRGTPSTPEDLENHD 187 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 I + L F VD P+ L+VNS + + G GIA P+++ + Sbjct: 188 CIIYTLLSTGATWRFR---NVDIPV----TGKLRVNSPEATRELVNAGVGIAQGPEWLYE 240 Query: 251 ---DNPNLVRIMEDVITPSFTVYFCY 273 N NL I+++ P + F Y Sbjct: 241 AGLSNGNLKLILQEFYPPPVPIQFVY 266 >gi|167035657|ref|YP_001670888.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166862145|gb|ABZ00553.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 316 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD L+ F VAR+ + AA++L + +++SR+IS LE +G LF + G LT Sbjct: 10 ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + L ++ S V SG +R+ T G + L F+ YP Sbjct: 70 AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + ++ I +S AD I L +P + + KL + YA YL N Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQDYLDNHAPI 188 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L KH I++ D + E +LA + S + Y + +Q G G Sbjct: 189 RQVADLAKHPFISYVDDLAFSSE-LLYLANLIPSASAHLRSTSVIAQYTAALQ----GRG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ +P LV ++ + I + + E L+ ++ ++I Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293 >gi|217974764|ref|YP_002359515.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217499899|gb|ACK48092.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 296 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 7/277 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L F VAR GSFT AA L ++QS++S+ ISGLET + I+L R R ++ T Sbjct: 2 MKRNLNDLLCFVTVAREGSFTRAAALLGVTQSALSQAISGLETRLEIRLLTRTTRSVSAT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G +L + ++E+ L KP+G +RI + + LL L L YP Sbjct: 62 EAGERLLNAIGNRFDEIESELDALTAMRDKPAGTVRITCGDFVLRTLLIPKLSPLLHNYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++ ++ DI D D IRL I + M A A P Y P Sbjct: 122 DIKVEFDVNYGFRDIVADRFDAGIRLGDTIDKDMIAIPIGPHQTMAAVATPAYFAQHPIP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGS 239 Q+L +HN I P + W D + + L N+ I+ + + Sbjct: 182 KHPQDLIEHNCINI--RFPTHGGLYVWEFEKDGKQLNVHVDGQLIFNASHHIVDAALQSN 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 GIA LP+ + + LV+++ED + SF Y+ Y Sbjct: 240 GIAYLPEAEFEPHIKTGRLVKVLED-WSLSFAGYYLY 275 >gi|110635169|ref|YP_675377.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286153|gb|ABG64212.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1] Length = 306 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 10/291 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF V G + A L +S + S +I LE +G++L R R LT TE G Sbjct: 5 DNLAVFVRVVELGGLSAAGRDLRISPAVASNRIKELEKHLGVRLLNRTTRQLTATEHGRV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V L+ + + S +P G +R+ + LG+ L+ + EF YP I+++ Sbjct: 65 FYDGAKRVLEALDEAEGAVAALSGQPRGTIRVTAPLGLGKRLIASGIPEFRERYPQIEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++D+DI + D A +L +++SSL R ++ A+P YL+ EP ++ Sbjct: 125 LRLSDRDVDIMREGIDVAFKL-GLLENSSLRMRGIMDCERVLAASPVYLERRGEPERPEQ 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L ++H+ + P E F LAT + P + I + + G GI Sbjct: 184 LVEEQHDCLML--RFPGVREYFWTLATPEGPKKFEVRGPFDTDDGDVITGWALAGHGIIN 241 Query: 244 LPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + ++D L I+ + T+ YP K++ +F+ Sbjct: 242 KPRFEIEPFIRDG-RLKIILAKTPPTTVTLAAVYPHKKLQDPKVRLLVDFM 291 >gi|209518362|ref|ZP_03267186.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501181|gb|EEA01213.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 295 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR + AR+GSF+ AA +L++ S ++++I+ LE +G LF R R +T T G+ Sbjct: 7 LRAYVATARNGSFSAAARELNVVPSVVTKRINELEATIGASLFERTTRAVTPTSLGASRV 66 Query: 68 RVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +++ KL+ + S +P G LR+ L L+ F ++P + + Sbjct: 67 EQATQLLRKLDEL---ISGPSARPEDVEGHLRVKVPTALATTRLRPAFARFQSMFPKVNL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ I D D AI + + +++ L IH+ A+P Y+ P + Sbjct: 124 EIALLDRQISPVEDGYDLAIGVVL-LHPGGVVEEVLCPIHLLVCASPDYIARNGVPAHPR 182 Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL ++ +TF P E F R PR + N + ++ + G+G+ L Sbjct: 183 ELPDYDCMTF---FPAHAEWRFEKNGASVRVALRPRFTS---NDWFLLLTAALQGNGLTL 236 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPDY+ D LV ++ D P + PE L++ N + Sbjct: 237 LPDYVAGDALKTGKLVHVLPDWTVPPGEIRAVIPEYRAADVALRSLLNIL 286 >gi|163857149|ref|YP_001631447.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163260877|emb|CAP43179.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 302 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 11/289 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++ RVF VA GSF AA L + ++S+S + LE +VG +L +R R + +T G Sbjct: 4 FEQYRVFAQVAEMGSFIKAANALGMPRASVSAAVQQLEAQVGARLLHRTTRQVRVTSDGM 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++E Q + SG+L I + + L+ L L +P +QI Sbjct: 64 QLLDRVRLLLAEVEDIDQLFQAGQRQVSGRLNIDAPSRIARRLIAPMLPGLLRRHPRLQI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ + DC +R+ + SSL+ R L + M A+P YL+ EP Sbjct: 124 SLGCTDRAIDLIREGVDCVVRV-GTLHDSSLVARPLGHVSMANCASPAYLREFGEPRQPG 182 Query: 185 ELDK-HNLITF--GDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240 +L H ++ + L + ++ R I P R+ V +Y++ C+ G G Sbjct: 183 DLSSGHWVVGYAPAGLGRQAAWEYQQRDGNVRVIELPSRVLVDNVENYIAC---CLAGLG 239 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + +P + V+ LV +M D P V YP + +L AF Sbjct: 240 LIQIPRFDVQHLLAAGALVEVMPDSPAPPMPVTLLYPHRRPRSRRLIAF 288 >gi|110643304|ref|YP_671034.1| transcriptional activator TtdR [Escherichia coli 536] gi|170682678|ref|YP_001745332.1| transcriptional activator TtdR [Escherichia coli SMS-3-5] gi|215488391|ref|YP_002330822.1| transcriptional activator TtdR [Escherichia coli O127:H6 str. E2348/69] gi|218701831|ref|YP_002409460.1| transcriptional activator TtdR [Escherichia coli IAI39] gi|218706685|ref|YP_002414204.1| transcriptional activator TtdR [Escherichia coli UMN026] gi|293406673|ref|ZP_06650599.1| transcriptional activator TtdR [Escherichia coli FVEC1412] gi|293416499|ref|ZP_06659138.1| transcriptional activator TtdR [Escherichia coli B185] gi|298382412|ref|ZP_06992009.1| transcriptional activator TtdR [Escherichia coli FVEC1302] gi|300818825|ref|ZP_07099031.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300901441|ref|ZP_07119526.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300937457|ref|ZP_07152283.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|301021851|ref|ZP_07185814.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|312968597|ref|ZP_07782806.1| HTH-type transcriptional activator ttdR [Escherichia coli 2362-75] gi|331654659|ref|ZP_08355659.1| HTH-type transcriptional activator TtdR [Escherichia coli M718] gi|118574170|sp|Q0TD46|TTDR_ECOL5 RecName: Full=HTH-type transcriptional activator ttdR gi|110344896|gb|ABG71133.1| hypothetical transcriptional regulator YgiP [Escherichia coli 536] gi|170520396|gb|ACB18574.1| HTH-type transcriptional activator TtdR [Escherichia coli SMS-3-5] gi|215266463|emb|CAS10901.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|218371817|emb|CAR19672.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218433782|emb|CAR14699.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|284923088|emb|CBG36181.1| LysR-family transcriptional regulator [Escherichia coli 042] gi|291426679|gb|EFE99711.1| transcriptional activator TtdR [Escherichia coli FVEC1412] gi|291431855|gb|EFF04838.1| transcriptional activator TtdR [Escherichia coli B185] gi|298277552|gb|EFI19068.1| transcriptional activator TtdR [Escherichia coli FVEC1302] gi|300355143|gb|EFJ71013.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300397867|gb|EFJ81405.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|300457492|gb|EFK20985.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|300528610|gb|EFK49672.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|312286815|gb|EFR14726.1| HTH-type transcriptional activator ttdR [Escherichia coli 2362-75] gi|323188496|gb|EFZ73781.1| HTH-type transcriptional activator ttdR [Escherichia coli RN587/1] gi|331048041|gb|EGI20118.1| HTH-type transcriptional activator TtdR [Escherichia coli M718] Length = 310 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LVR++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|313499116|gb|ADR60482.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 300 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 24/297 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V +G F A QL + +S +SR+I+ LE +G +L R R L LT G Sbjct: 3 DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + S +P G+LR++ + L L + FL YP +Q Sbjct: 63 ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L N+ +D+ + D A+R+R + +L+ R+L M AAP + + REP Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPDE 182 Query: 183 IQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + L + L+ F L P + L EPR++ ++ ++ Sbjct: 183 LASLPVLGAAEADRLVHFRLLGPHGKQQEISL--------EPRLA---IDDFVVRNAAVR 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G LP ++ LVR++ D P + YP G L A R +I Sbjct: 232 AGLGFTALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285 >gi|217979461|ref|YP_002363608.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] gi|217504837|gb|ACK52246.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] Length = 299 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 140/298 (46%), Gaps = 14/298 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F V GSF AA QL + ++ SR++ LE+ +G +L R R L +T+ G + Sbjct: 5 DDLITFVRVVERGSFIAAARQLGIPPATASRKVQDLESRLGAELLRRTTRRLVVTDAGRE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ + ++ ++ + + KPSG LR+ +G L+ L +F L P++QIQ Sbjct: 65 VYERAAQGLNLIDEAELVAKTHTSKPSGVLRVLAPYAIGGLLIDRMLSDFQKLCPEVQIQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+N+ +D+ D A+R+ ++ S + R L+ A+P YL SI++ Sbjct: 125 LTLNNEPLDLIEHGFDVALRI-GALKDSGYVVRHLLNGERRIVASPAYLAANGPIESIED 183 Query: 186 LDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L+ H + + +F+ A + PRI+ N + + + G G A+ Sbjct: 184 LETHAFLAASIDSSGGAAAYNFSNGAEAKQLTLSPRIAS---NEPSVALNHALNGEGFAI 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L ++ V+ P+L V+ P + +P + K++ F +F+ +R Sbjct: 241 LAEFYVR--PHLEDGALKVVLPQWHSAEDLCASLIFPRHATSDPKIRMFIDFLGGSSR 296 >gi|152985802|ref|YP_001348163.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960960|gb|ABR82985.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 307 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 31/299 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F A +GSF+ AE+L + S++++ ++ LE E+G +LF R R L LTE G Sbjct: 5 NALAMFVATAETGSFSRGAERLGKTPSALTKAVAHLEAELGARLFERTTRSLALTEAGQI 64 Query: 66 LHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L T +IEL ES ++ G+LR+A LQ FL +P I Sbjct: 65 YLEAARQSLETLRTAGQEIELLESELR--GELRLAAPPSFAAAFLQQACASFLEAHPRIS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ LD +D+S D +R PI L+ R L + A+P YL P Sbjct: 123 LRVDLDETFLDLSEGGYDLGLR-DGPIDLPGLVARPLAPNQIVLCASPAYLARQPAPQGP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVN--------SYLSIMQ 233 ++ ++H + F P + F W+ + + I +PR N +Q Sbjct: 182 EDFERHAWLVFQH--PSLDQHFWWMERGGIRQRIDQPRPRLASDNYDFLLAHLLAGLGLQ 239 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED------VITPSFTVYFCYPEALKNTGKLKAF 286 +C S LL + LVR++ D PS ++ YP +NT K++AF Sbjct: 240 FCPQWSVAPLLAEG------RLVRLLGDHHFDPGPFGPS--IHVLYPGHRRNTRKVRAF 290 >gi|323499606|ref|ZP_08104575.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315346|gb|EGA68388.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 294 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 145/292 (49%), Gaps = 17/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF VA SFT AAE L++ ++ +S+ ++ LE+E+ +L +R R L+LT+ G Sbjct: 5 DDMMVFAKVADKRSFTLAAEDLNIGKARVSQIVTRLESELNTRLLHRTTRSLSLTDSGVA 64 Query: 66 LHR---VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 ++ SE+ H+ T E+Q + PSG +R++T L L +FL YPDI Sbjct: 65 YYQKCLAISELAHEANT---EIQNVNQVPSGVIRLSTP----STTLVSVLSDFLKRYPDI 117 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ +I + ++ D A+R ++ SSL KL A P YL + S Sbjct: 118 QLDIIESDSYSNLIESRCDIALRASSSLEDSSLYAIKLGDFTDMICATPKYLSQFPQVTS 177 Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++L + + ++ + + F N + + PR+ QV + +S+ ++ + G Sbjct: 178 VEDLLQMDWVSHHIVHGEKQLTFTNAQGEITKLQHAPRV---QVRTSISVREFVLNDLGF 234 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A++P ++V+ + ++RI+ +V +Y Y E +++A +F+ Sbjct: 235 AIMPSFMVQEALEQGQVMRILPEVHNHKIPLYAVYQEKAMMPLRVRALIDFL 286 >gi|300905800|ref|ZP_07123534.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|301301899|ref|ZP_07208033.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|300402399|gb|EFJ85937.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300842880|gb|EFK70640.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|315256972|gb|EFU36940.1| LysR substrate binding domain protein [Escherichia coli MS 85-1] Length = 310 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 19/292 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEV---YHKL--ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 E+ YH+L + TQI+ +P G +RI + G++ + + E + YP++ Sbjct: 71 EHALEILTQYHRLVDDVTQIK-----TRPEGMIRIGCSFGFGRSHIAPAITELMRNYPEL 125 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ L ++ ID+ D D IR+ I I L AAP YL+ +P S Sbjct: 126 QVHFELFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQS 184 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +QEL +H+ + + + M W + ++S L NS ++Q+ + G GI Sbjct: 185 LQELSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGI 241 Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L ++ V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 242 MLRSEWDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|260429957|ref|ZP_05783932.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260418880|gb|EEX12135.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 312 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 5/245 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V GSF AA L ++ +SI+R I+ LE ++G +L R R ++LT G+ + Sbjct: 11 IRVFLSVVEQGSFAGAARSLRMTPASITRIIAQLEEDLGQQLLLRTTRQVSLTGAGAMVA 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + E+ ++ G+L I + G L+ G + F L YP+I + + Sbjct: 71 ARYRPVLEEFDRVTEEITRTTRPDRGRLAINAPMSFGMRLMPGLVASFRLAYPNIALDVQ 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI + D AIR+ P S I R++ + AAP P + +EL Sbjct: 131 LTDVLVDILDESCDLAIRISDPPGDKSTIWRRICHVPRQVVAAPALFDRIPRPETPEELP 190 Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +++G E + + ++ R + +L M V G+G+ LPD Sbjct: 191 PAQCLSYGHG--GAAESWTFTRGSLRRTVRAGTDVVSNNGEFLHAM--AVSGNGMVNLPD 246 Query: 247 YIVKD 251 ++V++ Sbjct: 247 FLVRE 251 >gi|260554158|ref|ZP_05826417.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260404700|gb|EEW98211.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 301 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 20/264 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A ++ S++S+ IS LE +GI+L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGIRLLNRSTRQFQLTSEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + L+ EL++S KP G++RI T+ + L + F YP+I+ Sbjct: 71 YEQGLQILNNLD----ELEQSVTAHHKPQGRIRIHTSFSYWTHFLLPCISLFNQRYPEIE 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ L ++ I++ D AIR P++SS+L+ R L + H + +P Y++ P Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTHKYYVCSPTYIEKYGCPKHP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL H L+ + ++ WL AT + + R+ L+VN +I+Q V G G Sbjct: 186 DELHAHRLLD----VSYQRQNKTWLFKKATQEINLTPSRV--LKVNQGEAILQLAVSGVG 239 Query: 241 IALLPDY---IVKDNPNLVRIMED 261 IA L ++ L++I+ED Sbjct: 240 IAQLNEFQIQKAIQQKQLIKILED 263 >gi|332529299|ref|ZP_08405261.1| transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041216|gb|EGI77580.1| transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 308 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 136/300 (45%), Gaps = 29/300 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L+++ VA SFT AA+ L L ++S+S+ + LE +G +L +R R + T+ G Sbjct: 5 EQLQIYTRVAELASFTQAADSLGLPKASVSQAVQQLEASLGTRLLHRTTRRVQTTQDGQV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E+ +L+ Q + G+LR+ + + + L EFL L+P+++++ Sbjct: 65 FYERCKELLAQLDDAQSLFRRGGEAVRGRLRVDMPSGVARQQVLPRLGEFLALHPELELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC +R+ + S+L+ R L + A+P YL P ++++ Sbjct: 125 LSSTDRRVDLVREGFDCVLRIGT-LDDSALVARPLGYMVQLNCASPAYLAQHGTPQTLED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV-DRPIGE-----------PRISCLQVNSYLSIMQ 233 L KH L+ ++L T+ RP+G P L VN + Sbjct: 184 LAKHRLV-------------HYLPTLGGRPVGWEYVEQGDVRNLPMAGALTVNDTAAYSA 230 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 C+ G G+ P + + LV ++ P+ V Y + + + F N++ Sbjct: 231 ACMAGLGLIQAPAIGTRPLIEQGLLVEVLPQWRAPAMPVSLVYANRRQLPRRTQVFMNWL 290 >gi|289807257|ref|ZP_06537886.1| putative DNA-binding transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 196 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLS 179 Query: 188 KHNLITF 194 H+ + + Sbjct: 180 SHSWLEY 186 >gi|115376998|ref|ZP_01464216.1| LysR-family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|310824482|ref|YP_003956840.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115365976|gb|EAU64993.1| LysR-family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309397554|gb|ADO75013.1| transcriptional regulator, LysR family [Stigmatella aurantiaca DW4/3-1] Length = 310 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 142/296 (47%), Gaps = 15/296 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L+ F RSGSF+ AA + S+ S++++ LE +G++L R A+GL LT +G Sbjct: 20 WPSLQSFVQSVRSGSFSAAARDAGTTPSAFSKKVARLEAHLGVRLLIRGAKGLELTPEGQ 79 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + + +E ++ ++ +P G +R++ +D G++ L + F YP +++ Sbjct: 80 ELFQRVDRAFEDVEDACMQATRAT-EPRGLVRVSAAMDTGRDWLMPRIPRFARAYPHVEL 138 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ + L++R+L + A+P YL+ P + Sbjct: 139 EVSLSDRFVDLLAERFDVALRVGE-FDDGRLMRRRLGRMRRCFCASPAYLRARGVPRRYE 197 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL H + + + D L + R P G ++ + Q + G G+A Sbjct: 198 ELAGHVKLAY---LRGTQRDPWELPSGGRLHPQGP-----FASDNNAGLRQLTLAGLGVA 249 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP+ + ++ L ++E P + +P+ +++AF +F +AR Sbjct: 250 WLPELTIAEDVQRGALQVLLEHPPDPGMPISLAFPQGRLLAPRVRAFLDFFAEEAR 305 >gi|71734420|ref|YP_275148.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554973|gb|AAZ34184.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +ET G +L +R R L LT G Sbjct: 8 RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L +L +K +L YP + L++ Sbjct: 68 RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + ++I R L A+P YL P S QEL Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F P+ P L N + +++ V G+GI L P + Sbjct: 187 HNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ ++ D + ++ Y + L+ +F+ Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 287 >gi|90420070|ref|ZP_01227978.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans SI85-9A1] gi|90335404|gb|EAS49154.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans SI85-9A1] Length = 296 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 17/289 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R+F + GSFT AA L L +S+ + LET +G +L R R + T G Sbjct: 5 DRIRLFVRIVERGSFTSAASDLGLPRSTATEATKSLETYLGTRLLDRTTRHVAPTLDGES 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + L+ + + +P G LR+ L + L L EFL YP I + Sbjct: 65 YYRRCITILADLDEAEGAFR--GAEPRGTLRVDAHSRLTRTFLLPGLPEFLNRYPLIDLH 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC IR P + S LI R L TI A+P YL+ P + + Sbjct: 123 LGQGDRLVDLVREGVDCVIRAGHP-EDSRLILRSLGTIEEITVASPTYLQRHGMPATPDD 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H + F G ++P +F V RP+ P S + V++ ++ LG G Sbjct: 182 LHGHQTVGFVSSRTGGILPL---EFTMDGIV-RPVRLP--SRVIVSNSDAMADLARLGLG 235 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + P Y D+ LV ++ D + YP+ + +L+ F Sbjct: 236 LVQAPRYRFADDLASGRLVEVLTDFPPSPTPLSALYPQNRQLAPRLRVF 284 >gi|167824453|ref|ZP_02455924.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 9] Length = 301 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 14/302 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 5 DLPALATFARIVVAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ P+ W P + N + + G+GIAL Sbjct: 184 ADLCAHRCIVLGEQ-PR----VEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297 + V P+L R++ + + + ++ YP +++ F +++ ++ R W Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296 Query: 298 KF 299 ++ Sbjct: 297 RW 298 >gi|117625373|ref|YP_855415.1| transcriptional activator TtdR [Escherichia coli APEC O1] gi|331648861|ref|ZP_08349949.1| HTH-type transcriptional activator TtdR [Escherichia coli M605] gi|115514497|gb|ABJ02572.1| putative transcriptional regulator YgiP [Escherichia coli APEC O1] gi|331042608|gb|EGI14750.1| HTH-type transcriptional activator TtdR [Escherichia coli M605] Length = 328 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 29 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 88 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 89 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 148 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 149 LFDRQIDLVQDNIDLDIRINDAI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 207 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 208 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 264 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LVR++ + S ++ Y E L + KL+ F+ Sbjct: 265 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 310 >gi|91783116|ref|YP_558322.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687070|gb|ABE30270.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 298 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 14/252 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+ + GSF AA L + +SS+++ I LE +G +L R R + T G Sbjct: 5 DAMRLLVRIVERGSFAAAARDLDVPRSSVTQGIQELERRLGAQLLQRTTRQVRPTLDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + +E + E + KPSG +R+ L + + L FL YPDIQ+Q Sbjct: 65 FYRRCLGIIADVE--EAEAAFNGAKPSGLVRVDVHGTLARYFMMPALPSFLDTYPDIQVQ 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D++ D DC +R+ + + SSL+ R++ + +A+P YL P + Sbjct: 123 ISEADRLVDLTRDGVDCVLRVGE-LPDSSLVGRRIAMLKQGTFASPEYLARHGVPQHPAQ 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L+ H ++ + G++IP +L R S + + +I LG G Sbjct: 182 LEGHRMVGYLSQITGEIIP-----LEFLVAGKRQSMTLPASVMVTGAETNI-SAARLGLG 235 Query: 241 IALLPDYIVKDN 252 + +P Y V D+ Sbjct: 236 LVQVPRYRVADD 247 >gi|290511282|ref|ZP_06550651.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289776275|gb|EFD84274.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 299 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 14/294 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR G+ + AA +L ++ S+S + LE +G LF R R + LTE G Sbjct: 6 YNQIRIFQSIAREGTISAAARKLEITPPSVSNALKLLEEHIGHPLFVRTTRRIELTETGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T+ LET+ L++ + +PSG +RI + +L+ + F YP IQ+ Sbjct: 66 QLLEQTAAAVEVLETSLESLRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + + ++I + D IR ++ + + + YA+ YL P Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAVPA 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L+ H LI + ++P + D TV+ P L N + G Sbjct: 186 DLNHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + I + P+ + +MED VY YP+ T ++KA +F+ Sbjct: 240 GIGRLFEPIWRLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFL 293 >gi|171318438|ref|ZP_02907593.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171096352|gb|EDT41254.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 301 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 8/296 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE+++G++L +R R TLT+ G Sbjct: 5 DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E + + + G L + +LG+ + + F +P++ Sbjct: 65 AQFHAQVLRILAEVERAETLMTDRRGTVGGLLCVTAPGELGRLRIAPLIAAFQRRHPELI 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + S++I R+L H A+P Y+ P Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRI-GSLADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 EL H I GD P+ F+ + + + L N + + G+GIAL Sbjct: 184 AELRAHRCIVLGDQ-PRAEWRFDGAQGM---VAVEVTAALLTNDGGAARTLALEGAGIAL 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + V D LVR++ P+ ++ YP +++AF +F+ + RD Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFLREQLRD 295 >gi|170734025|ref|YP_001765972.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169817267|gb|ACA91850.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 295 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 138/274 (50%), Gaps = 14/274 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SF AA +L++S SS +R + +E +G +L R R L+LT+ G H Sbjct: 7 MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAG---H 63 Query: 68 RVTSEVYHKL-ETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +++ H + E ++E +S+ +P G L+IA + G ++L + F + +P I Sbjct: 64 LYLAQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVP 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + D + L + I +++L++R L + AAP Y++ P Q Sbjct: 124 EVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYVERHGTPAHPQ 183 Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + F D + + + F+ T R P S N L I + + G GIA+ Sbjct: 184 DLASHACLAFHADFMGEYLS-FDHDQT--RITVRPNKSASSNNIGL-IRNWALSGMGIAV 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 LPD++VK D+ L+ ++ + + YP Sbjct: 240 LPDFLVKSDLDDGRLLALLPGYRLEALEMNVAYP 273 >gi|330965341|gb|EGH65601.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 305 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AA+ LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + + +P G LR+ + LG+ ++ L EF YP +++ Sbjct: 64 AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL ++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQVTCASREYLQQHGTPLQLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H +I + ++ P + ++C + VNS + C G G+ Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHGLACSISVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y + + LV ++ P + YP + + +++ F +++ Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALKALYPPHRQLSRRVRVFVDWL 290 >gi|312960390|ref|ZP_07774899.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311285275|gb|EFQ63847.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 291 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 18/289 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF V R + AA L + Q+++ R+I+ LE + LF R + G LT Sbjct: 1 MNWDDARVFLAVCRESTLRGAARVLGVDQATVGRRINALEKSLSATLFLRTSEGYALTAV 60 Query: 63 G-SKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 G + LH V K+E + ++L+ + +G +R++TT L + L + Sbjct: 61 GEAALHSV-----EKMERSALDLERQIQGLDDRLTGTVRVSTTDSLAIDFLIPAIASLHG 115 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+++QL + + ++ AD A+R +P + LI R++ + +AA Y+ Sbjct: 116 KHPDVRVQLDASTQILSLAKREADIAVRNTRP-DNPDLIARRIACWPVGLFAAQAYIDRH 174 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P D H+L+ + ++ L V P+G RI ++S L + + Sbjct: 175 GVPDPGSLFDGHDLVVY----QPYLQTHKDLTLVSEPLGRGRI-VTALSSSLLVRRSIAA 229 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKA 285 G GI +P Y + LVR+ + + P + V+ L++T +++A Sbjct: 230 GLGIGEIPVY-TGERDGLVRLWPERVRPLPYDVWLVTHADLRHTARVRA 277 >gi|187924251|ref|YP_001895893.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715445|gb|ACD16669.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 294 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 133/286 (46%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS T AAE+ +S + + + I LET + +L R R +LTE G + + Sbjct: 7 MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLATRLLTRTTRRQSLTEIGRQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + + P G L++ + G + + EFL +PDI ++L Sbjct: 67 EQCRRILADVKGAESLAEAMAAAPRGVLKVTVPLTYGVEVFSPAMTEFLSAWPDITLELD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ ID+ + D ++R+ + + SS + R L M A A+P YL P + ++L Sbjct: 127 LSNRIIDLVEEGFDASVRIGR-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + F + E L + + R + N+ ++ + G G+ L P+ Sbjct: 186 HHECLGF---LHWGREGLWRLGGDNADECQLRAGRFRANNGQALKVAALHGFGLVLQPEA 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + LV ++ED + V+ YP + T KL +F +F+ Sbjct: 243 LLAREIASGELVSVLEDYLPDGAPVHLLYPRDRRATPKLTSFIDFV 288 >gi|209550308|ref|YP_002282225.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536064|gb|ACI55999.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 299 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 9/282 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V + GS + AA +L L+Q +I R + LET +G +LF R GL T+ Sbjct: 7 WDFYRAFLTVLQQGSLSAAARELGLTQPTIGRHVDALETAIGAELFTRSPNGLLPTDAAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + +G +R++ + + +L G YP++QI Sbjct: 67 ALKPYAETLAATTAALLRTASGERERVAGTVRVSASEVIAVEVLPGIFGPLQDAYPELQI 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + D+ AD A+R+ +P Q +L+ R++ I + +A YL+ P ++ Sbjct: 127 ELSASDAIEDLVNREADIAVRMAEP-QQGALVVRRIGDIPLGFHAHRRYLERHGIPQTLA 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243 +L H LI F ++ V + P I + +S L+ + G GI L Sbjct: 186 DLADHRLIGFD-------RQTAYVRLVTKRYEVPGIDFSYRTDSNLAQLSAIRAGVGIGL 238 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + ++NP+LV ++ + + E+LK + + +A Sbjct: 239 CQIGLARNNPDLVHLLPEAFKIPLATWVAMHESLKTSPRCRA 280 >gi|116251096|ref|YP_766934.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255744|emb|CAK06825.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 300 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 14/298 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G F+ AA +L++S + + + LE +G++L R R ++LTE G + Sbjct: 7 LMVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +S++ +L+ S P G L++ T+ + + LL + EF+ LYP I + Sbjct: 67 ERSSQILAELDEADRTAGALSTTPRGTLKVYTSSAIVRFLLP-VVSEFMELYPSISLDFS 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D +R P SSL+ RKL +P Y ++ P + E+ Sbjct: 126 VGERMVDMIEDGYDLVMRTVPP-PDSSLVARKLTPWRHMLVCSPAYFQSHPMPKTPAEVA 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVL-GSGIALLP 245 HN + + P E W E +IS V++ ++++ L G GI L P Sbjct: 185 DHNCLQYA-YYPYGDE---WRFEDGEGNKESVKISGNVVSNSAEMLRFLTLTGRGIFLAP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 ++V D+ LV+IM D F + YP K++ F + + F + R W Sbjct: 241 SFVVFDDIAEGRLVKIMPDYRPVEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHRKW 298 >gi|320325421|gb|EFW81486.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320327438|gb|EFW83451.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330877344|gb|EGH11493.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 306 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R R L LTE+G+ H Sbjct: 14 IETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + LE + L +P+G+LRI G+ + F + ++ ++ Sbjct: 74 AVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 133 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P + + + R L T + AAP YL+ P + ++L Sbjct: 134 FTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTFEDL 193 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 H I FG WL D+ E R + L + + + + GIA L Sbjct: 194 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 250 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++++ LV I+ + T ++ +P ++ K++A Sbjct: 251 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 295 >gi|312170846|emb|CBX79106.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia amylovora ATCC BAA-2158] Length = 305 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 10/269 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA+Q+ LS S++S+ ++ LE E+ +KL R R L LTE G Sbjct: 7 MSVFTKVVELGSFTAAAKQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGKIYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +L + P G LRI ++ + QNLL KE L YP + + L+ Sbjct: 67 QGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQEYPGLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + D+ D D AIR+ + SSL ++L ++ M AA YL P ++ Sbjct: 127 TGIRAPDLIADGLDLAIRV-GALPDSSLFAKRLGSMPMVVCAAKAYLLQFGTPEKPSDIS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + + P DF+ ++ I N +++++ G+GIA +P Sbjct: 186 NHSWLEY-SVRPD--NDFDLISPEGIAIRLSPQGRFATNDAQTLIRWLKAGTGIAYVPLM 242 Query: 248 IVKD--NPNLVRIM----EDVITPSFTVY 270 + D N V I+ + V P + +Y Sbjct: 243 WIIDEINAGEVEILFAHYQSVPRPVYALY 271 >gi|317048749|ref|YP_004116397.1| LysR family transcriptional regulator [Pantoea sp. At-9b] gi|316950366|gb|ADU69841.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 319 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 126/288 (43%), Gaps = 23/288 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VAR SF+ A + + SSI RQI LE + LF R R LTLT+ G L Sbjct: 23 LGVFVDVARESSFSAAGRRRGRTPSSIGRQIDALEAHLDTPLFLRSTRHLTLTDAGEALL 82 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L Q EL + +G LR+A G+ + + E +PD++++L Sbjct: 83 IRARQILDSLVDVQQELASMKGEVTGILRVACYPTFGKRYVLPVMGELARQHPDLRLELD 142 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D + D IR+ + S+LI ++ A+P YL P S+ +L+ Sbjct: 143 LTERLADPVAERLDLVIRIGD-MADSTLIGSRIAMQTRVLCASPAYLAQQGMPASLTDLN 201 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSG 240 H LI DL+ C W A + P P C + + + V G G Sbjct: 202 AHRLIDKLHGSDLL--C-----WSAVLGHPTRASNTAPVFGC---DDFEGMRLAAVEGLG 251 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 IA LPD++V ++ I V+ F + P+A L+A R+ Sbjct: 252 IAYLPDWVVGED-----IQAGVLQQIFPEWSAQPQATTGIYALRALRH 294 >gi|158425744|ref|YP_001527036.1| putative transcription regulator [Azorhizobium caulinodans ORS 571] gi|158332633|dbj|BAF90118.1| putative transcription regulator [Azorhizobium caulinodans ORS 571] Length = 295 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 16/262 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF VAR G AA +L L ++++R+++ LE E+G K+F R G T Sbjct: 1 MNWDHARVFLAVAREGQMLGAARKLGLDHATVTRRLNALEAELGAKVFERSPTGCAPTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L + V ++ Q L + + SG +RI G L L F L+PD+ Sbjct: 61 GEQLLAIAERVESEMVKAQSLLGNADLTLSGTVRIGAPDGFGTYFLAARLAAFATLHPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 IQL+ + +S AD A+ L +P ++ L+ RKL + YAA +L + Sbjct: 121 VIQLVPLPRTFSLSRREADIAVVLDRP-RTGRLVGRKLTGYSLSLYAARAHLDRFGPIET 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYCVL 237 ++L +T+ ++D + +D + R C V M+ Sbjct: 180 PEDLKDRMAVTY-------VQDLTYSPGLDYMEALTGLCARRFECASVAGQ---MEAVRA 229 Query: 238 GSGIALLPDYIVKDNPNLVRIM 259 G GI +L DY + +LV ++ Sbjct: 230 GVGIGILHDYAAAPDADLVPVL 251 >gi|15891140|ref|NP_356812.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15159488|gb|AAK89597.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 297 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 137/295 (46%), Gaps = 20/295 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + LR F VA +G + AA +L +S+S +SR++ +E E+G++L R RG LTE Sbjct: 1 MDIEDLRTFVAVADAGGVSAAARRLGISKSIVSRRLFRIEAELGVQLLARTTRGAALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G +T + + +I+ ++ P+ G+LRIA + G L E Sbjct: 61 G-----ITFRDHAARASAEIDTARETILPAGELHGRLRIAMPLTFGPTHFAPVLAEMARQ 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + I ++ +D+ + DCAIR +Q S+LI +++ IH A+P Y+K Sbjct: 116 HPQLHIHTSYSDRFVDLIAEGFDCAIRGAY-LQDSNLIAKRVGPIHGKLVASPAYIKAHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P +++L H + G + M D + + TV +P G+ + +S ++ G Sbjct: 175 SPEMVEQLVNHQALMQGTEAWQFM-DGDRIVTV-QPQGK-----FKADSATALAAAAAAG 227 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA LPD I + LV IM P VY P + K++ + Sbjct: 228 LGIAWLPDCITHAYLASGALVPIMTRYPVPPGAVYVVRPPSQHPARKVRVLTEML 282 >gi|71734272|ref|YP_273747.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554825|gb|AAZ34036.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 302 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R R L LTE+G+ H Sbjct: 10 IETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + LE + L +P+G+LRI G+ + F + ++ ++ Sbjct: 70 AVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 129 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P + + + R L T + AAP YL+ P + ++L Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTFEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 H I FG WL D+ E R + L + + + + GIA L Sbjct: 190 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 246 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++++ LV I+ + T ++ +P ++ K++A Sbjct: 247 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 291 >gi|16128867|ref|NP_415420.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|89107750|ref|AP_001530.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157160423|ref|YP_001457741.1| LysR family transcriptional regulator [Escherichia coli HS] gi|170020698|ref|YP_001725652.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739] gi|170080558|ref|YP_001729878.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|194438712|ref|ZP_03070799.1| transcriptional regulator, LysR family [Escherichia coli 101-1] gi|238900158|ref|YP_002925954.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253774071|ref|YP_003036902.1| LysR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161014|ref|YP_003044122.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|256023399|ref|ZP_05437264.1| predicted DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|300929593|ref|ZP_07145056.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|300949740|ref|ZP_07163717.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300955454|ref|ZP_07167827.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|301024419|ref|ZP_07188104.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|312971028|ref|ZP_07785207.1| uncharacterized HTH-type transcriptional regulator ycaN [Escherichia coli 1827-70] gi|2495398|sp|P75836|YCAN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator ycaN gi|1787128|gb|AAC73986.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|4062476|dbj|BAA35635.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|157066103|gb|ABV05358.1| transcriptional regulator, LysR family [Escherichia coli HS] gi|169755626|gb|ACA78325.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739] gi|169888393|gb|ACB02100.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|194422344|gb|EDX38344.1| transcriptional regulator, LysR family [Escherichia coli 101-1] gi|238862261|gb|ACR64259.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242376715|emb|CAQ31428.1| putative transcriptional regulator LYSR-type [Escherichia coli BL21(DE3)] gi|253325115|gb|ACT29717.1| transcriptional regulator, LysR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972915|gb|ACT38586.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977129|gb|ACT42799.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|260449954|gb|ACX40376.1| transcriptional regulator, LysR family [Escherichia coli DH1] gi|299880391|gb|EFI88602.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|300317646|gb|EFJ67430.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|300450854|gb|EFK14474.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300462481|gb|EFK25974.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|309701176|emb|CBJ00476.1| predicted DNA-binding transcriptional regulator [Escherichia coli ETEC H10407] gi|310336789|gb|EFQ01956.1| uncharacterized HTH-type transcriptional regulator ycaN [Escherichia coli 1827-70] gi|315135548|dbj|BAJ42707.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|323938006|gb|EGB34268.1| LysR substrate binding domain-containing protein [Escherichia coli E1520] gi|323942816|gb|EGB38981.1| LysR substrate binding domain-containing protein [Escherichia coli E482] gi|323962892|gb|EGB58466.1| LysR substrate binding domain-containing protein [Escherichia coli H489] gi|323973227|gb|EGB68419.1| LysR substrate binding domain-containing protein [Escherichia coli TA007] gi|332342343|gb|AEE55677.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 302 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SCIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ED T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|313498251|gb|ADR59617.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 294 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/295 (23%), Positives = 142/295 (48%), Gaps = 12/295 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F V +GSFT AA++L +S+ S+SR++ LE +G++L R R L T G Sbjct: 4 YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +++ + ++ + G LR++ + L L EFL L+P + + Sbjct: 64 HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L ++ +D+ + D A+R+ ++ SSLI R++ ++ A+P YL+ P Sbjct: 124 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIASVERVYCASPAYLQARGVPGKPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL H+ + +G W +++ ++ N+ + + G G+ Sbjct: 183 ELAAHDCLPYGH-----SRQVQWQFHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTY 237 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP +IV LV ++++ + + YP+ + ++ F + FL+AR Sbjct: 238 LPTFIVGQALAEGQLVTVLDEWRPSALQLSAVYPQHRQVARPVQGFVS--FLRAR 290 >gi|262278736|ref|ZP_06056521.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259087|gb|EEY77820.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 296 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/274 (24%), Positives = 130/274 (47%), Gaps = 8/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VAR GSFT AA ++ +SQS++S I GLE +G+ L R R ++ T G Sbjct: 6 NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + S + +++ L +P+G +RI + + +L L++ YPD+Q Sbjct: 66 ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLEKIAGDYPDVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +DI + D +R + + R + M A P Y + P + Sbjct: 126 VELAANSGMVDIVAERFDAGVRFGSRVADGMIAVRISADVKMAVIATPEYFEKYGIPATP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 ++L H I + + + W D + +I + N I++ G G+A Sbjct: 186 KDLINHQCIGYRLTTQGSI--YAWEFMKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243 Query: 243 LLPDYIVK---DNPNLVRIMED--VITPSFTVYF 271 +P +++ D LV+++++ + P + +Y+ Sbjct: 244 YIPQELIQQDLDQGKLVQVLDEYSIQFPGYHLYY 277 >gi|183596306|ref|ZP_02958334.1| hypothetical protein PROSTU_00041 [Providencia stuartii ATCC 25827] gi|188023910|gb|EDU61950.1| hypothetical protein PROSTU_00041 [Providencia stuartii ATCC 25827] Length = 306 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 145/304 (47%), Gaps = 25/304 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF + GS + AA++L +S++ ++R ++ +E G++L R R L+LT G ++ Sbjct: 7 VQVFISIVEHGSMSAAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTSAGEGVY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ T ++ Q + + +G +RI+ + L + EFL YP++ I L Sbjct: 67 QQALKLNALSLTLPVQQQHDATQLTGLVRISCAQSIASQALSVAITEFLQHYPNMAIDLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + NK +++ D D AIR+ ++ SLI + L T H AAP + K+ + P+ ++L Sbjct: 127 ITNKAVNLIEDRIDLAIRITNQLE-PSLIAKPLSTCHSVICAAPSFFKDKKIPIKPEDLA 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSG 240 +T FG + + +D GEP L + + + Q + G+G Sbjct: 186 PLECLTYNFFGRSLWRFEKD-----------GEPFSVLVGGRLSADESVFLAQAALNGAG 234 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 IA+ P VK ++ L++++ D + +Y Y L+A +F+ F + Sbjct: 235 IAMQPYLSVKKYLESGELLQLLPDYVPQPLGIYAVYASRQNMPTTLRAVLDFLGNWFTTS 294 Query: 295 RDWK 298 W+ Sbjct: 295 EYWQ 298 >gi|114569714|ref|YP_756394.1| LysR family transcriptional regulator [Maricaulis maris MCS10] gi|114340176|gb|ABI65456.1| transcriptional regulator, LysR family [Maricaulis maris MCS10] Length = 302 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 133/296 (44%), Gaps = 18/296 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW V V+ +GS T AA +L +SQ +++R++ LE+ G LF R LT G Sbjct: 3 DWSDYLVCLAVSEAGSLTAAAHELGVSQPTVTRRLQALESRFGEPLFEREQGQTRLTPLG 62 Query: 64 SKLHRVTSEVYHKLETTQIE----LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 K+ + E + IE Q+ S+ SG + ++ + LG + L L+ F Sbjct: 63 RKV--TAHAARMRDEASAIERAAMAQDQSL--SGLVVVSASEGLGADWLPLALESFQAAN 118 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P I I + + N +++ AD A+R P SL+ R+ T+ YAA YL Sbjct: 119 PGIGIDIAIKNNSANLADREADIALRWNGPGTQQSLVGRRGATVGAGLYAAKSYLDKHGR 178 Query: 180 PLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P ++++L H + + GD F W +T PR + NS S ++ Sbjct: 179 PNAVEDLADHAGVGWSIGDY-------FGWPSTQTGAPVLPRHVSFKSNSPASHVKGLEA 231 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G G+ + + +++ L RI+ D S ++ E ++ + +++A + I + Sbjct: 232 GFGVGVTSHRLARNSIYLERILPD-FESSLDLWVVAHETVRKSARVRAAYDHIIAQ 286 >gi|152987996|ref|YP_001346595.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963154|gb|ABR85179.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 317 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT A++QL+ + + +SR ++ LET + +L R R + LTE G + Sbjct: 6 NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ + +GQ+ + + + Y D+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGRLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D AI + + S I +++ + A+P YL+ P EL Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRRNGTPSEPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H+ + L+ + WL D P G+ +S QVN ++ + G GI Sbjct: 186 ANHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y D+ LVR++ VY YP K+K + ++ Sbjct: 241 ILPVYSAIDDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYL 291 >gi|311104771|ref|YP_003977624.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310759460|gb|ADP14909.1| bacterial regulatory helix-turn-helix protein, LysR family protein 49 [Achromobacter xylosoxidans A8] Length = 306 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 21/296 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 DWD LR F VAR+ + AA +L + +++SR+I LE E+ LF + + G LTE Sbjct: 2 LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVSRRIRALEAELDTLLFEKSRSAGFVLTE 61 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L ++ + + + L SG LRI T G +L +F YP Sbjct: 62 DGQRLFVHAEQMESTVHSARENLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ + + +S AD AI + +P Q + KL + Y P YL Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCSKLCDYTLRLYGTPGYLARHPPIR 180 Query: 182 SIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +L +H+ I + D + + +ED + V L+ S ++ + Sbjct: 181 ERADLAEHSFIGYVDELLFSERLRYLEDLLPASKV----------VLRSTSVVAQYHAAL 230 Query: 237 LGSGIALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G +A+LP +I +P L ++ D IT SF +Y C+ E L+ ++ A +FI Sbjct: 231 QGQSLAILPCFIAAQDPRLTPVLADEVEITRSFWMY-CH-EDLRKLKRVTALWDFI 284 >gi|148654094|ref|YP_001281187.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148573178|gb|ABQ95237.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1] Length = 304 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 133/276 (48%), Gaps = 12/276 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F + SGS T A+EQL +++S++SR++ LET + +L R R T+TE G K Sbjct: 5 EDMALFVRIVESGSITKASEQLDIAKSAVSRRLKELETSLNTQLISRTTRRSTVTEAGQK 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++E ++ + + G +R+ + G L + + +P + + Sbjct: 65 YYQQACSILSEIEVLNEQISGVASQIEGTMRMTAPLSFGLMHLNDIIHNYAQQHPQLNFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + + AIR+ + ++ SS ++L I A+P Y+ P +I + Sbjct: 125 LDFSDRHIDLVEEGYEMAIRIGE-LKDSSYQAKRLTVIRRVLCASPDYIARAGMPQTIAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L +H + +G L K E + +D +I S ++ N+ ++ + G GIA Sbjct: 184 LKQHAFLQYG-LQSKQGE----IDLIDASGQHHKIETQSRIKANNGNFLLDMAIKGYGIA 238 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 +P +I + L+ +M D P+ Y YPE Sbjct: 239 YMPTFIAYQSLAEGKLIPVMADFELPTLNAYAVYPE 274 >gi|307726242|ref|YP_003909455.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307586767|gb|ADN60164.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 283 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 11/256 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W +R+F +AR+G+ AA L LS +I R++ LE +G LF R A G LTE+ Sbjct: 1 MEWSDVRIFLAIARTGTLGAAARTLQLSHPTIGRRLRALEASMGQVLFQRTADGFVLTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + L K G L++++ G +L + E+ YP + Sbjct: 61 GSVIVPLAEHMEESALAMERRLTGEQQKLEGTLKVSSADWFGAYVLPPVIAEYAREYPFV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q++++ + ++ AD A R+ P ++QR+L + Y A + S Sbjct: 121 QMEILTGTRLFSLAQREADVAFRI-VPFDGPDIVQRRLTQMRYGVYVAASHPDPAEGDGS 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H LI D D +WL G LQ N+ Q C G GIA Sbjct: 180 -----GHRLIAM-DTSTGAFPDIDWLKNRFPNAG----VVLQSNNRNVQAQMCGRGLGIA 229 Query: 243 LLPDYIVKDNPNLVRI 258 +LP + P + R+ Sbjct: 230 VLPRPVGDQLPTVRRL 245 >gi|254524649|ref|ZP_05136704.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219722240|gb|EED40765.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 305 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 2/189 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V +G F+ AA L ++ S++S+ ++ LE +G +L R R L LT +G Sbjct: 11 ELEVFVRVIETGGFSAAARTLDMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V L+ + + +P G+LR+ + + GQ+ L L FL P + + L Sbjct: 71 YERGLRVLADLDEAE-RCASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLERNPQVGVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L+++ ID+ D A+R P++SSSL+ R+L M AAP Y + P S++EL Sbjct: 130 TLNDEVIDLLEQRTDVAVRA-GPLKSSSLVARRLGATRMMIVAAPTYAQRHGLPASVEEL 188 Query: 187 DKHNLITFG 195 HN + G Sbjct: 189 QAHNRLDIG 197 >gi|218695361|ref|YP_002403028.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218352093|emb|CAU97830.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] Length = 307 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 41/305 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIA---------- 176 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV-----DRPIGEPRIS------CLQVNSYLS---- 230 +H +PK + D + L + D P G ++ ++V LS Sbjct: 177 --QHG-------VPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHG 227 Query: 231 --IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + Q+C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ Sbjct: 228 EIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRI 286 Query: 286 FRNFI 290 F+ Sbjct: 287 TVEFL 291 >gi|126444368|ref|YP_001063303.1| transcriptional regulator [Burkholderia pseudomallei 668] gi|126223859|gb|ABN87364.1| transcriptional regulator [Burkholderia pseudomallei 668] Length = 312 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 11 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF +P ++++ Sbjct: 71 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFTSAHPALRVR 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P + + + Q G Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 247 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 G+ALLP+++V+D+ +++ + F VY YP A K++A+ +FI Sbjct: 248 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 302 >gi|78060521|ref|YP_367096.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77965071|gb|ABB06452.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 330 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 126/247 (51%), Gaps = 18/247 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F AR SFT A ++L+++QS++SRQ+ LE ++ I+LF+RH R LTLT++G + Sbjct: 17 DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ S LE+ +L S + + + ++TT+ L L F YPDI ++ Sbjct: 77 LYDAISFALSDLESVIGKLSSSVGQRA--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++ D+ A+R P S+ L + ++V + +P + + Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDETDVLFRERVVAV-----CSPSLMSAAGDAA 189 Query: 182 SI--QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 S+ ++LDKH L+ D P+ ++ + + + +G PR+ L + Y ++Q V Sbjct: 190 SMKPEDLDKHVLLHLDD--PRGEWPWHGWSHLLKELGVPRLRPAGALHFSQYDQLVQAAV 247 Query: 237 LGSGIAL 243 G GIA+ Sbjct: 248 DGHGIAI 254 >gi|312884531|ref|ZP_07744235.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309367843|gb|EFP95391.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 293 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 128/268 (47%), Gaps = 13/268 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA +G F+ AA+QL S S +SRQIS LE +G L R R ++LT+ G ++ Sbjct: 10 FAAVAETGGFSAAAKQLGCSTSHVSRQISRLEERLGSTLLTRSTRLVSLTDSGIVYYQQV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 E+ LE + + SG ++++ + L L EF LYP+I +++ L++ Sbjct: 70 KELIVGLEQANDTINATQQHLSGNIKVSAAGGFVEYYLAPALMEFSALYPNITVEIDLNS 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + I+++ + D AIR + + S+LI +KL++ + A A+ YL+ P L H+ Sbjct: 130 RLINLNEEGVDFAIRYGE-VSDSNLIAKKLISRPLMAVASQSYLEKNGTPKHPAHLKDHD 188 Query: 191 -LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 L+ + ++ TV+R + N+ I++ C+ G GIA +P Sbjct: 189 CLVANKETWEFIVDGKKEFITVNRR--------WKSNNANIILEACIRGLGIAYMPKSTF 240 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYP 274 + +N + I+E + YP Sbjct: 241 EQALENKQVQPILEPFWGEGTNSWIVYP 268 >gi|197295074|ref|YP_002153615.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|195944553|emb|CAR57157.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 330 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 18/247 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F AR SFT A ++L+++QS++SRQ+ LE ++ I+LF+RH R LTLT++G + Sbjct: 17 DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ S LE+ +L S + + + ++TT+ L L F YPDI ++ Sbjct: 77 LYDAISFALSDLESVVGKLSSSVGQRA--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++ D+ A+R P S+ L + ++V + +P L + Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDDTDVLFRERVVAV-----CSPSLLTAMGDAA 189 Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 S++ +LDKH L+ D P+ ++ + + + +G PR+ L + Y ++Q V Sbjct: 190 SMKPADLDKHVLLHLDD--PRGEWPWHGWSHLLKELGVPRLRPAGALHFSQYDQLVQAAV 247 Query: 237 LGSGIAL 243 G GIA+ Sbjct: 248 DGHGIAI 254 >gi|170702369|ref|ZP_02893261.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|172061162|ref|YP_001808814.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170132728|gb|EDT01164.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|171993679|gb|ACB64598.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 325 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPDDLARFETLDTPSVDGRHV--FNLIA----PDGTRHLHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|296186344|ref|ZP_06854748.1| LysR substrate binding domain protein [Clostridium carboxidivorans P7] gi|296049145|gb|EFG88575.1| LysR substrate binding domain protein [Clostridium carboxidivorans P7] Length = 286 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 18/294 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +L+ F +AR G+ T+A+++LH++Q +S Q+ LE E+GIKL R R LT+ Sbjct: 1 MDIKQLKYFLTIAREGTLTNASKKLHIAQPPLSYQLKMLENEIGIKLIERTTRKSQLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + ++ +ETT EL++ + G L I TI ++L + +F LYP + Sbjct: 61 GKFLYNRSEKIVELVETTLKELKDFNKGIEGTLAIG-TIASTASILPEKINDFHKLYPKV 119 Query: 123 QIQLILDN--KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-RE 179 Q+ N + +D+ + +R P S +L + L HM A ++L + ++ Sbjct: 120 NFQIREGNSTRILDLLNNGIIQIGIIRCPFDSKNLKYKSLSKEHMLAAIHSNFLSSTKKK 179 Query: 180 PLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +S+ EL LI F +I N+ P I C + + S++ + Sbjct: 180 KISLIELKNLPLIIHVRFKSMIVDACSGLNF---------TPNIFC-ETDDVRSMLTWAT 229 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA++P V PN+ +++ P+ V + L N+ +NF+ Sbjct: 230 TGMGIAIVPKSTVNLIPNINLTYKEITNPNL-VTETFLVWLNNSYMSNTMKNFL 282 >gi|288549493|ref|ZP_06390697.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] gi|288318185|gb|EFC57123.1| transcriptional regulator, LysR family [Enterobacter cancerogenus ATCC 35316] Length = 363 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 128/286 (44%), Gaps = 6/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F + +GS + AA QL +Q+++SR++ LET +G++L R LT+ G + + Sbjct: 66 MRTFVRIVEAGSLSAAARQLSTTQATVSRRLQSLETLLGVRLLVRTTHTTRLTDDGERCY 125 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V + E+ ++ +P G LR+ GQ+ L L FL YP + ++ + Sbjct: 126 QHARRVIDSWLALEDEVGQNEDEPVGVLRVRAPHAFGQDQLLKPLTTFLQRYPQLSVEWL 185 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++K +D D DCAIR+ + ++ + L + AAP L S +L Sbjct: 186 LNDKSVDFLGDNLDCAIRVGAEVDPAT-VSVLLAEVPRCVVAAPSLLAQFPPVSSPDDLQ 244 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + +E ++ DRP L +S + G G+A++ + Sbjct: 245 HLPWVAISTFYQRHVELYD--GKSDRPARIAITPRLSTDSLYVARNTALTGLGVAVVSSW 302 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+++ LV ++ + + V+ YP + +L+ F I Sbjct: 303 TVQEDIREGRLVHLLPEWQPAALPVHLVYPWSRYYPARLRRFLEMI 348 >gi|148825902|ref|YP_001290655.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae PittEE] gi|148716062|gb|ABQ98272.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae PittEE] Length = 305 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 136/289 (47%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F + + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKIIETQSFTLAAKQQNISVAMASKLVSQLEEYLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLEANGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ ++ + ++ YP K++AF F+ Sbjct: 240 PKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|167625800|ref|YP_001676094.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167355822|gb|ABZ78435.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 304 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 1/189 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F VA GS T AA +L +S + S + LE E+G LF R R L LT+ G + Sbjct: 4 NDLRLFVRVADCGSLTSAAVELDISSAVASAGLKRLEKELGTTLFIRSTRSLRLTDAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 LE Q ++ + SG + ++ D+G+N+L L FLL YP+++++ Sbjct: 64 YLIHCRRALSDLEVGQRAIESTQASISGLVSLSVPSDVGRNVLLPWLDAFLLEYPELKLR 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + + D D D A+R KP + S+L+ K+ A+P Y+K E S+++ Sbjct: 124 LHIGDNLSDFYRDKIDVALRSGKP-KDSALVAFKICNSRRVLCASPDYIKRFGEVSSLEQ 182 Query: 186 LDKHNLITF 194 L +HN + F Sbjct: 183 LSQHNCLFF 191 >gi|260900096|ref|ZP_05908491.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|308110146|gb|EFO47686.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] Length = 318 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GSF AA+ S++S+ I LE+++GI+LF R R + LTE G + Sbjct: 7 LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAGRRYA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + L+ + SG L+I + G+ ++ LKEF YP I I + Sbjct: 67 NTARFVLDELTACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +DI D +IR +Q S LI R+L I + YL P + Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPSGPDAFN 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F G L+P M + + + + P + + VN S+ + C G G+ Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGASEYN-----PERNFI-VNDGESMAELCAEGLGLT 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +I +D LV I + VY Y +++ F +FI Sbjct: 240 QIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290 >gi|255525788|ref|ZP_05392718.1| transcriptional regulator, LysR family [Clostridium carboxidivorans P7] gi|255510521|gb|EET86831.1| transcriptional regulator, LysR family [Clostridium carboxidivorans P7] Length = 308 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 18/294 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +L+ F +AR G+ T+A+++LH++Q +S Q+ LE E+GIKL R R LT+ Sbjct: 1 MDIKQLKYFLTIAREGTLTNASKKLHIAQPPLSYQLKMLENEIGIKLIERTTRKSQLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + ++ +ETT EL++ + G L I TI ++L + +F LYP + Sbjct: 61 GKFLYNRSEKIVELVETTLKELKDFNKGIEGTLAIG-TIASTASILPEKINDFHKLYPKV 119 Query: 123 QIQLILDN--KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-RE 179 Q+ N + +D+ + +R P S +L + L HM A ++L + ++ Sbjct: 120 NFQIREGNSTRILDLLNNGIIQIGIIRCPFDSKNLKYKSLSKEHMLAAIHSNFLSSTKKK 179 Query: 180 PLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +S+ EL LI F +I N+ P I C + + S++ + Sbjct: 180 KISLIELKNLPLIIHVRFKSMIVDACSGLNF---------TPNIFC-ETDDVRSMLTWAT 229 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA++P V PN+ +++ P+ V + L N+ +NF+ Sbjct: 230 TGMGIAIVPKSTVNLIPNINLTYKEITNPNL-VTETFLVWLNNSYMSNTMKNFL 282 >gi|171056998|ref|YP_001789347.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774443|gb|ACB32582.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 322 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 24/296 (8%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GS + AA++L +S++SR+++ LE G +L R R LTLTE G + Sbjct: 2 LFSRVIDAGSLSAAAKRLEWPKSTVSRRLAALERHFGERLVQRSTRKLTLTEFGQGVLEH 61 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +V +++ Q +PSG+LR++ D+ +L L EF+ +P I +++ L Sbjct: 62 ARQVAAEVDDAQALAAHRQQRPSGRLRVSMPGDVATQVLGDILSEFMAAHPAIALEMDLS 121 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQEL 186 + +D+ + D A+R+ + + L R+L Y AP YL P + Sbjct: 122 PRRVDLIAENFDLAVRMGELQDEALLSARRLAAFTAGLYVAPSYLARHGPIVHPTDLARA 181 Query: 187 D-KHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 D L GD P + D +W G P ++ NS ++Q G G+ Sbjct: 182 DGLLLLGRGGDARPWQLHESAGDGHW-------TGLP-VTRATANSPELLIQLARAGRGV 233 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 + D LVR++ D PS T + +PE +L R +F+ A Sbjct: 234 TAVSDLYAAPAVRTGALVRVLPDWCLPSVTAWAVFPER-----RLMPARTRVFIDA 284 >gi|209546774|ref|YP_002278692.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538018|gb|ACI57952.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 296 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 1/177 (0%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS+T AA L +S S+IS+ + LE +G+ LF R R LTLT +G +LH T + Sbjct: 19 GSYTAAARSLSISPSAISKSVQRLEQNLGVALFTRTTRSLTLTNEGRELHERTLRLLRDA 78 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + + + PSG LRIAT++ +G +++ L EF LYP + I L L ++ +D+ Sbjct: 79 EEIEQVAKAARAAPSGNLRIATSLPIGLHVIAPALAEFRRLYPTVTIDLRLSDQMVDLIE 138 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194 + D A+R+ + + S L+ R+L + YA+P YL P EL++H + Sbjct: 139 EGIDLAVRIGE-LSDSRLLSRRLSPHRLCCYASPEYLAKRSIPKHPNELEEHETVNM 194 >gi|167582125|ref|ZP_02374999.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 9/295 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F YP + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRQQYPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGAPERP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ P+ W +P+ + L N + + G+GIAL Sbjct: 184 ADLLAHRCIVMGEQ-PR----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V + L R++ + + + ++ YP +++ F +++ ++ R Sbjct: 239 KSIWDVGPDIAAGRLRRVLPEFASSAAPLHAVYPSGRHLALRVRTFVDYLGVELR 293 >gi|282890944|ref|ZP_06299458.1| hypothetical protein pah_c032o023 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499159|gb|EFB41464.1| hypothetical protein pah_c032o023 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 12/291 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D++ F + + SF AA++L +S +++S+Q+ LE +G++L +R R L L+E G Sbjct: 4 FDQILYFMAIVEANSFAKAAKKLSISTAAVSKQMHLLEKHLGVELIHRTTRRLELSESGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ H++E + + +P G L + + Q+ + L EF+ YP + + Sbjct: 64 LYFEHCKKIVHEMEEAERLISNVRAEPRGNLFVVSGRHFAQHYILPFLCEFVQAYPQVCL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + D+ + D I P + +QRK+ T A+P+YL PL Sbjct: 124 NLELAERIPDLYQEKIDLVIGYSIPGPELA-VQRKIATTTYVLCASPNYLHKYGTPLKPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H IT P FN + + P+ L++N ++ Q + G GI Sbjct: 183 DLTNHIYITHSMRKPDDKLSFNDGSEIHLNPM-------LKLNDSNALAQCAIAGLGIIK 235 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + YIV + +LV I+ P +Y Y E+ K++ F +F+ Sbjct: 236 IHHYIVAEALEKGSLVEILASYKEPKTPIYLYYQESRHLQPKIRYFIDFVL 286 >gi|167571988|ref|ZP_02364862.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 317 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 119/262 (45%), Gaps = 18/262 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF R +RGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRQSRGLALTPKGGVLH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + L T +L P +L+++ L L +F L P ++L Sbjct: 73 EATATAFASLGRTLRQLG----APDAQLQVSCLPSFALQWLMPRLTDFHRLNPQTSVRLK 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID ++ D D AIR P +L L ++ A AAP YL P + Sbjct: 129 AEFHAIDQETMTADDIDVAIRW-DPFDYDALHVEPLFDEYLVAVAAPAYLDR-HPPRATA 186 Query: 185 E-----LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 E + H+ + D PK +E WL A V GE R + S + + G Sbjct: 187 EWVSTIVPLHDASAWPD-APKFVEWRTWLDAVVPAYAGELRGPEFNLASL--AIGAALAG 243 Query: 239 SGIALLPDYIVKDNPNLVRIME 260 G+A+ +V D R+++ Sbjct: 244 QGVAVCRHALVDDEIARGRLVD 265 >gi|116253894|ref|YP_769732.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|241206376|ref|YP_002977472.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115258542|emb|CAK09646.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|240860266|gb|ACS57933.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 297 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 144/298 (48%), Gaps = 28/298 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE E+G L R R ++TE G Sbjct: 6 RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121 +R S++ +++ ++E++ + G+LRI+ D+GQ+L+ +F PD Sbjct: 66 YRTASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFAKENPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCR 178 + +++ D++ +D+ + D AIR+ K ++ S +I RK+ +H A P +L+ + Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRITK-LEDSGMIARKISDFRIHICATPEFLERYPDLD 179 Query: 179 EPLSIQELD---KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P ++ + N T + ++ ++ V PI +VNS + ++ Sbjct: 180 HPTALSSVPFIVDTNARTQASIRFHNPDNTSFAVAVSGPI--------EVNSPHATLRAA 231 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G+A +PD+I + ++ LV + D +Y YP K++ F +++ Sbjct: 232 LAGIGVAFIPDFIARKPIESGELVTLFNDYTPTDRGIYAVYPHRRYLPAKVRIFVDYL 289 >gi|159186099|ref|NP_356363.2| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141233|gb|AAK89148.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 24/268 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG--- 63 ++ VF A SF+ A +L LS S++S+ ++ +E +G +L R R +TLT +G Sbjct: 7 EMEVFVSAAELQSFSAAGRRLKLSPSAVSKLVTRIEDRLGTRLLVRSTRMMTLTPEGEIY 66 Query: 64 -SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 ++ R+ +++ +T QI + P G LR+ ++ G+ L + FL LYP++ Sbjct: 67 LARARRILADIA---DTEQIVAAGGKLVPRGLLRVNASVGFGERFLLPLIPAFLELYPEV 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ + L + I + + D AIR + SSL RKL+ A+P Y+K P + Sbjct: 124 QLDISLTDGIIGLIEERTDIAIR-SGAMDDSSLKARKLLESRRVIIASPSYIKRHGMPQT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL------QVNSYLSIMQYCV 236 +L HN +F + + ++ + R G I L VNS + + + C+ Sbjct: 183 PADLAAHNCFSFN--FRRSLNEWPF-----RDPGSTEIYRLPVSGNSSVNSGMIMRRLCL 235 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMED 261 GSG+ + + V+ D LV ++ED Sbjct: 236 AGSGLGRVGQFHVQPDIDAGTLVPVLED 263 >gi|325527485|gb|EGD04816.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 313 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AA++L ++ + SR ++ LET + +L R R + LT+ G + Sbjct: 7 MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + E ++ KPSG+L + T GQ + + + YP + ++L Sbjct: 67 DRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQTYVVPAVVRYRQRYPSVAVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L DI + D +++L + S L+ ++L +H A+P YLK P ++++L Sbjct: 127 LSQHVPDIIDEGYDVSLQLSATELPDSGLVSQRLGEVHSVLCASPAYLKERGTPQTVRDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242 + H + L+ W +D P G E S QVN ++ G GI Sbjct: 187 EGHACL---QLVTPVFPRDRW--HLDGPDGRETFELPASDFQVNIADALGAALRAGLGIG 241 Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + LVR++ + TVY YP K++ F +F+ Sbjct: 242 SLPMSTALPALASGALVRVLPEYRLQKLTVYTLYPSRQYLDAKIRTFVDFL 292 >gi|73541641|ref|YP_296161.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72119054|gb|AAZ61317.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 304 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 16/270 (5%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 +A GS + AA ++ + I R+I LE +G+KL R R ++LT +GS + Sbjct: 1 MASRGSLSAAAGAEGVAPAIIGRRIDALEERLGVKLLIRTTRKISLTFEGSAFLEDCQRI 60 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 + L + + VK SG LR+ G+ + + F+ +PD+ I L L ++ + Sbjct: 61 LNDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPDVTITLDLSDRVV 120 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ + DCAIRL + SSL+ +L A+P YL P+ +EL HN + Sbjct: 121 DLVNEGFDCAIRLGD-LPDSSLVSIRLAETRRVVVASPDYLARAGTPVLPEELQGHNCLA 179 Query: 194 FGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 FG W+ TV +G ++ + ++C+ G G+A + Sbjct: 180 FG---ASANVQRGWVFQQEGHTVTVKVG----GDMECTDGAVLHEWCLQGHGLAWRSWWE 232 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPE 275 V + LV ++++ P ++ +P+ Sbjct: 233 VGSEIASGRLVTVLDEFQAPPIGIHAVFPQ 262 >gi|253687016|ref|YP_003016206.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753594|gb|ACT11670.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 139/296 (46%), Gaps = 10/296 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF + GSF+ AAE+L L ++++S I LE +G++L R R + +T++G Sbjct: 6 SMRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEGRLGVRLLQRTTRQVQITDEGRVY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++E + +P GK+R+ L ++++ L +F YP + + L Sbjct: 66 YERCLQLLAEIEEIDTLFTQQKQQPVGKVRVDMPHSLARDIVVPALGDFYARYPQVTLML 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ I++ + DC +R + +L R L ++ A+ YL P S+ +L Sbjct: 126 SANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQITCASADYLARYGVPRSLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+++ + L + + +++ +R I S LQVN + + G GI P Sbjct: 185 SGHHMVGYFSLRTEYLYPLEFMSGNER-ITRMLPSILQVNGADAYIASACAGLGIIQAPR 243 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 ++ ++ LV I+ ++ P+ +Y Y G+ A R +F++ D F Sbjct: 244 RGLRPFLESGELVEILPEIPPPAMPLYVMY-----APGRFLAPRIRVFIEWLDELF 294 >gi|190892400|ref|YP_001978942.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190697679|gb|ACE91764.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 14/250 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V +GSF + + LS+S+ + + LE +G +L R R L+LT++G + Sbjct: 11 IFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEGRLFYEH 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 V ++ + + S P G LR+ G+ ++ ++++LL +PDIQ+++ Sbjct: 71 GLGVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQVEVNFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ DI + D AIR+ +S L+ R + A+P YL + EP I +L Sbjct: 131 DRKADIVEEGFDLAIRIGAMPSASENRLLSRVIAADRARLCASPSYLADRGEPCHIDDLA 190 Query: 188 KHNLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F + +D W+ R S L+++S +I V G GIA Sbjct: 191 AHDCLVFSSRDQRQGWRFRGDDGAWVKAQGR-------SRLRLDSSEAIRDAAVAGLGIA 243 Query: 243 LLPDYIVKDN 252 LLP ++ + Sbjct: 244 LLPGFLAAGD 253 >gi|167564817|ref|ZP_02357733.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 317 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 115/254 (45%), Gaps = 18/254 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F R GSFT AA+ LHL+QS+IS+QI LE +G LF R +RGL LT +G LH Sbjct: 13 LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRQSRGLALTPKGGVLH 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 T+ + L T +L P +L+++ L L +F L P ++L Sbjct: 73 EATATAFASLGRTLRQLG----APDAQLQVSCLPSFALQWLMPRLTDFHRLNPQTSVRLK 128 Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ID ++ D D AIR P +L L ++ A AAP YL P + Sbjct: 129 AEFHAIDQETMTADDIDVAIRW-DPFDYDALHVEPLFDEYLVAVAAPAYLDR-HPPRATA 186 Query: 185 E-----LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 E + H+ + D PK +E WL A V GE R + S + + G Sbjct: 187 EWVSTIVPLHDASAWPD-APKFVEWRTWLDAVVPAYAGELRGPEFNLASL--AIGAALAG 243 Query: 239 SGIALLPDYIVKDN 252 G+A+ +V D Sbjct: 244 QGVAVCRHALVDDE 257 >gi|148553577|ref|YP_001261159.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498767|gb|ABQ67021.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 325 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 131/278 (47%), Gaps = 27/278 (9%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLT 60 + WD L+ F +AR+G T AA QL + +++ R+I LE +G + + R G LT Sbjct: 10 AMHWDDLQFFLSLARTGLLTIAARQLDVDATTVGRRIRRLERSLGGQTLFVQGRDGHVLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIEL--------QESSVKPSGKLRIATTIDLGQNLLQGNL 112 E G +L ++ET + E Q G LR++ + G ++ +L Sbjct: 70 EAGRRL-------LARVETIEREADAIAGGGDQADGEDVRGHLRVSASEGFGTWMVAHHL 122 Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172 EF +P + I L ++ +D S AD AI L +P Q LI +KL + YAA Sbjct: 123 GEFAGAHPHLSIDLAANSGFLDPSRREADVAILLARP-QRGPLITKKLSDYRLCLYAARA 181 Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLS 230 YL + +L H +I + +P + + N+L + P E R+ +N+ Sbjct: 182 YLDRHPPIAARSDLPAHRMIGY---VPDLLYSPELNYLDELG-PAVEARLRSSSINAQYR 237 Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDV-ITPSF 267 ++ GSGI +LP +I + LVR++ +V IT SF Sbjct: 238 MV---AAGSGIGVLPCFIGDRDGALVRVLPEVAITRSF 272 >gi|332307373|ref|YP_004435224.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174702|gb|AEE23956.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 292 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 16/289 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++L +F VA+ SFT AA+ L +S+ +S QI LE ++G LF R R ++LTE+G+ Sbjct: 8 FERLILFSEVAKQLSFTRAAQVLSISRGYLSEQIRKLEQDMGKHLFIRSTRNVSLTEEGT 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + + L + E++ + G LR+ Q L F YP I+I Sbjct: 68 QLLAGMNHIKRSLLELEREVRHDNDTLEGILRLTAPSQFAQRYLLDLCSAFQADYPAIRI 127 Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L D++ + D A R + P Q +++ +KL A+P YL P + Sbjct: 128 SLDCSYTTHDLNHNDFDLAFRATQTPPQ--NMVAKKLFDYRHMCCASPDYLAKNGTPNQL 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + + M+ + + P+ P + V L + ++ + G+GI L Sbjct: 186 SDLRNHACLR------QNMKAQWQFSGQNIPVDGP----IAVTDNLILKKHALAGNGIIL 235 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +P+Y+V LV ++ D + F ++ +P+ ++ + +LKAF F Sbjct: 236 VPEYLVDKEIQQGLLVPLLTDYLQNDFAIHLIHPQLIQQSARLKAFIAF 284 >gi|193070762|ref|ZP_03051697.1| transcriptional regulator, LysR family [Escherichia coli E110019] gi|256020972|ref|ZP_05434837.1| putative DNA-binding transcriptional regulator [Shigella sp. D9] gi|293433197|ref|ZP_06661625.1| HTH-type transcriptional regulator ycaN [Escherichia coli B088] gi|300816997|ref|ZP_07097216.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300902943|ref|ZP_07120887.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|301302493|ref|ZP_07208624.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|332282195|ref|ZP_08394608.1| transcriptional regulator [Shigella sp. D9] gi|192955955|gb|EDV86423.1| transcriptional regulator, LysR family [Escherichia coli E110019] gi|291324016|gb|EFE63438.1| HTH-type transcriptional regulator ycaN [Escherichia coli B088] gi|300405004|gb|EFJ88542.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300530349|gb|EFK51411.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|300842332|gb|EFK70092.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|315257940|gb|EFU37908.1| LysR substrate binding domain protein [Escherichia coli MS 85-1] gi|323175002|gb|EFZ60617.1| hypothetical protein ECLT68_0559 [Escherichia coli LT-68] gi|323185394|gb|EFZ70758.1| hypothetical protein ECOK1357_1347 [Escherichia coli 1357] gi|332104547|gb|EGJ07893.1| transcriptional regulator [Shigella sp. D9] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ED T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|170740666|ref|YP_001769321.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194940|gb|ACA16887.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 312 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 2/188 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F V +GS AA +L L+ S++SR ++ LE +G++L R R L LT +G Sbjct: 11 EMSAFLAVVAAGSLAGAARRLGLTPSAVSRIVARLEARLGVRLIVRTTRSLRLTAEGEVY 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + L+ T+ + +P G++R++ G+ + L +F L+P+I +++ Sbjct: 71 GRAARRILADLDETERAFADQG-RPRGRVRVSAATAHGRLAVVPLLADFAALHPEIVVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ D+ AD AIR P+ L R+L A+P YL PL +L Sbjct: 130 DLSDELADVLGGRADVAIRF-GPLADGPLTARRLGETGRTVVASPAYLARAGTPLVPADL 188 Query: 187 DKHNLITF 194 HN + F Sbjct: 189 AAHNCLEF 196 >gi|84386490|ref|ZP_00989517.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] gi|84378595|gb|EAP95451.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 13/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +A + + + A ++L LS + S IS LE +G++L +R R ++LTE+G Sbjct: 4 EHLKLFVRLASTHNISMAGQELGLSPAVASSHISKLEDNLGVRLVHRTTRKVSLTEEGEA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EV ++ + + P+G LR+ + G+ L L FL YP +++ Sbjct: 64 FLPHAEEVLSSVDAAKSAVGVGCDSPTGTLRVTASASFGRLHLVPALPGFLERYPGLKVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ D AIR+ + ++ S+LI RKL T A+P YL +P + ++ Sbjct: 124 LRLSDSMVDVVEGGFDIAIRISE-LKDSTLIARKLATDKRIVCASPDYLIKYGKPATPRD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L+ H I+ L NW T P + ++ ++ G GI + Sbjct: 183 LNDHQCISLIGL-------ENWTFNTESGPKTIKASGSFRADNGEALRDAASGGMGITVT 235 Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289 ++ + + LV+I+ED +T ++ YP K++AF ++ Sbjct: 236 SNWCAYEQLKSGQLVQILEDYPLTSEPAIWAVYPSTRLLAPKVRAFIDY 284 >gi|332307635|ref|YP_004435486.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174964|gb|AEE24218.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 294 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 6/246 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F VA+ SFT A+QL +S S+ I+ LE + G LF+R R +TLTE G Sbjct: 5 DGMRTFIAVAKQKSFTGGAKQLGISTKLASKYIAQLEQKHGALLFHRTTRSVTLTETGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E + +Q SG +R+ G L L FL +P I ++ Sbjct: 65 YFARCVPLLEQFEELEDVIQHRQSALSGTVRLTAPTAFGSTKLVDALAPFLAQHPKINVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ + I + D A+R P++ S+LI ++L+ + + +A+P YLK +P Sbjct: 125 LNLSDQYVAIIDEGVDVAVRF-GPLKDSTLIAKRLMDMRIVFFASPEYLKRNGKPSHPCA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + L + NW D +S NS ++ G GI + Sbjct: 184 LATHNCL----LQTSQNDPENWKFKEDGNTFTVNVSGDFASNSPRAVTHMASQGLGIGMG 239 Query: 245 PDYIVK 250 P Y+ + Sbjct: 240 PQYVTE 245 >gi|330965087|gb|EGH65347.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++ F + +GSF+ AAE+++ + S+ISR + LE +G++L R R L++T G + Sbjct: 5 NAIKAFRNLVEAGSFSSAAERMNTTHSTISRHLQQLENVLGVQLVNRTTRQLSVTRAGEQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +LE + + +S K LR++ + +G L L F YPDI+++ Sbjct: 65 YYLACIDILDRLEQAGLAVSHASQKLCATLRVSVPMVIGSLELANWLPAFQKRYPDIRLE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ D A+R+ + + +SLI R L + A+P Y+ P + + Sbjct: 125 LSCSDQFVDVVAGGFDLALRIAESLTDTSLIARLLAVSEVRLVASPGYIARHGLPRAAHD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H L+ F +WL T E RI L +S ++ + SGIA Sbjct: 185 LKHHQLLGFSG------GSADWLLTSTTGQSE-RIKPAGMLCSDSITALHAAALAHSGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+ +LV I+ D + YP+ + ++A +F+ Sbjct: 238 AFTEITVRQQLAQGHLVTILPDWTLGQRRYHALYPQTRHVSPAVRALIDFM 288 >gi|330941811|gb|EGH44557.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 305 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 9/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTVLIKQLEAHLGVQLLQRTTRQVSATPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAIGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + C +R + +L+ R L ++ A+ YL+ PL++Q Sbjct: 124 EIGMSDRPVDLIREGVGCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPLNLQ 182 Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 EL +H +I F KC + D E +C + VNS + C G G+ Sbjct: 183 ELVQHQVIEYFSTSTGKC---YGLEFMADGMGVEHASACSIAVNSADGYVAACEAGFGLI 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V + LV ++ P + YP + + +++ F +++ Sbjct: 240 QVPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWL 290 >gi|320324619|gb|EFW80696.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328991|gb|EFW84990.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330880707|gb|EGH14856.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 305 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/292 (22%), Positives = 135/292 (46%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFAKAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +++ + DC +R + +L+ R L ++ A+ YL+ PL++ Sbjct: 124 EIGMSDRPVELIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPLNLP 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H +I + ++A VD+ + + VNS + C G G+ Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMADGVEVDQALA----CSISVNSADGYVAACEAGFGL 238 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V LV ++ P + YP + + +++ F +++ Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290 >gi|255588015|ref|XP_002534475.1| HTH-type transcriptional activator aaeR, putative [Ricinus communis] gi|223525223|gb|EEF27905.1| HTH-type transcriptional activator aaeR, putative [Ricinus communis] Length = 319 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 1/185 (0%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A GS++ AA +L +S S++S+ I+ LE +GI LF R R L LT +G L Sbjct: 14 AFAKAAALGSYSAAARELGVSPSAVSKSIARLERHLGIPLFIRTTRSLRLTHEGEALQER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + E Q + PSG +R+A +G ++L L F +P + + L + Sbjct: 74 AMRLLQEAEEIQQAAISTRNGPSGVIRVAAPYPIGVHVLGPALTRFRERHPGLMVDLRIR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ + D AIR+ I S LI R+L + A+AAP YL P +EL H Sbjct: 134 DQMADLISEGIDIAIRVGD-IPDSRLISRRLAPHRVCAFAAPGYLARKGTPRHPEELSGH 192 Query: 190 NLITF 194 + + F Sbjct: 193 DCVNF 197 >gi|49083700|gb|AAT51112.1| PA2838 [synthetic construct] Length = 324 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V GSFT AA+ L S +++SRQ++GLE + +L R+ R + +TE G + + Sbjct: 7 IRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ++++S SG+LR+ +LG L L ++L +PD+ + L Sbjct: 67 GHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + + D I L + + S+L+ R L + AAP YL P + ++L Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244 +H + P C + W +R GE + L+VN + G G+ LL Sbjct: 187 RHRCLNVA--APSCPQ--GWAFVGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240 Query: 245 PDYIV 249 P ++ Sbjct: 241 PGFVA 245 >gi|33597515|ref|NP_885158.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33573943|emb|CAE38261.1| probable LysR family transcriptional regulator [Bordetella parapertussis] Length = 295 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 6/268 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 + V+A + SFT AA++L +S+S IS ++ LE E+G+ L R R + TE G+ L Sbjct: 1 MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVRPTEAGALLVER 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + E++ + P G+LR+ + LG+ L L +PDI +++ L Sbjct: 61 ARPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +++ + D A+R + S + + ++L H A+P YL P EL +H Sbjct: 121 DRFVNLRQEGYDFALRHADQV-SDAYVSKRLCATRAHLVASPAYLARHGRPAHPSELARH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + F + + CL VN+ + + G GIA++PD+ + Sbjct: 180 RCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESAAHGLGIAMVPDFSL 239 Query: 250 KDNPNLVRIMEDVITPSFTVYFCYPEAL 277 D +L + + P + Y + +L Sbjct: 240 GDCADL-----EPVLPQWDCYAGFGRSL 262 >gi|13474286|ref|NP_105854.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025038|dbj|BAB51640.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 306 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 3/187 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF V G+ + A + +S + S +I LE +G++LF R R L TE G+ Sbjct: 5 DNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V + + + S +P G +R+ + LG+ L+ + +F YPDI+++ Sbjct: 65 FYSGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + ++DI + D A RL I+ SSL R ++ AAP YL+ EP QE Sbjct: 125 LRLSDHNVDIMKEGIDVAFRL-GIIEDSSLRMRGIMECERVLVAAPKYLEARGEPAEPQE 183 Query: 186 L--DKHN 190 L KH+ Sbjct: 184 LIGKKHD 190 >gi|330875259|gb|EGH09408.1| LysR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 134/287 (46%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +V + SFT A ++L +S S + + I LE +G++LF+R+ R + LT +GS Sbjct: 9 LFVLVTETRSFTLAGKRLGISSSGVGKSIGRLEESLGVRLFHRNTRSIALTLEGSIFLDR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +L+ Q+EL + P G+LRI+ + G L+ + +F+ YPDI++ + Sbjct: 69 CRRILSELDAAQLELSNARDLPKGRLRISVPLVFG--LVMPVVIQFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R +P S L+ +++ + + +P Y R L Q D Sbjct: 127 DRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCVVGSPDYF--ARHGLPEQPADLV 183 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 N P + +W + R G Q N+ +++ G GI LPD Sbjct: 184 NHACLQHKFPSTGKFEHW--PLRREAGSEDFELPQTMVCNTTEVLVEVARAGLGITCLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ LV I+ D + + +P + + +L+ F +F+ Sbjct: 242 FMLASAIRKGELVPILADYTLHTGSFRLFWPSSKHLSVRLRVFIDFM 288 >gi|260428435|ref|ZP_05782414.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260422927|gb|EEX16178.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 11/288 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +WD +R+F V R S + A L + +++ R+++ LE +G LF + +G LT Sbjct: 1 MRENWDDMRIFLAVGRGDSLSSAGRVLRMDPATVGRRVARLEETLGQTLFAKSPQGYALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G++L R E L ++ + SG++RI LL E P Sbjct: 61 EAGTRLLRHAEEAEQALGLGAQAVRGAGEGMSGQIRIGAPDGCANFLLPQVCAEIGAQNP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D++IQ++ + +++S AD AI + P + L+ +KL +H A+ YL Sbjct: 121 DLEIQIVALPRIVNLSRREADLAIGVSAPT-AGRLVVQKLADYKLHLAASEDYLARHPPI 179 Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 S +L H ++ + IP + ++ ++LA +G R+ L NS + G Sbjct: 180 RSRTDLKGHRIVGY---IPDMIFDKELDYLAD----LGLDRVG-LASNSVSVQFHWLRQG 231 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +G+ ++ D+ + L RI+ + + Y + G+L F Sbjct: 232 AGVGIVHDFALPAASGLTRILPAEVELIRSFYLVRHADDRRVGRLNTF 279 >gi|26990316|ref|NP_745741.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24985271|gb|AAN69205.1|AE016555_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 306 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 8/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + GSF A QL + +S+++S LET +GI+L R R L T++G + Sbjct: 10 DELATLLALYEQGSFAAAGRQLERHPTVLSKRLSALETRLGIRLVERSTRQLRFTDEGER 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + + E E + G+LR+A +G+ L G L +F+L YP + ++ Sbjct: 70 LVAKVLEASRLIAEAEEEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVIVE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +D+ + D AIR+ + + + L+ KL A+P YL EP ++ Sbjct: 130 TEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGEPAQPED 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HN + F L + ++ L + R L+ N ++++ G GI Sbjct: 189 LAAHNCLGFNGL--RSFPEWR-LMSDTRQTSVKVAGSLRSNDNEALLEAARRGVGIVAGG 245 Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+++ ++ LVR++ + + +Y P A NT + F+ ++ Sbjct: 246 DWLMGEDLASGCLVRVLAQWQLDKAAGIYLVRPTARLNTAAMGVFKAWL 294 >gi|167621768|ref|YP_001676553.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167351509|gb|ABZ74239.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 305 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 14/297 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F AA + +S +SR+++ LE ++G++L R R +TE G Sbjct: 3 DLNDLMFFGDVVTHGGFAAAARATGVPKSKLSRRVAVLEEQLGVRLIERSTRRFVVTEIG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 H + + E + ES +P G +R + + Q L L F LYP + Sbjct: 63 QAFHARCRAMVLEAEGAMALVAESRGEPRGLVRFSCPPGILQA-LSPLLPAFFSLYPGAK 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++ N +++ D A+R+R I + +SL+ R L + H AAP K + Sbjct: 122 LSILSTNAPVNLIDQRIDVALRVRSSIDKDASLMTRGLASSHRILVAAPDVAKRLDD-AP 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I+ L + +TF D P+ V +PR++C ++ +++ V G+G+A Sbjct: 181 IEALGQAPTLTFMDQ-PQSWGLTRGDGAVRTIELQPRLTCGEI---FTLINAAVGGAGVA 236 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKAR 295 LLPD+ + + LVR+ D P ++Y + G+ R FI +L AR Sbjct: 237 LLPDHSCRRELASGALVRLWPDWSGPKSSIYLVF---TTRRGQPPVVRVFIDYLAAR 290 >gi|157377188|ref|YP_001475788.1| LysR family substrate binding transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319562|gb|ABV38660.1| substrate-binding transcriptional regulator, LysR family [Shewanella sediminis HAW-EB3] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 17/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V+A+ GSFT AAE L S+S +S+Q+S LE +G+ L R R LTEQG + Sbjct: 10 IRAFTVIAKQGSFTQAAEVLGCSRSHLSKQLSQLERFLGVSLITRTTRAQRLTEQGQQFF 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +++ G++ I +G+ ++ + +F+ LYPDI + L Sbjct: 70 EQCQAALETIDGAVASTVDNARHLQGQININCVGGVIGEEIVTALVNDFIALYPDISVNL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ +D D R+ + ++ S ++ RKL++I A+P YL+ P + L Sbjct: 130 DFSSQRVDLVVDEFDLVFRMGE-LEDSGIVARKLMSIENMTMASPQYLERRGYPDHPKAL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 H IT G + +WL + P + ++ + + ++ + G+GI Sbjct: 189 KDHLCIT-GSID-------HWLFEQESNPNNKVEVAIKGGFRCKNGRAMKASALAGNGIV 240 Query: 243 LLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 LP Y ++ + LV + E+ Y Y + +LKAF +F Sbjct: 241 RLPKLYCPQELASGELVSVFEEWRVADTPFYLLYHKDRFQPARLKAFVSF 290 >gi|254250250|ref|ZP_04943570.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124876751|gb|EAY66741.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 328 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 120/285 (42%), Gaps = 6/285 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +W++ R F V GS + AA L ++Q + R ++ LE G LF R GL T Sbjct: 31 IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 90 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E L + + G +RI+ + + +L L + +P Sbjct: 91 EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPMLAQLRRDHP 150 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+L+ ++ D+ AD A+R+ P Q +L+ R++ I + YA YL + P Sbjct: 151 GLVIELVPTDRIQDVLKREADIAVRMAPPAQ-DALVARRVGEIEVGLYARDDYLAHHGAP 209 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +I L H LI F + P F A P+ + L+ +S L+ + G G Sbjct: 210 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 264 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 I + K N LVR++ D + + E L+ + + +A Sbjct: 265 IGFCQSALAKRNARLVRVLPDALGMRLETWVVMHEDLRTSPRCRA 309 >gi|70729151|ref|YP_258887.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68343450|gb|AAY91056.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 322 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 5/192 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +GSF+ AA QL S S++SR IS LE + +L R R L L++ G ++ Sbjct: 17 EMAIFVRVVETGSFSEAARQLGSSPSAVSRSISRLEKALATRLLQRTTRKLRLSDGGEEV 76 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + SE+ + + + + G +R++ +G+ ++ ++ EFL YP + ++L Sbjct: 77 FKRCSEMVSAARSVMEVSGQFTHEAEGVVRVSVPKAVGRFVVHPHMPEFLRRYPQVDVEL 136 Query: 127 ILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + +++D+D+ D D AIR+ R P LI R+L+ I A P YL P Q Sbjct: 137 LHEDRDVDLIDDNVDLAIRITDRPP---PGLIGRQLLRIDHLLCATPQYLAEHGTPAHPQ 193 Query: 185 ELDKHNLITFGD 196 +L +H+ I G+ Sbjct: 194 DLRQHSCIYLGE 205 >gi|319791811|ref|YP_004153451.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594274|gb|ADU35340.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 352 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 22/277 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + D+LR+F VA SF+ AA+QL L+++ +S + LE +G +L R R + LTE Sbjct: 1 MNTDELRIFSRVAELASFSRAADQLGLTRARVSVAVQHLEKRLGTRLLQRTTRSVRLTED 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + E + ++ +G+LRI L ++L+ L EFL +P + Sbjct: 61 GERFLDRCRDYLSEGEQLATMFRANTGGLTGRLRIDLPATLARDLVIPRLPEFLARHPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I + ++ +D+ + DC +R+ + S LI R L + M A+P YL+ P + Sbjct: 121 EIGISTTDRRVDLVNEGFDCVLRV-GVLGDSELIARPLGFMRMANAASPAYLQAHGTPHT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLG 238 + EL +H ++ F + D W D G RI + + VN + V G Sbjct: 180 LAELAQHRIVHFAQTL--SPNDAGW-EYFDAAQGRYRIKPVRAIVTVNGTDAYNAAAVAG 236 Query: 239 SGI------ALLPDYIVKDNPNLVRIMEDVITPSFTV 269 G+ LLP + +LV +M P+FT Sbjct: 237 LGLIQAPVGGLLPCFAAG---SLVEVM-----PAFTA 265 >gi|167561268|ref|ZP_02354184.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 1/186 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + + Sbjct: 7 MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + +SV P G+LR+ + G + + + YPD+ +++ Sbjct: 67 ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYPDVTVEIT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL P ++ +L Sbjct: 127 LSDRIVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTVADL 186 Query: 187 DKHNLI 192 +HN+I Sbjct: 187 QRHNII 192 >gi|90411752|ref|ZP_01219761.1| hypothetical transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90327314|gb|EAS43678.1| hypothetical transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 306 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 9/289 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF + + SFT AA+ L +S++ +S+QI LE +G++L R R LTE G Sbjct: 7 QMVVFNALTKQQSFTRAAQLLDISRTQVSKQIQQLEERLGVQLVQRTTRSFALTEAGRSF 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V ++ + EL + G LR+ N + + EF LYP + +++ Sbjct: 67 SVHCANVVGEINEAESELLSETDSLQGALRVGIAQSFASNHIAPFISEFHDLYPQLDLEM 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +D+ + D I + R L+ + A+P YL P +L Sbjct: 127 SLFDYRVDLIAEQLDLWIGFMDS-PPEGFVARHLIDCNFVLAASPAYLAKHGVPYHPNDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 HN IT+ + +D W + + ++ +V+S SI + G+GI L Sbjct: 186 KDHNCITY---FSRERKDNVWSFRKEEESHQIKVKGNYRVDSADSIRDATLTGNGIGYLA 242 Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y++KD L+R+M D +T +Y YP K++ F +FI Sbjct: 243 TYLLKDELQKGQLIRLMPDWDLTQYMPLYAVYPRHKYLPQKVQVFIDFI 291 >gi|56475859|ref|YP_157448.1| transcription regulator protein [Aromatoleum aromaticum EbN1] gi|56311902|emb|CAI06547.1| transcription regulator protein [Aromatoleum aromaticum EbN1] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 21/274 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA GS + AA ++ + I R++ LE +G+KL R R + LT +G+ Sbjct: 10 FVSVASRGSLSAAARAEGVTPAIIGRRLDALEQRLGVKLLTRTTRSIALTFEGAAFLEDC 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + H L + + VK SG +R++ G+ + +++FL + P++ + L + Sbjct: 70 QRILHDLANAEASVSLGGVKASGHIRVSAPAGFGRIHVAPLMQDFLEMNPEVSCMMDLSD 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + DCAIR+ + + SSL+ +L A+P YL P+ Q+L H Sbjct: 130 RVVDLVNEGIDCAIRIGE-LPDSSLVSIRLAENRRVVVASPAYLARFGTPVVPQDLSGHK 188 Query: 191 LITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 ++ G + WL T+ +G R C N + ++ + G G+A Sbjct: 189 CLSLG-------QQRGWLFRDEDGETITLKVG-GRFEC---NDGAVLHEWALAGHGLAWR 237 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + V + LV +++ P+ +Y +P+ Sbjct: 238 SLWEVDADLRAGRLVSVLDTFAAPTTGIYAVFPQ 271 >gi|325521493|gb|EGD00309.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 284 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ LR F VA+SGS + AA +L + +++SR++S LE+E+ ++L R R LT Sbjct: 2 FDWENLRCFVAVAQSGSLSAAARRLKVDHATVSRRVSALESELKVRLLDRLPRACRLTAA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLL 118 G+++ K+E ++ ++ G + ++ L N +L F L Sbjct: 62 GTQV----LAFAQKMEENAFAIERLALAEHLPMHGTVTVSVPPVLASNFFANHLHAFARL 117 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P I++ L+ + + + AD AIRL +P + S + RKL + YA+ Y + Sbjct: 118 HPGIRLALVSQVQSVSLGRREADIAIRLFRPEEPQS-VTRKLGVMAFALYASRDY-AHAS 175 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +P D+ I + D M WL ++ RI+C +V+ + G Sbjct: 176 QP------DRWAFIAY-DAQYAEMPHQKWLQSI---ADGRRIAC-EVSDITTQQAAARTG 224 Query: 239 SGIALLPDYIVKDNPNLVRIMED 261 G+A LP +I ++P L R+ D Sbjct: 225 IGVAGLPVFIGDNDPALQRLPFD 247 >gi|331667720|ref|ZP_08368584.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] gi|331065305|gb|EGI37200.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] Length = 257 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWKLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245 >gi|309782827|ref|ZP_07677547.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308918251|gb|EFP63928.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 306 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 12/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V GS + AAE + +S+ IS+ ++ LE + +L R R L+LTE G+ Sbjct: 9 IFVQVVERGSLSAAAEAMGMSRGVISKALARLEARLQTRLLQRTTRRLSLTEAGAAFFEK 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + E ++ + + + G LR++ LL L F YP +QI L ++ Sbjct: 69 SREGLALVDAAEQAVSALRDEARGTLRVSAPASFAVTLLAPLLGAFQARYPAVQIDLDMN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ D AIR+ + SSL+ R+L Y AP Y + P S ++L H Sbjct: 129 DRYADLVAGRIDVAIRI-GMLGDSSLVARRLANCAHAIYGAPSYFRERGIPQSPEDLRNH 187 Query: 190 NLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 N + + + +W+ A R I S L NS L + + G G++L P Sbjct: 188 NCLVYANYDGP----HDWVLTDAAGHRHIAHVAGSMLANNS-LVLREAARSGLGVSLGPA 242 Query: 247 YIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+V+D+ R ++ D ++ + + + K++AF +F+ Sbjct: 243 YLVRDDVAAGRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFL 289 >gi|331667276|ref|ZP_08368141.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] gi|331065632|gb|EGI37525.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYEQLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ED T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|167915666|ref|ZP_02502757.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] Length = 306 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++ +S + LE E+G+ L R R + LTE G + Sbjct: 5 DRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF+ +P ++++ Sbjct: 65 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 184 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P L ++ + + G Sbjct: 185 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKP---YLIADNASVLRAFAQQG 241 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 G+ALLP+++V+D+ +++ + F VY YP A K++A+ +FI Sbjct: 242 DGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 296 >gi|322832357|ref|YP_004212384.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321167558|gb|ADW73257.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 22/303 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR GS T AA +L ++ S+S+ + LE +G LF R R + LT+ G Sbjct: 6 YNQIRIFQSIAREGSITAAARKLEITPPSVSKALKLLEQHIGHPLFVRTTRRIELTDAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + TS LE+ +++ + +PSG +RI + +L+ + EF YP IQ+ Sbjct: 66 QLLQQTSRAVASLESAVESIKDLNQEPSGLVRITLSRFAYLLILKPFMAEFCQSYPGIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + + +++ + D IR ++ S + + + YA+ YL P Sbjct: 126 EISVYDGTVNMVDERFDLGIRFGDILEESVVARPLMKPFREGLYASAAYLAEHGTPKLPA 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV--- 236 +L +H LI + L+P +ED TV+ P G+ +++ + +M + Sbjct: 186 DLHQHQLIGYRFITNNRLLPLMLEDKGQQLTVEMP-GQ------LISNDIDVMADGIRSG 238 Query: 237 LGSGIALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK---LKAFRNFIFL 292 LG G P Y ++ D + +M VY Y LKNTGK +KA +F+ + Sbjct: 239 LGIGRLFEPVYELQPDKEQFIPVMMPYWKTYPPVYLYY---LKNTGKAKRVKALIDFLMM 295 Query: 293 KAR 295 K + Sbjct: 296 KTK 298 >gi|260464022|ref|ZP_05812217.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259030193|gb|EEW31474.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 296 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 143/300 (47%), Gaps = 19/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F V +GSFT AAE+L ++++ +S+Q++ LE E+ L R R L TE G Sbjct: 7 NRLAYFATVIDAGSFTRAAERLGITKAVVSQQVARLEAELQTTLLVRTTRRLEPTEAGRL 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 LH + +E E+ E + + +G LR++ + D G +L F +P ++ Sbjct: 67 LHARCVMILRDVEEAVAEVAEGNTEVAGVLRVSASNDYGAIVLAPIAARFRQEFPACGVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSI 183 L + + ID+ D +IR+ ++ SSL R++ T A+ + EP Sbjct: 127 LFISDAIIDLIGSKMDLSIRV-GWLEDSSLQARRIGTFRQILVASRDFAAKVTVDEP--- 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGS 239 ++L L+ L + F W + R EPR ++ +NS ++++ + G Sbjct: 183 EDLASLPLVANSVL----RKPFTW--SFTRGDVEPRTVTMRETFSINSTPAVLEATLAGG 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+A+LPDY++ D LV ++ D PS ++ YP A K+ F + + + R+ Sbjct: 237 GLAVLPDYLIADYLSQGRLVHMLSDWALPSGGIHVVYPAARFRPQKVTRFVSMLMEQIRE 296 >gi|17548051|ref|NP_521453.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430357|emb|CAD17122.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 126/283 (44%), Gaps = 20/283 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q + R + LE +G LF R +GL+ TE Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L R +E LE+T L ++ G +RI + + +L L + YP Sbjct: 68 AL-RPYAE---SLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L+ N+ D+ AD A+R+++P Q L+ R + I + +A YL+ P Sbjct: 124 GLILELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLVARHIGGIELGVHAHRRYLERRGTP 182 Query: 181 LSIQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++ +L H LI + I W+ DR L+ +S L+ + Sbjct: 183 ATLDDLAGHALIGYDKETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRA 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 G GI + + + +P+LVR+ D + P + E L+ + Sbjct: 235 GFGIGICQVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRES 277 >gi|157161263|ref|YP_001458581.1| LysR family transcriptional regulator [Escherichia coli HS] gi|170019856|ref|YP_001724810.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739] gi|188492998|ref|ZP_03000268.1| transcriptional regulator, LysR family [Escherichia coli 53638] gi|300917631|ref|ZP_07134282.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300951404|ref|ZP_07165246.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300956701|ref|ZP_07168975.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|301645691|ref|ZP_07245618.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|312969835|ref|ZP_07784018.1| uncharacterized HTH-type transcriptional regulator yeaT [Escherichia coli 1827-70] gi|157066943|gb|ABV06198.1| transcriptional regulator, LysR family [Escherichia coli HS] gi|169754784|gb|ACA77483.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739] gi|188488197|gb|EDU63300.1| transcriptional regulator, LysR family [Escherichia coli 53638] gi|300316501|gb|EFJ66285.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|300415148|gb|EFJ98458.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300449394|gb|EFK13014.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|301076063|gb|EFK90869.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|309702021|emb|CBJ01335.1| LysR-family transcriptional regulator [Escherichia coli ETEC H10407] gi|310338120|gb|EFQ03209.1| uncharacterized HTH-type transcriptional regulator yeaT [Escherichia coli 1827-70] gi|332343524|gb|AEE56858.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 307 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L + +I + F W L + P L N + Q+C+ G GIAL Sbjct: 187 LSALPCL----VIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIAL 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 243 RSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|262278718|ref|ZP_06056503.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259069|gb|EEY77802.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 130/262 (49%), Gaps = 16/262 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A ++ S++S+ I+ LE +G++L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACDMTPSAVSKLIARLEKRLGVRLLNRSTRQFQLTSEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ +L+ EL++S P G++RI T+ + L + F YP I+ Sbjct: 71 YEQGLQILSELD----ELEQSVTANHTPKGRIRIHTSFSYWTHFLLPCISLFNQRYPQIE 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ L ++ I++ D AIR P++SS+L+ R L + H +P Y+ C P Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTQKHYVCSPTYITQCGCPQHP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL +H L+ + ++ WL ++ I L+VN +I+Q + +GIA Sbjct: 186 DELSEHQLLD----VSYQRQNKTWLFQKENQEITLVPTQVLRVNHGEAILQLALADAGIA 241 Query: 243 LLPDYIVK---DNPNLVRIMED 261 L ++ V+ + L++I+ED Sbjct: 242 QLNEFQVRKALEQKQLIKILED 263 >gi|257484260|ref|ZP_05638301.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008330|gb|EGH88386.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 131/289 (45%), Gaps = 22/289 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA SFT AA +L SQS++S +I LE +G++L R R ++ T G +L Sbjct: 9 LMAFVAVAEERSFTRAAGRLGTSQSALSHKIRRLEARLGVRLLTRTTRSVSPTAAGERLL 68 Query: 68 RVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + T Q+E L + KP+G +RI T + + +L L +L YPDI++++ Sbjct: 69 ETLKPALADI-TAQLESLTDVRDKPAGSIRITTADHVAETILWPALNRWLPKYPDIEVEI 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIHMHAYAAPHYLKNCREP 180 +DN +DI + D IRL + + + ++R ++ +P YL P Sbjct: 128 TVDNGFVDIVAERFDAGIRLGENLDKDMIALPIGPMERCVIV------GSPSYLAKYPVP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 +L H + P W D + R+S + N I++ V G Sbjct: 182 THPDQLVNH--LCINRRFPSLNGKSAWHFEKDGQATQVRVSGQVAFNRPEMILEAAVAGY 239 Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLK 284 G+A L D V + LVR+++D P+F Y+ YP +NT + Sbjct: 240 GLACLLDSQVIHQVEAGRLVRVLDD-WCPAFPGYYLYYPSRRQNTSAFQ 287 >gi|206560893|ref|YP_002231658.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198036935|emb|CAR52844.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 308 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 22/290 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF GS AA + LS S + +S +E ++ ++L R R LTLT+ G + Sbjct: 7 MAVFVSAVEEGSLVSAARRFGLSPSMAGKHVSAIEEQLKVRLLQRSTRKLTLTDVGRSYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + E E Q++ G LR+A G L + +L YPD+ I+ Sbjct: 67 TRCKRLLEEYEDANREAQDAQQSVHGILRVAAPTTFGALHLGRVVSSYLAEYPDVSIETT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D D AIR+ + +Q S L+ R+L + M AAP +L EP ++++L Sbjct: 127 LSDRYVDLLADGIDVAIRIGR-LQDSDLVARRLASCRMMFCAAPSFLARHGEPKTVEQLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + + F + +W T +D I L N+ ++ + G+ Sbjct: 186 QAPRLAFSQAVSAG----DWSVTDANGQTHHIDGAIR------LAANNMQMLLAAALTGA 235 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ P ++ + + L ++ D T ++ YP + K++ F Sbjct: 236 GVVYGPSFVFEQSIASGALRVLLPDHKTTDLAIHAIYPSKRHVSLKVRRF 285 >gi|167589471|ref|ZP_02381859.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 313 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AA++L ++ + SR ++ LET + +L R R + LT+ G + Sbjct: 7 MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V ++ + E ++ KPSG+L + T GQ + + + YP + ++L Sbjct: 67 DRCQRVLAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRERYPSVAVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L DI + D +++L + S L+ ++L T+H A+P YL+ P +I++L Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGTVHSVLCASPAYLREHGTPQTIKDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242 + H + ++ W +D P G E + QVN ++ G GI Sbjct: 187 EAHACL---QIVTPVFPRDRW--HLDGPDGRETFELPLPDFQVNVADALGAALRAGLGIG 241 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + LVR++ + TVY YP K++ F F+ Sbjct: 242 SLPMSTAVPALRSGALVRVLPEYRLQKLTVYTLYPSRQYLDAKIRTFVEFL 292 >gi|167568487|ref|ZP_02361361.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 1/186 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSF AAE++ +S + S+ + LE ++G +L +R R + TE G + + Sbjct: 7 MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + +SV P G+LR+ + G + + + YPD+ +++ Sbjct: 67 ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYPDVTVEIT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +++ + D A+R ++SSSL+ R++ T H+ A+P YL P ++ +L Sbjct: 127 LSDRIVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTVADL 186 Query: 187 DKHNLI 192 +HN+I Sbjct: 187 QRHNII 192 >gi|160899021|ref|YP_001564603.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364605|gb|ABX36218.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 310 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 1/192 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ +F V +GSF+ AA QL + S+ SR ++ LE +G++L R R L L+E G Sbjct: 10 FGEMAIFVKVVDTGSFSEAARQLGSTPSATSRGVARLERALGLRLLERTTRKLRLSEAGR 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++H ++ + +P G +RI+ +G+ ++ ++ +FL LYP++ + Sbjct: 70 EVHARCLDMVGAAQAVMAASLRQDAQPRGLVRISVPKAVGRTVVHPHMPDFLALYPEVDV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 Q+ L+++ +D+ D D AIR+ L+ R L+ I A+P YL P+ Sbjct: 130 QMRLEDRYMDLIDDPVDLAIRITN-HPPPGLMGRHLMDIDHLLCASPQYLARHGTPVHPL 188 Query: 185 ELDKHNLITFGD 196 EL H+ I G+ Sbjct: 189 ELKAHSCIYLGE 200 >gi|70729631|ref|YP_259370.1| LysR substrate binding domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68343930|gb|AAY91536.1| LysR substrate binding domain protein [Pseudomonas fluorescens Pf-5] Length = 314 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 113/259 (43%), Gaps = 10/259 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F V GSF+ A + L+ SSISRQI +E +G +L YRH R ++ TE G L Sbjct: 12 LRLFIAVLDQGSFSAVARREGLAPSSISRQIQLMEQALGQQLLYRHTRAVSPTEAGRLLG 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E + LQE +P+G +RI + GQ L L E YP +Q+ + Sbjct: 72 HHARRVLAQWEEAEQALQEQQDEPAGLVRINAPVVFGQRHLSPWLGELHGRYPKLQLDIQ 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ ID D D R+ ++ SS+ R L A+P YL P ++L Sbjct: 132 QTDRYIDPLQDGTDLLFRIGT-LEDSSMQARLLAPQRYRVAASPAYLARHGTPQHPEQLQ 190 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLP 245 +H + + + W R P L N ++ Q G G+ + P Sbjct: 191 RHQCLAYKGETGQQ----RWFFRQGRADWTPYSVKGPLTGNHADTLTQAAEQGLGLVMFP 246 Query: 246 DYIVKD---NPNLVRIMED 261 +++ + LV + ED Sbjct: 247 SWLIGEALHQGRLVALFED 265 >gi|194434385|ref|ZP_03066648.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012] gi|194417369|gb|EDX33475.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012] gi|332095957|gb|EGJ00964.1| hypothetical protein SD15574_1256 [Shigella dysenteriae 155-74] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAAQVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ED T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|118496716|ref|YP_897766.1| LysR family transcriptional regulator [Francisella tularensis subsp. novicida U112] gi|194324023|ref|ZP_03057798.1| transcriptional regulator, MarR family [Francisella tularensis subsp. novicida FTE] gi|118422622|gb|ABK89012.1| transcriptional regulator, LysR family [Francisella novicida U112] gi|194321920|gb|EDX19403.1| transcriptional regulator, MarR family [Francisella tularensis subsp. novicida FTE] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 141/291 (48%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 12 FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 72 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + ++ RK+ T A+P Y+ P +I + Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242 L HN I + L + + P+ S + N+ + ++ CVL GIA Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVKD N L+ +++D +Y YP+ K+K F N + Sbjct: 241 QFHEYIVKDEIRNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291 >gi|120597550|ref|YP_962124.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1] gi|120557643|gb|ABM23570.1| transcriptional regulator [Shewanella sp. W3-18-1] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 15/296 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AA+ L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 IRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + + G +RIAT I LGQ+ L + F+ L+P + IQL Sbjct: 67 QYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQLA 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI R+L+ I AAP YL N PL+ Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMMIDAVVCAAPTYLANT-SPLN---- 179 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + +L+ L+ +++L + + L+ N ++ + G GI LP Sbjct: 180 EPIDLLAHNCLVHTAQHSWHFLKEKQSEVIKV-TGNLKANDMGVLVSAALRGHGIVRLPC 238 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + L ++ D TP T++ Y L + + R FI A+ W+ Sbjct: 239 DLANQYLASGQLQEVLPDFTTPGQTLWAVY---LSRSYQQMLVRAFIDFTAQQWQL 291 >gi|146294309|ref|YP_001184733.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145565999|gb|ABP76934.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 15/296 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AA+ L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 IRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + + G +RIAT I LGQ+ L + F+ L+P + IQL Sbjct: 67 QYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQLA 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI R+L+ I AAP YL N PL+ Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMMIDAVVCAAPTYLANT-SPLN---- 179 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + +L+T L+ +++L + + L+ N ++ + G GI LP Sbjct: 180 EPIDLLTHNCLVHTAQHSWHFLKEKQSEVIKV-TGNLKANDMGVLVSAALRGHGIVRLPC 238 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + L ++ D P T++ Y L + + R FI A+ W+ Sbjct: 239 DLANQYLASGQLQEVLPDFTAPGQTLWAVY---LSRSYQQMLVRAFIDFTAQQWQL 291 >gi|330977894|gb|EGH77797.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 208 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 92/189 (48%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L ++ S++S + GLE +G++L R R + TE G + Sbjct: 7 NDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ L E KP+G +RI + D + +++ L FL YPDIQI+ Sbjct: 67 LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D +I + D IRL + I + R + +P Y + PL Q+ Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERPPVPLQPQD 186 Query: 186 LDKHNLITF 194 L + I Sbjct: 187 LTQQTCINI 195 >gi|188993307|ref|YP_001905317.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris str. B100] gi|167735067|emb|CAP53279.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. campestris] Length = 308 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 14/296 (4%) Query: 1 MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58 MS D W+ R F V +GS + AA QL ++Q ++ +I+ LE +G LF R GL Sbjct: 1 MSHDIAWEDQRTFLAVLDTGSLSAAARQLGVAQPTVRARIASLEAALGTTLFTRAITGLI 60 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEF 115 T + L + + + + +S P +G +RI+ + +G +L L Sbjct: 61 PTSEARGLEAAARTMA---RASAMFVWLASSPPGLVAGTVRISVSDFVGVEVLPAMLARL 117 Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 +P I +L+L N D+ D A+R++ P Q +L+ RK+ I + +A Y+ Sbjct: 118 RQKHPHIVTELVLSNTPADLLEQEVDIAVRMQPPTQ-GALVARKVGAIALGLFAHRDYIA 176 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P +++ L +H LI + D + + + R++ + +S+ + + Sbjct: 177 RRGAPATVEALLEHELIGPD----RNRADLSLARALHPHLLRDRLAT-RTDSHPAQLALA 231 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GIA+ I + +P LV+++ +V P+ T + E L++ +++A N + Sbjct: 232 RAGLGIAIAQCPIARADPCLVQVLPEVALPALTTWIVTHEDLRDVPRIRATFNHLV 287 >gi|116053902|ref|YP_788339.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115589123|gb|ABJ15138.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 311 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 9/187 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F A +GSF AA +L L+ + + + ++ LE+ +G++LF R R LTLTE G Sbjct: 6 NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG--- 62 Query: 67 HRVTSEVYHKLETTQIELQE-SSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R EV LE Q L SSV +PSG L+++ + G++ + L EFL YPDI Sbjct: 63 ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180 DN+ +D+ + D AI + ++ R L H+ A+P YL++ R P Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFELPPPGVVARNLTPGHLILLASPAYLRDKPPIRHP 182 Query: 181 LSIQELD 187 + D Sbjct: 183 GDLGGFD 189 >gi|330971177|gb|EGH71243.1| transcriptional regulator, lysr family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 296 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 131/273 (47%), Gaps = 13/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA+ SFT AA +L +SQS++S + LE +G++L R R ++ TE G +L Sbjct: 9 LLAFLAVAKERSFTKAAARLGVSQSALSHTVRSLEARLGLRLLTRTTRSVSPTEAGERLI 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIAT---TIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++E L + P+GK+RI ++DL +++ LK FL YPDI + Sbjct: 69 QKVGPHFDEIEIELAGLSDLRDTPAGKIRINAMDHSLDL---IIRPVLKTFLHKYPDISV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ D +DI+ + D +RL + + + R + + +P Y + +P + + Sbjct: 126 EVCCDYSFVDIAAEGFDAGVRLGEAVADGMIATRIGPDMRLSVVGSPAYFEGRTKPETPR 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H +P + W D R++ + N ++ + G G++ Sbjct: 186 DLTAHRCNNL--RLPTNGGLYAWEFAKDSETLNVRVTGQVTFNGVYPLLDAALDGFGLSY 243 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 +P +V ++ L++++ED +P+F + Y Sbjct: 244 IPHDLVAEHIEAGRLIQVLED-WSPTFAGFHLY 275 >gi|209918150|ref|YP_002292234.1| putative transcriptional regulator [Escherichia coli SE11] gi|209911409|dbj|BAG76483.1| putative transcriptional regulator [Escherichia coli SE11] gi|324019008|gb|EGB88227.1| LysR substrate binding domain protein [Escherichia coli MS 117-3] gi|324116113|gb|EGC10037.1| LysR substrate binding domain-containing protein [Escherichia coli E1167] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYEQLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDTLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ED T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|254185061|ref|ZP_04891650.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|184215653|gb|EDU12634.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] Length = 312 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++ +S + LE E+G+ L R R + LTE G + Sbjct: 11 DRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF+ +P ++++ Sbjct: 71 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P L ++ + + G Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKP---YLIADNASVLRAFAQQG 247 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290 G+ALLP+++V+D+ +++ + F VY YP A K++A+ +FI Sbjct: 248 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 302 >gi|217979712|ref|YP_002363859.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] gi|217505088|gb|ACK52497.1| transcriptional regulator, LysR family [Methylocella silvestris BL2] Length = 307 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 136/301 (45%), Gaps = 20/301 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ +RVF V +GSF+ AA + ++ SS ++ I +E + +L R R L LT +G Sbjct: 7 WE-MRVFLQVVAAGSFSAAARIVGMTPSSTAKLIGRIEGRLAARLIERSTRSLRLTSEGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + L+ E+ + P+G +RI ++ GQ+ L L F +P I++ Sbjct: 66 LYRERAEAILGDLDALDAEVVGEARAPTGLIRINVSVPFGQHCLMPQLPAFAREFPKIRL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L + +D+ AD A R+ + + S L+ +L A+ YL+ P ++ Sbjct: 126 DLTLTDDVVDLYATGADIAFRIGQ-LADSELLAIRLGDARRRIVASKTYLEEYGIPRTVA 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLG 238 +LD+H + F +F A V R + N+ ++ LG Sbjct: 185 DLDRHKCLGF---------NFRRAAAVWPLQAGGRLTDREAQGAITANNGETLRCLATLG 235 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+A L ++ +K++ LV +++D + S V+ Y +++AF +F+ + R Sbjct: 236 LGLARLAEFHIKEDLKAGRLVTVLDDALVDSEAVHALYLGREHAPRRVRAFLDFMTPRLR 295 Query: 296 D 296 + Sbjct: 296 E 296 >gi|150397550|ref|YP_001328017.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029065|gb|ABR61182.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 125/291 (42%), Gaps = 9/291 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ ++R F VAR SFT AA +L +++S++S + LE +GI+L R R + T G Sbjct: 5 EFSEMRAFLEVARERSFTRAAAKLGVTRSALSHTVRALEERLGIRLLSRTTRDVAPTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + KP+G +RI D + + L FL YPDI+ Sbjct: 65 ERLVECIEPHFESIAAEISAISALRDKPAGHIRIVCPDDAIGMVFRPRLPAFLRDYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI DN +I D +RL + I + R + +P Y P S Sbjct: 125 VELIADNGFTNIVERQFDAGVRLGEAIARDMVAVRIGPDVRYAVVGSPDYFGRHSTPSSP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 QEL H I +P + W D R+ L +N+ + + G G+A Sbjct: 185 QELTNHKCINL--RLPTLGAIYAWEFNKDAHEFSVRVDGQLTLNNIEPALDAALDGIGLA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +V+ ++ L ++ D P+F Y Y + +N AF F+ Sbjct: 243 YAPKDLVQPYLESGQLQEVLAD-WCPTFQGYHLYYPSRRNPS--PAFSAFV 290 >gi|15838353|ref|NP_299041.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c] gi|9106824|gb|AAF84561.1|AE003998_3 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c] Length = 324 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 123/278 (44%), Gaps = 19/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F +AR GSFT AA L ++QS++S+ I+GLE + I+L R R ++ T G + Sbjct: 7 NDLLYFVTIAREGSFTRAAAHLGVTQSALSQAINGLEARLQIRLLTRTTRSVSPTAAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ++E+ EL E KP+G +RI + + + L L YPDI I+ Sbjct: 67 LLNAIGHRFDEIESELDELTELRDKPAGTVRITCGDHILRTTILPKLTPLLREYPDINIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ DI D D +R+ I + + M A+P Y + P + Sbjct: 127 FDVNYGFRDIVADRFDAGVRMGDTIDKDMIAVPIGPPLRMAIAASPEYFASHPVPKKPHD 186 Query: 186 LDKHNLITF------GDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 L HN I G + M L VD L N+ +++ ++G Sbjct: 187 LLNHNCINMRMQTSGGIYVWDFMRRGKQLNVRVD--------GQLIFNTTPNMVDAALVG 238 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 GIA LP+ + L+R++ED P F+ YF Y Sbjct: 239 LGIAALPEEEFAPHIEEGRLMRVLEDWCEP-FSGYFLY 275 >gi|5916087|gb|AAD55884.1|AF130250_1 hypothetical protein [Cupriavidus necator] Length = 249 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 15/252 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR+GSF+ A + SS++RQI LE E+G+ LF R R L TE G Sbjct: 8 ENLATFVDVARAGSFSAVARRKGQVASSVARQIDALEREMGVALFTRSTRALVRTEAGDL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + +L T+ + SG+LR+A + + +L YP + ++ Sbjct: 68 LFERATRILQELNETRDAVTALEQGVSGRLRVACLPAFARRHVVPHLGSLYAQYPGLTVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D ++ D IR+ + SSLI R++ + A P YL+ PL +E Sbjct: 128 LELTDRVVDPVLERFDVVIRVGQQ-ADSSLIARRIASQRYIVCATPAYLQAHGRPLHAEE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNS-YLSIMQYCVLGSG 240 L H LI M + V RP + C ++ LS++Q G G Sbjct: 187 LAHHRLIDRAH--STSMRGWR---EVLRPAHAASAAFAMECDDCDARRLSVLQ----GLG 237 Query: 241 IALLPDYIVKDN 252 IAL+PD+ V ++ Sbjct: 238 IALMPDWSVGED 249 >gi|254174211|ref|ZP_04880873.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|160695257|gb|EDP85227.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] Length = 336 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLCAHGVPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLVR++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|83720712|ref|YP_443139.1| transcriptional regulator [Burkholderia thailandensis E264] gi|167582148|ref|ZP_02375022.1| transcriptional regulator [Burkholderia thailandensis TXDOH] gi|167620306|ref|ZP_02388937.1| transcriptional regulator [Burkholderia thailandensis Bt4] gi|257139369|ref|ZP_05587631.1| transcriptional regulator [Burkholderia thailandensis E264] gi|83654537|gb|ABC38600.1| transcriptional regulator [Burkholderia thailandensis E264] Length = 313 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+QL+ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ +E + E ++ +PSGKL++ LGQ+ + + YP++Q+ L Sbjct: 66 LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D ++ + + + S L+ ++L A+ Y++ P Q+L Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIETHGAPQRPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H + G + P D W + P GE ++ +VN ++ G GI Sbjct: 186 AGH--VCLGMVAPGLYWD-EW--KLMGPHGEESVTLAPPPFRVNVAEALAAGIREGMGIG 240 Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y + + VR+M + + +Y Y A R ++ K R W Sbjct: 241 VLPLYSAIAGLRHGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|107023597|ref|YP_621924.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690681|ref|YP_836304.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105893786|gb|ABF76951.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116648770|gb|ABK09411.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 295 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 137/274 (50%), Gaps = 14/274 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SF AA +L++S SS +R + +E +G +L R R L+LT+ G H Sbjct: 7 MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAG---H 63 Query: 68 RVTSEVYHKL-ETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +++ H + E ++E +S+ +P G L+IA + G ++L + F + +P I Sbjct: 64 LYLAQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVP 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + D + L + I +++L++R L + AAP Y + P Q Sbjct: 124 EVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYAERHGTPAHPQ 183 Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + F D + + + F+ T R P S N L I + + G GIA+ Sbjct: 184 DLASHACLAFHADFMGEYLS-FDHDQT--RITVRPNKSASSNNVGL-IRNWALSGMGIAV 239 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 LPD++VK D+ L+ ++ + + YP Sbjct: 240 LPDFLVKSDLDDGRLLALLPGYRLEALEMNVAYP 273 >gi|323975077|gb|EGB70186.1| LysR substrate binding domain-containing protein [Escherichia coli TW10509] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SF+ AA+ L + S+SRQI LE ++G +L R R + LT +G + Sbjct: 7 MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V L Q+ + SGKLRI + ++LL L EFL +P I+++L Sbjct: 67 QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +DI D DC IR + +I L + M A+PHYL P S +L Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALSEDGVIACPLGKLTMVNCASPHYLTRFGYPQSPNDLT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + + F +A+V+ L VNS + + + G GI +P Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V++ R++E + P + ++ YP+ + + ++ F ++ Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290 >gi|320183887|gb|EFW58715.1| Putative transcriptional regulator LYSR-type [Shigella flexneri CDC 796-83] Length = 196 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 1/183 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G + Sbjct: 1 MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 61 QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L + M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179 Query: 188 KHN 190 H+ Sbjct: 180 SHS 182 >gi|295700883|ref|YP_003608776.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440096|gb|ADG19265.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 304 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 13/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F A+E + +S +SR I+ LE + I+LF R R ++LT++G + + Sbjct: 14 VFAAVVDAGTFAAASEVIGMSPPGVSRAIARLEKRLKIRLFNRTTRSVSLTDEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + + GKLR+ + +L L +F+ +P+++I+ I Sbjct: 74 VMPHLAGLEEAAVAAAGGASAVRGKLRVNLDPVCYRAILGQRLDQFMDAHPELEIEFIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187 + D+ ++ D A+R +P ++S+L+ RKL+ + AAP Y+ P ++L+ Sbjct: 134 DHLGDLVLEGFDLALRFGEP-RTSTLVARKLLDTAVVTVAAPSYIARRGRPAKPEDLEGP 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALL- 244 H + F + + + F W R + PR L VN +++ C+ GSGIA + Sbjct: 193 SHRCLEFRN--SETGKPFPWEFHRKRKHVVIAPR-GRLTVNDPGALLNACLAGSGIAQML 249 Query: 245 ---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++++ + L+ + D + +Y CYP K +AF +F+ Sbjct: 250 LFGAEHLIAEG-RLINLFPDWPDERYPLYACYPSRHHIPAKTRAFLDFV 297 >gi|260466907|ref|ZP_05813090.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259029303|gb|EEW30596.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 309 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 133/283 (46%), Gaps = 20/283 (7%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHRVTSEVYHKL 77 SFT AA ++ + +SR++ LE +G++L +R R ++LTE G++ L RV + + Sbjct: 24 SFTRAAARVGRDATILSRRLQSLEERLGVRLLHRTTRSVSLTEAGAEFLVRVRAILASVD 83 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + P G LR+A G+ + L +FL +PD++I+ N+ D+ Sbjct: 84 EAEAAASAHAGGGPRGLLRLALPGTFGRMWIGPLLPQFLADFPDVRIEAEFSNRFADLVA 143 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 + D A+RL ++ S L+ RK+ T AAP YL P + Q L +H+ + F Sbjct: 144 ENFDVAVRL-GALEDSRLVARKVATRRRLLCAAPTYLARSGTPETPQALLEHSCLGF--- 199 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGIALLPDYIVK- 250 + F +R E R ++V+ L +++ V G G+ + D++V Sbjct: 200 --SGFQTFPAWEMTNR---EGRRVRVEVSGPLVSDDAEVLVEAAVQGVGLMMSTDWLVGR 254 Query: 251 --DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LV ++ED + VY P A K +AF ++I Sbjct: 255 ELADGRLVPVLEDWTLADEGAVYVVMPSAKGQAAKTRAFADWI 297 >gi|222106519|ref|YP_002547310.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221737698|gb|ACM38594.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 303 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/303 (24%), Positives = 137/303 (45%), Gaps = 25/303 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +G+FT AAE+L + +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRAFIRVVETGNFTRAAERLDMPKATVTNLIQGLEAHLQTKLLNRTTRRVMVTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +L L + P G+LR+ + ++ +L +F +PD+ I L Sbjct: 67 ERAVQIVSELAELDESLSNAQSTPRGRLRVEMSGAFSDWIVVPSLCDFHQKFPDMHIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R P SLI R++ + M AP Y++ P +EL+ Sbjct: 127 VSDRMVDYLAENVDCALRAGTP-SDQSLIARRVCDVEMITCVAPRYIEKFGIPAHPRELE 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISC---LQVNSYLSIMQYCVLG 238 H+ C+ F+ + P E IS + VN + M G Sbjct: 186 NHHY---------CVNYFSSNNSRKMPFTFKKDKEELEISARYIVSVNDSRTYMTCAQNG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFL 292 GIA +P ++ + LV+++ + +Y YP + K++ F ++ + L Sbjct: 237 LGIAPIPRFMAASLLASGELVQVLAEWRREPLPLYIVYPPNRHLSNKVRVFVDWLVKLLL 296 Query: 293 KAR 295 +AR Sbjct: 297 EAR 299 >gi|85717275|ref|ZP_01048230.1| transcriptional regulator, LysR family protein [Nitrobacter sp. Nb-311A] gi|85695916|gb|EAQ33819.1| transcriptional regulator, LysR family protein [Nitrobacter sp. Nb-311A] Length = 329 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 22/298 (7%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R+F V +GSFT AAE+L S S+ +S LE E+G++L R R ++ TE G Sbjct: 34 RMFVAVMETGSFTAAAERLGTSSGQASKLVSRLENELGVRLLSRTTRAVSPTEAGHAYFD 93 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + + +++ S P G+LR+ + G + L EF +P+I++ + Sbjct: 94 RLRPLLEEFDNLDAAVRDKSGAPRGRLRLTVPLTFGTTEIAPGLNEFASKFPEIELDVSF 153 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +++ + D AIR+ + SS+I RKL + + + YLK EP +L Sbjct: 154 SDRMVNLVDEGFDMAIRVGR-ADDSSMIARKLCDVRIVIVGSQTYLKRRGEPKRPNDLAH 212 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--------NSYLSIMQYCVLGSG 240 + C+ D N+ P+ R + + V ++ + + G G Sbjct: 213 FD----------CIIDTNFREPNRWPLRNARGTPIDVAVGGRLRYSNAEACLNAAEAGLG 262 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +A +P +I R+++ T + V+ YP K++ +F+ + R Sbjct: 263 LACVPSFIAGKALRAGRTRRVLQAFETEPYAVHALYPHGRHLATKVRVLVDFLVERYR 320 >gi|311106765|ref|YP_003979618.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310761454|gb|ADP16903.1| bacterial regulatory helix-turn-helix protein, LysR family protein 112 [Achromobacter xylosoxidans A8] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 136/310 (43%), Gaps = 43/310 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L ++ V +GSFT AA+ L +++ +S I LE E+G+ L R R L LTE G Sbjct: 5 NRLAMYAAVVEAGSFTAAADALGTTKAVVSFNIKQLEQELGVALLTRSTRRLALTEAGEG 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + ET E + SG LR+ ++D G ++ L + +P +++ Sbjct: 65 FYGHCARLLRDAETAVDEARSGQAALSGSLRVTASVDYGNLVVAPALAAYAREHPALRVS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D+ + D AIR+ ++ SS ++ + A+P L P + Sbjct: 125 YRAGSAHADLIAERLDLAIRV-GALEDSSYRATRIGQFRLWLVASPALLAQHGMPRT--- 180 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---------------ISCLQVNSYLS 230 P+ + WLA +RP R Q ++ + Sbjct: 181 -------------PQALAALPWLA--NRPGRSDRWRLTDGKGREHELRVAPVAQADTASA 225 Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKA 285 ++ + V G G+A LPD+++++ L R + + PS+T VY YP+ + K++ Sbjct: 226 LLAFAVAGCGVAALPDWLLQE--PLARGVLQRVLPSYTLPRQEVYAVYPDTRHVSAKVRR 283 Query: 286 FRNFIFLKAR 295 F + FL+AR Sbjct: 284 FID--FLRAR 291 >gi|331664673|ref|ZP_08365579.1| HTH-type transcriptional activator TtdR [Escherichia coli TA143] gi|331058604|gb|EGI30585.1| HTH-type transcriptional activator TtdR [Escherichia coli TA143] Length = 310 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPRPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LVR++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|332873390|ref|ZP_08441344.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|332738453|gb|EGJ69326.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 300 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 147/300 (49%), Gaps = 20/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +R+ + +++ + +F YPDI+I+ Sbjct: 66 FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + H++ A+P YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCESHLYIVASPDYLALKGTPTQPEE 184 Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L++H+LI F + P + D + A S ++ +S ++ Q + G G Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IA L ++ I KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|171320681|ref|ZP_02909697.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171094084|gb|EDT39177.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 325 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPDDLARFETLDTPSVDGRHV--FNLIA----PDGTRHLHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|84393129|ref|ZP_00991894.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] gi|84376286|gb|EAP93169.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] Length = 294 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 17/274 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F VA F+ AA+QL S S +SRQ+S LE VG+ L R R ++LTE G Sbjct: 4 FEGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTESGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ L+ ++ + SG LR++ +N + L EF +P++ I Sbjct: 64 TYYQQCRDLVIGLQQANEQVTSQQTQLSGTLRVSAAGAFAENHVAAALMEFAKDHPELTI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + K ++ D AIR + + S L+ RKLV M A A+ Y++ P + Sbjct: 124 EMNFNTKMVNFIEGGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQDYIEQFGTPTHPE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L H+ I WL + +P+ R+ + N+ ++++ C G G+ Sbjct: 183 QLKMHSCII--------ANSDQWLFEKEGKPLNAVRVHGRWRSNNSSAVLKACEEGLGVV 234 Query: 243 LLPDYIVK---DNPNLVRIMED---VITPSFTVY 270 LP N LV ++E+ T S+ VY Sbjct: 235 YLPKSSFNGGLSNGKLVPVLEEYWGAGTSSWVVY 268 >gi|298293680|ref|YP_003695619.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296930191|gb|ADH91000.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 129/298 (43%), Gaps = 14/298 (4%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+FD L V V GSF AA L L+ S +SR I LE + ++L R R + Sbjct: 1 MAFDGRVLAGVGVLAAVVEGGSFVRAATLLGLTASGVSRAIGRLEARLHVRLLDRTTRAI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + +E + S G+LR+ +L G L F Sbjct: 61 TLTDEGRRFYEEVRPHLAAMEEAAAAVSGSGGVVRGRLRVDVDPFFLPLVLAGRLGIFCD 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ I+ + + D+ D D AIR +P + ++L+ RKL+ + AAP YL Sbjct: 121 RHPDLAIEFVSSERLGDLVSDGIDLAIRFGEP-RHTALVSRKLIEAPILTVAAPAYLARF 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQY 234 P EL H + F D P + W R P+ E R L + ++++ Sbjct: 180 GAPAHPSELSTHRCLQFVD--PHSGRPYPWEFVKGRQKLPV-ETR-GPLTFTNPQALLEE 235 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 C+ G+G+A + + V LV + F +Y +P K++AF +F Sbjct: 236 CLAGTGVAQVIGWGVGQLLKEGRLVDLFPAWHGERFPLYALHPSKKHVPAKVRAFIDF 293 >gi|254719916|ref|ZP_05181727.1| LysR family transcriptional regulator [Brucella sp. 83/13] gi|265984923|ref|ZP_06097658.1| transcriptional regulator [Brucella sp. 83/13] gi|264663515|gb|EEZ33776.1| transcriptional regulator [Brucella sp. 83/13] Length = 306 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 8 MEIFARIVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 68 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + AAP YLK P +I++L Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E N V RP G LQ NS + + + G GIA + Sbjct: 187 DHICLAPHNNDPWRLEGPNG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 240 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287 >gi|148555721|ref|YP_001263303.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148500911|gb|ABQ69165.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1] Length = 305 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 140/300 (46%), Gaps = 16/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ +F VA GSF+ AA+ L LS++++S+ +S LE + LF+R +R L+LTE G Sbjct: 6 DFEAWAIFAKVAELGSFSAAADDLALSKATVSKAVSRLEQRLAAPLFHRSSRKLSLTESG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + + E P G +R+A + G L+ L F YP++ Sbjct: 66 QMAQERAALLLAEGEAIEEAISERGAVPRGLVRLAAPMSFGIAHLRPILPLFHQAYPEVV 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L ++ +D+ D A+R+ + ++ S+L R+L + + AP P Sbjct: 126 IDLHLSDERVDLIEQGFDVALRIGQ-LEDSALKARRLFPVRLPLVGAPALFDRLGRPAHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 ++L ++ + + F A GE + ++ N+ ++ + G+G Sbjct: 185 RDLVRYPAFAYTHVRHPGRWHFRHPAE-----GELSVEIKGPIRANNGDVLIDALLAGTG 239 Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293 IA PD++V + +L ++ D + PS ++ P ++K +F+ FLK Sbjct: 240 IATAPDFLVWRALADGSLEEVLSDWTSGPSIALHLVTPPTPLRPARVKVLIDFLAAAFLK 299 >gi|16263602|ref|NP_436395.1| GstR transcriptional regulator [Sinorhizobium meliloti 1021] gi|14524309|gb|AAK65807.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 19/299 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F +A SGS T AA +L+ S ++SR ++ LE +VG++L +R R L+E G Sbjct: 9 EDLEAFIHIAESGSLTRAATRLNRSLQAVSRSLTSLEVDVGLQLVHRTTRHSALSEAGQA 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R ++ Q+E PSG LR+ + G + L + E++ YP ++ Sbjct: 69 FYRRVKPAVLEIREAQLEAAGRRTGPSGILRVGAPMLFGPDFLVPIVAEYIESYPQAEVD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D++ D +R+ + S+L ++L + + AP Y P E Sbjct: 129 LSLTDAFVDLASKGIDVVVRIAD-LPDSNLQSKRLGALRRVVFGAPSYFARNGRPEHPAE 187 Query: 186 LDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239 L +H I T G+ W +D G+ R+ + N+ +I G Sbjct: 188 LRQHACIVRTIGN------RPGQWAFQID---GKRRMVGVRGSFRSNAMAAIYSAVRSGL 238 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+ P + ++ D + ++++ ++ + E+ + K++AF + + ++ R Sbjct: 239 GLGYSPLWQIRHLVDAGQVEIVLQEFEPKPVPIHALWQESTRPPAKVRAFVDLLAMRLR 297 >gi|332186152|ref|ZP_08387898.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] gi|332013967|gb|EGI56026.1| bacterial regulatory helix-turn-helix , lysR family protein [Sphingomonas sp. S17] Length = 305 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 2/188 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L +F V GSF+ A L L+ S+++R I +E +G++L R R LTLT +G Sbjct: 14 SLALFASVVEEGSFSAAGRTLGLTPSAVARAIDRIEARLGVRLLLRSTRALTLTAEGQAY 73 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + L+ + ++ + P G+LRI+ + G+ + L +F YP I I + Sbjct: 74 LLAARRILADLDDAEQQIADQGA-PRGRLRISAALAHGRLCVVPLLGDFARAYPHILIDI 132 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + +DI+ D AIR P+ S L RKL A+P YL P ++L Sbjct: 133 ALTDTLVDIAAGQVDVAIRF-GPLADSGLTARKLSEARRVIVASPDYLARAGTPRVPEDL 191 Query: 187 DKHNLITF 194 HN + F Sbjct: 192 HAHNCLNF 199 >gi|260363431|ref|ZP_05776278.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] gi|308112554|gb|EFO50094.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] Length = 272 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 18/277 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +FY + GSF+ AA + L++S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 5 DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 VY + T + + SG ++I G+ +L G + EF YPDI I Sbjct: 65 FFVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +DI + D AIR + SSLI RKLV + A+P YL P E Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIE 183 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L KHN + + E D + TVD L N+ ++ +LG Sbjct: 184 LTKHNCLVYSYQETGAREWAFKAGDKMYQVTVD--------GNLCTNNSSALRNVALLGQ 235 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 G+ +P +V ++ +L+++ ++ +Y Y Sbjct: 236 GVIYVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVY 272 >gi|218245164|ref|YP_002370535.1| LysR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257058190|ref|YP_003136078.1| LysR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218165642|gb|ACK64379.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 8801] gi|256588356|gb|ACU99242.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 8802] Length = 297 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 129/275 (46%), Gaps = 8/275 (2%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 SF+ A + +Q +IS+QI+ LE ++G++L R L+LTE+G K ++ ++ + Sbjct: 18 SFSAVAREQQTTQPTISKQIAALEKQLGVQLLIRSTTNLSLTEEGKKYYQYCQQILETVA 77 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + L+ + G LR+ ++ GQ + LK F+ YPD++I L++ + ++I + Sbjct: 78 EAEASLRGKE-QAIGILRLGCSVLFGQMQIVPRLKTFISRYPDVKIDLMMADYFVNIVEE 136 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D IR+ IQ +SLI ++ T A Y + EP + +EL H+ I + L Sbjct: 137 GLDLCIRIGN-IQDNSLISHRIGTTRRVTVATKRYFEQAGEPQTPEELVHHHCIVYTRLS 195 Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN---L 255 F D I Q NS ++I + GIA++P ++ D N L Sbjct: 196 TGNEWHFQ---GKDGIIKVQVGGQFQTNSSIAIRAAVLSDLGIAVVPVWMFGDEINRGDL 252 Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ D S ++ Y + K+ F +F+ Sbjct: 253 KVVLSDYQPTSLPIHAVYRRSRFYPAKITCFIDFL 287 >gi|120611241|ref|YP_970919.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589705|gb|ABM33145.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 303 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 3/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F A SFT AA + L+ +++SR IS LE +G++L R R + LTE G Sbjct: 13 IELFCTTAEQQSFTAAARAMGLTPAAVSRSISRLEARLGVQLLVRTTRQVRLTEAGQAYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E+ P+G +RI+ G + L F YP I + + Sbjct: 73 ERCRQAITQLIDAEREVTGQQQAPTGLVRISLPTPYGHYRVLPLLPAFRTRYPGITLDVQ 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D A+R R + S L+ RKL + A P YL P +++ L Sbjct: 133 LTNRNIDFAAEGFDLAVRGRT-LPDSGLVARKLEDAELVVVATPAYLSRHGRPTTLESLQ 191 Query: 188 KHNLITFGDLIPKCMEDFNWL 208 +H+ I F L+P + WL Sbjct: 192 EHDCIQF--LLPSTGQPTPWL 210 >gi|71277813|ref|YP_271575.1| LysR family substrate binding transcriptional regulator [Colwellia psychrerythraea 34H] gi|71143553|gb|AAZ24026.1| substrate-binding transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V+A GSFT AAE L S+S IS+Q++ LE+ +G+ L R R LT QG + Sbjct: 10 IRTFVVLAEQGSFTKAAEALACSRSHISKQLAQLESSLGVSLLIRTTRTQHLTPQGEAFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + ES+ SG +RI + + ++ + +F++L+PDI I+L Sbjct: 70 ERCKQSLNGISHAIDRVLESADSLSGHIRINCVGGYIAEEIIATLISDFMVLHPDINIEL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ D R+ + + SSLI RKL I ++ Y +P YL +P + + Sbjct: 130 DFSSRRVDLVSGEFDFVFRMGE-LADSSLIARKLTDIKINTYVSPKYLAKNGKPNDPKGM 188 Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H I G L NW + ++ I L + ++ + G+GI Sbjct: 189 VHHRCIA-GSLK-------NWTFINSDNNKKIEVIVAGNLTCKNGRVMVSSAIAGNGIIR 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P+ K + LV + + Y Y + +LKAF++++ Sbjct: 241 VPELYCKTELEQGLLVPLFDHWQVEPTPFYLVYVQDKHQPLRLKAFKDYV 290 >gi|146277433|ref|YP_001167592.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555674|gb|ABP70287.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17025] Length = 297 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 128/264 (48%), Gaps = 12/264 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR+F VAR+ S + A L L +++ R+++ LE +G LF + +G LTE Sbjct: 1 MDWDDLRIFLAVARAESLSGAGRGLRLDPATVGRRVARLEEALGAPLFAKSPQGYALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + T E + + SG++RI LL L P + Sbjct: 61 GQRLL-AHAERAEQAVTEAAEDLQGAAGLSGQIRIGAPDGCANYLLPQVLAAICDGNPGL 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++Q++ + ++S AD AI + +P ++ L +KL H+H A+ YL + Sbjct: 120 EVQIVALPRVFNLSKREADMAIGVSRP-EAGRLRVQKLADYHLHLAASRDYLARHPPIAT 178 Query: 183 IQELDKHNLITF-GDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +++L H ++ + D+I K ++ L + P +S +Q+N + G+G Sbjct: 179 LEDLVAHRMVGYIPDMIFDKELDYLTGLGSGAVPFASNSVS-VQLN-------WLRAGAG 230 Query: 241 IALLPDYIVKDNPNLVRIMEDVIT 264 + ++ D+ + P LV+I+ + ++ Sbjct: 231 VGIVHDFAMPSAPELVKILPEALS 254 >gi|323168205|gb|EFZ53891.1| hypothetical protein SS53G_1518 [Shigella sonnei 53G] gi|323172306|gb|EFZ57943.1| hypothetical protein ECLT68_2956 [Escherichia coli LT-68] gi|332094921|gb|EGI99961.1| hypothetical protein SB359474_1990 [Shigella boydii 3594-74] Length = 257 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245 >gi|307730281|ref|YP_003907505.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584816|gb|ADN58214.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 328 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 25/301 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EF+ YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ +D+ D D A+R+R P ++++++ R L AP L+ P Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSAPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L Q D T +N +A P G EPR+ V + LS ++ Sbjct: 185 L--QPTDLARFATLDVPTSDGRHVYNLIA----PDGSRHVHEHEPRL----VTADLSTIR 234 Query: 234 YCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 VL G GIA LP+ + L +M P+ +Y + + G + A R F Sbjct: 235 EAVLCGVGIAALPEMMYGAPLRAGQLSPVMPGWTFPAPQLYAVF---VSRQGMVPAVRAF 291 Query: 290 I 290 + Sbjct: 292 V 292 >gi|222081254|ref|YP_002540617.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725933|gb|ACM29022.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 313 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 4/282 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F VA +GSF AA+ ++L +SS+S+ + LE +G KL R R +T+T +G H Sbjct: 7 IKTFVRVAEAGSFAKAADTMNLPRSSVSKLVQDLEAHLGTKLVERTTRSVTMTTEGVAYH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + S P GKLR+ L +L +L +F YPDI + L Sbjct: 67 ERALKLLADLDDMDGTVAGSRSAPKGKLRVDIGSVLANQILIPSLSDFQSQYPDIDLMLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ D+ + DC IR + SS+ RKL + A+P YL P ++ Sbjct: 127 VSDRPADVVSEGIDCVIR-GGSLSDSSMKARKLCELDYVICASPAYLDGLELPQRPDDIQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++++ + +R P + + VN + + + G GI + Sbjct: 186 AHRIVSYFSASSGKRFPLRFQRGDERSEYLPTSAGISVNESTAHLNALLSGLGIGQSFGF 245 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + + ++ LV ++ + + ++ YP +L+AF Sbjct: 246 LARPHFESGALVELLPEWKPDNHPLHLVYPADRFPNPRLRAF 287 >gi|170724498|ref|YP_001758524.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169809845|gb|ACA84429.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 12/295 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GS T AA++L +S+S +S+ + LE +L R R + LTE G +L Sbjct: 8 RMLVFANVVEQGSLTGAADELGISRSMVSQHLKKLELRCETQLIERTTRKMALTEDGQQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +E+ + + Q S + G++ + T I G+ + ++ EF +P ++I L Sbjct: 68 YHHCAELLLLAKQAEETTQPKSTELRGRVSLLTPICFGEQFITPHIGEFRRQFPKLEINL 127 Query: 127 ILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 LD++ I+ + D AI+ ++P +S + KL + A P Y++ PL Sbjct: 128 QLDDRRINRLENSVDIAIQNETQQPTDTSFI---KLGQFDEYIVATPEYVQQHGSPLHPD 184 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H ++ +P+ N P I C NS I Q G+GIA+ Sbjct: 185 MLLNHQWILQTSTHLPQSFLLENSYGDKFTIKVSPFICC---NSRHGISQMVKQGAGIAI 241 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP Y+V+D L+ I+ D VY +P ++KAF +FI +K + Sbjct: 242 LPSYLVEDEIAQGELIHILPDYHLDEGGVYAIHPFDKVIPPRVKAFLDFIQIKMK 296 >gi|154245815|ref|YP_001416773.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159900|gb|ABS67116.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 310 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 15/273 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F + +GS + A ++ LS +S+++ LE +G +LF R R +TLTE G + Sbjct: 8 LEIFARIVTAGSLSAAGREMGLSPPVVSKRVQRLEERLGARLFQRTTRKVTLTEAGQGFY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + +L S + G LR++ G+ + +L+ L P + I L Sbjct: 68 DRVVAILASIEEAESQLARKSSEARGLLRVSAPTSFGRLHIAPHLRPLLDANPGLTIDLE 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI + D A+R+ + SSL+ R+L ++H A P YL EP I +L Sbjct: 128 LSDSFVDIVGEGFDVAVRIAD-LDDSSLVARRLASVHRVLCATPDYLARVGEPGHISDLS 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H L+ P +E D P+ S L+ NS + + + GIAL + Sbjct: 187 GHVLLATHGQDPWRLEG------PDGPVTLRVHSQLRTNSNEVVREAVLASVGIALRSTW 240 Query: 248 IVKDNPNLVRIMEDVITPSF------TVYFCYP 274 V P L V+ P + ++ YP Sbjct: 241 DV--GPELRSGALKVVLPRWRASHRVGLFAVYP 271 >gi|134290919|ref|YP_001114688.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134108|gb|ABO58433.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 313 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AA++L ++ + SR ++ LET + +L R R + LT+ G + Sbjct: 7 MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + E ++ VKPSG+L + T GQ L + + YP + ++L Sbjct: 67 DRCQRILGYIDEAEAEAADAQVKPSGRLHVHATTSFGQAYLVPAVVRYRQRYPSVAVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L DI + D +++L + S LI ++L +H AAP YLK P ++++L Sbjct: 127 LSQHIPDIIDEGYDVSLQLSTTELPDSGLISQRLGDVHSVLCAAPAYLKEHGTPRTVRDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242 + H + ++ W +D P G E S QVN ++ G GI Sbjct: 187 ESHACL---QIVTPIFPRDRW--HLDGPDGRETFELPTSDFQVNIAEALGAALRAGLGIG 241 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + LVR++ + TVY Y K++ F F+ Sbjct: 242 SLPMSTAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVEFL 292 >gi|218673979|ref|ZP_03523648.1| transcriptional regulator, LysR family protein [Rhizobium etli GR56] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 127/295 (43%), Gaps = 17/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A ++L ++Q+++S QI LE VG LF R R + LTE Sbjct: 7 FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ID S + D IR L +L+ + +P ++ Sbjct: 124 AVRFQATSDIIDFSREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIKE 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++L K +L GD+ K + + D RP + ++ ++ +S G Sbjct: 183 PRDLLKFDLFDAGDIWWKQWFEAAGVTDTDLDRRPRNQLGSQAVEADAAMS-------GH 235 Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A+L L R+ E + + YPE +N K+KAFRN+I Sbjct: 236 GVAILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNVPKIKAFRNWIL 290 >gi|149187968|ref|ZP_01866264.1| Putative transcriptional regulator, LysR family protein [Vibrio shilonii AK1] gi|148838364|gb|EDL55305.1| Putative transcriptional regulator, LysR family protein [Vibrio shilonii AK1] Length = 293 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 23/279 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L + V SG F+ AAE L + + +SR +S LE+++G+ L R R + LT++G + Sbjct: 6 DDLEILLSVVDSGGFSAAAEVLDVQVAKVSRSVSKLESQLGVTLLNRTTRRIELTDEGRQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E L+ T+ E+ P G+LR+ + L + EF YPDI+++ Sbjct: 66 FVDGVREGLRVLQQTEEEIMARGELPKGRLRVDAASPFVLHQLVPLIAEFNREYPDIELE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ K + S+L + L ++ A+P YL P S + Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LTDSTLHAKPLGKSLLYLVASPDYLARRGYPKSATD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSY-LSIMQYCVLGSGIAL 243 L H+LI F + K + W P+ G P I V+S ++ Q + G+GIA Sbjct: 185 LSTHSLIGF--VGAKVLN--QW------PLPGNPTIRPSMVSSNGETVRQLTLAGNGIAC 234 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282 + ++VK + I E ++ P E L TG+ Sbjct: 235 MSGFMVKQD-----IEEGLLVP-----LLESEKLTTTGR 263 >gi|116252479|ref|YP_768317.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257127|emb|CAK08222.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 297 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 6/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR+ SFT AA +L +SQS++S I GLE +G++L R R + TE G + Sbjct: 7 NDLIAFLAVARAQSFTKAAGKLGVSQSALSHTIRGLEERLGLRLLTRTTRSVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++E+ L KP+G +RI +L L++ L YPDI ++ Sbjct: 67 LLVSIGPRLDEIESELAALSAFREKPAGTIRINAGEHAADAVLWPALQKLLPDYPDINVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+D DI + D +RL + + + R + M AP Y +PL+ Q+ Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPDMRMAVVGAPAYFDTRPKPLTPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 L HN I +P + W D R+ V + +++ VL G G+A + Sbjct: 187 LTDHNCINL--RLPTYGSVYAWEFEKDGRELRVRVEGQLVFNNIALRLNAVLAGMGLAYM 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P+ +V+ + LVR++ED P + YP Sbjct: 245 PENLVEAPLADGRLVRVLEDWCLPFSGYHLYYP 277 >gi|76804022|gb|ABA55965.1| LysR family transcriptional regulator [Vibrio sp. DAT722] Length = 305 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 131/268 (48%), Gaps = 15/268 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W +R F VA GSFT AAE + S++++S+ +S LE+ +G++L YR R L LTE Sbjct: 3 NLSWRGIRAFIYVAECGSFTSAAEAMGASKANVSQLVSELESSLGVQLLYRTTRQLRLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120 G R E +L+ Q+++ + G++ + + +G+ L+ + F YP Sbjct: 63 IGDGYFRKCKEAMLQLDAAAEWAQQTTSEIKGRIHMNSVGGPIGEELIAPLVMSFQSAYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++++L +D+ D D +R+ + + S+LI R+L T+ H A+P +L+ + Sbjct: 123 NVEVELDFSKHRVDLIEDSYDLVLRVGE-MPDSTLIARRLTTLRTHYVASPDFLERHPKI 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL----------ATVDRPIGEPRISCLQVNSYLS 230 L ++L LI G + M++ N A R + +S L V Sbjct: 182 LIPEDLKALPLI-HGSVDHWIMKNHNEQRIINVGQGIKAATGRTMRHAAVSGLGVTRLTD 240 Query: 231 IMQYCVLGSG--IALLPDYIVKDNPNLV 256 + + L SG I +LP++ K +LV Sbjct: 241 VYCHADLASGRLIEVLPEWSEKTLLSLV 268 >gi|295700214|ref|YP_003608107.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439427|gb|ADG18596.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 139/293 (47%), Gaps = 24/293 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A + +FT A++L LS S+I++ I+ LE +GI+LF+R R + LT +G L Sbjct: 7 LSIFVHAAETRNFTRTAQRLGLSASAIAKSIARLEDRMGIRLFHRSTRNVMLTHEGEMLL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E + PSG+LR+ I + L++F++ +P+I++ + Sbjct: 67 ESCRRIIEEVEMIEERFTRRGKAPSGRLRVIAQIP--SAYIAPVLRKFIVAFPEIELDME 124 Query: 128 LDNKD---IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 I+ D A C S L+ + L + A Y + C P++ Q Sbjct: 125 WGTGAAGLIESGFDVAICP----GLDTDSRLMSKHLGYSRICIAGAASYFERCGTPVTPQ 180 Query: 185 ELDKH---NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H +L G LI W L + GEP +S + V+ +++ GSG Sbjct: 181 DLAHHVCLHLKDGGKLI-------RWPLGLGESDAGEPPVS-MAVSMLGALVNLVECGSG 232 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LP++ ++ + ++ R++ D ++ S+ +P + K++AF +F+ Sbjct: 233 IACLPEFAIERQLKDGSMRRVLGDHVSGSYQCVAVWPSSRHMATKIRAFVDFV 285 >gi|295677632|ref|YP_003606156.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295437475|gb|ADG16645.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 317 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 1/188 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A+ GS + A ++ L+ ++ S +++ LE + +LF R R L LT++G Sbjct: 7 IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEARLKARLFERTTRQLRLTDEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + LQ GK+R++ T D G+NLL L EF LYPD+ L Sbjct: 67 NCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPDVTFALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AIR P Q SSL+ R+L A+P Y+ EP +L Sbjct: 127 LSDALANLVQEDIDLAIRFGVP-QDSSLVARRLAPNRRVLCASPEYIGRRGEPKDPLDLA 185 Query: 188 KHNLITFG 195 + I G Sbjct: 186 NFDCIVLG 193 >gi|270264196|ref|ZP_06192463.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041845|gb|EFA14942.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 287 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/280 (21%), Positives = 127/280 (45%), Gaps = 15/280 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW L+ F V+AR+GS + AA +L +++ R+++ LE +G++L R R LT Sbjct: 2 FDWQDLKHFVVLARTGSLSAAARELGCDHATVGRRVAALEKALGLRLILRLPRSTPLTPD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + +E+ ++ + + P ++RI+ + ++ ++ EF +P I Sbjct: 62 GQRVTGLAAEIENQSHAIARHARSAGETPQAQVRISAPPSIAARVIAPHIAEFHQAFPHI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L + ++ A+ A+R+ +P Q L+QR + + YA P + + Sbjct: 122 TLILSGEASIAELDRGDAEVAVRMVRPQQPDLLVQR-IGMMRYRLYATPQHAALPEAARA 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 D H + + + + + RP+ Q + S+ + G G Sbjct: 181 FIAYDHH----YSN---QPHQQWLLQLLQGRPV------VFQASDLFSLQEAARSGLGAV 227 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPEALKNTG 281 +LP ++ D+P LV + + P+ ++ YP+ ++T Sbjct: 228 VLPTFVADDDPALVALPTSIAPPTRELWLVTYPDLARSTA 267 >gi|323494364|ref|ZP_08099476.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311527|gb|EGA64679.1| transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 293 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 39/306 (12%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S+IS++I LE +G++L R R +T TE Sbjct: 1 MDWIQSVQSYIRVVDEGSFNGAARKLNTTSSAISKRIHWLEERIGVQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ + ++ E + S P+G L+I T+ +G L L +FL +YPD Sbjct: 61 AGALFYQRAKVQLDEWQSIVDETRSVSQTPAGLLKIGATLAVGSKFLVQYLDDFLQMYPD 120 Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKN 176 I+IQL ++S+D + + + I+ + + K + H YA+P Y++ Sbjct: 121 IRIQLTTTTPGQLPELSLD-----LFISREIEQLNSLSFKATALFEHRAGFYASPDYIEQ 175 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQ 233 EP ++L HN++ +G +RP E ++ Q +N + Sbjct: 176 HGEPTIAKDLAHHNMLVWG----------------ERPQREITLTNGQKLLLNGNFATTN 219 Query: 234 YCVL------GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 L G G+ L D ++K+ L RI+ D+ TVY YP+ + K Sbjct: 220 PEALYYAAKNGMGVLLSNDVMIKEELRLGTLKRILPDITADEATVYAYYPKLDYQHTRTK 279 Query: 285 AFRNFI 290 F +++ Sbjct: 280 LFLDYL 285 >gi|317403959|gb|EFV84423.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 296 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 142/298 (47%), Gaps = 24/298 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKL 66 L F ++AR + + A QL L+ + +++++ LE +G++L R R ++LT +G + L Sbjct: 9 LEFFVLLARHRNLSTVARQLDLTPPAATKRLAQLEARLGVRLVNRTTRSISLTPEGETYL 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 H T + E ++ SV P G LRI T+ G+ + + EF L +P +++QL Sbjct: 69 HYATRILADVREMEEVVSSSGSV-PKGLLRINATLGFGRTAIAPIVSEFALHHPQVEVQL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ D IR + L+ R++++ AAP YL P S+++L Sbjct: 128 DVTDRPIDLVESGVDLGIRF-GALPDQRLVARRVLSNRRFLCAAPRYLARHGTPASLRDL 186 Query: 187 DKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238 H I I + ED W T D R ++V+ LS ++ + + G Sbjct: 187 ADHQCI-----IHRQNEDAYGVWRFTRD-----GRAETVKVHGALSSNDGDIVLNWALDG 236 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI + ++ + ++ L ++ + I PS ++ YP + + +AF +F+ + Sbjct: 237 HGILVRSEWDLAKYLESGRLRVVLPEFILPSADLFVYYPSKRDLSARTRAFIDFLMAR 294 >gi|229590782|ref|YP_002872901.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229362648|emb|CAY49556.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 19/295 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V R +FT A+E+LH++QS++S Q+ LE G++LF R + L LT G+ L Sbjct: 10 LRAFEVATRHATFTSASEELHVTQSAVSHQLKHLEDLWGLQLFQR-GKSLRLTPAGAALA 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + LE T +L+E K +L+++ T L L +P+I I L Sbjct: 69 PIVREFFMNLEATLSDLREQ--KGRVRLKVSATYSFALKWLLPRLPSLSQQHPEILITLE 126 Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +K I S +D AIRL P S + R+ + A+P L P Sbjct: 127 TSDKAITFSSADSDVAIRLGNGNYPGLHSEFMLRE----QIFPVASPDLLNRFGTPQEPA 182 Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL ++ L+T DL+PK F + + E S ++ ++I + +LG GIA Sbjct: 183 ELLRYPLLTRDGADLVPKWEAWFEHVGVGSCALNE---SVRFADTNMTI-EAALLGHGIA 238 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 L V+ N LVR+ E +F P+ +++ + +FR+++ ++ Sbjct: 239 LARSGHVEAEINDGRLVRLFEVPFASPVAYFFVCPKGIESQPHIISFRHWLLAES 293 >gi|197103574|ref|YP_002128951.1| transcriptional regulator, LysR family [Phenylobacterium zucineum HLK1] gi|196476994|gb|ACG76522.1| transcriptional regulator, LysR family [Phenylobacterium zucineum HLK1] Length = 297 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 130/283 (45%), Gaps = 7/283 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD L+ + V +GSF+ AA L+Q ++ R I LE ++G LF R RGL T+ Sbjct: 6 DWDLLQSLHAVLEAGSFSAAARLRRLTQPTLGRHIDQLERQLGAPLFLRSPRGLQATDLA 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +++ + ++ G +R+A + +G +L L F +P I Sbjct: 66 LTLKPHLADMAAAAGAAGRDAAGAADHAGGVVRVAASEIMGAEVLPPILARFREAHPRID 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ + N+ D+S AD A+R+ +P Q ++++ +K+ I YA P YL+ P + Sbjct: 126 VEIAVSNRVEDLSRRDADIAVRMARPTQ-NAIVAKKVGDIGFGFYATPRYLERHGVPDDL 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H LI + P + + RPI I L+ ++ ++ + G GI + Sbjct: 185 DALGAHTLIGYDRSPPPKGIGVD----IGRPITR-DIFALRTDNDVAQLALLKAGFGIGV 239 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I + LV ++ ++ C EAL+ +++A Sbjct: 240 CQHQIGR-RAGLVHVLPGAFQFRLEIWICMHEALRGAPRMRAM 281 >gi|157963014|ref|YP_001503048.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848014|gb|ABV88513.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 297 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 10/265 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F V GSF+ AAE L+++ SS++R I LE + L R R L LTE G Sbjct: 5 MRIFIKVVELGSFSKAAEVLNMAPSSVARNIDSLEQDFNAVLLKRSTRQLLLTEAGELFL 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + ET + L + +P G LRI+ G+ + L +FL YP ++I++ Sbjct: 65 EGARKLVNDEETLKTSLSKRDSQPEGILRISVFEGFGRVKICPILPDFLAQYPKVKIEID 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN+ +D+ + D AIR+ Q SSL R L+ A+ YL P +EL Sbjct: 125 LDNQLVDLHSENVDIAIRIGNA-QDSSLNARMLMANQTSLCASAKYLAQFGTPKKPEELQ 183 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN + L+ + + W ++ P L I++ + GI L Sbjct: 184 HHNCL----LLDRDRQRTYWHFKKGNQYKKVPVQGNLTSRGGTPILEAAIHHGGIVQLSS 239 Query: 247 YIVKD---NPNLVRIMEDVITPSFT 268 ++++D + +LVR + D TPS + Sbjct: 240 WMMEDLIQDGSLVRCLPD-WTPSLS 263 >gi|16273274|ref|NP_439515.1| transcriptional regulator [Haemophilus influenzae Rd KW20] gi|1176210|sp|P43011|Y1364_HAEIN RecName: Full=Uncharacterized HTH-type transcriptional regulator HI_1364; AltName: Full=ORF2 gi|1574196|gb|AAC23011.1| transcriptional regulator, putative [Haemophilus influenzae Rd KW20] Length = 288 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 9/273 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P +I+ + L+ I+ + ++ YP Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYP 272 >gi|71276035|ref|ZP_00652316.1| regulatory protein, LysR:LysR, substrate-binding [Xylella fastidiosa Dixon] gi|71899456|ref|ZP_00681614.1| regulatory protein, LysR:LysR, substrate-binding [Xylella fastidiosa Ann-1] gi|170729682|ref|YP_001775115.1| LysR family transcriptional regulator [Xylella fastidiosa M12] gi|71163118|gb|EAO12839.1| regulatory protein, LysR:LysR, substrate-binding [Xylella fastidiosa Dixon] gi|71730769|gb|EAO32842.1| regulatory protein, LysR:LysR, substrate-binding [Xylella fastidiosa Ann-1] gi|167964475|gb|ACA11485.1| transcriptional regulator (LysR family) [Xylella fastidiosa M12] Length = 301 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 17/280 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +++F V +GSF A E+L L++S+I + I+ LE +G++LF R R +LTE G + Sbjct: 6 DGVQLFVEVVEAGSFAKAGERLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLTEDGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + L++ + +G+L ++ + G++ + L+ + +P ++++ Sbjct: 66 YYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRHCVAPILRTYAREHPQLELE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D D A+R ++L R+L A+P YL +P ++ + Sbjct: 126 LNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKPHTLAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H+L+T+ + W A VD P+ S L+ N I V G Sbjct: 186 LADHDLLTYW----RNDRKMAWTLPDATGALVDIPV----TSRLRCNDLEVIADTAVDGM 237 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276 G+A LP +++ + L+ I D + + +P A Sbjct: 238 GVAWLPYWLLMERMQRGELIGIWGDRPSAVMECHVVWPAA 277 >gi|330819596|ref|YP_004348458.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327371591|gb|AEA62946.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 333 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 11/292 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F V +GSFT AA+ H++ +SR IS LET++ ++L R R + +TE G + Sbjct: 5 ENMRLFVKVVETGSFTKAAQATHVATPQVSRAISSLETQLRVRLLNRTTRRIAVTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ ++ + E ++ PSG+LRI + G+ L L + YP++ I Sbjct: 65 YVAHCREILELVDHAEAEASGAARCPSGRLRIHASSGFGRRYLLPRLARYRETYPEVTID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ + D A+ + + S+LI ++ + A+P YL+ P ++ + Sbjct: 125 LTLAQRMPDLVDEGYDLAVVVASQLDDSALIAERIGNTYSVLCASPAYLRRSGAPATVAD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H + ++P +W +A+ + R VN ++ G GI Sbjct: 185 LHDHVCLQL--MVPNASAG-SWQLEGMASSES-FTPRRQWPFVVNVADAMADALRSGMGI 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP D + +LVR++ S ++ YP K++ F +++ Sbjct: 241 GPLPLSTALDSLRDGSLVRVLPAWRLRSHGIHALYPSRRHLEAKVRTFIDYL 292 >gi|261251441|ref|ZP_05944015.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] gi|260938314|gb|EEX94302.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] Length = 295 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 23/302 (7%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S+IS++I LE +G +L R R +T TE Sbjct: 1 MDWIQSVQSYIRVVDEGSFNGAARKLNTTSSAISKRIHWLEERIGAQLLKRTTRSVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + S P G L+I T+ +G L L +FL +YPD Sbjct: 61 AGALFYERAKVQLDGWQSIVDETRSVSETPVGLLKIGATLAVGSKFLVQYLNDFLKMYPD 120 Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKN 176 I+IQLI +S+D + + + I+ + + K + H YA+P Y+K Sbjct: 121 IRIQLITTTPGQLPALSLD-----LFISREIEQLNSLSFKATPLFEHKAGFYASPDYIKQ 175 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 EP ++++L +HN++ +G+ + ++ T R + + ++ Sbjct: 176 HGEPQNVEQLAQHNMLNWGERTQR-----EYILTNGRKLSLS--GNFATTNPEALFYAAK 228 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GI L D ++K+ L RI+ + VY YP+ + K F + +LK Sbjct: 229 SGMGILLTNDVMIKEELRVGTLKRILPSITADEALVYAYYPKLDYQHTRTKLFLD--YLK 286 Query: 294 AR 295 AR Sbjct: 287 AR 288 >gi|317053419|ref|YP_004119186.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316953158|gb|ADU72630.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 292 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 131/287 (45%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++++ V +GSF+ AA L++ Q ++S+ I+ LE + ++L R GLT TE G + + Sbjct: 7 MQMYVQVVDAGSFSAAARILNIGQPAVSKTIAQLEKHLDVRLLLRTTHGLTPTEAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E +I + + +G LR+A + + +L F+ +P++Q+ ++ Sbjct: 67 ERVRITLQQAEEAEIAARGADKGLTGILRVAAAPTFARLHVIPHLATFMAQHPELQVDIM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ ID+ + D +R+ +Q S + RKL T A A YL P +EL Sbjct: 127 LDDRPIDLISEGIDICLRM-GTLQDSGAVARKLATSRRSALATSEYLSRYGYPQHPRELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H + F L + W + + + L +++ I + GI + D Sbjct: 186 QHEALIFSPL------NDTWQFSRKDEVENVSLQGRLHLSAAEGIRSAVLAHMGITVASD 239 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + + R++ D P ++ +P T K + F F+ Sbjct: 240 WMFSEEITDGTVERLVSDWTLPDIDLWAVFPGGRMATAKARQFAAFV 286 >gi|238763792|ref|ZP_04624750.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] gi|238697922|gb|EEP90681.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC 33638] Length = 303 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 19/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F +G F+ AAEQL LS+S++ + ++ LE + ++LF R R L+LT++G Sbjct: 8 NGIRAFVQAVDAGGFSRAAEQLGLSRSTVGKAVARLEERLSVRLFQRTTRSLSLTDEGRI 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L+ +L +V PSG+LR++ + GQ + L YP ++I+ Sbjct: 68 FYADCVRALAALDAATTQLAARAVAPSGRLRVSLPVLFGQQWVLPVLLTLADKYPALEIE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + N+ +D + D +R+ + + L RKL + Y P QE Sbjct: 128 ALFSNQRVDFAEAGIDLVVRIGETGDAVGLTARKLGEQQQVLCGSTAYFTAYGYPQDWQE 187 Query: 186 LDKHNLIT---FGDLIPKCMED----FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 L +H I G P + D +W++ V R L+ ++ ++ + G Sbjct: 188 LTEHRTIGQLQNGHNEPWRLWDNHGQIHWMSPVSR---------LRFDNLAAVATAVLAG 238 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 G+ALLP ++V D + L I+ P + + Sbjct: 239 QGVALLPRWLVGDALRSGQLQEILPGSTGPGLPINVVW 276 >gi|52426198|ref|YP_089335.1| LysR protein [Mannheimia succiniciproducens MBEL55E] gi|52308250|gb|AAU38750.1| LysR protein [Mannheimia succiniciproducens MBEL55E] Length = 321 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 130/276 (47%), Gaps = 28/276 (10%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ L F AR GSF+ AAE L L+ +++S+ ++ LE + ++LF R R L+LTE+G Sbjct: 10 FNHLISFTHAARFGSFSAAAEALDLTPAAVSKNVALLEQALNVRLFNRTTRSLSLTEEGQ 69 Query: 65 KLHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + + + LE QI L ES + +G +RI+ +G+NL+ LK F YP I Sbjct: 70 VFYAESKKALALLEEAVNQITLAESQ-EIAGNVRISMPNVVGRNLVFPLLKSFNEDYPKI 128 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L DNK ID D +R+ + + SL+ R + I A+P YLK+ P + Sbjct: 129 HLELDFDNKAIDFVKAGFDFVLRVGESSE-GSLVARHIGMIQTCLVASPAYLKSQGVPKN 187 Query: 183 IQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------M 232 + +L +H L+ G L P FN + L +L + Sbjct: 188 MADLPQHQLLMTRLPNGKLQPWT---FNEQGD--------NVHFLHAQPHLVLTDAEMQT 236 Query: 233 QYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITP 265 Q V G GI LP Y+ N LV I+ D P Sbjct: 237 QAAVQGFGITQLPVYLALPYLQNGELVTILNDSYQP 272 >gi|298486065|ref|ZP_07004135.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159413|gb|EFI00464.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 302 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R R L LTE+G+ H Sbjct: 10 IETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + + LE + L +P+G+LRI G+ + F + ++ ++ Sbjct: 70 AVCTRMLADLEAAETALAAQLTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 129 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P + + + R L T + AAP YL+ P + ++L Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGVPTTFEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 H I FG WL D+ E R + L + + + + GIA L Sbjct: 190 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 246 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +++++ LV I+ + T ++ +P ++ K++A Sbjct: 247 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 291 >gi|293606407|ref|ZP_06688767.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292815267|gb|EFF74388.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 298 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 127/288 (44%), Gaps = 17/288 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +AR SF A E+L LS S++S I LE +G+ LF R R + LT+ G +L Sbjct: 9 LAAFAALARHCSFRRAGEELGLSTSAVSYAIRSLEERLGVNLFNRTTRSVALTDAGQRLA 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L E+ SG LRI T+ LL FL YPDI++++ Sbjct: 69 ERLLPALNDLGDALEEMNHFRGSASGTLRINTSRAASYMLLMPMAASFLAAYPDIRLEIA 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +DI D +RL + + + + + A+P Y+ P EL Sbjct: 129 EDDSFVDIVASGFDAGVRLLEAVPEDMVAVQIGPALRAAVVASPDYMAGRPLPRHPDELL 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243 +H + + P + W D E RI+ V++ L + V G GI+ Sbjct: 189 RHECVRY--RFPSGRY-YKWEFEKDGDAIEVDVTGRIALSDVHAEL---RAAVDGIGISC 242 Query: 244 LPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286 +P++ +D + LVR+++D P F +Y YP + + L+AF Sbjct: 243 VPEHYARDGLQSGRLVRMLDDWCPTIPGFMLY--YPRQRRVSSALRAF 288 >gi|289672745|ref|ZP_06493635.1| LysR family transcriptional regulator [Pseudomonas syringae pv. syringae FF5] Length = 304 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 13/273 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F AR+GSFT AA++L +++S++ + I+ LE +G KLF+R R L LT G Sbjct: 13 IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S ++ + L + P G+LRI G++++ L + L P +++ + + Sbjct: 73 CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID+ + D +IR +S L+ R+L AAP Y++ P S ++L +H Sbjct: 133 DSVIDLIEEGVDLSIRFGVLKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192 Query: 190 NLIT---FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 I G + +++ LA + P +V +I+ G GI +P Sbjct: 193 RCIVNYRRGQRVSWTVLDESGELARITPP------GTHEVGDGDAIIAMAAAGQGICQMP 246 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 +++D + LV ++E ++ +P+ Sbjct: 247 GSLIRDHLKDGRLVPVLEKYHPDDVAIHAVWPQ 279 >gi|54308589|ref|YP_129609.1| LysR family transcriptional regulator [Photobacterium profundum SS9] gi|46913018|emb|CAG19807.1| hypothetical transcriptional regulator, LysR family [Photobacterium profundum SS9] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 127/286 (44%), Gaps = 9/286 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + + SFT AA+ L +S++ +S+QI LE +G++L R R LTE G Sbjct: 3 VFNALTKQQSFTRAAQLLDISRTQVSKQIQQLEERLGVQLVQRTTRSFALTEAGRSFSVH 62 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V ++ + EL + G LR+ N + + EF LYP + +++ L Sbjct: 63 CANVVGEINEAESELLSETDSLQGALRVGIAQSFASNHIAPFISEFHDLYPQLDLEMSLF 122 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D I + R L+ + A+P YL P +L H Sbjct: 123 DYRVDLIAEQLDLWIGFMDS-PPEGFVARHLIDCNFLLAASPAYLAKHGVPYHPNDLKGH 181 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248 N IT+ + +D W + + ++ +V+S SI + G+GI L Y+ Sbjct: 182 NCITY---FSRERKDNVWSFRKEEESHQIKVKGNYRVDSADSIRDATLTGNGIGYLATYL 238 Query: 249 VKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +KD L+R+M D +T +Y YP K++ F +FI Sbjct: 239 LKDELQKGQLIRLMPDWDLTQYMPLYAVYPRHKYLPQKVQVFIDFI 284 >gi|148257360|ref|YP_001241945.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146409533|gb|ABQ38039.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 307 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 116/248 (46%), Gaps = 11/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GS + A +L + QS+I+R + LE VG+ L R R +TLT++GS+ + Sbjct: 11 MRSFVRVAERGSLSAVARELGVGQSTITRHLHELEETVGVPLLSRTTRRVTLTDEGSRYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +E E + + PSG +RI+ T G + + F YPDI + L Sbjct: 71 TNCVQILRLIEQAGDEARGTRGAPSGIIRISCTAAFGILHITRLIFAFQDRYPDIAVDLN 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D A+RL P+ SSL R L H A+P YL P + Q+L Sbjct: 131 LTDERIDLVRDGVDIALRL-APLSDSSLKLRSLGHSHRLLVASPDYLARRGTPRTPQDLI 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243 H+ I ++ E L P GE P + + L + + + G GI Sbjct: 190 GHDGIRMTNV--AGSETLVVLG----PDGERHEVPFRGSFRTDHGLGVREAVLSGRGIGG 243 Query: 244 LPDYIVKD 251 ++V D Sbjct: 244 SHAWLVDD 251 >gi|191165213|ref|ZP_03027057.1| LysR substrate binding domain protein [Escherichia coli B7A] gi|190904985|gb|EDV64690.1| LysR substrate binding domain protein [Escherichia coli B7A] Length = 267 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245 >gi|268592418|ref|ZP_06126639.1| transcriptional regulator, LysR family [Providencia rettgeri DSM 1131] gi|291312205|gb|EFE52658.1| transcriptional regulator, LysR family [Providencia rettgeri DSM 1131] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 10/292 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + L F +VA+ SFT AA +L ++ S++S I LE +GI+L R R +++T Sbjct: 2 MKGKMNDLHAFLIVAQEQSFTKAAARLGVTPSALSHTIRLLEERLGIRLLARTTRNVSVT 61 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G++L ++ +++ L E P G +R++ T D + ++ L FL YP Sbjct: 62 EAGAQLMNAIRPLFEQIDIELNALSELRASPRGTIRLSCTDDQIEIYIRPILNNFLQKYP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI I++ +D +I + D IR+ I + R + A A+P Y K +P Sbjct: 122 DITIEIYVDYGFTNIVEERFDAGIRIGDDINKDMIAVRIGPDWRLIAVASPDYFKQHPKP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +L +H I + + W D L NS L + + G Sbjct: 182 LFPNDLSEHQCINIRHRAAGAI--YAWEFKQNDHTTSIKVDGQLVFNSTLHQLNAALDGM 239 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-----CYPEALKNTGKLKAF 286 GIA +P+++ + P + + + ++ YF YP +++ AF Sbjct: 240 GIAYIPEHLAE--PYIAKGKLQAVLIDYSPYFEGFHLYYPNRRQSSPAFMAF 289 >gi|254524366|ref|ZP_05136421.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219721957|gb|EED40482.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 313 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 14/300 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +GSFT A ++ LS+S++ + ++ LE +G +L R R L LT +G++ + Sbjct: 12 ISVFVQAVDAGSFTAAGLRMGLSKSAVGKSVATLERRLGTRLLDRTTRRLALTVEGAEFY 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V + +L+ + +P+G LR++ + GQ + L + +Q+ + Sbjct: 72 QVCRRILAELDEAESRAASRRQEPAGMLRVSLPVAFGQRWVMPILVALAQRHSGLQLDVS 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D A+RL +SSSL R L H AAP YL P + +L Sbjct: 132 FTDRAVDLLEENIDLAVRLGTLAESSSLSARALGHQHSVICAAPAYLAARGVPHDMADLA 191 Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H+ ITF G +P + R G RIS + ++ + G GI Sbjct: 192 GHDCITFGRQGHALPWSTPGPDGTVVRHRIQGRHRISDGE-----ALRSALLAGLGIGEA 246 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 ++V + + LV ++ TPS ++ +P K++A + + FL W+ Sbjct: 247 TTWLVGEELRSGELVGVISADSTPSGPIHAIWPTTRDLAPKVRAAVDALVDAFLPVPPWE 306 >gi|153838439|ref|ZP_01991106.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|149748159|gb|EDM59018.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] Length = 324 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 129/297 (43%), Gaps = 15/297 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GSF AA+ S++S+ I LE+++GI+LF R R + LTE G + Sbjct: 13 LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAGRRYA 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + L+ + SG L+I + G+ ++ LKEF YP I I + Sbjct: 73 NTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +DI D +IR +Q S LI R+L I + YL P + Sbjct: 133 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPSGPDAFN 191 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F G L+P M + + + + P + + VN S+ + C G G+ Sbjct: 192 DHSWVRFRFKQTGKLLPIRMPEPDGTSEYN-----PERNFI-VNDGESMAELCAEGLGLT 245 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +P +I +D LV I + VY Y +++ F +FI +D Sbjct: 246 QIPHFIARDWLKVGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQD 302 >gi|73539649|ref|YP_300016.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72122986|gb|AAZ65172.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 325 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 14/265 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L V+ + GSF+ AA +L +S++S+S+ I+ LE GI L R R TLT+ G Sbjct: 10 WEHLHWLVVLHQQGSFSKAAARLGVSKASMSQHIADLEKAAGIMLVQRTTRSATLTDAGR 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++ T +++ + P G LR+ + + L L EFL YP IQ+ Sbjct: 70 QLVDSMRGAFEQIATGYANVRDLAGAPRGFLRVTAPVAFSRQQLVPRLPEFLRRYPQIQV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + ++ ++ + D A+R + + L A+ YL P S + Sbjct: 130 ELDMSDRLRPLAQEGFDIAVR-HTSAPPETHVAWTLAATRTVLVASRSYLGTRSSPESPE 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWL---------ATVDRPIGEPRISCLQVNSYLSIMQYC 235 L H + + P+ W AT P+ P L VN+ ++ Sbjct: 189 ALVDHACLHY----PRRQGTATWTFVPEAPDEGATHADPVTVPVAGPLAVNNSEALRDAA 244 Query: 236 VLGSGIALLPDYIVKDNPNLVRIME 260 + G GIALLPD+ + R++E Sbjct: 245 IEGLGIALLPDFSAQSALESGRLVE 269 >gi|312173903|emb|CBX82157.1| probable RuBisCO transcriptional regulator [Erwinia amylovora ATCC BAA-2158] Length = 302 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 4/198 (2%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M D+LR F SGSFT AA +LHL+ S++S+ I+ LE +G +LF R R L Sbjct: 1 MPVSEDRLRGITPFVASVESGSFTAAAGRLHLTCSAVSKSIARLEARLGSRLFERTTRSL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT+ G + + V +L + L P G+LR+A G+ + L +F Sbjct: 61 VLTDAGQAFYDTCARVLGELAEAESVLAAQRSMPVGRLRVAVPHTFGRLHVMPLLNDFCQ 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176 +P++Q+ L ++ +D+ + D A+R+ P SL R L + + AAP YL Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGIDVAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180 Query: 177 CREPLSIQELDKHNLITF 194 P S+ +L++H I + Sbjct: 181 HGMPQSLAQLEQHKAIVY 198 >gi|262164509|ref|ZP_06032247.1| transcriptional regulator LysR family [Vibrio mimicus VM223] gi|262026889|gb|EEY45556.1| transcriptional regulator LysR family [Vibrio mimicus VM223] Length = 299 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +FY V GSF+ AEQ L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N+ +D+ D IR ++ SSLI R ++ A+P Y+ +PL ++ Sbjct: 124 MSLENRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182 Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L KHN + + + +F N++ V ++ ++ + + G Sbjct: 183 LVKHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GIA +P +V N LV + + + +Y YP Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272 >gi|54303303|ref|YP_133296.1| transcriptional regulator [Photobacterium profundum SS9] gi|46916733|emb|CAG23496.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 315 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 1/180 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L + V+ GSF AA+ ++ +S +S+QI LE +G++L R R L+LT G ++ Sbjct: 6 RLELLLEVSEHGSFAKAADARNIDRSVLSKQIKNLEDTLGLRLLNRSTRSLSLTTAGYEI 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V +LE T+ +P G LRI+++ G+ +Q +K F+ +P++ ++L Sbjct: 66 VKQAQRVRDELEQTRRLADTFHHEPKGHLRISSSTMFGRIYIQKAIKTFMNKFPEVSVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +LD++ +DI + D R+ P + S+LI RKL H A+ ++ P + QEL Sbjct: 126 VLDDRKVDIIGERFDVVFRIGSP-KDSNLIARKLADNHTAILASEDFVAKHGMPQTPQEL 184 >gi|256022537|ref|ZP_05436402.1| putative transcriptional regulator LYSR-type [Escherichia sp. 4_1_40B] gi|301025372|ref|ZP_07188928.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|307138459|ref|ZP_07497815.1| LysR family transcriptional regulator [Escherichia coli H736] gi|331642408|ref|ZP_08343543.1| putative transcriptional regulator LYSR-type [Escherichia coli H736] gi|299880107|gb|EFI88318.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|323940535|gb|EGB36726.1| LysR substrate binding domain-containing protein [Escherichia coli E482] gi|331039206|gb|EGI11426.1| putative transcriptional regulator LYSR-type [Escherichia coli H736] Length = 314 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 15 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 75 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L + +I + F W L + P L N + Q+C+ G GIAL Sbjct: 194 LSALPCL----VIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIAL 249 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 250 RSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298 >gi|237801606|ref|ZP_04590067.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024466|gb|EGI04522.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 297 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F + +GSF+ AAE+L+ + S+ISR + LE +G +L R R L++T G + Sbjct: 7 IKAFRSLVEAGSFSLAAERLNTTHSTISRHLQQLEHVLGAQLVNRTTRHLSVTSAGEHYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +L+ + + + K G LRI+ + +G L L F YP+I+++L Sbjct: 67 LACIDILDRLDQAALSVSCAGQKLGGSLRISVPMVIGTLELASWLPAFQKRYPEIRLELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D A+R+ + + ++L R L + A+P Y+ P + +L Sbjct: 127 CSDRFVDLVAGGFDLALRIAESLTDTTLAARLLAVSEVRLVASPGYIARHGLPRTANDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RI---SCLQVNSYLSIMQYCVLGSGIAL 243 H L+ F WL T G+P RI L+ +S ++ + GSGIA Sbjct: 187 HHQLLGFSG------SHAEWLLT--SATGQPERIRPAGMLRSDSIAALHAAALAGSGIAA 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D V+ LV I+ D + YP+ + ++AF +F+ Sbjct: 239 FTDITVRQPLAQGQLVTILPDWSLGQRRYHALYPQTRYVSPWVRAFIDFM 288 >gi|218530384|ref|YP_002421200.1| LysR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218522687|gb|ACK83272.1| transcriptional regulator, LysR family [Methylobacterium chloromethanicum CM4] Length = 313 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 26/300 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF VVA + SF AA++L LS++++S+ ++ LE +G +LF+R +R L LTE G Sbjct: 6 DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + +++ P G++R+A + G + L EFL + + Sbjct: 66 RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D +R+ + SSL R+L + A P YL P Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLARYGPPQHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233 ++L + C+ + +L T DR GE P L+ N+ +++ Sbjct: 185 EDLKARS----------CL-GYAYLPTPDRWPFANAAGETVTIVPE-GPLRANNADALVP 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A+ PD+ + ++ L R+M D P + P L ++ A F+ Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292 >gi|149188711|ref|ZP_01867002.1| regulatory protein, LysR [Vibrio shilonii AK1] gi|148837372|gb|EDL54318.1| regulatory protein, LysR [Vibrio shilonii AK1] Length = 296 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 136/296 (45%), Gaps = 17/296 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F GSFT A++QL +S+S +SR I LE +G +L R + L+LT+ G + Sbjct: 7 MRSFISTVEEGSFTGASKQLGVSKSLVSRNIRDLENHLGTRLMNRSTKTLSLTDAGKHYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + KL+T ++ SV SG L + L + +L + EF YP++++ L+ Sbjct: 67 LESNILVTKLDTLNDSIRHDSVAMSGTLNVLAPNGLTEIMLMPFICEFCTRYPEVKVNLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD+ DIS D AIR + Q L+ KL A+P YL+N L +L Sbjct: 127 LDDGVNDISSQGYDVAIRSGNLVKQDLDLVATKLTENQCIVCASPQYLQNHEPILHPTDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 H ++ +L + F + I E I + VNS +I + G+A+ Sbjct: 187 LSHRVVEDPNLKNYSLWRFR------KGIEEHDIEVSPSISVNSVQAIKVALLNHFGVAM 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF----RNFIFL 292 LP + K + L+ ++ + VY Y E + K+K F R F+ L Sbjct: 241 LPRQLAKKEIIDGKLIEVLSHYQLQNRAVYALYRERVNTPRKVKTFIEELRAFLML 296 >gi|306838503|ref|ZP_07471341.1| LysR family transcriptional regulator [Brucella sp. NF 2653] gi|306406370|gb|EFM62611.1| LysR family transcriptional regulator [Brucella sp. NF 2653] Length = 325 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 27 MEIFARIVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 86 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 87 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + AAP YLK P +I++L Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 205 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E N V RP G LQ NS + + + G GIA + Sbjct: 206 DHICLAPHNNDPWRLEGPNG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306 >gi|294677103|ref|YP_003577718.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475923|gb|ADE85311.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB 1003] Length = 309 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 122/271 (45%), Gaps = 11/271 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LRVF VAR+ S + A L +++ R+++ LE VG KLF + +G LT + Sbjct: 1 MDWDDLRVFLAVARAESLSGAGRGLKCDAATVGRRVARLEEAVGAKLFAKSPQGYALTAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++L EL ++ + +G+LRI LL E +P + Sbjct: 61 GARLMPHAEAAEAAFAAATEELSGAAGQITGQLRIGAPDGCANYLLPQVCAEICDSHPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQ++ + ++S AD AI + P + L +KLV +H YL+ L Sbjct: 121 EIQIVALPRVFNLSKREADMAIAVSPP-SAGRLTVQKLVEYQLHLAGHEAYLRRHPPILE 179 Query: 183 IQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H ++ + IP + ++ ++LA E L NS MQ G+G Sbjct: 180 RAQLKGHRIVGY---IPDMIFDKELDYLAQTGASTVE-----LASNSVSVQMQMLRAGAG 231 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271 + ++ D+ + P ++R++ I S + Sbjct: 232 LGIVHDFALPFTPGVLRVLPGDIALSRAFWL 262 >gi|67643828|ref|ZP_00442571.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|121601579|ref|YP_992292.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|166999975|ref|ZP_02265804.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|254175662|ref|ZP_04882322.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254202238|ref|ZP_04908601.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254207571|ref|ZP_04913921.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|121230389|gb|ABM52907.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|147746485|gb|EDK53562.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147751465|gb|EDK58532.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|160696706|gb|EDP86676.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|238525268|gb|EEP88696.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|243064090|gb|EES46276.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] Length = 317 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 2/190 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ + LET +G++L R R L LT +G+ Sbjct: 7 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E + P G++RI + + G++ L L EF YPDI + Sbjct: 67 AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D + +D AIR + S L+ RKL M AP YL+ P + Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184 Query: 185 ELDKHNLITF 194 +LD+HN I Sbjct: 185 DLDRHNCIGL 194 >gi|330890792|gb|EGH23453.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 305 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 134/292 (45%), Gaps = 11/292 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ D+ + DC +R + +L+ R L ++ A+ YL+ PL++ Sbjct: 124 EIGMSDRPADLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPLNLP 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H +I + ++A VD+ + + VNS + C G G+ Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMAGGVEVDQALA----CSISVNSADGYVAACEAGFGL 238 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V LV ++ P + YP + + +++ F +++ Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290 >gi|330874856|gb|EGH09005.1| Transcriptional regulator, LysR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 315 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 36/300 (12%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A+S SF ++ +S S++S+ IS LE VG++LF R R + LT +G Sbjct: 7 LEIFVETAQSQSFVATGRKMGISASAVSKSISRLEVRVGVRLFQRSTRTVRLTSEGEVFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ Q +L + P G+L++ + G L + F+ YPDI++ L Sbjct: 67 ERCRRILSEIQAAQDDLSAMTASPRGRLKVGLALAAGLPL--PVISGFMERYPDIELDLD 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D IR +Q S L+ R L A+P YL+ P+ +L Sbjct: 125 FTDRLVDVIDEGFDVVIR-GSDLQDSRLMSRPLGPYRSCLVASPAYLEKRGTPVKPADLL 183 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV------ 236 H+ + + G L + W P + + LQ + L + C Sbjct: 184 NHSCLHYRWQNSGKL-------YQW------PFKKSML--LQPGTSLPVTMVCSNVEALI 228 Query: 237 ----LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G GI +PD+ V++ + L +++ + + S T + +P + + K++AF +F Sbjct: 229 YLAQAGRGITCVPDFAVEEHVADGRLEKVLSNCLMGSSTFHVVWPSSRQMAPKVRAFVDF 288 >gi|182678742|ref|YP_001832888.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634625|gb|ACB95399.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 297 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 10/273 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA SFT AA +L SQS++S I LE +G++L R R + TE G +L Sbjct: 9 LNAFMTVAEEQSFTRAAAKLGTSQSALSHTIRRLEMRLGVRLLTRTTRSVAPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L E KP+G +RI T+ L L++ L YPDI ++L Sbjct: 69 GTLRPALDSIGAQLTSLGELREKPAGTIRITTSEHAADTTLWPALEKLLPAYPDIHVELS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD+ DI + D +RL + + + R + M +P Y + P + Q L Sbjct: 129 LDSGFADIVTERFDAGVRLGEALAKDMIATRIGPDLRMAVVGSPAYFQTRPIPQTPQSLA 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA-L 243 H I L + + W +++ E R+ L N+ I++ G G+ + Sbjct: 189 DHQCINLRMLSSGGL--YAW--ELEKDGRELRVRVEGQLAFNNVNMIVRAATAGFGLGFV 244 Query: 244 LPDYIVK--DNPNLVRIMEDVITPSFTVYFCYP 274 + D + + L+R++ED P + YP Sbjct: 245 MEDQVTAHLADGRLIRVLEDWCPPFPGYHLYYP 277 >gi|73541313|ref|YP_295833.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118726|gb|AAZ60989.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 303 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/298 (23%), Positives = 139/298 (46%), Gaps = 25/298 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +++VF +A SF+ AAE L + +++++ I LE +G++L R R + +T G Sbjct: 4 FQEMQVFVRIADRRSFSLAAEDLQIPRATVTNLIKRLEQRLGVRLLERTTRQVRMTHDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + +++ P G LR+ L ++ + L EFL YPDI + Sbjct: 64 AYYHRCLRLLTDLEEAENSFRDAP--PKGLLRVNLQGTLARHFVMPALGEFLAQYPDITL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SSLI R++ + A+P YL+ P ++ Sbjct: 122 HVGEDDRLVDLVREGVDCVLRA-GVLQDSSLIGRQIALLEQVTVASPAYLERHGVPNTLD 180 Query: 185 ELDKH---NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYC 235 +L H N ++ P ++ + TVD LQ+ S +S+ Sbjct: 181 DLKHHYAVNYVSSATGRPSALDFYVGEETVD----------LQLTSKISVTGADLYTGAA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G G+ +P Y ++ + L ++ D P V YP+ + + +++ F ++ Sbjct: 231 ISGLGLVQVPRYRIEKELADGRLRIVLPDSPPPRMPVSVLYPQNRQLSARVRVFSQWL 288 >gi|330969985|gb|EGH70051.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 294 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 11/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++L +R R +LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H ET + L+ + SG LR+ GQ ++ L + P + I L Sbjct: 66 PHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L A+P YL +P + EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARHGQPSVLDELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H IT M + ++ P+ NS ++ C G G+A+L + Sbjct: 185 QHPCITL-----HAMPYWPFIRE-GEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYW 238 Query: 248 IVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ +L +I EDVI +V P + +++ F Sbjct: 239 DVQQEIREGSLQQINFEDVIPEQLSVTAVLPTRQRVPHRVRLF 281 >gi|323978019|gb|EGB73105.1| LysR substrate binding domain-containing protein [Escherichia coli TW10509] Length = 307 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFASVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQYGTPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGIWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|304398706|ref|ZP_07380577.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304353653|gb|EFM18029.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 127/297 (42%), Gaps = 6/297 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L+ F VAR GSFT AA L ++Q ++S+ I+ LE + I+L R R ++ T Sbjct: 1 MKRNMNDLQAFITVAREGSFTRAAALLGVTQPALSQTITALENRMEIRLLTRTTRNVSPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + ++E L KP+G +RI + +LL L L YP Sbjct: 61 AAGERLILAIGNRFDEIEAELDMLTAMRDKPAGTVRITCGPHILSSLLLPKLTPLLEAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI+++ ++ +I D D +R+ I + + M A AAP Y + P Sbjct: 121 DIRLEFDANHGLRNIVADRFDAGVRMGDTIDKDMVAMPITPPLRMAAVAAPDYFRRHAAP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L HN I + + W + P+ L N+ I + V G Sbjct: 181 QVPHDLLHHNCINMRQATAGGL--YVWDFDGEEGPVNVRVNGQLTFNTSAHIAEAAVAGL 238 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GIA LP+ V + L+R++E P Y YP +++ R + LK Sbjct: 239 GIAFLPEQEVAEGLEQGTLIRVLERWCQPFPGYYLYYPSRKQHSPAFNLVREALRLK 295 >gi|254510965|ref|ZP_05123032.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] gi|221534676|gb|EEE37664.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] Length = 300 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 15/300 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ +WD LRVF VAR G + A L + +++ R+I+ LE + LF + +G LT Sbjct: 1 MTPNWDDLRVFLAVAREGGLSAAGRVLKIDPATVGRRIARLEVALDAMLFTKSQQGYVLT 60 Query: 61 EQGSKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G +L H + +E + T + S+ SG++RI LL + Sbjct: 61 TAGQRLMDHGLQAEEAMRAATGVMSGSAKSL--SGQIRIGAPDGCANYLLPQVCAQIGDA 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 PD+ IQ++ + I++S AD AI + P L+ +K+ +H A+ YL + Sbjct: 119 NPDLDIQILALPRIINLSRREADMAITVSAPT-GGQLLVKKITDYRLHVVASQTYLNDHA 177 Query: 179 EPLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 ++ +L H +I + IP + D ++L IG R++ L NS +++ Sbjct: 178 PIRTVDDLSAHRMIGY---IPDMIFDRELDYL----NDIGVDRVA-LASNSVSVQLRHAS 229 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+G+ + D+ + +P L +I+ D ++ + Y + + +L F + RD Sbjct: 230 QGAGVCVAHDFTLPFHPGLRKIVTDQVSLTRGFYLVRHQGDQRNERLNRFAEALTRGLRD 289 >gi|148652886|ref|YP_001279979.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571970|gb|ABQ94029.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1] Length = 205 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 16/201 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V GSF+ AA++L L+ S +S++I+ LE + +L YR R L+LT+ G Sbjct: 5 DDMVLFVQVVDDGSFSKAADKLGLTNSVVSKRIARLEESLNTQLLYRTTRKLSLTDAGRT 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPS-------GKLRIATTIDLGQNLLQGNLKEFLLL 118 L YHK + Q QE+ + G +RI + LL + +F Sbjct: 65 L-------YHKAKIAQSAFQEAQNAVTRYGEDMKGLIRITMPVVSANLLLSDAIADFCKK 117 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YPDI ++L + N+ +D+ + D AIR K ++ SSLI R+L+ AAP YLK Sbjct: 118 YPDISVELNITNRLVDLIEEGFDLAIRTAK-LEDSSLIARRLIDSQWIICAAPKYLKQHG 176 Query: 179 EPLSIQELDKHNLITFGDLIP 199 P + +L H + F D +P Sbjct: 177 TPKTHDDLIHHECLMF-DFLP 196 >gi|33592700|ref|NP_880344.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33572346|emb|CAE41903.1| probable LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|332382115|gb|AEE66962.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 295 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 6/268 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 + V+A + SFT AA++L +S+S IS ++ LE E+G+ L R R + TE G+ L Sbjct: 1 MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVRPTEAGALLVER 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + E++ + P G+LR+ + LG+ L L +PDI +++ L Sbjct: 61 ARPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +++ + D A+R + S + + ++L H A+P YL P EL +H Sbjct: 121 DRFVNLRQEGYDFALRHADQV-SDAYVSKRLCATRAHLVASPAYLARHGRPAHPSELARH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + F + + CL VN+ + + G GIA++PD+ + Sbjct: 180 RCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESVAHGLGIAMVPDFSL 239 Query: 250 KDNPNLVRIMEDVITPSFTVYFCYPEAL 277 D +L + + P + Y + +L Sbjct: 240 GDCADL-----EPVLPQWDCYAGFGRSL 262 >gi|86139200|ref|ZP_01057770.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] gi|85824044|gb|EAQ44249.1| transcriptional regulator, LysR family protein [Roseobacter sp. MED193] Length = 314 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 11/252 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V GS + A L +S + S +IS LE +G++LF R R LT TEQG Sbjct: 5 DNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEDYLGVRLFQRTTRNLTATEQGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V ++ + ++ + P G L +A + +G+ L+ ++ FL YP I I+ Sbjct: 65 FYSGAVSVLEAVDQAEAQVMHLTDTPRGTLFVAAPLGVGRRLVAPDVPSFLADYPQINIR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A L +P S+ I RK+ AAP Y+ P ++ Sbjct: 125 LRLSDRTVDLTTEGLDLAFFLGQPADSNLRI-RKIAECQRVLCAAPDYISRHGAPACGED 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 L HN + +L +F W+ ++ G R + + + + + + G G Sbjct: 184 LVNGAHNCL---NLRYPGASEFQWMLQSEQ--GPKRYAVSGRYECDDGDVLTDWALAGEG 238 Query: 241 IALLPDYIVKDN 252 IAL P + V ++ Sbjct: 239 IALKPVFEVAEH 250 >gi|295676129|ref|YP_003604653.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295435972|gb|ADG15142.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 296 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 134/304 (44%), Gaps = 37/304 (12%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++RVF +A SFT AA+ L + +++++ + LE +G +L R R + LT G Sbjct: 4 FEEMRVFVRIAERQSFTRAADDLQIPRATVTNLMKRLEQRLGARLLERTTRTVRLTPDGD 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +E + E S+V P G LR+ L ++ + L FL +PDI++ Sbjct: 64 AHYQRCVRLIADME--EAEGAFSNVAPKGLLRVNVQGTLARHFVVPALPAFLERFPDIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SS++ R++ + A+P YL EP Sbjct: 122 MIGEDDRLVDLVREGIDCVLRA-GVLQDSSMVGRRVAQLQQVTVASPAYLATYGEPADPG 180 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---------RISCLQVNSYLSI---- 231 L H + + V G+P R + L + S +S+ Sbjct: 181 ALSTHRAVNY----------------VSSATGKPLPLEFRIDGRDTALVLPSAVSVSGAE 224 Query: 232 --MQYCVLGSGIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G GI +P Y V D R I+ D P V YP+ + + +++ F Sbjct: 225 LYAGAAIAGLGIVQVPRYRVDDELTAGRLRVILADYPPPPMPVSVLYPQNRQLSSRVRVF 284 Query: 287 RNFI 290 ++ Sbjct: 285 AQWL 288 >gi|254375230|ref|ZP_04990710.1| hypothetical protein FTDG_01421 [Francisella novicida GA99-3548] gi|151572948|gb|EDN38602.1| hypothetical protein FTDG_01421 [Francisella novicida GA99-3548] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 12 FEAFYQLVIHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 72 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + ++ RK+ T A+P Y+ P +I + Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242 L HN I + L + + P S + N+ + ++ CVL GIA Sbjct: 189 LANHNYIPHKSRV-------TLLVNIKKNKLNPETLPSNISANN-IEFIKACVLNDFGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVKD N L+ +++D +Y YP+ K+K F N + Sbjct: 241 QFHEYIVKDEIRNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291 >gi|146311255|ref|YP_001176329.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145318131|gb|ABP60278.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 310 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 8/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F + SGS + AA QL +Q+++SR++ LET +G++L R + LT+ G + + Sbjct: 13 MRTFIRIVESGSLSAAARQLDTTQATVSRRLQSLETLLGVRLLLRTTHAMKLTDDGERCY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + E+ ++ +P G LR+ GQ L L +FL YP + I+ Sbjct: 73 HHARRVLDSWLALEDEVGQAEDEPVGILRVRAPHAFGQEQLLPPLMQFLTRYPQLSIEWK 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D D DCAIR+ + ++ + L + +P L P+ +L Sbjct: 133 LNDRSVDFLSDDIDCAIRVGAEVDPAT-VSVLLAEVPRSVVVSPALLAQFATPVHPDDLS 191 Query: 188 KHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + + +E F + R PR+S +S ++G G+A + Sbjct: 192 ALPWVALSTFYHQHIELFKGGVIEPTRVAISPRLST---DSLYVARNTALMGLGVAAVSS 248 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + V+++ LV ++ D V+ YP + +L+ F Sbjct: 249 WTVEEDIRQGRLVHLLPDWQPSPLPVHLVYPWSRYYPARLRRF 291 >gi|323528774|ref|YP_004230926.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385776|gb|ADX57866.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 39/295 (13%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR GSF AA ++++SR++S LE+ +G++LF R RGL LT++G L+ T Sbjct: 9 FNLVARHGSFGEAARSTERPKATLSRRVSELESSLGLRLFERGPRGLKLTQEGRALYERT 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L + + S +P G+LRI+ Q + + F L YP+I++++ ++ Sbjct: 69 GALLTELAESAAAIASGSEEPRGRLRISAPALFSQLAMGKLVATFALKYPEIRLEVTTED 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQR-----KLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D+ + D IR+ P LI R +LV + A P + Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDERLIGRVFLRDRLVVVARPGLARPKGKSS--------- 178 Query: 186 LDKHNLITFGDLIPKCMEDFN-----WLATVDRPIGEPRISCLQV---NSYLSIMQYCVL 237 +P + N W V P G+ RI+ V +S + + L Sbjct: 179 ------------VPAVLRGGNDPIGAW--DVRGPKGKSRIAIEPVAYLSSLIMVRDTVRL 224 Query: 238 GSGIALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G A LP +V + R+ DV P ++ YP + ++ AF + I Sbjct: 225 GVGAASLPLSLVSHDIAAGRLAHWGDVDGPEIALWALYPSRRLLSPRVSAFLDHI 279 >gi|226941083|ref|YP_002796157.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] gi|226716010|gb|ACO75148.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] Length = 303 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 123/278 (44%), Gaps = 15/278 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + L F VAR GSFT AA L ++QS++S+ ISGLE +GI+L R R ++ T G Sbjct: 5 NLNDLLYFVTVAREGSFTRAASLLGITQSALSQAISGLEARLGIRLLTRTTRSVSPTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L ++E EL KP+G +RI + ++L L L YPDI Sbjct: 65 ERLLDTVGYRLDEIEAGLDELTGMRDKPAGTVRITCGEHVLHSILLPRLAPLLREYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+ ++ DI D D +RL I + + M A+P Y P + Sbjct: 125 IEFDVNYGFRDIVADRFDAGVRLGDSIDKDMIALPISPPLRMAVVASPAYFMEHPMPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238 +L HN I M+ L T D +S L N+ I+ V G Sbjct: 185 SDLLGHNCINM------RMQTAGGLYTWDFGHQGQTLSVRVDGQLVFNTSPGIVDAAVAG 238 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 GIA LP+ + LVR++ED P+F+ Y+ Y Sbjct: 239 LGIANLPEEEFAPHVEAGRLVRVLED-WCPAFSGYYLY 275 >gi|213967024|ref|ZP_03395174.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|301385209|ref|ZP_07233627.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302059602|ref|ZP_07251143.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] gi|302130150|ref|ZP_07256140.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928346|gb|EEB61891.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 305 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AA+ LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFAKAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L+ + + +P G LR+ + LG+ ++ L EF YP +++ Sbjct: 64 AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQVRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL ++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPLQLE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H +I + ++ P + ++C + VNS + C G G+ Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHVLACSISVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y + + LV ++ P + YP + + +++ F +++ Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWL 290 >gi|331662736|ref|ZP_08363659.1| putative transcriptional regulator LYSR-type [Escherichia coli TA143] gi|331061158|gb|EGI33122.1| putative transcriptional regulator LYSR-type [Escherichia coli TA143] Length = 257 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245 >gi|299770703|ref|YP_003732729.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] gi|298700791|gb|ADI91356.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 21/301 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++ F V SGSFT AAE L LS+S +S I LE ++ L R+ R + LT Sbjct: 1 MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEKQLNTSLLIRNTRNIALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + ++ +++ Q +G LR ++T + GQ + L EF LYP Sbjct: 61 EIGQHFYEDFKQIQLQIDEAFERSQHLGTSITGTLRFSSTNEFGQRFILPLLPEFCRLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q + ++ D+ + D IRL +++SSL RK+ ++ A P ++K+ P Sbjct: 121 HLRLQYLFNSSLDDLVTEKLDLVIRLGN-LKNSSLKTRKIGEYPIYLVATPQFIKD--HP 177 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGE----PRI-SCLQVNSYLSIM 232 + N+ D+ NW + + +GE P I S + NS +I Sbjct: 178 I-------ENISDLADVPWIGHTLLNWQDSQYILQNNLGEQYSLPFIRSQYESNSVTAIH 230 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Q + G+A+ P ++V ++ L+R+ D P ++ YP K +AF ++ Sbjct: 231 QMALSSLGVAICPAWLVDEDIQQNRLIRLFPDFSLPLQSIQLLYPHTSNLPAKTRAFIDY 290 Query: 290 I 290 + Sbjct: 291 L 291 >gi|261820152|ref|YP_003258258.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604165|gb|ACX86651.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 301 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 10/295 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + GSF+ AAE+L L ++++S I LE +G++L R R + +T++G + Sbjct: 7 MRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEARLGVRLLQRTTRQVQITDEGRVYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++E + ++P GK+R+ L + ++ L EF YP + + L Sbjct: 67 ERCLQLLAEIEEIDTLFTQQKLQPVGKVRVDMPHSLAREIVVPALGEFYARYPQVTLMLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ I++ + DC +R + +L R L ++ A+ YL P S+ EL Sbjct: 127 ANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQVTCASADYLARYGVPRSLDELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H ++ + L + +++ D I LQVN + + G GI P Sbjct: 186 RHQMVGYFSLRTEYRYPLEFMSG-DECITRMLPGVLQVNGADAYIASARAGLGIIQAPRR 244 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + ++ LV I+ ++ P+ +Y Y G+ A R +F++ D F Sbjct: 245 GLSSLLESGELVEILPEMPPPAMPLYVMY-----TPGRFLAPRIRVFIEWLDELF 294 >gi|77458181|ref|YP_347686.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382184|gb|ABA73697.1| putative LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 291 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 132/284 (46%), Gaps = 8/284 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD RVF V R + AA L + Q+++ R+I+ LE +G LF R + G LT Sbjct: 1 MNWDDARVFLAVCRESTLRGAARVLGVDQATVGRRITALEKSLGATLFLRTSEGYALTAV 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ H + +Q + +G +R++TT L + L + + +PD+ Sbjct: 61 GEAALKSVEKMEHSALELERRIQGLDDRLTGSVRVSTTDSLAIDFLIPAMAQLHEQHPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++QL + + ++ AD A+R +P + LI R++ + +A+ Y+ + P Sbjct: 121 RVQLDASTQILSLAKREADIAVRNTRP-DNPDLIARRIARWPVGLFASQAYVDSHGVPAP 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + H+L+ + ++ L V P+ RI ++S L + + G G+ Sbjct: 180 GSSFEGHDLVVY----EPYLQGNKDLTLVSEPMTRGRI-VAGLSSSLLVRRSIAAGLGVG 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKA 285 +P Y+ + LVR+ + P + V+ L++T +++A Sbjct: 235 EIPVYM-GERDGLVRLWPERTRPLPYEVWLVTHADLRHTARVRA 277 >gi|261251063|ref|ZP_05943637.1| regulatory protein LysR:LysR substrate-binding [Vibrio orientalis CIP 102891] gi|260937936|gb|EEX93924.1| regulatory protein LysR:LysR substrate-binding [Vibrio orientalis CIP 102891] Length = 289 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF +AA +S + + + +S LE +G +L +R R +LTE G + Sbjct: 1 MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGKLYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + +P+G +++ + G+ +L + +FL YPD+ ++LI Sbjct: 61 QECQRIIEDIINAENLIHTLINRPTGTVKVNCPVTYGKKILAPIVADFLTEYPDLNVELI 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID +D IR+ + SSL+ RKL M AAP YL + + +++LD Sbjct: 121 LDNNLIDPYRSDSDVIIRIGDLV-DSSLVARKLGDYEMTYCAAPSYLAKHDQLVCLEDLD 179 Query: 188 KHNLITF 194 +H+ + F Sbjct: 180 QHHCLGF 186 >gi|238797940|ref|ZP_04641431.1| HTH-type transcriptional activator aaeR [Yersinia mollaretii ATCC 43969] gi|238718245|gb|EEQ10070.1| HTH-type transcriptional activator aaeR [Yersinia mollaretii ATCC 43969] Length = 303 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LETE+ +KL R R + LTE G Sbjct: 6 RMSVFARVVECGSFTAAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L + L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLLQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMINFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|91782682|ref|YP_557888.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686636|gb|ABE29836.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 336 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 27/302 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 13 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 72 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EF+ YP+ Sbjct: 73 AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMHRYPE 132 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R P ++++++ R L AP L+ P Sbjct: 133 VRVVMRVTNRVIDLFEDSVDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 192 Query: 181 LSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 L +L++ + GD +N +A P G EPR+ + ++I Sbjct: 193 LLPADLNRFETLDVPTGD----GRHVYNLIA----PDGTRHAHEHEPRLVTADL---MTI 241 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GIA LP+ + L +M P+ +Y + + G + A R Sbjct: 242 REAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVF---VSRQGMVPAVRA 298 Query: 289 FI 290 F+ Sbjct: 299 FV 300 >gi|89076138|ref|ZP_01162496.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] gi|89048148|gb|EAR53732.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] Length = 296 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 126/273 (46%), Gaps = 13/273 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + F VA S F+ AA+QL S S +SRQ+S LE +G+ L R R + LT+ G Sbjct: 4 FDGIIEFVAVAESHGFSSAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRQVNLTDAGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + + L+ L + SG LR++ + + L F YPD+ I Sbjct: 64 LYYQQCRGLVNGLQQASESLNTQQITLSGTLRVSAAGAFAEEHVAPALMAFAKSYPDLTI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +++ ++ D D AIR ++ S L+ RKLV M A A+ YL +P Sbjct: 124 EMDFNSRMVNFIEDGIDFAIRY-GALKDSGLVARKLVDRPMAAVASQDYLTRYGKPTHPS 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L +H+ I + +W+ + R+ + N+ +++ C G GIA Sbjct: 183 QLKQHSCI--------IANNDHWIFEKEGNTINTRVHGRWKSNNSNAVISACEEGLGIAY 234 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 +P + D+ +L+ I++D + + Y Sbjct: 235 MPKSSLAKGLDSGSLIPILQDFWGKGNSSWIVY 267 >gi|325921452|ref|ZP_08183308.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325548094|gb|EGD19092.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 323 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 141/305 (46%), Gaps = 17/305 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F +GS A+ L +S +++S+ I+ LE +G++L +R R L LTE+G+ Sbjct: 7 IRSFVSTVDAGSIAGGAKLLGVSAAAVSQNIARLEQHLGVRLLHRTTRSLALTERGTLYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ LE + + P+G+LR+A+T +++L L YP ++I+L+ Sbjct: 67 EQVRQLERDLERARQSVAGPQQAPAGRLRVASTAAFARHVLAPMLPALRQRYPQLEIELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + + D ++R+ ++ L+ R + + + AAP YL C P + EL Sbjct: 127 CTDRAVQHAQESVDVSLRIEAQLE-DGLVARCIAQVPLVVCAAPEYLVRCGTPQTPDELK 185 Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALLP 245 +H L+ + +C+ +N++ R +P + V+ + ++ G GIA L Sbjct: 186 YQHCLLLRYPVDGRCL-PWNFVRNGVR--FQPELGKAMVSDDIDALATMAAAGGGIARLA 242 Query: 246 DYIVKD-------NPNLV---RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-A 294 Y+V+ P V R +Y C + T K++AF + + + Sbjct: 243 AYVVQPYLQRGQLQPLFVPETRGTTQAAPEPLRIYLCVADRRDFTPKVRAFMDHVLERLP 302 Query: 295 RDWKF 299 +W+ Sbjct: 303 AEWRI 307 >gi|307294328|ref|ZP_07574172.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] gi|306880479|gb|EFN11696.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] Length = 287 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 132/285 (46%), Gaps = 8/285 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V SFT AA+ L +S++++S+ ++ LE + LF R +R L LTE G +L Sbjct: 1 MFAAVVEHRSFTDAAKALSVSKATVSKAVTRLEQHLDTSLFSRTSRRLALTESGKRLADH 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + + + ++ + + SG +R+ ++ G + + EF P + I L L Sbjct: 61 AARILSEGQAAEEAARDETAELSGTVRLGAPMNFGLLRVAPLIAEFTRQNPQVDIDLHLS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID+ D IR+ + SSL R+L +H A+P YL P +L H Sbjct: 121 DARIDMVEMGLDATIRIAD-MPDSSLRARRLADAKLHTIASPAYLDERGRPAHPSDLGSH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + + + + F+ + + RI+ VNS +++ G GIA LPD+I Sbjct: 180 DCLCYSNTQTPDVWRFSGPGQQNVVVQVRARIT---VNSGEAMLPALRAGVGIARLPDFI 236 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V + + L I+ D P ++ P + ++ A +F+ Sbjct: 237 VGEGLASGELEEILVDWRPPPLGIHLVTPPSRLRPARVDAVLDFL 281 >gi|296162467|ref|ZP_06845258.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295887280|gb|EFG67107.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 363 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 27/302 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 40 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 99 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EF+ YP+ Sbjct: 100 AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMHRYPE 159 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R P ++++++ R L AP L+ P Sbjct: 160 VRVVMRVTNRVIDLFEDSVDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 219 Query: 181 LSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 L +L++ + GD +N +A P G EPR+ + ++I Sbjct: 220 LLPADLNRFETLDVPTGD----GRHVYNLIA----PDGTRHAHEHEPRLVTADL---MTI 268 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GIA LP+ + L +M P+ +Y + + G + A R Sbjct: 269 REAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVF---VSRQGMVPAVRA 325 Query: 289 FI 290 F+ Sbjct: 326 FV 327 >gi|145299672|ref|YP_001142513.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142852444|gb|ABO90765.1| transcriptional regulator, LysR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 300 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 9/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SFT AA QL +S + S+ + LE + +L R R + TE G + Sbjct: 7 MRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + +LE T +L ++ +P G L+++ +D G L L F +PD+++++ Sbjct: 67 QRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPDLKLEIE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + + D A+R+ + SSL+ + L + + A+P YL P S ++L Sbjct: 127 YSDRRVALVEEGFDLALRIGN-LPDSSLVAKPLAMMKLEVCASPTYLARRGTPNSPEDLK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H+ + + P + RP G L+ N+ +++ + GI L P + Sbjct: 186 QHDCLIYTLTQPDWVFKQGGEQLSVRPQGP-----LRANNGVALTRAACDHQGIILQPTF 240 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IV D + LV ++ + +Y YP +GK++ F F+ Sbjct: 241 IVGDALRSGELVPLLPEWEKGQVGLYALYPHRRFVSGKVRCFIEFV 286 >gi|38704018|ref|NP_310535.2| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. Sakai] gi|157159337|ref|YP_001463099.1| LysR family transcriptional regulator [Escherichia coli E24377A] gi|170681592|ref|YP_001743447.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5] gi|189405089|ref|ZP_02813218.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|189406052|ref|ZP_02826045.2| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|193071305|ref|ZP_03052224.1| transcriptional regulator, LysR family [Escherichia coli E110019] gi|194439627|ref|ZP_03071699.1| transcriptional regulator, LysR family [Escherichia coli 101-1] gi|208810425|ref|ZP_03252301.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|209395982|ref|YP_002270876.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|217328689|ref|ZP_03444770.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|218554371|ref|YP_002387284.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218699633|ref|YP_002407262.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218705297|ref|YP_002412816.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|253773247|ref|YP_003036078.1| LysR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161858|ref|YP_003044966.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|254793421|ref|YP_003078258.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|260855658|ref|YP_003229549.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O26:H11 str. 11368] gi|260868318|ref|YP_003234720.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O111:H- str. 11128] gi|293405296|ref|ZP_06649288.1| tartrate dehydrogenase/decarboxylase/D-malic enzyme regulator protein [Escherichia coli FVEC1412] gi|293410108|ref|ZP_06653684.1| conserved hypothetical protein [Escherichia coli B354] gi|297517045|ref|ZP_06935431.1| LysR family transcriptional regulator [Escherichia coli OP50] gi|298380938|ref|ZP_06990537.1| HTH-type transcriptional regulator yeaT [Escherichia coli FVEC1302] gi|300823145|ref|ZP_07103278.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300899037|ref|ZP_07117324.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300904662|ref|ZP_07122497.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300924864|ref|ZP_07140798.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300927876|ref|ZP_07143437.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|300938857|ref|ZP_07153563.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|301305895|ref|ZP_07211978.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|301327556|ref|ZP_07220776.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|307314123|ref|ZP_07593735.1| transcriptional regulator, LysR family [Escherichia coli W] gi|309794175|ref|ZP_07688599.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|331663287|ref|ZP_08364197.1| putative transcriptional regulator LYSR-type [Escherichia coli TA143] gi|331668487|ref|ZP_08369335.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] gi|331683301|ref|ZP_08383902.1| putative transcriptional regulator LYSR-type [Escherichia coli H299] gi|157081367|gb|ABV21075.1| transcriptional regulator, LysR family [Escherichia coli E24377A] gi|170519310|gb|ACB17488.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5] gi|189371986|gb|EDU90402.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC869] gi|189376736|gb|EDU95152.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC508] gi|192955400|gb|EDV85884.1| transcriptional regulator, LysR family [Escherichia coli E110019] gi|194421448|gb|EDX37463.1| transcriptional regulator, LysR family [Escherichia coli 101-1] gi|208724941|gb|EDZ74648.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4206] gi|209157382|gb|ACI34815.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4115] gi|217318036|gb|EEC26463.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. TW14588] gi|218361139|emb|CAQ98722.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218369619|emb|CAR17388.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218432394|emb|CAR13284.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|242377520|emb|CAQ32274.1| DmlR DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324291|gb|ACT28893.1| transcriptional regulator, LysR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973759|gb|ACT39430.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977953|gb|ACT43623.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|254592821|gb|ACT72182.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|257754307|dbj|BAI25809.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O26:H11 str. 11368] gi|257764674|dbj|BAI36169.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O111:H- str. 11128] gi|284921718|emb|CBG34790.1| LysR-family transcriptional regulator [Escherichia coli 042] gi|291427504|gb|EFF00531.1| tartrate dehydrogenase/decarboxylase/D-malic enzyme regulator protein [Escherichia coli FVEC1412] gi|291470576|gb|EFF13060.1| conserved hypothetical protein [Escherichia coli B354] gi|298278380|gb|EFI19894.1| HTH-type transcriptional regulator yeaT [Escherichia coli FVEC1302] gi|300357337|gb|EFJ73207.1| LysR substrate binding domain protein [Escherichia coli MS 198-1] gi|300403412|gb|EFJ86950.1| LysR substrate binding domain protein [Escherichia coli MS 84-1] gi|300418970|gb|EFK02281.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300456216|gb|EFK19709.1| LysR substrate binding domain protein [Escherichia coli MS 21-1] gi|300464065|gb|EFK27558.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|300524299|gb|EFK45368.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300838821|gb|EFK66581.1| LysR substrate binding domain protein [Escherichia coli MS 124-1] gi|300845866|gb|EFK73626.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|306906261|gb|EFN36778.1| transcriptional regulator, LysR family [Escherichia coli W] gi|308122080|gb|EFO59342.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|315061102|gb|ADT75429.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315257390|gb|EFU37358.1| LysR substrate binding domain protein [Escherichia coli MS 85-1] gi|320188495|gb|EFW63157.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme [Escherichia coli O157:H7 str. EC1212] gi|320197978|gb|EFW72586.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme [Escherichia coli EC4100B] gi|323152960|gb|EFZ39229.1| hypothetical protein ECEPECA14_5043 [Escherichia coli EPECa14] gi|323175124|gb|EFZ60738.1| hypothetical protein ECLT68_0221 [Escherichia coli LT-68] gi|323180578|gb|EFZ66123.1| hypothetical protein ECOK1180_0567 [Escherichia coli 1180] gi|323186454|gb|EFZ71802.1| hypothetical protein ECOK1357_0224 [Escherichia coli 1357] gi|323378323|gb|ADX50591.1| transcriptional regulator, LysR family [Escherichia coli KO11] gi|323948316|gb|EGB44304.1| LysR substrate binding domain-containing protein [Escherichia coli H120] gi|323961853|gb|EGB57452.1| LysR substrate binding domain-containing protein [Escherichia coli H489] gi|323972694|gb|EGB67897.1| LysR substrate binding domain-containing protein [Escherichia coli TA007] gi|324118859|gb|EGC12748.1| LysR substrate binding domain-containing protein [Escherichia coli E1167] gi|326342174|gb|EGD65955.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme [Escherichia coli O157:H7 str. 1044] gi|326343724|gb|EGD67486.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme [Escherichia coli O157:H7 str. 1125] gi|331059086|gb|EGI31063.1| putative transcriptional regulator LYSR-type [Escherichia coli TA143] gi|331063681|gb|EGI35592.1| putative transcriptional regulator LYSR-type [Escherichia coli TA271] gi|331079516|gb|EGI50713.1| putative transcriptional regulator LYSR-type [Escherichia coli H299] gi|332089916|gb|EGI95016.1| hypothetical protein SB521682_2027 [Shigella boydii 5216-82] gi|332096424|gb|EGJ01421.1| hypothetical protein SB359474_1438 [Shigella boydii 3594-74] Length = 307 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|311105114|ref|YP_003977967.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310759803|gb|ADP15252.1| LysR substrate binding domain protein 1 [Achromobacter xylosoxidans A8] Length = 308 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 129/296 (43%), Gaps = 21/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F V AR SFT AA++L ++Q ++S+Q+ LE VGI+LF R +GL LTE G Sbjct: 11 LQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGIELFLRIRQGLVLTEAGRSYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++E +EL + G L + G L L F+ L PDI ++ + Sbjct: 71 TKIQAGLGQIEAATVELIAHQGQ-GGTLNLTCMPTFGARWLIPRLTAFMRLRPDIHVEFL 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLK-NCREPLS 182 + D S D A+R + I S ++ R+++ + +P + C P Sbjct: 130 PHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGREILPV-----CSPRLIPGGCATP-- 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L + L+ + + F R + + + Y + Q G G+A Sbjct: 183 -ADLLAYPLLHHTSALDGWRDWFEQAGCDTR----RSLEGARFDQYALLSQAAAAGFGVA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L+P +++D + L ++ I Y CYPE N L+AFR ++ +R Sbjct: 238 LIPRCLIEDELRDGKLAVAIQLPIRARMGYYLCYPEQKANLPTLQAFRTWLMEVSR 293 >gi|170699001|ref|ZP_02890059.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170136108|gb|EDT04378.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 295 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 13/250 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA SF AA +L++S SS +R + G+E +G +L R R L+LT+ G H Sbjct: 7 MRLFIKVAELHSFARAATELNISNSSATRLVMGIEDRLGARLLNRTTRSLSLTDAG---H 63 Query: 68 RVTSEVYHKLETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +++ H +E +I+ E ++ +P G L+IA + G ++L + F L+P I Sbjct: 64 LYLAQIRHVIE--EIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ +D+ D + L + I +++L+ R L + AAP Y++ P+ Sbjct: 122 VPEVTIVDRHVDLVSGGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIH 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H +TF + T R P S N L I + + G GIA Sbjct: 182 PHDLASHACLTFHADFAGEYRSSDHEPT--RVAVRPNKSASSNNIGL-IRNWALSGMGIA 238 Query: 243 LLPDYIVKDN 252 +LPD++V+ + Sbjct: 239 VLPDFLVESD 248 >gi|163851575|ref|YP_001639618.1| LysR substrate-binding [Methylobacterium extorquens PA1] gi|163663180|gb|ABY30547.1| LysR substrate-binding [Methylobacterium extorquens PA1] Length = 313 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 26/300 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF VVA + SF AA++L LS++++S+ ++ LE +G +LF+R +R L LTE G Sbjct: 6 DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + +++ P G++R+A + G + L EFL + + Sbjct: 66 RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D +R+ + SSL R+L + A P YL+ P Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERYGPPQHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233 ++L C+ + +L T DR GE P L+ N+ ++ Sbjct: 185 EDLKAR----------ACL-GYAYLPTPDRWPFTNAAGETVTIVPE-GPLRANNADALAP 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A+ PD+ + ++ L R+M D P + P L ++ A F+ Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292 >gi|193066353|ref|ZP_03047402.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|260844143|ref|YP_003221921.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O103:H2 str. 12009] gi|192926001|gb|EDV80646.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|257759290|dbj|BAI30787.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O103:H2 str. 12009] gi|323158720|gb|EFZ44734.1| hypothetical protein ECE128010_5178 [Escherichia coli E128010] Length = 307 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|226945600|ref|YP_002800673.1| LysR family transcriptional regulator protein [Azotobacter vinelandii DJ] gi|226720527|gb|ACO79698.1| LysR family transcriptional regulator protein [Azotobacter vinelandii DJ] Length = 297 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 119/274 (43%), Gaps = 8/274 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +L VAR SFT AA QL +SQS +S I GLE +G++L R R +++TE G Sbjct: 6 YSELLALIAVARERSFTRAAAQLGISQSMLSHTIRGLEARLGVRLLTRTTRSVSVTEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L RV + +E+ + E S +G +RI T LL L E L YP I++ Sbjct: 66 RLLRVVAPRLKDIESELRHVAELSETAAGTIRITATEHAIDTLLWPKLSEILPAYPKIKV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L D DI D +RL + S R + AP Y + P Q Sbjct: 126 ELNSDYALTDIVQGRYDFGVRLGDGLTRDSSAVRIAPDLQFAIVGAPSYFASRAMPDKPQ 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H I +P + W + R+ L N I+ + G G+A Sbjct: 186 DLANHECINL--RLPTRGNLYAWELKKSQSESNVRVEGQLVFNGIYQILNAALSGFGLAY 243 Query: 244 LPDYIVK---DNPNLVRIMEDVIT--PSFTVYFC 272 +P+ + + ++ L+ +M+ P + +Y+ Sbjct: 244 VPEDLARPHLESGRLLPVMKSWWRKFPGYHLYYS 277 >gi|312960406|ref|ZP_07774915.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311285291|gb|EFQ63863.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 310 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 88/187 (47%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F V GSF+ A + L+ SSISRQI +E +G +L YRH R +T TE G L Sbjct: 12 LRLFVAVLDHGSFSEVARREGLAPSSISRQIQLMEQALGQQLLYRHTRAVTPTEAGRLLG 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R V +LE LQE +PSG +RI + GQ L L E YP +Q+ + Sbjct: 72 RHARVVLEQLEAASQALQEQEREPSGLVRINAPMVFGQRHLSPWLGELCRRYPKLQLDIQ 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D D D R+ + SS+ R A+P YL P EL Sbjct: 132 QTDTFVDPLQDGTDLLFRI-GVLNDSSMQARIFAPQRFRIAASPAYLARHGTPRHPDELS 190 Query: 188 KHNLITF 194 +H+ + + Sbjct: 191 EHHCLAY 197 >gi|239831902|ref|ZP_04680231.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239824169|gb|EEQ95737.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 308 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 20/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SF+ AAE+L L+Q ++SRQI+ LE ++G LF R +R + L++ G Sbjct: 15 LAAFDAVARHESFSAAAEELSLTQGAVSRQIATLEEQLGTALFDRTSRHVVLSDAGRAYL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V + LQ S L +A G L + F+ YPDI + Sbjct: 75 KVVGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAKYPDIILNFA 132 Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 D + D AI + +P S L+ + + A+ H ++ P + Sbjct: 133 TRIGQFDFDREGLDAAIHIGQPDWPNADSVFLMDETVAPVCSPAFLQQHPVQ---APTDL 189 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L N+ + P + +W ++D I P ++ + ++ Q C+ G G+AL Sbjct: 190 LPLPLFNMAS----RPGAWD--HWFKSLD--IAAPVSPGMRFEQFSNVSQACIAGLGVAL 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P ++++ +N LV + + YF P+A +T + AFR+++ Sbjct: 242 MPLFLIRAEIENGQLVVACPHTVRSPSSYYFVTPKARSSTPAVSAFRDWLL 292 >gi|239503529|ref|ZP_04662839.1| LysR substrate binding domain protein [Acinetobacter baumannii AB900] Length = 296 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V G+F+ AA L +S+ +++++ LE ++ L R R + LT G K Sbjct: 5 DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTSCGEK 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + E E+ + P G+L++ T + LQ + +F+ YP I+I Sbjct: 65 FYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D++ D IRL + SL K++ T + YA P Y P S++ Sbjct: 125 LFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLPTSLE 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240 EL +H LI + D K + + E +C V N+ ++ C+ G Sbjct: 183 ELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP++I + L + +ED + +Y +P + K+K F +F+ Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288 >gi|229591640|ref|YP_002873759.1| LysR family transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229363506|emb|CAY50742.1| LysR-family transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 307 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 5/279 (1%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V+ GSFT AAE+++L+ S+IS+ I+ LE +G++LF R R L+LT+ G +R Sbjct: 12 VFVCVSDHGSFTAAAEKMNLTASAISKSIARLEKRLGVRLFQRTTRRLSLTDAGVAFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + V LE ++ L + + G++RI LG+ + L FL +P + Sbjct: 72 CTGVLADLEEAELLLHVENTEARGRVRIDLPSALGRAQVLPVLLPFLQAHPLLLAHFTFG 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQELDK 188 + I+ + D +R+ + ++++ H+ YA+P YL PLS +L+ Sbjct: 132 DGFIEPFEEGVDIVVRIGGTNAWPETVGQRVLAHEWHSLYASPVYLSRHGTPLSEHDLEH 191 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 H I +G + +N+ P L V + ++ + G GI LP ++ Sbjct: 192 HQCIAYG-WVDGRTSPWNFADEQGAPRRRQITPQLVVGNGDGLLMAALAGCGIVQLPSWM 250 Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 V+ LV ++ + T + + ++ + K++ Sbjct: 251 VQQPLQEGTLVEVLPHLATQGAAITLGWVKSRQALPKVR 289 >gi|153832286|ref|ZP_01984953.1| LysR family transcriptional regulator [Vibrio harveyi HY01] gi|148871597|gb|EDL70452.1| LysR family transcriptional regulator [Vibrio harveyi HY01] Length = 305 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 131/268 (48%), Gaps = 15/268 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W +R F VA GSFT AAE + S++++S+ +S LE+ +G++L YR R L LTE Sbjct: 3 NLSWRGIRAFIYVAECGSFTSAAEAMGASKANVSQLVSELESSLGVQLLYRTTRQLRLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120 G R E +L+ Q+++ + G++ + + +G+ L+ + F YP Sbjct: 63 IGDGYFRKCKEAMLQLDAAAEWAQQTTSEIKGRIHMNSVGGPIGEELIAPLVMSFQSAYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++++L +D+ D D +R+ + + S+LI R+L T+ H A+P +L+ + Sbjct: 123 NVEVELDFSKHRVDLIEDSYDLVLRVGE-MPDSTLIARRLTTLRTHYVASPDFLERHPKI 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL----------ATVDRPIGEPRISCLQVNSYLS 230 L ++L LI G + M++ N A R + +S L V Sbjct: 182 LIPEDLKALPLI-HGSVDHWIMKNHNEQRIINVGQGIKAATGRTMRHAAVSGLGVTRLTD 240 Query: 231 IMQYCVLGSG--IALLPDYIVKDNPNLV 256 + + L SG I +LP++ K +LV Sbjct: 241 VYCHADLASGRLIEVLPEWSEKTLLSLV 268 >gi|148256066|ref|YP_001240651.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408239|gb|ABQ36745.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 291 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 121/279 (43%), Gaps = 23/279 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F VA SFT AA +L +S S++S I LE + ++L R R + TE G +L Sbjct: 4 LAMFLAVAEERSFTRAAAKLGVSPSALSHAIRRLEQRMDVRLLTRTTRSVAPTEAGERLM 63 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ L E +P+G +RI T+ + LL + + YPDI+++L Sbjct: 64 ETVAPAFDEIDARIAALTELRSRPAGTVRITTSEHAARTLLWPAIDRIVADYPDIKVELN 123 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + DI + D +RL + ++ + R + M +P YL C P S +L Sbjct: 124 VQSGLTDIVAERFDAGVRLGERLEQDMVAVRIGPRLRMATVGSPAYLAKCGAPKSPDDLT 183 Query: 188 KHNLITFGDLIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +H I ++ + + W VD P+ +N I+ G Sbjct: 184 RHACINL-RMVNGSI--YQWEYGRGGRELKVKVDGPV--------VLNDVDLIVAAASAG 232 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G+A L D V LVR+++D P Y YP Sbjct: 233 HGLAHLVDDRVAPLLAKGALVRVLDDWCEPFDGYYLYYP 271 >gi|152998799|ref|YP_001364480.1| LysR family transcriptional regulator [Shewanella baltica OS185] gi|307306147|ref|ZP_07585892.1| transcriptional regulator, LysR family [Shewanella baltica BA175] gi|151363417|gb|ABS06417.1| transcriptional regulator, LysR family [Shewanella baltica OS185] gi|306911020|gb|EFN41447.1| transcriptional regulator, LysR family [Shewanella baltica BA175] Length = 307 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 134/288 (46%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F VA SFT A+ L LS++ +S ++ ET +G +L R R + LT+ G + Sbjct: 8 MQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + Q + + SG+LR+ + + +NL+ L EF+ YP I+++L Sbjct: 68 ERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVLPKLAEFIEQYPHIELELS 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-- 185 ++ +D+ + DC IR+ +Q LI +KL M +P Y+ +P S+++ Sbjct: 128 STDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKLGHFKMLNCVSPAYIAKYGKPESLEDLT 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H L+ + + F + + I P++ + VN+ + C+ G GI Sbjct: 187 LQNHKLVHYVSQLGGTDSGFEYQDPHTHQGNLTIQLPKL--ITVNNADAYSSACLAGLGI 244 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P V LV I+ + P +V YP + +L+ F Sbjct: 245 IQVPSIGVAKYLHTGELVEILPNYPAPPMSVSLLYPHRRHLSKRLQVF 292 >gi|226945308|ref|YP_002800381.1| transcriptional regulator LysR family protein [Azotobacter vinelandii DJ] gi|226720235|gb|ACO79406.1| Transcriptional regulator LysR family protein [Azotobacter vinelandii DJ] Length = 297 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 16/288 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F V R GSFT AA L ++ S++S + LE +G++L R L+ TE+G Sbjct: 6 FNDILAFVHVVREGSFTRAAALLGVTPSALSHAVRALEARLGVRLLTHTTRRLSTTEEGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++ ++E KP+G +RI + ++L L + L YPDI + Sbjct: 66 RLFVNVLPHFEGIDAELAAVEELRDKPAGTIRITSAEHAANSVLWPKLSKVLHEYPDINV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +D DI D +RL + + R + + +P Y P + Sbjct: 126 EVSVDYALSDIVSQRYDAGVRLGNQVAKDMIAVRIGPDLRIAVVGSPGYFAQRPVPATPH 185 Query: 185 ELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +L HN I T G L+P W D + R+ N+ SI++ + G Sbjct: 186 DLAGHNCINLRLPTHGGLLP-------WDFAKDGQEVKFRVGGQWTFNNSSSIVKAALAG 238 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 G+A +P+ +V D L+R+++D P + YP +++ L Sbjct: 239 YGLAFVPEDMVLEHIDAGRLIRVLDDWCDPYPGYHLYYPNRRQSSRAL 286 >gi|260549183|ref|ZP_05823404.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407911|gb|EEX01383.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 14/292 (4%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ F++ VA+ SF+ A +L L +S+++ I LET G++LF+R R ++LT+ Sbjct: 2 DRLQQFFIFTEVAKRQSFSEVAHRLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + E + +Q G L+I+ + ++ L +F YPDI Sbjct: 62 GQRILPECQNLLLDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELSDFYHRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + D+ DC +R+ + + SSSLI R + + M A+ YL+ P Sbjct: 122 HLQLNSSDDMTDLIEKGIDCVVRVGE-LDSSSLIARFIGHLVMVNCASRGYLEQYGMPEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 +++L +H LI + + + +F + G + S L VN+ + G GI Sbjct: 181 LEDLSQHKLINYVGAVGEKQGEFVYQG------GSVMMDSALSVNNTEAYSAAACAGLGI 234 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y V+D LV ++ PS + YP +L+ F N++ Sbjct: 235 IQVPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRTYIPKRLEVFMNWV 286 >gi|240138742|ref|YP_002963214.1| transcriptional regulator, LysR family [Methylobacterium extorquens AM1] gi|240008711|gb|ACS39937.1| transcriptional regulator, LysR family [Methylobacterium extorquens AM1] Length = 320 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 26/300 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF VVA + SF AA++L LS++++S+ ++ LE +G +LF+R +R L LTE G Sbjct: 6 DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + +++ P G++R+A + G + L EFL + + Sbjct: 66 RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D +R+ + SSL R+L + A P YL+ P Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERHGPPQHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233 ++L C+ + +L T DR GE P L+ N+ +++ Sbjct: 185 EDLKAR----------ACL-GYAYLPTPDRWPFTNAAGETVTIVPE-GPLRANNADALVP 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A+ PD+ + ++ L R+M D P + P L ++ A F+ Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292 >gi|152981601|ref|YP_001353561.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151281678|gb|ABR90088.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 300 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 134/292 (45%), Gaps = 17/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F VA G+FT AA +L +SQS++S I LE +G+ L R R ++ TE G Sbjct: 5 DLSDLAAFATVAEEGNFTRAAARLGMSQSALSHAIKALEQRIGLPLLTRTTRSVSTTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L R + L + S P G +RI T + L+Q L F+ YP+I Sbjct: 65 ERLLRTLRPALDGITAELASLSDLSETPRGVVRITTDQIAARWLIQPVLARFVEQYPNIT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ D+ +I D D +RL + I+ + R + + A+P YL N PLS Sbjct: 125 VEVNNDDGLTNIVADRFDAGVRLGELIEQDMISVRIGPDVKVAIVASPAYLANRGLPLSP 184 Query: 184 QELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237 Q+L H L T G L + W T + + E R+ + + ++ VL Sbjct: 185 QDLKNHRCLNYRLATAGGL-------YAWEFTRNGRMIEVRVDGPLIFNDWTLSYAAVLE 237 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+GI ++ V+ + LVR+++D +P+F Y Y + T L A Sbjct: 238 GAGIGYCFEHQVEQDIADGRLVRMLQD-WSPTFHGYHLYFPDRRRTPALSAL 288 >gi|153832005|ref|ZP_01984672.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] gi|148872003|gb|EDL70826.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] Length = 291 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF +AA +S + + + +S LE +G +L +R R +LTE G + Sbjct: 7 MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGRLYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +Q +P+G +++ + G+ ++ + +FL +PD+ ++L+ Sbjct: 67 QECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPDLNVELM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID AD IR+ + + SSL+ RKL HM A+P YL+ S+++L+ Sbjct: 127 LDNNLIDPYRSEADVIIRIGELV-DSSLVARKLGEYHMTYCASPSYLEQHEPIQSLEDLE 185 Query: 188 KHNLITF 194 H+ + F Sbjct: 186 HHHCLGF 192 >gi|94500748|ref|ZP_01307277.1| Putative transcriptional regulator, LysR family protein [Oceanobacter sp. RED65] gi|94427070|gb|EAT12051.1| Putative transcriptional regulator, LysR family protein [Oceanobacter sp. RED65] Length = 296 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 25/296 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L + SGS T AA L + + +SR IS LE E+ L R R L LTE+G Sbjct: 8 EDLEILLATIDSGSLTGAANALDIQVARVSRAISRLEAELDCSLLNRTTRKLELTEEGRV 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L + L++ +P+G LR+ + + L EF + +P I+++ Sbjct: 68 FSERVRQALQHLSHAESTLRDLKEQPAGILRVDAVTPFMIHQIIPLLPEFRIQFPLIELE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ ID+ D AIR+ P++ S+L R L + A+ Y++ P SI E Sbjct: 128 LVSSENIIDLIERRTDIAIRI-GPLKDSNLHARPLGRSPLSIVASHDYIERFGAPSSINE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSG 240 L HN+I F + NW PIG EP I N L I C+ G G Sbjct: 187 LANHNIIGFA----QSPHLNNW------PIGTGINIEPDIKS--SNGEL-IRHLCLEGQG 233 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG---KLKAFRNFI 290 +ALL +++K+ N L+ ++ +T + KNT ++ AF +FI Sbjct: 234 LALLSHFMIKEDLKNNRLIEVLPGSVTQNNNRERVNAVFYKNTALSSRILAFLDFI 289 >gi|91788928|ref|YP_549880.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gi|91698153|gb|ABE44982.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 338 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 136/307 (44%), Gaps = 11/307 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D L + V GS T AA L ++ ++++++ LE +G +LF R R ++ T + Sbjct: 1 MDRSDLELVLAVREHGSLTAAALSLDVAPPVVTKRLAALEARLGQRLFQRTTRRVSATAE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ELQE +P+G +R+A T G+ L L +F YP I Sbjct: 61 GETMCERALALLQGFTALEAELQERQSEPTGLIRLAATFGFGRLWLGPALADFQERYPRI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +IQL L + D++ D AI L + Q++ + R+L A+P Y++ P Sbjct: 121 EIQLQLTEQLPDLAEGGFDGAIWLWEVEGRQAAQWVSRRLARNQRVLVASPRYIRQHGAP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236 S+++L +H + + + F+ W +R R+ L NS + +CV Sbjct: 181 ASLEDLQRHTCLIVRENGNATGQRFDVWPLHKEREKTPARVRVRGPLSSNSGELVRDWCV 240 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-- 291 G GI L + + + LVR++ P +++ P + +++ +F+ Sbjct: 241 EGRGIMLRSLWDIAPQLASGELVRVLPGYAMPDADIHWLAPFRPDSPRRIRLLVDFLLAQ 300 Query: 292 LKARDWK 298 + WK Sbjct: 301 FQGAPWK 307 >gi|323968566|gb|EGB63972.1| LysR substrate binding domain-containing protein [Escherichia coli M863] gi|327252920|gb|EGE64574.1| hypothetical protein ECSTEC7V_2165 [Escherichia coli STEC_7v] Length = 307 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQYGTPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGIWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|300717146|ref|YP_003741949.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661] gi|299062982|emb|CAX60102.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661] Length = 297 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 13/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L +V++ SFT AA +L +SQS++S I GLE + +L R R + TE G Sbjct: 5 NFNDLIYLVMVSKEKSFTRAAAKLGVSQSALSHSIRGLEERLQTRLLTRTTRSVAATEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +E + + ++ SG +RI + L LK FL YP+++ Sbjct: 65 ERLIDSVGPLIADIEKALLHITDNVGSVSGNIRITAGEHALSSTLWPLLKPFLQAYPEVK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L +DN DI D +RL + I+ + R M A+P YL P + Sbjct: 125 VELSVDNTLTDIVSGRFDAGVRLGESIEKDMVAVRIGPNWRMAVVASPDYLAKYGRPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 +L HN + +P ++W + D E R+ L N+ S + + G G Sbjct: 185 YQLQDHNCMNM--RLPTLGGLYSWEFSKDGK--EIRVKVEGQLIFNNLASRIDAALSGMG 240 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA +P+ V+ + N L ++++ P Y YP ++T AF I Sbjct: 241 IACVPEDTVQHHINEGRLESLLDEWCEPFSGYYLYYPSRKQHTA---AFSKLI 290 >gi|260555324|ref|ZP_05827545.1| transcriptional regulatory protein [Acinetobacter baumannii ATCC 19606] gi|260411866|gb|EEX05163.1| transcriptional regulatory protein [Acinetobacter baumannii ATCC 19606] Length = 296 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V G+F+ AA L +S+ +++++ LE ++ L R R + LT G K Sbjct: 5 DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTSCGEK 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + E E+ + P G+L++ T + LQ + +F+ YP I+I Sbjct: 65 FYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D++ D IRL + SL K++ T + YA P Y P S++ Sbjct: 125 LFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLPTSLE 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240 EL +H LI + D K + + E +C V N+ ++ C+ G Sbjct: 183 ELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP++I + L + +ED + +Y +P + K+K F +F+ Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288 >gi|206579234|ref|YP_002236667.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|288933639|ref|YP_003437698.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|206568292|gb|ACI10068.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|288888368|gb|ADC56686.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 299 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 14/294 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR G+ + AA +L ++ S+S + LE +G LF R R + LTE G Sbjct: 6 YNQIRIFQSIAREGTISAAARKLEITPPSVSNALKLLEEHIGHPLFVRTTRRIELTETGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T+ LET+ L++ + +PSG +RI + +L+ + F YP IQ+ Sbjct: 66 QLLEQTAAAVEVLETSLESLRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + + ++I + D IR ++ + + + YA+ YL P Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAVPA 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L+ H LI + ++P + D TV+ P L N + G Sbjct: 186 DLNHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI L + I + P+ + +MED VY YP+ T ++KA +F+ Sbjct: 240 GIGRLFEPIWRLQPDREQFLPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFL 293 >gi|16119552|ref|NP_396258.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15162106|gb|AAK90699.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 300 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 10/289 (3%) Query: 5 WDKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +++L AR+GS +T AA L +S S+IS+ I LE +G+ LF R R LTLT Sbjct: 7 FERLTGLIAFARAGSLGSYTAAARSLSVSPSAISKSIQRLEAHLGVSLFTRTTRSLTLTA 66 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +H + E + + + +P+G LRIAT++ +G +++ L +F L+P Sbjct: 67 EGRDIHGRALRLLRDAEAIEQAAKTARAEPTGMLRIATSMAIGLHVIAPALAKFRKLHPK 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + L L + +D+ + D A+R+ + S L+ R+L + YA+P YL P Sbjct: 127 VAFDLRLSDHRVDLVEEGIDLAVRIGD-LPDSRLLSRRLSPHRLCCYASPDYLAMHGTPK 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L+ H + + F W + DR + S + V++ ++M G Sbjct: 186 HPDDLEAHETVNL--RYQSTGQVFRWPFRIGDRDVEIVPSSGIIVDASEAVMATIATDGG 243 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 I + ++ + + LV ++ D + +PE+ ++ ++AF Sbjct: 244 IGMAASFMARPWVNRGELVPVLSDFAVERNNITAVWPESRRSNPAVRAF 292 >gi|332307390|ref|YP_004435241.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174719|gb|AEE23973.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 301 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F +AR+ + + A ++ LS + S IS LE +G++L +R R ++LTE+G Sbjct: 4 EHLKLFVRIARTCNISAAGQEQDLSPAVASAYISKLEDNLGVRLVHRTTRKVSLTEEGEA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ +ET + + + P G LR+ G+ + L EFL YP++ + Sbjct: 64 FLPHAEEILTNIETARASIGDGEHNPKGVLRVTAPASFGRMHIVPALAEFLARYPELSVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +D+ D AIR ++ S+L RKL A+P Y+K EP + Q+ Sbjct: 124 FRFNDSIVDLVEGGFDIAIR-DAALKDSNLFARKLAPDRRIVCASPKYIKEFGEPKTPQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + H + L E +V + G+ RI ++ ++ + GSG+ + Sbjct: 183 VANHQCVNLKGLDTWEFEAEKGSVSV-KANGKIRI-----DNGEAVRDAGIEGSGLVMSS 236 Query: 246 ---DYIVKDNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291 Y + LV++++D S T ++ YP + K++AF +F Sbjct: 237 IWCAYQALQSGQLVQVLKDYPMVSKTAIWAVYPSNRQLAPKVRAFIDFFL 286 >gi|328675265|gb|AEB27940.1| transcriptional regulator, LysR family [Francisella cf. novicida 3523] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 17/288 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 12 FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELRVDLLNRTTRSLSLTHEGRLLF 71 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 72 NYCRNLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130 Query: 127 ILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ K D + D A+ P ++ RK+ T A+P YLK P ++ Sbjct: 131 SIEEKMPDFKANEVDIIFAVNWTPP---EDIVARKIATTRYVLCASPTYLKKNGFPSNLS 187 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIAL 243 +L HN IP + T + I + + + ++ CVL GIA Sbjct: 188 DLANHN------YIPHKSRTTALVNTKNNKINPQTLPYSISANNIDFIKECVLNDFGIAQ 241 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 +YIVK+ N L+ +++D +Y YP+ K+K F N Sbjct: 242 FHEYIVKNEIQNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVN 289 >gi|298486830|ref|ZP_07004886.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158697|gb|EFH99761.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 300 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 15/251 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++LF+R R ++LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H ET + L+ + SG LR+ GQ ++ L + P + I L Sbjct: 66 PHAKTMLHASETARATLKGDTGTASGVLRVTAPSVFGQTVIMPLLPVLMQENPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI D AIR+ I+ S+L+ R L A+P YL +P ++EL Sbjct: 126 LSDSIVDIVGMGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARHGKPALLEELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243 H I + W + GEP Q NS ++ C G G+A+ Sbjct: 185 HHPCI--------ALHAMPWWSFTKN--GEPITIRAQGPFSANSVEAVRTACKQGMGLAM 234 Query: 244 LPDYIVKDNPN 254 L + V+ N Sbjct: 235 LTYWDVRQEIN 245 >gi|222080845|ref|YP_002540208.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725524|gb|ACM28613.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 13/246 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F AR+GS T AA +L L+QS++SRQI LE ++G++LF R + + LT G Sbjct: 18 LSAFEAAARTGSVTVAARELDLTQSAVSRQIKALEGQLGVELFVRERQTIRLTLAGDSYA 77 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R E ++ + ++L+ + G L +A G L L +FL P I I L+ Sbjct: 78 REIREALRRISSASLDLRANPN--GGTLNVAILPTFGTRWLAPRLGDFLATNPGITINLV 135 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSIQE 185 D +D D AI P + + + M A +P +L R EP + Sbjct: 136 TRLSPFDFRLDSIDAAIHFGHPHWPGAELAFLMSERTMPA-CSPDFLARHRLVEPADFLQ 194 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + +L T D K WLA P + + + + + Q + G G+ALLP Sbjct: 195 VPLLHLTTRPDAWEK------WLAANGAPASG--VRGMLFDQFATAAQAAISGLGVALLP 246 Query: 246 DYIVKD 251 +++++ Sbjct: 247 TFLIQE 252 >gi|325915944|ref|ZP_08178240.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325537911|gb|EGD09611.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 136/295 (46%), Gaps = 19/295 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF VA F+ AA+ L S ++++RQ++ LE +G +L R R ++LT G+ Sbjct: 5 DAMRVFTAVAERSGFSAAADALDRSTANVTRQVAALEQRLGTRLLNRTTRRVSLTSAGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ L+ + + +++PSG LR+ + G L L F YP +++ Sbjct: 65 YYQRCLQLLADLDDLEATIGAQALEPSGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L L ++ +D+ + D AIR+ R+P + LI R+L + + AAP YL P Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRLLTCAAPAYLARAGTPRHPS 182 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H + + GD + D + + L+ N+ + + G Sbjct: 183 DLAGHECLLYHYSPSGDELRFHGPDGDVTVRIH--------GGLRANNGHVLNAAALAGQ 234 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+ + PD++ + LVR++ + ++ Y K+++F +++ Sbjct: 235 GVVMQPDFLADAHIASGRLVRLLPEYELGEIGIFAVYASRSHLAPKVRSFIDYLL 289 >gi|271500821|ref|YP_003333846.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270344376|gb|ACZ77141.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 302 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 135/299 (45%), Gaps = 18/299 (6%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +VF + GS T AA+ L +S++ ++R ++ +E +L +R R L+LT +G + + Sbjct: 8 QVFVTITEQGSLTGAADALEMSRAMVTRYLAEMERWAEARLLHRSTRQLSLTHEGETVLQ 67 Query: 69 VTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E V HKL+ +E P+G LR+ + L Q L + +LL YP + Sbjct: 68 HCRELLAVSHKLDMPAKGRKE----PAGLLRLTCSPSLAQATLVAAITTYLLRYPKTAVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + + +++ + D AIR+ + S LI R+L A+P YL P +++ Sbjct: 124 LQVASHTLNLIEERIDLAIRITNQLD-SGLIARRLGGCPSVVCASPSYLATHGTPQRVED 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HN +T+ K + F I P N L +++ + G+G++L P Sbjct: 183 LAVHNCLTY-SFFGKSLWQFTRKGDA---IAVPVSGSFSANDSLVLLEAALNGAGVSLQP 238 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 Y V D + L+ + + +Y Y + + L+A +F+ F +WK Sbjct: 239 VYSVTDLIASKRLIALFPESQPQELDIYAVYHSRERMSPALRALVDFLAEWFGNNLEWK 297 >gi|186475182|ref|YP_001856652.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184191641|gb|ACC69606.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 341 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 1/195 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ + +R+F A+ GS + A +L L+ ++ S +++ LE + +LF R R L LT Sbjct: 1 MTDNLGDIRLFVEAAQLGSLSAAGRKLGLTPAAASARLAKLEGGLKARLFERTTRQLRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + L+ + LQE GK+RI+ T D G+NLL L EF LYP Sbjct: 61 DEGRVYLSCCQQALRALDDAEAALQEGQNAVRGKVRISATSDFGRNLLMHWLDEFNALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ L L + ++ + D AIR P Q SSL+ R L A+P Y+ EP Sbjct: 121 DVTFALTLSDSLQNLVQEDIDLAIRFGVP-QDSSLVARWLAPNPRVLCASPEYIARHGEP 179 Query: 181 LSIQELDKHNLITFG 195 +L + + I G Sbjct: 180 KDPLDLARFDCIVLG 194 >gi|21232642|ref|NP_638559.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767255|ref|YP_242017.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21114447|gb|AAM42483.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572587|gb|AAY47997.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 303 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 21/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F VA GSFT AAE L L ++S+S + LE +G +L +R R + LT G+ Sbjct: 5 DTLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTADGTA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ ++ Q Q + G+LR+ + + + + L FL +P ++I+ Sbjct: 65 FYQRSRDLLDDMDELQGMFQRDHSQLRGRLRVDMSAGIARQFVIPALPAFLAQHPQLEIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC +R+ ++ +SL+ R L + + A+ YL P ++++ Sbjct: 125 ISGTDRRVDLVREGFDCVLRV-GTVEDTSLVGRPLGVLRIINVASAQYLAQRGVPQTLED 183 Query: 186 LDKHNLI----TFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L +H+L+ T G P ++WL P + VN+ + + Sbjct: 184 LAQHDLVHYVSTLGQRSPGFEYHDGAQYHWL---------PMRGPVTVNNGDAYLAAARA 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI P ++ D+ LV ++ + V Y + +++ F ++I Sbjct: 235 GLGIIQAPASPLQAHLDSGVLVEVLAQMAPEPMPVTLLYAQRRHLPQRVRLFMDWI 290 >gi|330815693|ref|YP_004359398.1| Putative LysR-family transcriptional regulator [Burkholderia gladioli BSR3] gi|327368086|gb|AEA59442.1| Putative LysR-family transcriptional regulator [Burkholderia gladioli BSR3] Length = 323 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 20/265 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA SF AA +L +S + ++R I+ LET + +L +R R L+LTE G++ Sbjct: 7 MRVFVCVAELQSFRQAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGTRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + + +P G LRI + L L + F YP +++QL Sbjct: 67 DGCRALLEEFDHLEASVAHTIREPVGTLRIVVSGSLSPQRLTPLVDGFRRQYPKVRVQLT 126 Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + ID + Y I RK ++L+ L A A+P Y++ EP EL Sbjct: 127 VADGPIDGLDTAYDAAIIAGRKIEDGAALVSHALAPDPFVAVASPAYIEQRGEPHRPDEL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCVLGS 239 +H +T +P F W R + R + L +N + + GS Sbjct: 187 ARHAAVT----LPLDSHGFAW-----RFVDAGRFAHLVTLQPAYTINDAWLVRAAVMAGS 237 Query: 240 GIALLPDYIVKD---NPNLVRIMED 261 GIA+LP+ V D LVR++ D Sbjct: 238 GIAILPESFVADAISRGELVRLLAD 262 >gi|327193735|gb|EGE60614.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 300 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 6/281 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V + GS + AA +L L+Q +I R + LE +G +LF R GL T+ Sbjct: 7 WDFYRSFLTVLQHGSLSAAARELGLTQPTIGRHVDALERAIGAELFTRSPNGLLPTDAAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + +G +RI+ + + +L L +P++QI Sbjct: 67 ALKPYAETLAATTAALLRTASSQRERVAGTIRISASEVIAVEVLPAILGPLQDAHPELQI 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + D+ AD A+R+ +P Q +L+ R++ I + +A YL+ P S+ Sbjct: 127 ELSASDAIEDLVNREADIAVRMAEP-QQDALVVRRIGDIPLGFHAHRRYLERYGIPQSVA 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H LI F + L P+ E + +S L+ + G GI L Sbjct: 186 ALANHRLIGF-----DRQTAYVRLVMKRYPVPEGIQFAYRTDSNLAQLAAIRAGVGIGLC 240 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + ++NP+LV ++ D + E+LK + + +A Sbjct: 241 QIGLARENPDLVHLLADAFNIPLGTWVAMHESLKTSPRCRA 281 >gi|308186844|ref|YP_003930975.1| hypothetical protein Pvag_1336 [Pantoea vagans C9-1] gi|308057354|gb|ADO09526.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea vagans C9-1] Length = 307 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 16/295 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V SGSFT AA+ L++ ++++S+ + LE + ++L R R +T+T +G + + Sbjct: 7 IKAFSRVVESGSFTRAADSLNMPKATLSKLVQELEAHLSVRLLQRTTRRVTVTAEGREYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H LE KP G LR+ +++L L +F YPDI + L Sbjct: 67 EKALRILHDLEDIDACFNALRSKPRGHLRVDIGGSTARDILIPLLPDFFARYPDITLDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 + ++ +++ D DC IR P+ SSL+ R + + A P YLK P EL Sbjct: 127 VSDRPVNLISDNVDCVIR-GGPLADSSLVARLIGHATLITCATPAYLKASGVPAYPDELR 185 Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + H L+++ G P E + I RI + N +L+ + G GI Sbjct: 186 NGHWLVSYLSPLTGKPFPLRFERQEEKIEI---ISAHRIGVNESNGHLAA---GLAGLGI 239 Query: 242 ALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 Y + +V I+ D + + YP+ T +L+ F +++ + Sbjct: 240 IQTFSYSLSAILRRGEMVEILRDWRPAGYPFHLVYPQNRHVTQRLRVFIDWLVAR 294 >gi|260777469|ref|ZP_05886363.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260607135|gb|EEX33409.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 296 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 18/273 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA + SFT AAE L +S+ +SR + +E + +L +R R ++LT G + Sbjct: 7 IRSFVEVANAKSFTKAAESLDISRLQVSRHVQEVEHWLQQRLLHRTTRKVSLTHAGEQAF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPS--GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E +EL K + G +R+A I QNLL ++ F+ L+P + I Sbjct: 67 VRCQRILD--EAAALELDSMCGKDALVGTIRVAAPIGFAQNLLIDRVQNFVSLHPKVVID 124 Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +++ ++ + D A+R KP + +LI R+L+ I A+ YL EP + Sbjct: 125 ILASDQNSELVDERVDVALRFTDKP--ADNLIARRLMAIDTAICASRDYLSEFGEPKHAE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL HN +T ++ NWL D + +S ++ N ++++ V G G+ Sbjct: 183 ELVDHNCLTHLNV-------KNWLFVKDNQTVDVEVSGNIRANDLSTLVRVAVNGKGVIR 235 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 LP + + L+ I+ D PS+ ++ Y Sbjct: 236 LPCDLANPLIEKGELLSILNDYHYPSYALWAVY 268 >gi|33601913|ref|NP_889473.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33576350|emb|CAE33429.1| probable LysR family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 295 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 6/268 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 + V+A + SFT AA++L +S+S IS ++ LE E+G+ L R R + TE G+ L Sbjct: 1 MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVHPTEAGALLVER 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + E++ + P G+LR+ + LG+ L L +PDI +++ L Sbjct: 61 ARPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +++ + D A+R + S + + ++L H A+P YL P EL +H Sbjct: 121 DRFVNLRQEGYDFALRHADQV-SDAYVSKRLCATRAHLVASPAYLARHGRPAHPSELARH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + + F + + CL VN+ + + G GIA++PD+ + Sbjct: 180 RCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESAAHGLGIAMVPDFSL 239 Query: 250 KDNPNLVRIMEDVITPSFTVYFCYPEAL 277 D +L + + P + Y + +L Sbjct: 240 GDCADL-----EPVLPQWDCYAGFGRSL 262 >gi|152979204|ref|YP_001344833.1| LysR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150840927|gb|ABR74898.1| transcriptional regulator, LysR family [Actinobacillus succinogenes 130Z] Length = 302 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 8/245 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F VA+ +F+ A + ++ S ISRQI LE + G LFYR R +TLT+ G + Sbjct: 11 LEIFLAVAKEKNFSEVARRYDVASSVISRQIKQLEDDFGQTLFYRSTRSMTLTQAGERFA 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + EL+++ +P+G +RI + GQ + +L E YP +QI L Sbjct: 71 DYVQNLLGQFDGLCNELRQTDSEPTGTVRINAPVFFGQKHITPHLPELQKRYPKLQIHLT 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186 + +D AD IR+ S+ ++ K++ H A+P +L P S +L Sbjct: 131 QTDDFVDPYSQTADLIIRIAGLADSN--LKMKIIARQRHFLLASPAFLAQFGTPRSTDDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 ++ + + + F + G+P N+ S+++ V G GI ++PD Sbjct: 189 PRYQGLFYRGQLGILHWRFGQSGRIMD--GQPYFVS---NNAASLIEMAVKGLGIVMMPD 243 Query: 247 YIVKD 251 + V D Sbjct: 244 WAVAD 248 >gi|156978111|ref|YP_001449017.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116] gi|156529705|gb|ABU74790.1| hypothetical protein VIBHAR_06916 [Vibrio harveyi ATCC BAA-1116] Length = 272 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 132/277 (47%), Gaps = 18/277 (6%) Query: 20 FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79 + AAE+L ++ S++SR+IS +E G+KL R R L LTE+G L+R V L Sbjct: 1 MSKAAEELGINASTVSRKISEIEAYYGVKLLIRSTRALNLTEEGKALYRYFQNVDDVLRR 60 Query: 80 TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139 ++ E+ ++P+G L++ +DLG LLQ L F YP + + L N+ +D+ + Sbjct: 61 SEDEIMHHQLEPTGILKVVVPVDLGNLLLQDALVSFSQKYPKVLLDLDFSNRQVDMLEEG 120 Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK-HNLITFGDLI 198 D + + + S SLI +L++ + A+ YL E SI +L H + Sbjct: 121 IDIWFCIGE-VNSKSLISSELLSYRRYLMASKTYLLEYGEIGSIADLKAPHRQL------ 173 Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255 K F + + D+ + + L VNS +I + C G G+A + +V+ + L Sbjct: 174 -KSKNPFIYQES-DKSVLKQLPVALTVNSGYTIFKACTSGLGLAFIMSSLVEKYDTDKTL 231 Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 V ++ + I +V Y E KLK R FL Sbjct: 232 VPVLPNEIYQQSSVNMVYKER-----KLKPMRVEYFL 263 >gi|53719362|ref|YP_108348.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|67640533|ref|ZP_00439336.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|121600049|ref|YP_992916.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124384979|ref|YP_001026252.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126442202|ref|YP_001058997.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126448249|ref|YP_001080473.1| LysR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|126454207|ref|YP_001066246.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|134277448|ref|ZP_01764163.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167002534|ref|ZP_02268324.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] gi|167738567|ref|ZP_02411341.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 14] gi|167815787|ref|ZP_02447467.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 91] gi|167845703|ref|ZP_02471211.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] gi|167894275|ref|ZP_02481677.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 7894] gi|167902669|ref|ZP_02489874.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] gi|167910914|ref|ZP_02498005.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei 112] gi|217421907|ref|ZP_03453411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|237812258|ref|YP_002896709.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|242317376|ref|ZP_04816392.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|254177812|ref|ZP_04884467.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|254179800|ref|ZP_04886399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|254188800|ref|ZP_04895311.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254199779|ref|ZP_04906145.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|254206104|ref|ZP_04912456.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|254297645|ref|ZP_04965098.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|254358474|ref|ZP_04974747.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|52209776|emb|CAH35747.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|121228859|gb|ABM51377.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1] gi|124292999|gb|ABN02268.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10229] gi|126221695|gb|ABN85201.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] gi|126227849|gb|ABN91389.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106a] gi|126241119|gb|ABO04212.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC 10247] gi|134251098|gb|EBA51177.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|147749375|gb|EDK56449.1| transcriptional regulator, LysR family [Burkholderia mallei FMH] gi|147753547|gb|EDK60612.1| transcriptional regulator, LysR family [Burkholderia mallei JHU] gi|148027601|gb|EDK85622.1| transcriptional regulator, LysR family [Burkholderia mallei 2002721280] gi|157808022|gb|EDO85192.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 406e] gi|157936479|gb|EDO92149.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|160698851|gb|EDP88821.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 10399] gi|184210340|gb|EDU07383.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1655] gi|217395649|gb|EEC35667.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|237503166|gb|ACQ95484.1| transcriptional regulator, LysR family [Burkholderia pseudomallei MSHR346] gi|238521263|gb|EEP84716.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|242140615|gb|EES27017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1106b] gi|243061808|gb|EES43994.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20] Length = 306 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + + Sbjct: 11 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +Q + + + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGVPAKLADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|322832333|ref|YP_004212360.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321167534|gb|ADW73233.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 302 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 7/290 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++ RVF VA GSF AA L + ++S+S I LE+++G++L +R R + LT G Sbjct: 4 FNQYRVFTQVAEMGSFVRAASALSVPRASVSAAIQQLESQLGVRLLHRTTRTVRLTTDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + ++E Q S + SGKL I + + L+ L E L +P +Q+ Sbjct: 64 QLLERVRPLLAEVEDIDQSFQLSQRQASGKLTIDVPSRIARRLIAPALPELLRCHPHLQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L ++ ID+ D DCAIR+ + SSL+ R L I + A+P YL P Sbjct: 124 VLGSSDRAIDLVQDGVDCAIRV-GVLHDSSLVVRSLGHITLINCASPAYLSEHGLPSQPD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L +L G + + ++ W + D I + + VN+ S + C+ G G+ Sbjct: 183 DLVGEHL-AIGYISSRTGKELPWQYQSKDGHIHSVSVPHQVGVNNAESYIACCLAGLGLI 241 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +P + V+ D+ L+ ++ D S V YP + + +L F + Sbjct: 242 QIPRFDVQHLLDSGELIEVLPDYRAASMPVSLLYPHRRQRSRRLAVFHAW 291 >gi|293394188|ref|ZP_06638488.1| HTH-type transcriptional activator AaeR [Serratia odorifera DSM 4582] gi|291423166|gb|EFE96395.1| HTH-type transcriptional activator AaeR [Serratia odorifera DSM 4582] Length = 303 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ V+ V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVYAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + ++ +L + P+G LRI ++ + QN+L + L YP + + L Sbjct: 66 YQGCRRMLQEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL ++L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSKRLGSMPMVICAAKSYLAQHGTPQK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233 P M +F+WL RP E RIS N ++++ Sbjct: 181 ------------PNDMVNFSWLEYSVRPDSEFELIAPEGISTRISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|209919164|ref|YP_002293248.1| putative transcriptional regulator [Escherichia coli SE11] gi|300816316|ref|ZP_07096538.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|209912423|dbj|BAG77497.1| putative transcriptional regulator [Escherichia coli SE11] gi|300531006|gb|EFK52068.1| LysR substrate binding domain protein [Escherichia coli MS 107-1] gi|324018056|gb|EGB87275.1| LysR substrate binding domain protein [Escherichia coli MS 117-3] Length = 307 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|167719585|ref|ZP_02402821.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] Length = 247 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + + Sbjct: 11 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +Q + + + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGVPTKLADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|53723424|ref|YP_102835.1| LysR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|52426847|gb|AAU47440.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC 23344] Length = 304 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + + Sbjct: 9 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 69 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +Q + + + A P YL P + +L Sbjct: 128 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGVPAKLADL 187 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 188 ARHMCIRF--RFPKSGRLHKW 206 >gi|115360371|ref|YP_777508.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285699|gb|ABI91174.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 297 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 5/271 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR SFT AA +L +SQS++S+ + LET +G++L R R ++ TE G + Sbjct: 7 NDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAGEE 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + ++E + + KP+G +RI T ++ L+ L YPDI+++ Sbjct: 67 LFQAVAPRIDEIEMKLAAVADFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIRVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D +I + D +R + + R I M A+P YL + P + Q+ Sbjct: 127 LSVDYGLANIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L H+ +T K + + W R + R+S + N+ ++Q + G GIA + Sbjct: 187 LLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVSGRITCNTQPHMVQAALDGFGIAFV 244 Query: 245 PDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273 + IV D+ +RI+ P F Y Y Sbjct: 245 TEDIVLDHVRSGQLRIVMPDWCPVFPGYHAY 275 >gi|116050491|ref|YP_790690.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585712|gb|ABJ11727.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 301 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+VF VA +G F AA Q++LS +++S+ ++ LE + ++L R R ++LTE G Sbjct: 7 LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE L PSG LR++ + L L + FL YPD++++L+ Sbjct: 67 QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ + D A+R + S L+ R L+ + AAP YL +PL + L Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLILEHVLCAAPAYLGQHGQPLRPEALR 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I F W R + P +V+S L++ + G G++L+P Sbjct: 187 EHECIRFS----LSGHADRWTFRKGRECVAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+ LV ++ ++ YP + + GK + F +F+ Sbjct: 243 LYVQAELAEGRLVELLAGWKADETAIHAVYP-SRQLAGKTRVFLDFL 288 >gi|269963740|ref|ZP_06178059.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831533|gb|EEZ85673.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 320 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 140/297 (47%), Gaps = 22/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L +F G F A+ + H+S ++SR ++ LE ++G KL +R+A+ LT G Sbjct: 18 DISNLYLFCQSVECGGFAAASLKAHVSAPTLSRAVASLEDKLGEKLVHRNAKQFQLTTAG 77 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + ++ +L +L S +G++R++ N LQ EF+ L+P++ Sbjct: 78 DEYYQRFAALFMQLNDEWTQLSNSQPVLTGEIRVSCPEPFADNFLQKMAIEFMQLHPEVS 137 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + D AI + P ++ LIQR+L + A+P Y++ +P Sbjct: 138 VTIQFSAGTERFFDEQIDLAI-VTTPPHANHLIQRQLFESPLMLAASPSYIEKYGQPERA 196 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPR--ISCLQVNSYLSIMQYCVL 237 +EL H L++ G+ +P W D R +PR IS L++N + + Sbjct: 197 EELMNHQLLS-GNNLPY------WELKKDGKAIRIPYQPRYSISSLRLN-----IDATIA 244 Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+GI ++P + + LV ++ DV P+ + + + ++ AFR+ IF Sbjct: 245 GAGICMMPRAAFEKHAARKELVEVLSDVEYPTGKAFLVWADRKLIATRVVAFRDMIF 301 >gi|18478993|dbj|BAB84544.1| putative temperature-dependent regulator A [Serratia marcescens] Length = 303 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 111/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVEFGSFTAAARQLGMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + ++ +L + P+G LRI ++ + QN+L E + YP + + L Sbjct: 66 YQGCRRMLQEVSEVHEQLYAFNNTPAGTLRIGSSSTMAQNVLANMTAEMMKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR +Q SSL R+L + M AA YL P Sbjct: 126 VTGIPAPDLITDGLDLVIRT-GALQDSSLFSRRLGQMPMVVCAAKSYLIQHGTPQK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233 P M +F+WL RP E RIS N ++++ Sbjct: 181 ------------PSDMVNFSWLEYSVRPDSEFELMSPEGITTRISPQGRFVTNDSSTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKNGAGIAYAP 240 >gi|84386686|ref|ZP_00989712.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] gi|84378492|gb|EAP95349.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01] Length = 299 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 19/296 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +++F V GSF+ AA+ L ++ + + R I+ +E +G L R R + LT G Sbjct: 4 YRNMQLFCTVVDKGSFSRAAKALGITPAIVGRHIAAMEDSLGFVLLNRTTRSMHLTPGGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + V +E + L + P G +R++ +G L+ +KEF Y I+ Sbjct: 64 AYYEGAQAVLSDIEQLEDSLTTAHQNNPEGLIRLSAPDAMGPYLMT-VIKEFRKEYTGIR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L L N +++ + D +IR +Q SS I KL + YA+P Y+ + P Sbjct: 123 FDLALSNSHLNLIEEEIDLSIRFSFELQDSSYIATKLGESELGLYASPSYISEYQAPSDY 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H+ + G+ + W+ TVD +P ++ + ++ +++Q V G G Sbjct: 183 TDLKNHDCLHMGN----SRDGDYWMLTVDGKSLSYRQPWVAVISDSN--TLIQAAVDGMG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 IA++P V ++ +LV+I P +Y YP T K +R +FL+ Sbjct: 237 IAMIPSIFVNKYVNSGSLVKIKNVAEFPIVNIYGMYP-----TRKHVPYRLSLFLE 287 >gi|222081053|ref|YP_002540416.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725732|gb|ACM28821.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 301 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 123/251 (49%), Gaps = 11/251 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+D L +F +A++G A + ++++SR++S LE + ++L R +G+ LTEQG Sbjct: 6 DFDGLALFIRIAQAGGLASAERATGIPKATLSRRLSVLEESLNVRLVRRTKKGVVLTEQG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + E E+Q+ V SG +R++ D+ +L L +F YPD+ Sbjct: 66 QQLFDRSQTAFMLAEQAVAEVQDERVALSGTVRLSLPPDMATAVLAPTLIDFKTRYPDVT 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREP 180 I++ L ++ + + + D +R+ P+ S L+ +++ T+ A+P +L + P Sbjct: 126 IEMTLADRRVSLIEEGYDLVVRM-GPVADSELMFKRIATLPRTLVASPAFLSGHPDLSAP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++ L L D I +++ + R PRI N +++ G G Sbjct: 185 GDVEML--PALAIRRDRIEWDLQNAQGV----RETVRPRIG-FAANRQTILVEAACAGLG 237 Query: 241 IALLPDYIVKD 251 IA LP +++KD Sbjct: 238 IANLPKFMIKD 248 >gi|152985332|ref|YP_001348695.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960490|gb|ABR82515.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 311 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 21/301 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L F V G F A ++ + +S +SR+I+ LE + ++L +R R L LT Sbjct: 1 MPHDLNDLYYFAKVVECGGFAAAGREIGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + + + E + E SV+P G+LR++ + + + L L FL +P Sbjct: 61 EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +Q++++L N+ +D+ + D A+R+R+ + +L+ R+LV AAP + R Sbjct: 121 LVQLEILLTNRRVDLLNEGVDVALRVREIGDEDPALVCRRLVPATTQILAAPTLIGGRR- 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232 ++ D + F I D AT+ P G EPR L V+ +L Sbjct: 180 ---LEHPDDLADLPFLGAIEN---DRKVHATLIGPDGSRYHLAREPR---LGVDDFLLRK 230 Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + + G G+ L+P+ Y K+ +L+RI+ P T+ Y ++A +F Sbjct: 231 KAAIAGLGVTLMPEGYCDKELAEGSLIRILPHWTLPQSTLQAAYLPRSSQVPAIRALLDF 290 Query: 290 I 290 + Sbjct: 291 L 291 >gi|78357533|ref|YP_388982.1| LysR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219938|gb|ABB39287.1| transcriptional regulator, LysR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 297 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 126/261 (48%), Gaps = 29/261 (11%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL----HRV 69 VAR SF+ AAE L + S++SR+I LE +G+ LFYR R + LT+ G+ L V Sbjct: 18 VARQKSFSKAAEALGIGVSTLSRRIKLLEKRMGVLLFYRDTRNVELTDNGAYLLDRCGFV 77 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 EV ++ + +Q KPSG +R+ +DL LL+ L +F +PDI ++L Sbjct: 78 LEEVQKAYDSVVLNMQ----KPSGLVRVCMFLDLYDGLLKKVLLDFAARWPDISLELTFQ 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQEL 186 + +D+ D A I + +L+ RKL+TI YA+P L+ REP + + Sbjct: 134 DHPVDMRTAPFDVAFVTGNAI-APALVTRKLLTIEPFLYASPLLLERYPMPREPDDLHRM 192 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL-- 244 L FG P M + + TVD PR S +S + + G G+ALL Sbjct: 193 PCIVLQRFGGRWP--MHNGSRQVTVDV---VPRYS---FSSVEMCRDFLLAGHGVALLRK 244 Query: 245 ----PDYIVKDNPNLVRIMED 261 PD + LVR++ D Sbjct: 245 ERARPD---EKAGRLVRLLPD 262 >gi|119386961|ref|YP_918016.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377556|gb|ABL72320.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 298 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 129/295 (43%), Gaps = 10/295 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF V GS T L +S + S +I LET G++L R R L TE G Sbjct: 5 ESLRVFVRVVELGSITAGGRDLRMSPAVASNRIKDLETRYGVRLLNRTTRKLVPTEVGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V L+ + + S P G LR+ + LG+ L+ + +F YP ++++ Sbjct: 65 FYDNARRVIETLDEAEAVVSGFSGMPHGALRVTAPLGLGRRLIAPLVPKFCDEYPGVEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++DI D D A L +P Q S+L R++ A P YL+ P ++ Sbjct: 125 LRLSDRNVDIIADGIDLAFFLGEP-QDSALKWRRIAECRRVLVATPAYLEQHGRPERPED 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HN + P+ E + L T + P + + + + G GI P Sbjct: 184 LTAHNCLLL--RYPRSPEYYWVLQTPEGPQKMLVNGKFDADDGDVLSAWALGGRGIVNRP 241 Query: 246 DYIVKDNPNLVRIMEDV----ITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y V ++ R++E + TPS F V P K++ F +FI + R Sbjct: 242 RYEVAEHLASGRLVEVLPEYPPTPSQFGV--LTPHRRLQDPKVRLFADFIAREVR 294 >gi|26989584|ref|NP_745009.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|148548038|ref|YP_001268140.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|24984463|gb|AAN68473.1|AE016479_13 transcriptional regulator, LysR family [Pseudomonas putida KT2440] gi|148512096|gb|ABQ78956.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 300 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 24/297 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V +G F A QL + +S +SR+I+ LE +G +L R R L LT G Sbjct: 3 DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + S +P G+LR++ + L L + FL YP +Q Sbjct: 63 ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L N+ +D+ + D A+R+R + +L+ R+L M AAP + + REP Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPGE 182 Query: 183 IQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + L + L+ F P + L EPR++ ++ ++ Sbjct: 183 LASLPVLGAAEADRLVHFRLFGPHGKQQEIAL--------EPRLA---IDDFVVRNAAVR 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G LP ++ LVR++ D P + YP G L A R +I Sbjct: 232 AGLGFTALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285 >gi|312971526|ref|ZP_07785701.1| uncharacterized HTH-type transcriptional regulator ycjZ [Escherichia coli 1827-70] gi|310336123|gb|EFQ01323.1| uncharacterized HTH-type transcriptional regulator ycjZ [Escherichia coli 1827-70] gi|323962489|gb|EGB58071.1| lysR family protein regulatory helix-turn-helix protein [Escherichia coli H489] Length = 257 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L + +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H I +P W L R + L +N+ I+ + G G+A LP Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245 >gi|307946693|ref|ZP_07662028.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307770357|gb|EFO29583.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 316 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 16/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VA GS + A + LS S+ S +++ LE E+G +L R R ++LTE G Sbjct: 4 EDLNFFTRVAELGSLSAAGREFGLSPSAASSRLTNLEKELGSQLVARTTRQVSLTEAGKI 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ + + + P G LRI+ + G+ + L EF LYPD+++ Sbjct: 64 MLEHARAALSEIDQARSTIDAAQDAPRGVLRISANVFFGRKHILPYLGEFRQLYPDLKLD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ++ +D+ + D AIR P+ SSL+ RKL A+P Y+ P S + Sbjct: 124 IDMSDRLVDLVNEGYDVAIR-GAPLPDSSLMARKLGGNPRVLCASPDYIARKGAPCSPDD 182 Query: 186 LDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H+ I F D +P D +D P+ + +S + + G G+ Sbjct: 183 LRNHDYIGF-DPMPVWHFSGPDGEIAFNLDDPV-------ISGDSGDFAYEAALYGLGLT 234 Query: 243 LLPD-YIVKD--NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + ++ +D + LV +M D IT + +Y YP A K+ AF +F+ K Sbjct: 235 VKSSAHVWEDLRDGRLVEVMMDYPITRTGNIYAVYPPAKFLAPKVSAFVDFLISK 289 >gi|323525498|ref|YP_004227651.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382500|gb|ADX54591.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 328 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 25/301 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EF+ YP+ Sbjct: 65 AGQLFYQHCQAMLDEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ +D+ D D A+R+R P ++++++ R L AP L+ P Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + + +P D + + P G EPR+ V + LS ++ Sbjct: 185 LQPNDLSRFETLD----VPTS--DGRHVYNLIAPDGSRHAHEHEPRL----VTADLSTIR 234 Query: 234 YCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 VL G GIA LP+ + L +M P+ +Y + + G + A R F Sbjct: 235 EAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPAPQLYAVF---VSRQGMVPAVRAF 291 Query: 290 I 290 + Sbjct: 292 V 292 >gi|73540722|ref|YP_295242.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118135|gb|AAZ60398.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 297 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 15/292 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+ F AR SFT AA LH++Q ++S+Q+ LE+ +G++LF R + L LT G + Sbjct: 7 ELQAFEASARHSSFTAAARALHVTQGAVSKQVRSLESLLGVELFERVRQRLILTPAGVRY 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++E +E + +G L IA+ LG L L +F +P+++++ Sbjct: 67 LERVRPTLDEIEAATVEAAGREQQ-AGTLHIASMPTLGAKWLIPRLPQFFARHPEVRLEF 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSL----IQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + D AIR + SL I R++V + A A H P Sbjct: 126 VPHAQGYVFAEPELDAAIRFGVGVWPGSLADYMIGREIVPVCRPALVAGHPGGVVGAPAE 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +Q+ + T +P+ D W A + P + + + + + + Q + G GIA Sbjct: 186 LQQYPLLHHTT----VPEAWPD--WFAELGVPTRD-AWAGARFDQFSLLTQAALSGLGIA 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 L+P ++++ N LV + + Y CYPE ++ L+ FR ++ Sbjct: 239 LIPRCLIEEELANGALVVAHPARVLSNKGYYLCYPEHKQHLPALQTFRAWLM 290 >gi|311109394|ref|YP_003982247.1| HTH-type transcriptional regulator YeaT [Achromobacter xylosoxidans A8] gi|310764083|gb|ADP19532.1| uncharacterized HTH-type transcriptional regulator YeaT [Achromobacter xylosoxidans A8] Length = 307 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/288 (23%), Positives = 133/288 (46%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +V + G+ + AA +L L+ ++S +++ LE +G++L R R +++T++G Sbjct: 7 LAFFSLVVKHGNLSAAARELGLTPPAVSTRLAKLEQRLGVRLLNRTTRRVSVTQEGELYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + + +P G LR+ T G+ + + +F YP++++Q+ Sbjct: 67 AEGGRILTDLEALERSVSSARARPQGLLRLNATFGFGRAHIVPAVSDFARQYPEVEVQMR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D A+R + + L RK+ + A+P YL+ EP + +L Sbjct: 127 LTDRPLNLIEEGFDVAVRF-GDLPDARLTARKIASNRRLLCASPRYLETHGEPRAPGDLQ 185 Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H I D+ + L + P L N S +++ + G GI + Sbjct: 186 RHRCIVVRENDVAYGTWRLESGLRAETVKVRGP----LSSNDGQSALEWALDGHGIVMRS 241 Query: 246 DYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ D+ R ++ D TP ++ YPE L K AF F+ Sbjct: 242 EWETADHLRAGRLRVVLADWRTPPADIHALYPERLNLPAKTIAFVEFL 289 >gi|226944184|ref|YP_002799257.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226719111|gb|ACO78282.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ] Length = 305 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V G F+ AA ++ S++S+ +S LE +G +L R R L LT +G Sbjct: 13 ELEVFVRVIELGGFSAAARAFGMTPSAVSKLVSRLEQRLGTRLVNRSTRQLQLTPEGCAF 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + LE + E + P G+LR+ + G L +FL +PD+ + + Sbjct: 73 YERGVRILADLEEAERCAGEHTA-PRGRLRVNANVPFGHRFLLPLTPKFLERHPDVTLDI 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L ++ IDI D A+R P++SS+L+ RKL M AP YL + P + Q+L Sbjct: 132 VLTDEVIDILEQRTDVAVRA-GPLKSSNLMARKLGQTRMTIVGAPGYLAHHGTPTTPQDL 190 Query: 187 DKHN 190 +HN Sbjct: 191 LQHN 194 >gi|88797432|ref|ZP_01113021.1| Transcriptional regulator [Reinekea sp. MED297] gi|88779604|gb|EAR10790.1| Transcriptional regulator [Reinekea sp. MED297] Length = 303 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 10/292 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW++ R F + A +GS + A + L L+QS++ RQ+S E E+G+ LF R A GL +T Sbjct: 12 LRFDWNRARAFLLTAETGSLSAAGKALGLTQSTVGRQVSAFEAELGVALFERSATGLNIT 71 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + + E+S G + I+ T LL + E + P Sbjct: 72 PTGLRLLERLRGMGSAANEFYLAATEASETLEGHIAISATQLAATYLLPPLVMELVRKNP 131 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ N+ D+ AD A+R +P Q LI RKL YA+ Y++ Sbjct: 132 GLSVDLMATNQSSDLRRREADIALRAYRPDQ-PDLIARKLRDDTYRFYASHDYVERMAGR 190 Query: 181 LSIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 L+ + + I F I ++ ++D + N + + + G Sbjct: 191 LNAKHSQELTFIGFDQAHRIVDLLQSQGLNVSLDN-------FAIASNEHPAHWELTKQG 243 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +GI L+ + P + ++ D+ P+ ++ +K + +L+ +F+ Sbjct: 244 AGIGLMLSEVGDQEPRVANVLPDIRLPTSELWIVAHRDVKTSRRLRLVWDFL 295 >gi|134293556|ref|YP_001117292.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136713|gb|ABO57827.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 317 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 18/295 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G Sbjct: 6 NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGENY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R ++ ++ + E + +P+G LR+ + +G + + L + YPD+ I+L Sbjct: 66 LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPTLTRYHAQYPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A+P Y+ P +L Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVTRHGAPEHPTDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H +T L W+ + + ++ +Q N+ S+ G GI +LP Sbjct: 186 GAHACLT---LCTPAFPTHEWVLEGADGVEQIHVAGPVQTNTAESLALAIRDGLGIGMLP 242 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 Y D + LVR++ I VY YP R F+ K R W Sbjct: 243 LYSAIDALQDGTLVRVLPSHILQKMNVYALYPS-----------RRFVDAKVRTW 286 >gi|330901545|gb|EGH32964.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. japonica str. M301072PT] Length = 293 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 130/281 (46%), Gaps = 11/281 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +A S S + AA +L LS +ISR+++ LE ++G++L +R R ++LT +G Sbjct: 1 MFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFLPH 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + H ET + L+ + SG LR+ GQ ++ L + P + I L L Sbjct: 61 AKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLTLS 120 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI+ D AIR+ I+ S+L+ R L A+P YL P + EL +H Sbjct: 121 DSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARHGRPSILDELRQH 179 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 IT M + ++ + P+ NS ++ C G G+A+L + V Sbjct: 180 PCITL-----HAMPYWPFIREGE-PVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDV 233 Query: 250 KD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286 + +L++I EDVI +V P + +++ F Sbjct: 234 QQEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLF 274 >gi|221197379|ref|ZP_03570426.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221204053|ref|ZP_03577071.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221176219|gb|EEE08648.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221183933|gb|EEE16333.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 297 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 126/293 (43%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 12 NALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + L VK L I+TT L L +F +PDI ++ Sbjct: 72 YFSDVQRALHAIADATDRL----VKRRATLTISTTPSFASKWLIPRLAQFTDAHPDIDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIR KP L L + + A +P L P S + Sbjct: 128 VIADQQLATFRHDGVDLAIRYGKPPFGKHLAAHALFPLDVCAVCSPALLA---APASPRA 184 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P ++A + P+ L+ N + V G GIAL Sbjct: 185 LAGHVLLHDAHDLWPA------FIAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALA 238 Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 D +V+ + R+ + D P S Y YP ++ + R+++ A Sbjct: 239 TDPLVERDVAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIAVMRDWMIGAA 291 >gi|218710114|ref|YP_002417735.1| hypothetical protein VS_2135 [Vibrio splendidus LGP32] gi|218323133|emb|CAV19310.1| similar to transcriptional regulator, LysR family [Vibrio splendidus LGP32] Length = 319 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 8/262 (3%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GSF AEQ ++ +S IS+QIS LE E+ ++L R R L+LT G+++ ++ L Sbjct: 17 GSFVKVAEQRNVDRSVISKQISRLEEELDVRLLNRTTRSLSLTAAGNEMVNQAHQLRALL 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 T+ Q +P G LRI ++ G+ +Q + F YPD+ +L L+++ +D+ Sbjct: 77 NDTRRLAQNYHAEPRGLLRITSSTMFGRQYVQQAIAVFQKQYPDVDFELRLEDRIVDMVK 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 + D R+ KP ++SSLI RK+ + A+P ++ E +I++L+ + Sbjct: 137 EGFDIGFRIGKP-KNSSLISRKIARSRLLIVASPEFIAQHGEINTIEKLESLPATIYA-- 193 Query: 198 IPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253 P + D F+++ + + +VN I + + GS +A++ +++D + Sbjct: 194 APGLLIDKFSYVDQEGQAQHFQLNAAYKVNDVEMISKSALTGSTLAVVTAQMIEDEVLSG 253 Query: 254 NLVRIMEDVITPSF-TVYFCYP 274 LV IM + F T Y YP Sbjct: 254 ELVPIMTHLNLDDFGTFYAVYP 275 >gi|188492459|ref|ZP_02999729.1| transcriptional regulator, LysR family [Escherichia coli 53638] gi|188487658|gb|EDU62761.1| transcriptional regulator, LysR family [Escherichia coli 53638] Length = 302 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SCIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ED T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|27375363|ref|NP_766892.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27348499|dbj|BAC45517.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 325 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 5/195 (2%) Query: 3 FDWDK---LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 FD ++ + VF V G FT AA +L L+ S +S+ IS LE +G +L R R LTL Sbjct: 4 FDTNRSAEMEVFVRVVDLGGFTQAARKLRLTPSGVSKLISRLEVRLGSRLINRTTRKLTL 63 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 TE+G ++ + S P G+L + + I G + + FL + Sbjct: 64 TEEGQAFYQRAVRIL-AEMEEAEREAASGAAPRGRLTVNSNIPFGMLHVMPLIPRFLEQH 122 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PD+ + L+L + ID+ + AD AIR+ P+++S L+ RKL T M AP+YL Sbjct: 123 PDVTLDLVLTDTLIDLMQERADVAIRV-GPLRASRLVARKLGTSRMVVVGAPNYLARFGT 181 Query: 180 PLSIQELDKHNLITF 194 P +L H I + Sbjct: 182 PKIPADLADHRGIGW 196 >gi|238786984|ref|ZP_04630784.1| transcriptional regulator [Yersinia frederiksenii ATCC 33641] gi|238724772|gb|EEQ16412.1| transcriptional regulator [Yersinia frederiksenii ATCC 33641] Length = 298 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 1/189 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GSF+ A QL +S S+ISR +S LE + I+L R R L L++ G ++ Sbjct: 1 MAIFVKVVETGSFSAVARQLGVSTSAISRSVSRLEKALTIRLLQRTTRKLRLSDSGEEVF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + + + +P G +RI+ +G+ ++ +L EFL Y I +QLI Sbjct: 61 KRCNAMLNAANSVMEVGGQYNQEPEGLIRISVPKAVGRFVIHPHLPEFLRRYSKINVQLI 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ ++ D AIR+ ++ R+L+ I A P YL PL +L Sbjct: 121 LDDRYVDLIDEHVDLAIRITNQ-PPPGMVGRQLMNIEHLLCATPEYLATHGVPLHPHDLA 179 Query: 188 KHNLITFGD 196 H+ I G+ Sbjct: 180 HHSCIYLGE 188 >gi|323166519|gb|EFZ52282.1| hypothetical protein SS53G_3197 [Shigella sonnei 53G] Length = 307 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITIEFL 291 >gi|209522145|ref|ZP_03270790.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209497413|gb|EDZ97623.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 305 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 132/303 (43%), Gaps = 21/303 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F VA GSF AA QL++S S ++R +S LE +GI+LF R R + LTE G+ Sbjct: 5 FQAMQAFVKVADVGSFAQAAAQLNVSTSVVTRHVSSLEQHLGIRLFQRTTRKVVLTEAGA 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE + +S + +G LR+ L E+ +P + + Sbjct: 65 QYADGCRVLLAELEEVESRATTASREVAGDLRVVALGSFSLVRLTPLFAEYQARFPQVNL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L K +D+ D I I+S SL+ R+L+ H AA YL P + Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLIDSHAVPVAAAAYLAQAGHPQTPA 184 Query: 185 ELDKHNLIT--FGDLIPK-CMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS 239 EL H LI F P N A GE + VNS + Q Sbjct: 185 ELAGHRLIAAPFDTTGPMWIFRKGNGDAASASDAGESIAIDASFTVNSMIMQKQAVRGAM 244 Query: 240 GIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIALLP +V+D + LVR+++D V+ V YP R F+ K Sbjct: 245 GIALLPLEMVEDELRDGTLVRVLDDYTVLNGDVAVSLVYPS-----------REFVPRKV 293 Query: 295 RDW 297 R++ Sbjct: 294 REF 296 >gi|163759014|ref|ZP_02166100.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] gi|162283418|gb|EDQ33703.1| transcriptional regulator, LysR family protein [Hoeflea phototrophica DFL-43] Length = 293 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 43/305 (14%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FD L F VA SF+ AA+ L +++ ++SR I+ LE E+GI+L +R + L+ Sbjct: 5 FDLRLLTTFAAVAEHQSFSRAAKALGVAKGTVSRTITQLEAELGIELVHRTTHHVALSTA 64 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L+ T L+T+ L E +PSG LRIA + G +L + F +P++ Sbjct: 65 GAALYERTRGHLSALQTSVSNLPELEDEPSGLLRIAAAPEFGVLVLPAIISAFSQRFPNV 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + L + D+ + D AIR+ ++ S+L R++ YAAP Y+ P Sbjct: 125 RFDIRLSTDNADLVREGYDLAIRVATGSLKDSALKMRRIARGTTAFYAAPAYIARQGRPK 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV----- 236 + E +H+ + ++ D + +QYCV Sbjct: 185 RLLE-KRHSWVLHAGIVQLLKLDADG------------------------VQYCVDDFFL 219 Query: 237 ------LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-----CYPEALKNTGKLKA 285 G G+ LLP ++ + + ++E+V V F YP + + K+ A Sbjct: 220 ARDLMREGVGVGLLPTFMARSDLK-EGLLEEVSLQEPHVLFGDLVVLYPSSGQTPKKVTA 278 Query: 286 FRNFI 290 FR+F+ Sbjct: 279 FRDFL 283 >gi|152971827|ref|YP_001336936.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956676|gb|ABR78706.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 308 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 14/300 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR G+ + AA +L ++ S+S + LE +G LF R R + LTE G Sbjct: 6 YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T+ LE + +++ + +PSG +RI + +L+ + F YP IQ+ Sbjct: 66 QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + + ++I + D IR ++ + + + YA+ YL P Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAMPA 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H LI + ++P + D TV+ P L N + G Sbjct: 186 DLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI L + I++ P+ + +MED VY YP+ T ++KA +F+ + A D Sbjct: 240 GIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMYAAD 299 >gi|119468826|ref|ZP_01611851.1| transcriptional regulator, LysR family protein [Alteromonadales bacterium TW-7] gi|119447478|gb|EAW28745.1| transcriptional regulator, LysR family protein [Alteromonadales bacterium TW-7] Length = 298 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 141/293 (48%), Gaps = 14/293 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VA + + + A +L LS S I LE +G+KL +R R ++LTE+G + Sbjct: 4 EHLKLFVRVASTHNISSAGAELGLSPPVASMHIIKLEESLGVKLIHRTTRRVSLTEEGRE 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ + + + + + S P G +R+A G+ + LK F+ +P++++ Sbjct: 64 FLPHAEEILNAINSAKAAVGAGSFTPQGTIRVAAPSSFGRMHIVPALKAFIDQHPELKVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR + S+L+ RKL H A+P Y+ EP + Q+ Sbjct: 124 LRQSDSIVDMVEGGFDIAIR-NAELNDSTLVARKLARDHRIICASPGYIAEHGEPKTPQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L HN I + D+ W I + ++ +++++ SI C+ +GI + Sbjct: 183 LLNHNCIKLIGI------DY-WSFKTPNGIEKVKVKGSIRIDNGESIRDACINDAGITIS 235 Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 + + LV+I++D + + ++ YP + K++AF +F F+K Sbjct: 236 SIWCAHNALKEGTLVQILKDYPMDSNAAIWAVYPSSRLLAPKVRAFIDF-FIK 287 >gi|114777052|ref|ZP_01452072.1| transcriptional regulator, LysR family protein [Mariprofundus ferrooxydans PV-1] gi|114552573|gb|EAU55033.1| transcriptional regulator, LysR family protein [Mariprofundus ferrooxydans PV-1] Length = 295 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 125/289 (43%), Gaps = 14/289 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD LR+F VAR GS + A +L + S++SR++ LET++G++L R G LT Sbjct: 1 MNWDDLRLFLAVAREGSISGGARKLGVQHSTVSRRMQTLETKLGVRLIERKKSGYELTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + H++ L + G+LR++ + +L +F PD+ Sbjct: 61 GESLKIAACRMEHEVLEVDGFLGGRDNRLIGELRVSAISSMASGILMPMFAKFSRNNPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + +++ NK+I + AD AIRL S +LI +L T+ YA+ YL R Sbjct: 121 DLHVLVSNKNISLVERDADVAIRLTN-TPSDALIGTQLATVSSTIYASHRYLDQLR---- 175 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 E K + + C +W T G+ V+ L G+A Sbjct: 176 -SEGGKPKWLG----VSCCAFHQSW--TKKSAAGQRH--NFFVDDALLTTAALKQHMGLA 226 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LP +I P L R + ++ + LK T ++ AFR+ + Sbjct: 227 YLPCFIGDSEPELARYCAPDPQMNLGLWLLFHPDLKRTARVLAFRDHMI 275 >gi|157960385|ref|YP_001500419.1| LysR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845385|gb|ABV85884.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC 700345] Length = 304 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 133/288 (46%), Gaps = 13/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V+A GSFT AAE+L S+S +S+Q++ LE +G+ L R R LTEQG + Sbjct: 10 VRAFTVIAEKGSFTLAAEKLGCSRSHLSKQLTQLERYLGVTLITRTTRAQRLTEQGQFFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 +E + + + GK+ I +G+ ++ + +F+ L+P+I I L Sbjct: 70 ERCQHALDVMEQAVAKTVDDAHNLQGKININCVGGYIGEEIVNQLVNDFMSLHPNIHIHL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ +D D R+ + ++ S L+ RKL+ I A+P Y+ P + +EL Sbjct: 130 DFSSQRVDLVLDEFDLVFRMGE-LEDSGLVARKLMDIANCTLASPRYIAKHGRPENPKEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 H +T + +N+ D+ E I+ + +M+ L G+GI L Sbjct: 189 KSHACVT------GSVYHWNYHRRSDKTQKTEVTITGALLCKNGRVMKSSALAGNGIVRL 242 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P+ N LV + +D +Y Y + +L+ F F Sbjct: 243 PEIYCSAELNKGELVHVFDDWTISDTPLYLLYSKDQFQPARLRQFIEF 290 >gi|77457164|ref|YP_346669.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381167|gb|ABA72680.1| putative LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 322 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 16/293 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT AA QL + +++SR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E E+ +P+G+L++ T +GQ+ + + + +PD+ L Sbjct: 66 LLRCEQILAYVEEAEAEASEAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSIQ 184 + N+ D+ + D +I L + + S + ++L + A+P Y+K C + S Sbjct: 126 TMANRVPDLLDEGYDVSIVLARELPDSGFVSQRLGITYSIVCASPAYVKANGCAQKPS-- 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240 +L H + L+ + W D P G+ + S VNS ++ G G Sbjct: 184 DLLNHACLR---LVSPVIPLEKW--AFDGPDGQEMVTINSSPFLVNSADAMKSAITSGMG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +LP Y + N +LVR+M + + +Y YP K+K + ++ Sbjct: 239 VGVLPVYAAIEGLRNGSLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291 >gi|86145043|ref|ZP_01063375.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222] gi|85837942|gb|EAQ56054.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222] Length = 298 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 137/303 (45%), Gaps = 33/303 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA SFT AAE L +S+ +SR + +E + +L +R R ++LT G Sbjct: 7 MRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTAAGEIAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ H+ ++ + SG +RIA I L QN+L +++F +P+I ++L Sbjct: 67 QRCEKILHETAELEVTSLNQTDDLSGVIRIAAPIGLTQNMLLDVVEQFTERHPNITVELF 126 Query: 128 -------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 L ++ IDI++ Y D +P SLI RKL+ I A+ YL EP Sbjct: 127 ASDRFAQLVDERIDIALRYTD------QP--DDSLIARKLMEIDSVVCASQVYLDKYGEP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239 +++ L +HN + + W D +S ++ N + + G Sbjct: 179 ETVEALRQHNCF-------RHLSVSKWDFVKDNQHYSVEVSGTIKANDVGVLTRAAQHGK 231 Query: 240 GIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GI LP + NP L RI++D ++PS ++ Y L + +L R FI A Sbjct: 232 GIVRLPCDLA--NPLIAEGKLKRILDDFVSPSSVLWAVY---LSRSYQLPVVRQFIDFAA 286 Query: 295 RDW 297 W Sbjct: 287 EVW 289 >gi|271499419|ref|YP_003332444.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270342974|gb|ACZ75739.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 319 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 134/291 (46%), Gaps = 20/291 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F +A GS T A + LS ++S++++ LE +G++L R R L LT +G Sbjct: 5 DDLLFFSRIAALGSLTAVARESGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTPEGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + H++E + +++ + + G+L + + G+ + + EF L+P++++Q Sbjct: 65 YAEGALPILHEIEELESQVRRNQLTLRGRLTVNASFGFGRRHIAPLISEFARLHPELEMQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +++ D IR P S L+ +L+ A+P YL C P ++ + Sbjct: 125 LQLTSQPLNMLDAGVDIDIRFGAP-PDSRLVAHRLMANPRVLCASPAYLARCGTPKTVAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238 L +HN + ++ + D+ W D R G L N IM+Y + G Sbjct: 184 LAEHNCL----VLRQYESDYGLWRFYRDGHEFTHRAFGN-----LSANDGEVIMRYALDG 234 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI L + V+ N LV ++ D I P +Y Y + ++ AF Sbjct: 235 HGIILRSLWDVRSWLGNGRLVALLPDYIMPEADIYAVYQQRRHVPARISAF 285 >gi|170703181|ref|ZP_02893990.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170131913|gb|EDT00432.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 303 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 132/290 (45%), Gaps = 11/290 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE + ++L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ + ++ P G +R+ N + L +F YPD+++ L Sbjct: 67 ERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALPDFHARYPDLRVVLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S +L Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRIGELAQINCASPAYLARHGTPRSPDDLP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D G + S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSTRTGRELDW-EYADMDTGALQTVKMRSSVAVNSSQAYLACCLAGLGMIQ 242 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + ++ +LV ++ + V +P +++ F +++ Sbjct: 243 APREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNGRHLAPRVRIFVDWL 292 >gi|167569585|ref|ZP_02362459.1| probable transcriptional regulator [Burkholderia oklahomensis C6786] Length = 290 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 7/244 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V G F+ AA ++ S++S+ ++ LE +G +L R R LT +G + Sbjct: 1 MFVRVIELGGFSAAARACGMTPSAVSKLVTRLEQRLGTRLVNRSTRQFQLTPEGCAFYER 60 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + LE + + P G+LRI + G + L + EFL L+PD+ + ++L Sbjct: 61 GVRILADLEEAE-RCASAYTTPRGRLRINANVPFGHHFLLPLVPEFLELHPDVTLDIVLT 119 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ IDI D A+R P++SS+L+ RKL M AP YL P + +EL H Sbjct: 120 DEVIDILEQRTDVAVRA-GPLKSSNLLARKLGDTRMVIVGAPGYLTRHGMPATPEELLAH 178 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 N + + W L + + P Q + ++ + G G+A L + Sbjct: 179 NRLGANYARARS----GWPLRNANEDVVLPVTGNAQASDGEALRHLALAGVGLARLAAFQ 234 Query: 249 VKDN 252 V+D+ Sbjct: 235 VRDD 238 >gi|148549734|ref|YP_001269836.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148513792|gb|ABQ80652.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 316 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD L+ F VAR+ + AA++L + +++SR+IS LE +G LF + G LT Sbjct: 10 ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + L ++ S V SG +R+ T G + L F+ YP Sbjct: 70 AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + ++ I +S AD I L +P + + KL + YA YL N Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDNHAPI 188 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L KH I++ D + E +LA + S + Y + +Q G G Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSE-LLYLANLIPNASAHLRSTSVIAQYTAALQ----GRG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ +P LV ++ + I + + E L+ ++ ++I Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293 >gi|50119236|ref|YP_048403.1| putative DNA-binding transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49609762|emb|CAG73196.1| putative temperature-dependent LysR-family regulator A [Pectobacterium atrosepticum SCRI1043] Length = 311 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 116/260 (44%), Gaps = 30/260 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S S++S+ +S LE E+ IKL R R + LTE G + Sbjct: 7 MSVFARVVECGSFTAAARQLQMSVSAVSQTVSKLEDELQIKLLNRSTRSIGLTEAGKIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H+ +L + P G LRI ++ + QN+L L YP + + L+ Sbjct: 67 HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q S+L ++L ++ M AA YL P D Sbjct: 127 TGIPAPDLIADGLDIVIRV-GALQDSTLFSKRLGSMPMVVCAAKSYLAQHGTP------D 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQY 234 K P M +F+WL RP E P +V N +++++ Sbjct: 180 K----------PADMVNFSWLEYSVRPDSEFELIAPEGISTRVTPQGRFVTNDPQTLVRW 229 Query: 235 CVLGSGIALLPDYIVKDNPN 254 +G+GIA +P + D N Sbjct: 230 LKIGAGIAYIPLMWIVDEIN 249 >gi|83748239|ref|ZP_00945265.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207743507|ref|YP_002259899.1| hypothetical protein RSIPO_01686 [Ralstonia solanacearum IPO1609] gi|83725080|gb|EAP72232.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206594905|emb|CAQ61832.1| hypothetical protein RSIPO_01686 [Ralstonia solanacearum IPO1609] Length = 297 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 139/284 (48%), Gaps = 24/284 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V +GS T AAEQL + S +SR + LE ++ L R R L LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + ++ + + +P+G+LR+ + +++ + +F YP Sbjct: 61 DEGAAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++L ++ ID+ + D AIR+ ++ S+L R+L T + A+P YLK P Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GTLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------ISCLQVNSYLSIMQY 234 +I++L H L+ F + P+ + +W P+ P + L+ +S ++ Q Sbjct: 180 RTIEDLRHHVLLGF--VQPESLN--HW------PLRGPHGDRLRIVPTLKASSGETLRQL 229 Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMED----VITPSFTVYF 271 + G+G+ L D++ + +LV+++ D ++ P VY+ Sbjct: 230 ALQGAGLVCLADFMTAADRRAGHLVQVLPDATVEILQPIHAVYY 273 >gi|297537387|ref|YP_003673156.1| LysR family transcriptional regulator [Methylotenera sp. 301] gi|297256734|gb|ADI28579.1| transcriptional regulator, LysR family [Methylotenera sp. 301] Length = 307 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 20/296 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A GSF+ AA +L ++ +S+ ++ LE ++G++LFYR R L LTE G Sbjct: 10 FVRSAELGSFSAAARRLSMTPGGVSKNVAKLEADLGVRLFYRSTRSLKLTEAGEHFLAQV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++T +P+G L++A + G++ + L EFL LYP I+ DN Sbjct: 70 TGGLDAIQTAIANASREGGQPAGTLKVALGLAFGRDHILPLLGEFLTLYPAIKPDWRFDN 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D AI + + ++ R+L IH+ A+P YLK+ P + EL K + Sbjct: 130 RQVDLIGEGFDVAIG-GGIVLAPGVVVRELAPIHLVLVASPAYLKSKFMPQTPAELYKLD 188 Query: 191 LI-----TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + T + P ++ AT++ +PR++ +N ++ + GIA + Sbjct: 189 ALVRYSQTSNQITPWNLKTVAGNQATIEL---QPRVT---LNDPEALCHAAMASLGIAHV 242 Query: 245 P-DYIVK--DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 P + ++ ++ LVR++ D T ++YF + + K + F +FI K R Sbjct: 243 PMPHALQHLESGKLVRVLPDWYTEHGVMSLYFSAKKLMP--AKTRVFVDFIVDKFR 296 >gi|260596704|ref|YP_003209275.1| hypothetical protein CTU_09120 [Cronobacter turicensis z3032] gi|260215881|emb|CBA28405.1| hypothetical protein CTU_09120 [Cronobacter turicensis z3032] Length = 311 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 15/250 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F V SF+ A + +S S ISR + LE +G +LFYR+ R + TE G Sbjct: 12 LQLFISVFDGQSFSAVARREGVSASMISRTVRQLEEALGQQLFYRNTRAVIPTEAGRLFA 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ELQ+ S++PSG LRI + GQ + L YP +Q+ L Sbjct: 72 QYARGITEQFSEARRELQDRSLEPSGLLRINAPVFFGQRHIAPWLTGLAERYPRLQLALT 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D D D +R+ + SS R + AAP YL P S E Sbjct: 132 QTDDYVDPHRDATDLIVRIGT-LTDSSFHARVFCEQRYYFAAAPRYLARYGAPASPAEFH 190 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGI 241 H + + G P WLA R GEP + + L N+ S++ + G G+ Sbjct: 191 AHQCLVYSGSSGPN-----RWLA---RKPGEPWVHYPVSARLVSNNAHSLLTAALDGMGL 242 Query: 242 ALLPDYIVKD 251 L PD++ + Sbjct: 243 VLFPDWMTGE 252 >gi|254561342|ref|YP_003068437.1| LysR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254268620|emb|CAX24579.1| transcriptional regulator, LysR family [Methylobacterium extorquens DM4] Length = 320 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 26/300 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D++ VF VVA + SF AA++L LS++++S+ ++ LE +G +LF+R +R L LTE G Sbjct: 6 DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + +++ P G++R+A + G + L EFL + + Sbjct: 66 RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L + +D+ D +R+ + SSL R+L + A P YL P Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLARYGPPQHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233 ++L C+ + +L T DR GE P L+ N+ +++ Sbjct: 185 EDLKAR----------ACL-GYAYLPTPDRWPFTNAAGETVTIVPE-GPLRANNADALVP 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A+ PD+ + ++ L R+M D P + P L ++ A F+ Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292 >gi|152997713|ref|YP_001342548.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150838637|gb|ABR72613.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 304 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 134/277 (48%), Gaps = 15/277 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F VA +GSF AA+ +S ++S++IS LE ++G++L +R R L+LTE G L+ Sbjct: 6 LTLFVNVADTGSFNKAAQLAGMSTPALSKRISKLEQDLGVQLIHRTTRRLSLTEAGESLY 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + S +G ++++ G+ LL + EF YP+I + + Sbjct: 66 VHAKNIEGQVSDAIASVSAFSQGLTGTIKMSVPTISGELLLAEAIAEFCQKYPNITVDMR 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N +D+ + D AIR K ++ SSLI + L+ + +P Y++ E +++ L Sbjct: 126 LENDFVDLVGEGLDLAIRTGK-LEDSSLIAKPLIQSNWVVCCSPSYIERHGEVTNLEALK 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP------RIS-CLQVNSYLSIMQYCVLGSG 240 HN + + + F+W T + +G+ RIS N+ ++ + + G G Sbjct: 185 DHNCLAY---TYQAQGSFDWRFT-KQGVGKKTVEESVRISGSFATNNAQALRKAALAGFG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 I +P V ++ LV I+ VY YP Sbjct: 241 IVYVPRCCVYEDLMKGTLVAILPQYKPRQLGVYAIYP 277 >gi|146284551|ref|YP_001165504.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145320684|gb|ABP62830.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 275 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 6/261 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 + F VAR SFT AA QL +SQS++S + LE ++G++L R R +++TE G +L Sbjct: 10 QAFIAVAREKSFTKAAAQLGVSQSALSYTVRTLEADLGLRLLTRTTRSVSVTEAGERLLS 69 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ++E+ L KP+G +RI +L L +L YPDI I++I Sbjct: 70 RVGPHFDEIESEIAALSGLREKPAGTVRITAVEHAADTILWPKLVPVMLEYPDINIEIIS 129 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + DI + D +RL + + + AP Y P + ++L+ Sbjct: 130 EYGLKDIVAERYDAGVRLGEQVDKDMVSLPLARDFRFAVVGAPSYFMGKAFPGTPRDLND 189 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247 H+ I +P + W D + RI S +++M+ L G G+A LP Sbjct: 190 HSCIRL--RLPTHGGFYTWEFRKDETEIKVRIDGRATFSTINMMRQAALDGLGLAYLPLD 247 Query: 248 IVK---DNPNLVRIMEDVITP 265 V+ +N LV+++ D P Sbjct: 248 TVENYLENGMLVQVLTDWCPP 268 >gi|116248839|ref|YP_764680.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253489|emb|CAK11881.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 300 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 128/262 (48%), Gaps = 14/262 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63 + VF + A SF+ A +L +S S++S+ ++ +E +G +L R R +TLT +G Sbjct: 1 MEVFVMAAELQSFSAAGRRLKMSPSAVSKLVTRIEDRLGTRLLVRSTRTMTLTPEGEVYL 60 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S+ R+ +++ ET QI + P G LR+ ++ G+ L + FL LYP++Q Sbjct: 61 SRARRILTDIT---ETEQIVAGGGKMIPRGLLRVNASVGFGERHLLALIPAFLELYPEVQ 117 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + L + I + + D AIR + SSL RKL+ A+P YL P + Sbjct: 118 LDISLTDGIIGLIEERTDIAIR-SGAMDDSSLKARKLLESRRVIVASPAYLDAKGIPKTP 176 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242 Q+L HN +F + + ++ + + P VNS + + + C+ GSG+ Sbjct: 177 QDLANHNCFSFN--FRRSLNEWPFRNPGTSEVYRLPVTGNTAVNSGMVMRRLCLSGSGLG 234 Query: 243 LLPDYIVK---DNPNLVRIMED 261 + + V+ D L+ ++E+ Sbjct: 235 RVGQFHVQPDIDAGKLIPLLEE 256 >gi|325528891|gb|EGD05929.1| transcriptional regulator, LysR family protein [Burkholderia sp. TJI49] Length = 309 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%) Query: 23 AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 AA QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ Sbjct: 22 AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFYRECAEVVGRVNELTD 81 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 +++E P+G+LRI L EF YP IQ+ +I++++ +D + D Sbjct: 82 QMRELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVIVNDRVVDPIEEGFDI 141 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202 A ++ PI S SLI+R+L T+ A+P YL+ P ++L +H + + Sbjct: 142 AFQIFPPI-SESLIERRLFTVRRLFCASPAYLEQHGAPQHPRDLLQHTTALYSGYPSRN- 199 Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258 W T + E + ++ NS + Y + G G+ LP + D LV I Sbjct: 200 ---RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPTLVASDALVAGTLVPI 256 Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + YP + K+KA F+ Sbjct: 257 LTDYHLAPLSFAAVYPATQRQALKVKALVEFL 288 >gi|296536969|ref|ZP_06898985.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296262702|gb|EFH09311.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 297 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 15/298 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F ++AR G F AA + +S S +S+ ++ LE +G++L R R + TE G + Sbjct: 7 DQLEIFALIARRGGFRAAAAERGVSSSLMSQTMASLEQALGLRLLNRTTRSVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R ++ EL + +PSG LRI +++L F+ +P +Q++ Sbjct: 67 LLRRLGPALDEIRLALAELDQLREQPSGTLRINAPAPAAEHILCPLAFAFMAAHPGVQVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D IDI D +R + ++ + + AAP YL+ P S + Sbjct: 127 IVSDAAIIDIVAQGFDAGVRFGRQLEQDMVAMPLGPPLRYAIVAAPEYLRRRGVPRSPAD 186 Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H+ I G L E + P L ++S +Q + G GI Sbjct: 187 LMAHDGIRRRYPGGSLARWRFEKAGEAVELTPP------GRLTLSSAHQELQAALAGQGI 240 Query: 242 A-LLPDYI--VKDNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFIFLKAR 295 A + DY LV I+ D +P+ +F YP + ++AF +F+ AR Sbjct: 241 AHVFEDYARPALAEGRLVEILAD-WSPTLPGWFLYYPNRRHGSAAMRAFLDFVRRSAR 297 >gi|222112510|ref|YP_002554774.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221731954|gb|ACM34774.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 308 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 130/291 (44%), Gaps = 16/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VAR G + AAE LHL+QS++S+Q+ LE VG+ LF R + L+LT G + Sbjct: 13 LRAFCTVARFGGISRAAEALHLTQSAVSKQVQELERWVGVPLFERSRKRLSLTPAGERYE 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + S + +LE +EL S + G L ++ L L L + +P I + + Sbjct: 73 KAVSALLARLEAATLELITSGDE-GGALHLSVLPTLAAKWLIPRLPQLRAQHPQITLHFV 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186 D + DC+I + + +T + A P PL S Q++ Sbjct: 132 PYVHGYDFADPELDCSILFGDGHWPGA--RAHYLTGNDVALIGPRAGLAGAPPLHSPQDV 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H L+ +P + + V+ P+ P Q + + +I++ +G G+AL+ Sbjct: 190 ARHTLLRHVS-VPGAWQHWAEAHGVNGLDPLAGP-----QFDQFQTIIRAVSVGMGLALV 243 Query: 245 PDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIF 291 P +V+D + E + +T + CYPE+ L FR+++ Sbjct: 244 PRCLVQDEIAAGTVTEPLPGGGYTSDLGYWLCYPESRAQLATLVRFRDWLL 294 >gi|66046169|ref|YP_236010.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63256876|gb|AAY37972.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 294 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 11/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++L +R R +LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H ET + L+ + SG LR+ GQ ++ L + P + I L Sbjct: 66 PHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L A+P YL +P + EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARRGQPSLLDELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H IT M + ++ + P+ NS ++ C G G+A+L + Sbjct: 185 QHPCITL-----HAMPYWPFIREGE-PVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYW 238 Query: 248 IVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ +L +I EDVI +V P + +++ F Sbjct: 239 DVQQEIREGSLQQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLF 281 >gi|330954227|gb|EGH54487.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7] Length = 298 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 15/257 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+VF V SGS + AAE++ + S +SR +S LE ++ L R R + LT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++E+ + L S P+G+LRI + + ++ EF YP Sbjct: 61 EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHSIVPHVAEFRQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++L D+ ID+ D AIR+ + S+L R L + ++ A+P YL+ P Sbjct: 121 HIELELNSDDWFIDLLEQSTDIAIRI-GALSDSTLHARSLGSCLLNIVASPAYLQRHGSP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + +EL +H L+ F + E N W A DR +P IS S +++ V Sbjct: 180 KTAEELAQHVLLGFTHV-----EVLNQWPLRHAGGDRLPIKPSISA----SSGDTLRHLV 230 Query: 237 L-GSGIALLPDYIVKDN 252 L G GIA L D++ D+ Sbjct: 231 LEGVGIACLSDFMTCDD 247 >gi|323494931|ref|ZP_08100023.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323310895|gb|EGA64067.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 295 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 131/271 (48%), Gaps = 15/271 (5%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LH 67 +VF VA SGSFT A++L +S+ ++R I +E+ + +L +R R ++LT G L Sbjct: 8 KVFVDVATSGSFTATADRLEMSRPMVTRYIEAMESWLNARLLHRTTRKVSLTTAGEDCLE 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +++ K + +L + + SG +R+AT++ G + + +++FL L+P + I + Sbjct: 68 EV--KLWLKQAESLGDLANTGGELSGTIRLATSMSFGYSQVVPVIQQFLALHPKVSIDVD 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ-EL 186 L + D++ D AIR+ SLI + + A+PHYL N EP+S +L Sbjct: 126 LQDSVTDLTDSQIDIAIRIAS-TPDPSLIGKPIALCESVIVASPHYLANS-EPISTPGDL 183 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 H + + K + W T +SC L N +++ + G+A+ P Sbjct: 184 THHACLGY-----KNFQQHVWHLTKANLQQSVEVSCRLTANEATTLLNAALCHGGLAMQP 238 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 Y+V N L +++ D TVY Y Sbjct: 239 TYLVSQYLKNGQLKQVLPDWKPDDMTVYVLY 269 >gi|319763777|ref|YP_004127714.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|330823959|ref|YP_004387262.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118338|gb|ADV00827.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] gi|329309331|gb|AEB83746.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 304 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 143/293 (48%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F ++AR GS + AA + +S ++ S++++ +E+ +G++L R R L LT +G Sbjct: 10 EMAFFSLLARLGSLSGAAREQGVSTAAASKRLAQMESRLGVRLVSRTTRRLHLTAEGETY 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + +++ + + + P G LR+ T+ G++ + + F+ YP IQ+QL Sbjct: 70 LRHARRILAEIDAMEQLVADMQSTPQGLLRVNATLGFGRSHIAPLVPAFVRRYPQIQLQL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + ++ D D IR +P + +I R+L AAP YL P +L Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPARPADL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240 +H+ I + +D + V R G + +++ ++L+ + + + G G Sbjct: 189 QQHDCIDI-----RQGDDAH---GVWRFAGARKHESVRLRNHLATNDGEIAVNWALAGLG 240 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + ++ V + LV++++D TP ++ YP+ T +++AF +F+ Sbjct: 241 LVMRAEWDVARYLRSGRLVQVLQDWQTPPADIHAVYPQRHAATTRVRAFVDFV 293 >gi|300724591|ref|YP_003713916.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC 19061] gi|297631133|emb|CBJ91824.1| putative transcriptional regulator (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 252 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 3/191 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +GSF+ AA QL + S+ISR +S LE E+G +L R R L L+E G ++ Sbjct: 3 EMAIFAKVVETGSFSEAARQLAATPSAISRSVSRLEKELGTRLLQRTTRKLRLSESGQEV 62 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + S +P G +RI+ +G ++ ++ FL YP + + L Sbjct: 63 YEHCLNMVNAAQEVMAASGNFSHEPRGMIRISVPKAVGHFVVHPHIPAFLAQYPQVNVNL 122 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LD++ +D+ D D AIR+ +P L+ R+L I A P YL P + Sbjct: 123 RLDDRYVDLIDDQIDLAIRITDQP--PPGLMGRRLSNIWHMLCATPEYLAEHGTPQHPHD 180 Query: 186 LDKHNLITFGD 196 L HN I G+ Sbjct: 181 LKTHNCIYLGE 191 >gi|194430021|ref|ZP_03062528.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|194411948|gb|EDX28263.1| transcriptional regulator, LysR family [Escherichia coli B171] Length = 314 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 15 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 75 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 194 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 239 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 240 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298 >gi|190891899|ref|YP_001978441.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190697178|gb|ACE91263.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 304 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 135/301 (44%), Gaps = 40/301 (13%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+ Sbjct: 15 LAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERTSRGVILTEAGTDYA 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + LQ + + + +L +A G L + F+ +P+I + Sbjct: 75 RAIAGALAEIRSA--SLQAMTKQHNDQLNLAILPTFGTRWLMPRIPRFVARHPEITLNFA 132 Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 D D D AI + +P +S+ L++ + + A+P +L + Sbjct: 133 TRIGLFDFDRDDIDMAIHIGQPDWPGAESTFLMEEMVAPV-----ASPSFLSS------- 180 Query: 184 QELDKHNLITFGDLI----------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 H ++T DL+ P F VD G P ++ + S+ Q Sbjct: 181 -----HPILTAEDLLRLPLLQMASRPAAWSHFFESLQVD---GTPS-QAMRFEQFSSVAQ 231 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 C+ G G+AL+P +++ N LV+ + + Y P + K+ + AFR ++ Sbjct: 232 ACIAGLGLALMPVFLIDSELANGQLVQALPHQVKSPSAYYAVAPLSRKDFRPVVAFRAWL 291 Query: 291 F 291 Sbjct: 292 L 292 >gi|113867777|ref|YP_726266.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113526553|emb|CAJ92898.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 317 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 15/252 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR+GSF+ A + SS++RQI LE E+G+ LF R R L TE G Sbjct: 8 ENLATFVDVARAGSFSAVARRKGQVASSVARQIDALEREMGVALFTRSTRALVRTEAGDL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + +L T+ + SG+LR+A + + +L YP + ++ Sbjct: 68 LFERATRILQELNETRDAVTALEQGVSGRLRVACLPAFARRHVVPHLGSLYAQYPGLTVE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D ++ D IR+ + SSLI R++ + A P YL+ PL +E Sbjct: 128 LELTDRVVDPVLERFDVVIRVGQQA-DSSLIARRIASQRYIVCATPAYLQAHGRPLHAEE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNS-YLSIMQYCVLGSG 240 L H LI M + V RP + C ++ LS++Q G G Sbjct: 187 LAHHRLIDRAH--STSMRGWR---EVLRPAHAASAAFAMECDDCDARRLSVLQ----GLG 237 Query: 241 IALLPDYIVKDN 252 IAL+PD+ V ++ Sbjct: 238 IALMPDWSVGED 249 >gi|87198501|ref|YP_495758.1| LysR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134182|gb|ABD24924.1| transcriptional regulator, LysR family [Novosphingobium aromaticivorans DSM 12444] Length = 318 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 121/268 (45%), Gaps = 17/268 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF VV+ SFT AA +L SQS++S + LE +G+KL R R ++ TE G +L Sbjct: 9 LSVFLVVSEERSFTRAAVRLGTSQSAVSLAVRRLEEHLGLKLLARTTRSVSPTEAGEQLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L +P+G +RI T+ + LL + + YPDI++++ Sbjct: 69 ATLKPSLGDIRDRLTSLTRLRARPAGLVRITTSRHAAETLLWPAVDAVMARYPDIEVEIS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D +I D D +RL + ++ + R + M AP YL+ P ++L+ Sbjct: 129 IDGALTNIVADRFDAGVRLGESLEKDMVAVRIGPDLRMAVVCAPAYLEGREPPRGPRDLE 188 Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241 H I T G+L + W D R+ L VN ++ G G+ Sbjct: 189 AHRCINLRMATRGNL-------YAWEFEKDGRALNVRVEGALIVNDAGIAVRAAKAGHGL 241 Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITP 265 A L + +++D NLVR++ED P Sbjct: 242 ACVLEDEGVLRDIEAGNLVRVLEDWCPP 269 >gi|89899286|ref|YP_521757.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344023|gb|ABD68226.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 294 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 9/254 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + F AA+ + S++SR+I+ LE +G++L +R R + LTE G Sbjct: 5 NDMALFVEVVNAKGFRGAADATGVPNSTVSRRIALLEKAIGLRLLHRTTRRVELTEAGRI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + +L E +PSG LR + +D L + EF YP I+ + Sbjct: 65 YYERCRRIVDEARIAHEQLGEMLAQPSGVLRASLPVDFASIYLAPIITEFAQHYPGIRFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ + D AIR+ + S+LI R+L +I +A+P YL EP + Sbjct: 125 FDLTPRRVDLITEPFDVAIRVGD-LPDSTLIARQLASIKAEVFASPGYLAKAGEPQIPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L KH + F PK +W+ + +S V N+ + L G+ LL Sbjct: 184 LSKHECLGF----PKVE---HWVLQSGVHTEQVPVSGRYVLNNVGMFRRLATLDQGLILL 236 Query: 245 PDYIVKDNPNLVRI 258 P +V ++ L R+ Sbjct: 237 PRAVVAEDIQLGRL 250 >gi|15802212|ref|NP_288235.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 EDL933] gi|82543798|ref|YP_407745.1| transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|168749371|ref|ZP_02774393.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4113] gi|168758108|ref|ZP_02783115.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|168764256|ref|ZP_02789263.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|168770771|ref|ZP_02795778.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|168774886|ref|ZP_02799893.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|168782230|ref|ZP_02807237.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|191168833|ref|ZP_03030607.1| transcriptional regulator, LysR family [Escherichia coli B7A] gi|195937487|ref|ZP_03082869.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EC4024] gi|208816738|ref|ZP_03257858.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208818719|ref|ZP_03259039.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|256018013|ref|ZP_05431878.1| putative transcriptional regulator LYSR-type [Shigella sp. D9] gi|261227705|ref|ZP_05941986.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. FRIK2000] gi|261258130|ref|ZP_05950663.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. FRIK966] gi|291282979|ref|YP_003499797.1| putative transcriptional regulator LYSR-type [Escherichia coli O55:H7 str. CB9615] gi|293446171|ref|ZP_06662593.1| HTH-type transcriptional regulator yeaT [Escherichia coli B088] gi|331653203|ref|ZP_08354208.1| putative transcriptional regulator LYSR-type [Escherichia coli M718] gi|331673335|ref|ZP_08374103.1| putative transcriptional regulator LYSR-type [Escherichia coli TA280] gi|331677675|ref|ZP_08378350.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|332279050|ref|ZP_08391463.1| conserved hypothetical protein [Shigella sp. D9] gi|12515836|gb|AAG56788.1|AE005402_14 putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EDL933] gi|13361975|dbj|BAB35931.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. Sakai] gi|81245209|gb|ABB65917.1| putative transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|187769471|gb|EDU33315.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4196] gi|188016319|gb|EDU54441.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4113] gi|189000344|gb|EDU69330.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4076] gi|189355034|gb|EDU73453.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4401] gi|189360394|gb|EDU78813.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4486] gi|189365706|gb|EDU84122.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4501] gi|190901113|gb|EDV60888.1| transcriptional regulator, LysR family [Escherichia coli B7A] gi|208731081|gb|EDZ79770.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4045] gi|208738842|gb|EDZ86524.1| transcriptional regulator, LysR family [Escherichia coli O157:H7 str. EC4042] gi|209768078|gb|ACI82351.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209768080|gb|ACI82352.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209768082|gb|ACI82353.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209768084|gb|ACI82354.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209768086|gb|ACI82355.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|290762852|gb|ADD56813.1| putative transcriptional regulator LYSR-type [Escherichia coli O55:H7 str. CB9615] gi|291323001|gb|EFE62429.1| HTH-type transcriptional regulator yeaT [Escherichia coli B088] gi|320183822|gb|EFW58655.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme [Shigella flexneri CDC 796-83] gi|320647010|gb|EFX15843.1| LysR family transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320652292|gb|EFX20590.1| LysR family transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320657893|gb|EFX25655.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658466|gb|EFX26160.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320668364|gb|EFX35191.1| LysR family transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] gi|331049301|gb|EGI21373.1| putative transcriptional regulator LYSR-type [Escherichia coli M718] gi|331069533|gb|EGI40920.1| putative transcriptional regulator LYSR-type [Escherichia coli TA280] gi|331074135|gb|EGI45455.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|332101402|gb|EGJ04748.1| conserved hypothetical protein [Shigella sp. D9] Length = 314 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 15 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 75 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 194 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 239 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 240 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298 >gi|15966670|ref|NP_387023.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075942|emb|CAC47496.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021] Length = 310 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 15/269 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++R F VA GS + A +L + QS+++R + LE VG+ L R R + +T++GS+ Sbjct: 9 ERMRTFARVAERGSLSAVARELGVGQSTVTRHLRELEEAVGVPLLSRTTRRVMMTDEGSR 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E+ +E E++ + +G +R++ T G + + F L+P+I I Sbjct: 69 YYARSVEILRLVEQASDEVRGTRGAQAGTIRVSCTAAFGVLHVSRLIFAFQDLFPEIGID 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D AIRL P+ SS+ + L AAP YL P + QE Sbjct: 129 LSLSDERVDLVREGIDVAIRL-GPVSDSSMRMKALGQSRRLLVAAPAYLAERGRPATPQE 187 Query: 186 LDKHNLITFGDL-----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H I ++ + D + A P G L+V+ L++ + + G G Sbjct: 188 LIGHEGIRMSNVSGSETLALQRRDGKYHAV---PFG----GRLRVDHGLAVREALIAGRG 240 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV 269 I ++V D RI + + P +++ Sbjct: 241 IVPAHRWLVGDLLEAGRI--EAVLPGYSL 267 >gi|84684720|ref|ZP_01012620.1| transcriptional regulator, LysR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667055|gb|EAQ13525.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2654] Length = 298 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 11/274 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD LR+F VAR S + A L +++ R++S LE VG LF R +G LT Sbjct: 1 MDLDWDDLRIFLAVARGESLSAAGRVLKRDPATVGRRVSRLEEVVGAPLFARSPQGYGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G +L E + L ++ SG++RI LL + +P Sbjct: 61 DAGQRLLAHAEEAEQAVTRGAEALAGTTGGLSGQVRIGAPDGCANFLLPQVCAQIAAEHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++Q++ + I++S AD AI + P +Q K+ H+H AA YLK Sbjct: 121 EIELQIVALPRVINLSKREADLAIAVSPPATGRLTVQ-KITDYHLHLVAARLYLKEHGPV 179 Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++ +L+ ++ + IP + ++ ++L+ IG R++ L NS + G Sbjct: 180 ETLADLEGRPIVGY---IPDMIFDKELDYLSE----IGADRVT-LGSNSVSVQLGMLREG 231 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272 G+ + D+ + NL +++ D ++ + + Y Sbjct: 232 GGLGIAHDFALPFARNLRKVLTDEVSLTRSFYLV 265 >gi|317404172|gb|EFV84615.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 309 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 15/270 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + +++F + +G+ + AA + +++S +SR + LE G +L R R L LT + Sbjct: 7 LDLNLIQLFVTIVEAGTLSEAALRQGVTRSHVSRNLQKLERAFGAQLIRRTTRRLELTHE 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPD 121 GS L+ + + ++E+ + LQ+ +P+G +R++ LG+ ++L+ L F L +P Sbjct: 67 GSVLYDHGARMAREVESARHALQKLGAEPTGHVRLSLPTGLGELDMLRPLLVRFALEHPS 126 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++++ N+ D+ D A+R + + R+L I H AAP YL P Sbjct: 127 LSLRVLFSNRVSDLISSEIDVALRAIS-VPPQDYVARELGRIKWHLCAAPEYLARMGMPA 185 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVL 237 ++L + + + G P+ R G+P + LQ + + Q Sbjct: 186 HPRDLGRFDFL--GPPGPRPQATLRL-----RGKGQPHEVKLATRLQSEYFPFLAQAARE 238 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSF 267 G+G+ALLP YIV+ + R+++ + P++ Sbjct: 239 GAGVALLPAYIVRPDLEAGRLLQ--VLPAY 266 >gi|160901057|ref|YP_001566639.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366641|gb|ABX38254.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 335 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 13/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + GSF A L S +S++++ LET +G++L R R L LT++G + Sbjct: 10 DELAALVALHEQGSFAAAGRALLRHPSVLSKRLNALETRLGVRLVERSTRHLHLTDEGLR 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + Q E + + + G+LR++ +G+ L L EF L +P I ++ Sbjct: 70 LVDKVRQAAGLIADAQKEAAQGASQARGRLRLSLPAAMGRRWLSPLLAEFALAHPQIVLE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +DI + D A+R+ + + S L+ +L AAP YL+ P+ ++ Sbjct: 130 VEYADRFVDIVGERFDAAVRIGR-LADSRLVALRLGGHQRILGAAPAYLQAHGTPVHPED 188 Query: 186 LDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLG 238 L H + F L P+ E + + D P G+ R + L +S ++ V+G Sbjct: 189 LAAHRCLGFTGLQSFPQW-ELVHGGTSGDVPQGQARHTVLVRGPMVSNDSEALLTAAVMG 247 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRN 288 GI D+++ ++ LVR++ + + +YF P A ++ + A R+ Sbjct: 248 VGILAGGDWLMSEHMAAGRLVRVLPQWRLDGASGIYFVRPSAAFSSAAMTALRD 301 >gi|70731612|ref|YP_261353.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345911|gb|AAY93517.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 316 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 10/251 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V +GSF+ AA + L+ S+++R+I LE VG LF R + T G Sbjct: 8 EQLGLFLDVLEAGSFSAAARRHPLTPSAVARRIDSLENAVGTTLFMRTTHAVVATAAGQA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L+ + E S P G +RI G+ L + +FL+LYP + +Q Sbjct: 68 FAERARRIVAELQLARAEAVSLSHAPEGLIRIDAPAAFGRRHLAPAIADFLVLYPGLDVQ 127 Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L + +D+ + D +R + + + ++ L +I A A+P YLK+ P Sbjct: 128 LHLIDSFVDMQGSHLGKVDLVLRAGQRVD-TRMVATSLASIVRIACASPSYLKSRGTPSH 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240 EL +H+ + + L P F W +D + P+ L N+ +++ + G G Sbjct: 187 PAELSQHDGLDWDGLAPL----FAWRFELDGQVQSHRPQRIRLGANNAEALLSGALAGLG 242 Query: 241 IALLPDYIVKD 251 IA LP ++V + Sbjct: 243 IAHLPTWLVSE 253 >gi|330821761|ref|YP_004350623.1| transcriptional regulator [Burkholderia gladioli BSR3] gi|327373756|gb|AEA65111.1| transcriptional regulator [Burkholderia gladioli BSR3] Length = 303 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 19/299 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F V RSGSF AA L L+++ +S + LE+ +G+ L R R +LT G Sbjct: 10 DLRGMAIFATVVRSGSFAAAARSLGLTRAVVSHHVRVLESRLGVPLAQRSTRSFSLTPAG 69 Query: 64 S--KLH--RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 ++H R+ E + + ++ E P G++R+ + G + L F Y Sbjct: 70 QAFRVHCERLLDEAVDGIRSMELLRDE----PRGEVRLTCSHHFGTKRILPALVGFRRRY 125 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P +++ + + + ++DI + A+R P+ S+L R L+ AAP YL+ Sbjct: 126 PAVRLHVAMSDANVDIVQQGVELAVRA-GPLADSALHARPLLREATMLCAAPAYLRRHGA 184 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P S +L H + + P +A D + P + +S S + + + G Sbjct: 185 PASADDLVAHRWVVYP---PGQRATRVRVAGHD--VDVPVQGDVVTDSAASRLAFVLAGD 239 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIA LP Y + LVR++ +V T ++ + + + + +L R+F+ AR Sbjct: 240 GIARLPAYDAASLIASGELVRVLPEVQTAPLEIFLVHSKRIGPSARL--LRDFLLETAR 296 >gi|293604952|ref|ZP_06687349.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292816780|gb|EFF75864.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 301 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 21/274 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA++ SF+ AA L + +S++SRQ++ LE VG++L R R + LT+ G Sbjct: 1 MELFVEVAKTRSFSRAAATLGVPKSTLSRQVAELEKSVGLRLLSRTTRKVELTDAGRLYF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ELQ+ P+G LR+ D G + L + EF YPD+ L Sbjct: 61 ERCQRIVAEAQIAHEELQKLVDTPAGPLRVNMPADFGTDFLAESFMEFSRRYPDVTFFLD 120 Query: 128 LDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 L N D DIS++ D + S+ I R L + H YA+ YL E Sbjct: 121 LANPDHASRVFQTCDISIEIGD--------LPDSTQIARLLGMLPAHLYASHDYLDKHGE 172 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P +L +H I F W L+ D+ I + VN + +LG Sbjct: 173 PKHPSDLTRHECIEF--RAEGAGRVTRWPLSNGDQHIEFTPGNRFSVNGVAMARRLAMLG 230 Query: 239 SGIALL--PDYIVKDNPNLVRIMEDVITPSFTVY 270 +GIA+L + + L R++ D F VY Sbjct: 231 AGIAVLVGGQTAEQQSGQLRRVLPDWQLGPFPVY 264 >gi|254439800|ref|ZP_05053294.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198255246|gb|EDY79560.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 296 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 16/287 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW LR F A + S + AA +L L+Q ++SRQ++ LE + + LF R RGL LT+ Sbjct: 8 LDWTHLRSFLATAETASLSAAARKLGLTQPTLSRQVAALEDNLSLLLFERVGRGLQLTDA 67 Query: 63 GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G +L ++ H++ T Q S + +G +RI + L + E Sbjct: 68 GRELLAHVQDMGGAAHRVAMTAAA-QRSDI--NGTVRITASDIYSSTYLPKMIVEVRKRA 124 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + ++++ N D+ AD AIR +P Q L+ R + H YAA YL Sbjct: 125 PGLVVEVVATNDISDLMRREADIAIRHVRPEQ-PDLVARLVREATGHFYAAKIYLDRRGR 183 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P + EL H+ I++GD I + +E +L +D P+ +V S I+ + + + Sbjct: 184 PQTRTELGTHDWISYGD-IGQMVE---YLVALDIPL---TADAFKVGSQNGIVAWEMARA 236 Query: 240 GIALLP-DYIVKDN-PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 G+ + P D V D + RIM D + F V+ + + +++ Sbjct: 237 GLGICPMDDTVGDQVEEMERIMGDDLKVMFPVWLVTHREVHTSPRIR 283 >gi|163857040|ref|YP_001631338.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163260768|emb|CAP43070.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 129/292 (44%), Gaps = 21/292 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F V AR SFT AA++L ++Q ++S+Q+ LE+ +G++LF R +GL LTE G Sbjct: 11 LQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLESFLGVELFLRIRQGLVLTEAGQSYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E +EL + G L + G L L F+ + PDI ++ + Sbjct: 71 KKIQAGLGQIEAATVELIAHQGQ-GGTLHLTCMPTFGARWLIPRLATFMRVRPDIHVEFL 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKN-CREPLS 182 + D S D A+R I S ++ R +V + +P L + C+ S Sbjct: 130 PHRQGYDFSTPELDAAVRFGDGIWPGSGADYIVGRDIVPV-----CSPRLLGDGCQ---S 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL ++ L+ + + F R + + + Y + Q G GIA Sbjct: 182 ADELLRYPLLHHTSALEGWRDWFEQAGCDTRRA----LEGARFDQYSLLSQAAAAGFGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 L+P +++D + L + I Y CYPE N L+AFR ++ Sbjct: 238 LIPRCLIEDELRDGKLAVALRLPIRARQGYYLCYPEQKANLPILQAFRAWLM 289 >gi|114705739|ref|ZP_01438642.1| transcriptional regulator, LysR family protein [Fulvimarina pelagi HTCC2506] gi|114538585|gb|EAU41706.1| transcriptional regulator, LysR family protein [Fulvimarina pelagi HTCC2506] Length = 342 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/298 (23%), Positives = 135/298 (45%), Gaps = 15/298 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W+ +R+ +A +GS AA +L S++ R++ +E G LF R + LT T Sbjct: 33 TLTWEDIRLVGAIAETGSLPEAAARLGTHHSTVFRRLRQVEAGTGCPLFERTGQRLTPTA 92 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + ++ T +++ PSG+LR+ T L Q+LL +F PD Sbjct: 93 LGEEIAALADRIGSDVDRTAMKMAGREALPSGELRVTTADSLLQHLLTPIFADFQKACPD 152 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QI +++ N+ +++S AD AIR +L+ R+L + Y + P Sbjct: 153 VQIDIVVANQALNLSKRDADVAIRASDS-PPETLVGRRLARVAWALYG----RADTASPW 207 Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + + H+ + GD + + + T P +V++ L + G G Sbjct: 208 PGGDANADHDWVALGDGMAAMGVVRHAVETA-----APGRLRYRVDTVLGLASAIEAGIG 262 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296 I LP +I +P LVR+ + P+F ++ E L+ +++ F +F+ R+ Sbjct: 263 IGHLPCFIGDRSPVLVRL--EPPEPAFAADLWLLTHEDLRRAARVRVFLDFVAYAVRE 318 >gi|293395436|ref|ZP_06639720.1| glycine cleavage system transcriptional activator [Serratia odorifera DSM 4582] gi|291422120|gb|EFE95365.1| glycine cleavage system transcriptional activator [Serratia odorifera DSM 4582] Length = 301 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V R +FT AA +L ++QS++S Q+ LE G++LF R + L+LT G+ L Sbjct: 10 LRAFEVATRHTTFTSAAAELFITQSAVSHQLKKLEEIWGLQLFQR-GKNLSLTPAGAALA 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + KLETT +L+E K +LR+ TT L L E L+P+I + L Sbjct: 69 PLVREFFSKLETTLADLREQ--KGRVRLRVNTTYSFALKWLLPRLPELARLHPEILVTLE 126 Query: 128 LDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ I+ + AD AIR P + + R+ + A+P L+ P Sbjct: 127 STDQAINFASTDADVAIRFGHGNYPALHTEFMFRE----QLFPVASPALLQRFGTPREPA 182 Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL ++ L+T DL+PK F L ++ + + N ++ +LG GIA Sbjct: 183 ELLRYPLLTRDGADLVPKWDVWFK-LVGINTEVLHESVRFADTN---MTIEAALLGQGIA 238 Query: 243 LL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L ++ K+ LVR+ YF P+ ++ + FR+++ Sbjct: 239 LARSGHVEKELGEGTLVRLFAVPFPSPAAYYFVCPQGIETRPHIVKFRSWL 289 >gi|167623093|ref|YP_001673387.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167353115|gb|ABZ75728.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 313 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L R R L+LTE G Sbjct: 6 EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ E+ E + + G L++ + G + L EF+ +P++++Q Sbjct: 66 LYTQGEELLRDAEQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMAKHPELELQ 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L + +D+ + D + + + + ++ R L+ A+P Y++ EP ++ Sbjct: 126 VSLLDHKVDVVNEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPSYVEKHGEPSRPEQ 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + + + E W E +S +V++ ++ V G G+ L Sbjct: 185 LVDHNCLVYQG---EWHEHSIWQFKQGDDFCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241 Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+++D LV IM+D +T + YP K+ AF +FI Sbjct: 242 ASYLLEDELEKGTLVPIMQDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291 >gi|134278949|ref|ZP_01765662.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|134249368|gb|EBA49449.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] Length = 336 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +P+G LR+ + +GQ+ + L + +PD+ I+L Sbjct: 66 LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ L + A P YL+ P + ++L Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 +H +T L WL ++ P G I +Q N+ S+ G GI + Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y ++ NLV ++ VY YP R FI K R W Sbjct: 241 LPLYAAIEDLRCGNLVLVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286 >gi|292489724|ref|YP_003532614.1| putative RuBisCO transcriptional regulator [Erwinia amylovora CFBP1430] gi|292898068|ref|YP_003537437.1| LysR family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291197916|emb|CBJ45017.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291555161|emb|CBA23351.1| probable RuBisCO transcriptional regulator [Erwinia amylovora CFBP1430] Length = 302 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 4/198 (2%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M D+LR F SGSFT AA +LHL+ S++S+ I+ LE +G +LF R R L Sbjct: 1 MPVSEDRLRGITPFVASVESGSFTAAAGRLHLTCSAVSKSIARLEARLGSRLFERTTRSL 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 LT+ G + + V +L + L P G+LR+A G+ + L +F Sbjct: 61 VLTDAGQAFYDTCARVLGELAEAESVLAAQRSMPVGRLRVAVPHTFGRLHVMPLLNDFCR 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176 +P++Q+ L ++ +D+ + D A+R+ P SL R L + + AAP YL Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGIDVAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180 Query: 177 CREPLSIQELDKHNLITF 194 P S+ +L++H I + Sbjct: 181 HGIPQSLAQLEQHKAIVY 198 >gi|330860517|emb|CBX70820.1| putative HTH-type transcriptional regulator ltrA [Yersinia enterocolitica W22703] Length = 310 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 140/299 (46%), Gaps = 14/299 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++ +F V +GSF+ A QL +S S+ISR +S LE + +L R R L L+E G + Sbjct: 11 SEMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEE 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + + + S +P G +R++ +G+ ++ ++ EFL Y I +Q Sbjct: 71 VFKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDVQ 130 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 LILD++ +D + D IR+ +P ++ R+L+ I A P YL PL Sbjct: 131 LILDDRYVDFIDENVDLVIRITNQP--PPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPH 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIAL 243 +L +H+ I G+ F + R + L +++Q+ +GS Sbjct: 189 DLAQHSCIYLGETPGDARWKFRQGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGS---- 244 Query: 244 LPDYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 LP + + LV+++ + + + S ++ YP KL+ F ++I + RD Sbjct: 245 LPYFTARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 303 >gi|156977860|ref|YP_001448766.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116] gi|156529454|gb|ABU74539.1| hypothetical protein VIBHAR_06651 [Vibrio harveyi ATCC BAA-1116] Length = 309 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 65 FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIELYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ A+P Y+ + E ++ Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGANERILCASPEYVASNPELTKPED 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGSGIA- 242 L +HN + F ++ + + W T + + +S L +S LS + + G GIA Sbjct: 185 LHQHNCLCF--MVADSVYN-KWTLTREGETEQVVVSGKLLSNDSDLS-HRLAIKGKGIAN 240 Query: 243 -LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L D I +D LVR++ + S +Y + T ++ FR+FI Sbjct: 241 KSLMD-ISQDLIEGRLVRVLPEWDCGSVPLYMVCADRRLLTPTIRTFRDFI 290 >gi|189352738|ref|YP_001948365.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189336760|dbj|BAG45829.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 320 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 7/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + A G TLT Sbjct: 12 LNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLTA 71 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +L + +++ ++ + SG +RI +T G L L F +P Sbjct: 72 EGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHPR 131 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + L+ + ++ AD A+ L +P + + KL + YA YL + Sbjct: 132 VTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLASHPPIA 190 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H I++ D + E V R + + S+ ++ G G+ Sbjct: 191 GTDDLARHTFISYVDDLAFSSELLYLERAVPGATAGLRTTSVIAQSFAALH-----GGGL 245 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +I P LV ++ D + + + E L+ ++ A +++ Sbjct: 246 AILPCFIAAAQPALVPVLPDQVVVTRCFWLTCREDLRKLRRVTALWDYL 294 >gi|170721548|ref|YP_001749236.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169759551|gb|ACA72867.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 14/295 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F + A SFT AA + ++ +++SR ++ LE +G++LF R R + L+E G + Sbjct: 13 LELFCLAAERSSFTAAATEAGVTPAAVSRSVARLEERLGVRLFVRTTRLMRLSEAGQAYY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + ++ PSG+LRI+ L L F YP +Q+ + Sbjct: 73 LQCRQALGQLVEAERQVSGGQAMPSGRLRISAPTPYAHYRLLPLLPHFRQRYPQVQVDVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D + ++ D AIR R+P S L+ R+L + A P YL P ++L Sbjct: 133 VSNRNVDFAEEHFDLAIRGREPA-DSRLVVRRLENAELVVVATPAYLARMGTPHVPEDLA 191 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H I F G P ++ G +CL +L+ G G+ Sbjct: 192 GHECIQFELASTGRRPPWRFRREGRELELETQGG---FTCL--GDFLATATLVRHGGGLM 246 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 + V+ D+ LV ++ S YP+A +++ F +F+F + Sbjct: 247 QAYRFTVQDALDSGELVEVLTAYGGTSQPFMLIYPQARHMPLRVRLFIDFLFAEG 301 >gi|186472990|ref|YP_001860332.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195322|gb|ACC73286.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 289 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 118/272 (43%), Gaps = 11/272 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + DW +R+F +AR G+ AA QL +Q ++ R++ LE +G LF R G LT+ Sbjct: 5 NLDWSDVRIFLAIARCGTLGAAARQLRQTQPTMGRRLRALEEALGHTLFQRTTEGFVLTD 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G + + L S + +G LR++++ G ++L FL +P Sbjct: 65 EGRSVLSYAERMEEDAHAFMRSLAGSEQELTGNLRVSSSDWYGIHVLTPVFAAFLARHPR 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+LI D++ +++ AD R+ P ++QRKL+ I Y + R Sbjct: 125 TSIELITDSRRYNLARREADLVFRI-TPFDEPDVVQRKLMHIDYALYGRIDLVAPVRGDG 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + Q L + FG+L D W+ + + I+ N + + C G G Sbjct: 184 AGQSLITMD-SAFGEL-----PDVTWIRQM---LPNAHIAYASNNRGVQ-ARMCAQGGGF 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273 A+LP + + P L RI P V+ Y Sbjct: 234 AVLPCPLGDNTPGLRRIDLGDAPPGRDVWLGY 265 >gi|104783326|ref|YP_609824.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112313|emb|CAK17040.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 303 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 16/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF V GS + AA+ L LS+ +SR ++ LE VG +L R R L+LT G + Sbjct: 5 NAMRVFVTVVDLGSQSAAADHLELSRPVVSRYLAELEDWVGARLMQRTTRKLSLTAAGLE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ Q +++ P G+LRI+ + GQ L L ++ YP ++++ Sbjct: 65 TLPRCRQLLELAGDLQNAVRQPDDAPRGELRISVSTSFGQAQLVDALAAYVKRYPGVKVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ + D AIR + +LI R+L A+P YL+ P ++E Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDV-DPNLIARRLSVCRSVICASPAYLREHGTPQRVEE 183 Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L HN +T FG + W V+ + + P + N +++ + + +GI Sbjct: 184 LSGHNCLTHAYFGHSL--------WHFEVNGQSVTVPVQGNISANEAMTLQKAALASAGI 235 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP Y + LVR++ + + Y L++ +F+ Sbjct: 236 AMLPTYQAAPALRSGELVRLLPEARPRELNLNAVYTSRKHMPATLRSMLDFL 287 >gi|227818871|ref|YP_002822842.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|36959130|gb|AAQ87555.1| Transcriptional regulators, LysR family [Sinorhizobium fredii NGR234] gi|227337870|gb|ACP22089.1| putative LysR, transcriptional regulator [Sinorhizobium fredii NGR234] Length = 305 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 8/288 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W ++VF V SG F AA+ LH+S S++R I+ LE ++G +L R R L LT G Sbjct: 4 WQAMQVFVQVVESGGFAPAAKMLHMSPPSVTRAIAKLEEQIGTRLLVRTTRSLKLTAAGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + S + P+G L + G+ + + EFL YP +Q+ Sbjct: 64 GYVADCRRILAEIAEAEANAAGSFIHPAGLLTVTAPALFGRIHVLPVILEFLDRYPSMQV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ ++ + D A+R+ + +S LI R++ ++ A+P Y EP Q Sbjct: 124 KTVFVDRVTNLVEEGLDVAVRI-AALPASGLIARRVGSVRQVLCASPGYFARFGEPEIPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H +I L F ++ PI PR+ C N+ + V G G++ Sbjct: 183 DLIHHRIIGRDGLFGHSEWLFGRDNSIRVPI-SPRLIC---NTNDVAIAAAVAGWGLSRF 238 Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y V R ++ D ++ + E + +++AF +F Sbjct: 239 QSYQVAPEIEAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDF 286 >gi|269103637|ref|ZP_06156334.1| putative transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268163535|gb|EEZ42031.1| putative transcriptional regulator LysR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 305 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 130/304 (42%), Gaps = 35/304 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR +A+ GSF AA+ L + +++SR++ LE +G +L R +R + LT G Sbjct: 11 DDLRTLIAIAKHGSFRSAAQALDIPPTTLSRRLQRLEDTLGSQLVLRDSRNVALTPLGQN 70 Query: 66 LHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +LE +EL + S +P G LRI+ + L L EFL LYP++ + Sbjct: 71 YVERCEPLIKELEVATLELDDISHSEPRGALRISAPVGLLTYKLMPLFNEFLSLYPEVTL 130 Query: 125 QLI-LDNKDIDISMDYADCAIRLRKPIQSS------SLIQRKLVTIHMHAYAAPHYLKNC 177 L L N+ D S + D R+ SS QR LV A+P YL Sbjct: 131 SLNHLSNQHHDYSPEQYDVVFRVGHQPDSSFAAATIGQSQRILV-------ASPCYLAKN 183 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-------- 229 P +L +H + + +F W D P L VNS + Sbjct: 184 DTPQHPNDLYQHERLA-------TVPEFEWALRHDDIQQHP--DTLWVNSPVRLAIADLN 234 Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 S+ Q + G GIA LP+Y+V D L +M D +PS +Y Y + F Sbjct: 235 SVKQAAIAGLGIACLPNYVVADALQRGALKTLMTDWYSPSRPIYMLYQRLEYTPAHISCF 294 Query: 287 RNFI 290 +F+ Sbjct: 295 IDFM 298 >gi|262368677|ref|ZP_06062006.1| LysR substrate binding domain-containing protein [Acinetobacter johnsonii SH046] gi|262316355|gb|EEY97393.1| LysR substrate binding domain-containing protein [Acinetobacter johnsonii SH046] Length = 309 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 129/272 (47%), Gaps = 9/272 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V SF+ AA +L ++ S++S+QI LE E+ + L +R R L LTE Sbjct: 3 DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEQEMEVVLLHRSTRKLNLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G E+ E +I + E G+LRIATT +LG N + L ++ + + Sbjct: 63 GQAFFHSCQEMLAAAERGKIRINELRDDLVGELRIATTPELGANHVIPALSHWMSAHRGL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I + DN +D+ D A+R+ + S+ L + A+P YL N P+S Sbjct: 123 SIHIEADNHYVDLMNGRIDIALRMSPTVDDQSVHVVPLAHVEQILVASPSYL-NQSAPIS 181 Query: 183 -IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L H+LI + DF + T D E + S + N+ L C G G+ Sbjct: 182 RPEDLKNHDLIPITIMKNNHDFDFKNVVTGDAVKLEMK-SRVASNNILVTKTLCQHGHGV 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270 A + V+ N +LV ++ + P+FT+Y Sbjct: 241 ARILYLDVQKELVNGSLVEVLPEWKLPNFTLY 272 >gi|239994400|ref|ZP_04714924.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 296 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF A+SGSF AA+ + +S +++R I+ LE ++ +LF+R R + L+E G Sbjct: 1 MRVFAEAAKSGSFVGAADAMSMSAPAVTRCIAHLEAQLNTRLFHRTTRQVKLSEVGEHYL 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + +E ++ + + P G+L I I G+ + + +FL YPDI++ Sbjct: 61 IHVSRILADIEQSEAAVSGIDLVPRGELNITAPILFGERYVTPIISQFLKDYPDIRVNGH 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +++ D AIR+ P + SSL + + AAP YL + ++L Sbjct: 121 FHDDVVNLIDSNMDVAIRIGNP-KDSSLYGVTVGYVRRVTCAAPSYLASSPAIKKPEDLK 179 Query: 188 KHNLITFGDLIPKCM-EDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +H++ L PK E W + RPI Q N + + + G G+ L Sbjct: 180 RHSV-----LYPKRFNEPAVWTYHKNGRPIAIKLTPRFQSNQNRAAINAAIAGVGVVRLM 234 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V + + +LV ++EDV + E KN K+K F +++ Sbjct: 235 SYQVAEALRSGDLVSLLEDVEDKKLPIQVVSVEGRKNLTKVKMFIDYV 282 >gi|221212620|ref|ZP_03585597.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221167719|gb|EEE00189.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 320 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 7/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + A G TLT Sbjct: 12 LNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLTA 71 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +L + +++ ++ + SG +RI +T G L L F +P Sbjct: 72 EGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHPR 131 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + L+ + ++ AD A+ L +P + + KL + YA YL Sbjct: 132 VTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLATHPPIA 190 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H I++ D + E V R + + S+ ++ G G+ Sbjct: 191 GTDDLARHTFISYVDDLAFSSELLYLERAVPGATAGLRTTSVIAQSFAALH-----GGGL 245 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +I P LV ++ D I + + E L+ ++ A +++ Sbjct: 246 AILPCFIAAAQPALVPVLPDQIVVTRCFWLTCREDLRKLRRVTALWDYL 294 >gi|160896115|ref|YP_001561697.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361699|gb|ABX33312.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 324 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 17/283 (6%) Query: 6 DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F VA GS T AA+ ++ + + R++ LE +G+KL R R ++LT + Sbjct: 15 DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHE 74 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + VK +G LRI G+ + + F L+PD+ Sbjct: 75 GSAFLEDCQRLLSDVSNAEASVSAGGVKATGHLRITAPAGFGRRHVAPLVPLFRDLHPDV 134 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L ++ +D++ + DCA+R+ + S+L+ ++ A P YL+ P Sbjct: 135 TISLNLSDRVVDLAGEGFDCAVRVGD-LPDSALVSVRIADNRRQCVATPAYLERRGTPRH 193 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLS------IMQYC 235 EL +H+ +T L + W + P G + + L + +C Sbjct: 194 PSELTQHDCLT---LSSDASQTRGWAFRIPHPDSGTSEVVHFKPGGPLDCSDGQVLHDWC 250 Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 + G GIA + V+ + LV ++E P ++ +P+ Sbjct: 251 LGGWGIAWRSTWEVEAEITSGRLVAVLETFAAPPNGIFVVFPQ 293 >gi|73538510|ref|YP_298877.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gi|72121847|gb|AAZ64033.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] Length = 318 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 18/300 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + + + V G + AA ++ LS+S IS++IS LE E+G+ L R R + Sbjct: 1 MSLRTEDIEAYLHVVELGGISAAARRMGLSKSVISKRISDLERELGVSLLQRSTRSTRPS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + +L+ + +++ + G+LR+ + G L + F +P Sbjct: 61 ENGCYFYEQARAALRQLDHAAQTVSDAAGELRGELRVLAPMTFGTRWLSPLIAAFARAHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L LD+K +D+ + D AIR+ + + SSLI R+L +P Y P Sbjct: 121 RMNLILELDDKLVDVGYERYDVAIRITR-LGDSSLIARRLTVSRRVLCCSPEYAARAGLP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYC 235 I+++ +H + + + P + F A D R I PR N+ + Sbjct: 180 QGIEDIAQHACLAYSNSPPAHVWAF---AAGDEHGSVRSIA-PR-GVFTANNGEVLRDAA 234 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 + G G+A+LP +IV D+ + R++E + P ++ YP + + KL+ ++ Sbjct: 235 LAGQGLAVLPRFIVWDDLHAGRLVE--VLPHLPPVDDGIFAVYPRSGFGSVKLRTLVQYL 292 >gi|270263276|ref|ZP_06191546.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042964|gb|EFA16058.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 303 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 112/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRRIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + ++ +L + P+G LRI ++ + QN+L + L YP + + L Sbjct: 66 YQGCRRMLQEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR +Q SSL ++L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRT-GALQDSSLFSKRLGSMPMVICAAKSYLSQHGTPQK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233 P M +F+WL RP E RIS N ++++ Sbjct: 181 ------------PSDMVNFSWLEYSVRPDSEFELIAPEGITTRISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|221196789|ref|ZP_03569836.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221203458|ref|ZP_03576477.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221177392|gb|EEE09820.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221183343|gb|EEE15743.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 337 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 128/289 (44%), Gaps = 7/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + A G TLT Sbjct: 29 LNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLTA 88 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +L + +++ ++ + SG +RI +T G L L F +P Sbjct: 89 EGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHPR 148 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + L+ + ++ AD A+ L +P + + KL + YA YL Sbjct: 149 VTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVSTKLCDYQLRLYATRDYLATHPPIA 207 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H I++ D + E V R + + S+ ++ G G+ Sbjct: 208 GTDDLARHTFISYVDDLAFSSELLYLERAVPGATAGLRTTSVIAQSFAALH-----GGGL 262 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +I P LV ++ D + + + E L+ ++ A +++ Sbjct: 263 AILPCFIAAAQPALVPVLPDEVVVTRCFWLTCREDLRKLRRVTALWDYL 311 >gi|254523593|ref|ZP_05135648.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219721184|gb|EED39709.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 297 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 133/283 (46%), Gaps = 14/283 (4%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 +A GS T AAE L +S++ ++R ++ +E +G +L +R R ++LT G ++ Sbjct: 1 MAERGSLTAAAEVLDMSRAMVTRYLAEVEGWLGARLLHRTTRRVSLTGPGEAALARFRQM 60 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 E Q EL +P G LR+ ++ GQ+ L + F+ +P +I+L+L ++ + Sbjct: 61 LEIGEALQGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPAARIELLLVDRTV 120 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 ++ + D A+R+ + I SLI R+L T A P YL+ P + + L HN +T Sbjct: 121 NLVEERVDLAVRIARQID-PSLIARRLATCRSVLCATPSYLQAHGTPTAPEHLAAHNCLT 179 Query: 194 ---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 G + + D L+ +G + N +++ G+GIA+LP Y V Sbjct: 180 HHYVGKSLWQLHRDGRSLSVA---VG----GNISANEASLLLEAVRAGAGIAMLPTYQVA 232 Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ ++ + ++ Y + ++ F +++ Sbjct: 233 PLLRSGELIELLPEFGLDELGIHAVYASRRQQPAIMRRFLDYL 275 >gi|254467629|ref|ZP_05081038.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] gi|206684377|gb|EDZ44861.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] Length = 305 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 10/294 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ + LRVF V GS T L L+ + S++I LE +G++LF R R LT T Sbjct: 1 MSY-LESLRVFTRVVELGSITSGGRDLRLTPAVASKRIKELEKHLGVRLFNRTTRSLTPT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + +V +E + + + S P G +R+ + +G+ ++ + F+ YP Sbjct: 60 EAGQLFYTEAKKVLESIEDAEAVVSQFSAVPRGVIRVTAPLGVGRRIIAPLVPGFVEAYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I++ + ++ +DI D D A + P S+L RK+ AAP YL+ P Sbjct: 120 ATEIRMRMSDRKVDILADGLDVAFFIGTP-HDSTLKMRKIADCARVLCAAPQYLERHGTP 178 Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ L HN + P+ E + LAT + P + + + + G Sbjct: 179 QVPEDLLSGHNCLLL--RYPRSPEYYWTLATPEGPRKLDVSGKYDADDSDVLTGWALDGR 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNF 289 GI P + V + LV ++ D P TV+ C YP K++ F ++ Sbjct: 237 GIVNKPRFDVAAHLRSGALVEVLPDT-PPEPTVFGCLYPHRKLQDPKIRLFVDY 289 >gi|13471829|ref|NP_103396.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022573|dbj|BAB49182.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 297 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 134/283 (47%), Gaps = 20/283 (7%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHRVTSEVYHKL 77 SFT AA ++ + +SR++ LE +G++L +R R ++LTE G++ L RV + + Sbjct: 12 SFTRAAVRVGRDATILSRRLQSLEERLGVRLLHRTTRSVSLTEAGAEFLVRVRAILASVD 71 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + P G LR+A G+ + L +FL +PDI+I+ N+ D+ Sbjct: 72 EAEAAASAHADGSPRGLLRLALPGTFGRMWIGPLLPQFLAEFPDIRIEAEFSNRFADLVA 131 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 + D A+RL ++ S L+ RK+ T AAP YL P + Q L +H+ + F Sbjct: 132 ENFDVAVRL-GALEDSRLVARKVATRRRLLCAAPAYLARRGRPDTPQALLEHSCLGF--- 187 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGIALLPDYIVK- 250 + F DR E R + ++V+ L +++ V G G+ + D+++ Sbjct: 188 --SGFQTFPAWEMTDR---EGRRARVEVSGPLVSDDAEVLVEAAVQGLGLMMSTDWLIGR 242 Query: 251 --DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LV ++E+ + VY P A K +AF ++I Sbjct: 243 ELADGRLVPVLEEWTLADEGAVYVVLPSAKGQAAKTRAFADWI 285 >gi|167033025|ref|YP_001668256.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859513|gb|ABY97920.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 296 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 7/247 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF VA GS + AA L+L+ S++SR ++ E +G +L R R +TLT +G Sbjct: 9 EMEVFARVAHEGSLSAAARALNLTPSAVSRILARTEQRLGTRLLLRTTRAITLTPEGEAY 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R V + + + + V P G+LR++ + + + L F YP + + L Sbjct: 69 LRGARRVLADMLEVEEAITDQGV-PRGRLRVSAALGHARLTVVPLLAAFSARYPQVLVDL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ DI AD A+R + SSL R + A+P YL+ C PL ++L Sbjct: 128 TLSDEVADILGGQADVALRFGH-LPDSSLSARTIGETGQVVVASPDYLQRCGTPLEPEDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN + F + D W D R++ ++ +S ++ Q LG+GIA + Sbjct: 187 ARHNCLRFN--FRRAAPD--WPFRRDGQTFSLRVAGNIECSSGEALAQLARLGAGIARIG 242 Query: 246 DYIVKDN 252 + V D+ Sbjct: 243 TFTVVDD 249 >gi|182678802|ref|YP_001832948.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634685|gb|ACB95459.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 294 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/290 (21%), Positives = 131/290 (45%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF+ AA ++ Q ++S+ I+ LE +G++L R RGL TE G + Sbjct: 7 IETFVRVVDTGSFSAAARIQNIGQPTVSKAIAQLEDWLGVRLLLRSTRGLAPTEAGMSFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + ++ SG++R++ + + + L FL +P++++ L+ Sbjct: 67 ERARRAIEEADEAVLAARGTAAGLSGRVRVSAAVCFARLHIVPKLPAFLATHPNVEVDLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++++ID+ + D A+R+ P+ + RK+ A P Y + +P + +L Sbjct: 127 LEDRNIDLVAEGVDVALRM-GPLTDPGMTVRKIAERRRLVMATPEYFERYGKPETPSDLI 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H + + EDF + ++ G RIS + + + G G+ + Sbjct: 186 GHQAVIYTR--DNGGEDFTFTRNTEQTSIGLSGRVRISATE-----GLRAAVLAGIGLTI 238 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ +V ++D P+ ++ YP + K +AF +F+ Sbjct: 239 ASEFAFSPELKTGEVVTALDDWTLPAISLSAVYPTGRMASTKARAFVSFV 288 >gi|229847429|ref|ZP_04467529.1| putative LysR-family transcriptional regulator [Haemophilus influenzae 7P49H1] gi|229809667|gb|EEP45393.1| putative LysR-family transcriptional regulator [Haemophilus influenzae 7P49H1] Length = 295 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 138/303 (45%), Gaps = 17/303 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L VF V +GSF+ AA+QL ++ S++SR + LE ++G+ L R R L LT Sbjct: 1 MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ + + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ+ L+ I++ D A+R + + S L R L H A+P YL P Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S + L H + F + P + + L P +IS S I++ C+ G Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWEVLDAQGNPY---KISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 GIA L D++V ++ P + D P VY Y + N +L+ F +F+ Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLFSNHITDETLPFNAVY--YSDKAVNL-RLRVFLDFLAE 291 Query: 293 KAR 295 K R Sbjct: 292 KLR 294 >gi|148652987|ref|YP_001280080.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572071|gb|ABQ94130.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1] Length = 299 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 15/265 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F + +GS + AAE L ++ S++SR ++ LE ++ LF R R L LT Sbjct: 1 MKVTLNELDTFISIVDTGSISQAAEYLDVTVSAVSRSLARLEKKLDTALFRRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G V + LE + L ++ PSGKLRI +++ + ++ YP Sbjct: 61 QEGEMYLARIRGVLNDLEAAEDMLIKNKAVPSGKLRIDAATPFMLHVIAPLMTKYSQAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I I+L+ + +D+ + D AIR+ + ++ S+L L + A+P YL+ P Sbjct: 121 QIDIELVSNENLVDLLEERTDVAIRIGE-LKDSTLNATPLGLSQIRILASPAYLQRQGTP 179 Query: 181 LSIQELDKHNLITFGDLIPK-----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 S+++L H L+ F L PK + FN L + ++ +S ++ Q Sbjct: 180 QSVEDLAHHQLLGFNAL-PKLNDWPIYDAFNNLFHAQ--------TNIKADSGETLRQLA 230 Query: 236 VLGSGIALLPDYIVKDNPNLVRIME 260 + G+GI L D++ + + R++E Sbjct: 231 LCGTGIVCLSDFMTQQDIKEGRLIE 255 >gi|330828926|ref|YP_004391878.1| LysR family transcriptional regulator [Aeromonas veronii B565] gi|328804062|gb|AEB49261.1| Transcriptional regulator, LysR family [Aeromonas veronii B565] Length = 300 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 137/296 (46%), Gaps = 12/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SFT AA QL +S + S+ + LE + +L R R + TE G + Sbjct: 7 MRTFIKVVECQSFTKAANQLGISVAMASKLMQQLEESLATRLLSRTTRQVNPTEAGQFYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + +LE T +L + +P+G L+++ +D G L L F +PD+++ + Sbjct: 67 QRSLALLAELEETHSQLTHHNQQPNGTLKLSVPMDFGYLHLSPALPLFRQRFPDLKLDIE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + + D A+R+ + SSL+ R+L TI + A+P YL P ++L Sbjct: 127 YSDRRVALVEEGFDLALRIGH-LSDSSLVARQLATIRVELCASPAYLARKGRPGKPEDLK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H+ + + P+ RP G L+ N+ +++ + GI L P + Sbjct: 186 QHDCLIYTLTQPEWHFKRGSEQQSIRPQGP-----LRANNGVALTRAACDDQGIILQPTF 240 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 IV + + LV ++ + +Y YP + K++ F F+ +L + W Sbjct: 241 IVGEALRSGQLVSLLPEWDKGDVGLYAVYPHRRFVSAKVRCFIEFVQERYLAPQQW 296 >gi|307300295|ref|ZP_07580075.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307319578|ref|ZP_07599004.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306894700|gb|EFN25460.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306904461|gb|EFN35045.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 310 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 5/264 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++R F VA GS + A +L + QS+++R + LE VG+ L R R + +T++GS+ Sbjct: 9 ERMRTFARVAERGSLSAVARELGVGQSTVTRHLRELEEAVGVPLLSRTTRRVMMTDEGSR 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E+ +E E++ + +G +R++ T G + + F L+P+I I Sbjct: 69 YYARSVEILRLVEQASDEVRGTRGAQAGTIRVSCTAAFGVLHVSRLIFAFQDLFPEIGID 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D AIRL P+ SS+ + L AAP YL P + QE Sbjct: 129 LSLSDERVDLVREGIDVAIRL-GPVSDSSMRMKALGQSRRLLVAAPAYLAERGRPATPQE 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H I ++ E + P L+V+ L++ + + G GI Sbjct: 188 LIGHEGIRMSNV--SGSETLALQGRDGKYHAVPFGGRLRVDHGLAVREALIAGRGIVPAH 245 Query: 246 DYIVKDNPNLVRIMEDVITPSFTV 269 ++V D RI + + P +++ Sbjct: 246 RWLVGDLLEAGRI--EAVLPGYSL 267 >gi|260223119|emb|CBA33365.1| hypothetical protein Csp_B18680 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 341 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 18/298 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR VAR +F AAE+L L+QS++SRQI LE EVG+ LF RH R + LT G +L Sbjct: 31 LRALEAVARHLNFRAAAEELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTGAGGQLL 90 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++++ +++ ++ + S + I+T L L+ F YPDI I++ Sbjct: 91 RAAVPSLERIDSAVRQIRRTAGRKS--VAISTWASFASMWLIPRLEAFQAEYPDIDIRID 148 Query: 128 LDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D+ D AIR +P + S ++ +L + A+P LK+ + Sbjct: 149 ATDNPVDLDTSDVDLAIRYTQPGGVNSDAV---RLFGEQLTPVASPWLLKSGAPLRKAAD 205 Query: 186 LDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L + L+ D + + WL +P EP+ + N I Q + G GI Sbjct: 206 LARFALLEASDTHRVQNLEWLTWRRWLELNQQPRLEPK-RWMYFNYAHQIAQAALTGQGI 264 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGK--LKAFRNFIFLKA 294 AL +V D + +LV ++ + VY+ A +N+ + ++AF +++ +A Sbjct: 265 ALARMPLVADSLASGDLVEVLPGGRIDTPMVYWLLVGA-RNSSRPEIQAFCDWLLAQA 321 >gi|261822864|ref|YP_003260970.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261606877|gb|ACX89363.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 305 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 12/291 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS AAE L +S++ ++R ++ +ET G +L +R R L+LT+ G K Sbjct: 9 VFVTIIDRGSMIAAAETLDMSRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLVR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 E+ ++E + SG LR++ + L Q + + FL +P + I L ++ Sbjct: 69 CREMLALTADMRVEADTGNAMLSGLLRLSCSQSLAQGAIGMAITTFLRHHPRVAIDLQMN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +++ + D A+R+ + +LI R L + A+P YL P + +L H Sbjct: 129 NRSVNLVEERIDLALRITNELD-PNLIARPLASCESVLCASPSYLNEHGIPRQLTDLSVH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N +T+ K + F+ D P L N L ++ + G+GIAL P Y V Sbjct: 188 NCLTY-TYFGKSLWHFS---RDDEKFTIPVSGNLSGNESLVLLSGALEGAGIALQPRYSV 243 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + LV ++ + + +Y Y + L+ +F+ DW Sbjct: 244 TPYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFLV----DW 290 >gi|300691422|ref|YP_003752417.1| transcription regulator protein, HTH-type [Ralstonia solanacearum PSI07] gi|299078482|emb|CBJ51135.1| putative transcription regulator protein, HTH-type [Ralstonia solanacearum PSI07] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 12/250 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS + +++F VA SFT AAE L + + + S + LET +G +L +R R + LT Sbjct: 1 MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + ++ +E Q ++S G+LR+ + + + ++ L FL +P Sbjct: 61 QDGRAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I+L ++ +D+ + DC +R+ + SSLI R L + A+P YL P Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGT-LGDSSLIARPLGQLPQMNCASPAYLARYGMP 179 Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235 S+ +LD H ++ T G P W VD R P + V++ S C Sbjct: 180 RSLDDLDHHRIVHYVQTLGTKAP------GWEYRVDGRTAYRPMQGVVTVSTAESYEAAC 233 Query: 236 VLGSGIALLP 245 G G+ P Sbjct: 234 QAGLGMIQAP 243 >gi|300716890|ref|YP_003741693.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299062726|emb|CAX59846.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 10/244 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A S SFT AAEQL +S+S+I + I LE +G LF+R R ++LT +G Sbjct: 16 FVTAANSNSFTEAAEQLGVSKSAIGKSIQRLEHNLGTALFHRTTRKISLTTEGEAYLASC 75 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 L+ ++ L+ +P+G +RI G++++ L + YP +++ +I ++ Sbjct: 76 QSALETLQMAEMALRSKLTEPTGTVRIDLPAAFGRSVMMPILMDMTKRYPHLKLTIIFND 135 Query: 131 KDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID +D D AIR ++ LI RKL + A+P YL +P ++ +L+ H Sbjct: 136 RIID-PLDIGFDLAIRFGAVKDTTDLIARKLNDQQLIICASPDYLSAYGKPETLDDLNHH 194 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---QVNSYLSIMQYCVLGSGIALLPD 246 + L + +WL D + RI Q++ +++ C+ G+G+ P Sbjct: 195 RCV----LAWRGGAPLSWLIR-DSEGKDVRIKPTPFHQISDGDAMIDACIAGAGLIQFPQ 249 Query: 247 YIVK 250 +++ Sbjct: 250 ALLR 253 >gi|293604233|ref|ZP_06686641.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292817458|gb|EFF76531.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 301 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 11/243 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GS + AA L +S++ +SR ++ +E VG++L +R R L+LT G++ Sbjct: 7 MQVFVEVADRGSLSAAAVHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTPAGAETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + + P G LRI T++ G L + +++ +P + L+ Sbjct: 67 PRCRQMLDMVGDLRSAVSTPEDTPRGLLRITTSMSFGARHLASAVTDYVKQHPGTSVDLM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ + D A+R+ + +LI RKL A+P YL P +++L Sbjct: 127 LVERAVNLVEERVDLAVRITNDLD-PNLIARKLAVCRSVVCASPEYLSREGVPARVEDLS 185 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 N +T FG + + D +P+ P + N ++Q + G+GIA+L Sbjct: 186 LRNCLTHSYFGKSLWRFERD-------GQPVDVPVSGNISANEVSMLLQAALEGAGIAML 238 Query: 245 PDY 247 P Y Sbjct: 239 PTY 241 >gi|161524251|ref|YP_001579263.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350992|ref|YP_001946620.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198508|ref|ZP_03571554.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221208542|ref|ZP_03581543.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|160341680|gb|ABX14766.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189335014|dbj|BAG44084.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221171533|gb|EEE03979.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221182440|gb|EEE14841.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 324 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEGALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L ++L + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPEDLAHFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|116251610|ref|YP_767448.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115256258|emb|CAK07339.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 297 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 15/276 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR +FT AA +L +SQS++S + LET +GI+L R R ++LT+ G + Sbjct: 7 NDLMAFLAVAREKNFTRAAAKLGVSQSALSHTVRQLETRLGIRLLTRTTRAVSLTDAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + +++ L E +P+G +RI + ++ L+ FL PDI+++ Sbjct: 67 LFQGVGPHFDEIDAQLDALTELRDRPAGNIRITASDHAINWIIWPKLQRFLPNKPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LI +N DI + D +R+ + + + R AP Y + P Q+ Sbjct: 127 LIRENGLSDIVTERFDGGVRMGEQVAKDMISTRIGPDFPFAVVGAPSYFEGKGVPEHPQD 186 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN I T+G ED N R G+ + NSY S+ + + G G Sbjct: 187 LVRHNCINERLPTYGGFWAWEFED-NGKEIRIRVEGQLAFN----NSYQSV-EAALDGLG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 +A +P+ + + L R++E +P + Y Y Sbjct: 241 LAYVPEDVALPHIAEGRLRRVLE-AFSPYWDGYHLY 275 >gi|91783822|ref|YP_559028.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687776|gb|ABE30976.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 294 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS T AAE+ +S + + + I LET + +L R R +LTE G + + Sbjct: 7 MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLVTRLLTRTTRRQSLTEIGRQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + + P G L++ + G + + E+L +PDI ++L Sbjct: 67 EQCRRILADVKDAESLAEAMAAAPRGVLKVTAPLTYGVEVFAPAMTEYLTAWPDITLELD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ ID+ + D ++R+ + + SS + R L M A A+P YL P + ++L Sbjct: 127 LSNRVIDLVEEGFDASVRIGQ-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + F + E L R + N+ ++ + G G+ L P+ Sbjct: 186 QHECLGF---LHWGREGLWRLGGETADENHLRAGRFRANNGQALKVAALHGFGLVLQPEA 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + LV ++ED + V+ YP + T KL +F +F+ Sbjct: 243 LLAREIASGELVSVLEDYLPEGAPVHLLYPRDRRATPKLTSFIDFV 288 >gi|300704477|ref|YP_003746080.1| transcriptional regulator (lysr family) [Ralstonia solanacearum CFBP2957] gi|299072141|emb|CBJ43473.1| transcriptional regulator (LysR family) [Ralstonia solanacearum CFBP2957] Length = 297 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 138/284 (48%), Gaps = 24/284 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V +GS T AAEQL + S +SR + LE ++ L R R L LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + ++ + + +P+G+LR+ + +++ + +F YP Sbjct: 61 DEGAAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++L ++ ID+ + D AIR+ ++ S+L R+L T + A+P YLK P Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GTLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------ISCLQVNSYLSIMQY 234 ++ +L H L+ F + P+ + +W P+ P + L+ +S ++ Q Sbjct: 180 RTVDDLRHHALLGF--VQPESLN--HW------PLRGPHGDRLRIVPTLKASSGETLRQL 229 Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMED----VITPSFTVYF 271 + G+G+ L D++ + +LV+++ D ++ P VY+ Sbjct: 230 ALQGAGLVCLADFMTAADRRAGDLVQVLPDATVEILQPIHAVYY 273 >gi|288958403|ref|YP_003448744.1| transcriptional regulator [Azospirillum sp. B510] gi|288910711|dbj|BAI72200.1| transcriptional regulator [Azospirillum sp. B510] Length = 295 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 131/297 (44%), Gaps = 21/297 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR SFT AA++LH++Q++IS QI LE +G+ LF R R L LTE G Sbjct: 9 NALRAFEAAARHLSFTKAADELHVTQAAISHQIKALEEWLGLPLFRRMNRALALTEAGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E L L + SG L I+T L L F +P++ ++ Sbjct: 69 YLPPVREAMDTLSQATDRLIRAD--SSGTLTISTMPSFASKWLVPRLMRFQKRHPEMDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D + D AIR + ++R L+T + P L R ++ ++ Sbjct: 127 VHSTSQMVDFARHDVDLAIRFGSGLWPDLRVER-LLTEDIFPVGHPSLLSGNRPLVNPED 185 Query: 186 LDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 L H L+ +D+N W A R G + L+ + +Q + G G Sbjct: 186 LRHHTLL---------HDDYNISW-AVWCRAAGIEGVDTERGLRFDDSSFTLQAAINGHG 235 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 IAL +V D+ LVR+ E + S Y P + K+KAF +++F +A Sbjct: 236 IALARGVLVADDIAAGRLVRLFEVRLPGSLAYYVVAPHHYYSRPKVKAFHDWLFEEA 292 >gi|226939579|ref|YP_002794652.1| transcriptional regulator, LysR family [Laribacter hongkongensis HLHK9] gi|226714505|gb|ACO73643.1| Probable transcriptional regulator, LysR family [Laribacter hongkongensis HLHK9] Length = 298 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 127/276 (46%), Gaps = 10/276 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ +L+ F V + GS + AA Q + + I R++ LE +G++L R R LTLT++G Sbjct: 3 DFRQLQTFVEVVKQGSLSAAARQEGVVPAVIGRRLDALEERLGVRLLVRTTRRLTLTQEG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + +L + + P G LR+ G+ + ++ F PDI+ Sbjct: 63 AAFFEDCQRLLTELAEAEAAVASGVQGPKGHLRVTAPAGFGRRHVAPHVASFQRANPDIR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L L ++ +D+ + D AIR+ + SSL+ +L AAP YL PL+ Sbjct: 123 VTLDLSDRLVDLLAERVDVAIRISD-LADSSLVAVRLAENRRVVVAAPAYLARHGVPLTP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242 ++L + + +T G P+ W V + ++S L N + + + G G+A Sbjct: 182 EDLSRFDCLTLGASQPR-----GWSFVVAGKLVNWKVSGLLACNDGAVLHDWALKGLGLA 236 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + VKD+ LV +++ +P + V P+ Sbjct: 237 WRSLWEVKDDLTEGRLVTVLDAFSSPDYPVCAVVPQ 272 >gi|188580492|ref|YP_001923937.1| LysR family transcriptional regulator [Methylobacterium populi BJ001] gi|179343990|gb|ACB79402.1| transcriptional regulator, LysR family [Methylobacterium populi BJ001] Length = 304 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 88/174 (50%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L +F V+AR+G F AA +L +S S++S + GLET +G++LF R R +TLTE G Sbjct: 8 DLGDLNLFRVIARAGGFRRAALELDVSPSALSHALRGLETRIGVRLFNRTNRAVTLTEAG 67 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + ++E L KP+G+LR+ D + +L L FL YPD++ Sbjct: 68 ADLLTRLEAGFGEIEEGLEALNRYRGKPAGRLRLNVLTDAARLVLGPALSGFLAAYPDVR 127 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +++++ + +DI D IR + + I A+P YL+ Sbjct: 128 LEVVVQDDFVDIVGQGFDAGIRFGGRVPEEMIAVPIGGDIRWIMVASPGYLEKA 181 >gi|241662694|ref|YP_002981054.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240864721|gb|ACS62382.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 298 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 21/304 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V +GS T AAEQL + S +SR + LE ++ L R R L+LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + ++ + ++ +P+G+LR+ + +++ + +F YP Sbjct: 61 DEGATFLAQARRILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L ++ ID+ + D AIR+ ++ S+L R L T + A+P YLK P Sbjct: 121 QIDLELNTNDLIIDLLEEDTDVAIRI-GTLRDSTLRARLLGTRRLRVLASPAYLKAHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +L H L+ F + P+ + + DR EP L+ +S ++ Q + G+ Sbjct: 180 RNVDDLQTHALLGF--VQPESLNLWPLRGPHGDRLRIEP---TLKASSGETLRQLALQGT 234 Query: 240 GIALLPDYI-VKDNPN--LVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291 GI L D++ V+D + LV+++ D V+ P VY+ +NT F+ F Sbjct: 235 GIVCLADFMTVEDRRSGALVQVLPDATVEVLQPIHAVYY------RNTQLASRIACFLDF 288 Query: 292 LKAR 295 L+AR Sbjct: 289 LEAR 292 >gi|116251190|ref|YP_767028.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255838|emb|CAK06919.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 308 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 9/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + V V GS + A+ L +++SR++S LE + +L R R +TLTE G Sbjct: 5 DAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKITLTEAGRS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ ++E + P G+L + I G+ + + +FL YPDI ++ Sbjct: 65 YVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPDINLR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ ++ D+ D A+R+ + S+LI +L I YA+P YL P + Sbjct: 125 LMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLTRHTLPPHPGD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+ +TF + +W T + + P S L VN+ + + V G GI + Sbjct: 184 LAGHDCVTFEGM----ASMLSWTFTEGKHDLAVPIRSRLAVNTAEAAVDAAVAGLGITRV 239 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y LV +++D P V+ YP KL+A +F + R Sbjct: 240 LSYQAARAEMAGLLVPLLQDFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 293 >gi|145639041|ref|ZP_01794649.1| DNA topoisomerase I [Haemophilus influenzae PittII] gi|145272013|gb|EDK11922.1| DNA topoisomerase I [Haemophilus influenzae PittII] gi|309750999|gb|ADO80983.1| Putative LysR-family transcriptional regulator [Haemophilus influenzae R2866] Length = 305 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K I++ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKINLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +I+ + L+ ++ + ++ YP K++AF F+ Sbjct: 240 PKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|295676667|ref|YP_003605191.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295436510|gb|ADG15680.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 309 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 135/307 (43%), Gaps = 25/307 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F VA GSF AA QL++S S ++R +S LE +GI+LF R R + LTE G+ Sbjct: 5 FQAMQAFVKVADVGSFAQAAAQLNVSTSVVTRHVSSLEQHLGIRLFQRTTRKVVLTEAGA 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE + +S + +G LRI L E+ +P + + Sbjct: 65 QYADGCRVLLAELEEVESRATTASREVAGDLRIVALGSFSLFRLTPLFAEYQARFPQVNL 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L K +D+ D I I+S SL+ R+L+ H AA YL P + Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLINSHAVPVAAAAYLAQAGHPRTPA 184 Query: 185 ELDKHNLIT--FGDLIP-----KCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYC 235 +LD+H LI F P K D + + GE + VNS + Q Sbjct: 185 DLDRHRLIAAPFDTTGPMWIFRKGDGDADSASGGGDDSGESIAIDASFTVNSMIMQKQAA 244 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + GIALLP +V+D LVR+++ V+ V YP R F+ Sbjct: 245 LGAMGIALLPLEMVEDELRAGTLVRVLDRYAVLNGDVAVSLVYPS-----------REFV 293 Query: 291 FLKARDW 297 K R++ Sbjct: 294 PRKVREF 300 >gi|319776354|ref|YP_004138842.1| putative HTH-type transcriptional regulator [Haemophilus influenzae F3047] gi|317450945|emb|CBY87172.1| putative HTH-type transcriptional regulator [Haemophilus influenzae F3047] Length = 306 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 9/273 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIDY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNPVNWVGSRINQTQRFKIQSKVVSNSAFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P +I+ + L+ I+ + ++ YP Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYP 272 >gi|172063541|ref|YP_001811192.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996058|gb|ACB66976.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 301 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 29/303 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D L +F VA SFT AAE L + + +S I LE +VG+ L +R R + LTE G Sbjct: 3 NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ +++ Q + + G+LR+ +L ++++ L + + +P+++ Sbjct: 63 RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +D+ + DC IRL PI +LI R L + M A+P YL P ++ Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPITDDTLIARPLGKLRMTNAASPSYLARHGIPHTL 181 Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIM 232 +L H +T G P W + P G+ P S +QVNS + Sbjct: 182 DDLRSQGHRMVHYTLTLGARHP------GW----EYPNGDGYASLPLPSAMQVNSVQTYH 231 Query: 233 QYCVLG-----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + G +G + L +I ++ LV ++ D+ + +++AF Sbjct: 232 AAGLAGIGLIQAGYSALAHHI--ESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFM 289 Query: 288 NFI 290 ++I Sbjct: 290 DWI 292 >gi|325518369|gb|EGC98091.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 324 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLNQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPDDLAHFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AALDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|74311889|ref|YP_310308.1| putative LysR type transcriptional regulator [Shigella sonnei Ss046] gi|73855366|gb|AAZ88073.1| putative transcriptional regulator LYSR-type [Shigella sonnei Ss046] Length = 314 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 15 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 75 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 194 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 239 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 240 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITIEFL 298 >gi|262039924|ref|ZP_06013196.1| LysR family transcriptional regulator protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042755|gb|EEW43754.1| LysR family transcriptional regulator protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 308 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 14/300 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR G+ + AA +L ++ S+S + LE +G LF R R + LTE G Sbjct: 6 YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T+ LE + +++ + +PSG +RI + +L+ + F YP IQ+ Sbjct: 66 QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + + ++I + D IR ++ + + + YA+ YL P Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAMPA 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H LI + ++P + D TV+ P L N + G Sbjct: 186 DLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI L + I++ P+ + +MED +Y YP+ T ++KA +F+ + A D Sbjct: 240 GIGRLFEPILQLQPDREQFIPVMEDYWKTYPPIYLYYPKNAGRTKRVKALIDFLIMHAAD 299 >gi|170720051|ref|YP_001747739.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169758054|gb|ACA71370.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 315 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 14/292 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA+ GSFT AA QL + +++SR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ + +GQ+ + + + +PD+ L Sbjct: 66 LMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPLSIQE 185 + N+ D+ + D +I L + S + ++L + A+P Y+ +N + Sbjct: 126 TMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPEYVARNGFAHKPVDL 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241 L L +IP +E WL D P G+ + S QVNS ++ G G+ Sbjct: 186 LQHACLRMVSPVIP--LE--KWL--FDGPEGQELVNITSSPFQVNSADAMKTAIRSGMGM 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y D + +LVR+M D +Y YP K+K + ++ Sbjct: 240 GVLPIYSAIDGLRDGSLVRVMPDYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291 >gi|161523096|ref|YP_001586025.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348079|ref|YP_001941275.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221212138|ref|ZP_03585116.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|160346649|gb|ABX19733.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189338217|dbj|BAG47285.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221168223|gb|EEE00692.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 309 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 9/272 (3%) Query: 23 AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 AA QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ Sbjct: 22 AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 +++E P+G+LRI + L EF YP IQ+ +I++++ +D + D Sbjct: 82 QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDVIVNDRVVDPVEEGFDI 141 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202 A ++ PI S SLI+R+L + A+P YL+ P +EL +H + + Sbjct: 142 AFQIFPPI-SDSLIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRN- 199 Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258 W T + E + ++ NS + +Y + G G+ LP + D LV I Sbjct: 200 ---RWTLTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPI 256 Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + YP + K+KA F+ Sbjct: 257 LTDFQIAPLSFAAVYPATQRQALKVKALVEFL 288 >gi|329847285|ref|ZP_08262313.1| uncharacterized HTH-type transcriptional regulator yhjC [Asticcacaulis biprosthecum C19] gi|328842348|gb|EGF91917.1| uncharacterized HTH-type transcriptional regulator yhjC [Asticcacaulis biprosthecum C19] Length = 301 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 131/290 (45%), Gaps = 17/290 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA SFT AA L + +S++S I+ LE+ + +L YR R + LT G L+ Sbjct: 9 VFVRVAELSSFTQAAVSLGVPKSAVSSAIAALESRLKTQLLYRTTRKVQLTHDGHLLYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ E + Q S +G LR+ + + +N + L EFL + +Q++L Sbjct: 69 ARDLLSDAEDIEAMFQSSPAALTGTLRVDMPVAMARNFIVPRLPEFLGRHAGLQLELSCT 128 Query: 130 NKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + DC IR+ +P S L+ R+L + M A+P YL+ P ++ +LD+ Sbjct: 129 DRRVDVVAEGFDCVIRVGAQP--DSGLMARQLGEMVMANVASPAYLERHGTPQTLDDLDR 186 Query: 189 HNLITFGDLI---PKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 H ++ + + P E D + T D P + VNS S + G GI Sbjct: 187 HFMVHYVSQLGARPWGFEYRDGDSYRTRDVP------GRMFVNSTESFQSAALAGFGIIQ 240 Query: 244 LPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P V LV I+ V YP +++AF +++ Sbjct: 241 APVAGLAPVLGEGRLVEILPQYEAEPLPVALVYPRRRHQARRVRAFMDWV 290 >gi|290475341|ref|YP_003468229.1| transcriptional regulator [Xenorhabdus bovienii SS-2004] gi|289174662|emb|CBJ81456.1| Transcriptional regulator [Xenorhabdus bovienii SS-2004] Length = 316 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 10/245 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F + A+ GSFT AAE+L L++S++ + ++ LE +G+KLF R R L+LT +G + Sbjct: 12 AFVMTAQLGSFTAAAERLGLTKSAVGKSLNRLEERLGLKLFQRSTRSLSLTPEGDIFLQS 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + + P G+LRI G+ + L YP++ + + Sbjct: 72 CQNAIAILEQAEAGIASHITSPIGRLRIDLPAAFGRQRILPILLNITKEYPELTLSVSFS 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ D D IR+ + SS LI R+L T + A P YL+ P S EL++H Sbjct: 132 ERFVDVIEDGIDLVIRIGELADSSGLIARRLTTQKLVICATPDYLQRRGIPTSSDELNQH 191 Query: 190 NLITFGDLIPKCMEDFNWLATV----DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + I + + F+W + ++ I P ++ +++ + G G+A LP Sbjct: 192 HCIVGF----RRHQPFHWCLRITNSNNKNITPP--PTYELADGDAMLTAVLAGCGLAQLP 245 Query: 246 DYIVK 250 ++V Sbjct: 246 LWMVN 250 >gi|323527294|ref|YP_004229447.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384296|gb|ADX56387.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 324 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 29/250 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A+ GS + A ++ L+ ++ S +++ LE + +LF R R L LT++G Sbjct: 7 IRLFVEAAQHGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + LQ GK+R++ T D G+NLL L EF LYPD+ L Sbjct: 67 NCCRQALQSLDDAKAVLQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPDVTFALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AIR P Q SSL+ RKL A+P Y+ EP D Sbjct: 127 LSDSLSNLVQEDIDLAIRFGVP-QDSSLVVRKLARNRRVLCASPEYIARKGEP-----KD 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--------------PRISCLQVNSYLSIMQ 233 H+L F ++ L+T P+ E P S + N + Sbjct: 181 PHDLANFDCIV---------LSTGSGPVNEWRFTRGDEVQHYTVPLDSARETNDGAVARE 231 Query: 234 YCVLGSGIAL 243 + + G GIA+ Sbjct: 232 WALRGYGIAI 241 >gi|238793677|ref|ZP_04637299.1| Transcriptional regulatory protein [Yersinia intermedia ATCC 29909] gi|238726918|gb|EEQ18450.1| Transcriptional regulatory protein [Yersinia intermedia ATCC 29909] Length = 297 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 10/289 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VAR SFT AA +L +SQS++S I GLE + ++L R R + T G Sbjct: 5 NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + ++E+ L E +P+G +RI + L LK FL YPDI Sbjct: 65 ERLANSLGPRFAEIESELDALSEMRERPAGNIRITAGEHAVDSTLLPVLKSFLADYPDIN 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +DN DI D IRL + + + R + M +P YL P++ Sbjct: 125 VEITVDNTLTDIVSGRFDAGIRLGEQVAKDMIAVRIGQDMSMAVVGSPSYLAKYGIPVTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 +L H I +P + W ++ E R+ L NS + ++G G Sbjct: 185 ADLQNHRCINM--RLPTMGGLYAW--EFEKEGYELRVRVDGQLTFNSLRQRIDAAIMGFG 240 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +A +P+ VK + +LVR++++ P Y YP ++T F Sbjct: 241 LAFVPEDAVKAEIASGSLVRVLKEWCEPFPGYYLYYPSRRQHTTAFSLF 289 >gi|134302729|ref|YP_001122697.1| LysR family transcriptional regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|134050506|gb|ABO47577.1| Transcription regulator, LysR family [Francisella tularensis subsp. tularensis WY96-3418] Length = 298 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 12 FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 72 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + +++ RK+ T A+P Y+ P +I + Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--NIVARKIATTRYVLCASPAYINKNGSPSNISD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242 L HN I + L + + P+ S + N+ + ++ CVL GIA Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVK+ N L+ +++D +Y YP+ K+K F N + Sbjct: 241 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291 >gi|121593532|ref|YP_985428.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120605612|gb|ABM41352.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 304 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 142/295 (48%), Gaps = 22/295 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F ++AR S + A +L +S ++ S++++ +E+ +G++L R R L LT +G+ Sbjct: 10 EMAFFSLLARWASLSATARELGISTAAASKRLAQMESRLGVQLVSRTTRRLHLTAEGNTY 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +++ + + + +P G LR+ T+ G++ + + F+ +P IQ+QL Sbjct: 70 LQHARRILAEIDAMEQLVSDMQAEPQGLLRVNATLGFGRSHIAPLVPAFVRRHPQIQLQL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + ++ D D IR +P + +I R+L AAP YL P EL Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPTRPAEL 188 Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238 +H+ I GD + FN G + +++ ++LS + + + G Sbjct: 189 PQHDCIDIRQGDDA-HGVWRFN---------GHRKQETVRLRNHLSTNDGEIAVSWALAG 238 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + ++ + + LV+++ D TP ++ YP+ T ++KAF +F+ Sbjct: 239 MGIVMRAEWDIARYLRSGRLVQVLRDYDTPPADIHAVYPQRHAATARVKAFVDFV 293 >gi|91776942|ref|YP_546698.1| LysR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710929|gb|ABE50857.1| transcriptional regulator, LysR family [Methylobacillus flagellatus KT] Length = 299 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 143/298 (47%), Gaps = 15/298 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF VA SFT AA L L + SIS + LE +G +L R R + LT G + Sbjct: 7 MTVFTRVAELSSFTQAATSLGLPKGSISMAVQKLEAHLGTRLLQRTTRKVVLTHDGELFY 66 Query: 68 RVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ + L E+ ++ G++R+ + + + +L +L FL +P I+I+ Sbjct: 67 QRCKDLLTDMDELESMFLLDETGIQ--GRIRVDVPLAVAREVLMPHLPAFLRQHPGIRIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC IR+ + S L+ R++ + A+P YL+ P ++ E Sbjct: 125 LSSTDRKVDLVAEGFDCVIRV-GSLGDSGLVARQVGLHPIVNCASPAYLQQHGTPQTLDE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H ++ + ++ E+ W I ++ S + VN+ + Q C+ G GI + Sbjct: 184 LTRHFVVHYTQVLGS--EEAYWEYVQGSDIIRMKMQSIITVNNSDAYTQACLAGLGIIQV 241 Query: 245 PD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P YI++D LV ++ + V YP +++ F +++ + +D+ Sbjct: 242 PQAAARPYIMQD--RLVELLPEYRAAPMPVSMLYPNRRHQPRRVRVFMDWLVDRLQDY 297 >gi|309779384|ref|ZP_07674146.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308921942|gb|EFP67577.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 307 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/294 (21%), Positives = 136/294 (46%), Gaps = 14/294 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A +GS + AA L ++ ++S++++ +E +G+ L R R ++LT +G Sbjct: 10 ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ L ++ +PSG LR+ T+ G+ + + E++ YPD+ +QL Sbjct: 70 LERARRILGEIDDLDQLLTQAKGRPSGLLRVNATLGFGRMHIAPAISEYVKAYPDVDVQL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ D D +R +P + ++ RK+ + A+P YL+ P + EL Sbjct: 130 QLSADPPPLNEDLFDVCVRFGEP-PDARIVARKVASNRRLLCASPAYLRERGTPATPAEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240 +HN I I + + + + R + V L+ + + + G G Sbjct: 189 ARHNCIG----IRQGSDAYGVWRLASGKGAKRRTETVHVRGNLTTNDGEIAVNWALEGHG 244 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 I + + ++ + LV+++ TP VY Y + + + +++ F +F+ Sbjct: 245 IVMRAQWDIERYLKSGRLVQVLPQYATPEADVYAVYHQRHQLSSRIRLFVDFLM 298 >gi|154251281|ref|YP_001412105.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155231|gb|ABS62448.1| transcriptional regulator, LysR family [Parvibaculum lavamentivorans DS-1] Length = 303 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 6/292 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD R+F V + S + A +L LS +++ R I+ LE +G KLF R G LT G Sbjct: 6 NWDAYRIFLAVVDTQSLSGAGRRLKLSHATVGRHIATLEKRLGTKLFVREPTGYALTGAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + E + G +R+A + L EF +P I+ Sbjct: 66 ERLRAEVEPMSLAAERALHAASSEDGQAQGLVRVAIPHSIASYWFMPYLDEFAARHPGIE 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+++ + + + AD IR P + +++ RK+ I + YA+ Y + P Sbjct: 126 IEIVNEVTQVSVKRRDADIVIRPYGPGR-ENVVGRKIGRIGVGFYASRSYAERFGLPSKR 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +E +H +I FG + +E +WLA V + R++ L+ S ++Q G GI+ Sbjct: 185 EEWKEHRIIGFGGRAAE-VELADWLAHVTQG---ARVA-LRCFSDADLVQAVRAGVGIST 239 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L +L+RI + ++ L++T ++A +F+ KA+ Sbjct: 240 LVCLTGDHYDDLIRIAPQKLANGTEMWLLAHPDLRDTAPVRAVIDFLGEKAK 291 >gi|28900220|ref|NP_799875.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260361655|ref|ZP_05774682.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] gi|260880782|ref|ZP_05893137.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|260896508|ref|ZP_05905004.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|28808531|dbj|BAC61708.1| putative transcriptional regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|308089249|gb|EFO38944.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308092598|gb|EFO42293.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308112751|gb|EFO50291.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] Length = 293 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 136/274 (49%), Gaps = 11/274 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F V + GSFT AA L L ++++SR+I LE +G +LF+R R L+LT +G Sbjct: 4 DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V L++ + S++ GK+++ + ++ LQ L EF YP +++ Sbjct: 64 YYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEH-LQPILFEFQDQYPQVELD 122 Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++N ID+ D A+ + S ++ RK++T+ A+P+YL+ P +++ Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL H I F P D W +P++ N+ I VL GI+ + Sbjct: 182 ELSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 P +VK ++ LV+++ T + YP+ Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPQ 270 >gi|77458585|ref|YP_348090.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382588|gb|ABA74101.1| putative LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 321 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 11/296 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF V R SF AA++L S + +S++IS LET + KL +R R + LT+ G + Sbjct: 28 EDLKVFLTVIRKNSFASAADELGFSPAYVSKRISVLETTLASKLLHRTTRRIALTDDGER 87 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + E+ ++ +P+G L I ++ G+N + + + P + I+ Sbjct: 88 VRIWAEKLLGDFDQFLGEISQARHQPAGSLHICSSFGFGRNHVAPAISQLSRACPKLDIR 147 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D I + + L RKLV+ A P YL+ P S+++ Sbjct: 148 LDVFDRVVDLVGEGFDLEILVGDDLPGQHL-ARKLVSNRRVLCATPEYLERRGTPQSLED 206 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 L H+ + ++ + F W + D R++ L NS ++++ + G GI L Sbjct: 207 LKDHDCL----VLKERNNAFGIWTLSKDGQEETVRVNGPLSSNSGEIVLEWALSGGGILL 262 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + VK + LV+++ D T S V+ YP L + KL+ F+ RD Sbjct: 263 RSMWDVKPMLEQGRLVQVL-DGYTQSANVWAVYPTRLSESAKLRVCVEFLEEYFRD 317 >gi|330892038|gb|EGH24699.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 266 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 15/251 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++LF+R R ++LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + L+ + SG LR+ GQ ++ L +L P + I L Sbjct: 66 PHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L +P YL +P ++EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCVSPDYLARHGKPALLEELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243 H I ++ W GEP Q NS ++ C G G+A+ Sbjct: 185 HHPCI--------ALQAMPWWPFTRN--GEPITIRAQGPFSANSVEAVRTACKQGMGLAM 234 Query: 244 LPDYIVKDNPN 254 L + V+ N Sbjct: 235 LTYWDVRQEIN 245 >gi|158422960|ref|YP_001524252.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329849|dbj|BAF87334.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 309 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 13/298 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + V V +GS + A L +++SR+I+ LE +G LF R RGL LTE G Sbjct: 4 FDAMSVLLAVVEAGSLSAGARLLRAPLATVSRKIAELELHLGTPLFVRSRRGLALTEPGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LE + E P G L + I G+ L EFL +P+I + Sbjct: 64 AFVAASRRILSQLEEAEREAAGEFSTPRGTLHVTAPISFGERHLLPIALEFLAEHPEISL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L ++ I + ++ D A+R+ ++ S+LI ++ +H A+P YL P + Sbjct: 124 RLTLTDRQISLGDEHIDVALRIGH-LEDSALIATRVGAVHRVICASPAYLARRGVPRRPE 182 Query: 185 ELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H I+F + P+ + A P P+ L VN+ + +Q G GI Sbjct: 183 DLATHEGISFQGFAVAPEWRYRRDSAAFSIEP--SPK---LAVNTTEAAIQAARAGLGII 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295 + Y V D + L ++ + + V YP+A K+++F ++ L+AR Sbjct: 238 RVLSYQVADELRSGELQVLLPESVPEPLPVSLIYPQADMLPLKVRSFLDWTVPRLRAR 295 >gi|221199018|ref|ZP_03572063.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221205278|ref|ZP_03578294.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221175069|gb|EEE07500.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221181469|gb|EEE13871.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 309 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 9/272 (3%) Query: 23 AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 AA QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ Sbjct: 22 AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 +++E P+G+LRI + L EF YP IQ+ +I++++ +D + D Sbjct: 82 QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDVIVNDRVVDPVEEGFDI 141 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202 A ++ PI S SLI+R+L + A+P YL+ P +EL +H + + Sbjct: 142 AFQIFPPI-SDSLIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRN- 199 Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258 W T + E + ++ NS + +Y + G G+ LP + D LV I Sbjct: 200 ---RWTLTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPI 256 Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + YP + K+KA F+ Sbjct: 257 LTDFQIAPLSFAAVYPATQRQALKVKALVEFL 288 >gi|208780014|ref|ZP_03247357.1| transcriptional regulator, MarR family [Francisella novicida FTG] gi|208744018|gb|EDZ90319.1| transcriptional regulator, MarR family [Francisella novicida FTG] Length = 297 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 17/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 12 FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 72 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + ++ RK+ T A+P Y+ P +I + Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGS-GIAL 243 L HN I + L + + P+ +++ + ++ CVL GIA Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISADNIEFIKACVLNDFGIAQ 241 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVKD N L+ +++D +Y YP+ K+K F N + Sbjct: 242 FHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVNLV 291 >gi|309781467|ref|ZP_07676203.1| regulatory protein [Ralstonia sp. 5_7_47FAA] gi|308919880|gb|EFP65541.1| regulatory protein [Ralstonia sp. 5_7_47FAA] Length = 305 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 86/310 (27%), Positives = 140/310 (45%), Gaps = 37/310 (11%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W+ F V +GSFT AAE L + +S+ S +S LE +G++L R R L LTE Sbjct: 3 TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAGLGVRLMTRTTRQLRLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 GS + + ++ +L + +S +G LRIA ++G L + L YP Sbjct: 63 AGSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPH 122 Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +QIQ+ + + D ++ Y + + + + SSL+ R++V I YA+P L R P Sbjct: 123 LQIQVHISWEQPDLLASGYDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPTLLAE-RPP 181 Query: 181 LSIQELDKHNLITFGDLIP-KCM---EDFNWLATVDRPIGEPRISCLQV---------NS 227 L T DL C+ +D +W RP+GEP + ++V N+ Sbjct: 182 LK----------TPADLAGWPCLSGPDDASW---AFRPVGEPAVEPIEVPIQPRLQTLNA 228 Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + + V G G+A + + LVR++ D + VY AL KL Sbjct: 229 EMR-ARAAVRGLGVARMARSVGDTEVAAGRLVRVLPDFELTALRVY-----ALMPARKLV 282 Query: 285 AFRNFIFLKA 294 + +FL A Sbjct: 283 PRKVRVFLDA 292 >gi|325529165|gb|EGD06141.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 308 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 139/293 (47%), Gaps = 16/293 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F + SGS + AA +L L+ ++IS++++ +E+ G+ L R R + LT +G Sbjct: 10 LSFFSTLVASGSLSAAARELGLTPAAISKRLTQMESRAGVGLINRTTRRMMLTPEGELYL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ L + P G LR+ T+ G++ + + F+ Y + +QL Sbjct: 70 QHARRILDEIDELAELLGTAKKSPKGLLRVNATLGFGRSHVAPAISRFVTKYRQVSVQLQ 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D D IR +P + +I R+L AAP Y+ + P + +L Sbjct: 130 LSVTPPPLTDDAFDVCIRFGEP-PDTRVIARRLAGNRRLLCAAPSYIASHGLPTTAHDLT 188 Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240 +HN I I + E + W T R + +++N L+ +++ + G G Sbjct: 189 RHNCIG----IRQGDEAYGVWRLTSGRGASR-KTEAVRINGTLTTNDGEIAVKWALEGHG 243 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + ++ +K + +LVR++ D TP+ ++ Y + + + +++AF FI Sbjct: 244 ILMRAEWDIKRYLADGSLVRVLPDYETPNADIFAVYSQRHQMSNRIRAFVEFI 296 >gi|317401900|gb|EFV82507.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 306 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 15/293 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 DWD LR F VAR+ + AA +L + +++SR+I LETE+ LF + + G LTE Sbjct: 2 LDWDSLRYFLEVARTQRVSAAARRLGVEHTTVSRRIRALETELDTLLFEKSRSAGFVLTE 61 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L ++ + + + L SG LRI T G +L +F YP Sbjct: 62 DGQRLFVHAEQMESTVHSARETLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ + + +S AD AI + +P Q + KL + Y P YL Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCSKLCDYTLRLYGTPEYLARHPPIR 180 Query: 182 SIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H+ I + D L + + L R + L+ S ++ + G Sbjct: 181 GRADLAGHSFIGYVDELLFSERLRYLEDLLPASRVV-------LRSTSVVAQYHAALQGQ 233 Query: 240 GIALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP +I +P L ++E IT SF +Y C+ E L+ ++ FI Sbjct: 234 SLAILPCFIAAQDPRLKPVLEKEVEITRSFWMY-CH-EDLRKLKRVTVLWEFI 284 >gi|301026539|ref|ZP_07189967.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] gi|300395470|gb|EFJ79008.1| LysR substrate binding domain protein [Escherichia coli MS 69-1] Length = 307 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQLLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|296163090|ref|ZP_06845863.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295886678|gb|EFG66523.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 294 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 134/293 (45%), Gaps = 21/293 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS T AAE+ +S + + + I LET + +L R R +LTE G + + Sbjct: 7 MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLATRLLTRTTRRQSLTEIGRQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + + P G L++ + G + + E+L +PDI ++L Sbjct: 67 EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFAPAMTEYLTAWPDITLELD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ ID+ + D ++R+ + + SS + R L M A A+P YL P + ++L Sbjct: 127 LSNRVIDLVEEGFDASVRIGQ-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCVLGSG 240 +H +C+ +W +G R + N+ ++ + G G Sbjct: 186 QH----------ECLGFLHWGREGSWRLGGETADENHLRAGRFRANNGQALKVAALHGFG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L P+ ++ + LV ++ED + V+ YP + T KL +F +F+ Sbjct: 236 LVLQPEALLAREIASGELVSVLEDYLPEGVPVHLLYPRDRRATPKLTSFIDFV 288 >gi|292486778|ref|YP_003529648.1| HTH-type transcriptional regulator YhjC [Erwinia amylovora CFBP1430] gi|292900822|ref|YP_003540191.1| LysR family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291200670|emb|CBJ47802.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291552195|emb|CBA19232.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia amylovora CFBP1430] Length = 305 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 126/269 (46%), Gaps = 10/269 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA+Q+ LS S++S+ ++ LE E+ +KL R R L LTE G Sbjct: 7 MSVFTKVVELGSFTAAAKQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGKIYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +L + P G LRI ++ + QNLL KE L YP + + L+ Sbjct: 67 QGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQEYPGLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D AIR+ + SSL ++L ++ M AA YL P ++ Sbjct: 127 TGIPAPDLIADGLDLAIRV-GALPDSSLFAKRLGSMPMVVCAAKAYLLQFGTPEKPSDIS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H+ + + + P DF+ ++ I N +++++ G+GIA +P Sbjct: 186 NHSWLEY-SVRPD--NDFDLISPEGIAIRLSPQGRFATNDAQTLIRWLKAGTGIAYVPLM 242 Query: 248 IVKD--NPNLVRIM----EDVITPSFTVY 270 + D N V I+ + V P + +Y Sbjct: 243 WIIDEINAGEVEILFAHYQSVPRPVYALY 271 >gi|238782977|ref|ZP_04627005.1| HTH-type transcriptional activator aaeR [Yersinia bercovieri ATCC 43970] gi|238716180|gb|EEQ08164.1| HTH-type transcriptional activator aaeR [Yersinia bercovieri ATCC 43970] Length = 303 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LETE+ +KL R R + LTE G Sbjct: 6 RMSVFARVVECGSFTAAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L + L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIGDGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLLQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMINFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|209520633|ref|ZP_03269386.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209498916|gb|EDZ99018.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 336 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 136/297 (45%), Gaps = 17/297 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EF+ YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ +D+ D D A+R+R P ++++++ R L AP L+ P Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTEQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L+ +L++ + +P D + + P G EPR L ++I + Sbjct: 185 LTPADLNRFETLD----VPTS--DGRHVYNLISPDGTRHAHEHEPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + ++ + SF Y + G + A R F+ Sbjct: 236 AVLAGVGIAALPEMMYGAALRAGQLSPVMPGWSFPTPQLYAVFVSRQGMVPAVRAFV 292 >gi|146307231|ref|YP_001187696.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575432|gb|ABP84964.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 311 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 4/288 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F VA F+ AA +L +S S++S+ I LE +G+ LF R R + LTE G + Sbjct: 7 DGLLTFIAVAEEKGFSAAAVRLGVSPSAVSQSIRNLEQRLGLVLFNRTTRSVCLTEIGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ EL + PSG LRI +LQ L+ F+ YP+I ++ Sbjct: 67 YLERVQPALELLKSASQELGREADHPSGLLRINVPRAAYLIILQPVLRRFMAAYPEINLE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++N +DI D IR ++ + T+ A+P YL P Q+ Sbjct: 127 IRVENLLVDIVSQGFDAGIRFGDAVEKDMVAIAVGPTLQAQVIASPTYLVQHGVPTHPQQ 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LL 244 L HN I + +E +N+ ++ PR L +N +++ + G G+A ++ Sbjct: 187 LTMHNCIGYRHTTSGQIERWNFSRGDEKYDLTPR-GRLILNDSEILVRAALEGLGVAYMI 245 Query: 245 PDYI--VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 YI + LVR++ D ++ YP+ + KL+A +F+ Sbjct: 246 NGYIEALVAQGRLVRLLADWSPTLPALHLYYPDRRRVPAKLRALIDFL 293 >gi|91789268|ref|YP_550220.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gi|91698493|gb|ABE45322.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 306 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 132/290 (45%), Gaps = 12/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A SFT AA ++ +++SR +S LE +G++LF R R + LT+ G Sbjct: 13 IELFCLAAELSSFTAAAAAASVTPAAVSRSVSRLEERLGVRLFVRTTRQIRLTDGGRVYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + + P+G LRI+ + L +F YP +Q+ + Sbjct: 73 EQCRQALLQLVDAERLVTGGQAAPAGLLRISMPTPYAHYRVLPLLPQFRKRYPQVQVDVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P S+LI RKL + AAP YLK +P ++ +L Sbjct: 133 LSNRNIDFADEGYDLAIRGRAP-DDSNLIARKLEDAALVLVAAPSYLKRAGKPKTLDDLQ 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 KH+ I F +P W D + + CL + L + G+G+ Sbjct: 192 KHDCIQFE--LPSTGRKIPWTFQHDGKDIDVVTKGSYCCL--DDVLGVATLVRSGAGLVQ 247 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 YIV+ N +LV +M S YP A + +++ F +F+ Sbjct: 248 TYRYIVEKDLKNGDLVELMPQFGGSSRPFILLYPHARHLSLRVRTFVDFL 297 >gi|169796262|ref|YP_001714055.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213157003|ref|YP_002319048.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|215483717|ref|YP_002325940.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|301345502|ref|ZP_07226243.1| LysR substrate binding domain protein [Acinetobacter baumannii AB056] gi|301594992|ref|ZP_07240000.1| LysR substrate binding domain protein [Acinetobacter baumannii AB059] gi|332855393|ref|ZP_08435849.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332867261|ref|ZP_08437511.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169149189|emb|CAM87069.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|193077106|gb|ABO11877.2| transcriptional regulatory protein [Acinetobacter baumannii ATCC 17978] gi|213056163|gb|ACJ41065.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|213986383|gb|ACJ56682.1| LysR substrate binding domain protein [Acinetobacter baumannii AB307-0294] gi|332727483|gb|EGJ58910.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332734094|gb|EGJ65227.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 296 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V G+F+ AA L +S+ +++++ LE ++ L R R + LT G K Sbjct: 5 DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTGCGEK 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + E E+ + P G+L++ T + LQ + +F+ YP I+I Sbjct: 65 FYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D++ D IRL + SL K++ T + YA P Y P S++ Sbjct: 125 LFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLPTSLE 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240 EL +H LI + D K + + E +C V N+ ++ C+ G Sbjct: 183 ELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP++I + L + +ED + +Y +P + K+K F +F+ Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288 >gi|194433531|ref|ZP_03065809.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012] gi|194418294|gb|EDX34385.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012] gi|332093296|gb|EGI98355.1| hypothetical protein SD15574_1907 [Shigella dysenteriae 155-74] Length = 307 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLKVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|325917714|ref|ZP_08179904.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria ATCC 35937] gi|325536076|gb|EGD07882.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria ATCC 35937] Length = 299 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 6/283 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+VF VAR GSFT AA QL +SQS++S + LET +GI+L R R ++ TE G++ Sbjct: 7 NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSTTEAGAR 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + +++ L + KP+G +RI T + L + L YPD++I+ Sbjct: 67 LFATVAPRLQEIDDELSALTDFRDKPAGTIRITTAGHAADAYVWPALSKLLPDYPDLKIE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D DI + D IRL + + M A P Y + P + + Sbjct: 127 VTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPPQRMAVVAVPGYFVHHTIPAAPAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +HN I G +P W R I NS ++++ + G+G+A L Sbjct: 187 LAQHNCI--GLRLPTHGGLLAWEFEQSGREIKVRVDGQWTFNSSGAMLRAALAGAGLAYL 244 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 P+ +V D+ L R++ED P Y YP +++ LK Sbjct: 245 PESMVLDHIAAGQLRRVLEDWCEPFEGYYAYYPSRRQSSSALK 287 >gi|311105835|ref|YP_003978688.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760524|gb|ADP15973.1| bacterial regulatory helix-turn-helix protein, LysR family protein 80 [Achromobacter xylosoxidans A8] Length = 302 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 37/287 (12%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F A +GSFT AA++LHL+ S++ + ++ LE + +LF R R L LT+ GS + Sbjct: 10 IEAFVTTADAGSFTAAADRLHLTASAVGKSVARLEARLRTRLFERSTRRLALTDAGSAYY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R V +L+ + L +P G+LR+ G+ + L +F +P ++ + Sbjct: 70 RTCVRVLAELQDAEAVLAAQRQEPVGRLRVDLPATFGRRVALPLLLQFAQRHPQLRPCVS 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D++ D A+R+ P Q + L R L + + A+P YL PL+ +L Sbjct: 130 FTDRFVDLADVGIDVAVRIGGPPQWAPGLGHRYLGSERVIFCASPQYLARRGTPLTADDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----------------SCLQVNSYLS 230 +H+ + +G R GEP + + ++S + Sbjct: 190 AQHDAVAYG-----------------RADGEPPVWRIAQGAGPASLRSVDGVMTLDSAEA 232 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 + G GIA L ++ D + +V ++ + +Y +P Sbjct: 233 QVDAVAAGFGIAQLATWLAADALRDGRVVEVLPQLAAEGLPLYLVWP 279 >gi|59713602|ref|YP_206377.1| LysR family transcriptional regulator [Vibrio fischeri ES114] gi|59481850|gb|AAW87489.1| transcriptional regulator, LysR family [Vibrio fischeri ES114] Length = 311 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 23/265 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VV GSFT AA++L ++ S++S+ I+ LE + +KLF R R L +TE G K++ Sbjct: 13 LATFIVVVNEGSFTAAAKKLGVTPSALSKLITRLENALSVKLFERTTRSLLITESGKKIY 72 Query: 68 RVTS-EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + V + I E +V PSG L +A +LQ + FL YP IQ++L Sbjct: 73 QQSVIMVEAAQQAVDISSSEHTV-PSGSLTVAAPKAFLTIVLQPLITPFLTKYPKIQLKL 131 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + DID+ D RL KP + L+ +++ +++ A+P YL+ P QE Sbjct: 132 RASDGDIDMIAQGIDVVFRLTDKPTE--GLVMKEIGKVNLSLCASPTYLEERGIPHLPQE 189 Query: 186 LDKHNLITFGDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H+ + G+ + +F + +A R VN + G Sbjct: 190 LANHDCLFLGETTTDHIWEFVKGTESHVIAVSGR---------YAVNHSQMRLNGVKDGF 240 Query: 240 GIALLPDYIVKD---NPNLVRIMED 261 GI + PD+++K+ N ++ ++ D Sbjct: 241 GIGIFPDFVIKEALANNEVISVLSD 265 >gi|83945226|ref|ZP_00957575.1| transcriptional regulatory protein [Oceanicaulis alexandrii HTCC2633] gi|83851396|gb|EAP89252.1| transcriptional regulatory protein [Oceanicaulis alexandrii HTCC2633] Length = 329 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/277 (24%), Positives = 139/277 (50%), Gaps = 19/277 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDWD LR+F+ + SGS + AA +L + Q ++SR++ LET +G +L R A G+ LT Sbjct: 8 FDWDDLRIFHALVSSGSMSSAARKLGIGQPTVSRRLEQLETRIGARLVTRGAEGVELTAI 67 Query: 63 GSKLHRVTSEVYHKLETTQIELQ----ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 G R+ ++V +++T +++ ++ +G + +A + + L F+ Sbjct: 68 G---ERIWAQV-QIMQSTAGDIERIAHQADRADAGTVHLAAPEGVAGYWIARQLPSFVEA 123 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 P I ++ I D ++++D +D +++ + + S + +L T+H +AA YL Sbjct: 124 NPAINLE-INTRVDGELALDQSDICLQMTES-KRMSHVATELGTLHYVPFAARAYLDTYG 181 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P S+ ++ H + DL+ + +W A+ + + P L ++ L++++ Sbjct: 182 APKSVADVLNHRI---ADLVSYSAQQTHWPKEASAIKQMMNP---SLTTDNSLALVEAVR 235 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273 G+ I+++P Y K P LV + + P T++ Y Sbjct: 236 AGTAISMIPTYAAKVQPELVHVDLGLEVP-ITLWMVY 271 >gi|239813099|ref|YP_002942009.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239799676|gb|ACS16743.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 303 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 3/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A +G FT AA ++ +++SR IS LE +G++LF R R + LT+ G Sbjct: 13 IELFCLAAETGGFTSAALAAGVTPAAVSRSISRLEKRLGLRLFVRTTRSVRLTDAGRSYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E+ PSG LRI+ G + + L F +PDI++ + Sbjct: 73 AQCRQALAQLAEAEREVMGQQALPSGMLRISVPTTYGHHRILPLLPAFRERFPDIRLHVH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + D A+R+R S+LI R L + A YL+ P ++ +L Sbjct: 133 LSNRNIDFVEEGYDMAVRVRAQ-PDSTLIARHLEDADLVVVATRKYLRRAGTPRTLDDLA 191 Query: 188 KHNLITFGDLIPKCMEDFNWL 208 H I F +P +WL Sbjct: 192 AHECIQFE--LPSSGRRISWL 210 >gi|238758348|ref|ZP_04619526.1| HTH-type transcriptional activator aaeR [Yersinia aldovae ATCC 35236] gi|238703471|gb|EEP96010.1| HTH-type transcriptional activator aaeR [Yersinia aldovae ATCC 35236] Length = 303 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 112/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT A QL +S SSIS+ +S LETE+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVECGSFTATARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTVEMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ + D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIANGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLNAGTGIAYAP 240 >gi|146310752|ref|YP_001175826.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145317628|gb|ABP59775.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 317 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 115/256 (44%), Gaps = 15/256 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +S W LR F V + +F+ A + +S S +SR I LE +G +LFYR+ R + T Sbjct: 7 ISIRW--LRFFIDVYETQNFSVVARREGISASQVSRVIHQLEDAIGQQLFYRNTRAVMPT 64 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G R V LE + EL E + +PSG +R+ + GQ + L YP Sbjct: 65 ESGHLFVRYARTVTGSLEDARRELDERTREPSGVIRMNAPVFFGQRHIAPWLPALAERYP 124 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L L + ID D AD R+ + + SS R H A+P Y++ P Sbjct: 125 RLNLDLTLTDDYIDPHKDAADVIFRIGE-LTDSSFHARIFGQQFYHLAASPAYVQKHGAP 183 Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYC 235 +L +H + + G P WLA +P G P L N+ +++ Sbjct: 184 EGPADLARHQCLVYRGSSGPN-----RWLAR--QPGGAWVHYPVTPRLSSNNAETLLIAA 236 Query: 236 VLGSGIALLPDYIVKD 251 + G GI L PD+++ + Sbjct: 237 LGGMGIVLFPDWLIGE 252 >gi|187921288|ref|YP_001890320.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719726|gb|ACD20949.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 299 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 19/297 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + LR+F VAR SF+ AA +L +SQS SR +S +E E+G L R R + TE Sbjct: 1 MDINALRIFCRVARLQSFSAAARELSISQSQASRAVSDIEAELGTLLLARTTRAVIPTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ V +L+ +++ ++ G LR+ G + L F +P + Sbjct: 61 GADYLIRVEAVLDQLDDAGQSVRQDELR--GTLRVGMPTSAGVREVIPRLPRFAERHPLL 118 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I ++LD++ D+ D D AIR+ + S+ R L + A+P YL C PLS Sbjct: 119 RIDVVLDDRRQDLVRDAVDVAIRI-GTLPDSNATARLLTSYARMIVASPAYLARCGTPLS 177 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L H ++ +G P W T + PI EP IS ++ ++ Sbjct: 178 PDALVGHRIV-YG---PAATVSTAWTFTRKGITSNVPI-EPNISFSDNEGAVAAVKA--- 229 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G GI L + + + +LV I+ D V+ +P +AF NF+ Sbjct: 230 GLGITSLGYWACREELEEGSLVPILTDWSMVGTKVHAYFPLGRATRTAARAFINFLL 286 >gi|78066999|ref|YP_369768.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77967744|gb|ABB09124.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 324 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P Q+++++ R L AP L P Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPDDLSGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R F+ Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|187939567|gb|ACD38713.1| LysR family transcriptional regulatory protein [Pseudomonas aeruginosa] Length = 309 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 136/292 (46%), Gaps = 7/292 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +G+F AA QL +++S ++ +I LE + LF+R R + L+E G + Sbjct: 7 IEAFVRVAETGNFAKAAVQLGVTRSVVTHRIQQLEHFINAPLFHRSTRHVRLSEVGETYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + +++ KP+GKLR+ + L EF LYPDI++ +I Sbjct: 67 KECADMVAGFNSLTEQMRNLRAKPTGKLRVQMLPGFAIDHFGPLLAEFTALYPDIEVDVI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ D + D A ++ P Q+ +LI+RKL ++ A+P YL+ P +L Sbjct: 127 VNDRLTDPIEEGFDIAFQMFPP-QAETLIERKLFSVRRLFLASPEYLQRHPAPERPADLL 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + + + F D + ++ NS + Y + G+ + LP Sbjct: 186 EHRIGLYEGYPSRNRWQFQ---HGDETVELSLAGQVRSNSVHLLRDYALAGTALVCLPTL 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + ++ L+ ++ D SF +P + K+++ +F+ + D Sbjct: 243 VAHADLESGRLLPLLIDYPLSSFNFSAVFPATQRRALKVRSLIDFLVERISD 294 >gi|126732381|ref|ZP_01748181.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] gi|126707250|gb|EBA06316.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] Length = 294 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 13/287 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R + VAR G+ + AAE L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 3 NWDEIRTAFQVARLGTVSGAAEVLGVHHATVIRHIDALEGRLGVKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L RV + + + ++ SG+L + + + L+ L F +PD+ Sbjct: 63 TDLLRVAQTTADQFQQLEGRIRGRGSDVSGELLVTSLVAFAP-LMVPALTSFRAAHPDVV 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+ + ++ + A A+R Q + + + Y Y+ P Sbjct: 122 IRFLTGDRLFRLEYGEAHVALRAGNAPQEPDNVVQAFARQAIGLYGHKDYIARRGRPSGA 181 Query: 184 QELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H+ + D P+ F WL P E R+ +S + + Q + G+G+ Sbjct: 182 ADLVNHDFVGHDD--PENRAPFYRWL-QAQVPYAE-RVVFRSEDSRV-VEQALLAGAGLG 236 Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAF 286 + +++P++ +M ED +P + V L T K++AF Sbjct: 237 FMSTREARNHPDVELVMEPKEDWTSPLWLVTHV---DLHRTAKVQAF 280 >gi|118590643|ref|ZP_01548044.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] gi|118436619|gb|EAV43259.1| transcriptional regulator, LysR family protein [Stappia aggregata IAM 12614] Length = 314 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 131/290 (45%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + A ++ LS + +S++I LE ++G +L R R + +TE G + Sbjct: 7 MEIFARVVSAGSMSAAGREMSLSPAVVSKRIRRLEEKLGTRLLQRTTRQIAMTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S K G L++A G+ + +L FL D+ + L Sbjct: 67 ERVVAILASVEEAESFVSRGSAKARGNLKVAVPTSFGRLHIAPHLGTFLAENTDLSVNLD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 L + +DI D D AIR+ + + SSL+ R+L +H A+P YL P SI++L Sbjct: 127 LSDDFVDIVGDGYDLAIRIAE-LSDSSLVARRLAPVHRVLCASPAYLDKYGIPESIEDLV 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H I + P + N + TV + ++ NS + + + G G+AL Sbjct: 186 ANHVTIAATNQDPWRLAGPNGIETVRTQ------APIKTNSNEVVRECLLAGVGVALRST 239 Query: 247 YIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 + V P L ++ P + +Y YP K++ F +F+ Sbjct: 240 WDV--GPELREGKLQILLPEYRASKDVGLYAVYPSRQFLPAKVRVFIDFL 287 >gi|332161959|ref|YP_004298536.1| Lys family transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666189|gb|ADZ42833.1| Lys family transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 298 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 14/297 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GSF+ A QL +S S+ISR +S LE + +L R R L L+E G ++ Sbjct: 1 MAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEEVF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + + + S +P G +R++ +G+ ++ ++ EFL Y I +QLI Sbjct: 61 KRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDVQLI 120 Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D + D IR+ +P ++ R+L+ I A P YL PL +L Sbjct: 121 LDDRYVDFIDENVDLVIRITNQP--PPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPHDL 178 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALLP 245 +H+ I G+ F + R + L +++Q+ +GS LP Sbjct: 179 AQHSCIYLGETPGDARWKFRQGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGS----LP 234 Query: 246 DYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + + LV+++ + + + S ++ YP KL+ F ++I + RD Sbjct: 235 YFTARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 291 >gi|295676099|ref|YP_003604623.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gi|295435942|gb|ADG15112.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 335 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 138/302 (45%), Gaps = 27/302 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EF+ YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ +D+ D D A+R+R P ++++++ R L AP L+ P Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTEQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L+ +L++ + +P D + + P G EPR L ++I + Sbjct: 185 LTPADLNRFETLD----VPTS--DGRHVYNLISPDGTRHAHEHEPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRN 288 + G GIA LP+ + + +++P SF Y + G + A R Sbjct: 236 AVLAGVGIAALPEMMYG-----AALRAGLLSPVMPGWSFPTPQLYAVFVSRQGMVPAVRA 290 Query: 289 FI 290 F+ Sbjct: 291 FV 292 >gi|254521894|ref|ZP_05133949.1| regulatory protein, LysR:LysR, substrate-binding [Stenotrophomonas sp. SKA14] gi|219719485|gb|EED38010.1| regulatory protein, LysR:LysR, substrate-binding [Stenotrophomonas sp. SKA14] Length = 301 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 10/248 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F ARSGSFT AA+ L +S+S++ + I+ LE +G++LF+R R + LT G Sbjct: 8 NGLVTFVTTARSGSFTEAADALGISRSAVGKAIARLEARLGVRLFHRTTRRIALTTDGEA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + L + + PSG+LRI G+ ++ L YPD+Q+ Sbjct: 68 YYASCAAALEEISAAEACLGSAGL-PSGRLRIDMPSSFGRLVVLPVLLRLCRQYPDLQLT 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +D + D IR Q+ L+ R+L + AAP YL+ P +++E Sbjct: 127 MTFTDHFVDPVEEGIDLLIRFGGLHQAEHLVARRLGRQRLVTCAAPAYLRAHGTPQTVEE 186 Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIA 242 L + +++ F + + W D G P + Q+N +++ + G GI Sbjct: 187 LAQQRSIVGF-----RHGQPVAWRIGSDDAEGTFIPN-AAYQLNDGDAVIDGAIAGLGIC 240 Query: 243 LLPDYIVK 250 +P+ +V+ Sbjct: 241 QMPESLVR 248 >gi|182678419|ref|YP_001832565.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634302|gb|ACB95076.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 305 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 15/251 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V R+GSF+ AA + ++ S+I RQI LE ++G+ L R R LTLT+ G +LH Sbjct: 9 LSTFVDVVRAGSFSGAARRRAMTPSAIVRQIDTLELDLGVALLVRSTRALTLTDAGRRLH 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L T E+ SG LRIA G+ + L +P ++++L Sbjct: 69 ERALQLLDDLADTHAEVSAFDGSVSGTLRIACFPTFGKRYVLPVLGTLQAEHPSLKVELD 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D ++ D +R+ + + S+LI KL + A+P YL P +L Sbjct: 129 LTERLADPVLERLDVVVRMGQ-LSDSTLIATKLAPLTRLLVASPAYLAQAGVPGGTVDLA 187 Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQYCVLGSGI 241 H L+ DL+ W + P G R+ + + + ++ V G GI Sbjct: 188 SHRLLDKLHGADLL-------GWREVLGCPAGHAGNGRV-VFRSDDFEALRAAAVAGMGI 239 Query: 242 ALLPDYIVKDN 252 A L ++V + Sbjct: 240 AFLSSWVVGPD 250 >gi|78059647|ref|YP_366222.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77964197|gb|ABB05578.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 313 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AA++L ++ + SR ++ LET + +L R R + LT+ G + Sbjct: 7 MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + E ++ KPSG+L + T GQ + + + YP + ++L Sbjct: 67 DRCQRILGYIEEAESEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L DI + D +++L + S L+ ++L +H A+P YLK P +++EL Sbjct: 127 LSQHVPDIIDEGYDVSLQLSATELPDSGLVSQRLGEVHSVLCASPAYLKERGTPRTVREL 186 Query: 187 DKHNLITF-GDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 D H + + P+ ++ + T D P+ + QVN ++ G GI Sbjct: 187 DGHACLQIVTPVFPRDRWHLDGPDGPETFDLPLPD-----FQVNIADALGAALRAGLGIG 241 Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + LVR++ D TVY Y K++ F +F+ Sbjct: 242 SLPMSSALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292 >gi|85706768|ref|ZP_01037860.1| transcriptional regulator, LysR family protein [Roseovarius sp. 217] gi|85668826|gb|EAQ23695.1| transcriptional regulator, LysR family protein [Roseovarius sp. 217] Length = 323 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 139/300 (46%), Gaps = 16/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 33 NWDEVRTAYNVARIGTVSGAAEVLGVHHATVIRHIDALEERLGVKLFQRHARGYTPTEAG 92 Query: 64 SKLHRV---TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L RV T + +++L +I+ Q + V SG+L + T+I +LL L F YP Sbjct: 93 DDLLRVAQATDDQFNQL-AGRIKGQGNDV--SGEL-VVTSIGGLSHLLVPVLAAFQHDYP 148 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 + ++ + ++ + A AIR P Q +++Q YA+ Y+ Sbjct: 149 GLVVRYLTGDRLFRLEYGEAHVAIRAGSVPDQPDNVVQ-PFFQQQFTLYASEGYVARYGL 207 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++L KH I D PK F WL D GE + + + + G Sbjct: 208 PKGTEDLAKHRFIGADD--PKTRAPFLRWLQ--DNVPGEAIV--FRSGDVHAQRNAILAG 261 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 +GI + P L+++M + ++ L T K++AF + + +A W+ Sbjct: 262 AGIGFTSVLQAAEMPGLIQVMPPRPEWAAPLWLVTHMDLHRTTKVQAFLSHLKERAAAWQ 321 >gi|293393832|ref|ZP_06638139.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291423659|gb|EFE96881.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 287 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 19/276 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW L+ F V+ARSGS + AA +L +++ R+++ LE + + L R R LT+ Sbjct: 2 IDWQDLKHFVVLARSGSLSAAARELGCDHATVGRRVAALEKSLALPLITRLPRSTPLTQH 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + +EV + + + ++ ++ +R++ + + + EF +YP I Sbjct: 62 GRVIAGLAAEVEQQTQAIERYVRATAETRQATVRVSAPPSVAARAIAPRMAEFQQVYPHI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181 + L + ++ AD A+R+ +P Q L QR + I +A YAAP Y Sbjct: 122 TLALSGEAHLAELDRGAADIAVRMVRPQQPDLLTQR--IGIMRYALYAAPDY-------A 172 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 S+ E H +T+ + V DRP+ Q + S+++ G G Sbjct: 173 SLPEA-AHRFLTYDARYRQQPHQQWLQQLVNDRPV------VFQASDLFSLIEAARSGLG 225 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPE 275 LP ++ D+P L+++ + P+ ++ YP+ Sbjct: 226 ATALPTFVADDDPLLIKLPTAIPAPTRELWLVTYPD 261 >gi|254489769|ref|ZP_05102964.1| LysR substrate binding domain protein [Methylophaga thiooxidans DMS010] gi|224464854|gb|EEF81108.1| LysR substrate binding domain protein [Methylophaga thiooxydans DMS010] Length = 301 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 134/293 (45%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F +A + + + A ++ LS + S I+ LE +G++L +R R ++LTE+G Sbjct: 4 DHLKLFTRIAVTENISAAGNEIGLSPAVASSYINKLEKSLGVRLVHRTTRQVSLTEEGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 EV +E + + PSG LRIA L LK+F YP++++ Sbjct: 64 FLPHAREVLESVEAARSSVGAGESIPSGTLRIAAPASFAHMHLIPVLKDFTERYPELKLD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ D AIR ++ S+LI RKL A+P YL EP++ + Sbjct: 124 LRLSDTIVDMVEGGFDVAIR-NAELKDSNLIARKLAPDSRVLCASPEYLAKYGEPVTPDD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H+ IT L W P G+ + S ++V++ ++ C G G+ Sbjct: 183 LKDHHCITLTGL-------DTW--HFHTPTGQVSVKPDSQIRVDNGEAVRDACAHGLGLT 233 Query: 243 L---LPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + Y + LV+++ED + + ++ YP + K+ F ++ Sbjct: 234 INSTWSAYELLSQGELVKVLEDFPLVCNTAIWAVYPSSRLLAPKVSVFIEYLI 286 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151279887|gb|ABR88297.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 361 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/293 (22%), Positives = 139/293 (47%), Gaps = 18/293 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++AR G+ + AA L ++ + +++++ LE+ +G++L R R ++LT +G Sbjct: 64 ELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIY 123 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +++ + + P G LR+ T+ G+ + + EF+ YP +++Q Sbjct: 124 LGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQF 183 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +K ID+ + D AIR + + L RKL++ A+P YL+ P ++ +L Sbjct: 184 EVSDKPIDLVENGFDLAIRF-GTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADL 242 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240 +H IT + A R + R ++V S LS ++ + + G Sbjct: 243 SRHRCITH--------RQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHG 294 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + ++ + + L ++ D + PS ++ YP + + +AF +F+ Sbjct: 295 ILIRSEWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFL 347 >gi|88861384|ref|ZP_01136014.1| LysR family transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88816650|gb|EAR26475.1| LysR family transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 311 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 104/187 (55%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V + GSF A+ L L +SS+S++I+ LE +G++L R R L LT+ G +L Sbjct: 15 LYLFRRVTQLGSFQATADALQLPRSSVSKKIAQLEQHLGLRLLQRSTRQLNLTDAGKELL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +T + L T +++ KPSG+++I+++ +GQ L L + L+P+I I + Sbjct: 75 IITDSLTDLLSNTAKLTEQAQAKPSGRVKISSSTLIGQRYLLPLLPDLKRLFPEIVIDIN 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ D A+R+ + + SSL+ R++ +A+P YL++ + +L Sbjct: 135 LDDRVVDLIELGIDIALRVGQ-LPDSSLVARQIGIKSWACFASPAYLQDAAKLDKPSDLS 193 Query: 188 KHNLITF 194 H I F Sbjct: 194 AHQCIIF 200 >gi|218462975|ref|ZP_03503066.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Kim 5] Length = 298 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 129/298 (43%), Gaps = 23/298 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GS T A ++L ++Q+++S QI LE VG LF R R + LTE Sbjct: 7 FPLNALRVFEAAARLGSITKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCRE 179 ++ + ID S + D AIR L +L+ + +P + RE Sbjct: 124 AVRFQASSDIIDFSREQIDVAIRWGDG-NWPGLTLHRLMGLEFTPMLSPKLAEAAGGIRE 182 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCV 236 P ++L K +L GD+ K + + D RP + ++ ++ +S Sbjct: 183 P---RDLLKFDLFDAGDIWWKQWFEAAGVTETDLDRRPRNQLGSQAVEADAAMS------ 233 Query: 237 LGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+A+L L R+ E + + YPE +N K+KAFRN+I Sbjct: 234 -GHGVAILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNLPKIKAFRNWIL 290 >gi|161521084|ref|YP_001584511.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345134|gb|ABX18219.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] Length = 339 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 7/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + A G TLT Sbjct: 31 LNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLTA 90 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +L + +++ ++ + SG +RI +T G L L F +P Sbjct: 91 EGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHPR 150 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + L+ + ++ AD A+ L +P + + KL + YA YL + Sbjct: 151 VTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLASHPPIA 209 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H I++ D + E V R + + S+ ++ G G+ Sbjct: 210 GTDDLARHTFISYVDDLAFSSELLYLERAVPGATAGLRTTSVIAQSFAALH-----GGGL 264 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +I P LV ++ D + + + E L+ ++ A +++ Sbjct: 265 AILPCFIAAAQPALVPVLPDQVVVTRCFWLTCREDLRKLRRVTALWDYL 313 >gi|83643412|ref|YP_431847.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83631455|gb|ABC27422.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 294 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 135/287 (47%), Gaps = 12/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F +VAR G F+ A + ++++SRQ+ LE ++GI+L R +R L+E+G Sbjct: 8 DALAYFDLVARHGGFSRAEQASGKPKATLSRQVRRLEDQLGIRLINRDSRAFALSEEGRW 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 LH T ++ L T L G+LR++ + G ++ EF YP+IQ++ Sbjct: 68 LHERTRDLLGDLNETVTALTHDRAPARGRLRVSCPMMFGHMVMGRRAAEFAQAYPEIQLE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++++++D+ + D IR+ P S L+ R ++ H A + E + Sbjct: 128 VTVEDREVDLIEEGYDVVIRV-NPRPDSQLVGRCILRNVQHLIAPAGLPQPTDETAPVPA 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + + N T + I + ++ N A + R S L++ S L + G +A+LP Sbjct: 187 VARSN--TPDERILRVLDGQNERAYLLR-------SALRLPSPLMQRDAVLTGGVVAVLP 237 Query: 246 DYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V + +++ + TP V+ + + ++KAF F+ Sbjct: 238 YALVAQDLAQGTLVDWGRLPTPPVEVWALHASRRLTSARIKAFIEFL 284 >gi|241204239|ref|YP_002975335.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858129|gb|ACS55796.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 297 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 15/276 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR SFT AA +L +SQS++S + LE +GI+L R R ++LT+ G + Sbjct: 7 NDLMAFLAVAREKSFTRAAAKLGVSQSALSHVVRQLEARLGIRLLTRTTRAVSLTDAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + ++E + E KP+G +RI + ++ L+ FL PDI+++ Sbjct: 67 LFQGVGPHFDEIEAQLETITEFREKPAGNIRITASDHAINWIIWPKLQRFLPNNPDIKVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ +N DI + D +R+ + + + R AP Y P Q+ Sbjct: 127 LMRENGLSDIVTERFDGGVRMGEQVAKDMISARIGPDFPFAVVGAPSYFDGNGVPEHPQD 186 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN I T+G ED N R G+ + NSY S+ + + G G Sbjct: 187 LVRHNCINERLPTYGGFWAWEFED-NGKEIRIRVEGQLAFN----NSYQSV-EAALDGLG 240 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273 +A +P+ + + L R++E +P + Y Y Sbjct: 241 LAYVPEDVALPHIAEGRLRRVLE-AFSPHWDGYHLY 275 >gi|184157808|ref|YP_001846147.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332876496|ref|ZP_08444263.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|183209402|gb|ACC56800.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|322508123|gb|ADX03577.1| Transcriptional regulatory protein [Acinetobacter baumannii 1656-2] gi|323517697|gb|ADX92078.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735354|gb|EGJ66414.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 296 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V G+F+ AA L +S+ +++++ LE ++ L R R + LT G K Sbjct: 5 DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTSCGEK 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + E E+ + P G+L++ T + LQ + +F+ YP I+I Sbjct: 65 FYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184 L + ++ +D++ D IRL + SL K++ T + YA P Y P S++ Sbjct: 125 LFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLPNSLE 182 Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240 EL +H LI + D K + + E +C V N+ ++ C+ G Sbjct: 183 ELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP++I + L + +ED + +Y +P + K+K F +F+ Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288 >gi|157370446|ref|YP_001478435.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157322210|gb|ABV41307.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 303 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSF AA +L ++ S++S+ + LE +G+ L +R R L LTE G+ H Sbjct: 1 MAVFATVVAEGSFAGAARRLGMTPSAVSQHMRSLEKALGVPLLHRSTRRLALTEAGAAFH 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + L E G+LRIATTI +G L L L +P + ++++ Sbjct: 61 PGCEAMLFQAQQAEQRLAELRDTLVGELRIATTIGIGGRPLAEALAPLLQAHPKLTLRVL 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D++ +D+ D A+R+ + + +++I L M AAP YL P + Q+L Sbjct: 121 ADDRIVDMIEQRIDIALRVNRQLADANMIAHPLAEWPMVLCAAPRYLSQYGVPEAPQDLV 180 Query: 188 KHNLIT 193 +H I+ Sbjct: 181 QHRWIS 186 >gi|309788598|ref|ZP_07683199.1| uncharacterized HTH-type transcriptional regulator yeaT [Shigella dysenteriae 1617] gi|308923529|gb|EFP69035.1| uncharacterized HTH-type transcriptional regulator yeaT [Shigella dysenteriae 1617] Length = 307 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 142/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P + + D P G ++ ++V LS + Q Sbjct: 187 LSA---------LPCLL-----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLLEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|254449980|ref|ZP_05063417.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] gi|198264386|gb|EDY88656.1| transcriptional regulator, LysR family [Octadecabacter antarcticus 238] Length = 310 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 10/263 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ D +R F V GS + A L +S + S +IS LE + ++LF R R LT T Sbjct: 1 MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISSLEEHLNVRLFQRTTRSLTAT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG + V ++T + ++ + P G L +A + +G+ L+ + EF+ YP Sbjct: 60 EQGRAFYTGAVAVLEAVDTAEGQVAGITDNPKGSLYVAAPLGVGRRLIAPLVPEFVRDYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I I+L L ++ +D++ + D + L +P S+ I + + AAP Y+ P Sbjct: 120 LIDIRLRLTDRKVDLTTEGLDISFFLGEPADSNLRI-KPIADCDRVLVAAPRYIAERGNP 178 Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236 + L D HN + P E F W L T D P R+S + + + ++ + Sbjct: 179 VDGTALVKDGHNCLNL--RYPGAPE-FQWRLQTSDGP-QRFRVSGRYECDDGDVLTEWAL 234 Query: 237 LGSGIALLPDYIVKDNPNLVRIM 259 G GIAL P + V + N R++ Sbjct: 235 AGEGIALKPVFEVAEYLNAGRLV 257 >gi|206563006|ref|YP_002233769.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198039046|emb|CAR55009.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 319 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + + G TLT Sbjct: 11 NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + +++ ++ + SG +RI +T G L L F +P Sbjct: 71 AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ +++ AD AI L +P + ++ KL + YA YL N Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHAPI 189 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H I++ D + N L +DR + + L+ S ++ + + G G Sbjct: 190 TCTDDLAQHAFISYVDDLAFS----NELLYLDRAV-PGATAGLRTTSVIAQVFAALQGGG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ P LV ++ + + + + E L+ ++ A +++ Sbjct: 245 LAILPCFMAATQPALVPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYL 294 >gi|187930944|ref|YP_001890928.1| transcription regulator, LysR family [Francisella tularensis subsp. mediasiatica FSC147] gi|187711853|gb|ACD30150.1| transcription regulator, LysR family [Francisella tularensis subsp. mediasiatica FSC147] Length = 298 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 12 FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 72 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSLFAQNILINLIKEYSKKFSKVKIEV 130 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + +++ RK+ T A+P Y+ P +I + Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--NIVARKIATTRYVLCASPAYINKNGSPSNISD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242 L HN I + L + + P+ S + N+ + ++ CVL GIA Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVK+ N L+ +++D +Y YP+ K+K F N + Sbjct: 241 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291 >gi|170770092|ref|ZP_02904545.1| transcriptional regulator, LysR family [Escherichia albertii TW07627] gi|170121049|gb|EDS89980.1| transcriptional regulator, LysR family [Escherichia albertii TW07627] Length = 307 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 41/305 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIA---------- 176 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV-----DRPIGEPRI------SCLQVNSYLS---- 230 +H L PK + D + L + D P G ++ ++V LS Sbjct: 177 --QHGL-------PKHLTDLSALPCLVIKERDHPFGVWQLHNKDGHHAIKVTGPLSSNHG 227 Query: 231 --IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + Q+C+ G GIAL + V +N +L++++ + P+ V+ Y L + K++ Sbjct: 228 EIVHQWCLDGQGIALRSWWDVSENIASGHLLQVLPEYYQPA-NVWAVYVSRLATSAKVRI 286 Query: 286 FRNFI 290 F+ Sbjct: 287 TVEFL 291 >gi|33602709|ref|NP_890269.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33577151|emb|CAE35708.1| probable LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 306 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 DWD LR F VAR+ + AA +L + ++++R++ LE E+ LF + + G LTE Sbjct: 2 LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L ++ + T + L SG +RI T G +L +F YP Sbjct: 62 DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ + + +S AD AI + +P Q + KL + Y P YL Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L HN I + D + E +L V + ++ L+ S ++ + G + Sbjct: 181 ERADLAGHNFIGYVDEL-LFSERLRYLEDV---LPNSQV-VLRSTSVIAQYHAALQGQSL 235 Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +I +P L ++ D IT SF +Y C+ E L+ ++ A F+ Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAITRSFWMY-CH-EDLRRLKRVSALWEFM 284 >gi|299770598|ref|YP_003732624.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] gi|298700686|gb|ADI91251.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] Length = 301 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 16/262 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A ++ S++S+ IS LE +G++L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + L+ EL++S P G++RI T++ + L + F YP I+ Sbjct: 71 YEQGIHILNNLD----ELEQSVTANHMPQGRIRIHTSLSYWTHFLLPCISLFNECYPQIE 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ L ++ I++ D AIR P++SS+L+ R L + H +P Y++ P Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTQKHYVCSPAYIEKYGCPQHP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +EL H L+ + ++ WL D + I L+VN +I+Q + G G+A Sbjct: 186 EELYAHQLLD----VSYQRQNKTWLFKKDEQEITLAPTQVLRVNHGEAILQLALAGVGVA 241 Query: 243 LLPDYIVK---DNPNLVRIMED 261 L ++ V+ + LV+I+ED Sbjct: 242 QLNEFQVRKALEQKLLVKILED 263 >gi|209515971|ref|ZP_03264832.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209503629|gb|EEA03624.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 330 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 96/188 (51%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF+ AA L LS S++S + +E+ + ++LF R R + LTE G +L Sbjct: 13 ELTAFITIAEQRSFSAAARVLGLSPSALSHAMRNMESRLDVRLFNRTTRSVALTEAGEQL 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R L+ E+ + +PSG +RI+ + + L++ L +F YP+I ++ Sbjct: 73 LRRVRPALADLDDAVGEVTAARNRPSGTIRISASESSAKQLVRHVLPDFFARYPEIHVEF 132 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++D++ +DI + D +R+ + + + R + + A A+P YL P + +L Sbjct: 133 VVDSRLVDIVAEGLDAGVRVFEDVPRDMIAIRFGRDMRLGAVASPDYLARHPAPKAPHDL 192 Query: 187 DKHNLITF 194 +H I F Sbjct: 193 MQHRCIRF 200 >gi|330876172|gb|EGH10321.1| LysR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 301 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 33/301 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF VAR SF AA +L +S + +S+++ LE +G+ L +R R +++TE G + Sbjct: 7 DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNIGVVLLHRSTRQVSITEDGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ E+ +PSG LR+ ++ LG+ + L E YP + I+ Sbjct: 67 VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARYPKLDIR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + L R L + A+P Y++ PLS+ E Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGVPLSLAE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSI------MQ 233 L H+ + + DRP G ++ LQ V LS Q Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGLQGAETVKVTGSLSTNHGEIARQ 231 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289 +C+ G G+ L + V+ + R+++ + P + ++ + L ++ K++ F Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLIQ--VLPEYRQDADIWAVHTSPLMSSAKVRVTVEF 289 Query: 290 I 290 + Sbjct: 290 L 290 >gi|320325528|gb|EFW81590.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 328 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 23/293 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V SGSF+ A L LS S++SRQI LE + + L R R L +TE G + V Sbjct: 16 VFRQVVVSGSFSGAGRTLGLSPSAVSRQIDRLERILNVALVTRSTRNLFITESGQDVFNV 75 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 SE+ ++ ++ + V+P G LR+ + +G+ LL ++ EFL +YP I++ L Sbjct: 76 ASEIASATDSLMGRIEAAMVEPEGLLRVTAPVTIGKILLSSSIAEFLRVYPKIKVDLNFT 135 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI + D ++R+ ++ RKL + A + + P +++ Sbjct: 136 DNIVDIYKEKFDLSVRITS-TPPHDMVARKLFDVEYLLVATTGEV-SFEIPSHPEDISST 193 Query: 190 NLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +IT FG+ + D+++ PR L N+ +++ G+G+ +L Sbjct: 194 PMITPSDSFFGEEMTFNHTDYSYTVR-----STPR---LMANNSETLLGAIFSGTGVGVL 245 Query: 245 PDYI---VKDNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P+++ + ++ L I+ + +TPS + +P + + K +A+ ++ Sbjct: 246 PNFLAIPLIESGQLRSILPEWQINNVTPSSVFFLSHPSKMI-SAKARAYIEYL 297 >gi|295701042|ref|YP_003608935.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440255|gb|ADG19424.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 324 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 1/183 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A GSF AA L +S + S + LE +G+++F+R R L+LT++G +L Sbjct: 7 ISVFVRTATLGSFRRAAVDLGISPQAASHAVMQLEKSLGVQVFHRTTRKLSLTDEGQRLL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L + + + S + +G L ++ LG+ +L + EF LYPD+QI + Sbjct: 67 QSVEPALAMLSSAIDDARRSKEEVAGPLCVSAPTALGRTVLLPLILEFAALYPDVQIDVR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D+ D AD R P S I R+L+ I + A+P YL+ P ++ +LD Sbjct: 127 FDDHFTDLVSDRADVGFRGGSP-PSGGAIARRLLPIQLIVCASPAYLERYGAPKTVNDLD 185 Query: 188 KHN 190 H Sbjct: 186 AHR 188 >gi|308188291|ref|YP_003932422.1| HTH-type transcriptional regulator ltrA [Pantoea vagans C9-1] gi|308058801|gb|ADO10973.1| Probable HTH-type transcriptional regulator ltrA [Pantoea vagans C9-1] Length = 305 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 122/273 (44%), Gaps = 11/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QLHLS SSIS+ ++ LE + +KL R R + LTE G + Sbjct: 7 MSVFARVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGKIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + +L + P G LRI ++ + QN+L G + L YP + + L+ Sbjct: 67 QGCRRMLAEATQVHEQLYAFNNTPIGVLRIGSSSTMAQNVLAGMTSDMLREYPGLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ ++ SSL R+L + M AA YL P ++D Sbjct: 127 TGVPAPDLIADGLDLVIRV-GALKDSSLFSRRLGAMPMVVCAAKSYLAQHGTPEKPGDID 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + E V R + R N L+++++ G+GIA +P Sbjct: 186 NFSWLEYSVRPDNNFELIAPEGLVTRLAPQGRFVT---NDSLTLIRWLKSGNGIAYVPMM 242 Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPE 275 V D I D++ P + VY Y E Sbjct: 243 WVIDEITAGEI--DILFPHYQSDPRPVYALYTE 273 >gi|261251033|ref|ZP_05943607.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] gi|260937906|gb|EEX93894.1| transcriptional regulator LysR family [Vibrio orientalis CIP 102891] Length = 299 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 8/283 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVEMGSFSKVAEANSLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LTQGAKTVKQATQEAMDAVSGFGENVSGHIKMSVPSISGDLILADAVAEFCNLHPGLSVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +P Q+ Sbjct: 124 MSLDNRFVDLVEGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNSKPNDPQD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L HN + + E W ++ ++S ++ ++ + + G G+A + Sbjct: 183 LTLHNCLQYAYQTTGASE---WEFKAEQGNYIVKVSGSFSTDNATALRKAALGGHGVAYV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 P +V N LV + + + +Y YP + K+K Sbjct: 240 PRCLVYHDIRNGQLVDLFPEQVGKRLGIYAVYPFTRQPPNKVK 282 >gi|254197952|ref|ZP_04904374.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] gi|169654693|gb|EDS87386.1| transcriptional regulator, LysR family [Burkholderia pseudomallei S13] Length = 306 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + + Sbjct: 11 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +Q + + + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGVPSKLADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|325168294|ref|YP_004280084.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064017|gb|ADY67706.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 312 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 132/283 (46%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF + GSF A+ + +S +++ + LE +G L +R R +LT+ G + Sbjct: 19 MAVFVKASDLGSFAATAKAMEMSPQMVAKHVVFLEDRLGTALLHRTTRRQSLTDVGRVFY 78 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +E + + +P G LR+ + G L + +L YPD++I L Sbjct: 79 DRCKQLLSDVEAAESVALDMRSQPKGVLRVNAAVTFGAFSLAPFVTRYLDRYPDMRIDLT 138 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D + + +R+ + ++ SLI L + A A+P YL P +L+ Sbjct: 139 LNDRFVDPLEEGFEVMVRIGE-VEDPSLIALPLAPYRLIACASPDYLIRRGTPRIPLDLE 197 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + +GD W T E RIS ++ N + +++ + G GI L P+ Sbjct: 198 QHDCLAYGD--GPSSTPCRWQFTRSGKSEEVRISGRIRSNDWKALLHASIAGYGITLGPE 255 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ LV+++ D PS ++ YP + T K+++F Sbjct: 256 SVLNAEITAGRLVQVLPDHEGPSRPMHVIYPVGRRPTAKVRSF 298 >gi|296159346|ref|ZP_06842171.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295890330|gb|EFG70123.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 297 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 17/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++RVF +A SFT A++ L + +++++ + +E +G +L R R + LT G Sbjct: 4 FEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTHDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + +E + E S++ P G LR+ L ++ + L FL +P+I++ Sbjct: 64 AYYRRCVRLIADME--EAEGSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SS++ R++ + A+P YL EP Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLAAYGEPADPS 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H + + G +P +FN R + S + V + G Sbjct: 181 ALSTHRAVNYVSSATGKAVPL---EFN---VAGREVAMVLPSAVSVTGTELYTGSALAGL 234 Query: 240 GIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P Y V R I+ D P V YP+ + + +++ F ++ Sbjct: 235 GIVQVPQYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWL 288 >gi|241204988|ref|YP_002976084.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858878|gb|ACS56545.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 297 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 6/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VAR+ SFT AA +L +SQS++S I GLE +G++L R R + TE G + Sbjct: 7 NDLIAFLAVARAQSFTKAAGKLGVSQSALSHTIRGLEERLGLRLLTRTTRSVAPTEAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++E+ L KP+G +RI +L L++ L YPDI ++ Sbjct: 67 LLVSIGPRLDEIESELAALSAFREKPAGTIRINAGEHAADAVLWPALEKLLPDYPDINVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I+D DI + D +RL + + + R + M +P Y +PL+ QE Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFGTRPKPLTPQE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244 L HN I +P + W D R+ V + +++ VL G G+A + Sbjct: 187 LTDHNCINL--RLPTYGSVYAWEFEKDGRELRVRVEGQLVFNNIALRLNAVLAGLGLAYM 244 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 P+ +V + LVR++ED P + YP Sbjct: 245 PENLVDAHLADGRLVRVLEDWCLPFSGYHLYYP 277 >gi|145642219|ref|ZP_01797786.1| lysR-family transcriptional regulator [Haemophilus influenzae R3021] gi|260583197|ref|ZP_05850976.1| transcriptional regulator [Haemophilus influenzae NT127] gi|145273079|gb|EDK12958.1| lysR-family transcriptional regulator [Haemophilus influenzae 22.4-21] gi|260093754|gb|EEW77663.1| transcriptional regulator [Haemophilus influenzae NT127] gi|309973858|gb|ADO97059.1| Transcriptional regulator CrgA [Haemophilus influenzae R2846] Length = 295 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 12/269 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L VF V +GSF+ AA+QL ++ S++SR + LE ++G+ L R R L LT Sbjct: 1 MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ + + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ+ L+ I++ D A+R + + S L R L H A+P YL P Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S + L H + F + P + + L P +IS S I++ C+ G Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWEVLDAQGNPY---KISPYFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFT 268 GIA L D++V ++ I E + P T Sbjct: 235 GIACLSDFLVDND-----IAEGKLIPLLT 258 >gi|254038228|ref|ZP_04872286.1| transcriptional activator TtdR [Escherichia sp. 1_1_43] gi|226839852|gb|EEH71873.1| transcriptional activator TtdR [Escherichia sp. 1_1_43] Length = 310 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEVVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|146338022|ref|YP_001203070.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium sp. ORS278] gi|146190828|emb|CAL74833.1| Transcriptional Regulator, LysR family; putative Glycine cleavage system transcriptional activator (Gcv operon activator) [Bradyrhizobium sp. ORS278] Length = 306 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 129/290 (44%), Gaps = 12/290 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR SFT AA +L+++Q++IS QI LE E+GI+LF R R L LT Q Sbjct: 8 NGLRAFEAAARHLSFTRAASELNVTQTAISHQIKRLEDELGIRLFLRQNRSLALTPQARD 67 Query: 66 LHRVTSEVYHKLE-TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + L T+ +++ + K L ++T L L L F +P I + Sbjct: 68 YLPLVRAAFDDLRLATERLVRKDNAK---VLTVSTIASLAAKWLLPRLTAFQEAHPTIDV 124 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +D D D AIR + ++ L+ + +P L+ + S + Sbjct: 125 RITTSTGLVDFRKDDVDAAIRYGRG-HWPAVRAEWLMADELFPVCSPALLQGTKPLRSPE 183 Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H L+ +D+ WL P+ R S L + L +Q + G G+A+ Sbjct: 184 DLAHHTLLQASG---GYDDDWRLWLTAAGLPVEMSRQSRLSFDLSLMTVQAAIDGLGVAI 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V+D+ LV E ++ Y PEA + KLKAFR ++ Sbjct: 241 GRTAYVQDDIAKGRLVVPFEMMLPSDAGFYLVTPEARTDPPKLKAFRQWL 290 >gi|91777440|ref|YP_552648.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690100|gb|ABE33298.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 313 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 127/291 (43%), Gaps = 16/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF GSF AA + LS + + +S LE E+ +L +R R L+LT+ G + Sbjct: 7 LGVFVAAVEEGSFAGAARRFGLSAAMAGKHVSALEAELNARLLHRTTRRLSLTDTGQTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + E +S G LRIA + G L + ++ +P + ++++ Sbjct: 67 ERSKRILEAFDEAKREASDSQGTARGVLRIAAPVTFGAMHLGEVVARYMEDHPHVNVEVL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D AIR+ K ++ L+ R+L M A+P YLK P +L Sbjct: 127 LGDRYVDLIDAGVDVAIRIGK-LEDPGLVTRRLAPCRMVVCASPAYLKRHGTPRKPDDLL 185 Query: 188 KHNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 + + F + + + N +D P C + N+ ++ + G+GI Sbjct: 186 RAQRLAFSEAVSAGDWTLHDRKNRAHVIDGP-------CRMTANNTQMLLASAIAGAGIV 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + LV ++ T+ YP A + K++ F +++ Sbjct: 239 YGPTFVFGAHIRSGELVALLPAYRAADLTIQAVYPSARRIPLKVRRFVDYL 289 >gi|77362280|ref|YP_341854.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76877191|emb|CAI89408.1| putative transcriptional regulator with periplasmic binding domain (LysR family, YafC, YeaT) [Pseudoalteromonas haloplanktis TAC125] Length = 312 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 99/180 (55%), Gaps = 1/180 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L + V GSF AAE ++ +S IS+QIS LE E+G++L R R +LT G+++ Sbjct: 6 RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ L T + +P G L+I + +G+ LQ + +F +P ++++L Sbjct: 66 IKKAADLRELLGETLRMAENYHQEPRGLLKITASTIIGRRYLQPVINDFQKRFPQVEVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +DI + D A R+ +P + SSLI RK+ + A P ++K P ++ +L Sbjct: 126 RLDDRLVDIVSEGFDLAFRIGEP-KDSSLIARKIARNRLLILATPEFVKTYGMPKTMSDL 184 >gi|119776681|ref|YP_929421.1| LyrR family transcriptional regulator [Shewanella amazonensis SB2B] gi|119769181|gb|ABM01752.1| transcriptional regulator, LysR family [Shewanella amazonensis SB2B] Length = 299 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 12/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GS T AAE L +S+S +S+ + LE +G +L +R R ++LTE G + Sbjct: 8 RMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISLTEDGREF 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 E+ + + + G LR+ + LG++ L + +F YP+I++ L Sbjct: 68 FHYCGELLQLARQAEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRYPNIRLTL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L++ +++ D AI+ P + S KL + A+P Y+ +PL L Sbjct: 128 MLEDSKLNLLEHQIDVAIQAGWP-EDSEFRAIKLGSFDEQLVASPEYVAAHGKPLHPDNL 186 Query: 187 DKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H + +PK N R P ISC NS ++ + G G+A+LP Sbjct: 187 QHHQWLAHASGHLPKTWTLHNGQGEEFRVRITPFISC---NSTNGLIAMALQGLGVAILP 243 Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 D +V N +L +++ P + VY +P +++ F +F+ Sbjct: 244 DNLV--NEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFL 291 >gi|330820088|ref|YP_004348950.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327372083|gb|AEA63438.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 300 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 8/255 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F + GSF+ + + Q ++S+QI+ LE +G +L R +R + +T+ G Sbjct: 5 DAIRLFVRLVERGSFSAVGREQGIGQPAVSKQIAALERHLGAQLLLRTSRRVAVTDAGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + + + E P G +R+ T G+ + L EF +P++ ++ Sbjct: 65 FYESARQLVEDFDAVESSVGERQQSPRGLVRLNTAPGHGRLWITPRLPEFFARHPEVTVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +++D+ D AIR K + SSLI R+L + A+ YL P + + Sbjct: 125 LSVSERNVDLVGQGIDLAIRHGK-LVDSSLIARRLGETALVLAASRDYLAAHGTPARLDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIAL 243 LD H I F + E + W V R PR S L ++ + V G GI+ Sbjct: 184 LDAHRCIVFS----RDREPYPWALRVGREALSYRPRGSLLTGDAE-HVRAAVVNGLGISQ 238 Query: 244 LPDYIVKDNPNLVRI 258 P ++++D R+ Sbjct: 239 APLWLLEDEIRAGRV 253 >gi|255591949|ref|XP_002535633.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] gi|223522451|gb|EEF26751.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] Length = 289 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 18/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF + SGS T A +L ++ +S+ ++ LE + +L R +R ++LTE G H Sbjct: 3 LRVFCEIVESGSLTAAGNRLGMAPPMVSKHLARLERSLAARLLNRTSRSMSLTEAGRLFH 62 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + ++S P G+L+I+ + + + E+ P++++ + Sbjct: 63 EQAMQALEMLDAGVASVSQASGPPRGELKISAPVWIATPRFAALIAEYQQRCPEVRLDVH 122 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-----KNCREPLS 182 L+N+ +DI + D A+R++ S SLI RKL + + A P +L K+ Sbjct: 123 LENRMVDIVAEGFDLALRMKNDA-SQSLISRKLCEVQFYCVATPAFLARSATKSEAGAAQ 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + N + FG PK +LA D+P+ ++ N + G G A Sbjct: 182 LPAMIMPNNLQFGR--PKMPAQGMFLAP-DQPV------AMRSNDTTLSYHAVLAGIGAA 232 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++V D+ LV E + ++ YP KL++F +F+ Sbjct: 233 FLPGWLVADDLASGRLVHSGEADKSYQGQLFAVYPSRRHQALKLRSFIDFL 283 >gi|221210743|ref|ZP_03583723.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221169699|gb|EEE02166.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 293 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 126/293 (43%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 8 NALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + L VK L I+TT L L +F +PDI ++ Sbjct: 68 YFSDVQRALHAIADATDRL----VKRRATLTISTTPSFASKWLIPRLAQFTDAHPDIDVR 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIR KP L L + + A +P L P S + Sbjct: 124 VIADQQLATFRHDGVDLAIRYGKPPFGKHLAAHALFPLDVCAVCSPALLA---APASPRA 180 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P ++A + P+ L+ N + + G GIAL Sbjct: 181 LAGHVLLHDAHDLWPA------FIAALPEPVDVDPHKGLRFNQTSLAIDAAIAGQGIALA 234 Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 D +V+ + R+ + D P S Y YP ++ + R+++ A Sbjct: 235 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDTIAVMRDWMIGAA 287 >gi|115358811|ref|YP_775949.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284099|gb|ABI89615.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 301 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 29/303 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D L +F VA SFT AAE L + + +S I LE +VG+ L +R R + LTE G Sbjct: 3 NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ +++ Q + + G+LR+ +L ++++ L + + +P+++ Sbjct: 63 RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +D+ + DC IRL PI +LI R L + M A+P YL P ++ Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPITDDTLIARPLGKLRMTNAASPGYLARYGIPHTL 181 Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIM 232 +L H +T G P W + P G+ P S +QVNS + Sbjct: 182 DDLRTQGHRMVHYTLTLGARHP------GW----EYPNGDGYASLPLPSAMQVNSVQTYH 231 Query: 233 QYCVLG-----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + G +G + L +I ++ LV ++ D+ + +++AF Sbjct: 232 AAGLAGIGLIQAGYSALAHHI--ESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFM 289 Query: 288 NFI 290 ++I Sbjct: 290 DWI 292 >gi|325168457|ref|YP_004280247.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064180|gb|ADY67869.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 296 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 128/287 (44%), Gaps = 24/287 (8%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR G F AA ++++SR+++ LE + I+LF R AR L LTE+G L T Sbjct: 9 FNLVARHGGFGKAARASGRPKATLSRRVTELEAALQIRLFDRGARALKLTEEGRALSERT 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + +L+ T + + KP G+LR++ + L Q + F L YPD+++++ ++ Sbjct: 69 AVLLTELDETAAAIASGAEKPRGRLRVSAPLLLSQTAMGKIAAGFALKYPDVRLEITTED 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D IR+ P SL+ R + + A P + Sbjct: 129 RAVDMIEEGYDLVIRV-NPAPDESLVGRAFLHDRLVVVAPPDIV---------------- 171 Query: 191 LITFGDLIPKCMEDF----NWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 L + G +P + W + + RI L ++S + + G G A LP Sbjct: 172 LPSLGQPVPGVVRGGAGPETWNVMTTKGPAKIRIDPVLTLSSLIMVRDAVRAGVGAARLP 231 Query: 246 DYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V + +M DV ++ YP + ++ AF +F+ Sbjct: 232 ISLVSHDLAAGTLMHWGDVENSEIALWALYPSRRLLSARVSAFLDFL 278 >gi|318605989|emb|CBY27487.1| transcriptional regulator, LysR family [Yersinia enterocolitica subsp. palearctica Y11] Length = 310 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 12/298 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++ +F V +GSF+ A QL +S S+ISR +S LE + +L R R L L+E G + Sbjct: 11 SEMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEE 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + + + S +P G +R++ +G+ ++ ++ EFL Y I +Q Sbjct: 71 VFKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDVQ 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 LILD++ +D + D IR+ ++ R+L+ I A P YL PL + Sbjct: 131 LILDDRYVDFIDENVDLVIRITN-HPPPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPHD 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALL 244 L +H+ I G+ F + R + L +++Q+ +GS L Sbjct: 190 LAQHSCIYLGETPGDARWKFRQGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGS----L 245 Query: 245 PDYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 P + + LV+++ + + + S ++ YP KL+ F ++I + RD Sbjct: 246 PYFTARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 303 >gi|295700209|ref|YP_003608102.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439422|gb|ADG18591.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 341 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 4/242 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V GSF AA +L + +S++SR + LE ++ +L R R + LT +G ++ Sbjct: 39 FLAVVSEGSFAKAASRLGIGRSAVSRNVQKLEAQIDARLLLRTTRSMALTREGELFYQNC 98 Query: 71 SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ +++E P G+LRI +T G+ ++ L F YPDI + +L Sbjct: 99 NPGVERIVRALADMRELRQGPPRGQLRICSTTGFGRRIVAPLLSGFYTAYPDIALDFMLK 158 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + I+ + D D A R K + S +I ++L + M A+P Y + P S+++L H Sbjct: 159 DGPIEFTTDRIDVAFRDGK-LDDSQVIAKQLFPMQMIVCASPEYARAHGLPRSVEDLGMH 217 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I + + E + R + + L N ++Q + G GIA L Y V Sbjct: 218 RCINLRLVSGRIAEWEFKVGGASRKVVPKAVHVL--NDADLVLQAVLAGHGIAQLAAYQV 275 Query: 250 KD 251 + Sbjct: 276 SE 277 >gi|238754531|ref|ZP_04615885.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia ruckeri ATCC 29473] gi|238707162|gb|EEP99525.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia ruckeri ATCC 29473] Length = 302 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 13/296 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68 VF + GS AA+ + +S++ ++R ++ +E G +L +R R L+LT G + L R Sbjct: 9 VFVTIVDRGSMIAAADAMGMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGETTLER 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + ++ E+ + G LRI+ + L Q L + FLL YP + I L + Sbjct: 69 CRKMLAFAQDMDLVDGLEND-ELRGLLRISCSQSLAQTALAVAVTAFLLRYPQVAIDLQM 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +N+ I++ + D AIR+ + +LI R L T H A+P YLKN P + Q+L Sbjct: 128 NNRAINLVEERIDLAIRITNELD-PNLIARPLSTCHSVVCASPSYLKNKGMPQNPQDLAL 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + F+ +S N + ++ + G+GIAL P Y Sbjct: 187 HNCLTY-SYFGKSLWHFDHHGVKSSVAVSGNLSA---NESVVLLSGALEGAGIALQPRYS 242 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 + LV+++ D + +Y Y + L+ +++ F W+ Sbjct: 243 AMPYLISGELVQLLPDFHPQAMGIYGIYTSRRQMPATLRTLLDYLIEWFATNEQWR 298 >gi|104779958|ref|YP_606456.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95108945|emb|CAK13641.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 298 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 13/251 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L+VF V GS + AAEQ+ + S++SR +S LE ++G L R R + LTE+G Sbjct: 6 EELQVFVAVIDCGSISAAAEQIGQTPSAVSRTLSRLEDKLGTTLVNRTTRRMDLTEEGRF 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +++ + L PSG+LRI + + + EF YP I+++ Sbjct: 66 FLERARQILEQIDDMEERLSMHHQTPSGRLRINAAAPFMLHAILPWIGEFRQQYPGIELE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L D+ ID+ D AIR+ + + SSL R L + A+P YL P ++++ Sbjct: 126 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPEYLARNGTPQTVED 184 Query: 186 LDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 LD H L+ F L E N W A DR P+ L +S ++ Q + G GI Sbjct: 185 LDDHCLLGFSTL-----ESLNQWPLRHAQGDRWAIRPQ---LLASSGETLRQLAIAGEGI 236 Query: 242 ALLPDYIVKDN 252 L ++ ++ Sbjct: 237 VSLSHFMTHED 247 >gi|152985212|ref|YP_001349266.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960370|gb|ABR82395.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7] Length = 309 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 7/292 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +G+F AA QL +++S ++ +I LE + LF+R R + L+E G + Sbjct: 7 IEAFVRVAETGNFAKAAVQLGVTRSVVTHRIQQLEHFINAPLFHRSTRHVRLSEVGETYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + +++ KP+GKLR+ + L EF LYPDI++ +I Sbjct: 67 KECADMVAGFNSLTEQMRNLRAKPTGKLRVQMLPGFAIDHFGPLLAEFTALYPDIEVDVI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ D + D A ++ P Q+ +LI+RKL ++ A+P YL+ P +L Sbjct: 127 VNDRLTDPIEEGFDIAFQMFPP-QAETLIERKLFSVRRLFLASPEYLQRHPAPQRPGDLL 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + + + F D + ++ NS + Y + G+ + LP Sbjct: 186 EHRIALYEGYPSRNRWQFQ---HGDETVELSLAGQVRSNSVHLLRDYALAGTALVCLPTL 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + + L+ ++ D SF +P + K++ +F+ + D Sbjct: 243 VAHADLASGRLLPLLVDYPLSSFNFSAVFPATQRRALKVRTLIDFLVERISD 294 >gi|71280276|ref|YP_271335.1| LysR family substrate binding transcriptional regulator [Colwellia psychrerythraea 34H] gi|71146016|gb|AAZ26489.1| substrate-binding transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 300 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 139/283 (49%), Gaps = 10/283 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F ++ + SF AA+ +S +++S++IS LE +GI+L YR R L+LTE G L Sbjct: 6 ELALFSLIVEAKSFNKAAQLAEISPAALSKKISKLEKNLGIQLLYRTTRRLSLTEAGEIL 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ ++ + S SG +++ G+ +L + EF L+P + +++ Sbjct: 66 YSHSKDINKQVNDAVSAVSSFSEGLSGTIKMTVPTISGELILAQAVAEFCQLHPKLSVEM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L+N+ +D+ + D AIR + SSLI + L+ + AP Y++ P + QEL Sbjct: 126 RLENEFVDLIKEGQDLAIR-TGVLSDSSLIAKPLLQSNWIVCCAPSYIEKHGTPQTPQEL 184 Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +HN + T+ D K D+ + + D N+ ++ + + G GI + Sbjct: 185 SRHNCMAYTYQD---KGAHDW-YFSQSDEAYYVKISGNFATNNSQALRKAALAGYGIVYV 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 P V D+ +LV+++ + +Y YP + K++ Sbjct: 241 PRCSVYDDMQRGDLVQLLPEFHGRQLGIYAVYPYTKHQSQKVR 283 >gi|251789949|ref|YP_003004670.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247538570|gb|ACT07191.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 302 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 133/295 (45%), Gaps = 19/295 (6%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +VF + GS T AA+ L +S++ ++R ++ +E +L +R R L+LT +G + + Sbjct: 8 QVFVAITEQGSLTGAADALDMSRAMVTRYLAEMERWADARLLHRSTRQLSLTTEGDTVLQ 67 Query: 69 VTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E V KL+ E E P+G +R+ + L Q L + +L YP + Sbjct: 68 YCRELLAVSQKLDRPARERME----PAGLMRLTCSPSLAQTTLVEAITAYLRRYPKTAVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + + +++ + D AIR+ + S LI R+L AAP YL P ++E Sbjct: 124 LQVASHTLNLIEERIDLAIRITSQLD-SGLIARRLGGCPSVVCAAPSYLAAQGTPQRVEE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+ +T+ K + F I P N L++++ + G+GI+L P Sbjct: 183 LAVHDCLTYS-FFGKSLWQF---IRKGETIAVPVSGSFSANDSLTLLEAALNGAGISLQP 238 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 Y V D + L+ + +V +Y Y + + L+A +F+ DW Sbjct: 239 VYSVTDLIASKRLIALFPEVQPQELDIYAVYHSRERMSPALRALVDFLA----DW 289 >gi|162146669|ref|YP_001601128.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209543338|ref|YP_002275567.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785244|emb|CAP54790.1| putative transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] gi|209531015|gb|ACI50952.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 308 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 1/185 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + +F V +GSF AE+L +S+ ++S+ IS LE +G L +R +R +LTE G Sbjct: 6 DLEAWAIFAKVVETGSFARTAEELQISKPTVSKAISRLEHRLGSPLLHRTSRQFSLTETG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + E + E +E +V P G +R+ + G L L +F+ YPDI Sbjct: 66 RGALERATRILTDGEMAEAEAREQTVHPRGLIRMTAPMTFGIAHLAPVLPDFMASYPDID 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I + ++ +D+ D A+R+ + SSL R+L T+ + A+P L +P Sbjct: 126 ITIGFSDQIVDLVGGGYDLAVRIAS-LSDSSLRARRLCTVRLLMVASPGLLARVGQPTHP 184 Query: 184 QELDK 188 ++L++ Sbjct: 185 RDLEQ 189 >gi|170720657|ref|YP_001748345.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169758660|gb|ACA71976.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 318 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 117/254 (46%), Gaps = 16/254 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F V +GSF+ AA + L+ S+++R+I LE+ VG +LF R + T G+ Sbjct: 8 DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDSLESAVGSRLFTRSTHAVRATPAGNA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + E S P G +RI G+ L + +FL+ YP + + Sbjct: 68 FAERARRIIEELRLARAEAVSLSSAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVH 127 Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L + +D+ + D +R P+ + L+ L + A A+P YL + P Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRVACASPAYLASRGIPAC 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237 EL H+ + + L P F W VD G+ R+ + N+ +++ + Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFNVD---GQSRLYRPSRMRMAANNAETLLFGALA 239 Query: 238 GSGIALLPDYIVKD 251 G G+A LP +++ D Sbjct: 240 GLGVAHLPTWLISD 253 >gi|114569738|ref|YP_756418.1| LysR family transcriptional regulator [Maricaulis maris MCS10] gi|114340200|gb|ABI65480.1| transcriptional regulator, LysR family [Maricaulis maris MCS10] Length = 301 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 17/294 (5%) Query: 6 DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ +V + SGSF+ A+ L + ++ISRQ++ LE +G KL R R L LT+ Sbjct: 2 DRLKAMSIVVQVVDSGSFSGASRALGIPLATISRQVTELEAHLGTKLLTRTTRKLALTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + ++ T+ P G+L + + G+ L+ +++FL+ YP I Sbjct: 62 GTAYLAAARRILDDIDETERAAAGEYHSPRGELIMTAPVAFGRLLVLPVIRDFLVAYPRI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+L ++++ + ++ D A+R+ P+ SS++ K+ +I A+P L +P S Sbjct: 122 DVRLVLSDRNLHLMDEHIDMAVRI-GPLPDSSMVATKVGSIRTVVVASPALLAAHGKPQS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLG 238 ++L + F L P W T P G+ S L V+S + + G Sbjct: 181 PEDLSDLPGVHFDILSPAG----RW--TFTGPGGQTHDSAPRPRLTVSSADAAVWSACDG 234 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G+ + Y D N +L ++E+ V+ + KL++F +F Sbjct: 235 VGVTRVLSYQCADAVKNGSLHVLLEEFEPAPLPVHLVHAGRGVQPAKLRSFLDF 288 >gi|72383942|ref|YP_293296.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gi|72123285|gb|AAZ65439.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] Length = 289 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 125/272 (45%), Gaps = 15/272 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +W +R+F +AR+G+ AA + +Q ++ R++ LE VG LF+R + G LT+ Sbjct: 5 GLEWSDVRIFLAIARAGTLGGAARVIGQTQPTMGRRLRALEEAVGQALFHRTSDGFVLTD 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +GS + + + L +G LR+ ++ G ++L FL +PD Sbjct: 65 EGSAVLVYAERMEEEALGLSRTLAGQGNALTGSLRVTSSDWFGMHVLTPVFARFLRQHPD 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++L+ D++ ++ AD A R+ P + +IQRKL +HM+ + L R+ + Sbjct: 125 VSLELVTDSRQYSLARREADLAFRI-MPFEEPDVIQRKL--MHMN-----YALYGHRDLV 176 Query: 182 SIQELDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + + D LI+ D + D W V R + RI + N+ + C G Sbjct: 177 APRAGDGEGVALISM-DTAFGTLPDVEW---VGRMLPRARI-VYRSNNRGVQARMCAEGG 231 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271 G A+LP + +L RI P V+F Sbjct: 232 GFAVLPCALGDATRDLRRIDLGEAPPGRDVWF 263 >gi|160898776|ref|YP_001564358.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364360|gb|ABX35973.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 312 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 22/258 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D++ VF V SF AA QL L+ S++SR + LE G++L R R L+LTE Sbjct: 5 AMPLDEMLVFARVVEHQSFAGAARQLGLTTSAVSRSVGRLEAHFGLRLLQRTTRSLSLTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+++H+ + + Q + +P G L+I+ LG L L F +P+ Sbjct: 65 AGAEIHQACLRLVADAQAVQALAGQLRQQPRGLLKISAPAVLGDIWLSPLLPGFCARWPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +Q+Q+ + ++ +D+ + D +R+ P Q + L+ R L TI A P YL + Sbjct: 125 VQVQVDMTDRMVDLVAEGLDLGLRISVPGQIAPGLVARPLKTIRYVLVATPGYLARHAQI 184 Query: 181 LSIQELDKHNLITFG-----------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229 +L H I+ G L P L V+ PI + S L Sbjct: 185 TEPGQLLAHPFISLGYGQFQNEVELRPLHPAAAPATRLL--VNTPI--------TIASSL 234 Query: 230 SIMQYCVLGSGIALLPDY 247 I+ G GI ++ D+ Sbjct: 235 GIIHALQQGPGIGVVADF 252 >gi|34496756|ref|NP_900971.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34102611|gb|AAQ58976.1| probable transcriptional regulator, Lys R family [Chromobacterium violaceum ATCC 12472] Length = 305 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 14/264 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FDW+ +R F + R+G AA Q+ + ++++R I+ LE +G LF + A G +LT Sbjct: 2 FDWNDVRFFLALQRNGKLLGAARQMGTTHATVARHIAALEKVLGQPLFVQQADGYSLTAA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLL 118 G +L + LE T ++ +S K SG +R+ LG L ++ + Sbjct: 62 GRQL----LPLAESLENTASQMLDSGSKGHAEVSGVVRLGAPEGLGALFLARHMPALMAR 117 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP+++I L+ + + ++ D AI L +P Q++ ++ RKL + YA YL Sbjct: 118 YPELEIDLVAVPRFVSVTSREVDIAIALERP-QANMVVTRKLTDYCLGLYATQAYLAAHP 176 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++L+ H ++ + D + E P P L+ S ++ + + Sbjct: 177 PIREREDLNGHAILAYVDDLLFTRELMYHHGLCRHP-SMP----LRSTSVVAQREAALAD 231 Query: 239 SGIALLPDYIVKDNPNLVRIMEDV 262 GIA+LP Y D+P L +I+ ++ Sbjct: 232 GGIAVLPYYTTYDDPRLTQILPEL 255 >gi|227327282|ref|ZP_03831306.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 292 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 14/267 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +GSF+ AA L++ Q ++SR ++ LE +G++L R R L LT +G + + Sbjct: 4 FKRTVETGSFSAAARDLNMGQPNVSRYVAALEEHLGVRLLQRTTRQLVLTPEGERYYADV 63 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S + + ++ L + + +P+G LR+A + L + FL YP + + L L + Sbjct: 64 SRILDAVAESESSLSDET-EPTGLLRVACPTAMAHAFLMPQIPAFLSRYPGLSLDLQLSD 122 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKNCREPLSIQELDKH 189 + +D+ + A+ AIR+ P S S ++ + + + Y A YL P + ++L H Sbjct: 123 RFVDLVEEGAELAIRIGHP--SDSALRARRIGLFTRVYVASVDYLNRRGIPQTPEDLRDH 180 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + I + L +++ T G +VNS ++ + + G GIA P ++ Sbjct: 181 DCILYSLL--NTGNTWHFRDTEINVSGR-----FRVNSPQAVQEAVIAGLGIASGPKWLY 233 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273 KD + L +++ D P + F Y Sbjct: 234 KDGLQSGRLCQVLCDYEAPPVPIQFLY 260 >gi|167644762|ref|YP_001682425.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167347192|gb|ABZ69927.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 297 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 9/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + V +G A +L S ++++R ++ LE +G +L R R L TE G Sbjct: 5 DELALLVAVIDAGGLAAAGRKLRRSPAAMTRALAALEERMGARLIERTTRRLAPTEAGRD 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + ET +V+ G LRI G L + +FL +PD+Q Sbjct: 65 LAERARRLLADYETALRAPAPDAVR--GTLRITGPTVFGGRHLTPVVSDFLAQHPDVQAD 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ A+R+ P+ SSL+ RKL + AAP YL PL + Sbjct: 123 LTLHDRNLDLIEGELHVALRI-GPLADSSLLVRKLGEVRRLVVAAPDYLTRRGTPLEPGD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H++I + P F V EPR L+VN+ + + + G G+ + Sbjct: 182 LTDHDVILTTVVSPTPEWRFEAQGRVRAVRLEPR---LRVNNVEAALSAILAGRGVGRVL 238 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y V ++ LVR++ D P+ V ++AF +F Sbjct: 239 SYQVAEDLAAGRLVRLLPDFEPPAIPVQLLTAGGRFMPPLVRAFLDF 285 >gi|323492186|ref|ZP_08097344.1| LyrR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323313499|gb|EGA66605.1| LyrR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 296 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 17/276 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF V + SFT AAEQL + ++ +S+ ++ LE E+ +L +R R L+LTE G+ Sbjct: 5 DDMMVFTRVVETQSFTKAAEQLGIGKARVSQIVTKLEQELNTRLIHRTTRSLSLTETGAH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + Q+ S +P+G +R++T + + + +FL YP IQ++ Sbjct: 65 YYEKCQMIQELATEANNQAQKFSSEPNGMIRVSTPVGIAAYV--DLFSQFLAKYPQIQLE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ + ++ D AIR ++ SSL ++ A+P YL+ E S Q+ Sbjct: 123 IVESDSYSNLIESRCDIAIRASSDLEDSSLYATRIGQFEDILCASPQYLQRFEELQSAQD 182 Query: 186 L-----DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H+++ GD K +E + V R + R+ NS + + G Sbjct: 183 LLTLDWISHDIV-HGD---KVLELTSSQGEVVRLKKKARVRVRTTNSLRGFLLNHI---G 235 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 +++P++ VKD + LVRI+ DV + + +Y Y Sbjct: 236 FSVVPEFAVKDELASRELVRILPDVHSVTIPLYAVY 271 >gi|222109548|ref|YP_002551812.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221728992|gb|ACM31812.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 312 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 28/289 (9%) Query: 6 DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F VA GS T AA+ ++ + + R++ LE +G+KL R R +TLT + Sbjct: 2 DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRITLTHE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + VK +G LR+ G+ + + F L+P++ Sbjct: 62 GSAFLEDCQRLLSDVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFHDLHPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L ++ +D++ + DCA+R+ + SSL+ ++ A P YL+ P Sbjct: 122 TLSLNLSDRVVDLAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPTH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-------------RPIGEPRISCLQVNSYL 229 EL +H+ +T L + W V +P G S QV Sbjct: 181 PGELAQHDCLT---LSSDASQTRGWAFRVPVAGGGGATEVVHFKPGGPLDCSDGQV---- 233 Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + +C+ G GIA + V+ LV ++E+ P +Y +P+ Sbjct: 234 -LHDWCLGGWGIAWRSTWEVESEIAAGRLVAVLEEFAAPPNGIYVVFPQ 281 >gi|70730747|ref|YP_260488.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345046|gb|AAY92652.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 299 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A +GS + AA L L+ ++ S + LET +G +L R R + LTE+G + Sbjct: 7 LEIFVRTADAGSISAAARSLGLTAAAASIALKRLETRLGSRLLARSTRSMRLTEEGRRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 LE ++ L++ S+ +G L+++ D G+N L L EF +P +++QL Sbjct: 67 ESVRLALATLEDGELALKQQSLGLAGVLQLSAPSDFGRNALLPWLDEFKAEHPQLRLQLR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186 LD++ D+ D D A+R P + SSL+ ++ H A A+P YL C P + + L Sbjct: 127 LDDRHADLFRDAVDVALRFGVP-EDSSLVALPILPGHRRIACASPAYLARCGVPQNPEAL 185 Query: 187 DKHNLITF 194 H+ + + Sbjct: 186 AGHSALLY 193 >gi|330992730|ref|ZP_08316674.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] gi|329760208|gb|EGG76708.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] Length = 306 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 3/244 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F + GS + A L LS SR + LE +G++L +R R L+LTE G Sbjct: 8 MQLFSRAMQMGSISAAGRALGLSPGMASRHLDALERRLGVRLCHRSTRRLSLTEAGQHYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +LE + + ++ SG LR + G + + F +P + + L Sbjct: 68 ELCQRLLPELEEVEARIASQRIEASGVLRFNVPLSFGVRYIAPLIPAFHAQHPAVTVDLG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D++ + D IR+ + ++ S L+ R+L + AAP YL P S +L Sbjct: 128 LNDRIVDLTGEGWDLTIRIGR-LRDSRLVTRRLAACELLVCAAPDYLTGRGRPRSWADLS 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H+ + F + + W R P L N+ +++ G GI PD+ Sbjct: 187 EHDCLGFS--LSGIAKPGEWFYGRSRERRVPVRGPLCANNGDALVACASAGLGIIYEPDF 244 Query: 248 IVKD 251 IV D Sbjct: 245 IVAD 248 >gi|200390770|ref|ZP_03217381.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603215|gb|EDZ01761.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 321 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR+G F AA +L LS S IS++I+ LE + +LF+R+ R + LT +G Sbjct: 21 EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +++ L +G + I + G + L F++ YPDI ++ Sbjct: 81 ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMITYPDITVK 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D IR+ I + I R+L T A+P YL+ +P S+ Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 L +H+ + +I + F NW+ T + R++ NS ++ + + G GI L Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255 Query: 244 LPDYIVK---DNPNLVRIM 259 ++ V + LVR++ Sbjct: 256 RSEWDVAQYIERGELVRVL 274 >gi|150377862|ref|YP_001314457.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032409|gb|ABR64524.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 298 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +GSF+ AA L+ + S++S+ ++ LE ++G +LF+R R LTLT+ G Sbjct: 11 LMAFVRTVEAGSFSAAARDLNTTPSAVSKSVARLEKKIGTRLFFRTTRALTLTQDGQLFF 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + +L+++ ++ S PSG+LRI+ +L LL G + F YPD+ + + Sbjct: 71 KRVAPLLRELDSSDDAIR-SQAAPSGRLRISMPGELAPLLLPGLFERFATAYPDLHLDIG 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 L ++ +D+ + D +R+ P Q LI R L + M A+ +LK+ Sbjct: 130 LTDRFVDLIREDYDVVLRVGDPTQ-GDLIVRHLADLPMVVVASSPFLKS 177 >gi|86356831|ref|YP_468723.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280933|gb|ABC89996.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 299 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 15/298 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G F+ AA +L++S + + + LE +G++L R R ++LTE G + Sbjct: 7 LEVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTETGKYYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +S++ +L+ S P G L++ T+ + + LL E++ LYP I + Sbjct: 67 ERSSQILAELDEADRTASALSTTPRGTLKVYTSGAIVRFLLP-VFSEYMELYPSISVDFS 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D IR P SSLI RKL +P Y+ + P E+ Sbjct: 126 VGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPIPKKPSEIA 183 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 HN + + P E W D ++S V++ ++++ L G G+ L P Sbjct: 184 DHNCLQYA-YYPYGDE---WRFEDGDGRQESVKVSGNVVSNNAEMLRFLTLNGRGLFLAP 239 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 ++V D+ L+RIM D FT+ Y K++ F + + F + R W Sbjct: 240 SFVVFDDIAEGRLIRIMPDYKPVEFTINAVYSNRSHLPTKVRLFIDLLAERFAEHRKW 297 >gi|221197713|ref|ZP_03570759.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221204729|ref|ZP_03577746.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221214924|ref|ZP_03587892.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221165151|gb|EED97629.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221175586|gb|EEE08016.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221181645|gb|EEE14046.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 313 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+ Y+ P +L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASTAYVAAHGAPQRPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 +H + G + P D W T+ P G+ + +VN ++ G GI Sbjct: 186 AQH--VCLGMVAPGFHYD-EW--TLTGPDGDESVPVTAPPFRVNVAEALAVAVREGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y + +VR+M + + +Y Y A R ++ K R W Sbjct: 241 GLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|170719962|ref|YP_001747650.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169757965|gb|ACA71281.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 298 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 7/248 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L+VF V GS + AAEQL + S++SR +S LE ++G L R R + LTE+G Sbjct: 6 EELQVFVAVIDCGSISAAAEQLGQTPSAVSRTLSRLEAKLGTTLVNRTTRRMDLTEEGRF 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V +++ + L + PSG+LRI + + + EF YPDI+++ Sbjct: 66 FLERSRLVLEQMDDMEERLSMNRQTPSGRLRINAAAPFMLHAILPWIGEFRSQYPDIELE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L D+ ID+ D AIR+ + + SSL R L + A+P YL+ P +++ Sbjct: 126 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLERHGTPQHVED 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L+ H L+ F P+ + + A DR P L +S ++ Q + G GI L Sbjct: 185 LNHHCLLGFSQ--PESLNQWPLRHAQGDRWAIRP---ALIASSGETLRQLALAGEGIVSL 239 Query: 245 PDYIVKDN 252 ++ ++ Sbjct: 240 SHFMTHED 247 >gi|152994932|ref|YP_001339767.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835856|gb|ABR69832.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 300 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 33/313 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + L VF VA +F AA++L +++S++S+ I LE ++GI LF R R + LT Sbjct: 3 MKIDLNILPVFIAVAEEHNFRVAADRLGITRSAVSQMIRKLEDQLGIALFTRTTRSVKLT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQE--SSVKPSGKLRIATTIDLGQNLLQGN-LKEFLL 117 E G L+ S+V +LE L+ S P G LRIA+T + + L G + EF Sbjct: 63 EAGEHLY---SQVRPQLENVNSSLENITSHKSPRGLLRIAST-SIAEPFLSGKFIVEFSK 118 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIHMHAYAAP 171 YPDI++ + + + + DI D +RL ++ + +QR + A A+P Sbjct: 119 KYPDIELDITVSDDEFDIVKAGFDAGVRLGDSLEQDMIALPICGLQRDM------AVASP 172 Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISC-LQVNSYL 229 Y+ P ++L H I + PK + W + + E + + N + Sbjct: 173 DYIAQQGIPKHPKDLLNHRCIGWR---PKLNNRPYYWEFSENEKDFEVSVEPQVTTNDFR 229 Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKA 285 +++ + G GI + + LV ++E+ + P+F+ YF YP + KL+A Sbjct: 230 LMLRVALAGGGITFATEETFRPFIKTGKLVPLLEEFL-PTFSGFYFFYPNRENMSPKLRA 288 Query: 286 FRNFIFLKARDWK 298 +F+ + WK Sbjct: 289 MVDFV----KSWK 297 >gi|16263562|ref|NP_436355.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021] gi|14524265|gb|AAK65767.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 297 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 20/295 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L+ F VA +G + AA +L +S+S +SR++ +E E+G++L R RG LTE Sbjct: 1 MDIEDLQTFVAVADAGGVSAAARRLGISKSIVSRRLLRVEAELGVQLLARTTRGAALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G +T + + +I+ + ++ P+ G+LR+A + G L + Sbjct: 61 G-----ITFRDHAARASAEIDTAKETILPTGELRGRLRVAMPLTFGPTHFAPVLADMARQ 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + I ++ +D+ + DCAIR +Q S+LI +++ IH A+P Y+K Sbjct: 116 HPQLHIHTSYSDRFVDLIAEGFDCAIRGAY-LQDSNLIAKRVGPIHGKLVASPDYIKAHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ EL H + G + M D + + TV +P G + +S ++ G Sbjct: 175 SPGTLDELVTHQALMQGTEAWQFM-DGDKIVTV-QPQGR-----FKADSATALAAAAAAG 227 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA LPD I + LV IM P Y P T K++A + Sbjct: 228 LGIAWLPDCITYGYVASGALVPIMTRYPVPPGAAYVVRPPGQHPTRKVRALTEML 282 >gi|330965841|gb|EGH66101.1| LysR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 298 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 13/287 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +V + SFT A ++L +S S + + I LE +G +LF+R+ R + LT +GS Sbjct: 9 LFVLVTETRSFTLAGKRLGISSSGVGKSIGRLEESLGARLFHRNTRSIALTLEGSIFLDR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +L+ Q+EL + P G+LRI+ + G L+ + +F+ YPDI++ + Sbjct: 69 CRRILSELDAAQLELSNARDLPKGRLRISVPLVFG--LVMPVVIQFMRTYPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R +P S L+ +++ + + +P Y R L Q D Sbjct: 127 DRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCVVGSPDYF--ARHGLPEQPADLV 183 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 N P + +W + R G Q N+ +++ G GI LPD Sbjct: 184 NHACLQHKFPSTGKFEHW--PLRREAGSEDFELPQTMVCNTTEVLVEVARAGLGITCLPD 241 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++ LV I+ D + + +P + + +L+ F +F+ Sbjct: 242 FMLASAIRKGELVPILADYTLHTGSFRLFWPSSKHLSVRLRVFIDFM 288 >gi|323499578|ref|ZP_08104547.1| hypothetical protein VISI1226_08774 [Vibrio sinaloensis DSM 21326] gi|323315318|gb|EGA68360.1| hypothetical protein VISI1226_08774 [Vibrio sinaloensis DSM 21326] Length = 316 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 12/264 (4%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GSFT +EQ ++ +S IS+QI LE E+G++L R R L+LT G+++ + L Sbjct: 17 GSFTKVSEQKNVDRSVISKQIRRLEEELGVRLLNRTTRSLSLTAAGNEMVNQAKSLRSLL 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 T Q +P G LRI ++ G+ +Q + F YPD++ +L L+++ +D+ Sbjct: 77 SDTHRLAQNYHEEPRGVLRITSSTMFGRQYVQDAISVFQKQYPDVEFELRLEDRMVDMVQ 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 + D R+ +P ++SSLI RK+ + AAP +L+ E S+++L+ + Sbjct: 137 EGFDIGFRIGRP-KNSSLITRKIARSRLLIVAAPAFLEKHGEVNSLEKLESLPATIYA-- 193 Query: 198 IPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPDYIVKD--- 251 P + F+ D + +VN + + G+ +A++ +V+D Sbjct: 194 APGLL--FDKFGYQDEQGKQQHFQLNVAYKVNDVEMLARSAAGGNTLAVVTAQMVQDEIK 251 Query: 252 NPNLVRIMEDVITPSF-TVYFCYP 274 LV IM + F T Y YP Sbjct: 252 QGKLVPIMTHLNIDDFGTFYAVYP 275 >gi|167553533|ref|ZP_02347282.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322032|gb|EDZ09871.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 321 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR+G F AA +L LS S IS++I+ LE + +LF+R+ R + LT +G Sbjct: 21 EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +++ L +G + I + G + L F++ YPDI ++ Sbjct: 81 ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMITYPDITVK 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D IR+ I + I R+L T A+P YL+ +P S+ Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 L +H+ + +I + F NW+ T + R++ NS ++ + + G GI L Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255 Query: 244 LPDYIVK---DNPNLVRIM 259 ++ V + LVR++ Sbjct: 256 RSEWDVAQYIERGELVRVL 274 >gi|146341482|ref|YP_001206530.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194288|emb|CAL78310.1| putative transcriptional regulator, LysR family [Bradyrhizobium sp. ORS278] Length = 301 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 129/283 (45%), Gaps = 8/283 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW LR F V R GS + AA L+Q ++ R I LE +G+ LF R GL TE Sbjct: 6 DWSLLRSFLAVVRRGSLSAAARATGLTQPTVGRHIDELEAGLGVALFTRSQAGLLPTESA 65 Query: 64 SKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 + L H E + + +P G +RI+ + +G +L L +P+ Sbjct: 66 TALLPHAEAMEAAFAALVRTAKTGGDAQQPRGVVRISASEIVGTFVLPPILAGIRHRFPE 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I I+L+L+N+ D+ AD A+R+ +P Q L+ R++ ++ + YA Y+ P Sbjct: 126 IVIELVLNNRTDDLLRRDADIAVRMIRPKQ-DGLVARRIGSVPLGLYAHRDYVARFGLPD 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +I++L H++I F + +A+ PI S + +S ++ + G GI Sbjct: 185 TIEQLGAHHIIGF----DRDDHSARSVASSQLPISRELFS-YRTDSDVAQVTAIEAGLGI 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + + + NP L+ ++ I + E K++ ++ Sbjct: 240 GGMQKAMARRNPALLPVLAGQIAFELDCWLAVHEDQKDSPPIR 282 >gi|114800127|ref|YP_760066.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114740301|gb|ABI78426.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC 15444] Length = 302 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 124/281 (44%), Gaps = 6/281 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD +R F V GS + AA L L+Q ++SR I LE +G LF R RGL T++ Sbjct: 8 WDHIRSFLAVLEEGSLSRAARVLSLTQPTLSRHIDQLEATLGGPLFTRSPRGLIPTDKAR 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + +G +RI+ + +G LL L YP + Sbjct: 68 MIEPYARTIAASAAAMARAASGAAGEMTGAVRISASEVVGIELLPEMLAPLREAYPGLTF 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +++ N+ D+ AD A+R+ +P Q +L+ RK+ + + +A YL+ P S++ Sbjct: 128 EILPTNQSSDLLRRDADIAVRMVRP-QQGALLARKVGDVMLGLFARRDYLEKYGTPRSMK 186 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 ++ H LI F T+DR + +S L+ G+GI + Sbjct: 187 DVAGHALIGFDHETISVQALRGMGLTLDRA-----SFAWRTDSDLAQTNLIRAGAGIGVC 241 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + + LV+++ + T + E LK ++KA Sbjct: 242 QAGLARRHGALVQVLPEDFTFPMETWVTMHEELKGVTRMKA 282 >gi|323525583|ref|YP_004227736.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382585|gb|ADX54676.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 298 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 23/297 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++RVF VA SFT A++ L + +++++ + +E +G +L R R + LT G Sbjct: 4 FEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTPDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + E S++ P G LR+ L ++ + L FL YP I++ Sbjct: 64 AYYGRCVRLIADLE--EAEGSFSNLAPKGLLRVNLQGTLARHFIVPALPAFLARYPGIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SS++ R++ + A+P YL+ EP Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLEQYGEPADPH 180 Query: 185 ELDKHNLITF-----GDLIPK--CMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCV 236 L +H + + G +P ME N P+ P +S V Y V Sbjct: 181 ALARHRAVNYVSSATGKPVPLEFSMEGRNT------PMLLPGVVSVTGVELYTG---SAV 231 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI +P Y V+D + L I+ D P V YP+ + + +++ F ++ Sbjct: 232 AGLGIVQVPRYRVRDELASGRLKIILADFPPPPLPVSVLYPQNRQLSSRVRVFAQWL 288 >gi|239994284|ref|ZP_04714808.1| putative transcriptional regulator, LysR family protein [Alteromonas macleodii ATCC 27126] Length = 298 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 144/301 (47%), Gaps = 22/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +S + L F V +GSF+ AA L+ + +SR ++ LE + + L R R L LT Sbjct: 3 VSSKTEDLEAFLTVVDTGSFSSAANLLNQQVAKVSRAVTRLEDGLDVTLLNRTTRRLELT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + + LE + L+ PSGKLR+ + L + EF +P Sbjct: 63 EEGELFLQYARDGLNILEKGEEALRLLKRAPSGKLRVDAASPFVFHQLAPLVGEFREAFP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI + + + ID+ D AIR+ + S+L R+L +H A+P YL+ + P Sbjct: 123 DITLDITSHDSIIDLLEHKTDIAIRI-GDLSDSNLHARRLGKSKLHIVASPQYLE--KYP 179 Query: 181 LS-----IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 +S I L+KH LI F D P + W D + L+ +S +I Q C Sbjct: 180 ISEGEDGISTLNKHKLIGFSD-SPSLNK---WPLKQDINLQ----YSLRASSGETIRQLC 231 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIM-EDVITPSF--TVYFCYPEALKNTGKLKAFRNF 289 + G GIALL ++V + +LV + +D+++P+ +V Y + + ++ AF +F Sbjct: 232 LAGQGIALLSHFMVHKDISAGSLVALFRDDIVSPNRRESVQAVYYKNSAVSSRISAFLDF 291 Query: 290 I 290 I Sbjct: 292 I 292 >gi|209544929|ref|YP_002277158.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532606|gb|ACI52543.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 305 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 10/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F VAR SFT AA +L S S++S I LE +GI+L R++R ++++E G++ Sbjct: 8 DDLMAFACVARVRSFTRAAAELGTSTSNLSHTIKRLEGRLGIRLLQRNSRSVSVSEAGNE 67 Query: 66 LHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L R ++E +++L+ SS+ SG +R+ T + +++ L F+ +PD Sbjct: 68 LLRSIGPELERIENAVGRLQLKRSSI--SGAVRLTATRQAYEMVIRPVLPAFVAAHPDAT 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++++D D+ D D IRL + I+ + + + M AAP YL P Sbjct: 126 VEVLIDYAFRDVIADQFDAGIRLGEKIEQDMIALKVGPDLRMAVVAAPSYLARHGTPRHP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242 ++L H I + + + + W + E R+ L N ++ + G GIA Sbjct: 186 RDLVNHRCINYRMVASGAI--YAWEFEENGLAFEVRVPGPLTFNEPQLMLDAALSGLGIA 243 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 L + V + LV ++ + P Y YP L+ AF Sbjct: 244 YLLENDVAPHVGSGGLVNLLAEWTAPFPGFYLYYPSRLQMRPVFGAF 290 >gi|146310744|ref|YP_001175818.1| LysR family transcriptional regulator [Enterobacter sp. 638] gi|145317620|gb|ABP59767.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 305 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 138/295 (46%), Gaps = 18/295 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L ++ V +GSFT AA+ L L+++ +S I LE E+G+ L R R + T+ G + Sbjct: 6 RLGMYVAVVDAGSFTGAAQTLGLTKAVVSFNIKQLEQELGVSLLTRSTRHVATTDAGERF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ E E++ SG LRI TT + G ++ L F YP ++IQ Sbjct: 66 YHRCQQLLQDAERVLDEVRSDHGGLSGLLRITTTPEYGARVVVPALAAFAAQYPHLRIQH 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL--SIQ 184 + +K ++ D AIRL + + S+ R + ++ A+P YL + E +++ Sbjct: 126 VSSSKSDNLISGRFDVAIRLGQ-LADSTHHARLIDQFDIYPVASPAYLDSLSEKGINTLE 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSIMQYCVLG 238 +L I + NW V P G+ + + +S +++ + + Sbjct: 185 QLASAKWIAHS----RLSTPLNW--QVLTPDGDHVMFAAHQPVTIMADSAATLLAFSLNH 238 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +G+ALLP ++ +D+ L R++ D + P +Y YP K++ F +F+ Sbjct: 239 AGVALLPSWLAQDSLAKGTLRRVLPDHVFPRQGIYALYPNTRHVPEKVRTFIDFL 293 >gi|50084764|ref|YP_046274.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1] gi|49530740|emb|CAG68452.1| putative transcriptional regulator (LysR family) [Acinetobacter sp. ADP1] Length = 294 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/303 (25%), Positives = 137/303 (45%), Gaps = 36/303 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L+ F V+AR + T+ A + + S++SR+I LE +G LF R + G LT Sbjct: 1 MKVDWDHLQFFLVLARVKTLTNTARIIGVEHSTVSRRIQALELALGSTLFKRESTGYELT 60 Query: 61 EQGSKLHRVTSEVYH--KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 +G L + H ++E +++++S G +RI T G L L E Sbjct: 61 LEGLAL------IPHVEQMEQAFLQIEKSGSPLQGHVRIGTPEGFGTAFLAQLLAELSKQ 114 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP + I LI K I +S AD I + +P +S I +L + Y + +YL+N Sbjct: 115 YPLLTIDLIPVPKMIKLSHREADIVISIDRP-KSGPYIITRLTDYCLKIYGSKNYLENTP 173 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVN------S 227 + + +L H + + +D I P + C LQ+N S Sbjct: 174 DIKKLDDLMHHRFVNY----------------IDDLIYSPELYCLERLPLQLNANFRSSS 217 Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 L+ G+G+A+LP ++ ++ L +++E+ + T + L++ ++K Sbjct: 218 ILAQQMAVSAGAGLAILPKFLAENRSELQQVLENEVRFIHTFWMLTLVDLQHEPRIKLVW 277 Query: 288 NFI 290 +F+ Sbjct: 278 DFL 280 >gi|310639228|ref|YP_003943987.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308752804|gb|ADO43948.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 295 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 16/292 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ +L F +A G F AA +L+L+ S++S + LE ++G++L R R + LTE G Sbjct: 5 DFGELAAFVAIAEEGGFRRAAARLNLTPSTLSHSLRSLEEKLGVRLVSRTTRTVALTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L R + +ET + + P+G +R++ + +L + F YPD+ Sbjct: 65 HALLRQIGPAFASIETAVETINDFRDHPAGTIRVSVPRTVAVRVLTPKFRAFTDRYPDVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +N +DI D IRL + ++ + R + A+P Y P + Sbjct: 125 LEVAAENGFVDIVKQGFDAGIRLGESLERDMIAVRVTPDLDTAVVASPDYFSRFPPPETP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVL- 237 ++L +H I + + + W D R + VN L +M L Sbjct: 185 RDLHRHRCIGWRQTGSGAL--YRWEFEKDG-----RAFNVAVNGPLVLDDPDLMVMAALD 237 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G G+A + + + + LVR+++D P + YP + L+A Sbjct: 238 GVGLAYSTEQHIGEHLASGRLVRVLDDWCPPYPGFFLYYPSRRQAPAALRAL 289 >gi|45367|emb|CAA78445.1| ORF3 [Pseudomonas aeruginosa PAO1] gi|444426|prf||1907161A opdE upstream ORF 3 Length = 249 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 111/242 (45%), Gaps = 13/242 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR G+FT AA QL ++QS++S+ ISGLE + I+L R R ++ T G +L Sbjct: 12 FVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAI 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E EL KPSG +RI + + LL L LL YPDI+++ ++ Sbjct: 72 GNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDINY 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 DI D D +RL I + + M AAP Y +P S ++L HN Sbjct: 132 GFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSPRDLVDHN 191 Query: 191 LITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 I G L + W DR + L N+ +I+ + G GIA L Sbjct: 192 CINMRMQSGGGL-------YAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAWL 244 Query: 245 PD 246 P+ Sbjct: 245 PE 246 >gi|107026116|ref|YP_623627.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105895490|gb|ABF78654.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] Length = 303 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 19/297 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AAEQL L + ++S + L + I+L R R + LT +G+ + Sbjct: 7 MRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLGKHLKIRLLQRTTRRVALTAEGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + +++ P G +R+ N + L +F YPD+++ + Sbjct: 67 ERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPDLRVVIS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+P YL P S EL Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDELP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W D GE S + VNS + + C+ G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLGLIQ 242 Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P D + + +LV ++ + V +P TG+ A R IF+ DW Sbjct: 243 APRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFP-----TGRHLAPRVRIFV---DW 291 >gi|134296386|ref|YP_001120121.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139543|gb|ABO55286.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 326 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 23/291 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE G ++ Sbjct: 14 FSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTEAGELFYQHC 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + + +Q+ P G +R++ + L Q +L L EFL YP++++ + + N Sbjct: 74 QAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLHRYPEVKVHIRVTN 133 Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + ID+ D D A+R+R +P Q+++++ R L AP L PL +L + Sbjct: 134 RVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQHAPPLVPADLARF 193 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVLGSGIA 242 + + D + T+ P G +PR L ++I + + G GIA Sbjct: 194 ETLDTPSV------DGRHVFTLIAPDGTRHLHEHDPR---LVTADLMTIREAVLDGLGIA 244 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+ + + L +M P +Y + + G A R F+ Sbjct: 245 ALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292 >gi|170747519|ref|YP_001753779.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654041|gb|ACB23096.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 316 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 132/299 (44%), Gaps = 18/299 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++R F VA GS + A + + QS+I+R + LE +G+ L R R L LT +G Sbjct: 9 ERMRSFVRVAERGSLSAVAREFGVGQSTITRHLRELEDALGVALISRTTRRLALTAEGLA 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + H +E E ++ P+G +R++ T LG + + F YPDI + Sbjct: 69 YYENSLRILHLVEQAGAEARDRRHAPAGTVRLSCTAALGVLHVGAIVFAFQDRYPDISVD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D+ + D AIRL P+ S+L R + AAP YL PL+ ++ Sbjct: 129 LSLTDERVDLVREGMDLAIRL-GPLADSALRLRAVGRSERRLVAAPAYLAARGRPLTPED 187 Query: 186 LDKH------NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H N+ G L+ + E P G L+V+ L+ + G Sbjct: 188 LVGHEGIRMTNVAGSGTLVLEGPEAGRRAV----PFG----GRLRVDHGLAARAAVLAGR 239 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 GIA ++V D + L ++ D PS + +++ +F+ + R Sbjct: 240 GIAPAHRWLVADCLADGRLEAVLPDYALPSVPLSLLIVPERAAIARVRLLADFLAAELR 298 >gi|241518470|ref|YP_002979098.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862883|gb|ACS60547.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 296 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 9/288 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+ F V +G FT AA + SQ ++S+ I LE +G+ LF R R +TLT+QG + Sbjct: 6 ELKAFLAVVETGGFTAAARRTGTSQPAVSKAIGALENRLGVALFNRSTRNVTLTDQGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ E+ S+V SG +RIA LG+ + + + L +P +++ L Sbjct: 66 FDRMKPLLEEIDNANREVIGSAVDMSGSIRIAVPTTLGRLHILPIIPDLLSRFPKLEVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +L + D+ D D IR+ ++ + R++ + + Y + P +L Sbjct: 126 VLSDLMRDMVEDRVDLVIRV-GSVEEPDAVVRRVAKTPLVCVGSRQYFEKHGIPTKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 HN + +G E NW + L NS +I + G GI + Sbjct: 185 ADHNCLVYGGF----KESANWPFVGQEGHFSVAVRGNLTSNSIETIRAGVLAGVGIGMFT 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + +P++V I+ + + + + F +P+ + +++ +F+ Sbjct: 241 KASLVEELSHPDVVTILGEYVQGTRDISFVWPKRRLVSARVRHVTDFL 288 >gi|326795613|ref|YP_004313433.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546377|gb|ADZ91597.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 306 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 19/275 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F VA+ SFT AA++L +S+S+IS+QI LE +G +L R+ RG+ LT G L Sbjct: 10 LLIFVEVAKKRSFTAAAKKLGMSKSAISQQIKRLEESIGHQLLIRNTRGVVLTSAGETLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L T EL +PSG +++ + ++ LK+ L +P + +++ Sbjct: 70 ARSELLNEQLSLTLTELNSEKEQPSGHFKVSVPPFFEKGIVIPALKQLCLEFPKLTPEVV 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + K D+ D AI I++ + + A+P YLK + SI+ L Sbjct: 130 VTEKWQDLIEHNLDAAI-FGGDIKNCDYRALSVGVVSEVFCASPRYLKQYGDVTSIENLS 188 Query: 188 KHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241 +H I + I D++ E RI+ +VN+ S ++ + G+ Sbjct: 189 EHKYIATAWHREKIQIFANDYS---------NEQRIALPYSAKVNTLTSALEVVLNDMGV 239 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 ALLP+++ + + NLVR++ D+ S+ YF + Sbjct: 240 ALLPEFLAQTHLNQENLVRVLPDLRGRSWHFYFLH 274 >gi|307299931|ref|ZP_07579716.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306904820|gb|EFN35403.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 298 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 10/296 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +RVF VA SFT AAE L L +S+I+ + LE +G++L R R + T G Sbjct: 4 FDAMRVFARVAERRSFTLAAEDLGLPRSTITDAVKQLEGRLGVRLLQRTTRVVRTTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + S PSG LRI ++ L L+ FL YPDI++ Sbjct: 64 AYYHRCVRLIADLEDAEAVF--SGASPSGLLRIDVHGTQARHFLLPGLQVFLDRYPDIRL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +DI + DC +R + S LI RKL + +A+P YL P + Sbjct: 122 HISETHQPVDIVREGYDCIVRAGH-LADSPLIGRKLAELKRGTFASPEYLARFGTPHVPE 180 Query: 185 EL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L D H ++ + F + +A R + P + + ++ C G G+ Sbjct: 181 DLFDGHQMVGLLSSDTPSVAPFAFVVAGKARELTLPTVVTV-TGPETNVASACA-GLGLI 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +P Y V + LV ++ D V+ Y L+ + +L+ F ++I + R Sbjct: 239 QVPRYRVASELASGALVEVLTDFPPSPLPVHVLYSHTLQLSPRLRVFIDWITERYR 294 >gi|262276030|ref|ZP_06053839.1| D-serine dehydratase transcriptional activator [Grimontia hollisae CIP 101886] gi|262219838|gb|EEY71154.1| D-serine dehydratase transcriptional activator [Grimontia hollisae CIP 101886] Length = 301 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 129/294 (43%), Gaps = 22/294 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA + SFT AAE+LHL+QS++S +I LE + + LF R R L+LT +G +L Sbjct: 14 LHCFSVVAETMSFTRAAEELHLTQSAVSHRIKKLEQRLDVTLFVRRPRQLSLTNEGEQLK 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V SE + + +EL + +P G I+ Q L L F +PD+ + L Sbjct: 74 LVVSEQFSAISLKLLELNRA--RPVGDFIISAPPTFSQKWLVPRLSLFAESFPDLTLHLR 131 Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 N ID + DCAI + S L+ +V + +YA H L N E L+ Sbjct: 132 TRNDLIDFKAEAFDCAIYFGHGRYNGLISHHLMDDAIVPVCSPSYAEHHALYNAPEKLAQ 191 Query: 184 QELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L D P + WL + E + + + + G G+ Sbjct: 192 CQL-------LHDAAPWASASLSDEWLYWANANGLELKGTNHSFDRADLALDAATHGMGV 244 Query: 242 AL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+ + +Y+ N LV ++ + ++ Y Y E + K+ AF+ ++ Sbjct: 245 AIGRMAYIQEYL--HNGKLVAPVDKPVKSPYSFYLVYREEHQGNAKILAFKEWL 296 >gi|172064063|ref|YP_001811714.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996580|gb|ACB67498.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 299 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 7/270 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SFT AA +L +SQS++S I LET +G++L R R + TE G +L Sbjct: 9 LLAFIAVARERSFTRAAARLGVSQSALSHTIRALETRLGVRLLTRTTRSVAPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++E L E KP+G +RI T + + LL L L Y D++++ + Sbjct: 69 QNLAPRFDEIEDELSALAELRDKPAGTVRINATDYVIRTLLWPRLSPILRDYRDLKVEFV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D DI D +RL + + R + M AP Y P + Q+L Sbjct: 129 TDYGLSDIVAQRFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAEREPPATPQDLV 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ I +P + W LA D + + N ++ + G G+A +P Sbjct: 189 AHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYEMLDAALAGYGLAYVPA 246 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCY 273 + + LV +++D P+F + Y Sbjct: 247 ELAAPHVEAGRLVSVLDD-WCPTFPGHHLY 275 >gi|163859097|ref|YP_001633395.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163262825|emb|CAP45128.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 307 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/287 (22%), Positives = 134/287 (46%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++ + G+ + AA +L L+ ++S +++ LE +G++L R R + +T++G Sbjct: 7 LAFFSLLVKHGNLSAAARELGLTPPAVSTRLANLERRLGVRLLNRTTRRVNVTQEGELYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + + +P G LR+ T G+ + + +F +P++++Q+ Sbjct: 67 AEGGRILADLEALERSVASARAQPRGLLRLNATFGFGRAHIVPAVSDFTRQFPEVEVQMQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +++ + D A+R + I + L RK+ + A+P YL+ EP + EL Sbjct: 127 LTDRPVNLLDEGFDVAVRFGE-IPDARLTARKIASNRRLLCASPQYLRAHGEPRTPGELQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 +H I + + W + + ++ L N S +++ + G GI + + Sbjct: 186 RHRCIVVRE---NDVAYGTWHLRAGQRVETVKVRGPLSSNDGQSALEWALDGHGIVMRSE 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + L ++ D TP ++ YPE L K AF +F+ Sbjct: 243 WETAAYLRSGRLRHVLPDWSTPPADIHALYPERLNLPAKTVAFVDFL 289 >gi|119504936|ref|ZP_01627013.1| putative transcriptional regulatory protein (LysR family) [marine gamma proteobacterium HTCC2080] gi|119459222|gb|EAW40320.1| putative transcriptional regulatory protein (LysR family) [marine gamma proteobacterium HTCC2080] Length = 300 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 28/299 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V +GSFT AA + SS+SR+I+ LE +G L R R + +TE G + + Sbjct: 7 LRYFSKVVETGSFTKAAATFSVPASSLSRRIADLEKSLGANLLKRTTRVVQVTEIGQQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +V LE + ++ P G LRI+T + G+ +L L EF LYP+I + L Sbjct: 67 QQVQDVLAHLERSDESVRSYQASPKGFLRISTMVTFGERILIPLLDEFKALYPEIILDLS 126 Query: 128 LDNKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ +S D D AIR + +Q+ L+ + + + A+P YL + P Sbjct: 127 FSDELSTLSRDEVDIAIRGGYAPNERVQAVRLMDNEFIPV-----ASPDYLASNGTPKHA 181 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H + F G C E WL + + IS N+ + + V G Sbjct: 182 TDLRDHQGLFFRTPNGPHPWVCEEKGQWLDVSGKALT---IS----NNSTWLRREAVAGR 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITP--------SFTVYFCYPEALKNTGKLKAFRNFI 290 GI + P + V+++ + ++ E I P + +Y Y + K+K +F+ Sbjct: 235 GICMTPRWSVQEDLDNGKVQELTIKPKVRVTQNKNLAIYLLYQKQQYAVPKVKVAVDFL 293 >gi|170735217|ref|YP_001774331.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821255|gb|ACA95836.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 310 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 13/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ VF VA SF AA +L ++ S++S + LE +G++L R R +LTE G Sbjct: 16 DFFSFTVFLAVAARRSFRGAATELEITPSAVSHSVKALERRLGVRLLNRTTRSTSLTEAG 75 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L ++ E+ + PSG +RI + + +L+ L FL YP++ Sbjct: 76 ERLAAKLRPAVSIIDEAMREVDDLRSAPSGTVRINASEGAIRLILRPVLARFLKSYPEVH 135 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++ D + DI D IRL + + + + + A A+P Y P + Sbjct: 136 LDIVSDGRLTDIVAAGFDAGIRLAEAVPQDMVAIPLMGNVRFAAVASPAYFAAHGRPATP 195 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H+ I F G + E T+D L + ++ + G Sbjct: 196 HDLYRHDCIRFRFESGSIYQWEFERRGVSETIDVS------GSLTLTDQPLMVDAAMDGI 249 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA +PD++V + + L R+++D P + YP + L+A FI Sbjct: 250 GIAFVPDHLVIEPLRDGRLERVLDDWCAPFPGLCLYYPGHRHVSQALRALIAFI 303 >gi|78063588|ref|YP_373496.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971473|gb|ABB12852.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 309 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 122/269 (45%), Gaps = 9/269 (3%) Query: 26 QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85 QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ +++ Sbjct: 25 QLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFYRECAEVVGRVNELTDQMR 84 Query: 86 ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145 E P+G+LRI + L EF YP IQ+ +I++++ +D + D A + Sbjct: 85 ELRATPTGRLRIQMLPGFALDHFGAPLMEFNRRYPGIQLDVIVNDRVVDPVEEGFDIAFQ 144 Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205 + PI S SLI+R+L T+ A+P YL P ++L +H + + Sbjct: 145 IFPPI-SESLIERRLFTVRRLFCASPAYLDAHGAPQHPRDLLQHTTALYSGYPSRN---- 199 Query: 206 NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261 W T + E + ++ NS + +Y + G G+ LP + + LV I+ D Sbjct: 200 RWTMTRGDEVVEMELPGMIRSNSVHLLREYALSGGGVVCLPTLVASEALVAGRLVPILTD 259 Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + YP + K+KA F+ Sbjct: 260 FQLAPLSFAAVYPATQRQALKVKALVEFL 288 >gi|269963662|ref|ZP_06177984.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269968367|ref|ZP_06182385.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269826994|gb|EEZ81310.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269831574|gb|EEZ85711.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 292 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF +AA +S + + + +S LE +G +L +R R +LTE G + Sbjct: 7 MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGRLYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +Q +P+G +++ + G+ ++ + +FL +PD+ ++L+ Sbjct: 67 QECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPDLNVELM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID AD IR+ + + SSL+ RKL HM A+P YL+ S+ +L+ Sbjct: 127 LDNNLIDPYRSEADVIIRIGELV-DSSLVARKLGEYHMTYCASPSYLEQHAPIQSLDDLE 185 Query: 188 KHNLITF 194 H+ + F Sbjct: 186 HHHCLGF 192 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282981|gb|ABR91391.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 314 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ ++ + + V +GSF+ AA +L + +++SR+I LET + ++ R R L++T Sbjct: 1 MTDRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + +++ + + P G L I T I G+ + + +FL YP Sbjct: 61 EAGQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI ++++L + + + ++ D A+R+ + + S+++ ++ TI+ A+P YLK P Sbjct: 121 DINVRVVLADHVVHLLEEHVDIAVRVGE-LPDSNMVAARIGTINRVMCASPAYLKKNGTP 179 Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227 +L KH ITF G + PK + L R I P S + VN+ Sbjct: 180 KKPDDLSKHQCITFDGLMAPKLWQ----LCENGREINVPVFSRVVVNT 223 >gi|78061771|ref|YP_371679.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969656|gb|ABB11035.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 300 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 10/287 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +W++ R F V GS + AA L ++Q + R ++ LE G LF R GL T Sbjct: 3 IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E L + + G +RI+ + + +L L + +P Sbjct: 63 EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPILAQLRRNHP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+L+ ++ D+ AD A+R+ P+Q +L+ R++ I + YA YL P Sbjct: 123 GLVIELVPTDRIQDVLKREADIAVRMAPPVQ-EALVARRIGEIDVALYARDDYLARNGSP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLG 238 +I EL H LI F + P ++ ++ R P+ + L+ +S ++ + G Sbjct: 182 TTIDELAHHPLIGFDTVTP-------FIRSMGRSMPLWKRDAFALRTDSNVAQLAMIRAG 234 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 GI + K +P LVR++ D + E L+++ + +A Sbjct: 235 YGIGFCQSGLAKRDPRLVRVLPDGPAMQLETWGVMHEDLRSSPRCRA 281 >gi|222082250|ref|YP_002541615.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726929|gb|ACM30018.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 314 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 137/290 (47%), Gaps = 10/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L + V +GSFT AAE+L ++++ +S Q++ LE E+G+ L R R L T++G Sbjct: 8 NRLIFYTTVVDTGSFTLAAERLGVAKAVVSHQVARLEQELGVTLLTRTTRRLHATDEGRL 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + E E+ + + +PSG L + ++D G ++ + + +P +Q+ Sbjct: 68 FYGRCVIILREAEAAYAEMSQKASEPSGMLTLTASLDYGAAVVAPTIAAYRQRFPQMQVN 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D+ +D++ D AIR+ + SS R+L T + AAP + P Sbjct: 128 VIFDDDVMDLAAGQVDLAIRVGW-LADSSNQARRLGTFDQYLVAAPSLIGAM--PSMSSP 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243 D NL + + W+ + +R ++C CVL G G+++ Sbjct: 185 ADAINLPWVANAALR--NPLRWIFSHAERETVTIDVNCPVTADKTPAAYACVLAGVGVSV 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PDY+ + LVRI+ D P+ ++ +P A +++AF + + Sbjct: 243 FPDYMAAKDIEAGRLVRILPDWSLPAGGIHAVFPSARFRPARVRAFVDML 292 >gi|254426162|ref|ZP_05039879.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335] gi|196188585|gb|EDX83550.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335] Length = 293 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 90/189 (47%), Gaps = 1/189 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F +A G T AA L LS +S S ++ LE VG +LF R R ++LT G Sbjct: 6 LRLFIRIAELGGVTAAAHDLSLSPASASARLVKLEEIVGFRLFNRTTRAVSLTTDGELFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LET +Q G LRIA G+ + L EF YP +++ L Sbjct: 66 PYAQQTLETLETGLNTVQGQEKSAQGLLRIAMPGSFGRMYIIPLLAEFQTCYPRVRLDLR 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D IR P+ SSLI RKL A+P YLK PL+ +L Sbjct: 126 LSDEVLDVVEGAYDLIIR-NAPLSDSSLIVRKLAFDRRLLVASPTYLKQHGVPLTPADLA 184 Query: 188 KHNLITFGD 196 +H +T G+ Sbjct: 185 RHRCVTLGE 193 >gi|150378372|ref|YP_001314966.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032919|gb|ABR65033.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 299 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 137/291 (47%), Gaps = 14/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F V+ SFT AA+++ +S + S+ + LE +G +L R +R ++LTE G Sbjct: 7 LRLFCTVSELKSFTAAADRIGISPAMASKHVMRLENRLGTRLLNRTSRHVSLTETGWLYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ L+ + + ++ P G L+++ + N L E+ YPD+ + + Sbjct: 67 NQAKQLLEGLDEVEAAIGNVTMAPRGTLKLSAPVCAASNGFVSRLAEYNRRYPDVCLDVD 126 Query: 128 LDNKDIDISMDYADCAI-RLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +++ + D A+ R P + L+ R L I H A+P YL+ P + + Sbjct: 127 LSGRMVNLVDEGFDLALRRATSPDRLDLGLVARPLADIEFHLMASPEYLERAGRPKGLAD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY--LSIMQYCVL-GSGIA 242 L+ H L+ F + D L +R + +I+ V S +I+Q L G G+ Sbjct: 187 LNGHALLRFSG---ANLSDIMELKGANR---QSKITFRTVMSSDNETILQLAALRGMGLV 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ + + L ++ + I S T++ YP + K++ F +F+ Sbjct: 241 YLPKWMTEQDIAAGRLETVLPNSIAFSITLFAVYPTRKHLSAKVRTFIDFM 291 >gi|83955961|ref|ZP_00964472.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. NAS-14.1] gi|83839725|gb|EAP78903.1| transcriptional regulator, LysR family protein [Sulfitobacter sp. NAS-14.1] Length = 298 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 7/253 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F + G F +A + +S S++SR ++ LE ++ + L R R + +T +G+ + Sbjct: 13 LAAFVGIVDDGGFAESARRRGVSASTLSRSVTRLEEQLKVTLLRRTTRSIEITPEGAAVL 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + ET Q E+ S P+G LR+ + ++L L EF YP IQ+ + Sbjct: 73 AEAREILDRSETLQ-EIATSGQAPAGPLRVNAPVPYVLHVLAPRLAEFRAEYPGIQLSID 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ +AD AIRL + + S ++ R L AAP YL P + +L Sbjct: 132 MTDALVDLIGSHADVAIRLGQ-LPDSDMLHRPLGRTAWKLVAAPEYLDRNGWPQTPTDLA 190 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 K + F P + + A + P+ P + + ++ Q + G GIA D+ Sbjct: 191 KLEQVRFA--APDHINTLRF-AGLSTPVTVP--PAVTAGNGEAVRQMVLGGLGIARFSDF 245 Query: 248 IVKDNPNLVRIME 260 ++ D+ + R++E Sbjct: 246 MIADDIDAGRLVE 258 >gi|119383081|ref|YP_914137.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372848|gb|ABL68441.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 324 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 14/294 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +D + L F V G+ T AA +L+LS+S +S++I+ LE +G LF R+A +T T Sbjct: 1 MRYDLNDLETFLTVMELGTVTAAAARLNLSKSVVSKRITDLEATLGAALFRRNAGRITPT 60 Query: 61 EQG----SKLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEF 115 E +L +E+ E+T ++ + P G L +A + G L + F Sbjct: 61 EAALRLAERLRPALAELIAAAESTAWDMD--GLAPLRGSLSVAAPMSFGVLHLGPIIARF 118 Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 P+++I + D++ D++ + D IR+ K ++ +L+QRKL A A+P YL Sbjct: 119 AAQNPELEISVDYDDRSRDLAREGFDIGIRIGK-MRDKALMQRKLCEDASIACASPAYLD 177 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 P ++ +L +H +I + L + F P + R+S +N+ +I Sbjct: 178 RKGRPQTLADLREHEVIGYSHLPNSQLWQFQDRDRFVSPFVQGRLS---MNNGEAIRDMT 234 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G G+A+LP ++V + L R++ T + +P KL+ F Sbjct: 235 IEGLGLAMLPGFVVAPALADGRLERVLPGFGTRPLPIVAVWPPVQPMPAKLRRF 288 >gi|194431656|ref|ZP_03063947.1| HTH-type transcriptional activator TtdR [Shigella dysenteriae 1012] gi|194420012|gb|EDX36090.1| HTH-type transcriptional activator TtdR [Shigella dysenteriae 1012] gi|320179307|gb|EFW54265.1| Putative transcriptional regulator LYSR-type [Shigella boydii ATCC 9905] gi|332086941|gb|EGI92076.1| HTH-type transcriptional activator ttdR [Shigella dysenteriae 155-74] Length = 310 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLSRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|16763713|ref|NP_459328.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993350|ref|ZP_02574445.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168465405|ref|ZP_02699287.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444233|ref|YP_002039573.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197247663|ref|YP_002145313.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265075|ref|ZP_03165149.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205351653|ref|YP_002225454.1| lysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855815|ref|YP_002242466.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16418833|gb|AAL19287.1| putative LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194402896|gb|ACF63118.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195631607|gb|EDX50127.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211366|gb|ACH48763.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243330|gb|EDY25950.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205271434|emb|CAR36245.1| putative lysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205328599|gb|EDZ15363.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206707618|emb|CAR31902.1| putative lysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245616|emb|CBG23412.1| putative LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992024|gb|ACY86909.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156945|emb|CBW16428.1| putative lysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911366|dbj|BAJ35340.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225049|gb|EFX50110.1| Putative LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128647|gb|ADX16077.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326626685|gb|EGE33028.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987281|gb|AEF06264.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 321 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR+G F AA +L LS S IS++I+ LE + +LF+R+ R + LT +G Sbjct: 21 EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +++ L +G + I + G + L F++ YPDI ++ Sbjct: 81 ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D IR+ I + I R+L T A+P YL+ +P S+ Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 L +H+ + +I + F NW+ T + R++ NS ++ + + G GI L Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255 Query: 244 LPDYIVK---DNPNLVRIM 259 ++ V + LVR++ Sbjct: 256 RSEWDVAQYIERGELVRVL 274 >gi|319897018|ref|YP_004135213.1| hth-type transcriptional regulator [Haemophilus influenzae F3031] gi|317432522|emb|CBY80880.1| putative HTH-type transcriptional regulator [Haemophilus influenzae F3031] Length = 305 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 134/289 (46%), Gaps = 9/289 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+Q ++S + S+ +S LE + +L R R + TE G Sbjct: 5 NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ + + G L I+ D G + NL F+ +P + I+ Sbjct: 65 YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++K ID+ + D A+R+ ++ SSL+ RK+ T +H A+P+YL+ P + + Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLEANGIPQTPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L+ HN G L M NW+ + +I V NS +++ G GIA L Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +I+ + L+ I+ + ++ YP K++AF F+ Sbjct: 240 AKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288 >gi|291619112|ref|YP_003521854.1| AaeR [Pantoea ananatis LMG 20103] gi|291154142|gb|ADD78726.1| AaeR [Pantoea ananatis LMG 20103] gi|327395442|dbj|BAK12864.1| HTH-type transcriptional activator AaeR [Pantoea ananatis AJ13355] Length = 305 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 121/273 (44%), Gaps = 11/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GSFT AA QLHLS SSIS+ ++ LE + +KL R R + LTE G + Sbjct: 7 MSIFAKVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGKIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + +L + P G LRI ++ + QN+L G + L YP + + L+ Sbjct: 67 QGCRRMLAEANQVHEQLYAFNNTPIGVLRIGSSSTMAQNVLAGMTSDMLRDYPGLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ ++ SSL R+L + M AA HYL P ++ Sbjct: 127 TGIPAPDLIADGLDVVIRV-GALKDSSLFSRRLGAMPMVVCAAKHYLTQHGTPEKPGDIT 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 K + + E V R + R N +++++ G+GIA +P Sbjct: 186 KFAWLEYSVRPDNNFELIAPEGIVTRLSPQGRFVT---NDSQTLIRWLKAGNGIAYVPMM 242 Query: 248 IVKDNPNLVRIMEDVITPSFT-----VYFCYPE 275 V D I D++ P + VY Y E Sbjct: 243 WVADEIKKGEI--DILFPQYQSDPRPVYALYTE 273 >gi|260899715|ref|ZP_05908110.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|308106880|gb|EFO44420.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] Length = 307 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 65 FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ + A+P Y+ E S + Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELTSPAD 184 Query: 186 LDKHNLITF 194 L +HN + + Sbjct: 185 LTQHNCLCY 193 >gi|271499880|ref|YP_003332905.1| LysR family transcriptional regulator [Dickeya dadantii Ech586] gi|270343435|gb|ACZ76200.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 123/270 (45%), Gaps = 7/270 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ I +E +G++L R R + TE G +L Sbjct: 9 LTAFVVVAEERSFTKAALRLGMAQSALSQIIRRVEERLGLRLLARTTRSVAPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H L+ L + +PSG +R+ T + +L +K L P+I I++ Sbjct: 69 AKLGPMLHDLDLMISSLGDLRNRPSGTIRLTTVEHAAKTILMPAIKRLLPENPEIHIEIN 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+ +DI + D IRL I + R I M A+P YL P E+ Sbjct: 129 VDHALVDIVANQFDAGIRLGGEIDRDMIAMRIGPDIPMAIVASPAYLTRFPAPKIPTEIV 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN+I F +P W L + R I L VN+ ++ + G G+ + Sbjct: 189 NHNVINF--RLPTSGTVIGWRLMSDGREIKVKGKGQLVVNTIELLVNAVLDGHGLGYIHL 246 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCY 273 V+ D+ L++++ D TP Y Y Sbjct: 247 DQVQGFIDSGELIQVL-DKFTPDIPGYHLY 275 >gi|209548512|ref|YP_002280429.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534268|gb|ACI54203.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 308 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 128/294 (43%), Gaps = 9/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + V V GS + A+ L +++SR++S LE + +L R R +TLTE G Sbjct: 5 DAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRTVTLTEAGRS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ ++E + P G L + I G+ + + +FL YPDI ++ Sbjct: 65 YVEAAREILDRVEEAERTAAGEYSVPKGALIMTAPIVFGRLHVLPVVVDFLKAYPDINLR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ ++ D+ D A+R+ + S+LI +L I YA+P YL P + Sbjct: 125 LMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLARQVTPRHPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+ ITF + +W T R + P S L VN+ + + V G GI + Sbjct: 184 LAAHDCITFDSM----ASTLSWTFTEGKRGLTVPIRSRLAVNTAEAAVDAAVAGLGITRV 239 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y L ++ D P V+ YP KL+A +F + R Sbjct: 240 LSYQAARAETAGLLAPLLADFEPPPAPVHLVYPAQGLVPLKLRALIDFATPRLR 293 >gi|149189756|ref|ZP_01868037.1| putative transcriptional regulator, LysR family protein [Vibrio shilonii AK1] gi|148836405|gb|EDL53361.1| putative transcriptional regulator, LysR family protein [Vibrio shilonii AK1] Length = 313 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 143/305 (46%), Gaps = 35/305 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L FY A GSF AA +L +S +++S+QI LE +G LFYR R + LT +G +L+ Sbjct: 11 LYYFYKAAELGSFKVAANRLFVSAAAVSQQIRQLEESLGCHLFYRQHRKVLLTPEGQQLY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI-- 124 R ++ + + T +Q + P+ +L I+T Q+ L ++ F PDI + Sbjct: 71 RELAKGFEHIFTG---VQSVNQDPNPNRLSISTLPSFAQHWLVPRIQSFRQQNPDIALLI 127 Query: 125 ----QLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 QL+ ++ +DI + Y + + + +QS L++ + + Y H + + Sbjct: 128 EPNNQLVSFQDQSVDICLRYGEG---IYEGVQSHLLMEDIIYPVCHPLYQQQHQIYD--- 181 Query: 180 PLSIQELDKHNLI--TFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 +Q+L + +LI T+ D+ D+N WL V P+G LQ N +++ + Sbjct: 182 ---VQDLHRADLIEDTWPDM------DWNLWLQHVGAPVGN---RTLQYNGSHFVVEGAL 229 Query: 237 LGSGIALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G+ L+ Y LVRI + P F Y C PE N KLK F ++ + Sbjct: 230 SVQGVGLIKHSLAYRYIKEGTLVRIGNYALKPKFAYYLCAPEHYFNRPKLKIFIQWLQQE 289 Query: 294 ARDWK 298 D+K Sbjct: 290 VADFK 294 >gi|91785149|ref|YP_560355.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91689103|gb|ABE32303.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 327 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A+ GS + A ++ L+ ++ S +++ LE + +LF R R L LT++G Sbjct: 7 IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + LQ GK+R++ T D G+NLL L EF LYP++ L Sbjct: 67 NCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AIR P Q SSL+ RKL A+P Y+ EP D Sbjct: 127 LSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYIARKGEP-----KD 180 Query: 188 KHNLITF 194 H+L F Sbjct: 181 PHDLANF 187 >gi|330958307|gb|EGH58567.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. maculicola str. ES4326] Length = 302 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 136/291 (46%), Gaps = 21/291 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F +VA + SFT A ++L +S S + + I LE +G +LF+R R + LT +GS Sbjct: 9 LFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEENLGARLFHRSTRSIALTLEGSLFLER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +LE + EL + P G+LR+ ++ L L+ + EF+ +PDI++ + Sbjct: 69 CRRILAELEAAEKELSNARDLPRGRLRV--SVPLVSGLVMPVIIEFMRAFPDIELDIDFS 126 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI + D +R + S L+ +++ + AP Y + P +L +H Sbjct: 127 DRMVDIIEEGFDVVLRT-GDLSDSRLLSKRMGGFQLRIVGAPDYFERRGMPAFPADLVQH 185 Query: 190 NLI-----TFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + G +L P ED +D P + N+ ++ G GIA Sbjct: 186 ACLHHKFPSSGKFELWPLRRED--GADDLDLP------QTMICNTTEILVDVARAGLGIA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LPD+++ LV I++D + + +P + + +L+ F +F+ Sbjct: 238 CLPDFMIASAIKRGELVSILDDYTVHTGSFRLLWPSSKHLSVRLRVFIDFL 288 >gi|322832440|ref|YP_004212467.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321167641|gb|ADW73340.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 299 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 23/299 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ +LR F VA SF AA +L+L+ S++S + LE +G++L R R ++ TE G Sbjct: 5 EFGELRAFVAVAEEKSFRKAAARLNLTASTLSHSLRSLEERLGVRLLNRTTRQVSPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L +EV L +++ + P G +RI T + L +F +P Sbjct: 65 YAL---LAEVVPALSVISDAMEKVNALRGIPKGTVRINTPRIAADMVFLPQLPKFCQAFP 121 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI ++L ++ +DI + D +R+R +Q R H Y +P Y C +P Sbjct: 122 DITLELATNDGFVDIISEGFDAGVRIRGDVQQDMSAVRLTADFHSAVYGSPDYFARCPQP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L H I ++ + + W R I P L V+S +S+M L Sbjct: 182 QTPADLKNHACIGRREIASGSL--YRWEFEKNGRQITVPVSGPLVVDS-VSMMTRIAL-D 237 Query: 240 GIALL-------PDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNF 289 GI L+ D +V + L+R++ED V P F +Y YP + LKA + Sbjct: 238 GIGLVYSAQSAEHDALVAEG-KLIRVLEDWSVTFPGFFLY--YPGHRQLPAALKAVTGY 293 >gi|312883118|ref|ZP_07742849.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369278|gb|EFP96799.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 293 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 29/301 (9%) Query: 3 FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +++ + S+IS++I LE ++G++L R R + TE Sbjct: 1 MDWILSVKSYVNVVDEGSFNGAARRMNTTSSAISKRIHWLEEKIGVQLLKRTTRSVIQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G+ ++ ++ E + S P+G L+I TT+ +G L L +FL YPD Sbjct: 61 EGALFYQRARAQLDDWQSIIDETRSVSQTPAGVLKIGTTLTIGSKFLVQYLNDFLQAYPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I+I L+ S+ R + + S S L + YA+P Y+K EP Sbjct: 121 IRIHLVTTPPGELPSLTLDLFISREIEQLNSLSFKATPLFKQKVGFYASPEYVKLHGEPK 180 Query: 182 SIQELDKHNLITFGDLI---------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 S +EL H L+ +G+ I K + + N++ T P ++ Sbjct: 181 SHEELSAHKLLIWGETIQREISLISGEKILLNGNFVTT------NPE----------ALF 224 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 G G+ L D ++ ++ L+RI+ D+ TVY YP+ + K F ++ Sbjct: 225 HAAKSGMGLLLSNDAMIIEDIKAGKLIRILPDITVDESTVYAYYPKLDYQHTRTKLFLDY 284 Query: 290 I 290 + Sbjct: 285 L 285 >gi|237808402|ref|YP_002892842.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] gi|237500663|gb|ACQ93256.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187] Length = 306 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 8/242 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A+S SFT AAEQL +S+S++ + IS LE +G KLF+R R L+LT G Sbjct: 16 FVTTAQSQSFTQAAEQLGISKSAVGKSISQLEQRLGTKLFHRTTRKLSLTTAGEAYFEGC 75 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + L + + + PSG ++I G+ ++ L +P++++ L ++ Sbjct: 76 LVALNTLNSAEATVLHRQNVPSGNIKIDMPAAFGRAVMMPILLGIEEQFPELKLTLTFND 135 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 K ID + D IR + S+ L+ +KL + A+P YL+ P + +L KH Sbjct: 136 KIIDPIEEGIDLCIRFGEVKDSTDLVAKKLGYQRLVMCASPDYLQRFGTPADLDDLKKHR 195 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---QVNSYLSIMQYCVLGSGIALLPDY 247 I + + +WL D+ + R + Q++ +++Q C+ GSG+ P+ Sbjct: 196 CI----MGYRKGSPLSWLVK-DKHGNDVRFNPTPTHQISDGDAMIQACLAGSGLTQFPES 250 Query: 248 IV 249 ++ Sbjct: 251 LL 252 >gi|33593404|ref|NP_881048.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33572760|emb|CAE42690.1| probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gi|332382813|gb|AEE67660.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 306 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 DWD LR F VAR+ + AA +L + ++++R++ LE E+ LF + + G LTE Sbjct: 2 LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L ++ + T + L SG +RI T G +L +F YP Sbjct: 62 DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ + + +S AD AI + +P Q + KL + Y P YL Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L HN I + D + E +L V + ++ L+ S ++ + G + Sbjct: 181 ERADLAGHNFIGYVDEL-LFSERLRYLEDV---LPNSQV-VLRSTSVIAQYHATLQGQSL 235 Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +I +P L ++ D IT SF +Y C+ E L+ ++ A F+ Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAITRSFWMY-CH-EDLRRLKRVSALWEFM 284 >gi|260775863|ref|ZP_05884759.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260608279|gb|EEX34448.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 282 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 25/292 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R V +GSFT AAE+L LS+S S+ ++ +E ++G+ LF+R R L+++ G + Sbjct: 1 MRTVVAVIETGSFTAAAERLGLSKSLTSKYVNQVEAQLGVTLFHRTTRKLSVSPPGWHYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R +V + + +L + SG LR+ + + LL + F YP+IQI L+ Sbjct: 61 RQAQQVLAQFDKLYSQLDAHNQTASGPLRVTASQGFAEELLSPLIPAFHAQYPEIQIDLL 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+ +D+ D A R + S L R L+++ AYAAP L+ Q +D Sbjct: 121 VTNQKLDLVEHGIDIAFRAST-LDDSGLHYRPLMSLSSAAYAAPE--------LAEQYVD 171 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------ISCLQVNSYLSIMQYCVLGSGI 241 + + C+ D N T P+ + + NS I Q + G G Sbjct: 172 RPEAL-------PCLIDSNLHPTARWPVSNTSQRSRAVKTVFKSNSPRLIRQLTLAGMGA 224 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + PD + L ++ ED +F + Y +++ F +F+ Sbjct: 225 SYQPDVLAAPYVQRGELQKLDEDFSAMTFPLAALYRGGEYQPERVRVFIDFV 276 >gi|209550507|ref|YP_002282424.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536263|gb|ACI56198.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 296 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 22/293 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA ++T AA +L +SQS++S + LE ++G++L R R + TE G +L Sbjct: 9 LTAFVVVAEERNYTRAANKLGISQSALSGIVRRLEEKLGVRLLARTTRSVAPTEAGERLV 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ +L E KP+G +RI T + +L+ + + L YPDI I++I Sbjct: 69 QTLRPMLQDIDQVVADLSEFRDKPAGTIRITTVEHAARTILRPAVTKLLKDYPDIVIEII 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D +D+ D D +RL + + R + M +P Y + P + ++L Sbjct: 129 IDYGLVDLVTDRFDAGVRLGVQVAKDMIAVRISDDVPMAIVGSPAYFEQHAPPATPEDLV 188 Query: 188 KHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H I + + +L VD P L N+ I+ + G G Sbjct: 189 EHRAINLRLPTSGVLNAWRFLQDGREVRVRVDGP--------LVFNTIDLILDAALDGCG 240 Query: 241 IALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A +P D + K LV ++ P + YP N AF+ F+ Sbjct: 241 LAYMPLDQVEKHVAEGRLVAVLRSWTPPLPAYHLYYP----NRASSPAFKLFV 289 >gi|16130956|ref|NP_417532.1| transcriptional activator of ttdABT [Escherichia coli str. K-12 substr. MG1655] gi|89109830|ref|AP_003610.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157156353|ref|YP_001464520.1| transcriptional activator TtdR [Escherichia coli E24377A] gi|170018688|ref|YP_001723642.1| transcriptional activator TtdR [Escherichia coli ATCC 8739] gi|170082603|ref|YP_001731923.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|188493021|ref|ZP_03000291.1| transcriptional regulator, trunscation [Escherichia coli 53638] gi|193061941|ref|ZP_03043037.1| HTH-type transcriptional activator TtdR [Escherichia coli E22] gi|193067398|ref|ZP_03048366.1| HTH-type transcriptional activator TtdR [Escherichia coli E110019] gi|194426156|ref|ZP_03058711.1| HTH-type transcriptional activator TtdR [Escherichia coli B171] gi|194436795|ref|ZP_03068895.1| HTH-type transcriptional activator TtdR [Escherichia coli 101-1] gi|209920531|ref|YP_002294615.1| transcriptional activator TtdR [Escherichia coli SE11] gi|218555630|ref|YP_002388543.1| transcriptional activator TtdR [Escherichia coli IAI1] gi|218696765|ref|YP_002404432.1| transcriptional activator TtdR [Escherichia coli 55989] gi|238902171|ref|YP_002927967.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253772104|ref|YP_003034935.1| transcriptional activator TtdR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163007|ref|YP_003046115.1| transcriptional activator TtdR [Escherichia coli B str. REL606] gi|256019024|ref|ZP_05432889.1| transcriptional activator TtdR [Shigella sp. D9] gi|256024360|ref|ZP_05438225.1| transcriptional activator TtdR [Escherichia sp. 4_1_40B] gi|260845814|ref|YP_003223592.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O103:H2 str. 12009] gi|260857190|ref|YP_003231081.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O26:H11 str. 11368] gi|297521598|ref|ZP_06939984.1| transcriptional activator TtdR [Escherichia coli OP50] gi|300821653|ref|ZP_07101799.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300917402|ref|ZP_07134068.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300923721|ref|ZP_07139746.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300931945|ref|ZP_07147242.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|300950731|ref|ZP_07164619.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300958446|ref|ZP_07170585.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|301021235|ref|ZP_07185267.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|301325588|ref|ZP_07219056.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|301644755|ref|ZP_07244730.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|307139748|ref|ZP_07499104.1| transcriptional activator TtdR [Escherichia coli H736] gi|307310315|ref|ZP_07589963.1| transcriptional regulator, LysR family [Escherichia coli W] gi|309793624|ref|ZP_07688050.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|331643758|ref|ZP_08344889.1| HTH-type transcriptional activator TtdR [Escherichia coli H736] gi|331679136|ref|ZP_08379808.1| HTH-type transcriptional activator TtdR [Escherichia coli H591] gi|332280124|ref|ZP_08392537.1| transcriptional activator TtdR [Shigella sp. D9] gi|1723886|sp|P45463|TTDR_ECOLI RecName: Full=HTH-type transcriptional activator ttdR gi|1203799|gb|AAA89140.1| alternate name ygiP; ORF_310 [Escherichia coli str. K-12 substr. MG1655] gi|1789440|gb|AAC76096.1| transcriptional activator of ttdABT [Escherichia coli str. K-12 substr. MG1655] gi|85675861|dbj|BAE77111.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|157078383|gb|ABV18091.1| transcriptional regulator, LysR family [Escherichia coli E24377A] gi|169753616|gb|ACA76315.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739] gi|169890438|gb|ACB04145.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|188488220|gb|EDU63323.1| transcriptional regulator, trunscation [Escherichia coli 53638] gi|192932161|gb|EDV84759.1| HTH-type transcriptional activator TtdR [Escherichia coli E22] gi|192959355|gb|EDV89790.1| HTH-type transcriptional activator TtdR [Escherichia coli E110019] gi|194415464|gb|EDX31731.1| HTH-type transcriptional activator TtdR [Escherichia coli B171] gi|194424277|gb|EDX40264.1| HTH-type transcriptional activator TtdR [Escherichia coli 101-1] gi|209913790|dbj|BAG78864.1| putative transcriptional regulator [Escherichia coli SE11] gi|218353497|emb|CAU99612.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218362398|emb|CAR00022.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|238862289|gb|ACR64287.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242378610|emb|CAQ33397.1| Dan [Escherichia coli BL21(DE3)] gi|253323148|gb|ACT27750.1| transcriptional regulator, LysR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974908|gb|ACT40579.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253979064|gb|ACT44734.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|257755839|dbj|BAI27341.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O26:H11 str. 11368] gi|257760961|dbj|BAI32458.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O103:H2 str. 12009] gi|260447904|gb|ACX38326.1| transcriptional regulator, LysR family [Escherichia coli DH1] gi|299881593|gb|EFI89804.1| LysR substrate binding domain protein [Escherichia coli MS 196-1] gi|300314887|gb|EFJ64671.1| LysR substrate binding domain protein [Escherichia coli MS 175-1] gi|300415359|gb|EFJ98669.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300419991|gb|EFK03302.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300449968|gb|EFK13588.1| LysR substrate binding domain protein [Escherichia coli MS 116-1] gi|300460368|gb|EFK23861.1| LysR substrate binding domain protein [Escherichia coli MS 187-1] gi|300525791|gb|EFK46860.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300847639|gb|EFK75399.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|301076909|gb|EFK91715.1| LysR substrate binding domain protein [Escherichia coli MS 146-1] gi|306909210|gb|EFN39705.1| transcriptional regulator, LysR family [Escherichia coli W] gi|308122581|gb|EFO59843.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|315062368|gb|ADT76695.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315137654|dbj|BAJ44813.1| transcriptional activator TtdR [Escherichia coli DH1] gi|315617132|gb|EFU97741.1| HTH-type transcriptional activator ttdR [Escherichia coli 3431] gi|323154515|gb|EFZ40715.1| HTH-type transcriptional activator ttdR [Escherichia coli EPECa14] gi|323163110|gb|EFZ48943.1| HTH-type transcriptional activator ttdR [Escherichia coli E128010] gi|323168096|gb|EFZ53783.1| HTH-type transcriptional activator ttdR [Shigella sonnei 53G] gi|323173695|gb|EFZ59324.1| HTH-type transcriptional activator ttdR [Escherichia coli LT-68] gi|323183643|gb|EFZ69040.1| HTH-type transcriptional activator ttdR [Escherichia coli 1357] gi|323377044|gb|ADX49312.1| transcriptional regulator, LysR family [Escherichia coli KO11] gi|323935938|gb|EGB32233.1| LysR substrate binding domain-containing protein [Escherichia coli E1520] gi|323941842|gb|EGB38021.1| LysR substrate binding domain-containing protein [Escherichia coli E482] gi|323946870|gb|EGB42888.1| LysR substrate binding domain-containing protein [Escherichia coli H120] gi|323971817|gb|EGB67042.1| LysR substrate binding domain-containing protein [Escherichia coli TA007] gi|324018224|gb|EGB87443.1| LysR substrate binding domain protein [Escherichia coli MS 117-3] gi|324119668|gb|EGC13549.1| LysR substrate binding domain-containing protein [Escherichia coli E1167] gi|331037229|gb|EGI09453.1| HTH-type transcriptional activator TtdR [Escherichia coli H736] gi|331073201|gb|EGI44524.1| HTH-type transcriptional activator TtdR [Escherichia coli H591] gi|332102476|gb|EGJ05822.1| transcriptional activator TtdR [Shigella sp. D9] gi|332345014|gb|AEE58348.1| HTH-type transcriptional activator TtdR [Escherichia coli UMNK88] Length = 310 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|332531552|ref|ZP_08407449.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332038915|gb|EGI75344.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 355 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/337 (22%), Positives = 137/337 (40%), Gaps = 54/337 (16%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS T AA ++ + + R++ LE +G+KL R R L+LT +GS Sbjct: 6 QMESFVAVATRGSLTAAARAEGVAPAIMGRRLDALEERLGVKLLLRTTRRLSLTHEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + VK SG LR+ G+ + + F L+ D+ I L Sbjct: 66 LEDCQRLLADIANAEAGVSAGGVKASGHLRVTAPAGFGRRHVAPLVPRFRELHTDVTISL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D++ + DCA+R+ + SSL+ +L A P YLK P + Q+L Sbjct: 126 NLSDRVVDMAREGYDCAVRVGD-LPDSSLVSVRLADNRRLCVATPEYLKRHGTPQTPQDL 184 Query: 187 DKHNLITFGD----------LIPKCMEDFNWLATVDRPIGE------------------- 217 + + + +P+ + + +DRP GE Sbjct: 185 ARFDCLVLSSEASQTRGWAFRVPRKAQGLHQEELLDRPEGETVLNADLTGTGLAGADLAG 244 Query: 218 ------PRISCLQVNSYL---------------SIMQYCVLGSGIALLPDYIVKDN---P 253 P ++ Q L + +C+ G GIA + V+++ Sbjct: 245 AGLSDTPLVNGAQAEGELIYYRPQGPLDCSDGQVLHDWCLAGYGIAWRSTWEVEEDVSAG 304 Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV ++ED P +Y +P+ +L+ + +F+ Sbjct: 305 RLVPVLEDYAAPPNGIYVVFPQRKHLPLRLRLWLDFL 341 >gi|295688208|ref|YP_003591901.1| LysR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430111|gb|ADG09283.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC 21756] Length = 298 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 19/291 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R+F + SFT AA L L +S+ + + LE +G +L R R ++ T G Sbjct: 4 FEAMRLFVRIVERRSFTQAAADLDLPRSTATEAVQQLEARLGARLLQRTTRQVSPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + L+ + ++ + P G LR+ L + + +L +FL YP++++ Sbjct: 64 AYYRRCLRLLDDLDDAESAFRQRT--PRGLLRVDVQGALARRFVLPDLPDFLAAYPELKL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL ++ +D+ D DC +R+ + S+++ R++ + AAP YL P + Sbjct: 122 QLTEGDRLVDLVRDGVDCVLRMGD-LTDSAMVARRVALLPEVTCAAPAYLARFGTPRTPD 180 Query: 185 ELDKHNLITF-----GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 +L H ++ F G P + E N A P + + VNS + + +LG Sbjct: 181 DLGGHRMVGFLQAATGHPYPLEVTEGGNVRAV-------PVAADVTVNSAENTVAMGLLG 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ +P Y V+D + L+ ++ D V YP + + + +++ F Sbjct: 234 LGLIQVPRYRVEDFLADGRLIEVLADYPPTPTPVSLLYPRSRQLSPRVRVF 284 >gi|126642344|ref|YP_001085328.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 311 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 5/221 (2%) Query: 34 ISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSG 93 ++ I LE + ++L R R ++LT G+ + T+ + + + ++ P G Sbjct: 1 MTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYYDRTARILADVADIESSFHDAERGPRG 60 Query: 94 KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSS 153 +LRI + +G+ +L L++F YPDI + + L+++ +D+ + DCAIR+ + ++ S Sbjct: 61 QLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDS 119 Query: 154 SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVD 212 SLI R++ T A+P YL+ EP SI++L K H I F + +F+W VD Sbjct: 120 SLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVD 177 Query: 213 RPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252 I + + VN + + + G GI P Y++ ++ Sbjct: 178 DLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGPRYMLTNH 218 >gi|161525037|ref|YP_001580049.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350220|ref|YP_001945848.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342466|gb|ABX15552.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189334242|dbj|BAG43312.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 313 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+Q++ + + SR +S LE + +L R R + LTE G + Sbjct: 6 NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ + E ++ +PSGKL++ LGQ+ L + + YPD+ ++L Sbjct: 66 LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPDVHVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ + D AI + + + S L+ ++L + A+ Y+ P +L Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASTAYVAAHGAPQCPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 +H + G + P D W T+ P G+ + +VN ++ G GI Sbjct: 186 AQH--VCLGMVAPGFHYD-EW--TLTGPDGDESVPVTAPPFRVNVAEALAVAVREGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y + +VR+M + + +Y Y A R ++ K R W Sbjct: 241 GLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287 >gi|254249178|ref|ZP_04942498.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124875679|gb|EAY65669.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 309 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 9/269 (3%) Query: 26 QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85 QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ +++ Sbjct: 25 QLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQMR 84 Query: 86 ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145 E P+G+LRI + L F YP IQ+ +I++++ +D + D A + Sbjct: 85 ELRATPTGRLRIQMLPGFALDHFGAPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDIAFQ 144 Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205 + PI S SLI+R+L T+ AAP Y+ P ++L +H + + Sbjct: 145 IFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN---- 199 Query: 206 NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261 W T + E + ++ NS + +Y + G G+ LP + D LV I+ D Sbjct: 200 RWTMTCGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILTD 259 Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + YP + K++A F+ Sbjct: 260 YQLAPLSFAAVYPATQRQALKVRALVEFL 288 >gi|107023136|ref|YP_621463.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686624|ref|YP_839871.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105893325|gb|ABF76490.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652339|gb|ABK12978.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 310 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 13/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ VF VA SF AA +L ++ S++S + LE +G++L R R +LTE G Sbjct: 16 DFFSFTVFLAVAARRSFRGAATELEITPSAVSHSVKALERRLGVRLLNRTTRSTSLTEAG 75 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L ++ E+ + PSG +RI + + +L+ L FL YP++ Sbjct: 76 ERLAAKLRPAVSIIDEAMREVDDLRSAPSGTVRINASEGAIRLILRPVLARFLKSYPEVH 135 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++ D + DI D IRL + + + + + A A+P Y P + Sbjct: 136 LDIVSDGRLTDIVAAGFDAGIRLAEAVPQDMVAIPLMGNVRFAAVASPAYFAAHGRPATP 195 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H+ I F G + E T+D L + ++ + G Sbjct: 196 HDLYRHDCIRFRFESGSIYQWEFERRGVSETIDVS------GSLTLTDQPLMVDAAMDGI 249 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA +PD++V + + L R+++D P + YP + L+A FI Sbjct: 250 GIAFVPDHLVIEPLRDGRLERVLDDWCAPFPGLCLYYPGHRHVSQALRALIAFI 303 >gi|262280597|ref|ZP_06058381.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258375|gb|EEY77109.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 300 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 146/295 (49%), Gaps = 10/295 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LET++ + L R R L LT++G + Sbjct: 6 EELVAFITIIDTGSFVAAAEHLKQTPSGVSRSLTRLETKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +RI + +++ + +F YPDI+I+ Sbjct: 66 FLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + + A+P+YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPYYLAIKGTPTQPEE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L++H+LI F P + + + + +I + +S ++ Q + G GIA L Sbjct: 185 LEQHDLIGFTR--PAYINSWPIKVGDEYFFAQAKI---KASSGETVRQLTIRGHGIARLS 239 Query: 246 DYIV-KD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 ++ V KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 240 EFEVWKDIEEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|325274365|ref|ZP_08140460.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324100499|gb|EGB98250.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 316 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 9/272 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD L+ F VAR+ + AA++L + +++SR+IS LE +G LF + G LT Sbjct: 10 ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + L ++ SSV SG +R+ T G + L F+ YP Sbjct: 70 AEGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + ++ I +S AD I L +P + + KL + YA YL + Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQGYLDSHAPI 188 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L +H I++ D + E + R + + + Y + +Q G G Sbjct: 189 RQVADLARHPFISYVDDLAFSSELLYLANLIPGATAHLRSTSV-IAQYTAALQ----GRG 243 Query: 241 IALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270 +A+LP ++ +P LV ++ ED+ +T F +Y Sbjct: 244 LAILPCFLAAQDPRLVTVLPEDIEVTRQFWMY 275 >gi|296157336|ref|ZP_06840172.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295892672|gb|EFG72454.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 327 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A+ GS + A ++ L+ ++ S +++ LE + +LF R R L LT++G Sbjct: 7 IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + LQ GK+R++ T D G+NLL L EF LYP++ L Sbjct: 67 NCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AIR P Q SSL+ RKL A+P Y+ EP D Sbjct: 127 LSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYIARKGEP-----KD 180 Query: 188 KHNLITF 194 H+L F Sbjct: 181 PHDLANF 187 >gi|255262596|ref|ZP_05341938.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] gi|255104931|gb|EET47605.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 135/290 (46%), Gaps = 9/290 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD ++VF VAR+ S + A + L + +++ R+++ LE E+G LF + +G LT+ Sbjct: 2 MNWDDMKVFLAVARAESLSGAGKVLKVDPATVGRRVARLEEELGGALFVKSPQGYALTDL 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+++ + L + E Q + + SG++R+ LL + PD+ Sbjct: 62 GARIDAHARQAEAALSLAREEAQGQAEQLSGQIRVGAPDGCANFLLPKVCADISRENPDL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++Q++ + +++S AD AI + P L+Q K+ +H A+ YL +C + Sbjct: 122 EVQILALPRVVNLSKREADMAITVSPPDTGRLLVQ-KVTDYKLHVVASKPYLAHCDPITT 180 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H ++ + D+I D+ VDR +Q+N+ G+G+ Sbjct: 181 KADLKNHPIVGYIHDMIFDAELDYLREMDVDRVTVASNSVAVQLNALRQ-------GAGV 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + D+ + L RI+ D I+ + + Y + K +LK F + + Sbjct: 234 GIGHDFALPLIGRLERILMDEISLTRSFYLVRHASDKRVERLKRFADRLM 283 >gi|170696811|ref|ZP_02887916.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170138280|gb|EDT06503.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 328 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 25/301 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EF+ YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTVSQTILSTILPEFMHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ +D+ D D A+R+R P ++++++ R L AP L+ P Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + + +P D + + P G EPR+ V + LS ++ Sbjct: 185 LQPNDLARFETLD----VPTT--DGRHVYHLIAPDGSRHVHEHEPRL----VTADLSTIR 234 Query: 234 YCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 VL G GIA LP+ + L +M P+ +Y + + G + A R F Sbjct: 235 EAVLCGVGIAALPEMMYGAPLRTGQLSPVMPGWTFPAPQLYAVF---VSRQGMVPAVRAF 291 Query: 290 I 290 + Sbjct: 292 V 292 >gi|150396063|ref|YP_001326530.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027578|gb|ABR59695.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 118/272 (43%), Gaps = 11/272 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VA SFT AA +L SQSS+S + LE +G++L R R L T G +L Sbjct: 9 LLAFLAVAEEKSFTRAAARLGTSQSSLSLILKRLEARLGVRLLTRTTRSLAPTNAGEQLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +E + L E +P+G RI +L L FLL YPDI+++L+ Sbjct: 69 ATLGPALGSIEAQLLALGEFRDRPAGSFRITAGQHAIDTILWPKLAPFLLEYPDIKVELV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ DI + D +RL ++ + R M AAP + P Q+L Sbjct: 129 AESALTDIVTERFDAGVRLGDQVEKDMIAVRIGPLARMIVVAAPSCFVDRARPQVPQDLT 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H I +P + W +R E R+ + N ++ + G G+A + Sbjct: 189 GHRCINL--RLPSYGGFYAW--EFERDGHEVRVRVDGQVAFNGVPQLVNAALDGFGLAYV 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 + +V++ + LV+I+ D TP F Y Y Sbjct: 245 HEDVVREHLKDGRLVQILGD-WTPPFPGYHLY 275 >gi|78062096|ref|YP_372004.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969981|gb|ABB11360.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 290 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 25/292 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR SFT AAEQL ++Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 10 LQIFSTVARHRSFTRAAEQLCITQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +E + ++E I ++ + + L++ T + + + F +PD+ +Q+ Sbjct: 70 PVVNESFARIE--DISMRLTRQRTDLALKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185 + +D S + D A+ + + + L + AP + PL S+ + Sbjct: 125 TAWQHVVDFSTEPFDAAV-VYGTSPGAGVFALPLFDERLTPVCAPELRQTS--PLDSVGD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYCVLG 238 L +H L+ + +W A +D P P L + + ++ + V Sbjct: 182 LARHTLLH------PTRDHRDWRAWLDHAGERSVDPARGPTFDTLDLATNAAMQGFGVAI 235 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ D + L R + V+ +F YPE + N K++AF ++I Sbjct: 236 GDVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPENIGNQQKIRAFSDWI 285 >gi|328469377|gb|EGF40323.1| transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 307 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 65 FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ + A+P Y+ E S + Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELTSPAD 184 Query: 186 LDKHNLITF 194 L +HN + + Sbjct: 185 LTQHNCLCY 193 >gi|269968260|ref|ZP_06182286.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827117|gb|EEZ81425.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 294 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 21/289 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + V SG F+ AA+ L + + +SR +S +E+++GI L R R + +TE+G + Sbjct: 6 DELEILMAVVDSGGFSSAADALGIQVARVSRAVSKVESQLGITLLNRTTRRVEVTEEGHQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ + E+ P G+LR+ + L ++ F YPDIQ+ Sbjct: 66 FVEAVRLGLLQIQQAEEEIITRGELPKGRLRVDAASPFVLHQLVPLIQPFKEAYPDIQLD 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ + + S+L + L T + A P YL P ++ + Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGR-LSDSTLHAKPLGTSPLFIVATPGYLSKRGFPEAVGD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HNLI F + N + EP I +S ++ Q + G+GIA L Sbjct: 185 LRSHNLIGF-----SGAKVLNQWPLRGFEMIEPDILS---SSGETVRQLVLAGNGIACLS 236 Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 ++VKD+ + R+ V E + NTG+ + N +F K+ Sbjct: 237 GFMVKDDLDSGRL----------VALFESEKITNTGREQV--NAVFYKS 273 >gi|119896868|ref|YP_932081.1| LysR family transcriptional regulator [Azoarcus sp. BH72] gi|119669281|emb|CAL93194.1| probable transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 296 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 5/189 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W+ F VA+SGSFT AAEQL L +SS+S ++ LE ++G +L R R L LTE Sbjct: 3 TINWNDWYAFATVAQSGSFTRAAEQLDLPKSSVSHAVARLERQLGQRLIERSTRRLALTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 QG ++ ++ +L+ E ++ +P G LRIAT + G L + + L +P Sbjct: 63 QGERMLAQVLPLFERLDAVAAEAGDARDEPQGVLRIATPYEFGAIQLGEVVNDVLNRHPR 122 Query: 122 IQIQL---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +QI++ IL + D A + + S + R++ ++ YAAP ++ Sbjct: 123 LQIEIDVRILGAEPASGGYDVVFFAT--GEALPDSERVVRRVYSVARGLYAAPALVRRLG 180 Query: 179 EPLSIQELD 187 P S+ EL+ Sbjct: 181 LPRSVAELE 189 >gi|116250067|ref|YP_765905.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254715|emb|CAK05789.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 323 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 17/290 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA+ SF AA +L ++ S+IS+ + LE VG LF R R + LTE G + Sbjct: 13 DGVEAFLSVAQHRSFRKAAGELGVTPSAISQAVRALEERVGAVLFIRTTRSVGLTEAGER 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L +E +P+G LR+ + LL+ + F +P+I+++ Sbjct: 73 FLTRAKPAFEELVAASALARELGQRPAGLLRLTVPPAVVPILLEPLIASFCQAFPEIEVE 132 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + + +DI+ D D IRL + I + + R + + +P YL+ P I + Sbjct: 133 IAANEELVDIAADGFDAGIRLGQFIAADMVAVRLTPSFPLVVVGSPEYLRRRGWPERIDD 192 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H I G + P W + +PI L + + +++ + G Sbjct: 193 LRQHACIRMRRSNGSIAP-------WSFVIGKKPIEAVVSGPLIAHDFPTMLGATIGDMG 245 Query: 241 IALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +A +P+ I VK LVR++E + V+ YP + KL+AF Sbjct: 246 LAQVPEPIAAGPVKAG-KLVRVLEVFEPVAPGVFLYYPSRHQVMPKLRAF 294 >gi|82776963|ref|YP_403312.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae Sd197] gi|81241111|gb|ABB61821.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae Sd197] Length = 314 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 15 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 75 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 194 LSA---------LP-CL----LIKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 239 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 240 WCLDGQGIALRSWWDVSENIASGHLVQVLLEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298 >gi|262377558|ref|ZP_06070779.1| transcriptional regulator [Acinetobacter lwoffii SH145] gi|262307445|gb|EEY88587.1| transcriptional regulator [Acinetobacter lwoffii SH145] Length = 296 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 126/266 (47%), Gaps = 9/266 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +D+L VF +A GS AEQL+ + S+ISR + LE ++ +KL R R L LT Sbjct: 1 MKSTFDELLVFVTIADCGSIVKTAEQLNQTTSAISRTLQRLEKKLNVKLIERTTRSLNLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G ++ L + L +P+G ++I + +++ + EF+ YP Sbjct: 61 YDGKIFLERARKLLSDLNEAEELLINPGTEPTGLIKIDSATPFVLHVIIPLIPEFIERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I I+L + ID+ D AIR ++ SSL + L ++ A+ YLK P Sbjct: 121 KISIELTSHDHVIDLLEHKIDVAIRF-GDLEDSSLYAKLLYKSRLYIVASAEYLKKNNLP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 SI EL++H L+ F P + NW ++ + + S N S+ Q + G G Sbjct: 180 KSIIELNQHRLLGFSH--PLHLN--NWPIYINDQLYKTSPSITASNGE-SVRQLALQGVG 234 Query: 241 IALLPDYIVKDNPN---LVRIMEDVI 263 IA L ++++ + N L+ + ED I Sbjct: 235 IACLSEFLILKDINEGKLIALFEDEI 260 >gi|126738862|ref|ZP_01754558.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] gi|126720043|gb|EBA16750.1| transcriptional regulator, LysR family protein [Roseobacter sp. SK209-2-6] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 1/191 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW+ +R F A +GS + AA +L L+Q ++SRQ++ LE ++G+ LF R + L+LT+ G Sbjct: 5 DWNHIRAFLKTAETGSLSAAARKLGLTQPTLSRQVAALEADLGLLLFERLGKSLSLTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + +V ++ Q+ + G +RI + +L L E L P + Sbjct: 65 RELLAHSQKVGKAVDGLQLAASGQTQSIEGTIRITASDVTTAFVLPPVLHELRLRAPRLT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L+ N D+ AD AIR +P Q LI R + YAA YL+ P S+ Sbjct: 125 IDLVAANDIRDLMRREADIAIRHVRPEQ-PELITRLVQEPTARFYAATSYLERRGRPRSL 183 Query: 184 QELDKHNLITF 194 + H+ ++F Sbjct: 184 ADFSNHDFVSF 194 >gi|15889471|ref|NP_355152.1| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157339|gb|AAK87937.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 314 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 4/283 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V R GS + AA +L ++Q + R I LE VG LF R GL TE Sbjct: 9 WDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIGALEEAVGFPLFIRSPHGLMPTEAAL 68 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + K G +RI+ + +G +L + ++P ++I Sbjct: 69 ALRPYAENLAATAAALMRAASGEVGKIEGTVRISASDIIGVEMLPPIVALMQEVHPRLEI 128 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L + D+ AD AIR+ +P Q +++ R + + +A YL P +++ Sbjct: 129 ELSLSDTLEDLLRREADIAIRMTEP-QQDAIVMRYIGNFRLGFHATRDYLAKAGIPKAME 187 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIA 242 EL++H ++ F P + ++D I + ++ + ++ Q ++ +GI Sbjct: 188 ELNEHRMVGFDRKTPFIRAAIQRMRSLDPDIPDIEDISFEIRADSNLAQLAMIRASAGIG 247 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + + +P LV ++ D+ P T + E LK + + +A Sbjct: 248 VCQIGLARKDPRLVHVLPDIDIPLHT-WVAMHENLKTSPRCRA 289 >gi|89108638|ref|AP_002418.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|90111335|ref|NP_416313.4| DNA-binding transcriptional activator for dmlA [Escherichia coli str. K-12 substr. MG1655] gi|170081455|ref|YP_001730775.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|238901013|ref|YP_002926809.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|3915993|sp|P76250|DMLR_ECOLI RecName: Full=HTH-type transcriptional regulator DmlR; AltName: Full=D-malate degradation protein R gi|1736422|dbj|BAA15594.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|87081978|gb|AAC74869.2| DNA-binding transcriptional activator for dmlA [Escherichia coli str. K-12 substr. MG1655] gi|169889290|gb|ACB02997.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|238862273|gb|ACR64271.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|260449080|gb|ACX39502.1| transcriptional regulator, LysR family [Escherichia coli DH1] gi|315136440|dbj|BAJ43599.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] Length = 307 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 11/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + +S++I+ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + + EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALLALAKAYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186 Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L + +I + F W L + P L N + Q+C+ G GIAL Sbjct: 187 LSALPCL----VIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIAL 242 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V +N +LV+++ + P+ V+ Y L + K++ F+ Sbjct: 243 RSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291 >gi|330820460|ref|YP_004349322.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327372455|gb|AEA63810.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 327 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 21/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA L+ + ++SR +S LE + +L R R L+LT G Sbjct: 6 NMRVFARVVEAGSFTAAALSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLSLTPAGESY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + E + +PSG LR+ + +GQ+ + L + P++ ++L Sbjct: 66 LLRCRQILADVDAAEEEASCAHERPSGLLRLHSYASIGQHYVLPALNAYREQRPEVSVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ +D A+ + S L+ +L A+P YL++ P + EL Sbjct: 126 TLSQRVPDLFDGSSDMAVVTASSLPDSELVSYRLGETFSILCASPAYLRSRGAPATPAEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 H+ +T L +W L T + + + R+S +Q N+ S+ G GI +L Sbjct: 186 AAHDCLT---LQTPAFPTHDWLLETREGQVEQIRVSGPVQTNTAESLAVAIGEGVGIGML 242 Query: 245 PDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 P Y +++D +L+R++ ++Y YP R F+ K R W Sbjct: 243 PLYAAIGLLRDG-SLMRVLPAHTLQRMSIYALYPS-----------RRFVDAKVRTW 287 >gi|300718641|ref|YP_003743444.1| temperature-dependent LysR-family regulator A [Erwinia billingiae Eb661] gi|299064477|emb|CAX61597.1| Putative temperature-dependent LysR-family regulator A [Erwinia billingiae Eb661] Length = 305 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 123/282 (43%), Gaps = 36/282 (12%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA ++ +S S++S+ ++ LE E+ +KL R R L LTE G Sbjct: 7 MSVFARVVELGSFTAAANRMQMSVSAVSQTVAKLEDELQVKLLNRSTRSLGLTEAGKIYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +L + P G LRI ++ + QN+L E L YP + + L+ Sbjct: 67 QGCRRMMSEAQQVHEQLYAFNNTPVGTLRIGSSSTMAQNVLANMTAEMLREYPGLTVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + D+ D D IR+ +Q SSL R+L ++ M AA YL P Sbjct: 127 TGSPAPDLIADGLDLVIRV-GALQDSSLFSRRLGSMPMVVCAAKSYLTQHGTPEK----- 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------------LQVNSYLSIMQY 234 P + +F+WL RP + ++ N +++++ Sbjct: 181 -----------PSDLGNFSWLEYSVRPDNDFELTSPEGVSIRLSLQGRFATNDSQTLIRW 229 Query: 235 CVLGSGIALLPDYIVKD--NPNLVRIM----EDVITPSFTVY 270 V G+GIA +P V D N V I+ + P + VY Sbjct: 230 LVSGTGIAHVPLMWVIDEINAGQVEILFAHYQSAPRPVYAVY 271 >gi|260869812|ref|YP_003236214.1| putative DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O111:H- str. 11128] gi|257766168|dbj|BAI37663.1| predicted DNA-binding transcriptional regulator, LYSR-type [Escherichia coli O111:H- str. 11128] gi|323178765|gb|EFZ64341.1| HTH-type transcriptional activator ttdR [Escherichia coli 1180] Length = 310 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|330817742|ref|YP_004361447.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gi|327370135|gb|AEA61491.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 334 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 142/311 (45%), Gaps = 25/311 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q ++ L EFL YP+ Sbjct: 65 AGQLFYQHCQAMLAEAQAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLRRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q+ + N+ ID+ D D A+R+R +P ++++++ R L +P L P Sbjct: 125 VRVQVRVTNQVIDLFEDSIDIALRVRSEPPENANIVVRPLWRTEQMLVGSPSLLGQNAPP 184 Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231 L +L + + GD FN +A P G EPR L ++I Sbjct: 185 LVPDDLVRFETLDTPSGD----GRHVFNLIA----PDGTRHVHEHEPR---LVTADLMTI 233 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + + G GIA LP+ + L +M P +Y + +++F + Sbjct: 234 REAVLDGVGIAALPEMMYGGALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVD 293 Query: 289 FIFLKA-RDWK 298 F+ K RD++ Sbjct: 294 FLVEKLDRDYR 304 >gi|254521917|ref|ZP_05133972.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219719508|gb|EED38033.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 105/192 (54%), Gaps = 3/192 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F V +GSFT AA L +S++++++ + LE + ++L R R +++T G+ Sbjct: 4 FEAMRAFARVVETGSFTRAALTLQVSRTTVTQLVQQLEAHLRLRLLNRTTRRVSVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + +LE + L +++ +P G+LR+ + L L +F + YP+IQ+ Sbjct: 64 AYYPRIARLLAELEEVEGGLGDAATQPRGRLRVDVPGPYARLRLVPALPDFQVRYPEIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++++D+ D DC IR P +L+ R L + + +A+P Y++ +P + Sbjct: 124 DIGVSDREVDVIADNVDCVIRGGTP-ADPALVARPLGALPIGFHASPGYVQRFGQPADPR 182 Query: 185 ELD--KHNLITF 194 L+ H+++ F Sbjct: 183 ALEGPDHHMVGF 194 >gi|167584731|ref|ZP_02377119.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 303 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/291 (22%), Positives = 136/291 (46%), Gaps = 10/291 (3%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D L+ ++ R+ GSF+ A + + Q ++S+ +S +E ++G++L R LT T++ Sbjct: 2 DSLQSMWLYTRAVELGSFSAVAREEKIGQPTMSKVVSAMEKQLGVRLLQRTTTSLTPTDE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + ++ +++ + +P GKL ++ + LG+ L + EFL YP+I Sbjct: 62 GRRFYERCKQMLETYADAVADVRGQAQRPVGKLTVSAPMGLGELRLNALVLEFLAQYPEI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L ++ ID+ + D AIR+ + + + R + A P YLK Sbjct: 122 EVELNLTDRIIDLVEESIDVAIRIGNALPPDA-VARNVAWSPRVLVATPDYLKRAPRIRR 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +H+ + + + + A I P +VN+ +++ + + G G+ Sbjct: 181 PEDLLRHSFVGYARAAVGAQLELSKGAET---IVVPTNGRYRVNNSVALRECYLAGIGLG 237 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V+ D LVR++ P +V+ P + + F F+ Sbjct: 238 SAPAWVVQDLIDAGQLVRVLPKWAIPPHSVHLITPSRRYPPLRARVFLQFM 288 >gi|92113463|ref|YP_573391.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796553|gb|ABE58692.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 134/283 (47%), Gaps = 9/283 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GSF A +L LS + +S+QI+ LE +G++L R R L LT +G + Sbjct: 7 MHIFRAVVDAGSFAGGARKLELSNAMVSKQIAKLEASLGVRLLTRTTRRLQLTAEGERYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + +L+ + L E + GKLR++ +D G L L+ F +P + + ++ Sbjct: 67 NGASRLLDELQELETGLGEQRGEVRGKLRLSAPLDFGVRALIPALQAFECRHPAVMLDVV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D + D +R+ + ++ SSLI R L+ + H YAAP YL P +L Sbjct: 127 LEDRRVDPVAEDFDLVVRIGE-LEDSSLIARPLMDMPRHVYAAPSYLARHGTPTHPADLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246 H + + E W V+ RI + N+ ++ + + G G+ P Sbjct: 186 GHRCLHYS----LAREGQYWHFQVEGAPYRVRIRPVMACNNGRALTEAAIRGMGLVYKPA 241 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++ + + LVR+++ +V+ Y E +L+A Sbjct: 242 FLGEPEVEAGRLVRVLDGFSVAPISVHLLYAEREFIPARLRAL 284 >gi|114327821|ref|YP_744978.1| LysR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315995|gb|ABI62055.1| transcriptional regulators, LysR family [Granulibacter bethesdensis CGDNIH1] Length = 315 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 11/247 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F V R+G FT AA + +S++S Q+ LE +G++L R R LT++G + Sbjct: 32 DPIQTFVEVVRAGGFTAAARRTGTPRSTVSLQVRALEETLGVRLLKRSTRSFALTDEGQR 91 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ S L +LQ G +R+ D LL + F + ++ Q Sbjct: 92 LYDKASGPVDVLARALDDLQAGDGVLGGLIRLTVPADFPTALLASAITSFTQAHTAVRFQ 151 Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ N +D+ D D A+R+ P Q++ I+R+L+ I YA+ +LK P +I Sbjct: 152 IMWTNTVMDLVEDNIDIAVRVGANPAQTA--IERRLLDIEWAFYASASWLKRKGRPENIS 209 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 E++ + I+ ++ +E + L V P G ++V+S+ + G G+ALL Sbjct: 210 EVE--DFISPQPILRAYLEK-HVLGGVSLPTG-----AIEVDSHAMARDLMLNGFGVALL 261 Query: 245 PDYIVKD 251 P + +D Sbjct: 262 PQGLCQD 268 >gi|325518242|gb|EGC97999.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 293 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 16/289 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF AR S+T AAE+L LSQS+ISRQ+ LE ++G+ LF R R + LTE G + Sbjct: 13 LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S ++ ++ S +G LR+AT G L +L +F +P + + L Sbjct: 73 VELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++D +D D AI + + L +L + A A+P ++ Q Sbjct: 132 SRIGNVDFHLDDIDAAITVGAG-EWPGLRAHRLYNEFLIAIASPDATAGA--AVTPQWAT 188 Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 K L+ E F N L IG ++ S+L +Q G GI L+P Sbjct: 189 KQTLLGVTSNQQAWAEWFSHNRLDHRQMRIG----PSFELTSHL--IQAVRTGMGIGLVP 242 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +++D LV I D IT + Y YP A + L AFR+++ Sbjct: 243 KVLMEDELGRGELVSI-GDAITSQRSYYLVYPPANETLPSLAAFRDWLL 290 >gi|315182229|gb|ADT89142.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC 11218] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 21/298 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA +GSFT AA+ L LS+ ++R + +E + +L +R R ++LT G + Sbjct: 7 MRSFVEVANTGSFTKAADNLTLSRLQVTRHVQEIEDWLKQRLLHRTTRKVSLTAAGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + +I E S +G +RI+ I L Q+LL ++ F L+P + I ++ Sbjct: 67 TRCEQILDQTAELEIRALEQSQSLTGSIRISAPIGLAQHLLLDTVEAFTELHPQVTIDIL 126 Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ + D D A+R ++P SLI R+L+ + A+P YL+ + +L Sbjct: 127 ASDRLSQLVDDRVDVALRFTQQP--DESLIARRLIQVDTVVCASPQYLQTHDPIIEPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 +HN + + W D R+S + + I++ L G+ LP Sbjct: 185 SRHNCFVH-------LTNHTWDLVRDNQHFSVRVSGTVRANDMEILRSAALHHKGVVWLP 237 Query: 246 DYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + NP LV+++ D +PS ++ Y L + + R FI A W+ Sbjct: 238 CDLA--NPCLRRGELVKVLADYHSPSSHLWAVY---LSRSYQTPLVRQFIDFVAERWQ 290 >gi|307313748|ref|ZP_07593366.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|306899238|gb|EFN29875.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 20/295 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L+ F VA +G + AA +L +S+S +SR++ +E E+G++L R RG LTE Sbjct: 1 MDIEDLQTFVAVADAGGVSAAARRLGISKSIVSRRLLRVEAELGVQLLARTTRGAALTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G +T + + +I+ + ++ P+ G+LR+A + G L + Sbjct: 61 G-----ITFRDHAARASAEIDAAKETILPTGELRGRLRVAMPLTFGPTHFAPVLADMARQ 115 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P + I ++ +D+ + DCAIR +Q S+LI +++ IH A+P Y+K Sbjct: 116 HPQLHIHTSYSDRFVDLIAEGFDCAIRGAY-LQDSNLIAKRVGPIHGKLVASPDYIKAHG 174 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ EL H + G + M D + + TV +P G + +S ++ G Sbjct: 175 SPETLDELVTHQALMQGTEAWQFM-DGDKIVTV-QPQGR-----FKADSATALAAAAAAG 227 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA LPD I + LV IM P Y P T K++A + Sbjct: 228 LGIAWLPDCITYGYVASGALVPIMTRYPVPPGAAYVVRPPGQHPTRKVRALTEML 282 >gi|241203242|ref|YP_002974338.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857132|gb|ACS54799.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 298 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 9/260 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V +GS + A L S + +S++I LE +G +L R R ++LTE G + Sbjct: 7 LEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + S + G L+I+ G+ + +LK+F+ +P++ I L+ Sbjct: 67 DRVLGILAGLEEAEFYISGRSAQMHGTLKISAPTSFGRMHIAPHLKDFMEAHPELAINLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ DI D AIR+ + + SSL+ R+L + A+P YL + EP I EL Sbjct: 127 LTDEFSDIVGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLASHGEPKHIDELK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H +P D L D + L NS I + + G GIAL + Sbjct: 186 RHR------CLPAHNNDTWRLNGPDGALSLRPEGLLVTNSSEVIREAVIAGLGIALRSTW 239 Query: 248 IVKDNPNLVRIMEDVITPSF 267 + + R+++ + P++ Sbjct: 240 DIGEELKAGRLVQ--VLPAY 257 >gi|160896393|ref|YP_001561975.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361977|gb|ABX33590.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 297 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 135/297 (45%), Gaps = 14/297 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+L+ F V GS T AAEQL + S ISR +S LE ++ L R R L LT Sbjct: 1 MKTTLDELQAFRAVIDCGSITAAAEQLGQTTSGISRSLSRLEKKLATTLVRRTTRSLELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G++ EV L+ + EL P+G LR+ + + + EF LYP Sbjct: 61 EEGARFLARAREVLQALDAAEEELAARRQAPAGLLRVNAASPFMLHAIVPLVGEFRALYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D+ ID+ D AIR+ + ++ S+L R L + A+P YL+ Sbjct: 121 LITLELNTDDLHIDLLAQRTDIAIRIGE-LRDSTLHARLLCHSVLRVLASPAYLQAHGPV 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 S+ L +H I +P +W + P G R L +S ++ Q + Sbjct: 180 ASVAALARHQRIGNSQ-VPGLN---HW--PLRTPEGGDRWDAAPQLTASSGETMRQLALA 233 Query: 238 GSGIALLPDYI-VKDNPN--LVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ L D++ V+D LV+++ + + ++ Y ++ AF +F+ Sbjct: 234 GQGVVCLADFMTVRDRAQGELVQVLARETVQQRQPIHAVYYRNTALAARITAFLDFL 290 >gi|288962593|ref|YP_003452888.1| transcriptional regulator [Azospirillum sp. B510] gi|288914859|dbj|BAI76344.1| transcriptional regulator [Azospirillum sp. B510] Length = 291 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 128/296 (43%), Gaps = 25/296 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR GSFT AA +L++SQ++ISR + LE +G LF R A L LTE+G Sbjct: 8 NGLRAFEAAARHGSFTAAAAELNVSQAAISRMVKLLEERLGFALFDRRANALVLTERGRA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L ++ + + ++E Q S+++ L + + L L F L +P+I+++ Sbjct: 68 LQPALTDAFDGI-ARRVE-QVSAMRAGPVLTVGMGATVAVRWLIPRLSGFHLDHPEIEVR 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + D+ CA+ L Q +L + + AP R P + Sbjct: 126 IATGGAGEPMKDDW-TCAVLLGNG-QWPGYEAERLFSSRLQPVCAPRLAAALRRPADLAG 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + +G+ P +WLA V + EP L +SY ++Q + G G+ L P Sbjct: 184 TTLLRVSHWGEDWP------HWLAAVG--VAEPASKGLSFSSYAMVLQAAIDGVGVGLAP 235 Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL--KAFR--NFIFLKARDW 297 L+ +D+ F + N+ L +AFR + F RDW Sbjct: 236 ---------LLYSQDDIAAGRLATPFGLAVPMVNSWYLVYRAFRREDAGFASFRDW 282 >gi|167571992|ref|ZP_02364866.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 304 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 133/294 (45%), Gaps = 14/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +GIKLF R RGLTLT G Sbjct: 13 NALRTFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGIKLFERLPRGLTLTADGLA 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S+V L + + VK + I+TT L L F +PDI I+ Sbjct: 73 YF---SDVQRALNLIG-DATDRLVKRRSSVTISTTPSFASRWLIPRLASFGDEHPDIDIR 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D++ D D AIR KP L+ R L + ++A +P L + S ++ Sbjct: 129 VIADSQFATFRSDGVDLAIRYGKPPFGKGLVTRFLFPVDIYAVCSPSLLTSPGALASPRD 188 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P+ + +D P PR + S L+I + G G+AL+ Sbjct: 189 LAGHVLLHDAHDLWPEFLAAMPERVAID-PHRGPRFN----QSSLAI-DAAIAGHGVALV 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 D +V + L R+ + + S + YP + + ++ AR Sbjct: 243 SDQLVGRDIEAGRLCRLFDFALPLSVGYHIVYPNEPRRPNDIATMEAWLIRHAR 296 >gi|116696405|ref|YP_841981.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113530904|emb|CAJ97251.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 310 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 11/278 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W +F V G FT AE + +SS S ++ LE ++GI+LF R R + +TE Sbjct: 3 TIEWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGIRLFERTTRRVRVTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +L+ + ++ +L E S + SG LRI+T ++G L +L L +P Sbjct: 63 RGQRLYERVAPLFAELHEISAEATSDSAEVSGLLRISTPYEVGSQHLSESLTRVLRAHPG 122 Query: 122 IQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +++Q+ + D D+ I Y + + +S +++V + YAAP +K Sbjct: 123 LRVQVDVSWDQPDL-IRHGYDLAFVMTDTALHDTSFASKRVVLVERAFYAAPALIKTRGL 181 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P + Q+L T G+ + E + R EPRI C N+ L ++ + G Sbjct: 182 PRTPQDL--QGWPTLGNADDRHWEFLRDGVEIARQDVEPRI-CTH-NAELR-LKAALDGL 236 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 G+ L V+D LVR++ + VY P Sbjct: 237 GVTRLSPRFVQDAVGQGQLVRVLPGYASSPLKVYVLMP 274 >gi|116050205|ref|YP_790978.1| transcriptional regulator PtxR [Pseudomonas aeruginosa UCBPP-PA14] gi|218891768|ref|YP_002440635.1| transcriptional regulator PtxR [Pseudomonas aeruginosa LESB58] gi|115585426|gb|ABJ11441.1| transcriptional regulator PtxR [Pseudomonas aeruginosa UCBPP-PA14] gi|218771994|emb|CAW27773.1| transcriptional regulator PtxR [Pseudomonas aeruginosa LESB58] Length = 312 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VA SFT AAE L LS+S +S Q+ LE ++GI+L R R +TLT++G Sbjct: 14 NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + +L+ ++++ +PSG+LRI D + + F+ +P +Q++ Sbjct: 74 LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D++ D+ D A+R+ P + S L KL A A P YL L + Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L + I L W T +R + L N+ L++ + + G+G++ Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +LP ++V LVR++ P +Y YP A +++AF Sbjct: 247 VLPSFLVAREIARGRLVRLLPGWRLPQGGIYALYPSARYMPVRVRAF 293 >gi|332140669|ref|YP_004426407.1| putative transcriptional regulator, LysR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550691|gb|AEA97409.1| putative transcriptional regulator, LysR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 299 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 144/301 (47%), Gaps = 22/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +S + L F V +GSF+ AA L+ + +SR ++ LE + + L R R L LT Sbjct: 4 VSSKTEDLEAFLTVVDTGSFSSAANLLNQQVAKVSRAVTRLEDTLDVTLLNRTTRRLELT 63 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + + + LE + L+ PSGKLR+ + L + +F +P Sbjct: 64 EEGELFLQYARDGLNVLEKGEEALRLLKRTPSGKLRVDAASPFVLHQLAPLVGDFREAFP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI + + + ID+ D AIR+ + S+L R+L +H A+P YL+ + P Sbjct: 124 DITLDITSHDSIIDLLEHKTDIAIRI-GDLSDSNLHARRLGKSKLHIVASPQYLE--KYP 180 Query: 181 LS-----IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 LS I L+KH LI F D P + W D + L+ +S +I Q C Sbjct: 181 LSENEGGISTLNKHKLIGFSD-SPSLNK---WPLKQDVNLQ----YSLRASSGETIRQLC 232 Query: 236 VLGSGIALLPDYIVKDNPN---LVRIM-EDVITPSF--TVYFCYPEALKNTGKLKAFRNF 289 + G GIALL ++V + + LV + +D+++P+ +V Y + + ++ AF +F Sbjct: 233 LAGQGIALLSHFMVHRDLSAGALVDVFSDDIVSPNRRESVQAVYYKNSAVSSRISAFLDF 292 Query: 290 I 290 I Sbjct: 293 I 293 >gi|187929830|ref|YP_001900317.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|187726720|gb|ACD27885.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 302 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 37/309 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ F V +GSFT AAE L + +S+ S +S LE +G++L R R L LTE Sbjct: 1 MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAGLGVRLMTRTTRQLRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + ++ +L + +S +G LRIA ++G L + L YP + Sbjct: 61 GSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPHL 120 Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 QIQ+ + + D+ D + + + + SSL+ R++V I YA+P L R PL Sbjct: 121 QIQVHISWEQPDLLASGFDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPALLAE-RPPL 179 Query: 182 SIQELDKHNLITFGDLIP-KCM---EDFNWLATVDRPIGEPRISCLQV---------NSY 228 T DL C+ +D +W RP+GEP + ++V N+ Sbjct: 180 K----------TPADLAGWPCLSGPDDASW---AFRPVGEPAVEPIEVPIQPRLQTLNAE 226 Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + V G G+A + + LVR++ D + VY AL KL Sbjct: 227 MR-ARAAVRGLGVARMARSVGDTEVAAGRLVRVLPDFELTALRVY-----ALMPARKLVP 280 Query: 286 FRNFIFLKA 294 + +FL A Sbjct: 281 RKVRVFLDA 289 >gi|209550444|ref|YP_002282361.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536200|gb|ACI56135.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 298 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 126/296 (42%), Gaps = 19/296 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A ++L ++Q+++S QI LE VG LF R R + LTE Sbjct: 7 FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC---RE 179 ++ + ID + + D IR L +L+ + +P ++ +E Sbjct: 124 AVRFQASSDIIDFTREQIDVGIRWGDG-NWPGLTLHRLMGLEFTPMLSPKLAESAGGIKE 182 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLG 238 P + +LD L GD+ K F D + PR Q+ S + G Sbjct: 183 PRDLLKLD---LFDAGDIWWKQW--FEAAGVTDTDLDRRPRN---QLGSQAVEADAAIAG 234 Query: 239 SGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A+L L R+ E + + YPE +N K+KAFRN+I Sbjct: 235 HGVAILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290 >gi|326794141|ref|YP_004311961.1| LysR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544905|gb|ADZ90125.1| transcriptional regulator, LysR family [Marinomonas mediterranea MMB-1] Length = 299 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 2/190 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L+VF GSF+ AA++L + + S I LE VG +LF R R + L+E G + Sbjct: 5 DDLKVFIYSVEEGSFSAAAKRLGSTPALASSAIQRLEKAVGARLFIRSTRTIRLSEDGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 LE + EL SG LRI+ DLG+N+L L++F YPD+ I Sbjct: 65 YLAHARAAIDALEAGERELNSKRDDISGTLRISAPSDLGRNVLLPWLQDFQDTYPDLSID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQ 184 L L + D+ D +D IR + SSLI LV + A+P YL+ P SI+ Sbjct: 125 LRLGDHISDLYKDTSDVGIRY-GVLGDSSLIALPLVPDNRRIVCASPVYLEQYGTPASIE 183 Query: 185 ELDKHNLITF 194 L +HN + + Sbjct: 184 ALRQHNCLLY 193 >gi|296101458|ref|YP_003611604.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055917|gb|ADF60655.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 299 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 20/260 (7%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 FD+ + VF V GSFT AA L + S +SR +S LE +G +L R R + LTE Sbjct: 5 FDYLGDVEVFITVVEHGSFTAAAVVLSTTPSVLSRAVSRLEARLGRQLLQRTTRRVGLTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + L+ + E + +G++R++ G L L F YP Sbjct: 65 AGRVYLEQARSAFALLDDAEREGRGQEGDLTGRVRMSVPTTYGHYRLPPLLARFAQHYPR 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q++L + N+++D+ + D AIRL + + S L+ RKL + A+P YL P Sbjct: 125 VQVELNITNRNVDLIAEGFDLAIRLGQ-LPDSGLVARKLEDAALLLVASPDYLHRMGSPQ 183 Query: 182 SIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 +++EL +H + F G + P D +WL I E L ++ Sbjct: 184 TLEELHRHTCLPFIMPRTGRIAPWVFRDEERDIDWLPGSTIEISE---------DVLGVV 234 Query: 233 QYCVLGSGIALLPDYIVKDN 252 G GI ++IV+D Sbjct: 235 SLAEQGMGICQSYEFIVRDR 254 >gi|78061372|ref|YP_371280.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969257|gb|ABB10636.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 297 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 3/239 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SFT AA QL +SQS++S I LET +G++L R R + TE G +L Sbjct: 9 LLAFIAVARERSFTRAAAQLGVSQSALSHTIRSLETRLGVRLLTRTTRSVAPTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++E L E +P+G +RI T + + LL L L Y D++++ + Sbjct: 69 LNLAPRFDEIEAELTALAELRDQPAGTVRINATDFVIRTLLWPKLAPVLRDYRDLKVEFV 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D DI + D +RL + + R + M AP Y P+S Q+L Sbjct: 129 NDYGLSDIVAERFDVGVRLGDQVAKDMIAVRISADMKMAIVGAPAYFAERARPVSPQDLV 188 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ I +P + W LA D + + N + + G G+A +P Sbjct: 189 AHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYETLDAALAGYGLAYVP 245 >gi|115359273|ref|YP_776411.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284561|gb|ABI90077.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 312 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 7/270 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SFT AA +L +SQS++S I LET +G++L R R + TE G +L Sbjct: 22 LLAFIAVARERSFTRAAARLGVSQSALSHTIRALETRLGVRLLTRTTRSVAPTEAGERLL 81 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++E L E KP+G +RI T + + LL L L Y D++++ + Sbjct: 82 QNLAPRFDEIEDELSALAELRDKPAGTVRINATDYVIRTLLWPRLSPILRDYRDLKVEFV 141 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D DI D +RL + + R + M AP Y P + Q+L Sbjct: 142 TDYGLSDIVAQRFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAEREPPATPQDLV 201 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+ I +P + W LA D + + N ++ + G G+A +P Sbjct: 202 AHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYEMLDAALAGYGLAYVPA 259 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCY 273 + + LV +++D P+F + Y Sbjct: 260 ELAAPHVEAGRLVSVLDD-WCPTFPGHHLY 288 >gi|328470190|gb|EGF41101.1| transcriptional regulator LysR family protein [Vibrio parahaemolyticus 10329] Length = 293 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F V + GSFT AA L L ++++SR+I LE +G +LF+R R L+LT +G Sbjct: 4 DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V L++ + S++ GK+++ + + LQ L EF YP +++ Sbjct: 64 YYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEP-LQPILFEFQDQYPQVELD 122 Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++N ID+ D A+ + S ++ RK++T+ A+P+YL+ P +++ Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL H I F P D W +P++ N+ I VL GI+ + Sbjct: 182 ELSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 P +VK ++ LV+++ T + YP+ Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPQ 270 >gi|317402802|gb|EFV83346.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 306 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 21/296 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F V AR SFT AA++L ++Q ++S+Q+ LE VG++LF R +GL LTE G Sbjct: 11 LQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAGRSYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++E +EL + G L + G L L F+ L PDI ++ + Sbjct: 71 TKIQAGLGQIEAATVELIAHQGQ-GGTLNLTCMPTFGARWLIPRLTAFMRLRPDIHVEFL 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLK-NCREPLS 182 + D S D A+R + I S ++ R+++ + +P + C P Sbjct: 130 PHRQGYDFSSPELDAAVRFGEGIWPGSGADYIVGREILPV-----CSPRLIPGGCSVP-- 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L + L+ + + F R + + + Y + Q G G+A Sbjct: 183 -ADLLAYPLLHHTSALEGWRDWFEQAGCDTR----RSLEGARFDQYALLSQAAAAGFGVA 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L+P +++D + L ++ I Y CYPE N L+AFR ++ +R Sbjct: 238 LIPRCLIEDELRDGKLAVAIQLPIRARMGYYLCYPEQKANLPTLQAFRTWLMEVSR 293 >gi|188535171|ref|YP_001908968.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis Et1/99] gi|188030213|emb|CAO98099.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis Et1/99] Length = 302 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 4/242 (1%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V + S+T AA+ L L++SS+S++IS LE +G KL R R + +TE G + Sbjct: 12 IFAKVVETLSYTEAAKTLGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVGMTYYHY 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +++++ + +++ +P+G LR+A + G + L F+ + + L L Sbjct: 72 CYRILNEVKSADLFIRQFHEEPTGSLRVAAPVTFGCQCIVPALNRFVAGNIHVSVDLDLT 131 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ ++ + D+ D AI + + + R L+ I YAAP YL N S +L +H Sbjct: 132 DRPVNFADDHIDLAIAITRDLPDHRH-YRPLMDIAWGLYAAPDYLLNRPAVTSPDDLARH 190 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I F P + + E R S + N+ ++++ V +GIA LP+YI Sbjct: 191 EFILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAQTGIAYLPNYIA 247 Query: 250 KD 251 ++ Sbjct: 248 RE 249 >gi|171318776|ref|ZP_02907915.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171096008|gb|EDT40939.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 301 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 26/253 (10%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D L +F VA SFT AAE L + + +S I LE +VG+ L +R R + LTE G Sbjct: 3 NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ ++ Q + + G+LR+ +L ++++ L + + +P+++ Sbjct: 63 RAFYSRARDLLADVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +D+ + DC IRL PI +LI R L + M A+P YL P ++ Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPIADDTLIARPLGKLRMTNAASPSYLARHGIPRTL 181 Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIM 232 +L H +T G P W + P G+ P S +QVN S+ Sbjct: 182 DDLRSQGHRMVHYTLTLGARHP------GW----EYPNGDGYASLPLPSAMQVN---SVQ 228 Query: 233 QYCVLG-SGIALL 244 Y G +GI L+ Sbjct: 229 TYHAAGLAGIGLI 241 >gi|254227300|ref|ZP_04920732.1| transcriptional regulator [Vibrio sp. Ex25] gi|262396433|ref|YP_003288286.1| transcriptional regulator [Vibrio sp. Ex25] gi|151939912|gb|EDN58738.1| transcriptional regulator [Vibrio sp. Ex25] gi|262340027|gb|ACY53821.1| transcriptional regulator [Vibrio sp. Ex25] Length = 307 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 65 FLDKTTQALATLQEGLEQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ + A+P Y+ E S + Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELTSPAD 184 Query: 186 LDKHNLITF 194 L +HN + + Sbjct: 185 LTQHNCLCY 193 >gi|312960818|ref|ZP_07775323.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311284476|gb|EFQ63052.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 300 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 17/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF A +GS + AA L L+ ++ S + LET +G +L R R + LTE+G Sbjct: 7 LEVFVRTADTGSLSAAARGLGLTPAAASIALKRLETRLGTRLLARSTRSMRLTEEGKHYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E L + L++ +G L++A D G+N++ G L EF +P+I++QL+ Sbjct: 67 DSVREALAALAEGEQALKQQGQGLTGLLQLAAPSDFGRNVVLGWLDEFKREHPNIRLQLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186 L++ + D+ D D A+R P + SSL+ +V H A A+P YL P + +L Sbjct: 127 LNDSNADLFRDTVDIALRFGIP-RDSSLVALPVVPGHQRIACASPDYLLRHGTPTTPAQL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGI 241 +H + + + + + W + E ++ YLS + ++ + G GI Sbjct: 186 AQHTTLRY---MRQGRANSTWFFCQGNDLQEVEVT----GDYLSDDGEIVRRWALAGHGI 238 Query: 242 ALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A + I +D LV+++ D P L+ + ++K F+ Sbjct: 239 AYKANLDIARDLKAGRLVQLLPDWQGEPTPFNLMCPHRLQVSERVKVLHRFL 290 >gi|222080941|ref|YP_002540304.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725620|gb|ACM28709.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 295 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 16/252 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ SF AAE + + S++SR+IS LE +G++L +R R + LTE G Sbjct: 5 NDMAMFVEVVKARSFRRAAETIGMPNSTLSRRISSLEKAIGLRLLHRTTRRIELTEAGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +L E PSG LR + +D L + EF YPDI + Sbjct: 65 YFERCKRIVDEARLAHEQLGEILTPPSGVLRASLPVDFALIYLAPLIAEFARRYPDIDFE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ ++ D AIR+ S+L+ +L + + YA+P YL+ EP + Sbjct: 125 FDLTPRRVDLVVEPFDVAIRMGGS-PDSNLMSWELACLPRYLYASPRYLELFGEPNEPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H + F + W TV+ G ++N I + L G Sbjct: 184 LIRHESLQF------PAQSGVWTLNHGHETVEVAAG----GRFRLNGVSMIRRLATLDLG 233 Query: 241 IALLPDYIVKDN 252 IA+L + IV D Sbjct: 234 IAMLAEEIVADE 245 >gi|239813250|ref|YP_002942160.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239799827|gb|ACS16894.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 298 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA GSF+ AA+ L ++ S+ SRQ+ LE E+G +L R R L LTE G + Sbjct: 4 FLRVAELGSFSAAADLLGMTPSAASRQVKRLEKEIGAQLIQRTTRQLRLTEPGVEALARC 63 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 E+ + Q S KPSG +RI+ + +L ++ +FL +P++ +QLI+++ Sbjct: 64 RELVLAAQGAMDVAQRFSKKPSGLVRISAPKAFARRVLHPHILDFLQRHPEVDVQLIVED 123 Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 +DID + D +RL KP + L+ R+L+ + A+P YL ++L H Sbjct: 124 RDIDPIREGVDLVVRLTTKPPE--GLVARQLMPVAHILCASPRYLAQGAAIAHPRDLLAH 181 Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDY 247 + ++ G+ D +W D E + V+++ + ++ + G G+A +P + Sbjct: 182 SCLSLGEH----ERDNHWCFRKGDEDEAEVVVRGRYVSNHSEVRLEAALAGLGVACVPAF 237 Query: 248 IVKD---NPNLVRIMED 261 + + + +++R++ D Sbjct: 238 MAQQALKDGSVMRVLAD 254 >gi|163740313|ref|ZP_02147707.1| probable transcriptional regulator [Phaeobacter gallaeciensis 2.10] gi|161386171|gb|EDQ10546.1| probable transcriptional regulator [Phaeobacter gallaeciensis 2.10] Length = 292 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 19/259 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F R SF AA++L ++Q ++++Q+ LE +G+ LF R +GL T G Sbjct: 8 NSLRAFDAAGRRLSFRAAADELGVTQGAVAQQVRQLEAHLGVVLFERVPKGLAFTSVGRS 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H ++V+ L + EL+ K+ I+ T L NL +F +P+I ++ Sbjct: 68 FHNRVADVFADLRSATAELKPEP----NKVLISVTPSFAAKWLIPNLPDFTAAHPNIDLR 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR---EPLS 182 ++ K D D A+R P +SL L + A AAP ++ EP + Sbjct: 124 IMATEKVSSFQSDGIDLAVRQGSPPFGASLDVTLLFKQTLIAVAAPSITRDAPHSFEPET 183 Query: 183 IQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L K H+ DL P ++LA +D P PR L+++ + + G G+ Sbjct: 184 LSKLPKIHDA---HDLWP------SYLAHLDVPDQSPR--GLRLSQTSLAVDAAIAGQGV 232 Query: 242 ALLPDYIVKDNPNLVRIME 260 AL+ ++V D+ + R++E Sbjct: 233 ALVSRFLVADDLEVGRLVE 251 >gi|117620686|ref|YP_856142.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562093|gb|ABK39041.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 300 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 21/292 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SFT AA QL +S + S+ + LE + +L R R + TE G + Sbjct: 7 MRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + +LE T +L ++ +P G L+++ +D G L L F YPD+++++ Sbjct: 67 QRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERYPDLKLEIE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ + + + D A+R+ + SSL+ + L + + A+P YL P + ++L Sbjct: 127 YSDRRVALVEEGFDLALRIGN-LPDSSLVAKPLAMMRLEVCASPAYLARRGTPNTPEDLK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +H+ + + P +W+ D RP G L+ N+ +++ + GI Sbjct: 186 QHDCLLYTLTQP------DWVFKRDGEQLSVRPQGP-----LRANNGVALTRAACDHQGI 234 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P +IV D + LV ++ + +Y YP + K++ F F+ Sbjct: 235 ILQPTFIVGDALRSGALVSLLPEWEKGQVGLYALYPHRRFVSAKVRCFIEFV 286 >gi|330949858|gb|EGH50118.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7] Length = 302 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 9/273 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA +GSFT AAE+L+L+ S++S+ ++ LE+ +G++LF R R L LTE+G+ H Sbjct: 10 IETFVAVANAGSFTAAAERLNLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + LE + L +P+G+LRI G+ + F + ++ ++ Sbjct: 70 TVCVRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 129 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D A+R+ P + + + R L T + AAP YL+ P + ++L Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPRVWPAGVAHRYLGTERVIFCAAPAYLQRYGTPHTFEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244 H I FG WL ++ E R + L + + + + GIA L Sbjct: 190 ASHACILFGR---GDGSTSPWLFVDEQGQREARAVEARLVIGNAEAQVAAVTSAWGIAQL 246 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 +++++ LV I+ + T ++ +P Sbjct: 247 ATWLIREQLQRGELVEILPQLATDGLALHLAWP 279 >gi|323698645|ref|ZP_08110557.1| transcriptional regulator, LysR family [Desulfovibrio sp. ND132] gi|323458577|gb|EGB14442.1| transcriptional regulator, LysR family [Desulfovibrio desulfuricans ND132] Length = 297 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL----HRV 69 VAR SFT AAE L + S++SR+I LE +G+ LFYR R + T+ G+ L + Sbjct: 15 VARRKSFTKAAETLGMGVSTLSRRIKLLEERMGVLLFYRDTRNVEPTDNGAYLLDRCGYI 74 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQLIL 128 EV + ++ + +Q KP+G +RI +DL + + L +F + +PDIQ+ L Sbjct: 75 LDEVQNAYDSVVLNMQ----KPAGLIRICMFLDLYDDRPFKDALMDFAVKWPDIQMDLTF 130 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +D+ D D A L P + LI RKL+TI YA+P L+ PL +L + Sbjct: 131 VEHPVDMRTDPFDVAF-LIGPSIALPLIARKLLTIEPFLYASPALLERYSMPLEPGDLRR 189 Query: 189 HNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 I FG+ P M D TV+ +P+ S S ++ + G G+ALL Sbjct: 190 LPCIVLQRFGNRWP--MHDGTRQVTVEV---QPQYS---FGSVEMCREFALAGHGVALL 240 >gi|298290356|ref|YP_003692295.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296926867|gb|ADH87676.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 304 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 132/291 (45%), Gaps = 14/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GS T AA L ++Q ++++ + LE VG +L R AR + T QG+ L+ Sbjct: 7 LRAFVRTVERGSVTAAARDLAVTQPAVTKHLRNLERHVGARLLERSARLVRPTPQGAALY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ ++ G LRI LG L G + EF +P + + LI Sbjct: 67 ETSRSALASIDSALEGVRRDMGAIEGTLRIHAPACLGARRLHGIVMEFQAAHPGVNVDLI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+N+ +D+ + D A++ +P + L+ R+L + AAP +L C +++ L Sbjct: 127 LENRSVDLVYENLDLAVKYGRP-EGQDLVIRRLGLVRRVLVAAPSFLARCGPVDTLERLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243 + +++T ++ D L P+GE P L+ N+ +++ +LG G A Sbjct: 186 EVDIVTTPAVV--SPRDMLMLQRAGTPLGESIEVPVRPVLRTNAA-EVIEQTLLG-GHAA 241 Query: 244 LPD---YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 P + +D LVR++ + + YP ++AF +F Sbjct: 242 GPVQVLFAARDLAAGRLVRLLPEYEVRPSEAFLAYPSVRFMRPVVRAFTDF 292 >gi|77360330|ref|YP_339905.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76875241|emb|CAI86462.1| Transcriptional regulator, LysR family [Pseudoalteromonas haloplanktis TAC125] Length = 317 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 120/276 (43%), Gaps = 17/276 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F V GSFT A + + LS + ISR +S LE + +L R R + LT++G Sbjct: 31 WDGIDEFIAVGEEGSFTAAGKAIGLSVAHISRHVSALEQRLNTQLLTRTTRKVVLTKEGE 90 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + H ++ L + P GK+ + + G++ + + F+ +PD+++ Sbjct: 91 VFLHQIKHLQHAMDDATQSLAQQQSTPKGKINLTAPVMYGESFIMPIVHNFMHDHPDVEV 150 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L N+ ++ D AIRL ++ SSL R+L AP YL EP ++ Sbjct: 151 VATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSARRFIMCCAPDYLTRFGEPHTLG 209 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241 EL H +C+ + V+ E I LQ NS +++ G GI Sbjct: 210 ELINH----------QCLVGNSRYWRVNEGGREKHIKIAGRLQCNSGWALVDGAKKGLGI 259 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 LP+Y +++ LV I+ V+ YP Sbjct: 260 IQLPNYYIENELKTGQLVPILTSYQPLQEGVWGVYP 295 >gi|15597454|ref|NP_250948.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PAO1] gi|107101704|ref|ZP_01365622.1| hypothetical protein PaerPA_01002748 [Pseudomonas aeruginosa PACS2] gi|254235274|ref|ZP_04928597.1| transcriptional regulator PtxR [Pseudomonas aeruginosa C3719] gi|313110849|ref|ZP_07796697.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 39016] gi|17380253|sp|P72131|PTXR_PSEAE RecName: Full=HTH-type transcriptional regulator ptxR gi|9948285|gb|AAG05646.1|AE004651_8 transcriptional regulator PtxR [Pseudomonas aeruginosa PAO1] gi|13655591|gb|AAC26481.3| PtxR [Pseudomonas aeruginosa PAO1] gi|126167205|gb|EAZ52716.1| transcriptional regulator PtxR [Pseudomonas aeruginosa C3719] gi|310883199|gb|EFQ41793.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 39016] Length = 312 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VA SFT AAE L LS+S +S Q+ LE ++GI+L R R +TLT++G Sbjct: 14 NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + +L+ ++++ +PSG+LRI D + + F+ +P +Q++ Sbjct: 74 LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D++ D+ D A+R+ P + S L KL A A P YL L + Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L + I L W T +R + L N+ L++ + + G+G++ Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +LP ++V LVR++ P +Y YP A +++AF Sbjct: 247 VLPSFLVAREIARGRLVRLLPGWRLPQGGIYALYPSARYMPVRVRAF 293 >gi|313498457|gb|ADR59823.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 306 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 8/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + GSF A QL + +S+++S LET +GI+L R R L T++G + Sbjct: 10 DELATLLALYEQGSFAAAGRQLERHPTVLSKRLSALETRLGIRLVERSTRQLRFTDEGER 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L E + + E E + G+LR+A +G+ L G L +F+L YP + ++ Sbjct: 70 LVAKVLEASRLIAEAEEEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVIVE 129 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +D+ + D AIR+ + + + L+ KL A+P YL EP ++ Sbjct: 130 TEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGEPAQPED 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HN + F L + ++ L + R L+ N ++++ G GI Sbjct: 189 LAAHNCLGFNGL--RSFPEWR-LMSDTRQTSVKVAGSLRSNDNEALLEAARRGVGILAGG 245 Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+++ ++ LVR++ + + +Y P A NT + F+ ++ Sbjct: 246 DWLMCEDLASGCLVRVLAQWQLDKAAGIYLVRPTARLNTAAMGVFKAWL 294 >gi|269966161|ref|ZP_06180251.1| Transcriptional regulator, LysR family [Vibrio alginolyticus 40B] gi|269829308|gb|EEZ83552.1| Transcriptional regulator, LysR family [Vibrio alginolyticus 40B] Length = 295 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 29/305 (9%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +L+ + S+IS+++ LE ++G++L R R ++ TE Sbjct: 1 MDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ ++ ++ E + + P+G L+I T+ +G L L +FL YPD Sbjct: 61 AGALFYQRAKSQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120 Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I +QL L + ++S+D R + + S S L YAAP YLK Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYGT 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-- 237 P +++L +HN++ +G+ R I R + ++ + L Sbjct: 179 PQCVEDLTEHNVLIWGE-------------KPSREIKTNRGKRISLSGNFATTNPEALFH 225 Query: 238 ----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI + + ++KD+ LV I+ D+ VY YP+ + K F + Sbjct: 226 GAKRGMGILMTNNVMIKDDLKSGALVPILPDITADKAIVYAYYPKLDYQHTRTKLFLD-- 283 Query: 291 FLKAR 295 +LK+R Sbjct: 284 YLKSR 288 >gi|260433865|ref|ZP_05787836.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417693|gb|EEX10952.1| transcriptional regulator, LysR family [Silicibacter lacuscaerulensis ITI-1157] Length = 300 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 11/298 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ +WD +RVF VAR S + A +L + +++ R+I+ LET + LF + +G LT Sbjct: 1 MTPNWDDMRVFLAVAREESLSSAGRRLKIDPATVGRRIARLETALKAPLFTKSPQGYLLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + + S+ SG++RI LL P Sbjct: 61 SAGERLFEHAQSAEEAMRAAAGAMDGSTKALSGQIRIGAPDGSANYLLPQVCARISDANP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ IQ++ + I++S AD A+ + P L+Q K+ +H A YL Sbjct: 121 DLDIQILALPRIINLSRREADMALTVSAPTAGKLLVQ-KVSDYCLHMVATEDYLARHAPI 179 Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 ++ +L H +I + IP + D ++L IG R++ L NS ++ LG Sbjct: 180 RTLNDLRGHRMIGY---IPDMIFDRELDYL----NDIGIDRVA-LASNSVSVQLRQASLG 231 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +G+ + D+ + +P L +I+ D ++ + + Y + + +L F + RD Sbjct: 232 TGVCVAHDFTLPFHPGLRKILTDQVSLTRSFYLVRHQGDQRNERLNRFAKALSQGIRD 289 >gi|197337480|ref|YP_002158016.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] gi|197314732|gb|ACH64181.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11] Length = 310 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 128/267 (47%), Gaps = 27/267 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VV GSFT AA++L ++ S++S+ I+ LE + +KLF R R L +TE G K++ Sbjct: 13 LATFIVVVNEGSFTAAAKKLGVTPSALSKLITRLENALSVKLFERTTRSLLITESGKKIY 72 Query: 68 RVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +E Q + SS + PSG L +A +LQ + FL YP IQ+ Sbjct: 73 Q---QSVIMIEAAQQAVDISSSEHTVPSGSLTVAAPKAFLTIVLQPLITPFLTKYPKIQL 129 Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +L + DID+ D RL KP + L+ +++ +++ A+P YL+ P Sbjct: 130 KLRASDGDIDMIAQGIDVVFRLTDKPTE--GLVMKEIGKVNLSLCASPTYLEERGIPHLP 187 Query: 184 QELDKHNLITFGDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 QEL H+ + G+ + +F + +A R VN + Sbjct: 188 QELANHDCLFLGETTTDHIWEFVKGTESHVIAVSGR---------YAVNHSQMRLNGVKD 238 Query: 238 GSGIALLPDYIVKD---NPNLVRIMED 261 G GI + PD+++K+ N ++ ++ D Sbjct: 239 GFGIGIFPDFVIKEALANNEVISVLSD 265 >gi|167567601|ref|ZP_02360517.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] gi|167569115|ref|ZP_02361989.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 320 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 2/190 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ I LET +G++L R R L LT +G+ Sbjct: 7 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFIQRLETRLGVRLLNRTTRKLQLTPEGA 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E + P G++RI + + G+ L L EF YP+I + Sbjct: 67 AFYERCVRILEDIADAEREATRGA-SPQGRVRINSHVPFGKRHLMPLLPEFQRRYPEITL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D+ D +D AIR P S L+ RKL M +P Y + P + Sbjct: 126 DIVLSDAVVDLLDDRSDIAIRSGAP-DDSRLVMRKLGGSRMVVVGSPAYFERWGVPETPD 184 Query: 185 ELDKHNLITF 194 +LD+H+ I Sbjct: 185 DLDRHHCIGL 194 >gi|91223158|ref|ZP_01258424.1| transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] gi|91191971|gb|EAS78234.1| transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] Length = 307 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 65 FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ + A+P Y+ E S + Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELASPAD 184 Query: 186 LDKHNLITF 194 L +HN + + Sbjct: 185 LTQHNCLCY 193 >gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075972|gb|ADJ65371.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 18/290 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A +GSF+ AA QL L+ +++ + ++ LE+ +G++LF+R R L+LTE G + + Sbjct: 10 FVAAAHAGSFSAAARQLGLTSAAVGKNVARLESSLGVRLFHRSTRKLSLTEAGERFLQEV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + L + +P+G L+++ G+ + L EFL YP IQ +N Sbjct: 70 GGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFEN 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDKH 189 + +D+ + D AI + S ++ R+L H A+P YL + PL S +L +H Sbjct: 130 RPVDLISEGFDAAIAGGTEL-SPGVVARELAPAHRVLLASPAYL-DAHPPLHSPADLAEH 187 Query: 190 NLITF-----GDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243 I G + P + D + P+ + R++ N+ + + LG + Sbjct: 188 AGILIRSPQTGRVRPFSLRDRSGQ---QAPVTLQQRMTMSDANAACEVAE-AGLGITLVA 243 Query: 244 LPDYIVK-DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P + + LVR++ D V T ++YF L K + F +F+ Sbjct: 244 MPHALPYLEGGTLVRVLPDWYVDTGMLSLYFTAARLLP--AKTRVFVDFV 291 >gi|28901444|ref|NP_801099.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308094987|ref|ZP_05892639.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308095347|ref|ZP_05905163.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308125561|ref|ZP_05775866.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] gi|28809991|dbj|BAC62932.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus RIMD 2210633] gi|308085408|gb|EFO35103.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308092638|gb|EFO42333.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308112321|gb|EFO49861.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] Length = 307 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 65 FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ + A+P Y+ E S + Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELTSPAD 184 Query: 186 LDKHNLITF 194 L +HN + + Sbjct: 185 LTQHNCLCY 193 >gi|260775781|ref|ZP_05884677.1| transcription regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260608197|gb|EEX34366.1| transcription regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 299 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 13/288 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +SFDW++ R F A GS + AA L+++Q ++SRQ+S LE E+G+ LF R A+ LTLT Sbjct: 6 ISFDWNRTRAFLATAELGSLSAAAHSLNVTQPTLSRQVSALEQELGVALFERSAQKLTLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + E+ + S +G + ++ L L + + P Sbjct: 66 RSGIELLHIAREMGDVAHKFSMVASGQSEDLNGVVALSVCQLDAMYRLPPILAKLRRVEP 125 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I L++ N+ D+ AD A+R +P Q SLI +KL + Y YL E Sbjct: 126 KLSIDLVVTNQVSDLKRRDADIALRSVQPTQ-PSLIAKKLGEERVSLYGTRAYLTPFLEA 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 SI+++ + +I FG P M F+ W + E L + + + C Sbjct: 185 QSIEDVPELQIIGFGHNGP-IMTQFSHQGW------SLNEKNFK-LSTDFQPAQLALCKQ 236 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLK 284 G+ LP+ I P L+R + + T ++ E LK +++ Sbjct: 237 HLGVMYLPEDIAAQEPQLMRAPDGLFPTMQLPLWLVCHEELKTNRRVR 284 >gi|168819073|ref|ZP_02831073.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343968|gb|EDZ30732.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084607|emb|CBY94398.1| HTH-type transcriptional activator ttdR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 321 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR+G F AA +L LS S IS++I+ LE + +LF+R+ R + LT +G Sbjct: 21 EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +++ L +G + I + G + L F++ YPDI ++ Sbjct: 81 ALCGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D IR+ I + I R+L T A+P YL+ +P S+ Sbjct: 141 LTLTDREVDLVEEGVDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVST 199 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 L +H+ + +I + F NW+ T + R++ NS ++ + + G GI L Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255 Query: 244 LPDYIVK---DNPNLVRIM 259 ++ V + LVR++ Sbjct: 256 RSEWDVAQYIERGELVRVL 274 >gi|115345623|ref|YP_771805.1| LysR family transcriptional regulator [Roseobacter denitrificans OCh 114] gi|115292944|gb|ABI93397.1| transcription regulator, LysR family, putative [Roseobacter denitrificans OCh 114] Length = 304 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 19/256 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D LRVF VA SF AA+ L+++ ++++R ++ LE E+ +L R R ++LT G Sbjct: 3 DLKPLRVFLEVAAQESFVRAAKALNMTPATVTRIVAKLEEELDRQLLLRTTRHVSLTSYG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + V + EL + + G+L I + G L+ G ++ F L YP+I Sbjct: 63 ALVAARYRPVVEAFDQVGEELTQDTQPFRGRLSINVPMSFGLRLMPGLIQSFRLAYPNID 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + ++ +D+ + D A+R+ P + S I RK+ I A+ +L P Sbjct: 123 LVVRMTDRLVDVMAEECDLAVRISNPPEDKSTIWRKVCEIPRKVVASKAFLDRTTRPEHP 182 Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRI-------SCLQVNSYLSIMQYC 235 +LD++ +++G D+ P+ +W P+ + + + L N+ ++ Sbjct: 183 DQLDRNFCLSYGHDVEPE-----SW------PLHKAGMKNTFTAGTALVSNNGDVLLTMI 231 Query: 236 VLGSGIALLPDYIVKD 251 +GI LLP++I D Sbjct: 232 QRDAGIVLLPEFIAAD 247 >gi|324999506|ref|ZP_08120618.1| LysR family transcriptional regulator [Pseudonocardia sp. P1] Length = 304 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 12/293 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F + R G T AAE++ + ++I R+IS LE +G +LF + RG T T G + Sbjct: 4 DDLRYFLELTRYGRLTVAAERMGVEHTTIRRRISALERGLGQRLFDKTPRGWTPTAAGRR 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + + + P G +RI T G ++ L +P IQ++ Sbjct: 64 LLPYAQRIEAEADAARGAVTDDGHSPRGTVRIVATDGFGGAVIAPGLSRLRRAHPGIQVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLS 182 L+ + +D + D A+ + +P + I+ L + Y +P YL R+P Sbjct: 124 LVTKSHLLDYGVGEFDLAVTIHRPERPGFRIE-HLCDYDLRLYGSPAYLAARSRIRQP-- 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H+L+ F + D L + + + + N + + + G G+ Sbjct: 181 -RDLADHDLVWF----VASLLDLPELQSAEDIAAQANVVFRTTNLFAQV-EAAAGGVGLG 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 L+P ++ + L ++ D ++ T + P L NT ++ I AR Sbjct: 235 LVPCFLAHGDDRLRPVLHDQVSARRTFWVITPNRLLNTERIAIVAEHIAETAR 287 >gi|307131282|ref|YP_003883298.1| putative lysR-family transcriptional regulator [Dickeya dadantii 3937] gi|306528811|gb|ADM98741.1| putative lysR-family transcriptional regulator [Dickeya dadantii 3937] Length = 296 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GS T AA +L +S+S +R I+ LE +G++L +R R L LT G+ + Sbjct: 7 MQVFVDVADLGSLTAAANKLDMSRSMATRYIASLEHWLGVRLLHRSTRSLGLTSAGNDML 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E +P G +RIA+++ GQ L L + YP +LI Sbjct: 67 VRCRQILALSEDMAALSGHGDTEPHGVIRIASSVSFGQFYLSPALSRYRARYPHTTTELI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ I + + D +I + +LI + L AAP YL P++ +L Sbjct: 127 LTDRAIKLVEERIDLSIDVTN-TPDHNLIAKPLGHCASVVCAAPDYLARHAHPVTPNDLI 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243 +H+ + L W T R G P + N L ++ G G+A Sbjct: 186 RHDCLNHTRL------GREWFFT-HRENGAPHRVMVAGRVIANDTLVLLNAARAGEGVAC 238 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+++ + + L ++ D T + +Y CY L+ +F+ Sbjct: 239 LPEFVARAGLEAGELTPLLPDYQTQALGIYACYVSRRHMPATLRTLLDFL 288 >gi|296160294|ref|ZP_06843112.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295889505|gb|EFG69305.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 309 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 6/245 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + + S+T AA+ L LS+S++S++I+ LET +G+ L R R + +TE G + Sbjct: 10 MAIFAKIVETNSYTEAAKLLGLSKSAVSKEINRLETGLGVTLLKRTTRKIEVTEIGRTYY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ +++ +P G LR+ + G + L F+ +Q+ L Sbjct: 70 EYCARLLAEVRGADAFVRQYHEEPIGNLRVVAPMTFGNRAVLPALCRFISNNIHVQVDLE 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D++ D AI + + + +QR L IH YA+P YL + ++L Sbjct: 130 LTDRVVDLNDQNVDVAIVINRDKPEEATVQR-LAEIHWGIYASPTYLASHPPVQGPEDLS 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H + FG P L R + E R+ C L+ N+ ++++ + G GIA LP Sbjct: 189 RHGFLLFGG--PAHTTSLQ-LRYGKRQL-ETRVRCVLRSNNSVALLYAAIDGIGIAYLPR 244 Query: 247 YIVKD 251 Y+ ++ Sbjct: 245 YVARE 249 >gi|295097319|emb|CBK86409.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 295 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 21/295 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA +GSFT AAE + L+++ +S I LE E+G+ L R R LTLTE G H+ Sbjct: 9 MFIAVADTGSFTAAAEAMGLTKAVVSFHIRQLEEELGVTLLLRTTRRLTLTEAGKLFHQR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + E Q +++ + +G+LRI TT + G ++ L EF L+PD++++ + Sbjct: 69 SVMLLRDAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQLHPDLRVRHVSS 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDK 188 + D+ + D AIRL + S + + + A P +L N P+ S+++L + Sbjct: 129 SLHADLIAERFDVAIRL-GTLADSRYHAALMTSFTILPVATPGWLAN--HPVDSLEQLAE 185 Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEP------RISCLQVNSYLSIMQYCVLGSGI 241 + I + + W + VD G+P + L +S ++M + + G G+ Sbjct: 186 ADWI----IHERLTSPLRWQMRGVD---GQPVSFEIKKAPRLYADSAQALMAFALAGCGV 238 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ALLP+++V+ D LV ++ +Y YP+A K++ F +F+ ++ Sbjct: 239 ALLPEWLVRNALDAGELVSLLPAYTFAQQGIYAVYPDARHVPAKVRTFIDFMRVR 293 >gi|332086718|gb|EGI91858.1| HTH-type transcriptional activator ttdR [Shigella boydii 5216-82] Length = 310 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLSRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWVLEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|167835763|ref|ZP_02462646.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 303 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 2/190 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ VF V S F+ A +L ++ S+IS+ + LET +G++L R R L LT +G+ Sbjct: 7 FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + E ++ P G++RI + + G++ L L EF YPDI + Sbjct: 67 AFYERCVRILEDIADAEREAMHGAI-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + +D + +D AIR + S L+ R+L M +P Y + P + Sbjct: 126 DIVLSDAAVDPLDNRSDIAIR-SGALDDSRLVMRRLGGSRMVVVGSPAYFERNGVPATPD 184 Query: 185 ELDKHNLITF 194 +LD+HN I Sbjct: 185 DLDRHNCIGL 194 >gi|330011025|ref|ZP_08306952.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|328534314|gb|EGF60926.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 299 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 14/300 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR G+ + AA +L ++ S+S + LE +G LF R R + LTE G Sbjct: 6 YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T+ LE + +++ + +PSG +RI + +L+ + F YP IQ+ Sbjct: 66 QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + + ++I + D IR ++ + + + YA+ YL P Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAMPA 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H LI + ++P + D TV+ P L N + G Sbjct: 186 DLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI L + I++ P+ + +MED VY YP+ T ++KA +F+ + A + Sbjct: 240 GIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMHAAE 299 >gi|310815893|ref|YP_003963857.1| transcriptional regulator LysR family precursor [Ketogulonicigenium vulgare Y25] gi|308754628|gb|ADO42557.1| transcriptional regulator LysR family precursor [Ketogulonicigenium vulgare Y25] Length = 299 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 9/272 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V +G F AA +LHLS S++++ I+ LE +G+ LF R R L LT++G+ Sbjct: 6 DDIGIFLAVCDAGRFAGAATRLHLSPSAVAKAIARLEARLGVTLFARSTRRLALTDEGAI 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ T+ L+ P+G LRI+ G ++ L +P +Q+Q Sbjct: 66 YAETCRQARAEIDRTEGMLRALHSTPAGLLRISLPPLFGAEVIAPALFSLTDDWPLLQLQ 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + D+ D A+R+ P + + R++ T + A+ Y+ P + + Sbjct: 126 IDTSTQRNDLIGAGIDFAVRIGAPPPLAGITARRIGTQRVMLCASADYVAARGVPRRLAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H LI +P + + T+ P G L ++ L + G GI ++P Sbjct: 186 LGAHRLIAMPQGMPWQFSAQDHVETL-LPAGP-----LHLDGSLLTRAAIMAGHGIGMVP 239 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 ++++D +V ++ + +T +Y +P Sbjct: 240 AWLMRDALAARQVVAVLPEALTGDLPIYALWP 271 >gi|307293670|ref|ZP_07573514.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] gi|306879821|gb|EFN11038.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] Length = 302 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 116/247 (46%), Gaps = 13/247 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F VA GSFT AAE L +++ S + LE VG++L +R R + LTE G Sbjct: 3 DLEPLLIFTRVADMGSFTRAAESLGIAKGRASTAVRDLEAAVGVRLLHRTTRNVQLTEDG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 H ++ + G+LR+ ++ + + L FL+ YPD++ Sbjct: 63 RAFHARARDLLAASDDLYSMFAGDRAALRGRLRVDLPTEIARTAIMSALPTFLVAYPDLE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +D+ + DC +R+ P+ +L+ + + M A+P YL P S Sbjct: 123 LELSSTDRQVDLVQEGFDCVLRI-GPVGDETLVALPVGKLRMVNVASPAYLARHGVPRSF 181 Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL---SIMQYCVLG 238 ++L +H ++ + + + + W + P G R + + ++ L S+ Y G Sbjct: 182 EDLMRQQHRMVHYSRTL--GAKPYGW----EYPDGNGRYATVPLSGALHVNSVQTYEAAG 235 Query: 239 -SGIALL 244 +G+ L+ Sbjct: 236 LAGVGLI 242 >gi|301165804|emb|CBW25376.1| putative lysR-family transcriptional regulator [Bacteriovorax marinus SJ] Length = 299 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +VA + SF AAE L++S +ISR IS LE +G+ L R R + TE G Sbjct: 7 DGLVALKLVAENKSFKKAAEILNISTPAISRIISNLERRMGVILLTRTTRNVNPTEAGIT 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ Q ++ +PSG LRI + Q+ L+ ++EFL YP +Q++ Sbjct: 67 FLNKAGPAIDEIIDAQSSVRTLGNEPSGLLRINAPVIFYQHYLKDYVREFLKKYPKVQLE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D++ +DI D IR+ I + + I A+P Y+K P +E Sbjct: 127 IFSDDQAVDIFSQGFDAGIRVDDIIAKDLIALKLFGPIDFITVASPKYIKEFGSPSHPKE 186 Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 L HN L+ FG + D W + R++ L +N+ I Q + SGI Sbjct: 187 LLDHNCILLRFGS--GTSVYD-KWEFEDKKKEFTVRVNGNLILNNSEHIRQAALSHSGII 243 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V ++ L ++E+ T S Y YP + + L+AF NF Sbjct: 244 YIEKGSVINDLERGKLKVVLEEYKTQSTGFYLYYPHKIHISPALRAFINF 293 >gi|294011961|ref|YP_003545421.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292675291|dbj|BAI96809.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 313 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 9/284 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F VA GSF AA QL LS S ++R I+ LE +G+ L R R + LT++G Sbjct: 5 DTMRAFVTVATVGSFAEAARQLRLSPSVVTRSIADLEDWLGLILLNRTTRSVRLTDRGEI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +E + ++ +P G L++A I G+ + + L +P + + Sbjct: 65 FLDSCRQVLEDIEGAERRVRGEDAEPRGALKVAAPILFGRLHVLPIITRILTKHPSLTVH 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L +++I ++ + D A+R+ + SS+ +L ++ A+ Y++ P + + Sbjct: 125 LTLSDRNIHLAEESVDVAVRV-GDLADSSMKAIRLGSVSRVLVASRRYVERRGMPKAPND 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H++I F L F V R EPR L VNS + + G GI+ Sbjct: 184 LSAHDIIAFESLDATNEWRFGPSGKVVRV--EPR---LTVNSADAAIAAAEAGLGISRTL 238 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y V D+ LV ++ V YP + L AF Sbjct: 239 SYQVMDSVLAGRLVPLLVSFTAEKLPVSAIYPARRIASTNLGAF 282 >gi|218660834|ref|ZP_03516764.1| probable transcriptional regulator protein, LysR family [Rhizobium etli IE4771] Length = 262 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 4/189 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V G F+ AA ++ S++S+ ++ LE +G++L R R L LT +G Sbjct: 11 EMEIFVSVVERGGFSAAATVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + E Q SS + +G++RI T+ G ++L + F+ L+P + + Sbjct: 71 YERSIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +K ID+ + AD AIR P++SSSLI RKL A+P YL EP ++ + Sbjct: 129 IAHTDKVIDLMEERADVAIRA-GPLKSSSLIARKLGATGKIIVASPDYLGRHGEPRTLAD 187 Query: 186 LDKHNLITF 194 L +H I F Sbjct: 188 LRRHCRIGF 196 >gi|187925301|ref|YP_001896943.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187716495|gb|ACD17719.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 327 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A+ GS + A ++ L+ ++ S +++ LE + +LF R R L LT++G Sbjct: 7 IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKTRLFERTTRQLRLTDEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + LQ GK+R++ T D G+NLL L EF LYP++ L Sbjct: 67 NCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AIR P Q SSL+ RKL A+P Y+ EP D Sbjct: 127 LSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPDYIARKGEP-----KD 180 Query: 188 KHNLITF 194 H+L F Sbjct: 181 PHDLANF 187 >gi|27381047|ref|NP_772576.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354213|dbj|BAC51201.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 307 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++VF + GS A +L S +++SR I+ LE VG +L +R R + L+E+G + Sbjct: 5 DAMKVFVLAVDEGSLAAAGRKLGRSPAAVSRAIAFLEERVGAELLHRTTRSIKLSEEGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V +LE P G L I + G+ +L+ L FL YP + + Sbjct: 65 YVAICRRVLTELEEADDIAAGPRAAPRGLLTITAPVVSGEMVLRPILDAFLDAYPTVSAK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ +++ + D A+R+ + S+++ ++ I AAP YLK + + Sbjct: 125 LLLFDRAVNLIEEGVDIALRIGH-LADSAMVAMRIGEISRVVVAAPRYLKQHPRITELGD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALL 244 L KH ++ L ++ R + PR L VNS + + V G G+A + Sbjct: 184 LAKHQIVAMAHLPNSWTFAPQAGSSAARTVQFTPR---LVVNSTYAAVASAVAGRGVARM 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y V + L ++ P + P+ + K++AF +F Sbjct: 241 YSYQVAEQVARGELEIVLAADQDPEMPAHLICPQGRLSVPKVRAFTDF 288 >gi|89074526|ref|ZP_01160998.1| hypothetical D-serine deaminase activator [Photobacterium sp. SKA34] gi|89049630|gb|EAR55189.1| hypothetical D-serine deaminase activator [Photobacterium sp. SKA34] Length = 301 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F + A SFT AAE L L+QS++S +I LE +G++LF R R L LT++G L Sbjct: 14 LHCFLIAAEQMSFTRAAEVLFLTQSAVSHKIKNLEEALGVQLFIRQPRKLILTDEGLLLK 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V + + + +L+ +V+ SG + I+ Q L LK F+ LYP ++I L Sbjct: 74 QVLAANFGDIAHEIRDLK--NVELSGDINISVPPTFAQTWLLPRLKSFIDLYPMLRIHLR 131 Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 N+ +D + DCAI K + S L+ + + H YA + L + E L + Sbjct: 132 TRNELVDFQTESFDCAIYFGKGEYQGLHSCKLMDEAMQPVCSHDYAIANDLYDNPEGL-M 190 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242 Q L H+ + + + W ++ + P C S L+ +Q G G+A Sbjct: 191 QCLLLHDAAPWA----RAGRNDEWQLWAEQYGTQLPGSECTFDRSDLA-LQAAECGIGVA 245 Query: 243 LLPDYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291 + + + R++ D++ PS F+ Y ++NT K+KAF +++F Sbjct: 246 MGRHSFIAEKLVEKRLVTPFDMMAPSPFSYYVVCRHNMQNTPKIKAFSDWLF 297 >gi|332998662|gb|EGK18258.1| HTH-type transcriptional activator ttdR [Shigella flexneri VA-6] Length = 333 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 9/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V ++ LV+++ + S ++ Y E L + K + NF Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKFVSAWNF 291 >gi|238896421|ref|YP_002921159.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238548741|dbj|BAH65092.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 299 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 14/300 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR G+ + AA +L ++ S+S + LE +G LF R R + LTE G Sbjct: 6 YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHSLFVRTTRRIELTETGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T+ LE + +++ + +PSG +RI + +L+ + F YP IQ+ Sbjct: 66 QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + + ++I + D IR ++ + + + YA+ YL P Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAMPA 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L H LI + ++P + D TV+ P L N + G Sbjct: 186 DLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239 Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI L + I++ P+ + +MED VY YP+ T ++KA +F+ + A + Sbjct: 240 GIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMHAAE 299 >gi|90413646|ref|ZP_01221635.1| hypothetical transcriptional regulator protein, LysR family protein [Photobacterium profundum 3TCK] gi|90325267|gb|EAS41761.1| hypothetical transcriptional regulator protein, LysR family protein [Photobacterium profundum 3TCK] Length = 211 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 12/196 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F+ + +GS A+E L +S+ISR+I LE E+ I LF+R R L LTE G+K Sbjct: 4 EDLKLFHQIVDTGSLNRASEIFDLPKSNISRRIKSLEEELNILLFHRQNRALQLTEAGTK 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120 + T + LE + E+ + + SG LRI +D+G+ + F+ +YP Sbjct: 64 FYTKTKAMLIDLEASIQEITAPTYEVSGHLRIQLLPFPEILDIGRMIFT-----FMDMYP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 I +++I +D ++ ++ D A+R+ K ++ SSL+ R + P Y++ Sbjct: 119 KISVEIITSAEDKNMVENHIDIALRVAEGKTLEDSSLVARPFKHASFGFFCTPEYVEQHG 178 Query: 179 EPLSIQELDKHNLITF 194 P + +L K N+I F Sbjct: 179 MPQTADDLRKLNVIRF 194 >gi|319427671|gb|ADV55745.1| transcriptional regulator, LysR family [Shewanella putrefaciens 200] Length = 302 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA GSFT AA+ L LS+ +SR I +E + ++L +R R ++LT QG + Sbjct: 7 IRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEETL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + + G +RIAT I LGQ+ L + F+ L+P + IQL Sbjct: 67 QYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQLA 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + + D A+R +P +LI R+L+ I AAP YL N PL+ Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMMIDAVVCAAPTYLANT-SPLN---- 179 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + +L+ L+ +++L + + L+ N ++ + G GI LP Sbjct: 180 EPIDLLAHNCLVHTAQHSWHFLKEKQSEVIKV-TGNLKANDMGVLVSAALRGHGIVRLPC 238 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + L ++ D P T++ Y L + + R FI A+ W+ Sbjct: 239 DLANQYLASGQLQEVLPDFTAPGQTLWAVY---LSRSYQQMLVRAFIDFTAQQWQL 291 >gi|262380606|ref|ZP_06073760.1| transcriptional regulator [Acinetobacter radioresistens SH164] gi|262298052|gb|EEY85967.1| transcriptional regulator [Acinetobacter radioresistens SH164] Length = 302 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 23/283 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++L+VF + SGS A+EQL S S +SR + LE+++ + L R R L+LT Sbjct: 1 MKSTFEELQVFVSIVDSGSIVKASEQLGQSTSGLSRILQRLESKLNVTLLERTTRKLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G ++ ++L + L +S + SGK+RI + +++ +++F+ YP Sbjct: 61 QEGQLFLERARKIINELNDAEELLLKSDHEVSGKIRIDSATPFVLHVIAPLMQKFMQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+I+L ++ ID+ D AIR + + SSL R L ++ A+P YL+ P Sbjct: 121 YIEIELNSHDQIIDLLEHRTDVAIRFGQ-LNDSSLHARLLTQSRLYIVASPAYLEQYGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 + EL +H LI F PK + + N T PI + ++ ++ Q Sbjct: 180 QTAGELLQHQLIGFSS--PKHLNTWPLKLGNEYFTATAPI--------RASNGETVRQLA 229 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYF 271 +L GI L +++V + LV + ED I P VY+ Sbjct: 230 LLHHGITCLSEFLVGQDLAQNRLVALFEDQIELHYQPIHAVYY 272 >gi|257485828|ref|ZP_05639869.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011001|gb|EGH91057.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 300 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 15/251 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++LF+R R ++LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + L+ + SG LR+ GQ ++ L +L P + I L Sbjct: 66 PHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L +P YL +P ++EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCVSPDYLARHGKPALLEELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243 H I + W + GEP Q NS ++ C G G+A+ Sbjct: 185 HHPCI--------ALHAMPWWSFTRN--GEPITIRAQGPFSANSVEAVRTACKQGIGLAM 234 Query: 244 LPDYIVKDNPN 254 L + V+ N Sbjct: 235 LTYWDVRQEIN 245 >gi|227112407|ref|ZP_03826063.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 306 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 127/284 (44%), Gaps = 8/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS AAE L +S++ ++R ++ +ET G +L +R R L+LT+ G K Sbjct: 9 VFVTIIDRGSMIAAAETLDISRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 E+ ++E SG LR++ + L Q L + FL +P + I L ++ Sbjct: 69 CREMLALTADMRVEADTDDATLSGLLRVSCSQSLAQGALGMAITTFLRRHPRVAIDLQMN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +++ + D A+R+ + +LI R L A+P YL P + +L H Sbjct: 129 NRTVNLVEERIDLALRITNELD-PNLIARPLSRCESVLCASPSYLNEYGIPRQLTDLSIH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N +T+ K + F+ D P L N L ++ + G+GIAL P Y V Sbjct: 188 NCLTY-TYFGKSLWHFS---RSDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYSV 243 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LV ++ + + +Y Y + L+ +F+ Sbjct: 244 APYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFL 287 >gi|218694373|ref|YP_002402040.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218351105|emb|CAU96809.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] Length = 302 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAVTPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ED T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|149919354|ref|ZP_01907836.1| putative transcriptional regulator protein, LysR family [Plesiocystis pacifica SIR-1] gi|149819854|gb|EDM79278.1| putative transcriptional regulator protein, LysR family [Plesiocystis pacifica SIR-1] Length = 306 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 145/290 (50%), Gaps = 16/290 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+ F V GS + A+ +L + ++++SR+++ LE +G++L +R R + LT+ G + Sbjct: 11 ELQAFVAVVEGGSISGASRELSVPRATVSRRLALLEERLGVRLLHRTTRKMRLTDAGVEF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R E+ ++ + +++ +P G LR+ ++ + L F YP+++I+L Sbjct: 71 YRHAREIVLAVDAARAAVRQGDGEPRGLLRV--SVPPTDVRFREVLCAFAERYPEVEIEL 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 I+ + D+ D A R + LI R + T+ + A A+P YL+ P ++ EL Sbjct: 129 IVSTRHEDLIARGIDVAWRAAADL-DPGLIARGMRTLELIAVASPAYLEAHGCPRTVDEL 187 Query: 187 DKHN-LITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243 D H L+ F G P+ +W R G R+ V + L +++ VL G GIA+ Sbjct: 188 DAHACLLGFEGGERPET----HWPL---RDGGRVRVRGRLVTNELMLVRDAVLRGLGIAM 240 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ D+ LV ++ +++ + +P+ ++AF F+ Sbjct: 241 LPALTIQQALDDGRLVPVLPELVGGQAKIALVFPDRKLLEPAVRAFIEFM 290 >gi|172063829|ref|YP_001811480.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996346|gb|ACB67264.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 316 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 9/247 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + V+A +GSFT AA++L +S++++S++I+ LE G+ L R R + LTE G Sbjct: 10 WPHIHSLTVLAVTGSFTAAAQRLGISKAAMSQRIADLEGAAGVPLVRRTTRSVRLTEAGQ 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L T E Y +E +++ + +P G +R+ + LG+ + F+ YP ++I Sbjct: 70 TLVDTTREAYETIEMNFARVKDLAGEPRGLVRVTMPVALGRQQIVPLFPAFIEQYPGVRI 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L ++ +S + D AIR + + KL A+ YL P Sbjct: 130 ELELSDRLFSLSQEGFDLAIR-HTTTAPQTHVAWKLCETRSLLVASREYLARRGTPEHPN 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H+ + + + E W DR + P C N+ ++ + + G G Sbjct: 189 ALVDHDCLCY----LRGNEPTAWSFEPRDRRRARVSVPVRGCFAANNSEAMREAALGGLG 244 Query: 241 IALLPDY 247 IALLPD+ Sbjct: 245 IALLPDF 251 >gi|71278918|ref|YP_267550.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144658|gb|AAZ25131.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 298 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 142/291 (48%), Gaps = 17/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF + SGS T AA +L+ S ++ R ++ LE + I+L R R + +TE+G + Sbjct: 7 MQVFMQIIESGSLTKAANELNTSLPTVVRTLAALEEHLQIRLINRTTRKIAITEEGKRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +++E +++E+ + PSGKL+I+ ++ G + + +FL + + I+L Sbjct: 67 QRCRKIQYEIEQSELEISANQKAPSGKLKISASVMYGSAYIAPLITKFLQEHKQVTIELE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +++I++ + D AIR+ P+ S++I RK+ ++ A P L + + + + Sbjct: 127 LSDQNINLIEEGVDVAIRI-GPLNDSNMIARKVGSVRKIICATPALLNSLAPIIKPKNIS 185 Query: 188 KHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I F L NW + P+ P I C + S LS+++ + G+ Sbjct: 186 DVPCILFTGL----SNGSNWNFYENDKVISIPVKGPLI-CNNITSALSVVKESL---GLG 237 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y ++ N L ++E +P V Y A + +++ F +++ Sbjct: 238 QFLSYQIEQELKNGELCTVLEAFESPPLDVNVVYSHAKLMSTRIRYFVDWV 288 >gi|154246658|ref|YP_001417616.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160743|gb|ABS67959.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 310 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 21/293 (7%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----K 65 VF A + F+ A +L LS S++S+ ++ LE +G LF R R L LT +G+ + Sbjct: 10 VFVAAAETQGFSAAGRKLGLSPSAVSKLVTRLEDRLGTPLFVRSTRQLQLTAEGALYLER 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R+ +E+ +T ++ + P G+LRI+ ++ G+ + + FL LYP +++ Sbjct: 70 ARRILAEID---DTERLIATGAGAVPRGRLRISASVAFGEMCVLPRVPRFLELYPQVELD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L + ID+ + D AIR + ++ S+L RKL I A+P YL+ P ++ Sbjct: 127 ISLSDAVIDLVDERTDIAIRTGR-LRDSTLKARKLFEIGRVIVASPAYLERHGVPQHPED 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244 L +H + F + ED+ + +S + NS + + + + G+G+A L Sbjct: 186 LARHLCLCFN--FRRSPEDWPFRDPESGKAFTQAVSGTALGNSGVVLRRLALDGAGLARL 243 Query: 245 PDYIVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y V+ + LV ++E+ I P VY + +++AF +F+ Sbjct: 244 GRYHVRGDLAAGTLVSVLEEFNAGDIEPIHAVYVGHAHL---AARIRAFVDFL 293 >gi|291619369|ref|YP_003522111.1| LtrA [Pantoea ananatis LMG 20103] gi|291154399|gb|ADD78983.1| LtrA [Pantoea ananatis LMG 20103] Length = 303 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 126/260 (48%), Gaps = 15/260 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V SGSF+ AA L ++ SS+SR I LE + + LF R R L +TE G +++ Sbjct: 14 LVLFVQVVESGSFSSAARALSMTPSSVSRMIDRLEKRLNVLLFTRSTRALAVTEAGQEIY 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V ++ + S P G LRI LG+ LL L FL Y +I I+L Sbjct: 74 HQALSVIAATKSLFSQADSYSDVPKGLLRITAPTTLGKILLTPFLPGFLRRYAEINIELN 133 Query: 128 LDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + I+++ + D A+R+ PI +++ R L+ + A HY + R P + Sbjct: 134 LTDHLINLTHESYDLALRVTDTPPI---NMVARALMPVDYVLVCAEHY--DQRLPDMPGD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +HN I F D E WL T++ PR L +N+ +++ + G GIAL+ Sbjct: 189 LKQHN-IFFPDDAQFRGEWRFWLNDTMESVTLTPR---LMINNSDAMIDAILQGVGIALI 244 Query: 245 PDYIVKD---NPNLVRIMED 261 P +I N L R++ D Sbjct: 245 PTFIANGYLLNGQLRRVLPD 264 >gi|227872472|ref|ZP_03990812.1| LysR family transcriptional regulator [Oribacterium sinus F0268] gi|227841673|gb|EEJ51963.1| LysR family transcriptional regulator [Oribacterium sinus F0268] Length = 339 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 152/305 (49%), Gaps = 27/305 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + R+FY VA+SG+ + AAEQL++SQ +IS+ I LE + IKLF R++RG++LT Sbjct: 42 MEQNLSTYRIFYEVAKSGNISKAAEQLYISQPAISKTIVRLEDSLEIKLFKRNSRGVSLT 101 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G L + + + ++ + LQ+ G L I + L + +L LK F+ YP Sbjct: 102 DEGKVLFQYIKDAFAHIQEAEETLQKMKDFHIGHLDIGASSTLCRFILLPYLKAFMKEYP 161 Query: 121 DIQIQLILDNKDI--------DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172 +I+I L N+D D +D A A+ + I L++R++ I + AAP Sbjct: 162 NIRIS--LKNQDSGKTLHLLEDHQIDLALAALPKKLGINQEILMEREVEDILV---AAPQ 216 Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC---LQVNSY 228 YL N ++++ F D +E+ N ++ + E +I C +++N+ Sbjct: 217 YLHN------LKKIRGEAFSLFQDANVMLLEEQNLSRHHIENYLKENQIYCPQIMELNTM 270 Query: 229 LSIMQYCVLGSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 ++ +G GIA ++ D++ +D N LV I + F Y N+ L++ Sbjct: 271 DLLIDSAKIGIGIAWVIRDFVAEDLKNGQLVEIKLPQPIQKRRIAFLYNNK-NNSPSLES 329 Query: 286 FRNFI 290 F +F+ Sbjct: 330 FVSFL 334 >gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282760|gb|ABR91170.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 299 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 19/289 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F + SGS A+ +L S +I+R + LE +G +L R R L TE G Sbjct: 5 DELEIFIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATEAGLH 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + E T +QE + P G L++ + G+ + + +L YP++++ Sbjct: 65 LAQQARRLLADYEQT---VQEDASAPLRGTLKVTAPVVFGRRHVAPIVNSYLDQYPEMRV 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +LI +++++D+ + D +R+ + +S++ R++ + A+P Y++ EP SI Sbjct: 122 ELITNDRNLDLIEEGIDVGVRI-GSLADTSMVARRVGQVQSVLVASPDYIERRGEPKSIA 180 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSG 240 ++ H++I F + K E W R G +I L VN +++ G G Sbjct: 181 DIAHHDVI-FTAIREKAPE---WRF---RHNGREQIVALTPRLIVNEIDAVLLAAKAGRG 233 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +A + Y V D L+R++ + P V P A K +AF Sbjct: 234 LARVLSYQVADELQAGTLLRVLPKLDAPDLPVQLIVPSARLMAPKSRAF 282 >gi|148979121|ref|ZP_01815329.1| regulatory protein, LysR [Vibrionales bacterium SWAT-3] gi|145961987|gb|EDK27276.1| regulatory protein, LysR [Vibrionales bacterium SWAT-3] Length = 295 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 7/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V GSFT AA ++ +S+S +SR + LET + +L R + L+LTE G + Sbjct: 7 IKSFIVTVEEGSFTGAASKIGVSKSLVSRHVRELETYLNTRLLNRSTKSLSLTEAGRRYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E L+ S + G L + L + +L + EF YPD+++ L+ Sbjct: 67 SEAHGLVDRIEDLNDSLRFDSSEMVGALSVMAPKGLTEIMLMPFILEFSDKYPDLKLNLM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D++ + D AIR + +I R + A+P YL N + + ++L Sbjct: 127 LSDGVQDLAEEGCDIAIRSGDLVSKDLGMIARTICVNQNLVCASPSYLANHSDIQTPKDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +I +L + F+ +P+ L VNS ++ G GIA+LP Sbjct: 187 TNHCIIEDPNLKNDGLWRFDLGGHFHDVNLQPK---LTVNSVQAVKAAVRSGYGIAMLPR 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + K++ ++V I+ + + VY Y E + K+KAF Sbjct: 244 QLAKEDLESGSIVEILSEYVLKERKVYALYRERVNTPRKVKAF 286 >gi|194366842|ref|YP_002029452.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349646|gb|ACF52769.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 304 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 131/288 (45%), Gaps = 8/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + ++V+ ++ GS + AA + +S + + + LE +G++L R R +T G Sbjct: 5 ESMQVYVLIVDRGSLSAAATAMDISATMAGKHLRALEARLGMQLLSRTTRRQHMTPFGED 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E+ ++ T + Q + P+G LRI+ + G + L L E++ YPD++++ Sbjct: 65 YYARCKEILRLVDETDAQAQHQQLAPAGTLRISAPVIFGTHALVPALAEYMARYPDVRVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D++ + + A+R+ SS L+ R L + A+P YL P ++ Sbjct: 125 ATLTDRVVDLTEEGFEAALRIGTLAGSSELVARALTPYRLMMCASPAYLARHGTPDTLPA 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H ++F P + WL + LQ+N+ ++ + G GI L Sbjct: 185 LASHQCLSFE---PSALA--QWLQAGAGELDRTPDGRLQINNGEALRSAALHGLGIVLQS 239 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ D LV++ + ++ Y + +L++F +F+ Sbjct: 240 TLLLAADVDAGRLVQLFPEHGQAGRPMHVVYAHDRYRSTRLRSFLDFL 287 >gi|77460407|ref|YP_349914.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384410|gb|ABA75923.1| putative LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 331 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 103/192 (53%), Gaps = 5/192 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +GSF+ AA QL S S++SR IS LE + +L R R L L++ G ++ Sbjct: 12 EMAIFVKVVETGSFSEAARQLGSSPSAVSRSISRLEKALATRLLQRTTRKLRLSDGGEEV 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ ++ + + + G +R++ +G+ ++ ++ EFL YP + ++L Sbjct: 72 FKRCQEMVSAAKSVMEISGQFTHEAEGLVRVSVPKAVGRFVIHPHMPEFLRRYPKVDVEL 131 Query: 127 ILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+++ +D+ D+ D AIR+ R P + L+ R+L+TI A P YL P Sbjct: 132 LLEDRQVDLIDDHVDLAIRITDRPP---AGLVGRQLLTIDHLLCATPQYLAEHGTPTHPH 188 Query: 185 ELDKHNLITFGD 196 +L H+ I G+ Sbjct: 189 DLLNHSCIYLGE 200 >gi|114046663|ref|YP_737213.1| LysR family transcriptional regulator [Shewanella sp. MR-7] gi|113888105|gb|ABI42156.1| transcriptional regulator, LysR family [Shewanella sp. MR-7] Length = 307 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 12/279 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +VF + GS AAE L +S+S ++R ++ +E G +L +R R L+LT+ G + Sbjct: 5 EAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTDAGEQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + S +P G LRI+ + + LL ++ +L YP + Sbjct: 65 VLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQATVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D AIR+ + +LI R+L AAP YL + ++ Sbjct: 125 FHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLASHSAITHPED 183 Query: 186 LDKHNLIT---FGDLIPKCMED-FNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237 L +HN +T FGD++ + + AT + +G+ P L N + ++ + Sbjct: 184 LTRHNCLTYSYFGDVMWRFTQTPIAAKATPTQEVGQIFNIPVKGNLSANDSMVVLNATLA 243 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 G GIA+ P + K D+ LV ++ + S VY Y Sbjct: 244 GEGIAMQPLWAAKPHLDSGALVPLLREFKPQSLGVYGVY 282 >gi|289667986|ref|ZP_06489061.1| transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 325 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 139/292 (47%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F VA GSFT AAE L L ++S+S + LE +G +L +R R + LT G+ Sbjct: 27 ESLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTGDGTA 86 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ ++ Q Q + G+LR+ + + ++ + L FL +P +Q++ Sbjct: 87 FYQRSRDLLDDMDELQSMFQRERSQLRGRLRVDMSAGIARHFVIPALPAFLAQHPQLQVE 146 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC +R+ ++ ++L+ R L + + A+ YL P + + Sbjct: 147 ISGTDRRVDVVREGFDCVLRVGT-LEDTNLVARPLGAFRIVSCASAQYLARRGTPHCLDD 205 Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H+L+ T G P E ++ A P+ P + VN+ + + G GI Sbjct: 206 LAQHDLVHYVPTLGQRSPG-FEYYDGQAYQLLPMRGP----VTVNNGDGYLAAALAGLGI 260 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + LV I+ ++ V Y + +++AF +++ Sbjct: 261 IQAPASPLRAHLHSGALVEILPNLAVEPMPVTLLYAQRRHLPQRVRAFMDWV 312 >gi|207744828|ref|YP_002261220.1| hypothetical protein RSIPO_03042 [Ralstonia solanacearum IPO1609] gi|206596238|emb|CAQ63165.1| hypothetical protein RSIPO_03042 [Ralstonia solanacearum IPO1609] Length = 289 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 20/279 (7%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R F V R GS + AA L L+Q + R + LE +G LF R +GL+ TE L Sbjct: 3 RTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAALALR- 61 Query: 69 VTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 LE+T L ++ G +RI + + +L L + YP + + Sbjct: 62 ---PYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTGEVLPAILADLHAAYPGLTL 118 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+ N+ D+ AD A+R+++P Q LI R + I + +A YL+ P ++ Sbjct: 119 ELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTPATLD 177 Query: 185 ELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L H LI + I W+ DR L+ +S L+ + G GI Sbjct: 178 DLAGHALIGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRAGFGI 229 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 + + + +P+LVR+ D + P + E L+++ Sbjct: 230 GICQVGLARRDPDLVRLFADEVAPVLDTWLAMHEDLRDS 268 >gi|206580580|ref|YP_002238877.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206569638|gb|ACI11414.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 301 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++++ V + SF AAE L +S++SR + LE +G +L R R L++T +G + Sbjct: 5 DAMQLYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + S +P+G+ ++ L ++ + + EFL YPD+++ Sbjct: 65 YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + DI + DC IR + S++L+ R L A+P +L P SI + Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQSIDD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H + G L + +WL ++D R+ L V+ + +Q + G G+ + Sbjct: 185 LHHHRAV--GYLNHRTGRTIDWLFSLDDGDCAIRMQETLVVDDTDAYIQAGIQGLGLIRI 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+ + + LV +E + + YP+ ++AF ++ Sbjct: 243 ASYLAQPYLQSGALVACLEQAAS-DLPLSLVYPQNRYLPPAVRAFYDW 289 >gi|117621467|ref|YP_856626.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562874|gb|ABK39822.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 317 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 5/284 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F VA SFT +AEQL + ++++S I LE ++G +L +R R + LT G Sbjct: 5 DAMRMFVRVAELESFTRSAEQLGVPKATLSATIRRLEEQMGTRLLHRTTRRVQLTPDGKL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +E ++ + SG+LR+ + ++L+ L +L +PD+Q+ Sbjct: 65 CYARCQDLLADMEEFNALFRQQG-QLSGQLRVDMPSRMARHLVIPALPAWLAAHPDLQLL 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + DC IR+ ++SSSL+ R L A+ YL P S+ E Sbjct: 124 LSSTDRRVDLVREGFDCVIRV-GALESSSLVARPLGHYRQINCASAGYLARHGTPRSLSE 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H L+ +G F +L L VN S + + G GI LP Sbjct: 183 LSDHRLVHYGGGSGPRESGFEYLQADGSRAVLAMSGALTVNDSESYLAAALAGLGIIQLP 242 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V+ + LV I+ P ++ Y + +++AF Sbjct: 243 RVGVEPLLASGELVAILPKWQAPPLPIHALYAHRRQLAPRVQAF 286 >gi|320201970|gb|EFW76545.1| Putative transcriptional regulator LYSR-type [Escherichia coli EC4100B] Length = 310 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G + + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGHSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|270265322|ref|ZP_06193583.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270040726|gb|EFA13829.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 299 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 20/301 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR G+ + AA +L ++ S+S+ + LE +G LF R R + LTE G Sbjct: 6 YNQIRIFQSIAREGNISAAARKLEITPPSVSKALKLLEQHIGHPLFVRTTRRIELTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T LET+ +++ + +PSG +RI + +L+ + F YP I++ Sbjct: 66 QLLEQTVAAVDSLETSLENIRDQNQEPSGLVRITLSRFAYLLILKPAMAAFCRQYPGIKL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + + ++I + D IR ++ + ++ + YA+ YL+ P + Sbjct: 126 EVSVYDGTVNIIDERFDLGIRFGDILEGGVVARQLMKPFREGLYASSAYLEAFGTPTTPA 185 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV--- 236 EL +HNLI + ++P ++ TV+ P G+ +++ + +M + Sbjct: 186 ELHQHNLIGYRFITNNRILPLILDHKGEQLTVEMP-GQ------LISNDIEVMADGIRNG 238 Query: 237 LGSGIALLPDY-IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294 LG G P + ++ D + +ME+ VY YP KN GK K + I FL Sbjct: 239 LGIGRLFEPIHSLLPDKERFIPVMENYWKTYPAVYLYYP---KNAGKTKRVKTLIDFLIE 295 Query: 295 R 295 R Sbjct: 296 R 296 >gi|269102520|ref|ZP_06155217.1| transcriptional regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268162418|gb|EEZ40914.1| transcriptional regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 310 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 124/251 (49%), Gaps = 18/251 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF +V GS+T AA++L ++ S++S+Q+S LE + +KL R R L ++E G +++ Sbjct: 20 LAVFIIVVDEGSYTAAAKKLGVTPSALSKQVSKLEKALSVKLLERTTRKLVMSESGKRIY 79 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + T+ + + +I E ++ P+G + +A +LQ + FL LYPDIQ+++ Sbjct: 80 EQCTAMMSAAKQAVEISSSEHTI-PAGTVTVAAPKAFMSIMLQPLVTPFLNLYPDIQLKI 138 Query: 127 ILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + DID+ + D RL KPI+ L +++ +++ A+P Y+ P E Sbjct: 139 KARDGDIDLLAEEIDIVFRLTEKPIEGQVL--KQVGKVNLVLCASPDYIARKGLPQHPLE 196 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-----GSG 240 L H+ I G+ + +F+ G R S Y L G G Sbjct: 197 LKHHDCIYLGETNTDHIWEFHQ--------GTERHSIAVTGRYAVNHSQMRLKGVQDGLG 248 Query: 241 IALLPDYIVKD 251 I + PD+++K+ Sbjct: 249 IGIFPDFVIKE 259 >gi|221209837|ref|ZP_03582818.1| LysR substrate binding domain protein [Burkholderia multivorans CGD1] gi|221170525|gb|EEE02991.1| LysR substrate binding domain protein [Burkholderia multivorans CGD1] Length = 303 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE + ++L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTVEGTTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + +E+ P G +R+ + + L +F YPD+++ + Sbjct: 67 ERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHHVIPALPDFHARYPDLRVVIS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DCA+R+ + +SL+ R++ + A+ Y P + EL Sbjct: 127 MTDRFVDLVADGIDCAVRVGT-LSDTSLVARRIGEMAQLNCASRDYAARHGLPRTPDELP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W T D G+ S + VNS + + CV G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDWEYT-DMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLGMIQ 242 Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + ++ D LV ++ + P V +P +++ F +++ Sbjct: 243 APRDGLEPLLADG-TLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWL 292 >gi|218674395|ref|ZP_03524064.1| LysR family transcriptional regulator [Rhizobium etli GR56] Length = 307 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/280 (23%), Positives = 133/280 (47%), Gaps = 7/280 (2%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 A S+ AA +S S+I + I+ LE +G++LF R R ++LTE+G+ L+ + Sbjct: 13 AAEQQSYVGAARVAGISPSAIGKSIARLEGRLGVRLFNRTTRSISLTEEGAVLYERYKRI 72 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 ++ + + S +P G+LR++ +G +LL L F +P+I++ + +++ + Sbjct: 73 IDDMQDAEAGILRSRQRPRGRLRVSVPHIVGHHLLMPILPMFAARFPEIELDIDFEDRVV 132 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+ + D +R + + + LI R L H + YL P + +L H I Sbjct: 133 DLVAEGLDAVVRSGE-LADARLIARHLGEQHFVVCGSADYLDRRGRPQTPNDLSGHACIH 191 Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN- 252 F + +++ DR + ++ ++ L Q G G+A LP Y+ + + Sbjct: 192 FKYPSSGRIAPWSFHQPYDRLLLPKNLTFNNTDAGLRAAQD---GLGLAHLPVYVAQPHL 248 Query: 253 --PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 NLV ++ + P ++ +P + + K++AF +F+ Sbjct: 249 RAGNLVPVLTAFMAPFGSLSLVWPSNRQLSPKVRAFVDFV 288 >gi|83594805|ref|YP_428557.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577719|gb|ABC24270.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC 11170] Length = 293 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 13/289 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + VF A +GS + AA +L ++ + +R+++GLE +G++L R R ++LT + Sbjct: 1 MDTEAVTVFVTAAAAGSLSAAARRLAITPMTATRRLAGLERVLGLRLMQRTTRAVSLTPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + L+ +++ SG LR+ T G+ ++ + L +P++ Sbjct: 61 GEAFLPYAQAMVESEAAGRAMLRSAAIGVSGLLRVTTPAAFGRKIIAPLIPGLLRAHPEL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L L++ +DI AD AIR+ ++ S+LI K+ AAP YL P Sbjct: 121 RIDLDLNDAVVDIVATGADLAIRI-AVLRDSALIAHKVAASPRVLCAAPAYLAERGTPRL 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 + +L H+ +T +W DR + R++ N ++ C+ G+GI Sbjct: 180 LADLAGHDCLT-------QTGTTHWPFQADRRDLKARVNGRFSANGIEALHGACLGGAGI 232 Query: 242 ALLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286 ALL + V D+ LVRI +ED +++ YP A KL+ F Sbjct: 233 ALLALWNVGDDLAAGRLVRITLEDAAALDLSIWAVYPSARFVLPKLRVF 281 >gi|119382963|ref|YP_914019.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372730|gb|ABL68323.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 302 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 13/263 (4%) Query: 19 SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78 SFT AAE L +++S++ + +S LE +G+KL +R R L LT+ G ++E Sbjct: 21 SFTGAAESLGMTKSAVGKSVSRLEARLGVKLIHRSTRRLVLTQDGEAYLAAARRALEEIE 80 Query: 79 TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138 + L + + +G+LRI G+ +L L E L P +++ L L ++ ID + Sbjct: 81 AAEASLSSNHREIAGRLRIDAPAAWGRRVLLPILTEVALAQPGLRLSLSLTDRIIDPVAE 140 Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198 D IR + ++ LI RKL AAP YL C P ++L +H +T Sbjct: 141 QVDLVIRFGETADTADLISRKLAEQRAPLVAAPAYLARCGVPAQPEDLLRHCCVT----- 195 Query: 199 PKCMEDFNWLATVDRPIGEP---RIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKD--- 251 + + RP P R++ ++ ++++ + G GIA +P +V D Sbjct: 196 -GISREMPIGFRIARPGCAPQRLRVAPAHEIGDGSAVVEAAIAGLGIAQMPLSLVADALS 254 Query: 252 NPNLVRIMEDVITPSFTVYFCYP 274 + LV ++ + T ++ +P Sbjct: 255 DGRLVEVLPEFGTVPVGIFALWP 277 >gi|325518543|gb|EGC98223.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 304 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 129/297 (43%), Gaps = 17/297 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S I LETE+G+ L R R + LT+ G + Sbjct: 5 DRFVVFRAVVEAGSFTAAATALNQARAAVSFNIKQLETELGVTLLTRTTRRVELTDAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R V + E E++ +G LR+ +T++ +L L F L+P ++++ Sbjct: 65 FYRRCLRVLDEAEGAIDEVRGEHGGMAGILRVTSTVEYAARILAPALHAFAALHPALRVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKNCREPLSI 183 L D+ D D AIRL + L R L T + AP P Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRIEHFRDLPYRGVCLGTYDVLPVMAPDLPARVGAPHPA 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT-------VDRPIGEPRISCLQVNSYLSIMQYCV 236 D L G + W T V RP +PRI V++ + + Sbjct: 185 SPDDLARLPQLGH--SRLERIAQWTLTDRAGGEHVFRPHAKPRIV---VDNASVLRELAR 239 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GSG+ALLP ++V D+ LV + P VY Y K++A+ +F+ Sbjct: 240 AGSGVALLPAWLVHDDLEAGTLVDALPAYRFPQQNVYALYVATRHVPQKVRAWVDFM 296 >gi|295691115|ref|YP_003594808.1| LysR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433018|gb|ADG12190.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC 21756] Length = 304 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 15/251 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF +SGSF+ A +L LS S++SR I +E +G++L R R LTLT +G Sbjct: 12 ELEVFVAAIQSGSFSAAGRKLGLSPSAVSRTIYRIEARLGVRLILRTTRVLTLTAEGQTY 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + L+ T+ ++ + P G+LR++ + G+ + L F LYP I + + Sbjct: 72 LGAARRILADLDDTERQIADQGA-PRGRLRVSAALSHGRLCIVPLLGRFAQLYPHILVDI 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D++ AD AIR + S L R++ A+P YL P ++L Sbjct: 131 SLTDAIADVAGGQADVAIRF-GILPDSPLTARRIGETGRTIVASPDYLARHGTPQVPEDL 189 Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 HN + F + P + ++ TV+ ++ N+ ++ Q + G GI Sbjct: 190 HDHNCLNFNFRRAEPVWPFRKDGRDYALTVN--------GSIEANNGETLAQLAIAGVGI 241 Query: 242 ALLPDYIVKDN 252 + ++ V ++ Sbjct: 242 TRVGNFSVAED 252 >gi|209515646|ref|ZP_03264510.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209503882|gb|EEA03874.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 288 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 8/283 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F + R + AA L + Q+++ R+++ LE +G LF R + G LT Sbjct: 1 MNWDDARIFVALHRERTLRAAARALDIDQATVGRRLAALEHALGATLFLRTSNGYKLTPV 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G R + Q + +G+++++TT L + L+ +PD+ Sbjct: 61 GRIAIRAAEAMEQSAHDLVRHTQGVDKRLAGEVKLSTTDALAHEFVMQALERLHAKHPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L ++++ AD AIR KP ++ L+ R+L + +A+P Y++ EP+ Sbjct: 121 SVMLDTTTLLLNLAKREADIAIRTVKP-RNPDLLARRLARWEVGLFASPDYVRRHGEPVP 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + H+L+ + K A V P+ + RI ++N+ L++ G GI+ Sbjct: 180 GERFAGHDLVVYQPYFAKARVP----AFVGEPLTDGRIVA-RLNTNLTLRAALKAGLGIS 234 Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLK 284 +P + + LVRI D S+ V+ + L++T +++ Sbjct: 235 EIP-VPMGERDGLVRIWPDRTNDASYEVWLVTHQDLRHTARIR 276 >gi|220920852|ref|YP_002496153.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945458|gb|ACL55850.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 311 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 20/301 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF GS A L S +++SR I+ LE +VG L +R R + L+E G + Sbjct: 5 DAMRVFVAALDEGSLAGAGRLLGRSPAAVSRAIAFLERQVGAPLLHRTTRAIKLSEIGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V L+ ++ P G L I G+ +L+ + FL +P + + Sbjct: 65 YAAACRRVLVDLQEAEMVAAGEQAAPRGTLTITAPPISGEEILRPIVDAFLEAFPTVSVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L +++ ++ + D A+R+ + SS + R + A+P YL + Sbjct: 125 LLLLDRNANLVEEGIDVALRVAELPDSSMVAVRVGGGVKRVVVASPRYLAMHPRIEQPSD 184 Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVL 237 L KH ++T FG + + + PIG +PR L VNS + + V Sbjct: 185 LAKHRIVTTAHFGQ------DAWVFPPAAGSPIGRSIHFKPR---LVVNSVRAALGAAVG 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G G+ L Y V + + +L R++ D P+ V P+ + K++AF +F + Sbjct: 236 GLGVTRLYTYHVAERVHDGSLQRLLRDAEPPAMPVNLLMPQGRMSVPKVRAFIDFAAPRL 295 Query: 295 R 295 R Sbjct: 296 R 296 >gi|91224528|ref|ZP_01259790.1| Putative transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] gi|91190870|gb|EAS77137.1| Putative transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] Length = 294 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 21/289 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L + V SG F+ AA+ L + + +SR +S +E+++G+ L R R + +TE+G + Sbjct: 6 DELEILMAVVDSGGFSSAADALGIQVARVSRAVSKVESQLGVTLLNRTTRRVEVTEEGHQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ + E+ P G+LR+ + L ++ F YPDIQ+ Sbjct: 66 FVEAVRLGLLQIQQAEEEIITRGELPKGRLRVDAASPFVLHQLVPLIQPFKEAYPDIQLD 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ + + S+L + L T + A P YL P ++ + Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGR-LSDSTLHAKPLGTSPLFIVATPGYLSKRGFPEAVSD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L HNLI F + N + EP I +S ++ Q + G+GIA L Sbjct: 185 LRSHNLIGF-----SGAKVLNQWPLRGFEMIEPDILS---SSGETVRQLVLAGNGIACLS 236 Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 ++VKD+ + R+ V E + NTG+ + N +F K+ Sbjct: 237 GFMVKDDLDSGRL----------VALFESEKITNTGREQV--NAVFYKS 273 >gi|71736089|ref|YP_274501.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556642|gb|AAZ35853.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 300 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 15/251 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++LF+R R ++LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + L+ + SG LR+ GQ ++ L +L P + I L Sbjct: 66 PHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L +P YL +P ++EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCVSPDYLARHGKPTLLEELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243 H I + W GEP Q NS ++ C G G+A+ Sbjct: 185 HHPCI--------ALHAMPWWPFTRN--GEPITIRAQGPFSANSVEAVRTACKQGMGLAM 234 Query: 244 LPDYIVKDNPN 254 L + V+ N Sbjct: 235 LTYWDVRQEIN 245 >gi|330817116|ref|YP_004360821.1| LysR family regulatory protein [Burkholderia gladioli BSR3] gi|327369509|gb|AEA60865.1| LysR family regulatory protein [Burkholderia gladioli BSR3] Length = 316 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 38/304 (12%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++VF + GSF AAE++ +S + S+ ++ LE+ + +L +R R ++LTE G Sbjct: 6 SMQVFRHIVEIGSFVGAAERMGMSSAMASKHVAHLESRLDARLLHRTTRRVSLTEAG--- 62 Query: 67 HRVTSEVYHKLETTQIELQESS-------VKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 E Y ++ IE+ E+S + P G+LR+ + G L G + ++ Y Sbjct: 63 ----REYYERVVPALIEIDEASQSVNTEAIVPRGRLRVVSPSSFGLRHLVGAVTDYTARY 118 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 P++ + + + ++ +D + + D AI L P + +S R L T + A+P YL Sbjct: 119 PEVNVDVAISDRVLDPADERYDIAI-LVTPSSTKPASPFARPLATAQILFVASPAYLAEN 177 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ--- 233 P ++ +L HN+ ++D N +D E I+ + +NS LS+ Q Sbjct: 178 GTPATLTDLAAHNI----------LQDSNGAGPLDSIAREAAIASRVALNSNLSVNQPEA 227 Query: 234 ---YCVLGSGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAF 286 V G+GIALL + D+ +LV ++ DV T +++ + + + ++F Sbjct: 228 LRIAAVNGAGIALLGTDVAGDDIDAGHLVPLLRDVSPTRRLSIHATLGASPRASTTSRSF 287 Query: 287 RNFI 290 +F+ Sbjct: 288 VDFL 291 >gi|226953991|ref|ZP_03824455.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226835242|gb|EEH67625.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 328 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 30/300 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V SGSFT AAEQ+ L+ + +SR IS LET +G+KL R R LT+ G+ Sbjct: 23 MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGVKLLQRSTRQHALTDIGATYA 82 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +E + E ++ KP G+LRI + G + + EF YPD+ ++ Sbjct: 83 ERCRQVLSIIEEAEAEATGTAAKPKGRLRIQSMASFGHYYVAPVMAEFCQTYPDLTVEYR 142 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D ++ L + + S + R++ +I A+P YL+ P S EL Sbjct: 143 TSQNAPDLLAKGIDVSLYLTESLTDSRFVARRIGSIFSVLCASPAYLQKHGIPQSPDELH 202 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGSG 240 H + + P ++ +GE S L ++ ++ G Sbjct: 203 DHACLRLVN--PSITPQWHL-------VGENSCSYQIDISGQLIADTPELLLDMVQQDMG 253 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 IALLP + V D +L I+ D +P VY P R+FI K R W Sbjct: 254 IALLPMFAVIDAVRAGHLCHILPDWRSPDIGVYTLLPS-----------RHFIDAKTRAW 302 >gi|221197243|ref|ZP_03570290.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD2M] gi|221203915|ref|ZP_03576933.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD2] gi|221176081|gb|EEE08510.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD2] gi|221183797|gb|EEE16197.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD2M] Length = 302 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 131/276 (47%), Gaps = 16/276 (5%) Query: 25 EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84 +L L+ +++S++++ +E G+ L R R + LT +G + +++ L Sbjct: 27 RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86 Query: 85 QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144 + +P G LR+ T+ G++ + + F+ YP++ +QL L ++ D D I Sbjct: 87 GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146 Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204 R +P + ++ R+L + AAP YL P + EL +HN I I + E Sbjct: 147 RFGEP-PDTRVVARRLASNRRLLCAAPAYLARHGTPGTPHELTRHNCIG----IRQGDEG 201 Query: 205 FN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NPN 254 + W T R R +++N L+ +++ + G GI + ++ ++D + Sbjct: 202 YGIWRLTTGRGAAR-RTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGR 260 Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV ++ D TPS +Y Y + + + +++AF +F+ Sbjct: 261 LVVVLPDYETPSADIYAVYAQRHQMSTRIRAFVDFL 296 >gi|119945159|ref|YP_942839.1| transcriptional regulator, substrate-binding of LysR family protein [Psychromonas ingrahamii 37] gi|119863763|gb|ABM03240.1| transcriptional regulator, substrate-binding of LysR family protein [Psychromonas ingrahamii 37] Length = 311 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE L+ S +S++I LE ++G++L YR R LT++E G Sbjct: 16 DDLILFAQVVEEGSFSKVAELNSLTNSVVSKRIKRLEADLGVQLLYRTTRKLTVSEAGKV 75 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ V + +G L+++ G +L G + EF ++P + Sbjct: 76 LYQGAKNVKQAALEAIDAVYGYGESVTGHLKMSVPSISGDLVLAGAVAEFCSMHPGFSVD 135 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+N IDI D D IR + SSLI R L+ AAP Y+K +P++ ++ Sbjct: 136 MSLENSFIDIVGDGYDLVIRTGY-LADSSLIARHLIDSQWVICAAPAYIKRFGKPMTPED 194 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L HN + + E + N++ V + L+ + + G Sbjct: 195 LINHNCLQYAYQTTGASEWEFKGINGNYIVKVAGNFSTDNATALR--------KAALGGY 246 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 G+A +P +V + +LV I + + +Y YP Sbjct: 247 GLAYVPKCLVYPDLLKGDLVDIFPERVGKKLGIYAVYP 284 >gi|116049264|ref|YP_791933.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584485|gb|ABJ10500.1| putative LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 303 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 14/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ F V GS + AA+ L +++ +S + LE E+G+ L R R L LT+ G + Sbjct: 5 DRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRLALTDAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V + + + + G LR+ TT + G L L+ F L+P +Q+Q Sbjct: 65 FYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + D+ + D AIRL + ++ S+ +L + + A A+P L EP Sbjct: 125 LSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDL 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239 L G + + W V P G PR L ++ ++ + + G Sbjct: 184 ESLERLQNLGH--SRLADSLPW--QVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LPD++V+ + L R++ D P V+ YP K++AF +F+ Sbjct: 240 GIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFL 293 >gi|262280426|ref|ZP_06058210.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258204|gb|EEY76938.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 304 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 132/296 (44%), Gaps = 33/296 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66 L+ +A +F AA +L +S S++SR I+ LE +GI+LF R R ++LTE G + L Sbjct: 9 LKAVIALANHRNFRSAAVELDMSSSALSRNIAQLEHNLGIRLFNRTTRSVSLTEAGLQFL 68 Query: 67 HRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R+T LE + +QE+ PSG LRI + + +L + E++ YPD++ Sbjct: 69 TRITP----ALEQIDLAVQETLDRRATPSGTLRINAEEGMSRQILHSVIIEYIRRYPDVR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH------MHAYAAPHYLKNC 177 + L+ D + IDI + D IR SS + + +V I M A P YL Sbjct: 125 VDLVSDGEFIDIVKEGFDAGIRF------SSTVPQDMVAIEIGPKQSMAVVATPTYLNTH 178 Query: 178 REPLSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 P +L KH I G + N T+D L +++Y+ + Sbjct: 179 GIPHIPSDLLKHQCIRLRLPSGKIYKWEFSQHNESLTIDVS------GHLTIDTYMLAID 232 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + G G+ + V + LVR++ED + YP+ + L+AF Sbjct: 233 SALSGIGLTYTGHWFVAPLIEQGKLVRVLEDWTPLYAGLCLYYPQGKHPSAALRAF 288 >gi|254440694|ref|ZP_05054187.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] gi|198250772|gb|EDY75087.1| LysR substrate binding domain protein [Octadecabacter antarcticus 307] Length = 310 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 8/262 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ D +R F V GS + A L +S + S +IS LE + ++LF R R LT T Sbjct: 1 MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISSLEEHLNVRLFQRTTRSLTAT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG + V ++T + ++ + P G L +A + +G+ L+ + F+ YP Sbjct: 60 EQGRAFYTGAVAVLEAVDTAEGQVAGITDNPKGSLYVAAPLGVGRRLIAPLVPNFVRDYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I I+L L ++ +D++ + D + L +P S+ I + +V AAP Y+ P Sbjct: 120 LIDIRLRLTDRTVDLTTEGLDISFFLGEPADSNLRI-KPIVHCDRVLVAAPKYIAQRGNP 178 Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 + L D HN + +L +F W L T D P + + + ++ + Sbjct: 179 VDGAALVKDAHNCL---NLRYPGAPEFQWRLQTSDGPQRFRVAGRYECDDGDVLTEWALA 235 Query: 238 GSGIALLPDYIVKDNPNLVRIM 259 G GIAL P + V + N R++ Sbjct: 236 GEGIALKPVFEVAGHLNAGRLV 257 >gi|221070000|ref|ZP_03546105.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|264680678|ref|YP_003280588.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|299532758|ref|ZP_07046145.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|220715023|gb|EED70391.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|262211194|gb|ACY35292.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] gi|298718982|gb|EFI59952.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 311 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 17/283 (6%) Query: 6 DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F VA GS T AA+ ++ + + R++ LE +G+KL R R ++LT + Sbjct: 2 DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + VK +G LRI G+ + + F L+PD+ Sbjct: 62 GSAFLEDCQRLLSDVCNAEASVSAGGVKATGHLRITAPAGFGRRHVAPLVPRFRDLHPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L ++ +D++ + DCA+R+ + S+L+ ++ A P YL+ P Sbjct: 122 TISLNLSDRVVDLAGEGFDCAVRVGD-LPDSALVSVRIADNRRLCVATPGYLERRGTPKH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLS------IMQYC 235 EL +H+ +T L + W + P G + + L + +C Sbjct: 181 PSELTQHDCLT---LSSDASQTRGWAFRIPHPESGTSEVVHFKPGGPLDCSDGQVLHDWC 237 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + G GIA + V+ LV ++E+ P ++ +P+ Sbjct: 238 LGGWGIAWRSTWEVEAEIAAGRLVPVLEEFAAPPNGIFVVFPQ 280 >gi|15803602|ref|NP_289635.1| transcriptional activator TtdR [Escherichia coli O157:H7 EDL933] gi|12517639|gb|AAG58194.1|AE005535_6 putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EDL933] Length = 310 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNXDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|89093266|ref|ZP_01166216.1| Transcriptional regulator [Oceanospirillum sp. MED92] gi|89082562|gb|EAR61784.1| Transcriptional regulator [Oceanospirillum sp. MED92] Length = 300 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 147/302 (48%), Gaps = 29/302 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VA + SFT AAE L +S+ +SR + +E+ +G +L +R R +TLTE GS+ Sbjct: 12 LKSFVEVACTSSFTQAAENLKVSRLQVSRHVKEVESWLGQRLLHRTTRKVTLTEAGSEAL 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + Q +G +RIAT I L QNLL ++ F+ +P+I+I+++ Sbjct: 72 VYCERILDEAAAMESLAQIRQNTLAGSIRIATPIGLSQNLLIEAVQGFITEHPNIKIEIL 131 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + D A+R +P + +LI R+L+TI A+P YL+ P + ++L Sbjct: 132 ASDSFAQLVDERIDIALRYTAQP--ADNLIARELMTIDSVICASPAYLEKNSAPKAPEDL 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSG 240 +H +C+ N+ + GE S ++VN +S + L G G Sbjct: 190 SQH----------QCLVHLNY-DDWEFDDGEENRS-IKVNGQISANELGTLVNAACAGQG 237 Query: 241 IALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + +P + ++ D LVR++ + P +++ Y + + +L A R FI Sbjct: 238 LIRIPCDLANPLISDG-KLVRVLSNYNLPENSLWAVY---MSRSYQLPAVRQFIDYLLTQ 293 Query: 297 WK 298 W+ Sbjct: 294 WQ 295 >gi|260556647|ref|ZP_05828865.1| transcriptional regulator lysR family [Acinetobacter baumannii ATCC 19606] gi|260409906|gb|EEX03206.1| transcriptional regulator lysR family [Acinetobacter baumannii ATCC 19606] Length = 298 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 100/192 (52%), Gaps = 9/192 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VV GSF+ AA +L ++Q ++ +I LE ++G LF R GL TE Sbjct: 7 WDDQKFFLVVLEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLKPTEHAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L T ++ ++ P +G +R++ + LG +L L +F LLYP Sbjct: 67 ALEVPT----RAMQRASDYFMRTASAPLNVIAGSVRVSVSDFLGTMVLPQLLSKFRLLYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ I+L L+N ++ AD AIR+ P+Q +L+ +K+ + + YA Y++ P Sbjct: 123 EVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKGNP 181 Query: 181 LSIQELDKHNLI 192 +++L +H+LI Sbjct: 182 TCLEDLRQHDLI 193 >gi|158424745|ref|YP_001526037.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158331634|dbj|BAF89119.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 321 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 1/188 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF V GSF AAEQL L +S+SR++ LE +G++L +R R + +E G Sbjct: 5 DDVEVFLRVVDRGSFNGAAEQLGLPPTSVSRKVKALEDRLGVQLLHRTTRRVWPSEAGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + L+ ++ + +P G L++ G +++ L F YP +Q+ Sbjct: 65 YYQKCVDAIAALDHADASIRALTQEPEGHLKVLLPHSTGILIVEPELANFRRRYPKVQLH 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN +D+ D A+RL P++ SS R L + + A+P YL P +E Sbjct: 125 ITLDNHPLDLIEHGFDVAVRL-GPVRDSSYHVRNLGSQQLIFLASPDYLDEFGRPSHPRE 183 Query: 186 LDKHNLIT 193 L H++I Sbjct: 184 LADHDIIA 191 >gi|150017012|ref|YP_001309266.1| LysR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903477|gb|ABR34310.1| transcriptional regulator, LysR family [Clostridium beijerinckii NCIMB 8052] Length = 288 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 37/304 (12%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +L+ FY +A G T+AA++LH++Q +S Q+ LE E+G+KL R +R + LT+ G Sbjct: 2 DIKQLKYFYAIAEEGQITNAAKRLHMAQPPLSYQLKNLEDELGVKLVERGSRNIRLTDAG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L++ ++ ++T+ EL++ G L I T G +LL L F YP I Sbjct: 62 VILYKRAKQILSLTKSTENELKDFKQGNHGTLSIGTVSSSGASLLDSRLNIFHEKYPFIN 121 Query: 124 IQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173 ++ +LD I+I++ +R P +S + L M A Sbjct: 122 FEIHEGNTYELLELLDKGIIEIAI--------VRTPFNNSGINSIFLPKEPMVAAMRKDL 173 Query: 174 LKNCREPLSIQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230 E ++I EL+ LI F LI K +DFN+ TV + R S L NS Sbjct: 174 NWTDSEIINITELNDKPLIFYRRFESLIFKVCQDFNFQPTVFCKNDDARTSLLWANS--- 230 Query: 231 IMQYCVLGSGIALLPDYIVK--DNPNLV--RIMEDVITPSFTVYFCYPEALKNTGK--LK 284 G GIA++P +K + +++ I D++T + + L ++GK L Sbjct: 231 -------GLGIAIVPKSAIKLIGSSSIIYKEIDSDILTTQIAIIWSKTGYLSSSGKNFLD 283 Query: 285 AFRN 288 F N Sbjct: 284 LFEN 287 >gi|115360132|ref|YP_777270.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285420|gb|ABI90936.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 300 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 136/289 (47%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++++ + G+FT AA+ L L + ++++ + LE E+GI+L R R +++T +G + Sbjct: 7 MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGIRLLNRSTRRVSVTAEGEAFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + V P G+LR+ + L + ++ L EF YP I++ L Sbjct: 67 ARCVQLLGSIDDAFASFPKQRVAPKGRLRLDIAVALAKTVVIPALPEFQQRYPQIELVLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D+ + DC +R+ ++ SS+I R + + M A+P Y+ P ++ EL Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMIARTVGAVPMVTCASPAYVVRHGLPRTLDELR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI------ 241 H + F + + ++ + A +R + S L N+ +++ + G GI Sbjct: 186 THRAVNFFTGANRKILEWTFRANDER-VNVKLPSSLLTNNSEALLSCGLAGLGIVHALRP 244 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL P D+ L+ ++ V V YP K++ F +++ Sbjct: 245 ALQPSI---DSGQLIELLPGVPAEPKPVSVMYPNRAHLPDKVRVFIDWL 290 >gi|171319706|ref|ZP_02908796.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171095047|gb|EDT40060.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 309 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 9/272 (3%) Query: 23 AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 AA QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ Sbjct: 22 AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 +++E P+G+LRI + L EF YP IQ+ +I++++ +D + D Sbjct: 82 QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFHRRYPGIQLDIIVNDRVVDPVEEGFDI 141 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202 A ++ PI S SLI+R+L + A+P YL+ P +EL +H + + Sbjct: 142 AFQIFPPI-SESLIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRN- 199 Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258 W T + E + ++ NS + +Y + G G+ LP + + LV I Sbjct: 200 ---RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPI 256 Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + YP + K+KA F+ Sbjct: 257 LTDFQIAPLSFAAVYPATQRQALKVKALVEFL 288 >gi|153208506|ref|ZP_01946790.1| LysR transcriptional regulator [Coxiella burnetii 'MSU Goat Q177'] gi|165924083|ref|ZP_02219915.1| LysR transcriptional regulator [Coxiella burnetii RSA 334] gi|212218257|ref|YP_002305044.1| transcriptional regulator, LysR family [Coxiella burnetii CbuK_Q154] gi|120575962|gb|EAX32586.1| LysR transcriptional regulator [Coxiella burnetii 'MSU Goat Q177'] gi|165916486|gb|EDR35090.1| LysR transcriptional regulator [Coxiella burnetii RSA 334] gi|212012519|gb|ACJ19899.1| transcriptional regulator, LysR family [Coxiella burnetii CbuK_Q154] Length = 292 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ +FY VA SF+ AA +L +S+ +S QI+ LE ++ +KL +R R LTLTE+G+ Sbjct: 5 NQMEIFYFVATLKSFSRAALELGVSKGYVSTQITALEKDLMVKLLHRTTRHLTLTEEGNL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ H+ + L+ES +PSG L++ + L L +F YP I + Sbjct: 65 FLESCAKIVHEKKLAISLLKESQAEPSGHLKVTAPPSMCNTFLTELLPKFQKKYPKISLT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ++ D A+R+ + I R + T A +YLK P + + Sbjct: 125 IDPSSTVKNLLQHGIDLALRITT-TPDENYIARMITTFRFVVCATSNYLKQRTIPKTPDD 183 Query: 186 LDKHN-LITFGDLI----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN LI D I P +++ + TV + S + NS L I + + G Sbjct: 184 LSQHNCLIYSADPIQNRWPFQIKNSTKIVTV-------KGSLVSSNS-LIIKKALLANQG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LP YI+ + L + + + VY Y A+K K+K F F+ Sbjct: 236 IARLPQYILTKEIEEGKLEVLFSENMKIEMPVYAIYASAVKIPPKIKCFIAFL 288 >gi|52425470|ref|YP_088607.1| LysR protein [Mannheimia succiniciproducens MBEL55E] gi|52307522|gb|AAU38022.1| LysR protein [Mannheimia succiniciproducens MBEL55E] Length = 302 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 136/302 (45%), Gaps = 20/302 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L VF+ +A GS AA +L ++ SIS+ + LE +G+ LF R R + LTE G Sbjct: 6 YGYLTVFHTIAAEGSIAGAARKLQMASPSISQSLKLLEQHIGLPLFNRTTRKMELTEAGH 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQ 123 L T + +L +Q+ S P G +R+ T +G L ++ +L EF YPDIQ Sbjct: 66 HLLASTQDAIAQLSVAVESVQDLSGVPKGVVRM-TVPHVGYWLIIEPHLAEFCERYPDIQ 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +++ +DI + D IR + + ++ + YA+ Y + P I Sbjct: 125 LEISINDGTVDILKEGFDLGIRFGDKVDEQMVAKKLTAPFRLGLYASSAYQQQFGLPKKI 184 Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 EL H L+ F + P + D +V+ P + + NS I+ V+ Sbjct: 185 AELKNHRLVGFRFATSNRIFPLSLNDKGEEVSVEMP------TPIVANSL--IVAKDVIK 236 Query: 239 SGIAL---LPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 SGIAL + K D + ++E +Y Y + + G+++A F K Sbjct: 237 SGIALGRFFEPLMSKQADRAAFIPVLEKHWKTFGALYLYYMQHSQKAGRVRAVIEFFTEK 296 Query: 294 AR 295 A+ Sbjct: 297 AQ 298 >gi|227822779|ref|YP_002826751.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] gi|227341780|gb|ACP25998.1| putative transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 309 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 24/297 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A GSF+ AA +L L+ +++SR ++ LE+ + ++LF R R L LTE G Sbjct: 6 NLESFVRSAELGSFSSAARRLGLTPAAVSRNVAALESNLKLRLFQRSTRSLALTEAG--- 62 Query: 67 HRVTSEVYHKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R V LE+ Q + E+S +P+G LR++ + G + L EF+ YP I+ Sbjct: 63 ERFLHSVRDHLESLQGAIAEASNEQAEPAGVLRLSMSPTFGIEYILPKLPEFMSRYPLIR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + +N+ +D+ + D AI + + +I + L + H+ A A+P Y+++ P Sbjct: 123 PEWMFENRQVDLIAEGYDAAIGGGFEL-TPGIIAKTLASAHIIAVASPSYMQDRVPP--- 178 Query: 184 QELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236 D L ++ + M W + GE + + L+ VN ++ V Sbjct: 179 --HDPSGLTELDGIVMRSMRTGRIRQW--QMRNVAGEEQSAALKERIVVNDPAAMRSAAV 234 Query: 237 LGSGIALL--PDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LG G+A++ PD + +N LVR+ + + Y K + F +FI Sbjct: 235 LGLGVAMIAKPDALPYLENGELVRLTPGWYADAGPISIYYANRTLLPTKTRVFIDFI 291 >gi|206559557|ref|YP_002230318.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035595|emb|CAR51481.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 337 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 7/254 (2%) Query: 3 FDWDK---LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 F+ DK +R F VA++ SF AA L++S SR ++ LE E+G++L R R ++L Sbjct: 4 FEMDKFRAMRTFVKVAQTSSFIKAANLLNMSVGVASRHVALLEDELGVRLLNRTTRKVSL 63 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLL 118 TE G+ V +L+ + + S+ +P+ G+LR++ + L L + Sbjct: 64 TEAGALFTESCQRVLDELDEA-LSISTSTTRPATGRLRVSAPTVFAISRLAPLLTLYRTS 122 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YPD+ I L+L ++ +D+ + D I ++S +++ R L H A P YL + Sbjct: 123 YPDVTIDLMLVDRPVDLVEEQLDVCIVPAHHVKSLNVVSRPLTISEFHICATPSYLSDHG 182 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 PL +L H + + + + F A V + P+ S + N++ + + + Sbjct: 183 APLHPSDLADHAFLAYRSDHREEVMVFKDAADVAVEV-LPK-SAVTSNNFGLLRESALAD 240 Query: 239 SGIALLPDYIVKDN 252 GIA+LP YIV+ + Sbjct: 241 LGIAMLPAYIVQHD 254 >gi|161521681|ref|YP_001585108.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352153|ref|YP_001947780.1| LysR family glycine cleavage system transcriptional activator [Burkholderia multivorans ATCC 17616] gi|160345731|gb|ABX18816.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189336175|dbj|BAG45244.1| LysR family glycine cleavage system transcriptional activator [Burkholderia multivorans ATCC 17616] Length = 297 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 12 NALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + L VK L I+TT L L +F +PDI ++ Sbjct: 72 YFSDVQRALHAIADATDRL----VKRRATLTISTTPSFASKWLIPRLAQFTDAHPDIDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIR KP L + + A +P L P S + Sbjct: 128 VIADQQLATFRHDGVDLAIRYGKPPFGKHFAAHALFPLDVCAVCSPALLA---APASPRA 184 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P ++A + P+ L+ N + V G GIAL Sbjct: 185 LAGHVLLHDAHDLWPA------FIAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALA 238 Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 D +V+ + R+ + D P S Y YP ++ + R+++ A Sbjct: 239 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIAVMRDWMIGAA 291 >gi|134293874|ref|YP_001117610.1| LysR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137031|gb|ABO58145.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis G4] Length = 368 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 16/253 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 WD LR F V R GS + AA L + S+++R+I LE+ +GI+LF R RG T++ Sbjct: 1 MSWDDLRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPTDE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + V + Q ++ G +R++ + + L L +P + Sbjct: 61 GLHLAEHAARVEADVHAFARAAQGAATL-DGVVRVSASPVFASHFLAPRLARAQRAWPAL 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I LI D ++ AD A+RL +P + L R+L T+ A+P + + Sbjct: 120 RIDLIGDMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCASPDW--------A 170 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 D + + D + + M WL +R R + + N ++ + CV G+GIA Sbjct: 171 AAPPDTWAFVGYDDALAQ-MPQQQWL---ERFAAGRRFAFIS-NDLAALHRACVAGAGIA 225 Query: 243 LLPDYIVKDNPNL 255 LLP ++V D P + Sbjct: 226 LLPRFLV-DLPGM 237 >gi|167851614|ref|ZP_02477122.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei B7210] Length = 285 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 1/177 (0%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GSFT AA + ++ +++SR +S LE +G++LF R R + LTE G E +L Sbjct: 2 GSFTAAATEAGITPAAVSRSVSRLEARMGVRLFVRTTRRIRLTEVGRAYLDQCREALSRL 61 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 + E P+G LR++ + L EF YP +++ + N++ID Sbjct: 62 INAEREATGQQNAPAGLLRVSMPTPYAHYRVLPLLAEFCARYPQLRVDTHISNRNIDFVD 121 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194 + D AIR R P+ S+L+ RKL + A P YL+ P S+ EL H I F Sbjct: 122 ESFDLAIRGRAPM-GSNLVARKLEDAELVIVATPDYLRRRGIPRSLDELPHHECIQF 177 >gi|167724813|ref|ZP_02408049.1| transcriptional regulator lysR family protein [Burkholderia pseudomallei DM98] Length = 315 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q ++ R ++ LE + + LF R + GL T+ Sbjct: 7 WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L R +E +E+T L ++ G +RI+ + +G +L + +P Sbjct: 67 AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L L N+ D+ AD A+R+ +P Q + LI R + I + +A YL C P Sbjct: 123 ALTVELALTNRVQDLLRREADIAVRMTRPAQ-TQLIARHIGGIELGLHAHRDYLARCGTP 181 Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 EL +H LI F I K F+ A L+ +S L+ + Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G+GI + K +P LVR++ ++ E L+ + + +A Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281 >gi|325124371|gb|ADY83894.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus PHEA-2] Length = 298 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 22/300 (7%) Query: 6 DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ F++ VA+ SF+ A QL L +S+++ I LET G++LF+R R ++LT+ Sbjct: 2 DRLQQFFIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + E + +Q G L+I+ + ++ L +F YPDI Sbjct: 62 GQRILPECQNLLFDYEQLEQLIQAQKQHYRGTLKISMPSRIVHQVIIPELPDFYSRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +QL + D+ DC +R+ + + +SSLI + + + M A+ YL+ P Sbjct: 122 HLQLHSSDDITDLIEKGIDCVVRVGQ-LDNSSLIAKFVGNLIMVNCASADYLEQYGIPEQ 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +++L +H LI + + + F++ +D S L VN+ + + + G Sbjct: 181 LEDLSQHKLINYAGAVGEKQGVFSYQDGAVMMD--------SALSVNNTEAYIAAAIAGL 232 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI LP Y V+D LV ++ S + YP +L+ F + ARD Sbjct: 233 GIIQLPYYDVQDKIEQATLVEVLSAYTAQSLPLNILYPNRSYIPKRLEIFMEW----ARD 288 >gi|190573959|ref|YP_001971804.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011881|emb|CAQ45502.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 305 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 122/257 (47%), Gaps = 13/257 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V +G F+ AA L ++ S++S+ ++ LE +G +L R R L LT +G Sbjct: 11 ELEVFVRVIETGGFSAAARTLEMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + V L+ + + +P G+LR+ + + GQ+ L L FL P + + L Sbjct: 71 YERGLRVLADLDEAE-RCASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLQRNPQVGVDL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L+++ ID+ D A+R P++SSSL+ R+L M AAP Y + P + +EL Sbjct: 130 TLNDEVIDLLEQRTDVAVRA-GPLKSSSLVARRLGATRMMIVAAPAYAQRHGLPRTAEEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 HN + G + M+ + L P G R S ++ Q + G G+A Sbjct: 189 QSHNRLDIGH--ARAMQGWPLLQDGRERMLLPSGNARASTGD-----ALRQLVLGGLGMA 241 Query: 243 LLPDYIVKDNPNLVRIM 259 L + V+ + R++ Sbjct: 242 RLAAFQVQQDIAAGRLL 258 >gi|115374726|ref|ZP_01462003.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|310822698|ref|YP_003955056.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115368297|gb|EAU67255.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309395770|gb|ADO73229.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 307 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 138/292 (47%), Gaps = 11/292 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR +F V GSF AAE L S ++++R ++ LE+ + +L R +R L+LTE Sbjct: 2 DRLRALEIFVKVVARGSFARAAEALDTSPANVTRYMNELESHLSTRLLNRSSRKLSLTES 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ + + + +S++P G+LR+ + G L +F+ +P + Sbjct: 62 GEALYERGKSILDDVAEAEALASSASLQPRGRLRLNAPVSFGILHLAPLWPQFMQRHPGV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +D+ + D AIR+ + ++ + RKL T AAP YL+ P Sbjct: 122 ELDVSLTDRVVDLVEEGYDLAIRISR-AGPATHVARKLATSQNIVCAAPAYLRRHGRPKV 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +L +H + + ++++ L + + ++ C + N+ ++ + G+GI Sbjct: 181 PTDLSRHTCVGYS--YSATADEWHLLDGTGQ-MHAVKVRCAMHANNGDTVRAAALAGAGI 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +++ D+ LV ++ P V YP + K++ +F+ Sbjct: 238 TWQPTFLIADDLRQGRLVPLLPGYRMPDIDVLALYPSRRYLSAKVRVMVDFL 289 >gi|154706329|ref|YP_001424200.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway 5J108-111] gi|154355615|gb|ABS77077.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway 5J108-111] Length = 292 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ +FY VA SF+ AA +L +S+ +S QI+ LE ++ +KL +R R LTLTE+G+ Sbjct: 5 NQMEIFYFVATWKSFSRAALELGVSKGYVSTQITALEKDLMVKLLHRTTRHLTLTEEGNL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ H+ + L+ES +PSG L++ + L L +F YP I + Sbjct: 65 FLESCAKIVHEKKLAISLLKESQAEPSGHLKVTAPPSMCNTFLTELLPKFQKKYPKISLT 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ++ D A+R+ + I R + T A +YLK P + + Sbjct: 125 IDPSSTVKNLLQHGIDLALRITT-TPDENYIARMITTFRFVVCATSNYLKQRTIPKTPDD 183 Query: 186 LDKHN-LITFGDLI----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +HN LI D I P +++ + TV + S + NS L I + + G Sbjct: 184 LSQHNCLIYSADPIQNRWPFQIKNSTKIVTV-------KGSLVSSNS-LIIKKALLANQG 235 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA LP YI+ + L + + + VY Y A+K K+K F F+ Sbjct: 236 IARLPQYILTKEIEEGKLEVLFSENMKIEMPVYAIYASAVKLPPKIKCFIAFL 288 >gi|254240698|ref|ZP_04934020.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 2192] gi|126194076|gb|EAZ58139.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 2192] Length = 312 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VA SFT AAE L LS+S +S Q+ LE ++GI+L R R +TLT++G Sbjct: 14 NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + +L+ ++++ +PSG+LRI D + + F+ +P +Q++ Sbjct: 74 LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D++ D+ D A+R+ P + S L KL A A P YL L + Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L + I L W T +R + L N+ L++ + + G+G++ Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +LP ++V LVR++ P +Y YP A +++AF Sbjct: 247 VLPSFLVAREIARGRLVRLLPGWHLPQGGIYALYPSARYMPVRVRAF 293 >gi|296161973|ref|ZP_06844773.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295887849|gb|EFG67667.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 303 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 17/298 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + ++ V R SFT A+E L + S++SR+I+ LE +GI+L R R L LT Sbjct: 1 MDINLNDTAIYVEVVRRQSFTRASEALDIPASTLSRRITELEHAIGIRLLNRSTRRLGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G+ + + +L E+ E + +G LRI+ L Q LL ++EF YP Sbjct: 61 EAGAIYYEHCRRLIDQLRLAHEEIVEMNGSLTGTLRISLPDGLAQMLLPSMMREFGRRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 I + N+ +D + D A+R R+P L+ +++ + YA+P YL Sbjct: 121 RITCDFHMGNEILDSISNTFDLALRFGRQP--DYELVAHRILMLPSELYASPAYLAERGA 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236 P++ ++L +H + D + W + +G I + + + Sbjct: 179 PVTPEDLVEHECLRISD----SQDRSTW--ELLNGVGAKHIDVTGRMTASHAGGLAHLAS 232 Query: 237 LGSGIALLPDY-IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIA LP + +++ N LVRI+ D +Y P + K +AF +FI Sbjct: 233 AGLGIAPLPAFDMMRRNVRAAGLVRILPDWSLAPIPLYALLPTS-SVPAKTRAFLSFI 289 >gi|260777805|ref|ZP_05886698.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] gi|260605818|gb|EEX32103.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC BAA-450] Length = 299 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 18/288 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V GSF+ AE +L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDIILFSQVVELGSFSKVAEINNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + SG ++++ G +L + EF L+P + + Sbjct: 64 LTHGAKNVKQAAQEAMDAVSGFGESISGHIKMSVPSISGDLILADAVAEFCNLHPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +P+ ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIKPED 182 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L HN + + E N++ V ++ ++ + + G Sbjct: 183 LVTHNCLQYAYQTTGASEWEFKSKSGNYIVKVS--------GSFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA +P +V N LV + +++ +Y YP + K+K Sbjct: 235 GIAYVPRCLVYHDIRNGQLVDLFPELVGKRLGIYAVYPFTRQPPNKVK 282 >gi|237749257|ref|ZP_04579737.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229380619|gb|EEO30710.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 303 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 127/275 (46%), Gaps = 12/275 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F GS AA ++ + R+I LE +GIKL +R R LTLTE+G+ Sbjct: 6 QIEAFVNATEKGSLAKAALGQGVTPVMLGRRIDALERRLGIKLMHRTTRHLTLTERGTVF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +L+ + + E K +G L ++ G+ + + FL PD++I Sbjct: 66 FDQCKKILDELDQAEKMIGEGLNKATGHLIVSAPAAFGRKHVAPHAPAFLAANPDVKISF 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D+ + D +IR+ I SLI L + H AAP YL+ P ++++L Sbjct: 126 NLSDQVVDLVREGYDLSIRIGGTI-DPSLIAVNLYSNHRVVCAAPDYLEKHGVPKNLKDL 184 Query: 187 DKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +HN +TF G + N + R G L N + ++C+ G G+A Sbjct: 185 SQHNCLTFNLQGGQQRGWHFNENNKTVIIRTAGN-----LDCNDGELLHRWCLEGYGLAW 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 + ++ + LV +++D P++ + YP+ Sbjct: 240 RSTWEIQSELASGKLVTVLDDYALPNYDIMAVYPQ 274 >gi|91782814|ref|YP_558020.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686768|gb|ABE29968.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 297 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 17/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++RVF +A SFT A++ L + +++++ + +E +G +L R R + LT G Sbjct: 4 FEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTHDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + +E + E S++ P G LR+ L ++ + L FL +P+I++ Sbjct: 64 AYYRRCVRLIADME--EAEGSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SS++ R++ + A+P YL EP Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLAAYGEPADPS 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H + + G +P +FN R + S + V + G Sbjct: 181 ALSTHRAVNYVSSATGKAVPL---EFN---VAGREVAMVLPSAVSVTGTELYTGSALSGL 234 Query: 240 GIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P Y V R I+ D P V YP+ + + +++ F ++ Sbjct: 235 GIVQVPQYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWL 288 >gi|254000400|ref|YP_003052463.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253987079|gb|ACT51936.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4] Length = 318 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A+ GS + AA L +S + S + LE+E+G+ LF R R L LT +G +L Sbjct: 18 LELFITTAQYGSLSAAARSLEISPAVASAALKRLESELGVLLFVRTTRSLRLTAEGERLL 77 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++L EL G+L ++ DLG+N++ L EF +PD+ +++ Sbjct: 78 ARSQPLINELRDLADELVAGHSLIRGELSLSLPSDLGRNVILPWLDEFQQQHPDLHLRVQ 137 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186 L ++ D+ + D AIR +P SS + LVT + AAPHYL P S EL Sbjct: 138 LSDRIADVMREPVDVAIRYGQPPDSSQ-VALPLVTDNRRVLCAAPHYLATHGTPSSPAEL 196 Query: 187 DKHNLITF 194 +HN + F Sbjct: 197 SQHNCLCF 204 >gi|238751465|ref|ZP_04612957.1| Glycine cleavage system transcriptional activator [Yersinia rohdei ATCC 43380] gi|238710332|gb|EEQ02558.1| Glycine cleavage system transcriptional activator [Yersinia rohdei ATCC 43380] Length = 305 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AA++L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + + L +L + AP L Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLL----------- 174 Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238 + +H L DL + +WLA R +G P+I+ Q + ++Q V G Sbjct: 175 MGEHGLKVPADLANHTLLHDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 233 Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIAL+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 234 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gi|190892871|ref|YP_001979413.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190698150|gb|ACE92235.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|327194721|gb|EGE61566.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 298 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 124/295 (42%), Gaps = 17/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A ++L ++Q+++S QI LE VG LF R R + LTE Sbjct: 7 FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---DGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ID + + D IR L +L+ + +P ++ Sbjct: 124 AVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIKE 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++L K +L GD+ K + + D RP Q+ S + G Sbjct: 183 PRDLLKFDLFDAGDVWWKQWFEAAGVTETDLDRRPRN-------QLGSQAVEADAAIAGH 235 Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A+L L R+ E + + YPE +N K+KAFRN+I Sbjct: 236 GVAILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290 >gi|167590367|ref|ZP_02382755.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 288 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 64/284 (22%), Positives = 134/284 (47%), Gaps = 10/284 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F + R + AA L + Q+++ R+++ LE +G LF R + G LT Sbjct: 1 MNWDDARIFVALHRERTLRAAARALDIDQATVGRRLAALEHALGATLFLRTSAGYELTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G R + Q + +G+++++TT L Q + ++ +PD+ Sbjct: 61 GRIAIRAAEAMEQSAHDLVRHTQGVDKRLAGEVKLSTTDALAQEYVMPAIERLHAKHPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L + ++++ AD AIR KP ++ L+ R+L + + +A+P Y++ EP+ Sbjct: 121 SVLLDTTTQVLNLAKREADIAIRTVKP-RNPDLLARRLASWEVGLFASPDYVRRHGEPVP 179 Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + H+L+ + K + F V P+ + RI ++N+ L++ G G+ Sbjct: 180 GERFAGHDLVVYQPHFAKARVPSF-----VGEPLADGRIVA-RLNTNLTLRAALKAGLGL 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLK 284 +P + + LVR+ D + + ++ + L++T +++ Sbjct: 234 CEIP-VPMGERDGLVRVWPDRANDAQYEIWLVTHQDLRHTARIR 276 >gi|251788358|ref|YP_003003079.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247536979|gb|ACT05600.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 319 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 1/182 (0%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +GSF A L +S +++S+ ++GLE +G++L R R L LT++G+ R Sbjct: 13 FVQAVDTGSFAAAGRTLGISSAAVSKNVAGLEQTLGVRLMNRTTRTLNLTDEGAAFLRQA 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 L+ L E + G +R++ ++ G + L L + YP + I+ D+ Sbjct: 73 RIALEALDAAVDVLAEQRAEIGGHVRLSCSVGFGHDHLMPVLPGLQVRYPSLTIEADFDD 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ D D AIR + I S+L+ R + ++M A+P YL P + Q+L H Sbjct: 133 RVVDLVRDGYDLAIRGGQ-IVDSALVSRPICRLNMALVASPDYLARAGVPATPQDLPSHR 191 Query: 191 LI 192 LI Sbjct: 192 LI 193 >gi|163746630|ref|ZP_02153987.1| transcriptional regulator, LysR family, putative [Oceanibulbus indolifex HEL-45] gi|161379744|gb|EDQ04156.1| transcriptional regulator, LysR family, putative [Oceanibulbus indolifex HEL-45] Length = 326 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 11/273 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +WD LR+F VAR S + A + L L +++ R+++ LE + LF + +G LT Sbjct: 21 MEQNWDDLRLFLAVAREESLSGAGKLLRLDPATLGRRMARLEKSLQTVLFVKSPQGYALT 80 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L + + + S + +G++R+ LL P Sbjct: 81 EAGSDLMQRAERAEQAMRAATAGVPVQSDQLTGQIRVGAPDGAANYLLPQVCAAIAAENP 140 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D+ +Q+I + ++S AD AI + P + L+ +K+ H+H AA YL E Sbjct: 141 DLDVQIIALPRVFNLSRREADMAIGVSAPT-AGRLVVQKVTDYHLHLAAAESYLAQHPEV 199 Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 S+ +L H ++ + IP + D ++LA +G R++ L NS ++ G Sbjct: 200 TSVTDLQGHRMVGY---IPDMIFDRELDYLAD----LGVSRVA-LASNSVSVQVRMIQQG 251 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271 GI + D+ + + RI+ D ++ Y Sbjct: 252 GGIGVAHDFSLAATQGVRRILTDAVSLKRAFYL 284 >gi|33600190|ref|NP_887750.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33567788|emb|CAE31702.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 317 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 7/284 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F +A +GS T AA +L S ++SR ++ LE ++G++L +R R L L+E G Sbjct: 5 EDLETFIHIAEAGSLTQAARRLDRSLQAVSRTLAALEQDLGVQLVHRSTRRLALSEAGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++++ E PSG LR+ + G + L + +++ YP + + Sbjct: 65 YYHRIKPAIAAIAQARLDIAERRAAPSGTLRVGAPVLFGPDFLVPVIADYMRAYPQVHVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D++ + D +R+ + S L R+L + + AP Y P +E Sbjct: 125 LQLTDAFADLADEGLDLVVRIGD-LPDSGLQGRRLGALRRVVFGAPAYFAQHGRPTHPEE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H I + P +A R +G + N+ +I G GI P Sbjct: 184 LRQHACIVR-TVDPHPGRWVFQIAGKRRTVGV--RGAFRANTMAAIYSAVSAGLGIGYSP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + ++ D + ++ED ++ + E K++AF Sbjct: 241 LWQIQRLLDAGQVETVLEDFEPRPVPIHVLWQENRLMPAKVRAF 284 >gi|317494219|ref|ZP_07952635.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917992|gb|EFV39335.1| LysR substrate binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 306 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT A QL +S SSIS+ IS LE E+ IKL R R + LTE G Sbjct: 6 RMAVFAKVVECGSFTSAGRQLEMSVSSISQTISKLENELNIKLLNRSTRSIGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ ++ + + ++ + P+G LRI ++ + QN++ L YP + I L Sbjct: 66 YQGCRKMLLEAQEVHEQIYAFNNTPTGTLRIGSSSTMAQNVIAPMTARMLREYPGLSIDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D +R+ +Q SSL ++L ++ M AA YL+ P Sbjct: 126 VTGVPAPDLIADGLDLVVRV-GALQDSSLFSKRLGSMPMVVCAAKSYLQQQGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQ 233 P + F+WL RP E P L++ N ++++ Sbjct: 181 ------------PSDIASFSWLTYSVRPDSEFELIAPEGQTLRLSPQGRFVTNDSQTLIR 228 Query: 234 YCVLGSGIALLP 245 + G GIA +P Sbjct: 229 WLCAGVGIAYVP 240 >gi|306845495|ref|ZP_07478065.1| LysR family transcriptional regulator [Brucella sp. BO1] gi|306274106|gb|EFM55931.1| LysR family transcriptional regulator [Brucella sp. BO1] Length = 325 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 27 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 86 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 87 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + AAP YLK P +I++L Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 205 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ NS + + + G GIA + Sbjct: 206 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306 >gi|218889824|ref|YP_002438688.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218770047|emb|CAW25809.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 317 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT A++QL+ + + +SR ++ LET + +L R R + LTE G + Sbjct: 6 NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+GKL++ + +GQ+ + + + Y D+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D AI + + S I +++ + A+P YL+ P EL Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H+ + L+ + WL D P G+ +S QVN ++ + G GI Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y ++ LVR++ VY YP K+K + ++ Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYL 291 >gi|207722889|ref|YP_002253323.1| hypothetical protein RSMK05546 [Ralstonia solanacearum MolK2] gi|206588073|emb|CAQ18653.1| hypothetical protein RSMK05546 [Ralstonia solanacearum MolK2] Length = 297 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 138/284 (48%), Gaps = 24/284 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V +GS T AAEQL + S +SR + LE ++ L R R L LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + ++ + + +P+G LR+ + +++ + +F YP Sbjct: 61 DEGAAFLAHARGILTAVDEAEELIALRRQQPAGCLRVNAAMPFMLHVIAPLVADFRAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++L ++ ID+ + D AIR+ ++ S+L R+L T + A+P YLK P Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GTLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------ISCLQVNSYLSIMQY 234 +I++L H L+ F + P+ + +W P+ P + L+ +S ++ Q Sbjct: 180 RTIEDLRHHALLGF--VQPESLN--HW------PLRGPHGDRLRIVPTLKASSGETLRQL 229 Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMED----VITPSFTVYF 271 + G+G+ L D++ + +LV+++ D ++ P VY+ Sbjct: 230 ALQGAGLVCLADFMTAADRRAGDLVQVLPDATVEILQPIHAVYY 273 >gi|182677574|ref|YP_001831720.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633457|gb|ACB94231.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 304 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 17/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF + GSF AAE L L S+ + + LET +G++L R R + T G Sbjct: 5 DAMRVFVRIVERGSFVRAAEDLGLPPSTATDAVKQLETRLGVRLLQRTTRQVRTTLDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + + +E + E S P G LR+ + + L F YPD+++ Sbjct: 65 YYRRCLAILNDIE--EAESAFSGALPRGLLRVDVQGTQARRFIVPALPRFFADYPDLELF 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DCA+R +P + S +I R++ + A+ +Y+ P Sbjct: 123 MSEGDRFVDLVGEGIDCALRTGEP-KESDIIARRIAMLPEVTVASANYIGRFGHPQRWDA 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LD H +I F G ++P TV P S L VN + G G Sbjct: 182 LDGHRMIGFRSSATGGVLPLEFMVNGTRKTVTLP------STLAVNGADTYKAAAQQGLG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDV--ITPSFT-VYFCYPEALKNTGKLKAFRNFI 290 + +P Y V+ + R++E + PS T VY YP + + + +++ F ++ Sbjct: 236 LIQVPRYSVEQDLAEGRLLECLPETPPSPTPVYVLYPRSRQLSLRVRVFIEWV 288 >gi|104781820|ref|YP_608318.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110807|emb|CAK15520.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 300 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 12/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F V +GSFT AAE+L ++++ +S+Q++ LE E L R R + TE G Sbjct: 9 NRLAYFTAVVETGSFTAAAERLGITKAVVSQQVARLEREFRTTLLVRSTRRVRTTEAGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + E EL S+ +P+G LR+ D G ++ + EF YP +++ Sbjct: 69 FYYRCASILKEAEEAFEELSASASEPTGTLRLTAPFDYGIGVVVPVITEFSQRYPQCKVE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ D +IR+ I L R++ AAP + E Sbjct: 129 VHFSDQTLDLGTHDLDLSIRV-GWITEQHLQARRIGDFEQRLVAAPQWRARMDALQHPTE 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L + L+ L E W +R + E + S + +N+ L++ + + G+G++ Sbjct: 188 LAELPLVANTAL----REPTRWAFARGESERVVVEMK-SSVSLNATLAVREATLQGAGLS 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +LPDY+ + L+ ++ P ++ +P A ++ F + K Sbjct: 243 VLPDYVAAPDLEAGRLIEVLPGWALPRGEIHVVFPTARFRPVNVRVFTELLARK 296 >gi|23499940|ref|NP_699380.1| LysR family transcriptional regulator [Brucella suis 1330] gi|161620258|ref|YP_001594144.1| hypothetical protein BCAN_B0178 [Brucella canis ATCC 23365] gi|163844367|ref|YP_001622022.1| hypothetical protein BSUIS_B0181 [Brucella suis ATCC 23445] gi|254699474|ref|ZP_05161302.1| LysR family transcriptional regulator [Brucella suis bv. 5 str. 513] gi|254702597|ref|ZP_05164425.1| LysR family transcriptional regulator [Brucella suis bv. 3 str. 686] gi|254706271|ref|ZP_05168099.1| LysR family transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|254711436|ref|ZP_05173247.1| LysR family transcriptional regulator [Brucella pinnipedialis B2/94] gi|256014964|ref|YP_003104973.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|256029934|ref|ZP_05443548.1| LysR family transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|256043097|ref|ZP_05446041.1| LysR family transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|256059587|ref|ZP_05449785.1| LysR family transcriptional regulator [Brucella neotomae 5K33] gi|256111917|ref|ZP_05452873.1| LysR family transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|256157762|ref|ZP_05455680.1| LysR family transcriptional regulator [Brucella ceti M490/95/1] gi|256253270|ref|ZP_05458806.1| LysR family transcriptional regulator [Brucella ceti B1/94] gi|261220386|ref|ZP_05934667.1| transcriptional regulator [Brucella ceti B1/94] gi|261313717|ref|ZP_05952914.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261319041|ref|ZP_05958238.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261323554|ref|ZP_05962751.1| transcriptional regulator [Brucella neotomae 5K33] gi|261749926|ref|ZP_05993635.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261753179|ref|ZP_05996888.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265986955|ref|ZP_06099512.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265989532|ref|ZP_06102089.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993366|ref|ZP_06105923.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265996265|ref|ZP_06108822.1| transcriptional regulator [Brucella ceti M490/95/1] gi|23463518|gb|AAN33385.1| transcriptional regulator, LysR family [Brucella suis 1330] gi|161337069|gb|ABX63373.1| Hypothetical protein BCAN_B0178 [Brucella canis ATCC 23365] gi|163675090|gb|ABY39200.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|255997624|gb|ACU49311.1| transcriptional regulator, LysR family [Brucella microti CCM 4915] gi|260918970|gb|EEX85623.1| transcriptional regulator [Brucella ceti B1/94] gi|261298264|gb|EEY01761.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261299534|gb|EEY03031.1| transcriptional regulator [Brucella neotomae 5K33] gi|261302743|gb|EEY06240.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261739679|gb|EEY27605.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261742932|gb|EEY30858.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262550562|gb|EEZ06723.1| transcriptional regulator [Brucella ceti M490/95/1] gi|262764236|gb|EEZ10268.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263000201|gb|EEZ12891.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|264659152|gb|EEZ29413.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 306 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 8 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 68 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + AAP YLK P +I++L Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ NS + + + G GIA + Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 240 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287 >gi|117922034|ref|YP_871226.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614366|gb|ABK49820.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 293 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 9/247 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++ V SG F+ AAE L + + +SR ++ LE+++ + L R R + LT +G Sbjct: 6 DDLQILLTVVDSGGFSAAAEALDIQVARVSRAVTKLESQLQVTLLNRTTRRVELTNEGRL 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + EL +P GKLR+ + + + EF LYP+I+++ Sbjct: 66 FVDAVRLGLQTIQLAEEELMSRGEQPKGKLRVDAASPFVLHQIVPLVHEFKQLYPEIELE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ K + S+L R L +H A+ YL P S+ E Sbjct: 126 LTSNEGFVDLIEKRTDVAIRIGK-LTDSTLHARPLGKSKLHIVASKEYLAKRGLPKSVSE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H+LI F L T+ + ++ ++ ++ Q + G+GIA L Sbjct: 185 LNHHSLIGFTGAKVLNQWPLKGLETI--------VPTMRASNGETVRQLALAGNGIACLS 236 Query: 246 DYIVKDN 252 ++V D+ Sbjct: 237 GFMVSDD 243 >gi|269965803|ref|ZP_06179898.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B] gi|269829538|gb|EEZ83777.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B] Length = 334 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 94/189 (49%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 32 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 91 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T + L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 92 FLDKTMQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 151 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ + A+P Y+ E S + Sbjct: 152 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELASPAD 211 Query: 186 LDKHNLITF 194 L +HN + + Sbjct: 212 LTQHNCLCY 220 >gi|254429073|ref|ZP_05042780.1| LysR substrate binding domain protein [Alcanivorax sp. DG881] gi|196195242|gb|EDX90201.1| LysR substrate binding domain protein [Alcanivorax sp. DG881] Length = 301 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 132/296 (44%), Gaps = 19/296 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F A+ + + +S +SR+++GLE +G++L R +R ++TE G Sbjct: 3 DLNDLFYFAKVVEFGGFAPASRAITVPKSKLSRRVAGLEERLGVRLINRSSRQFSVTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + E+ Q + + +P G +R+A I L + L +F+ YP+I Sbjct: 63 QQYYEHCKAMLVEAESAQEAIDTVTAEPRGVIRLACPITLLHVHIGSFLADFMKQYPEIT 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L N+ +D+ + D AIR+R P ++ S L+ R L + A+P + P Sbjct: 123 VHLEATNRRVDVISEGVDVAIRVRPPGLEDSDLVVRVLSDRRLALVASPELVAQYGMPGH 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVD----RPIGEPRISCLQVNSYLSIMQYCVL 237 QEL + G P DF W L D R +PR +++ + V Sbjct: 183 PQELSSWPSLGLGTPRP----DFRWSLRGEDGSEVRVFYQPRYVT---TDMIALRRAAVA 235 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP V+ + LV+++ ++ +P G L A R I Sbjct: 236 GVGVVQLPILTVQHQLERGELVQLLPRWALAKDIIHAVFP---SRRGMLPAVRTLI 288 >gi|167584782|ref|ZP_02377170.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 323 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EFL YP+ Sbjct: 65 AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTVSQTMLSRILPEFLHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P +++++I R L AP L P Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPENANIIVRPLWRTEQMLVGAPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L +L + + + + FN +A P G +PR L ++I + Sbjct: 185 LVPDDLAHFETLDTPSVDGRHV--FNLIA----PDGTKHVHEHDPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R+F+ Sbjct: 236 AVLDGVGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRSFV 292 >gi|194367669|ref|YP_002030279.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350473|gb|ACF53596.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 300 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 28/302 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+++ F V SGS + AAEQL + S +SR + LE ++GI L R R L LT Sbjct: 1 MKTTLDEMQAFLSVIDSGSISAAAEQLGQTPSGVSRALGRLEDKLGITLLTRTTRRLHLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G R + +E+ + ++ +P+G+LR+ + +++ + + YP Sbjct: 61 AEGEAFLRHARAIIDAVESAEEQMAARRERPAGRLRVDAAMPFVLHVIAPLVAGYRARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++Q++L ++ ID+ D AIR+ P+ S+L R L + A+P YL EP Sbjct: 121 EVQLELNSSDRYIDLLERRTDLAIRI-GPLADSTLHARLLGRCQLRLVASPAYLARHGEP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYC 235 S+ L +H L++F + P+ + + D RP + V+S ++ + Sbjct: 180 ASVAALGQHTLLSFNE--PESLNRWPLPGESDGLLLVRP-------DIAVSSGETLRRLA 230 Query: 236 VLGSGIALLPDYIV---KDNPNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAFRN 288 V G GI L D++ + LV+++ DV P VY+ +NT + Sbjct: 231 VEGVGITCLSDFVTDRDRSAGTLVQVLAAQTLDVYQPIHAVYY------RNTAVSSRISS 284 Query: 289 FI 290 F+ Sbjct: 285 FV 286 >gi|37222138|gb|AAP49331.1| Uvs050 [uncultured bacterium] Length = 307 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 145/295 (49%), Gaps = 28/295 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A + SF+ AA L L+ +++S+ ++ LE ++G++LF R R LTLTE G Sbjct: 10 FVRSAETSSFSAAARLLGLTPAAVSKNVATLEGKLGVRLFQRSTRRLTLTEAGEAF---L 66 Query: 71 SEVYHKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV L+T Q L +S +PSG L+++ G+ + L +F+ YPDIQ Sbjct: 67 LEVSGGLDTVQAALANASRNRGQPSGTLKVSLAFAFGRQYILPLLADFMAKYPDIQPDWR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +N+ +D+ + D AI + S ++ R+L +M A+P +L + + P + ++ Sbjct: 127 FENRQVDLINEGIDVAIGGGIEL-SPGVVARELARPYMVLVASPGFLADQKMPKVLADIT 185 Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + I G + P + + N ++ + EP+ + +N +I ++G G+A Sbjct: 186 AWDAIVRRSSNTGRIQPWQLRNKN----NEQEMVEPKARVI-LNDPEAICNAALMGVGVA 240 Query: 243 LLP-----DYIVKDNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290 L+P +Y+ + +L+R++ + +YF + L K +AF +F+ Sbjct: 241 LVPMPHVLNYL--QDGSLIRLLPKWYSDVGPLAIYFSSSKLLP--AKTRAFVDFV 291 >gi|86360876|ref|YP_472763.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284978|gb|ABC94036.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 302 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 141/294 (47%), Gaps = 19/294 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++++F + SF AA L L++S+ + I LE ++G++L R R + T G+ Sbjct: 10 DRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEDDLGVRLLERTTRHVAPTLDGAA 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + +++ + ++ ++P G LR+ L + L L EFL YP + +Q Sbjct: 70 FYRRCVAILAEVDEAENVFRD--MQPRGLLRVDAHPLLTRTFLLPRLNEFLDRYPLLDLQ 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC IR + I S LI R+L I A+P Y+ P S Sbjct: 128 IGQGDRLVDLVREGIDCVIRAGE-IADSGLIMRRLGMIAEITCASPAYIARHGVPRSPDA 186 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 ++ H + F G ++P +F +TV R + P C L VN+ ++ LG Sbjct: 187 MEGHRAVGFISSRTGQVMPL---EFTVGSTV-RSVTLP---CRLTVNNSDTMSDLARLGF 239 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ P Y ++ D LV ++ D + P + YP+ + + +++ F ++I Sbjct: 240 GLIQAPRYRLQRDLDEGTLVEVLADFLPPPTPLTALYPQNRQLSPRVRVFLDWI 293 >gi|83950162|ref|ZP_00958895.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] gi|83838061|gb|EAP77357.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] Length = 295 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 6/245 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VAR SFT AA++L L+QS++SRQI LE ++G LF R R + LT++G L Sbjct: 3 QLHSFEAVARRMSFTAAADELCLTQSAVSRQIRALEEDLGRALFLRKHRAIELTQEGRDL 62 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ L+ +S P ++ +AT++ L L+ F YP+I +++ Sbjct: 63 FEAVTRGLDEIALAVNGLRRASDTP--QITVATSVAFSYYCLMPRLERFADRYPEIDLRI 120 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D+ D AD A+ L + R+L ++ + YL+N E +L Sbjct: 121 LATDQLVDLGKDDADVAV-LFGDGNWPGVEARRLFGERVYPVCSAGYLQNHPELRRPSDL 179 Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L+ G I ++ WL G+P +++NSY ++Q G G+AL Sbjct: 180 LDQTLLHLDGGGTIWGAVDWHAWLVQ-QGVTGQPVRRGIRLNSYPMVLQGAEAGRGVALG 238 Query: 245 PDYIV 249 YI Sbjct: 239 WSYIT 243 >gi|117919540|ref|YP_868732.1| LysR family transcriptional regulator [Shewanella sp. ANA-3] gi|117611872|gb|ABK47326.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3] Length = 307 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 12/279 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +VF + GS AAE L +S+S ++R ++ +E G +L +R R L+LT+ G + Sbjct: 5 EAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTDAGEQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + S +P G LRI+ + + LL ++ +L YP + Sbjct: 65 VLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQASVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D AIR+ + +LI R+L AAP YL + ++ Sbjct: 125 FHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLASHSAITHPED 183 Query: 186 LDKHNLIT---FGDLIPKCMED-FNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237 L +HN +T FGD++ + + AT + +G+ P L N + ++ + Sbjct: 184 LTRHNCLTYSYFGDVMWRFTQTPIAVKATPTQEVGQIFNIPVKGNLSANDSMVVLNATLA 243 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 G GIA+ P + K D+ LV ++ + S VY Y Sbjct: 244 GEGIAMQPLWAAKPHLDSGALVPLLREFKPQSLGVYGVY 282 >gi|22127030|ref|NP_670453.1| DNA-binding transcriptional activator GcvA [Yersinia pestis KIM 10] gi|45442590|ref|NP_994129.1| DNA-binding transcriptional activator GcvA [Yersinia pestis biovar Microtus str. 91001] gi|51597332|ref|YP_071523.1| DNA-binding transcriptional activator GcvA [Yersinia pseudotuberculosis IP 32953] gi|108806497|ref|YP_650413.1| DNA-binding transcriptional activator GcvA [Yersinia pestis Antiqua] gi|108813133|ref|YP_648900.1| DNA-binding transcriptional activator GcvA [Yersinia pestis Nepal516] gi|149366970|ref|ZP_01889003.1| glycine cleavage system transcriptional activator [Yersinia pestis CA88-4125] gi|153947641|ref|YP_001399983.1| DNA-binding transcriptional activator GcvA [Yersinia pseudotuberculosis IP 31758] gi|162419649|ref|YP_001607574.1| DNA-binding transcriptional activator GcvA [Yersinia pestis Angola] gi|165927121|ref|ZP_02222953.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Orientalis str. F1991016] gi|165939821|ref|ZP_02228361.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Orientalis str. IP275] gi|166011919|ref|ZP_02232817.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Antiqua str. E1979001] gi|166211648|ref|ZP_02237683.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Antiqua str. B42003004] gi|167400001|ref|ZP_02305519.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419823|ref|ZP_02311576.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425269|ref|ZP_02317022.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023301|ref|YP_001719806.1| DNA-binding transcriptional activator GcvA [Yersinia pseudotuberculosis YPIII] gi|186896438|ref|YP_001873550.1| DNA-binding transcriptional activator GcvA [Yersinia pseudotuberculosis PB1/+] gi|218928197|ref|YP_002346072.1| DNA-binding transcriptional activator GcvA [Yersinia pestis CO92] gi|229837736|ref|ZP_04457896.1| DNA-binding transcriptional dual regulator [Yersinia pestis Pestoides A] gi|229840958|ref|ZP_04461117.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843059|ref|ZP_04463209.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903576|ref|ZP_04518689.1| DNA-binding transcriptional dual regulator [Yersinia pestis Nepal516] gi|270487357|ref|ZP_06204431.1| LysR substrate binding domain protein [Yersinia pestis KIM D27] gi|294503046|ref|YP_003567108.1| glycine cleavage system transcriptional activator [Yersinia pestis Z176003] gi|21960079|gb|AAM86704.1|AE013916_1 positive regulator of gcv operon [Yersinia pestis KIM 10] gi|45437455|gb|AAS63006.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Microtus str. 91001] gi|51590614|emb|CAH22255.1| glycine cleavage system transcriptional activator [Yersinia pseudotuberculosis IP 32953] gi|108776781|gb|ABG19300.1| glycine cleavage system transcriptional activator [Yersinia pestis Nepal516] gi|108778410|gb|ABG12468.1| glycine cleavage system transcriptional activator [Yersinia pestis Antiqua] gi|115346808|emb|CAL19694.1| glycine cleavage system transcriptional activator [Yersinia pestis CO92] gi|149290584|gb|EDM40660.1| glycine cleavage system transcriptional activator [Yersinia pestis CA88-4125] gi|152959136|gb|ABS46597.1| glycine cleavage system transcriptional activator [Yersinia pseudotuberculosis IP 31758] gi|162352464|gb|ABX86412.1| glycine cleavage system transcriptional activator [Yersinia pestis Angola] gi|165912224|gb|EDR30861.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Orientalis str. IP275] gi|165921017|gb|EDR38241.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Orientalis str. F1991016] gi|165989185|gb|EDR41486.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Antiqua str. E1979001] gi|166207419|gb|EDR51899.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Antiqua str. B42003004] gi|166962564|gb|EDR58585.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050709|gb|EDR62117.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055669|gb|EDR65453.1| glycine cleavage system transcriptional activator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749835|gb|ACA67353.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis YPIII] gi|186699464|gb|ACC90093.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis PB1/+] gi|229679346|gb|EEO75449.1| DNA-binding transcriptional dual regulator [Yersinia pestis Nepal516] gi|229689935|gb|EEO81994.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229697324|gb|EEO87371.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704113|gb|EEO91125.1| DNA-binding transcriptional dual regulator [Yersinia pestis Pestoides A] gi|262361082|gb|ACY57803.1| glycine cleavage system transcriptional activator [Yersinia pestis D106004] gi|270335861|gb|EFA46638.1| LysR substrate binding domain protein [Yersinia pestis KIM D27] gi|294353505|gb|ADE63846.1| glycine cleavage system transcriptional activator [Yersinia pestis Z176003] gi|320014161|gb|ADV97732.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 305 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 17/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR SFT AAE+L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + S L +L + AP L + Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWSGLRTERLYAEFLLPVCAPSLLTGENGLKVPSD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242 L H L+ +WLA R +G P+I+ Q + ++Q V G GIA Sbjct: 186 LANHTLL-------HDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIA 237 Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 L+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 238 LVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gi|257094595|ref|YP_003168236.1| LysR family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047119|gb|ACV36307.1| transcriptional regulator, LysR family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 312 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 17/243 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F+V AR SFT AA +L ++QS++SR+I LE ++G LF+R R L LT+ G +L+ Sbjct: 12 VRGFWVAARHLSFTRAAAELFVTQSAVSREIKKLEEQLGQPLFHRVNRTLQLTQAGEELY 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R E ++ L + V+ S L + TTI L L L F P I ++++ Sbjct: 72 RAVDEALALIDAATDRL--AGVERS--LTVTTTIPLASLWLVPRLPRFTQRQPAIDVRIV 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186 N +D+ + D AIR P ++ R LV P +++ PL + +L Sbjct: 128 ASNDVLDLVQAHMDIAIRYASP-GGAAPPGRPLVGYSTFPVCTPALMRDPARPLRTFADL 186 Query: 187 DKHNLITFGDLI-PKCMEDF-NWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +H L+ F + + D+ W + V +P G R S Y +++ + GSG Sbjct: 187 AQHVLLEFETTVHGRPWYDWEQWFSAVKVAKFKPAGRQRFS-----HYDQVVEAAMAGSG 241 Query: 241 IAL 243 +A+ Sbjct: 242 VAI 244 >gi|167620019|ref|ZP_02388650.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 306 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R G++LTE G + + Sbjct: 11 LHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTHGVSLTEAGQRYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +Q + + + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGTPAKVADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|118590278|ref|ZP_01547681.1| LysR family transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118437250|gb|EAV43888.1| LysR family transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 342 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 14/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F + GSF+ AA+ L +SQ ++S+Q+ LE E+GI+L R R L+LTE G + + Sbjct: 22 LSGFVQAVKFGSFSAAAKHLGISQPAVSQQVRALEDELGIRLLNRTTRQLSLTEAGERYY 81 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +L +Q + SG L + + + +L L F L +P I + + Sbjct: 82 AYARDILERLAEADRSVQSEEAQMSGPLSVGLPLGFAETVLSDFLIRFKLDHPGILLDVS 141 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D AIR+ I+ LI R+L A+P YL P +L Sbjct: 142 LSDQFVDVIQQRLDVAIRMGD-IEDDRLIVRRLGLAQRCLVASPDYLDKRGRPAHPDDLK 200 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RIS-CLQVNSYLSIMQYCVLGSGIAL 243 H+ + + ++ F P+GE +IS + VN+ ++ + + G GIAL Sbjct: 201 DHDYLLYKNISTGTRVPFI------SPVGEKLSVKISPTMLVNNSSTLRRAAMAGLGIAL 254 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +++ +L ++ P V+ YP K++ F + +F Sbjct: 255 SNRWLIDPFLRTGDLEVVLPQWQYPPHPVHAVYPSNRFIPLKVRRFVDSLF 305 >gi|107026124|ref|YP_623635.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692692|ref|YP_838225.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170738059|ref|YP_001779319.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254248213|ref|ZP_04941533.1| transcriptional regulator, LysR family [Burkholderia cenocepacia PC184] gi|105895498|gb|ABF78662.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116650692|gb|ABK11332.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|124874714|gb|EAY64704.1| transcriptional regulator, LysR family [Burkholderia cenocepacia PC184] gi|169820247|gb|ACA94829.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 290 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 132/291 (45%), Gaps = 23/291 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR SFT AAEQL L+Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 10 LQIFSTVARHRSFTRAAEQLCLTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V E + ++E ++L + L++ T + + + F +PD+ +Q+ Sbjct: 70 PVVDESFARIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D S + D AI + ++ L + AP L+ ++ +L Sbjct: 125 TAWQHVVDFSSEPFDAAI-VYGTSPGPGVVALPLFDERLTPVCAPE-LRQASPLGAVGDL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYCVLGS 239 +H L+ + +W A +D P P L + + ++ + V Sbjct: 183 ARHTLLH------PTRDHRDWRAWLDHAGERGVDPARGPTFDTLDLATNAAMQGFGVAIG 236 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ D + L R + V+ +F YPE L + K++AF ++I Sbjct: 237 DVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPENLGSQQKIRAFSDWI 285 >gi|94310547|ref|YP_583757.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354399|gb|ABF08488.1| Transcriptional regulatory protein, LysR family [Cupriavidus metallidurans CH34] Length = 305 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 67/288 (23%), Positives = 124/288 (43%), Gaps = 9/288 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD R F VARSG+ + AAEQL ++++R I LE + +LF++ G LT+ G Sbjct: 10 NWDDYRYFLAVARSGTLSAAAEQLGTEHTTVARHIHALERTLNTRLFHKSHTGYALTDAG 69 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L T+E + +G +RI G L + +P ++ Sbjct: 70 ERL-LATAETIEGALLASKAAAAGEQEIAGIVRIGAPDGFGSMFLAPRIHALTERHPRLE 128 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ + ++ AD AI L + + +L M Y YLK + + Sbjct: 129 VEIFAAARIFSLTRREADIAIGLSGA-EHLRVASHRLTDYRMFVYGTKSYLKRAAQIRTK 187 Query: 184 QELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H + + +L+ F+ V+ P R+ C + L+ + + G + Sbjct: 188 ADLAQHPFVGYVEELLFSPELSFSGAVGVELP---ARVRCTNL---LTQVHATLSGHCLC 241 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++P Y+ D P LV ++ D + + T + E + ++A NFI Sbjct: 242 IIPAYVAADFPALVPVLPDAVAVTRTFHMHVHEDHWKSAHVRAVANFI 289 >gi|15599090|ref|NP_252584.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116051932|ref|YP_789225.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254242588|ref|ZP_04935910.1| hypothetical protein PA2G_03342 [Pseudomonas aeruginosa 2192] gi|296387585|ref|ZP_06877060.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313109319|ref|ZP_07795285.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9950077|gb|AAG07282.1|AE004807_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587153|gb|ABJ13168.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] gi|126195966|gb|EAZ60029.1| hypothetical protein PA2G_03342 [Pseudomonas aeruginosa 2192] gi|310881787|gb|EFQ40381.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 317 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT A++QL+ + + +SR ++ LET + +L R R + LTE G + Sbjct: 6 NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+GKL++ + +GQ+ + + + Y D+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D AI + + S I +++ + A+P YL+ P EL Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H+ + L+ + WL D P G+ +S QVN ++ + G GI Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y ++ LVR++ VY YP K+K + ++ Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYL 291 >gi|312959897|ref|ZP_07774412.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311285844|gb|EFQ64410.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 332 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 1/190 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +GSF+ AA QL +S S++SR IS LE + +L R R L L+E G ++ Sbjct: 17 EMAIFVKVVEAGSFSEAARQLSVSPSAVSRSISRLEKALATRLLQRTTRKLRLSEGGEEV 76 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ + + + + G +R++ +G+ ++ ++ EFL YP + +QL Sbjct: 77 FKRCQEMVSAARSVMEVGGQFTHEAEGLVRVSVPKAVGRFVVHPHMPEFLRRYPKVDVQL 136 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 IL+++ +D+ D D +IR+ L+ R+L+ I A P YL P +L Sbjct: 137 ILEDRQVDLIDDNVDLSIRITDS-PPPGLVGRQLLPIEHLLCATPQYLAEHGTPAHPHDL 195 Query: 187 DKHNLITFGD 196 +H+ I G+ Sbjct: 196 LEHSCIYLGE 205 >gi|293412437|ref|ZP_06655160.1| transcriptional activator TtdR [Escherichia coli B354] gi|291469208|gb|EFF11699.1| transcriptional activator TtdR [Escherichia coli B354] Length = 310 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R A G+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSAHGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LVR++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|307727366|ref|YP_003910579.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587891|gb|ADN61288.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 335 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 102/200 (51%), Gaps = 1/200 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + + A SGSF+ A+ +LH+ ++SR+++ LE + +L R R LTLT+ GS Sbjct: 5 EAMSILVAAAESGSFSAASRKLHMPLPTVSRKVAELEAHLNARLLVRSTRKLTLTDAGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++ + P G+L + + G+ + + EFL +P I ++ Sbjct: 65 YLAACKQILEQVSEAENAAAGEYSAPRGELLVTAPVVFGRLHVLPIVSEFLAAFPQITVK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++++ + ++ D A+R+ K + SS+I ++ T+ A+P YL EP S + Sbjct: 125 LVLADRNLHLLDEHIDVALRIGK-LPDSSMIATQVGTVSRVVCASPQYLSRAGEPQSPAD 183 Query: 186 LDKHNLITFGDLIPKCMEDF 205 L + + + F L + DF Sbjct: 184 LARFSCVVFDALPSGSIWDF 203 >gi|50120420|ref|YP_049587.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49610946|emb|CAG74391.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 309 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 24/305 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++++R+F +AR GS T AA +L ++ S+S+ + LE +G LF R R + LT+ G Sbjct: 6 YNQIRIFQSIAREGSITAAARKLEITPPSVSKSLKLLEQHIGHPLFLRTTRRIELTDTGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + TS LE ++ + +PSG +RI + +L+ + EF YP IQ+ Sbjct: 66 QLLQQTSRAVESLENALESIKSLNQEPSGLVRITLSRFAYLLILKPFMAEFCHSYPGIQL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183 ++ + + +++ + D IR I S++ R+L+ YA+ YL P+ Sbjct: 126 EISVYDGTVNMIDERFDLGIRFGD-ILGESVVARQLMKPFREGLYASAAYLAEHPTPVLP 184 Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-- 236 +L +H LI + ++P ++D TVD P G+ +++ + +M + Sbjct: 185 ADLHQHQLIGYRFITNNRILPLMLDDQGEKLTVDMP-GQ------LISNDIDVMADGIRS 237 Query: 237 -LGSGIALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK---LKAFRNFIF 291 LG G P Y ++ D + +M VY Y LK+TGK +KA +F+ Sbjct: 238 GLGIGRMFEPVYELQPDKEQFIPVMMPYWKTYPPVYLYY---LKSTGKAKRVKALIDFLI 294 Query: 292 LKARD 296 +K ++ Sbjct: 295 MKTKN 299 >gi|86138228|ref|ZP_01056803.1| hypothetical protein MED193_01835 [Roseobacter sp. MED193] gi|85825255|gb|EAQ45455.1| hypothetical protein MED193_01835 [Roseobacter sp. MED193] Length = 307 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 7/292 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR+F + + + + A L ++ + S +I+ LE VG L +R R ++L+ + Sbjct: 1 MDTQTLRLFVLACETLNISAAGRTLGMAPAVASTRIAKLERLVGADLLHRSTRKVSLSLE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G E+ + E L + K SG LR A Q L L F+ YPD+ Sbjct: 61 GQDFLPYAREMIAQEEAALAALGKGRTKVSGTLRFAAPSTFAQLYLAPLLPTFMDKYPDL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L + D+ D A+R + SSL RKL A+P YL+ P + Sbjct: 121 RLDLHLSDSQFDLIEGSFDLALR-NAVLADSSLTARKLADDTRILCASPAYLERYGTPAN 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L KH LI F D PK + N + + P + CL +N L+ + G+GI+ Sbjct: 180 PKDLAKHRLIAFKDTEPKALISNNGMQALFDP--KSAAHCLILNDGLTQKLTTLNGAGIS 237 Query: 243 LLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + V++ + L R++ D ++ ++ YP++ + K++ F +F+ Sbjct: 238 VNSLWAVQEEIADGTLTRVLPDYALSTEPALWLIYPKSNVVSAKVRVFMDFL 289 >gi|167836576|ref|ZP_02463459.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 306 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + Sbjct: 11 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYC 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 71 DATAQPYRQVVEARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFHRYPKVSVEI 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL + + R + A P YL P + +L Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLHPGMVGVRIAPALTCALVATPGYLAQHGTPAKVADL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208 >gi|328676170|gb|AEB27040.1| Transcriptional regulator [Francisella cf. novicida Fx1] Length = 298 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 141/291 (48%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 12 FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 72 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + ++ RK+ T A+P Y+ P +I + Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242 L HN I + L + + P+ S + N+ + ++ CVL GIA Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVKD N L+ +++D +Y YP+ K+K F + + Sbjct: 241 QFHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVSLV 291 >gi|255318698|ref|ZP_05359925.1| transcriptional regulator, LysR family [Acinetobacter radioresistens SK82] gi|262378121|ref|ZP_06071278.1| transcriptional regulator [Acinetobacter radioresistens SH164] gi|255304196|gb|EET83386.1| transcriptional regulator, LysR family [Acinetobacter radioresistens SK82] gi|262299406|gb|EEY87318.1| transcriptional regulator [Acinetobacter radioresistens SH164] Length = 293 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 137/310 (44%), Gaps = 34/310 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD L+ F V+AR+ + T+ A + + S++SR+I LE +G LF R A G LT Sbjct: 1 MKVDWDHLQFFLVLARAKTLTNTARIIGVEHSTVSRRIQALELALGTPLFKREATGYELT 60 Query: 61 EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G L RV ++E +++++ G++RI T G L L E Y Sbjct: 61 LEGLALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLAKLLAELSKQY 115 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + I LI K I +S AD I + +P +S I +L + Y + YL Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVISIDRP-KSGPYIITRLSDYCLKIYGSKDYLAASSP 174 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228 +++L +H + + +D I P + CL+ +S Sbjct: 175 IHQLEDLKQHRFVNY----------------IDDLIYSPELYCLERLPLQLSASFRSSSI 218 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 L+ G+G+A+LP ++ + P L +++ + T + L++ ++K + Sbjct: 219 LAQQIAVSAGAGLAILPKFLADEQPELEQVLHKEVRFIHTFWMLTLVDLQHEPRIKLVWD 278 Query: 289 FIFLKARDWK 298 F+ +A ++ Sbjct: 279 FLRTQADKYQ 288 >gi|206561031|ref|YP_002231796.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198037073|emb|CAR52994.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 311 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 12/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R+F VA GSF AA L ++++S + LET +G +L +R R + LT G+ Sbjct: 5 DQVRIFLQVAEMGSFIKAAHALDAPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + G+L + + + ++ L YP +Q+ Sbjct: 65 LLERGRRLLAEADELDRLFRRRDHDVVGRLNVDVPSRIARRVVAPALPSLFRRYPKLQLS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DCAIR+ + + SSL+ R L + A+P YL+ C P Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241 L H G P + W D G+ R+ L VN+ + + C+ G G+ Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCAD---GQRRVLTLPSRVIVNNAETYIASCIAGMGL 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P + V+ + LV +M V YP + +L AF Sbjct: 240 IQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAF 287 >gi|148557931|ref|YP_001257231.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148369216|gb|ABQ62088.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840] Length = 305 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 7 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 67 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + AAP YLK P +I++L Sbjct: 127 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ NS + + + G GIA + Sbjct: 186 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 239 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 240 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 286 >gi|145631679|ref|ZP_01787442.1| lysR-family transcriptional regulator [Haemophilus influenzae R3021] gi|319897817|ref|YP_004136014.1| lysr-family transcriptional regulator [Haemophilus influenzae F3031] gi|144982702|gb|EDJ90238.1| lysR-family transcriptional regulator [Haemophilus influenzae R3021] gi|317433323|emb|CBY81699.1| LysR-family transcriptional regulator [Haemophilus influenzae F3031] Length = 295 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 12/269 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L VF V +GSF+ AA+QL ++ S++SR + LE ++G+ L R R L LT Sbjct: 1 MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + R ++ + + E+ P G LR+ + + + +LL +F YP Sbjct: 61 EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ+ L+ I++ D A+R + + S L R L H A+P YL P Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239 S + L H + F + P + + L P +IS S I++ C+ G Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWTVLDAQGNPY---KISPHFTASSGEILRSLCLSGC 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFT 268 GIA L D++V ++ I E + P T Sbjct: 235 GIACLSDFLVDND-----IAEGKLIPLLT 258 >gi|104783527|ref|YP_610025.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112514|emb|CAK17241.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 315 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA+ GSFT AA QL + +++SR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ + +GQ+ + + + +PD+ L Sbjct: 66 LMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D +I L + S + ++L + A+P Y+ +L Sbjct: 126 TMANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIVCASPEYVARHGTAHKPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 KH + ++ + WL D P G+ + S QVNS ++ G+ Sbjct: 186 LKHACLR---MVSPVIPLEKWL--FDGPEGQEMVNITSSPFQVNSADAMKTAIRSSMGVG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y D + +LVRIM + +Y YP K+K + ++ Sbjct: 241 VLPIYSAIDGLRDGSLVRIMPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291 >gi|114562611|ref|YP_750124.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114333904|gb|ABI71286.1| transcriptional regulator, LysR family [Shewanella frigidimarina NCIMB 400] Length = 328 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 133/281 (47%), Gaps = 25/281 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F+ + +GS AA L+L +S++SR++ LE + +KLF+R +R +TLT GS Sbjct: 24 EDIALFHRIVETGSILEAANLLNLPKSTVSRRLQSLEESLNLKLFHRQSRAITLTSAGSH 83 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLR-----IATTIDLGQNLLQGNLKEFLLLYP 120 + T + L+ T ++ ++ + +G LR I +D+ + F+ P Sbjct: 84 FYEKTLVMLADLDRTLSDITDNKAELTGHLRILIFPIPQIMDIVSKIFA-----FMDENP 138 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I++I + +D+ + D A + + ++ + +++ M +A+P YL P Sbjct: 139 NCSIEIITSTEPLDMVRNNIDIAFMVNETFSELDMVAKPVISEDMCFFASPEYLTKAGMP 198 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV---- 236 +++ ++++HN I F P N + P+ + ++ N + +Q Sbjct: 199 VTLSDIEQHNSILFR--FP------NGKTFSEVPLANDAMQAVKGNLCTNSIQLAYEATK 250 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 LG GI LP + D+ LVR+ D+ + V+ YP Sbjct: 251 LGRGIGYLPQKLCHDDVEQGELVRLFNDLAPYTGVVFLVYP 291 >gi|114561995|ref|YP_749508.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114333288|gb|ABI70670.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] Length = 299 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 20/291 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +++L +F VA+ SFT AA L +S+ +S QI LE EVG L R R + LT QG Sbjct: 12 FERLFLFSEVAKQLSFTEAAASLGISRGYLSEQIRQLEKEVGRPLLIRTTRSVRLTPQGE 71 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +V L ++ + SG++ I L Q L EF L+P + Sbjct: 72 MILSSMGQVKADLLMLDKRIRHDNDDISGRISITAPSQLTQRHLLNICHEFTQLHPQVHF 131 Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + D++ + D A R P Q +++ +KL AAP YL+ P SI Sbjct: 132 SIDCSYTLHDLTRNDFDLAFRATATPPQ--NMVAKKLFDYQQICCAAPAYLQQHGTPDSI 189 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241 ++L H +T E +W +P + SCL VN + Q +LG GI Sbjct: 190 EDLHHHQCLT-------ATEQTHWTFN-----AQPILINSCLSVNDNHMLKQLALLGRGI 237 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + P+Y+V L I+ + T Y +P+ ++ + +L +F F Sbjct: 238 IVGPEYLVDKEIQAGTLQAILTTETMNASTAYLIHPQLVQQSARLSSFIQF 288 >gi|299770577|ref|YP_003732603.1| putative transcriptional regulator [Acinetobacter sp. DR1] gi|298700665|gb|ADI91230.1| putative transcriptional regulator [Acinetobacter sp. DR1] Length = 296 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/274 (24%), Positives = 131/274 (47%), Gaps = 8/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F +VAR GSFT AA ++ +SQS++S I GLE +G+ L R R ++ T G Sbjct: 6 NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + S + +++ L +P+G +RI + + +L LK+ YPD+Q Sbjct: 66 ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGDYPDVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +DI + D +R + + R + M A P Y + P + Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMAVIATPAYFEQYGIPNTP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 ++L H I G + + W D + +I + N I++ G G+A Sbjct: 186 KDLINHQCI--GYRLTTQGSVYAWEFVKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243 Query: 243 LLPDYIVKDN---PNLVRIMED--VITPSFTVYF 271 +P+ +++++ L++++ + + P + +Y+ Sbjct: 244 YIPEDLIREDLKEGTLIQVLAEYSIQFPGYHLYY 277 >gi|92112283|ref|YP_572211.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795373|gb|ABE57512.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 307 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 28/297 (9%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L++ +A SGS A L +S +++ R++ LE+ +G++LF RH G T G Sbjct: 22 WEDLKIVQAIADSGSLAGAGRTLGISHATVFRRLGALESRLGVRLFERHRTGYVPTLAGD 81 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + V +E + L + SG LR+ TT L +L L F YP I + Sbjct: 82 DLATTAARVALDIEAVERRLMGRDARLSGTLRVTTTDTLLMGMLSDELAGFQRTYPHIVL 141 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQS--SSLIQRKLVTIHMHAYAAPHYLKNC-REPL 181 ++ + N+ D+S AD AIR P + +LI R++ I A Y+ C RE Sbjct: 142 EVEVSNRTYDLSRRDADVAIR---PTSAPPETLIGRQVGQI-----AQAVYVSRCHRETS 193 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 D H L +E + VD C V+S L ++ G G Sbjct: 194 GWVGPDPH-------LGYPVLERWMARQGVD-------AQCRYHVDSMLGMLAGVRSGMG 239 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 +LP Y+ +LVR E + ++ L+NT +++A ++ LKAR Sbjct: 240 RGVLPCYLADMADDLVRASEPLPELQTELWLLTHPDLRNTARVQALFAYLSDSLKAR 296 >gi|146305106|ref|YP_001185571.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145573307|gb|ABP82839.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 317 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 137/304 (45%), Gaps = 37/304 (12%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF AR SFT AA + SQ +IS+QI LE ++ ++LF R RGL LTE G Sbjct: 11 DSLRVFESAARLLSFTAAANEQGSSQPAISQQIKRLEQQLAVRLFDRVHRGLVLTEAGEL 70 Query: 66 LHRVTSEVYHKLET---TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 L R E H L++ + Q+ V L++AT L L+ F L+P++ Sbjct: 71 LLRYVQEGLHSLDSGLQAVVARQQHEV-----LQVATDFAFAAYWLMPRLQRFHQLHPEV 125 Query: 123 QIQLILDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 + L+ +D ID+++ + D + SL+ L + +PH L Sbjct: 126 DVSLVTTERDLGGNLPGEIDVAISFGDGRCK-----HGESLL---LFGEEVFPVCSPHLL 177 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIG---EPRISCLQVNSYL 229 REP + + L P+ NW A V R +G P L+ ++Y Sbjct: 178 HG-REP--VDSAALLARLPLLHLRPEARA--NWFAWDGVFRALGIAEPPSAGALRFDNYT 232 Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++Q + G G+A+ Y+V + LVR+++ I ++ Y PE + ++ F Sbjct: 233 LLIQAAIAGQGVAIGWRYLVDELLAQGLLVRMLDTSIRSAYGYYVVMPERKRRARLVRCF 292 Query: 287 RNFI 290 +++ Sbjct: 293 VDWL 296 >gi|62178948|ref|YP_215365.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615496|ref|YP_001589461.1| hypothetical protein SPAB_03267 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168240136|ref|ZP_02665068.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261251|ref|ZP_02683224.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194448484|ref|YP_002044363.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|224582172|ref|YP_002635970.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126581|gb|AAX64284.1| putative transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364860|gb|ABX68628.1| hypothetical protein SPAB_03267 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406788|gb|ACF67007.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340316|gb|EDZ27080.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350095|gb|EDZ36726.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466699|gb|ACN44529.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713403|gb|EFZ04974.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 321 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR+G F AA +L LS S IS++I+ LE + +LF+R+ R + LT +G Sbjct: 21 EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +++ L +G + I + G + L F++ YPDI ++ Sbjct: 81 ALCGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D IR+ I + I R+L T A+P YL+ +P S+ Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 L +H+ + +I + F NW+ T + R++ NS ++ + + G GI L Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255 Query: 244 LPDYIVK---DNPNLVRIM 259 ++ V + LVR++ Sbjct: 256 RSEWDVAQYIERGELVRVL 274 >gi|167561666|ref|ZP_02354582.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] gi|167568903|ref|ZP_02361777.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 308 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 67/294 (22%), Positives = 139/294 (47%), Gaps = 18/294 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L F +VAR GS + AA L ++ + +++++ LE +G +L R R +LT +G Sbjct: 7 DDLTFFVLVARHGSLSAAARVLDVTPPAATKRLALLENRLGARLVNRTTRSFSLTSEGET 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R + + + + ++ S P G LR+ T+ G+ + + EF L+P +++Q Sbjct: 67 YLRYATRIVADIRQMEDAVRASRSVPRGLLRVNATLGFGRTAIAPLVSEFAKLHPQVEVQ 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ D AIR +P + R++++ A+P YL+ P S+ + Sbjct: 127 LDVTDRPVDLVEGGYDLAIRFGEP-PDKRINARRIMSNRRFLCASPAYLQRHGAPASLAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L H I + + +D + V R + + I ++V LS ++ + + G Sbjct: 186 LAAHRCI-----VHRQNDDAH---GVWRFVRDGEIEVVKVRGALSSNDGDIVLGWALDGH 237 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + ++ + ++ L ++ + PS ++ YP + + +A +F+ Sbjct: 238 GILIRSEWDLAKYLESGRLRLVLPEYALPSADLFVYYPSRQNQSARARALIDFL 291 >gi|158421870|ref|YP_001523162.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158328759|dbj|BAF86244.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 343 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/290 (22%), Positives = 128/290 (44%), Gaps = 15/290 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R+ VA + S AA Q+ ++ S++ R++ +E +G+ LF RH G LT G Sbjct: 31 WDDFRLIKAVADARSLPAAAVQMGVNHSTVFRRLKQIEEALGVALFVRHRTGYALTPAGE 90 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + V + + ++ + P+G+LR+ T L +LL L F P +++ Sbjct: 91 EVVALAERVDADITSVTRKIAGRELAPAGELRVTTNDSLLVHLLMPMLARFREACPSVRL 150 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L N+ +++S AD AIR +L+ R++ I Y + +I Sbjct: 151 DVVLGNQALNLSKRDADVAIRASD-TPPDNLVGRRVARIGWALYGLARRFPSAD---AIA 206 Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240 ++D + ++ GD F + V + P +VN+ + + G G Sbjct: 207 QMDPAAEDWVSLGD-------GFGGMKVVKDTLARIPPERIAYRVNTVFGLAEAIEAGLG 259 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I P +I P LVR+ + ++ L++ +++ F +F+ Sbjct: 260 IGYAPCFIADPRPALVRLAPPEPAYAADLWLLTHPDLRHAARVRVFLDFM 309 >gi|283785539|ref|YP_003365404.1| LysR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282948993|emb|CBG88596.1| LysR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 305 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 141/300 (47%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F +VAR F A+++ +S + +S++I+ LE + + L +R R +++TE+G + Sbjct: 8 NDLRIFMLVARRAGFAAVAQEMGVSPAFVSKRIALLEQSLNVTLLHRTTRRVSITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ EL + P G LRI ++ G+ ++ L YP ++++ Sbjct: 68 IYAWAQRILCDVDQMLDELSAARQVPQGMLRIISSFGFGRRVVAPALSALAKQYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D++ + D IR+ I + +LI RKL T + A+P +L P + E Sbjct: 128 FDVADRLVDLANEGVDLDIRIGDDI-APNLIARKLGTNYRILCASPAFLARYGTPKQLNE 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L + + + D P G ++ ++V LS + Q Sbjct: 187 LSAYPCLVIKER--------------DHPFGVWQLQSKEGQHAIKVTGALSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V DN +LV ++ + P+ ++ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVCDNIASGHLVHLLPEYYQPA-NIWAVYVSRLAASAKVRITVEFL 291 >gi|317054286|ref|YP_004118311.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316952281|gb|ADU71755.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 306 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF GS AA +L+LS R ++ LE + ++L R L LT+ G Sbjct: 7 MSVFVAAVEEGSIAAAARRLNLSPVMAGRYLTSLEEGLSVRLLERSTHQLNLTDAGGSYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + E + P G LRIA + G L + F+ YP + IQL Sbjct: 67 VKAKRILSDIREAEQEATAKHISPQGSLRIAAPVTFGTQYLAPLIAAFMRDYPQVDIQLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ + D AIR+ + + S L+ R++ + A A+P YL + PL +EL Sbjct: 127 LLDRFIDLVDEGVDLAIRIGQ-LPDSDLVARRITDYRLLACASPRYLADAGRPLLPEELA 185 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 +H LI + M W + + C + + +IM L +GI P Sbjct: 186 RHVLIGYSG----TMTTSPWQFTAASGEVKQIEAHCRFLANNTAIMVALALQDAGIVYGP 241 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++++ LV ++ D P +++ A K + F ++ Sbjct: 242 EFVMQPHLQTGELVEVLPDYRCPVISLFAVTLNAKYVNSKTRLFIQYL 289 >gi|209517867|ref|ZP_03266701.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209501700|gb|EEA01722.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 330 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 15/289 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F A GS AA +S + S + LE ++G++LF+R R L++TE+G +L Sbjct: 9 IFVRAATLGSLRSAAVDQGISPQAASHAVMQLEKDLGVRLFHRTTRKLSVTEEGQRLLDS 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 L + E + S + G LR++ LG +L +EF LYP++Q ++ LD Sbjct: 69 VKPALATLSSALDEARRSKEEVGGVLRVSAARALGLPVLWPYFEEFQKLYPNVQFEVQLD 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D+ D +D R P S I R+LV I + A+P Y++ P +I+EL +H Sbjct: 129 DQFTDLVTDRSDVGFRGGPPPSGGS-IARRLVPIQLIVCASPEYIERNGAPRTIEELAQH 187 Query: 190 NLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + G L + + D P + L VN Q + G GI L Sbjct: 188 RCTGYRRANTGKLAQWQFRIGDEVVYRDVP------AALCVNDTEMETQAVLSGLGIGQL 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + L+ ++ +T +Y Y + + ++K F +F+ Sbjct: 242 GSFNATPHIRSGRLIPLLTRHVTEHGMIYIYYGHRTEQSLRVKTFIDFM 290 >gi|153839452|ref|ZP_01992119.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|149747041|gb|EDM58029.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] Length = 307 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 94/189 (49%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 65 FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ A+P Y+ E S + Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGANERILCASPEYVATHPELTSPAD 184 Query: 186 LDKHNLITF 194 L +HN + + Sbjct: 185 LTQHNCLCY 193 >gi|49085008|gb|AAT51245.1| PA3895 [synthetic construct] Length = 318 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT A++QL+ + + +SR ++ LET + +L R R + LTE G + Sbjct: 6 NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+GKL++ + +GQ+ + + + Y D+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D AI + + S I +++ + A+P YL+ P EL Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H+ + L+ + WL D P G+ +S QVN ++ + G GI Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y ++ LVR++ VY YP K+K + ++ Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYL 291 >gi|71734912|ref|YP_276123.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555465|gb|AAZ34676.1| probable transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320327185|gb|EFW83199.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330880809|gb|EGH14958.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 328 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 15/244 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V SGSF+ A L LS S++SRQI LE + + L R R L +TE G + V Sbjct: 16 VFRQVVVSGSFSGAGRTLGLSPSAVSRQIDRLERILNVALVTRSTRNLFITESGQDVFNV 75 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 SE+ ++ ++ + V+P G LR+ + +G+ LL ++ EFL +YP I++ L Sbjct: 76 ASEIASATDSLMGRIEAAMVEPEGLLRVTAPVTIGKILLSSSIAEFLRVYPKIKVDLNFT 135 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI + D ++R+ ++ RKL + A + + P +++ Sbjct: 136 DNIVDIYKEKFDLSVRITS-TPPHDMVARKLFDVEYLLVATTGEV-SFEIPSHPEDISST 193 Query: 190 NLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +IT FG+ + D+++ PR L N+ +++ G+G+ +L Sbjct: 194 PMITPSDSFFGEEMTFNHTDYSYTVR-----STPR---LMANNSETLLGAIFSGTGVGVL 245 Query: 245 PDYI 248 P+++ Sbjct: 246 PNFL 249 >gi|330821561|ref|YP_004350423.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] gi|327373556|gb|AEA64911.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3] Length = 306 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 11/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V +G+F AAE + ++ +SR I+ LE + I+LF R R ++LT++G + + Sbjct: 14 VFAAVVDTGTFAAAAEVIGMTPPGVSRAIARLEKRLKIRLFNRTTRSVSLTDEGRRFYEQ 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 LE + G+LR+ +L L+ F+ +P + +++I Sbjct: 74 VMPHLAGLEEAAAAASGDAAVVRGRLRVNLDPVCYGLVLGAPLERFMAAHPGLDVEVIAR 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--D 187 + D+ ++ D AI+ +P ++S+L+ RKL + AAP YL PL ++L + Sbjct: 134 DTVGDLVLEGFDLAIQFGEP-KASTLVARKLFDTGVVTVAAPAYLARHGRPLRPEDLAGE 192 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H +I F + P+ + W R + E R L VN + ++ CV G G+A + Sbjct: 193 GHRVIEFRN--PETGRPYRWEFRRKRRHLVVEAR-GRLTVNDPAAHVRACVAGLGVAQML 249 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+ LV + D F +Y YP + +AF +F+ Sbjct: 250 AFAVEPMIAAGQLVNLFPDWADERFPLYAYYPSRQHLPARTRAFLDFV 297 >gi|171316746|ref|ZP_02905958.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171098096|gb|EDT42911.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 309 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 10/287 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R+F VA GSF AA L + ++++S + LET +G +L +R R + LT G+ Sbjct: 5 DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + G+L + + + ++ L YP +Q+ Sbjct: 65 LLERGRRLLAEADELDRLFRRRDRDVMGRLNVDAPSRIARRVIAPALPLLFRRYPKLQLS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DCAIR+ + + SSL+ R L + A+P YL+ C P Sbjct: 125 LGSTDRTIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLRECGVPEHPDA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H G P + W D + P S + VN+ + + C+ G G+ Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCADGGQHTLALP--SRVIVNNAETYIASCIAGMGLI 240 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P + V D+ LV +M V YP + +L AF Sbjct: 241 QIPRFDVVHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAF 287 >gi|172062227|ref|YP_001809878.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994744|gb|ACB65662.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 302 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 19/254 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V GS T A L + S +SR I+ LET +G++L R R L+LTEQG Sbjct: 11 VEAFVTVIEKGSMTAGAVALGSTPSVLSRAITRLETRLGVQLLRRSTRRLSLTEQGRLYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + +Q +G +R++ G L L++F +P+++++L Sbjct: 71 EQSRAAFLLIDDAERAIQGHGGTLTGHVRLSVPTTYGHYRLPPLLRQFTQQHPEVRVELN 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D+ + D AIRL + + S L+ RKL + AAP Y+ P ++ +L Sbjct: 131 IANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVAAPEYVARAGMPENVADLA 189 Query: 188 KHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H + F G + P +D +WL P + + L ++ G Sbjct: 190 HHLCLPFMLPSSGRIAPWVFRDDGQDIDWL---------PPSNVAVSDDVLGVVSMAQSG 240 Query: 239 SGIALLPDYIVKDN 252 +GI D+IV+D Sbjct: 241 AGICQTYDFIVQDR 254 >gi|254228071|ref|ZP_04921501.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|262395951|ref|YP_003287804.1| transcriptional regulator LysR family [Vibrio sp. Ex25] gi|151939567|gb|EDN58395.1| LysR substrate binding domain protein [Vibrio sp. Ex25] gi|262339545|gb|ACY53339.1| transcriptional regulator LysR family [Vibrio sp. Ex25] Length = 293 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F V + GSFT AA L L ++++SR+I LE +G +LF+R R L+LT +G Sbjct: 4 DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V L++ + S++ GK+++ + + LQ L EF YP +++ Sbjct: 64 YYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEP-LQPILFEFQDQYPQVELD 122 Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++N ID+ D A+ + S ++ RK++T+ A+P+YL+ P +++ Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL H I F P D W +P++ N+ I VL GI+ + Sbjct: 182 ELSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 P +VK ++ LV+++ T + YP+ Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPK 270 >gi|257487935|ref|ZP_05641976.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008625|gb|EGH88681.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 303 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF VAR SF AA +L +S + +S+++ LE + + L +R R +++TE G + Sbjct: 7 DDLNVFVHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSITEDGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ E+ +PSG LR+ ++ G+ + L E LYP + I+ Sbjct: 67 VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + L R L + A+P YLK+ PLSI E Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H+ + +I + F + ++ P G + L N Q+C+ G G+ Sbjct: 186 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290 L + V+ + R+++ + P + ++ + L ++ K++ F+ Sbjct: 241 LRSLWDVRTDLAEGRLVQ--MLPEYRQDADIWAVHTSPLMSSAKVRVTVEFL 290 >gi|241203241|ref|YP_002974337.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857131|gb|ACS54798.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 283 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 17/246 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W L++F +AR G+ AA +L L+Q ++ R++ LE +G LF R G LT++ Sbjct: 1 MEWSDLKLFLAIARFGTLGAAARRLGLTQPTMGRRLRALEASLGQTLFQRTTDGFVLTDE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ + + + + L S + G LR++++ G ++L L EF ++P + Sbjct: 61 GAAVFAGAERIEEEALAMERSLAGGSRQLDGLLRLSSSDWFGAHVLSPVLAEFSQVHPKV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY---AAPHYLKNCRE 179 ++L+ D++ + +S AD R+ +P + ++ RKL+ I Y APH Sbjct: 121 VVELLTDSRLLSLSRREADLVFRI-QPFTEAEIVSRKLIRIEYGLYISRGAPHPEAGDGA 179 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +D+ FG+ M D WL R + + I + NS C G+ Sbjct: 180 GARLVTMDE----AFGE-----MPDVGWL---RRLLPQADI-VTRSNSRDVQAALCANGA 226 Query: 240 GIALLP 245 G+A+LP Sbjct: 227 GLAVLP 232 >gi|254246798|ref|ZP_04940119.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124871574|gb|EAY63290.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 327 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 8/249 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + + + L +F +G + AA +L L +S++S++++ LE +G +L +R +R LT Sbjct: 21 LKVNLNDLYLFVQAVEAGGMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 80 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G++ + + + + + +P+G +RI +++ + Q++L L + +P Sbjct: 81 PVGAEFFEHARAAVIEADCARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPVLAIAHP 140 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 + +Q+ ++ +DI+ + D A+R P+ S+L+QR L + AAP YL Sbjct: 141 KLLLQIHASDRLVDITQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 200 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P + +L +H+ + G P+ VD PR+ LQ + ++Q G Sbjct: 201 PDTPADLAQHDGLHPG---PQPWRLQRAGDAVDV---TPRLR-LQADESTLLLQAATAGL 253 Query: 240 GIALLPDYI 248 G+A LPD+I Sbjct: 254 GLACLPDWI 262 >gi|194365944|ref|YP_002028554.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348748|gb|ACF51871.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 297 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 22/297 (7%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +R F + SFT A+E L L +++++ I LE +G++L +R R + T +G Sbjct: 4 FTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALENRLGVRLLHRTTRLVVPTLEGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + ++ V P G LRI LG++LL +L +FL YP+I++ Sbjct: 64 AFYGRCLRLIADMDDAEAAFRD--VPPRGPLRIEVHGTLGRHLLFPHLPDFLQRYPEIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ ++ +D+ + D A+R+ + S L R+L + A+P Y++ P SI Sbjct: 122 EVNEGDRYVDLLREGVDAAMRVGT-LADSDLAARRLTMLREVTVASPSYVQARGVPGSID 180 Query: 185 EL-DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 L D H ++ + G LIP + + V P + ++V+ + + + G Sbjct: 181 ALQDGHQMVGYRSSATGQLIPLEFQQTGQIRYVPLP------ARVRVSGADAFLGAALAG 234 Query: 239 SGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI P Y + NP LV ++ D + YP + +L+ F +++ Sbjct: 235 LGIIQAPRY--RMNPYIARGQLVELLPDAPPTPSPLSLVYPRNRTPSPRLRVFIDWV 289 >gi|17989410|ref|NP_542043.1| LysR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|225628646|ref|ZP_03786680.1| LysR family transcriptional regulator [Brucella ceti str. Cudo] gi|260564324|ref|ZP_05834809.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|260568495|ref|ZP_05838964.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|17985286|gb|AAL54307.1| transcriptional regulatory protein, lysr family [Brucella melitensis bv. 1 str. 16M] gi|225616492|gb|EEH13540.1| LysR family transcriptional regulator [Brucella ceti str. Cudo] gi|260151967|gb|EEW87060.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|260155160|gb|EEW90241.1| transcriptional regulator [Brucella suis bv. 4 str. 40] Length = 325 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 27 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 86 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 87 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + AAP YLK P +I++L Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 205 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ NS + + + G GIA + Sbjct: 206 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306 >gi|78045600|ref|YP_361775.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926178|ref|ZP_08187536.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|78034030|emb|CAJ21675.1| transcriptional regulator, LysR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543360|gb|EGD14785.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 295 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 14/248 (5%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D + L F +VA + A+ S++++SR+I+ LE ++G++L R ARGL LTE Sbjct: 4 SMDLNALIDFSLVAANQGLGKASRASGRSKATLSRRITELEEQLGVRLVERSARGLKLTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLYP 120 G +L T ++ +E P G+LR+A+ + Q L G++ +F YP Sbjct: 64 AGQQLMERTQVPLSEVAEAMTAAREGLSSPRGRLRVASPVLFSQ-LAMGHIGADFCAAYP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I ++++ +++ +D+ + D AIR+ P S L+ R + AAP Sbjct: 123 EITLEVVAEDRTVDLMEEQFDVAIRI-NPSPDSRLVGRCFAKDRLVVVAAP--------- 172 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 SI + ++ E W R + EP I ++ +S+L + + G G Sbjct: 173 -SIAMPSGDAVHPVPGVVMSSFEPTTWTLDGGRLVLEP-IPRMRFSSFLMVRDAVIAGGG 230 Query: 241 IALLPDYI 248 +AL+P I Sbjct: 231 VALIPQSI 238 >gi|94314585|ref|YP_587794.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358437|gb|ABF12525.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 306 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 16/283 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V GS + A L ++Q ++ R I LE+ +G+KLF R G TE Sbjct: 11 WEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSFDGFAPTEAAH 70 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + + + G +R+ + +G +L L +P++ + Sbjct: 71 ELKPYAASIAATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAALRDAHPELVV 130 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L N+ D+ AD AIR+ +P+Q +LI R + I + +A YL+ P S Sbjct: 131 ELVLSNQPDDLLRREADIAIRMFRPVQ-GALIARHVGGIEIGLHAHSRYLQAHGVPGSTS 189 Query: 185 ELDKHNLITF---GDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 EL +H LI F D I + F W ++ + +S L+ + G Sbjct: 190 ELSRHALIGFDQENDFIRRLQSKFKPFWRDSL----------AFRSDSDLAQLGAIRAGF 239 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282 GI + + +P LVR++ + + + + E L++ + Sbjct: 240 GIGVCQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTR 282 >gi|170701828|ref|ZP_02892759.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133245|gb|EDT01642.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 297 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 5/271 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR SFT AA +L +SQS++S+ + LET +G++L R R ++ TE G + Sbjct: 7 NDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAGEE 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + ++E + + KP+G +RI T ++ L+ L YPDI+++ Sbjct: 67 LFQAVAPRIDEIEMKLAAVSDFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIRVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D +I + D +R + + R I M A+P YL + P + Q+ Sbjct: 127 LSVDYGLSNIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L H+ +T K + + W R + R++ + N+ ++Q + G GIA + Sbjct: 187 LLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVNGRITCNTQPHMVQAALDGFGIAFV 244 Query: 245 PDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273 + IV D+ +RI+ P F Y Y Sbjct: 245 TEDIVLDHVRSGQLRIVMPDWCPVFPGYHAY 275 >gi|149911851|ref|ZP_01900452.1| putative transcriptional regulatory protein (LysR family) [Moritella sp. PE36] gi|149805056|gb|EDM65081.1| putative transcriptional regulatory protein (LysR family) [Moritella sp. PE36] Length = 301 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 136/304 (44%), Gaps = 21/304 (6%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR F V GSF+ AAE + SS+SR+++ LE +G L R R ++LTE Sbjct: 2 DQLRAIKYFVKVVEHGSFSKAAELFSVPPSSLSRRVADLEKSLGATLLKRTTRTVSLTEI 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ SEV L + ++ P G L I+ + G+ +L L EF LYP I Sbjct: 62 GQIYYQQVSEVLSLLAYSDETVRNYQATPMGVLNISAMVGFGERILLPLLDEFRELYPQI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + L + + D D AIR ++ KL+ + AAP YLK P++ Sbjct: 122 TLNVSLSDDLSTLGRDEVDLAIR-GGYAPDERVLAIKLMENNFIVVAAPRYLKTHGVPVN 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239 EL +H + F P W+ +D + +S QV N+ +++ V G Sbjct: 181 AMELKQHKGLYFK--TPSG--PTPWICEIDNQRQD--VSAEQVLISNNGKWLVEKAVAGL 234 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPS--------FTVYFCYPEALKNTGKLKAFRNFIF 291 GI ++P + ++ + E ITPS ++ Y + K+KA +F+ Sbjct: 235 GILMMPRWALEPYIESGELTELTITPSIDITRKANLGIFLLYQKQRYQVPKIKAAVDFLV 294 Query: 292 LKAR 295 + + Sbjct: 295 ERVK 298 >gi|116691527|ref|YP_837060.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736470|ref|YP_001777730.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|116649527|gb|ABK10167.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gi|169818658|gb|ACA93240.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 309 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 9/269 (3%) Query: 26 QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85 QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ +++ Sbjct: 25 QLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQMR 84 Query: 86 ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145 E P+G+LRI + L F YP IQ+ +I++++ +D + D A + Sbjct: 85 ELRATPTGRLRIQMLPGFALDHFGAPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDIAFQ 144 Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205 + PI S SLI+R+L T+ AAP Y+ P ++L +H + + Sbjct: 145 IFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN---- 199 Query: 206 NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261 W T + E + ++ NS + +Y + G G+ LP + D LV I+ D Sbjct: 200 RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILTD 259 Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + YP + K++A F+ Sbjct: 260 YQLAPLSFAAVYPATQRQALKVRALVEFL 288 >gi|330891141|gb|EGH23802.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 303 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF VAR SF AA +L +S + +S+++ LE + + L +R R +++TE G + Sbjct: 7 DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSITEDGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ E+ +PSG LR+ ++ G+ + L E LYP + I+ Sbjct: 67 VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + L R L + A+P YLK+ PLSI E Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H+ + +I + F + ++ P G + L N Q+C+ G G+ Sbjct: 186 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290 L + V+ + R+++ + P + ++ + L ++ K++ F+ Sbjct: 241 LRSLWDVRTDLAEGRLVQ--MLPEYRQDADIWAVHTSPLMSSAKVRVTVEFL 290 >gi|332717296|ref|YP_004444762.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] gi|325063981|gb|ADY67671.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 298 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 131/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A GSF AA +L +S S+I + ++ LE + ++LF+R R LTLT +G+ Sbjct: 7 LNAFVQTADCGSFAGAAARLGVSGSAIGKAVARLEERLAVRLFHRSTRSLTLTAEGALFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++E ++EL + P G+LR+ ++ L L+ + F+ YP+I++ L Sbjct: 67 DRCRRIFSEIEAAELELSQIRQAPRGRLRV--SLPLIGMLMMPAVMAFMRAYPEIELDLD 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D +R + + S L+ R+ +P YL P + +L Sbjct: 125 FTDRLVDVIDEGFDAVVRTGE-ARDSRLMMRRAGAFSHRIVGSPDYLAARGVPSTPDDLL 183 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIALLP 245 H P + W D E + V S L Q C+ G G+A LP Sbjct: 184 GHA--CHHHKYPSTGKLERWPMVADGAALELVLPVTSVASTLEP-QICLAEGGFGLACLP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +++ LV ++ED + + +P + K+ AF +F+ Sbjct: 241 QFAIREQLRRGRLVSVLEDYMQEVGAFHILWPANRHPSPKVSAFVSFM 288 >gi|298293997|ref|YP_003695936.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296930508|gb|ADH91317.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 307 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 131/282 (46%), Gaps = 8/282 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF VA +GS + AA +L +++S S ++ LE +G L +R R L+LTE G Sbjct: 4 DGIAVFVAVAEAGSISEAARRLRIAKSVASDRLVELERSLGATLVHRSTRKLSLTEDGVA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S +L+ +L E +G LR++ + + L L FL +P I++ Sbjct: 64 FLERASAALRELDAAAADLAERRGTLAGPLRLSAPVSFTRLHLGPALYPFLRAHPSIELT 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD++ ID + D IR P+ S L+ +L AAP YL P S+ Sbjct: 124 LDLDDRRIDAQAEGYDGVIR-HGPMHDSRLVAWRLARSRRLLVAAPDYLARHGSPDSLAA 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H I + + + D+ ++ R + L+VN+ + V G GIALLP Sbjct: 183 LNGHRGIFY---THRGIADWRFVMP-GRTVQVRAQVGLRVNNGEVMRDAAVAGLGIALLP 238 Query: 246 DYIVKD--NPNLVRIME-DVITPSFTVYFCYPEALKNTGKLK 284 ++ ++++E +T +Y +PE + + KL+ Sbjct: 239 MFLAGAAIRAGSLQVVEVGAVTEEEFIYIAHPEGRRPSAKLR 280 >gi|224457902|ref|ZP_03666375.1| transcription regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254371324|ref|ZP_04987326.1| transcriptional regulator [Francisella tularensis subsp. tularensis FSC033] gi|254875568|ref|ZP_05248278.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|151569564|gb|EDN35218.1| transcriptional regulator [Francisella tularensis subsp. tularensis FSC033] gi|254841567|gb|EET20003.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|282159944|gb|ADA79335.1| transcription regulator [Francisella tularensis subsp. tularensis NE061598] Length = 298 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 142/291 (48%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 12 FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 72 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + +++ RK+ + A+P Y+ P +I + Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--NIVARKIASTRYVLCASPAYINKNGSPSNISD 188 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242 L HN I + L + + P+ S + N+ + ++ CVL GIA Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVK+ N L+ +++D +Y YP+ K+K F N + Sbjct: 241 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291 >gi|87120076|ref|ZP_01075972.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] gi|86164778|gb|EAQ66047.1| transcriptional regulator, LysR family protein [Marinomonas sp. MED121] Length = 306 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 130/287 (45%), Gaps = 7/287 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D +++R+F VA+ SFT AAE L + +S++S ++S LE +GI+L R R + LTE G Sbjct: 11 DLNQIRIFTHVAQLASFTKAAEVLGIEKSTVSAKVSQLEASLGIRLLERTTRSVRLTEAG 70 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + L+ + S +PSG +R +L +L ++ FL YP + Sbjct: 71 RDYLAYCEQALNTLQQGDDYIHSLSGEPSGTIRFCAPHNLIDFILSSVIEPFLTCYPKVN 130 Query: 124 IQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ N D D AIR R I+ +SLI R L +P L P + Sbjct: 131 LEIHQVNGDEGFLSGNYDLAIRNHRGEIKDTSLICRPLFESQWVFVISPKQLDEFGYPET 190 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + L I + D + + + R + V++ +++ LG G Sbjct: 191 PEHLLSQPSIGLKNASTNKTYDPHLIWQDQKLNFRHRFA---VDNMRTVIASIKLGLGFG 247 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++P +VK+ LV I++D++ P ++Y YP + KL F Sbjct: 248 MVPKNMVKEELAQGELVEIIKDIVIPPTSLYLIYPSRVGQPAKLIKF 294 >gi|332992516|gb|AEF02571.1| LysR family transcriptional regulator [Alteromonas sp. SN2] Length = 310 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 25/265 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L V VA S T AA L + ++ S + +E+ +G LF R R L L+ G + Sbjct: 4 EDLIVILKVAEFRSITAAASSLDMRTATASAAVKRVESTLGSDLFIRTTRSLRLSAAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V + LE + LQE + G+LRI + DLG+N++ L F+ + I ++ Sbjct: 64 YLPVCEQAITMLEHAKQNLQEDTGNIEGELRIGLSSDLGRNVIAPWLNRFMDEHTGISMK 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +ID D D A+R P +SL K+ + A+P YLK P ++++ Sbjct: 124 LHLSDSNIDFYRDPVDIALRYGSP-NDASLYGFKICEVPRLLVASPAYLKQHGTPKTLED 182 Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG--- 240 L KHN + + D+I E L ++P+ N + ++CV G G Sbjct: 183 LPKHNGLFYQLHDIIYNEWE----LTRNNQPVKIKMQGNRAANDGDMVRRWCVNGHGLAV 238 Query: 241 ---------------IALLPDYIVK 250 +AL+PDYIVK Sbjct: 239 KSSLDMCDDLLNNRAVALMPDYIVK 263 >gi|221070133|ref|ZP_03546238.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220715156|gb|EED70524.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 309 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 126/288 (43%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA GS T AAE+L +S ++ SR + LE +G +L R R L LTE G Sbjct: 8 QIEFFVQVAELGSLTKAAEKLEMSNAAASRTLLALEERLGARLVERTTRRLWLTEVGQTF 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 +R S + ++ + E+ E++++P+G L + +++ + L EF YP + +Q+ Sbjct: 68 YRRCSAMLSEIAEAEAEVNEATLQPTGTLHVTSSVSFAMLHIAPALPEFQRRYPQLNVQI 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 N+ D D AIR R+ S++ RKL A+P YL P +L Sbjct: 128 TAANRYFDFIEAGIDVAIRTREYESDSNITVRKLARTWRVMAASPGYLAANGVPKHPDDL 187 Query: 187 DKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H ++ + P + D I S N I+ + G GI + P Sbjct: 188 KSHRMLIYNLAKDPTVLHLSQGQDHRDVEIS----SAFDSNEGQVIVSAGLAGLGIVIQP 243 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 YI+ D LV ++ D P T+ Y K++ F +++ Sbjct: 244 LYIIHDEIVAGRLVPVLLDWALPPLTINIAYQSRRHLPAKIRVFTDYL 291 >gi|76812008|ref|YP_333519.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|76581461|gb|ABA50936.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710b] Length = 773 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 4/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G+FT AA L L+ +++S I LE+E+ +KLF R RG++LTE G + + Sbjct: 478 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 537 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126 T++ Y ++ + L ++ +P G LRI + + L ++++ + L EF YP + +++ Sbjct: 538 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 596 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +DI + D IRL +QS + + + A P YL P + +L Sbjct: 597 RYEDHLVDIVKERLDAGIRLADRLQSGMVGVKIAPALTCALVATPGYLAQHGVPSKLADL 656 Query: 187 DKHNLITFGDLIPKCMEDFNW 207 +H I F PK W Sbjct: 657 ARHMCIRF--RFPKSGRLHKW 675 >gi|316936216|ref|YP_004111198.1| LysR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603930|gb|ADU46465.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris DX-1] Length = 304 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 13/251 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++R F +A GS + A L++ QS+++RQ+ LET +G L R R +TLT +GS+ Sbjct: 9 ERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELETAIGAPLLSRTTRRVTLTAEGSR 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ L+ E +S P+G +RI+ T G + F YP+I I Sbjct: 69 YYARCVQILRLLDQAGDEALGASGAPAGTIRISCTASFGVLHASRLMFAFQDRYPEIGID 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + D A+RL P+ SSL R L A+P YL P Q+ Sbjct: 129 FGLTDQRIDLVREGVDLALRL-APLTDSSLKLRPLGHSQRLLVASPDYLSVHGRPAVPQD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQVNSYLSIMQYCVLGSG 240 L H I ++ D L D+ P G L+V+ L+ + + G G Sbjct: 188 LSSHQGIR---MVNVAGSDMLMLQGPDQQTHRVPFG----GRLRVDHGLAAREAMIAGRG 240 Query: 241 IALLPDYIVKD 251 IA ++V D Sbjct: 241 IAAAHRWLVDD 251 >gi|115524094|ref|YP_781005.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115518041|gb|ABJ06025.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisA53] Length = 297 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 84/187 (44%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SFT AA +L LS S++S + LE +GI+L R R + TE G +L Sbjct: 10 LSAFVAVARERSFTRAAAKLGLSPSALSHTLRELEARLGIRLLTRTTRSVAPTEAGERLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E L E KP+G +RI + +L L L YPDI+++++ Sbjct: 70 ATVAPRLSEIEAELAGLSELREKPAGTIRITAGDHAAETVLWPALIGLLRDYPDIRVEIV 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 DN DI D +R + I + R + M +P Y P Q+L Sbjct: 130 ADNALTDIVTARFDAGVRFGEQIAKDMIALRIAPDMRMAVVGSPAYFAQRPRPKKPQDLT 189 Query: 188 KHNLITF 194 H+ I Sbjct: 190 AHSCINL 196 >gi|221368980|ref|YP_002520076.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] gi|221162032|gb|ACM03003.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] Length = 298 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 27/297 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+LR F A++GSFT AA+QL +S S+ ++ LE +G++L R R + LT G Sbjct: 5 DELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTPAGET 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + L+ E+ S +G +R++ + G++ + G L F L P + I Sbjct: 65 LLARAPALLDDLDDLLGEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALNPGLLID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L++ D++ + D A R+ + + SL RKL + A A+P Y+ P +++ Sbjct: 125 LRLNDSFADLASEGIDVAFRVGQS-EMLSLKTRKLGEVRTVAAASPGYIAARGAPGRLED 183 Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRI----SCLQVNSYLSIMQYC 235 L +H+ C+ D N W D G R QVNS + Sbjct: 184 LARHD----------CILDTNRRVPRRWTFLQD---GTERSVEIHGRFQVNSARAAADLA 230 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G GI P + + + + LV ++E+ V Y E K++A +F Sbjct: 231 MAGLGICYAPRFALAEALRSGRLVPVLEEFGGAVAPVSAVYLEGRSLPRKIRALIDF 287 >gi|118764448|emb|CAL80827.1| LysR:LysR substrate binding domain [[Polyangium] brachysporum] Length = 344 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V +GSF+ AA L L+ +++SR ++GLE E+G +L R R L LT G Sbjct: 7 LSVFTKVVDTGSFSRAASALGLTSAALSRTLAGLEAELGARLLQRTTRRLALTVAGEIYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + + +P GKLR+ + L F YP + +++ Sbjct: 67 DRARRILREVDEADAAVAAMAAEPRGKLRLVGPSAFLVYEVARRLPAFTERYPGVSLEVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +D+ Y D +I + K L R+LV H+ A+P YL+ +E Sbjct: 127 PRGYGLDVDSRY-DVSIEIAKEDSRLQDDLAVRQLVQTHLIPCASPSYLRRTGPVAHPRE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L + + + +P + + + + EPRI+ LQ S++ + G GIA LP Sbjct: 186 LLERDCLVAD--VPGVPQVWRFERDNEAIELEPRIA-LQARHGESLLAAALAGMGIASLP 242 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V+ LVR++ + T +T+Y P+ N G +AF +F+ Sbjct: 243 TFMVRHALQRGALVRLLPEWRTTPYTLYAAMPDHGPNPGSTQAFVHFL 290 >gi|121596281|ref|YP_988177.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120608361|gb|ABM44101.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 308 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 130/291 (44%), Gaps = 16/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VAR G + AAE LHL+QS++S+Q+ LE VG+ LF R + L+LT G + Sbjct: 13 LRAFCTVARFGGISRAAEALHLTQSAVSKQVQELERWVGVPLFERSRKRLSLTPAGERYE 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + S + +LE +EL S + G L ++ L L L + +P I + + Sbjct: 73 KAVSALLARLEAATLELITSGDE-GGALHLSVLPTLAAKWLIPRLPQLRAQHPQITLHFV 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186 D + DC+I + + +T + A P PL S Q++ Sbjct: 132 PYVHGYDFADPELDCSILFGDGHWPGA--RAHYLTGNDVALIGPRAGLAGAPPLHSPQDV 189 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H L+ +P + + V+ P+ P Q + + +I++ +G G+AL+ Sbjct: 190 ARHTLLRHVS-VPGAWQHWAEAHGVNGLDPLAGP-----QFDQFQTIIRAVSVGMGLALV 243 Query: 245 PDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIF 291 P +V+D + E + +T + CYPE+ L FR+++ Sbjct: 244 PRCLVQDEIAAGTVTEPLPGGGYTSDLGYWLCYPESRAQLVTLVRFRDWLL 294 >gi|313497082|gb|ADR58448.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 307 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 122/273 (44%), Gaps = 17/273 (6%) Query: 32 SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91 S +SR IS LE+ +G++L R R L+LT+ G + + ++ + + L + Sbjct: 35 SVVSRAISRLESHLGVQLLRRTTRRLSLTDSGLEYVEQARAAFQQIASAEQALSGHG-EV 93 Query: 92 SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151 G++R++ G + L L F L YP +Q++L + N+++D+ + D AIRL + Sbjct: 94 QGRVRLSAPTTYGHHRLPAMLAAFTLRYPKVQVELNITNRNVDLVAEGYDLAIRL-GDLP 152 Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211 SSL+ R+L + AAP YL P S+ EL HN + F ++P W Sbjct: 153 DSSLVARRLEEARLCLVAAPAYLARAGRPQSLAELAGHNCLPF--IMPSNGRPGVWQFRQ 210 Query: 212 DR------PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDV 262 P G P ++ + L + G GI ++IV + LVR++ED Sbjct: 211 GEEELLFVPQGNPVVA----DDVLGCISLAEQGVGICQTYEFIVAERLQRGRLVRLLEDY 266 Query: 263 ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 YP + +G +A + + R Sbjct: 267 EGARRPFSVIYPPHRQLSGASRALIDSLMTTGR 299 >gi|253686666|ref|YP_003015856.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753244|gb|ACT11320.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 30/260 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S S++S+ ++ LE E+ IKL R R + LTE G + Sbjct: 7 MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGKIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H+ +L + P G LRI ++ + QN+L L YP + + L+ Sbjct: 67 HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL ++L ++ M AA YL P D Sbjct: 127 TGIPAPDLIADGLDIVIRV-GALQDSSLFSKRLGSMPMVICAAKSYLAQHGTP------D 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQY 234 K P M +F+WL RP E P +V N +++++ Sbjct: 180 K----------PADMVNFSWLEYSVRPDSEFELIAPEGISTRVTPQGRFVTNDPQTLVRW 229 Query: 235 CVLGSGIALLPDYIVKDNPN 254 G+GIA +P V D N Sbjct: 230 LKAGAGIAYVPLMWVVDEIN 249 >gi|227326618|ref|ZP_03830642.1| putative DNA-binding transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 308 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 115/260 (44%), Gaps = 30/260 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S S++S+ ++ LE E+ IKL R R + LTE G + Sbjct: 1 MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H+ +L + P G LRI ++ + QN+L L YP + + L+ Sbjct: 61 HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL ++L ++ M AA YL P D Sbjct: 121 TGIPAPDLIADGLDIVIRV-GALQDSSLFSKRLGSMPMVVCAAKSYLAQHGTP------D 173 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQY 234 K P M +F+WL RP E P +V N +++++ Sbjct: 174 K----------PADMVNFSWLEYSVRPDSEFELIAPEGISTRVTPQGRFVTNDPQTLVRW 223 Query: 235 CVLGSGIALLPDYIVKDNPN 254 G+GIA +P + D N Sbjct: 224 LKAGAGIAYVPLMWIVDEIN 243 >gi|167907710|ref|ZP_02494915.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei NCTC 13177] Length = 315 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q ++ R ++ LE + + LF R + GL T+ Sbjct: 7 WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L R +E +E+T L ++ G +RI+ + +G +L + +P Sbjct: 67 AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+L L N+ D+ AD A+R+ +P Q + LI R + I + +A YL C P Sbjct: 123 ALTIELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARCGTP 181 Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 EL +H LI F I K F+ A L+ +S L+ + Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G+GI + K +P LVR++ ++ E L+ + + +A Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281 >gi|70729803|ref|YP_259542.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68344102|gb|AAY91708.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 297 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 120/250 (48%), Gaps = 10/250 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD LR F VA + + T A + L +S S++SR+I LE + LF + +G LTE Sbjct: 1 MNWDDLRFFIAVANASNITDAGQALKVSASTVSRKILVLEQALSSVLFLKTTQGYFLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + E+ +L + +L + +G +RI +G +L+ L +F L +P I Sbjct: 61 GQALLPMALEIEERLRLMERQLSRPGARMAGVVRIECPELMGSHLIIPALAQFRLQHPQI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + + ++ ++D +RL++P ++ + R++ + + +P Y P Sbjct: 121 SFDFVNAARSVKLTQSHSDLLLRLQRP-EAGNFTLRRVGELTQALFCSPGYAAAHGCPEK 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 EL +H+LI + + M WL + D+P+ ++ + + ++ G G Sbjct: 180 PSELRQHSLIGWNQTLAH-MPLARWLDQLSGDQPL------WMRTGNLEAQLKAVQAGLG 232 Query: 241 IALLPDYIVK 250 IA LP YI + Sbjct: 233 IAALPAYIAE 242 >gi|317053222|ref|YP_004118989.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316952961|gb|ADU72433.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 299 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 109/234 (46%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + GSF AAE++ +S ++R I+ LE ++ +L R R +LT GS+ Sbjct: 8 MRVFVAAVQMGSFVAAAEKMGMSPQMVARHIATLEKQLATRLLSRTTRKQSLTSTGSQYF 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + E ++ P+G +R+ + G+ L L +F+ YP I I+L Sbjct: 68 RRCLTILQAIDDAENEASGTAEVPAGTIRVNAPVTFGRYALVNFLTQFIEDYPHINIELT 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + I+ S+ D IR+ ++ L+ + LV + A+P YL +P EL Sbjct: 128 LADDVINASVAGFDAVIRIGDLDKNLRLVAKPLVAYRLIVCASPEYLIKNGKPQHPTELR 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 H I F A+ D S L VN + ++++ + G+G+ Sbjct: 188 HHQCIGFSPWQEAGSTHLWPFASQDGQSNIEVSSRLTVNDWGAMLEAALKGAGV 241 >gi|241663943|ref|YP_002982303.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gi|240865970|gb|ACS63631.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 302 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 37/309 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W+ F V +GSFT AAE L + +S+ S +S LE +G++L R R L LTE Sbjct: 1 MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAALGVRLMTRTTRQLRLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + ++ +L + +S +G LRIA ++G L + L YP + Sbjct: 61 GSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPHL 120 Query: 123 QIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 QIQ+ + + D ++ Y + + + + SSL+ R++V I YA+P L R PL Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPTLLAE-RPPL 179 Query: 182 SIQELDKHNLITFGDLIP-KCM---EDFNWLATVDRPIGEPRISCLQV---------NSY 228 T DL C+ +D +W RP+GEP ++V N+ Sbjct: 180 K----------TPADLAGWPCLSGPDDASW---AFRPVGEPTAEPIEVPIQPRLQTLNAE 226 Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + V G G+A + + LVR++ D + VY AL KL Sbjct: 227 MR-ARAAVRGLGVARMARSVGDTEVAAGRLVRVLPDFELTALRVY-----ALMPARKLVP 280 Query: 286 FRNFIFLKA 294 + +FL A Sbjct: 281 RKVRVFLDA 289 >gi|126730587|ref|ZP_01746397.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] gi|126708753|gb|EBA07809.1| transcriptional regulator, LysR family protein [Sagittula stellata E-37] Length = 298 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 82/308 (26%), Positives = 129/308 (41%), Gaps = 37/308 (12%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L+ F A++GSFT AA+QL +S S+ ++ LE +G++L R R + LT G Sbjct: 5 DQLKTFVATAKTGSFTAAADQLGVSNRLTSKYVAELENRLGVRLLQRTTRKVGLTPAGED 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + L+ E+ ++S +G +RI+ + G+ + G L F PD+ Sbjct: 65 LLARAPALLDDLDALLAEVSDTSRGFTGVVRISAPVTFGEVYVAGMLARFAARNPDLTFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D++ D D A R+ + SL RKL + A A P YL P + + Sbjct: 125 LRLHDGFVDLASDGIDLAFRVGQS-DMRSLKSRKLGEMRSVAAAGPAYLDGHGAPATPDD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---------------SCLQVNSYLS 230 L H C+ D N A PR QVNS + Sbjct: 184 LRHH----------ACILDTNRRA--------PRRWVFLKNGTEQAVDVQGRFQVNSARA 225 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + G GI P + V D LV +++D + + V Y E K++A Sbjct: 226 AAELAASGLGICYTPRFAVTDALATGRLVPVLKDYESTTIPVSAVYLEGRSLPRKIRALI 285 Query: 288 NFIFLKAR 295 +F +R Sbjct: 286 DFAVEDSR 293 >gi|309783451|ref|ZP_07678156.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308917782|gb|EFP63474.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 298 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 25/308 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D L +F + +G+ ++AA + +S+++IS +++ LE VG +L R R + LTE Sbjct: 1 MDAHSLVLFVDIVEAGNLSNAARNMKMSRANISYRLTQLEKSVGQQLMRRTTRRVELTEI 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L++ + +L Q + G +R++ G ++ G L EF YPDI Sbjct: 61 GQRLYQHGRVIRDELMAAQESVAVFGKTLQGSVRLSVPTGFGHMVMSGWLIEFKRQYPDI 120 Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQ---SSSLIQRKLVTIHMHAYAAPHYLKNCR 178 + L+ DN+ D+ D D A+R + +P Q ++ L Q + VT +Y+ H + Sbjct: 121 ALDLLFDNRVDDLLRDEVDVAVRVMSEPPQQTVATELAQVRYVTCASTSYSDTHSM---- 176 Query: 179 EPLSIQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 P+++++L + LIT DL +D + P L ++ + + Sbjct: 177 -PVTLEDLGRVPLITSAVAGRDLRVSAYQDEQRHELILHP-------TLASENFQFLREA 228 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR-----NF 289 + G G+ L+P+Y+V+ + R+ + +V+ L+ G+ + NF Sbjct: 229 ILAGLGVGLVPNYVVEQDLAEGRVSTTLNDWRLSVFGTRMFLLRMPGRYQTLATRTLINF 288 Query: 290 IFLKARDW 297 + KAR W Sbjct: 289 VVEKARAW 296 >gi|325524915|gb|EGD02852.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 306 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 141/293 (48%), Gaps = 13/293 (4%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR ++ R+ G+F+ A + L Q +IS+ ++ LE ++G++L R L T++ Sbjct: 2 DSLRSMHLFVRAVELGNFSAVAREEGLGQPTISKIVAALEKDLGVRLLERSTTSLAPTDE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + +++ + +P GKL + + LG+ L + EFL +YP+I Sbjct: 62 GRRFYERCKRLLDEYAGAVADVRGLTQRPVGKLVVNAPMGLGELRLNALMLEFLAVYPEI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L L ++ ID+ + D AIRL + ++ R + AAP YL + Sbjct: 122 EVELHLTDRVIDLIEEGVDVAIRLGH-VLPPDVVARSIAVSPRLLVAAPQYLSRAPKIRK 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L +H+ + + + ++ +R + P S +VNS L++ + + G+ + Sbjct: 181 PGDLARHDYVGYARA--GVGAELEFVRGTER-VAVPVRSRYRVNSSLALRECFLAGNAVG 237 Query: 243 LLPDYIVK---DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V+ D LVR++ D+ P T++ Y + +AF F+ Sbjct: 238 SGPAWLVQDLIDTGRLVRLLPKWDMALP-HTLHLVYASRRYLPLRTRAFLQFM 289 >gi|325276280|ref|ZP_08142069.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324098584|gb|EGB96641.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 300 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 129/297 (43%), Gaps = 24/297 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V +G F A QL + +S +SR+I+ LE +G +L R R L LT G Sbjct: 3 DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + E + S +P G+LR++ + L L + FL YP +Q Sbjct: 63 ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPQVISRFLEQYPLVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++L N+ +D+ + D A+R+R + +L+ R+L M AAP + + R+P Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIRDPAE 182 Query: 183 IQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 + L + L+ F L P + L EPR++ ++ ++ Sbjct: 183 LATLPVLGAAEADRLVHFRLLGPNGKQQDLAL--------EPRLA---IDDFVVRNAAVR 231 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G LP + + LVR++ + P + YP G L A R +I Sbjct: 232 AGLGFTALPSMFCEAELERGELVRLLPEWSLPGGYLQAVYPH---RRGLLPAVRVWI 285 >gi|262273887|ref|ZP_06051700.1| transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222302|gb|EEY73614.1| transcriptional regulator [Grimontia hollisae CIP 101886] Length = 292 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 28/301 (9%) Query: 3 FDWDKLRVFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW YV V GS AA +L+ S S++S++++ LE ++G++L R R LT+T+ Sbjct: 1 MDWITCAKSYVTVVEMGSLAQAATKLNTSSSALSKRLAWLENQLGVQLLKRTTRTLTMTD 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + E + + SG LR+ + G LL N+ EFL YP+ Sbjct: 61 AGRLFYQRGKLLLDDWTQLVSETTSTYGEVSGVLRVGAPLATGSRLLVNNIGEFLSTYPN 120 Query: 122 IQI--------QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173 IQ+ QL N D+ I+ + AD S+S I KL +A+P Y Sbjct: 121 IQVELHTLAPGQLPDPNLDVVITRELAD--------FNSASFIATKLFEFQPRFFASPAY 172 Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN-SYLSIM 232 L + ++L HN + +G +F + R + R+S V+ + +++ Sbjct: 173 LAQHPPIVEPEQLLHHNCLLYGSSSHPQEHEFE----LGRKL---RLSGNFVSPNPEALV 225 Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 V G GI L+ D V+ D LV ++ D+ P Y YP+ N K + F +F Sbjct: 226 NAAVAGLGIILVGDVTVRKELDQGLLVPVLPDLRQPKSAAYAYYPKLEYNHTKTRLFIDF 285 Query: 290 I 290 + Sbjct: 286 L 286 >gi|186474163|ref|YP_001861505.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196495|gb|ACC74459.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 307 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 12/287 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A +GSF+ AA +L L+ + +S+ ++ LET +G++LF+R R LT+T G +L Sbjct: 10 FIQTAETGSFSAAARRLGLTPAGVSKNVARLETHLGVRLFHRSTRKLTMTPGGEQLWADA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + L+ + KPSG L++ + G+ L L EFL YPDI DN Sbjct: 70 GAPFASLQDAFARAAQHDGKPSGVLKVGMALSFGREYLVPLLGEFLERYPDIVPDWHFDN 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ D AI + + ++ R++ A+P Y+K P EL + + Sbjct: 130 RAVDLIAGGFDAAIGAGIEL-TQGVVAREIARPCTIVAASPAYMKGRPLPAHPSELAELD 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL----SIMQYCVLGSGIALLPD 246 I + + T+ +GE ++ +V +I + G GIA LP Sbjct: 189 GIARRSSSTGRLRAW----TMRNQVGEEALAECRVRMIFDDPEAIAHAAMQGLGIAFLPT 244 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ L+R++ P + YP K + F +FI Sbjct: 245 PHAAPWIESGQLMRLLPGWHAPISPLTLYYPNRKLLPAKTRVFIDFI 291 >gi|171317421|ref|ZP_02906614.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171097438|gb|EDT42279.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 310 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 3/201 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A GSFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 13 IELFCLAAELGSFTLAATAATVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E P+G LRI+ G + L F YPD+ ++ Sbjct: 73 EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + + D AIR R P SSL+ RKL + A P YLK P ++ +L Sbjct: 133 LSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLKRAGVPRAVDDLH 191 Query: 188 KHNLITFGDLIPKCMEDFNWL 208 H I F +P WL Sbjct: 192 AHECIQFE--LPSSGRPIPWL 210 >gi|126726494|ref|ZP_01742335.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150] gi|126704357|gb|EBA03449.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150] Length = 304 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 16/249 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF AR GSFT AA++L++ Q SIS I LET + ++LFYR R ++LT G +L Sbjct: 14 LMVFEAAARLGSFTRAAQELNVQQPSISASIKQLETSLDVQLFYRSHRSISLTNAGERLF 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LE + +++S L ++ + + L EF +YP+I ++L Sbjct: 74 ADVTRAFELLEQSSTTIRQSVSNDHVTLSASSAFN--NYWMLPRLSEFQKIYPNIDLRLQ 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +++ D++++ AIRL + S LI +L+ + AAP + + +I Sbjct: 132 TSDREPDLTVEPISLAIRLGTGNWAGCDSHLIAEELI----YPVAAPRVMAAAIQLRNIT 187 Query: 185 ELDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L LI + I P + F ++P PR L++N Y ++Q + G G Sbjct: 188 GLLHQRLIHLEEPIRERPSWAQWFGAFGITEQP---PR-GGLRLNDYALVLQAAMAGEGF 243 Query: 242 ALLPDYIVK 250 A D++V+ Sbjct: 244 AFGWDHVVQ 252 >gi|71736168|ref|YP_274750.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556721|gb|AAZ35932.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320324536|gb|EFW80613.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328909|gb|EFW84908.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 303 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF VAR SF AA +L +S + +S+++ LE + + L +R R +++TE G + Sbjct: 7 DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSITEDGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ E+ +PSG LR+ ++ G+ + L E LYP + I+ Sbjct: 67 VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + L R L + A+P YLK+ PLSI E Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 L H+ + +I + F + ++ P G + L N Q+C+ G G+ Sbjct: 186 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 240 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290 L + V+ + R+++ + P + ++ + L ++ K++ F+ Sbjct: 241 LRSLWDVRTDLAEGRLVQ--MLPEYRQDADIWAVHTSPLMSSAKVRVTVEFL 290 >gi|270263853|ref|ZP_06192121.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042046|gb|EFA15142.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 308 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + GSF+ AAE+L L ++++S + LE +G++L R R + +T +G+ + Sbjct: 1 MRIFTRIVELGSFSRAAERLQLPRATVSNVLKRLEQRLGVRLLIRTTRQVQVTSEGTLYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ LE ++PSGK+RI L + ++ L +F YPDI + L Sbjct: 61 QRCVQLLGALEEADTLFSRHKLQPSGKVRIDMPHSLAREIVIPALDDFYRRYPDITLALG 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R + + SL+ R++ + A+P YL P SI +L Sbjct: 121 ANDTHVDLLREGVDCVLRAWE-TEDDSLVARRIAMLPQLTCASPGYLAAFGVPQSIDDLR 179 Query: 188 KHNLITF 194 +H + + Sbjct: 180 QHRAVGY 186 >gi|170726798|ref|YP_001760824.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812145|gb|ACA86729.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 300 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 136/278 (48%), Gaps = 17/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F V +G T AAEQL+L++S++S+++S +E ++ +KL R R +LTE G+ Sbjct: 5 ENMQIFIKVVETGGITKAAEQLNLAKSAVSKRLSEIEKQLSVKLINRTTRKSSLTEAGNA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPS--GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ + E + Q SSV+ S G L++A + G L L+ F +P +Q Sbjct: 65 YYQKCKLILE--EVDDLNCQISSVQQSLNGALKLAVPLSFGVVHLVKALELFAKQHPSLQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L ++ ID+ + D AIR+ + SS+ R + I A+P YL P + Sbjct: 123 MDLDFSDRYIDLVEEGFDLAIRI-GTLADSSMHARAIAPISHILCASPEYLALNGSPSTP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRIS-CLQVNS-YLSIMQYCVLGSG 240 ++L H+L+ + + +E L D + P S C+ N +L M V G G Sbjct: 182 EQLKSHSLLRYSRMPLAGIE----LTDKDNKKFTVPMESHCIANNGDFLKAM--AVSGHG 235 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 IA LP +IV N L +M++ Y YP+ Sbjct: 236 IAFLPRFIVWQELANGTLESVMQNYQLAQMKAYAVYPQ 273 >gi|184157737|ref|YP_001846076.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|332876420|ref|ZP_08444189.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] gi|183209331|gb|ACC56729.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|322508044|gb|ADX03498.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323517630|gb|ADX92011.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735430|gb|EGJ66488.1| LysR substrate binding domain protein [Acinetobacter baumannii 6014059] Length = 301 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 135/261 (51%), Gaps = 14/261 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A +++ S++S+ IS LE +G++L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + L+ + + + + P G++RI T+ + L + F YP+I+++ Sbjct: 71 YEQGIQILNDLDELEQSVTANHI-PKGRIRIHTSFSYWIHFLLPCISLFNQRYPEIELEA 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ D AIR P++SS+L+ R L + + +P Y++ P EL Sbjct: 130 HLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTYKQYVCSPLYIEKYGCPEHPDEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H L+ + ++ WL AT + + ++ L+VN +I+Q + G+GIA Sbjct: 189 HEHQLLD----VSYQRQNKTWLFKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQ 242 Query: 244 LPDYIVKD---NPNLVRIMED 261 L ++ +++ LV+I+ED Sbjct: 243 LNEFQIRNALQQKQLVKILED 263 >gi|170693395|ref|ZP_02884554.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170141550|gb|EDT09719.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 330 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A+ GS + A ++ L+ ++ S +++ LE + +LF R R L LT++G Sbjct: 7 IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + LQ GK+R++ T D G+NLL L EF LYP++ L Sbjct: 67 NCCRQALQSLDDAKAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AIR P Q SSL+ RKL A+P Y+ EP D Sbjct: 127 LSDSLSNLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYISRKGEP-----ED 180 Query: 188 KHNLITF 194 H+L F Sbjct: 181 PHDLANF 187 >gi|190895100|ref|YP_001985393.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT 652] gi|190700761|gb|ACE94843.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 324 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 18/297 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V GSF+ AA L +S +SR+++GLE +G++L R R L +TE G Sbjct: 6 DLNDLMLFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALHVTEVG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQ---ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L E+ Q L+ + PSG+L+++ I + L L +FL +P Sbjct: 66 QAL---LPHCESMAESAQAALEVAASAGEHPSGRLKVSCPIGVAHIYLAPVLGKFLKAHP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ +L L N+ +D+ + D A+R+R + S+L+ R L T A+P ++ Sbjct: 123 AVRFELDLTNRRVDVIAEGYDVALRIRSSLDDSNLVVRSLGTSEQMLVASPEFIATHGPF 182 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCV 236 S L + + P + ++ +P G + L + + Q + Sbjct: 183 GSADSLQRKPGVG-----PAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAAL 237 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A LP I D + LV+++ + V+ +P ++AF +F+ Sbjct: 238 AGIGVARLPVNICGDAIRDGRLVKVLPHYRLHAHGVHAVFPSRRGLVPAVRAFLDFL 294 >gi|163744756|ref|ZP_02152116.1| transcriptional regulator, LysR family protein [Oceanibulbus indolifex HEL-45] gi|161381574|gb|EDQ05983.1| transcriptional regulator, LysR family protein [Oceanibulbus indolifex HEL-45] Length = 295 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 131/290 (45%), Gaps = 12/290 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VA+ G+ + AAE L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 3 NWDEIRTAYQVAQMGTVSGAAEVLGVHHATVIRHIDALEGRLGVKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + ++ SG+L I T++D L L EF P++ Sbjct: 63 EDLLRVARATDDQFSQLAGRIKGRGSDVSGELVI-TSLDFLAPRLAPLLTEFQRQNPELV 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ ++ ++ + A A+R P Q +++Q + + AYA+ +Y+ P Sbjct: 122 VRYLIGDRLFRLEYGEAHVAVRAGAAPDQPDNVVQ-PYSQLSVGAYASRNYVAQYGIPQG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSG 240 ++ KH I + + WL A V P S +S + M+ + G+G Sbjct: 181 PEDYPKHRFIAADNRDSRAPY-HQWLWANV------PEESITWRSSSGAAMEAALRAGAG 233 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I LP + + +P LV I ++ L T K++A F+ Sbjct: 234 IGGLPAAMGRADPELVEIHAPRADWGSALWLVTHVDLHRTSKVQAVLRFL 283 >gi|327188505|gb|EGE55718.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 304 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 20/293 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 L F VAR +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+ Sbjct: 13 SALAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERTSRGVILTEAGTD 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 R + ++ + L + + + +L +A G L + EF+ +P+I + Sbjct: 73 YARAIAGALAEIRSA--SLHAMTKQHNDQLNLAILPTFGTRWLMPRIPEFVARHPEITLN 130 Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 D D D AI + +P +S+ L++ + + A+P +L N L Sbjct: 131 FATRIGLFDFDRDDIDMAIHIGQPDWPGAESTFLMEEMVAPV-----ASPSFL-NSHPVL 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L + L+ F L P ++ + S+ Q C+ G G+ Sbjct: 185 KAEDLLRLPLLQMASRPGAWSHFFESLQVSGAP-----SQAMRFEQFSSVAQACIAGLGL 239 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 AL+P +++ N LV+ + Y P + K+ + AFR ++ Sbjct: 240 ALMPLFLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVVAFRAWLL 292 >gi|242241334|ref|YP_002989515.1| LysR family transcriptional regulator [Dickeya dadantii Ech703] gi|242133391|gb|ACS87693.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703] Length = 295 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 138/289 (47%), Gaps = 14/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V GSF+ AA ++ + Q ++S+ + LE ++ L R RGLT TE G +L+ Sbjct: 7 LETFVCVYECGSFSAAARRMGIGQPAVSKAVMQLEQQLATSLLLRSTRGLTPTEAGQQLY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ Q + + + SG+LR++ + + + L +F+ L+P++++ ++ Sbjct: 67 DRIAPALTEIRDAQDSIVGGN-QLSGRLRVSAPVTFARLHIFPRLHQFMALHPELKVDML 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LD++ +D+ + D A+RL + S L R++ M A P + P + E++ Sbjct: 126 LDDRPVDLIAEGIDVALRLGD-LHDSGLTARRIAESPMKLLATPGWFAAHGVPTAPPEIE 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 + + I + L E NWL R + R++ ++ ++ + + + G+G+A+ Sbjct: 185 QQDAIVY--LQSSTPE--NWL--FSRGAQQCRVTLSGRIRTSAAEGMREAVLAGNGLAIA 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + +V ++D + ++ YP + + AF F+ Sbjct: 239 SAWMFAPELADGRVVTALDDWQIGTMALWAVYPGGRLTSARAWAFTEFV 287 >gi|92118745|ref|YP_578474.1| LysR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801639|gb|ABE64014.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis X14] Length = 303 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 7/292 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V +G F+ A +L++S + +S I LE +G++LF R R ++LTE G + Sbjct: 7 LTAFVRVVETGGFSAAGRRLNMSTTMVSNHIQALEDRLGVRLFNRTTRKVSLTEVGKTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +E KP G LRI + Q + L ++L YPD+ L Sbjct: 67 ERCVQILADIEQADDIAGALQTKPRGTLRIHCATHIVQ-FVAPILADYLKSYPDVTANLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ + D ++RL P SSLI R L T +P YL L + +L Sbjct: 126 IAEHAVDVIAEGFDLSVRLTPP-PDSSLIVRSLATWRHVLCCSPEYLTEHGPLLQLADLA 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN + L P D+++ T + + L NS ++ + G G+ L + Sbjct: 185 GHNCLRHA-LYPY-ENDWHFTDTTGKTVSVRVSGNLITNSGETLRAAALRGVGVFLAAGF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 +V D+ LV ++ D F + YP + K++ F + + + D Sbjct: 243 LVTDDLPSGRLVPLLPDYTPVEFAMNVVYPHRHHLSAKVRMFIDLLAQHSAD 294 >gi|319796581|ref|YP_004158221.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315599044|gb|ADU40110.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 309 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 14/249 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V R GSF A +L L +++SR+I LE ++G +L R R LTLT Sbjct: 2 LDLNHIAMFVQVVRHGSFAEAGRRLGLPPNTVSRRIQELEAQLGTRLMQRSTRKLTLTSA 61 Query: 63 GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G H R V +E Q L S +PSG +R+A T D + EFL P Sbjct: 62 GQAFHERCAGSVDGLVEAGQ-ALITGSQEPSGLVRVAATADFFDFFPMEWVAEFLAANPL 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREP 180 +++ +L + D+ D D A R + + + + RKL+ A+P Y+ P Sbjct: 121 VRVDFVLSDAKADLIADQIDVAFRGGE-LPDTGYVGRKLLGPRTDGLVASPAYIAARGAP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISC-LQVNSYLSIMQYCV 236 ++++L H+ +T + W T P G E ++S N+ ++ + V Sbjct: 180 ATLRDLTDHDCVTAAHPSGRA----TWRMT--GPDGVEEEVQVSGRFSGNTAQALRRAAV 233 Query: 237 LGSGIALLP 245 G GIALLP Sbjct: 234 AGLGIALLP 242 >gi|254474297|ref|ZP_05087687.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gi|211956671|gb|EEA91881.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 308 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 10/289 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S +WD L+ F VARSG+ A + ++ ++++R++ LE VG +LF R GL LTE Sbjct: 10 SLNWDDLKYFLAVARSGTIRGGATLIRVNHTTLARRLEVLEERVGSRLFDRSKAGLVLTE 69 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L V ++ T + KP G + + L + +L F YPD Sbjct: 70 LGEALLPYAERVEDEMATASRIIVGRDAKPQGTIHVTMPHGLAMTSIMDDLVLFAEKYPD 129 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + L N D++ AD R+ + + ++ RKLV + AY Y + ++ Sbjct: 130 IDLNLNFTNNVADLTRREADVGFRIADEV-TQDVVGRKLVQMSQAAYCTREYAERIKD-- 186 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + N I + + + W+ P + + +V+ + ++ G G+ Sbjct: 187 --NSGEGLNFIGWHEAEGETTAP--WILNGCYPKAKLK---HRVSELVPLISLAAAGLGM 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A L + +P L+R P +++ L+NT +++ F +F+ Sbjct: 240 AYLACNLGDRHPTLIRAPFQKPMPYRSIWLLLHRDLRNTARVRLFVDFV 288 >gi|162452439|ref|YP_001614806.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161163021|emb|CAN94326.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 317 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 19/283 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L +F + GS + A L L ++++SR ++ LE +G L R R L+LT+ G Sbjct: 25 DLSGLSMFVRIVEEGSLSAAGRALGLPKATLSRNLALLEKRLGAPLLIRSTRALSLTDTG 84 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + +++ PSG LRI + GQ + L F+ YP ++ Sbjct: 85 RRFFDKVQPIVREAQQATADVKILHAAPSGLLRITAPVAYGQAAIAPRLLSFMGRYPAVR 144 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L + +++ D AIR+ I+ S LI KL + M A+P +L+ P Sbjct: 145 IDLHLHDGRVNLVNGGYDLAIRM-GAIEDSELISHKLADVTMVIVASPTWLEQHGMPQRP 203 Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEP-RISC-LQVNSYLSIMQYCVLGSG 240 EL +H+ ++T D++ W R GE R+ + + + G G Sbjct: 204 AELAQHDAVVTRPDIV-------QW-----RVGGETVRVPWRMSTGNMIVTRDAARAGLG 251 Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280 IA +P+++V + LVR++ DV P Y A + Sbjct: 252 IAFVPEFLVLRDLERGTLVRLLPDVELPVIQATALYTRAASQS 294 >gi|71733708|ref|YP_273827.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554261|gb|AAZ33472.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 306 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 131/287 (45%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F+++A+ GS A +L ++ +IS+++S LE +G +L R R ++LT +G Sbjct: 7 LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGELYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ + + SS P G +R+ ++ G+ + L F YP++QIQL Sbjct: 67 SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+++ D IR + ++ RK+ + A+P YL+ P + EL Sbjct: 127 ISDHPLDLAIHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN I + P + F+ + C N + + + G GI L + Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + L ++ED VY YP+ L + +++ NF+ Sbjct: 243 WDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRYLINFL 289 >gi|15833197|ref|NP_311970.1| transcriptional activator TtdR [Escherichia coli O157:H7 str. Sakai] gi|168754028|ref|ZP_02779035.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4401] gi|168760219|ref|ZP_02785226.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4501] gi|168767081|ref|ZP_02792088.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4486] gi|168773285|ref|ZP_02798292.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4196] gi|168781934|ref|ZP_02806941.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4076] gi|168785932|ref|ZP_02810939.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC869] gi|168797649|ref|ZP_02822656.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC508] gi|195937204|ref|ZP_03082586.1| transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4024] gi|208808706|ref|ZP_03251043.1| transcriptional regulator, trunscation [Escherichia coli O157:H7 str. EC4206] gi|208814410|ref|ZP_03255739.1| transcriptional regulator, trunscation [Escherichia coli O157:H7 str. EC4045] gi|208821755|ref|ZP_03262075.1| transcriptional regulator, trunscation [Escherichia coli O157:H7 str. EC4042] gi|209395880|ref|YP_002272533.1| transcriptional regulator, trunscation [Escherichia coli O157:H7 str. EC4115] gi|217326801|ref|ZP_03442884.1| lysR substrate binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254795011|ref|YP_003079848.1| transcriptional activator TtdR [Escherichia coli O157:H7 str. TW14359] gi|261228072|ref|ZP_05942353.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261254928|ref|ZP_05947461.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|291284439|ref|YP_003501257.1| transcriptional activator TtdR [Escherichia coli O55:H7 str. CB9615] gi|118574169|sp|Q8XBK9|TTDR_ECO57 RecName: Full=HTH-type transcriptional activator ttdR gi|13363416|dbj|BAB37366.1| putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. Sakai] gi|187770892|gb|EDU34736.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4196] gi|189000617|gb|EDU69603.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4076] gi|189358470|gb|EDU76889.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4401] gi|189363827|gb|EDU82246.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4486] gi|189369350|gb|EDU87766.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC4501] gi|189373830|gb|EDU92246.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC869] gi|189379803|gb|EDU98219.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7 str. EC508] gi|208728507|gb|EDZ78108.1| transcriptional regulator, trunscation [Escherichia coli O157:H7 str. EC4206] gi|208735687|gb|EDZ84374.1| transcriptional regulator, trunscation [Escherichia coli O157:H7 str. EC4045] gi|208741878|gb|EDZ89560.1| transcriptional regulator, trunscation [Escherichia coli O157:H7 str. EC4042] gi|209157280|gb|ACI34713.1| transcriptional regulator, trunscation [Escherichia coli O157:H7 str. EC4115] gi|209759298|gb|ACI77961.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209759300|gb|ACI77962.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209759302|gb|ACI77963.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209759304|gb|ACI77964.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|209759306|gb|ACI77965.1| putative transcriptional regulator LYSR-type [Escherichia coli] gi|217319168|gb|EEC27593.1| lysR substrate binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254594411|gb|ACT73772.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|290764312|gb|ADD58273.1| transcriptional activator TtdR [Escherichia coli O55:H7 str. CB9615] gi|320189411|gb|EFW64070.1| Putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. EC1212] gi|320640133|gb|EFX09705.1| transcriptional activator TtdR [Escherichia coli O157:H7 str. G5101] gi|320645431|gb|EFX14440.1| transcriptional activator TtdR [Escherichia coli O157:H- str. 493-89] gi|320650742|gb|EFX19199.1| transcriptional activator TtdR [Escherichia coli O157:H- str. H 2687] gi|320661810|gb|EFX29218.1| transcriptional activator TtdR [Escherichia coli O55:H7 str. USDA 5905] gi|320666961|gb|EFX33937.1| transcriptional activator TtdR [Escherichia coli O157:H7 str. LSU-61] gi|326337763|gb|EGD61597.1| Putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. 1125] gi|326347328|gb|EGD71053.1| Putative transcriptional regulator LYSR-type [Escherichia coli O157:H7 str. 1044] Length = 310 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|307256719|ref|ZP_07538498.1| hypothetical protein appser10_7220 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864767|gb|EFM96671.1| hypothetical protein appser10_7220 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 298 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/288 (22%), Positives = 139/288 (48%), Gaps = 10/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+ +S + S+ I+ LE + ++L +R R +T TE G Sbjct: 5 NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++L+ + + + GK+ I+ +D G + L +F+ YP+IQ+ Sbjct: 65 YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D +R+ ++ SS++ +++ + A+P YL P ++++ Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GTLEDSSIVAKRIARSELVLIASPDYLAKQGTPENLEQ 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + + + + + ++ + +P + N Y +++Q G GI LP Sbjct: 184 LTEHTCLIYEN-----HQQWQFMNGEQKVKIKPNAHVISNNGY-ALLQMTKAGQGIVNLP 237 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++VK+ NLV I+ S + YP + K+K F F+ Sbjct: 238 LFLVKEEISAGNLVEILPQYKQHSIDISVLYPHRRYLSPKVKVFIEFL 285 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074243|gb|ADJ63642.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 127/290 (43%), Gaps = 12/290 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V GSF AAE L +S + +R I+ LE +G +L R R L+LTE G Sbjct: 6 SMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ + + + +P+G L I GQ+ L L + YP++ + + Sbjct: 66 LERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPEVALDI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + ID+ + D +S+I R+L + +P Y+ P ++L Sbjct: 126 SLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPEQPEDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +HN + F + N V D PI +S + NS + + + G GI L P Sbjct: 186 SRHNCLNFSHEYLRHHWHVNTNGGVLDVPI----VSKVVSNSGVLLRDLALAGMGIVLRP 241 Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 Y + D+ R+++ + P F + YP + K+++F FI Sbjct: 242 SYSLGDDLRSGRLVQ--VLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFI 289 >gi|227114039|ref|ZP_03827695.1| putative DNA-binding transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 305 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 30/260 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S S++S+ ++ LE E+ IKL R R + LTE G + Sbjct: 1 MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + H+ +L + P G LRI ++ + QN+L L YP + + L+ Sbjct: 61 HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL ++L ++ M AA YL P D Sbjct: 121 TGIPAPDLIADGLDIVIRV-GALQDSSLFSKRLGSMPMVVCAAKSYLVQHGTP------D 173 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQY 234 K P M +F+WL RP E P +V N +++++ Sbjct: 174 K----------PADMVNFSWLEYSVRPDSEFELIAPEGISTRVTPQGRFVTNDPQTLVRW 223 Query: 235 CVLGSGIALLPDYIVKDNPN 254 G+GIA +P V D N Sbjct: 224 LKTGAGIAYVPLMWVVDEIN 243 >gi|145298250|ref|YP_001141091.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142851022|gb|ABO89343.1| transcriptional regulator, LysR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 302 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 124/252 (49%), Gaps = 15/252 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD RVF +ARSG+ + AA L + +++SR++ LE+ +G+ LF RH G LT+ G Sbjct: 7 WDDARVFLAIARSGTLSGAALALDMGIATVSRRLDRLESALGLPLFSRHQHGYRLTDDGE 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + H E + + +G +R+AT +L L+ +L ++PD+++ Sbjct: 67 ALLARAEALEHAGHAFG-EAGQQQGQVAGCVRLATADNLANPLIIPSLARLFAIHPDLRV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+ + +++ AD A+R+ KP + I+R L T+ Y A Y+ + Sbjct: 126 ELVTGVQTVNLHRRDADLAVRMAKPDTGNVTIKR-LGTLGFGLYGASSYVDSRHPGTDAA 184 Query: 185 ELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 D+ I +G+ +P W+A + R G P C ++ N+ + + G G Sbjct: 185 SFDEDAFIGWGESHGHLPAA----KWIARMLR--GRP---CRVETNTLSAQLAAATAGLG 235 Query: 241 IALLPDYIVKDN 252 +A+LP Y+ K+ Sbjct: 236 LAVLPHYLAKET 247 >gi|172065646|ref|YP_001816358.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997888|gb|ACB68805.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 297 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 5/271 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR SFT AA +L +SQS++S+ + LET +G++L R R ++ TE G + Sbjct: 7 NDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAGEE 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + ++E + + KP+G +RI T ++ L+ L YPDI+++ Sbjct: 67 LFQAVAPRIDEIEMKLAAVADFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIRVE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +D +I + D +R + + R I M A+P YL + P + Q+ Sbjct: 127 LSVDYGLSNIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTPQD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L H+ +T K + + W R + R++ + N+ ++Q + G GIA + Sbjct: 187 LLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVNGRITCNTQPHMVQAALDGFGIAFV 244 Query: 245 PDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273 + IV D+ +RI+ P F Y Y Sbjct: 245 TEDIVLDHVRSGQLRIVMPDWCPVFPGYHAY 275 >gi|157372074|ref|YP_001480063.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323838|gb|ABV42935.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 302 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 13/296 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68 VF + GS AAE L +S++ ++R ++ +E G +L +R R L+LT+ G + L R Sbjct: 9 VFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLER 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + E +E E S + G LRI + LGQ L G + ++L +P + + L + Sbjct: 69 CRQMLALAGEIDLVE-GEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQM 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +N+ +++ + D A+R+ + +LI R L + AAP YL P Q+L Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLSSCASVVCAAPAYLAAHGTPRHPQDLAL 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + F+ V + L N + +M V G+G+++ P Y Sbjct: 187 HNCLTY-SYFGKSLWHFDHQG-VKSAVAVS--GNLSANESVVLMAGTVQGAGVSMQPYYS 242 Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298 + L+ +M D S +Y Y + L+ +F+ F W+ Sbjct: 243 AAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVEWFATDAGWR 298 >gi|56708693|ref|YP_170589.1| transcription regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110671165|ref|YP_667722.1| transcription regulator [Francisella tularensis subsp. tularensis FSC198] gi|56605185|emb|CAG46317.1| transcription regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110321498|emb|CAL09700.1| transcription regulator [Francisella tularensis subsp. tularensis FSC198] Length = 300 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 142/291 (48%), Gaps = 19/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 FY + GSFT+ A+ L +S++++S I LE E+ + L R R L+LT +G L Sbjct: 14 FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 73 Query: 68 RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++++ + +L ES K PSG L+I+T+ QN+L +KE+ + ++I++ Sbjct: 74 NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 132 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ K + + AD + + P + +++ RK+ + A+P Y+ P +I + Sbjct: 133 SIEEKMPNFKSNEADIILGVNWTPPE--NIVARKIASTRYVLCASPAYINKNGSPSNISD 190 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242 L HN I + L + + P+ S + N+ + ++ CVL GIA Sbjct: 191 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 242 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +YIVK+ N L+ +++D +Y YP+ K+K F N + Sbjct: 243 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 293 >gi|293449398|ref|ZP_06663819.1| HTH-type transcriptional activator ttdR [Escherichia coli B088] gi|291322488|gb|EFE61917.1| HTH-type transcriptional activator ttdR [Escherichia coli B088] Length = 300 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 1 MQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 61 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 121 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 180 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 236 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 237 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 282 >gi|260574837|ref|ZP_05842839.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2] gi|259022842|gb|EEW26136.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2] Length = 295 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 135/301 (44%), Gaps = 13/301 (4%) Query: 1 MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 MS + WD++R + VAR G+ + AAE L + +++ R I LE +G +LF RHARG T Sbjct: 1 MSIETWDEIRTAFQVARMGTVSGAAEVLGVHHATVIRHIDALEKRLGARLFQRHARGYTP 60 Query: 60 TEQGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 TE G L + T E +++L ++I+ Q +V SG+L + T+I LL L F Sbjct: 61 TEAGRDLLGVAQATEEQFNQL-ASRIKGQGETV--SGEL-VVTSISGIAGLLTPVLAGFQ 116 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 L+P + ++ + D + + A AIR + + + LV I YAA Y+ Sbjct: 117 ALHPGLTVRFLTDMRLFRLDYGEAHVAIRAGASPEEPDNVVQPLVRIRTGLYAARSYIAA 176 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P +L H+ I + + + WL P + + + Sbjct: 177 HGLPAGEADLAGHHFIAADNALSRAPFQ-RWLQDSV----PPEAITYRASEPAGLEAAVR 231 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+G+ + Y+ +P+LV ++ + ++ L T K+++F + A Sbjct: 232 AGAGLGFMSVYLAAGDPDLVEVLPPRPDWAGHLWIVTHVDLHRTLKVQSFLAHLKQAAAG 291 Query: 297 W 297 W Sbjct: 292 W 292 >gi|187923402|ref|YP_001895044.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714596|gb|ACD15820.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 329 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 75/313 (23%), Positives = 134/313 (42%), Gaps = 49/313 (15%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + + Q +L L EF+ YP+ Sbjct: 65 AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTVSQTILSQILPEFMHRYPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ +D+ D D A+R+R P ++++++ R L AP L+ P Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--------------------EPRI 220 L+P D N T+D P G EPR Sbjct: 185 ----------------LLPA---DLNGFETLDVPTGDGRHVYNLIAPDGTRHAHEHEPR- 224 Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEAL 277 L ++I + + G GIA LP+ + L +M P+ +Y + + Sbjct: 225 --LVTADLMTIREAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVF---V 279 Query: 278 KNTGKLKAFRNFI 290 G + A R F+ Sbjct: 280 SRQGMVPAVRAFV 292 >gi|170765782|ref|ZP_02900593.1| transcriptional regulator, trunscation [Escherichia albertii TW07627] gi|170124928|gb|EDS93859.1| transcriptional regulator, trunscation [Escherichia albertii TW07627] Length = 310 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + GSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHCGSFSAAAAALGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSYIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPLPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V+ + LVR++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVQPFLASGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|170735859|ref|YP_001777119.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818047|gb|ACA92629.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 319 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + + G TLT Sbjct: 11 NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + +++ ++ + SG +RI +T G L L F +P Sbjct: 71 AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ +++ AD AI L +P + ++ KL + YA YL N Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHAPI 189 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H I++ D + N L +DR + + L+ S ++ + + G G Sbjct: 190 TCTDDLARHAFISYVDDLAFS----NELLYLDRAV-PGATAGLRTTSVIAQVFAALQGGG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ P L ++ + + + + E L+ ++ A +++ Sbjct: 245 LAILPCFMAATQPALAPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYL 294 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151280909|gb|ABR89319.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 304 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 131/291 (45%), Gaps = 8/291 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F V+ + GS A +L ++ +++++++ LE +G++L R R +++T +G Sbjct: 3 DLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTHEG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + ++E + + S P G LRI T G+ + + +F+ YP+I+ Sbjct: 63 EIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPEIE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL L ++ ++ D IR+ + + + +I RK+ AAP Y+K P Sbjct: 123 VQLQLSDRPANLIDQAFDIGIRIGE-MPDARIIARKIAANRRLLCAAPAYIKRHGTPSVP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L K I + +W L R L N + + + + G GI Sbjct: 182 RDLQKLQCIVLRE---NDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGIL 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + V + LV ++ D P +Y YPE L + K+ AF +F+ Sbjct: 239 MRSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFV 289 >gi|78062005|ref|YP_371913.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77969890|gb|ABB11269.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 304 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 21/254 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + WD +R F V RSGS + AA L + S+++R+I LE+ +GI+LF R RG T Sbjct: 13 LPMSWDDIRYFLAVMRSGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPT 72 Query: 61 EQGSKLHRVTSEVYHKLET---TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 ++G L +E +LET + + G +R++ + + L L Sbjct: 73 DEGLHL----AEHATRLETDAHAFARAAQGAAALDGVVRVSASPVFASHFLAPRLARAQR 128 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +P ++I L+ + ++ AD A+RL +P + L R+L T+ AAP + Sbjct: 129 AWPALRIDLLGEMHAANLYAREADLAVRLSRPTE-PGLAARRLGTMRFALCAAPEW---- 183 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 + D + + D + + + WLA R N + + C Sbjct: 184 ----ADAPPDTWPFVGYDDALAQTPQ-HQWLAR----FAAGRRFAFVTNDLAAQHRACAA 234 Query: 238 GSGIALLPDYIVKD 251 G+G+ALLP ++V D Sbjct: 235 GAGVALLPRFLVDD 248 >gi|330807378|ref|YP_004351840.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375486|gb|AEA66836.1| Putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 315 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 S +WD L+ F VAR+ + AA++L + +++SR+IS LE +G LF + G LT Sbjct: 10 SLNWDDLKFFLEVARTRKASTAAKRLAVDYTTVSRRISSLEASLGTLLFEKSRTNGFVLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + L ++ S V SG +R+ T G + L F+ YP Sbjct: 70 AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + ++ I +S AD I L +P + + KL + YA YL N Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLQLYATQQYLDNHPPI 188 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L KH+ I++ D + E +LA V S + +++ Q G Sbjct: 189 RRPADLSKHSFISYVDDLAFSSE-LLYLANVLPGANAHLRSTSVIAQFVAAQQ----GRS 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ +P L+ ++ + IT + + E L+ ++ ++I Sbjct: 244 LAILPCFLAAQDPRLLPVLPEDITVTRQFWMYCREDLRKLKRITLLWDYI 293 >gi|222872882|gb|EEF10013.1| predicted protein [Populus trichocarpa] Length = 246 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 102/190 (53%), Gaps = 2/190 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F VA SFT AA+ + + ++S+S+ + LE +G +L +R R + LT+ G Sbjct: 8 EHMQIFSRVAEMASFTRAADSMGMPKASVSQAVQQLEARLGTRLLHRTTRRVQLTQDGQA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ ++ Q + Q++ P GK+R+ T L ++++ L + L +P +++ Sbjct: 68 CYERCQDLLADVDEFQGQFQQAGDAPLQGKVRLDMTTGLARHVVMPLLPQLLQSHPALEL 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + +D+ + DC +RL P+ L+ R L + + A+P Y++ P ++Q Sbjct: 128 ELSCTERRVDLVREGFDCVLRL-GPVDEPGLVARPLGLVALATCASPGYVQAHGLPATLQ 186 Query: 185 ELDKHNLITF 194 +L H L+ + Sbjct: 187 DLGGHRLVHY 196 >gi|116694467|ref|YP_728678.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113528966|emb|CAJ95313.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 306 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 11/216 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F A +GSF AA +L L++S+I + I+ LE VG +LF R R L LT+ G + Sbjct: 14 AFVAAAEAGSFAQAAARLGLTRSAIGKAIARLEARVGTRLFVRTTRSLALTDDGQAFYER 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ L+ Q L+ + +G++R++ + G++ + L E +P ++++ Sbjct: 74 CAQALEDLDAAQHMLEAGRREVAGRVRVSAPVVFGRHHVAPLLLELADRHPQLRLEGNFT 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ D + D D AIR + S L+ R L M AAP YL+ P SI +L H Sbjct: 134 DRLADFADDGIDLAIRSGRLPDSDMLVARPLGMQAMVLCAAPGYLRKHGTPASIADLASH 193 Query: 190 NLITF---GDLIPKCMEDFNW-LATVDRPIGEPRIS 221 + + G +P W LA D I P ++ Sbjct: 194 RCLVYMHGGQSVP-------WSLAGPDGNIARPELA 222 >gi|307730931|ref|YP_003908155.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585466|gb|ADN58864.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 327 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 117/278 (42%), Gaps = 47/278 (16%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F A GS + A ++ L+ ++ S +++ LE + +LF R R L LT++G Sbjct: 7 IRLFVEAAHQGSLSAAGRRMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + LQ GK+R++ T D G+NLL L EF LYP++ L Sbjct: 67 NCCRQALQSLDDAKAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ + D AIR P Q SSL+ RKL A+P Y+ EP D Sbjct: 127 LSDSLTNLVQEDIDLAIRFGVP-QDSSLVARKLARNRRVLCASPEYIARKGEP-----KD 180 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--------------PRISCLQVNSYLSIMQ 233 ++L F ++ L+T P+ E P + Q N + Sbjct: 181 PNDLANFDCIV---------LSTGSGPVNEWRFTRGDEVQHYTVPLETARQTNDGAVARE 231 Query: 234 YCVLGSGIA------------------LLPDYIVKDNP 253 + + G GIA LLPD+ D P Sbjct: 232 WALRGYGIAVKSMWDVEADLRSDGLKILLPDWRYPDAP 269 >gi|193077960|gb|ABO12874.2| transcriptional regulator lysR family [Acinetobacter baumannii ATCC 17978] Length = 298 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 13/194 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63 WD + F VV GSF+ AA +L ++Q ++ +I LE ++G LF R GL TE Sbjct: 7 WDDQKFFLVVLEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLKPTEHAL 66 Query: 64 -----SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 ++ + S+ + + + + L +G +R++ + LG +L L +F LL Sbjct: 67 ALEVPARAMQRASDYFMRTASAPLNLI------AGSVRVSVSDFLGTMVLPQLLSKFRLL 120 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP++ I+L L+N ++ AD AIR+ P+Q +L+ +K+ + + YA Y++ Sbjct: 121 YPEVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKG 179 Query: 179 EPLSIQELDKHNLI 192 P +++L +H+LI Sbjct: 180 NPTCLEDLRQHDLI 193 >gi|191167601|ref|ZP_03029412.1| transcriptional regulator, LysR family [Escherichia coli B7A] gi|309795290|ref|ZP_07689708.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] gi|190902362|gb|EDV62100.1| transcriptional regulator, LysR family [Escherichia coli B7A] gi|308120940|gb|EFO58202.1| LysR substrate binding domain protein [Escherichia coli MS 145-7] Length = 302 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L + + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNYQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ED T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|2501844|gb|AAC21675.1| transcriptional activator PtxR [Pseudomonas aeruginosa PAO1] Length = 312 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F VA SFT AAE L LS+S +S Q+ LE ++GI+L R R +TLT++G Sbjct: 14 NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + +L+ ++++ +PSG+LRI D + + F+ +P +Q++ Sbjct: 74 LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ D++ D+ D A+R+ P + S L KL A A P YL L + Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L + I L W T +R + L N+ L++ + + G+G++ Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +LP ++V LVR++ P +Y YP A +++AF Sbjct: 247 VLPSFLVAREIARGRLVRLLFGWRLPQGGIYALYPSARYMPVRVRAF 293 >gi|299069759|emb|CBJ41038.1| Transcriptional regulator, LysR family precursor [Ralstonia solanacearum CMR15] Length = 303 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/293 (21%), Positives = 131/293 (44%), Gaps = 12/293 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F ++GSFT A L L++S++ + ++ LE+ + +L R R L+LT+ G ++ Sbjct: 11 AFVSAVKTGSFTATAAALGLTRSAVGKSVARLESRLSTRLLQRTTRTLSLTDDGRAVYER 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ LE + + +P+G L++ + GQ + L ++ +P+++ + Sbjct: 71 WRQILEDLEEVEATMAIRRGQPAGTLKLTAPLSFGQRHILPILDHYMKQWPELRADVRFT 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D AIR+ P + L+ R + A+P YL P + EL H Sbjct: 131 DRFVDVVEEGFDIAIRIGAPQDDTQLLTRTVAWQQFVTCASPTYLAARGMPQTPGELAGH 190 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + I F + W P G L ++S ++ + + G G+ LP Sbjct: 191 DTIAF----VSGEQPSPWRYRT--PEGLYLRESAGRLNMDSSEAMREAALAGFGLLHLPT 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 YI ++ LV +++ P + YP + +++AF + + + +D Sbjct: 245 YITGNDLRAGTLVEVLKPFRAPPDPIRVVYPSKRHLSPRIRAFIDLLVARWQD 297 >gi|146279324|ref|YP_001169482.1| hypothetical protein Rsph17025_3293 [Rhodobacter sphaeroides ATCC 17025] gi|145557565|gb|ABP72177.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17025] Length = 312 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 8/295 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +F WD L+ F VAR+G + AA QL S ++SR+I LE + ++LF R+ RG LT Sbjct: 3 NFTWDDLQFFLAVARTGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L + + E Q+EL G LR+A G + L F +P+ Sbjct: 63 VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTSRFPN 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++LI + + +S AD + L P +++ K+ +H YA YL + Sbjct: 123 ISLELITLPQIMSLSRREADLTVTL-DPPKATPYHSEKITDYSLHIYATRSYLADHPPVR 181 Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L KH I + ++I ++L+ V I + + +S + + G G Sbjct: 182 HRDDLLKHPFIGYIEEMI--FAPGLDYLSEVHPGIR----ASFKSSSIFNQLAATRNGLG 235 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + +LP YI + P+L ++ + T + ++ + ++ +F+ + R Sbjct: 236 LCVLPFYIARMFPDLEMVLPHEVVLRRTYWLTCHRDVRPLPRERSVMSFLLEEGR 290 >gi|325916886|ref|ZP_08179134.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325536931|gb|EGD08679.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 325 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F VA GSFT AAE L L ++S+S + LE +G +L +R R + LT G+ Sbjct: 27 ESLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTGDGAA 86 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ ++ Q + G+LR+ + + +N + L FL +P ++++ Sbjct: 87 FYQRSRDLLDDMDELHSMFQREHGQLRGRLRVDMSAGIARNFVIPALPAFLARHPQLEVE 146 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC +R+ ++ +SL+ R L + + A+ YL P + + Sbjct: 147 ISGTDRRVDVVREGFDCVLRV-GTLEDTSLVARPLGAFRIVSCASAEYLARRGMPTCLDD 205 Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H+L+ T G P E ++ A P+ P + VN+ + + G GI Sbjct: 206 LAQHDLVHYVPTLGQRSPG-FEYYDGQAYHLLPMRGP----VTVNNGDGYLAAALAGLGI 260 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ D+ L+ ++ ++ V + + +++AF +++ Sbjct: 261 IQAPASPLRPYLDSGALIEVLAELAPEPMPVTLLHAQRRHLPQRVRAFMDWV 312 >gi|324018945|gb|EGB88164.1| transcriptional regulator, LysR family [Escherichia coli MS 117-3] Length = 225 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VVA SFT AA +L ++QS++S+ + +E +G++L R R + TE G L Sbjct: 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V + H +++ L E +PSG +RI T + +L ++ FL +P+I IQL Sbjct: 69 SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D D+ + D +RL + + R I M +P Y P S+ +L Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188 Query: 188 KHNLITF 194 H I Sbjct: 189 DHQAINL 195 >gi|295680773|ref|YP_003609347.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440668|gb|ADG19836.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 300 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 10/248 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + VF V +GSFT AAE+LHL++S+I + I+ LE +G++L R R TLTE G Sbjct: 5 DGVAVFVKVIEAGSFTVAAERLHLTRSAIGKVIAKLEARLGVRLLQRTTRSQTLTEAGRS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L+ + EL+ +P G+LR++ + G + + L +P +QI Sbjct: 65 YYDRCVRALAELDAAEAELETGYSEPRGRLRVSAPLAFGHHCVAPVLFGLARKHPQLQID 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D A+R+ S+SL R L AAP YL P+ I + Sbjct: 125 ISFTDRAVDLVEENFDLAVRIGDLRDSTSLAARHLGVQETSIGAAPAYLARYGTPVDIGD 184 Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGI 241 KH I + G + P + D + V+R + EP++S ++ +I V G G+ Sbjct: 185 FGKHAGIAYSRAGVVSPWRVLDTD---GVERELLIEPQLS---LDDIQAIAGAGVAGLGL 238 Query: 242 ALLPDYIV 249 LP +++ Sbjct: 239 VQLPCWLL 246 >gi|260777132|ref|ZP_05886026.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606798|gb|EEX33072.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 297 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 21/297 (7%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 DW ++ + V GSF AA +++ + S+IS+++ LE +G++L R R +T TE Sbjct: 1 MDWIQSVQSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G+ + ++ E + + P+G L+I TI +G L L +FL +YPD Sbjct: 61 AGALFYERAKVQLDGWQSIVDETRSVNQTPAGLLKIGATIAVGSKFLVQYLDDFLQMYPD 120 Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKN 176 I+IQLI ++S+D + + + I+ + + K + H YA+P YL Sbjct: 121 IRIQLITTTPGQLPELSLD-----LFISREIEQLNSLSFKASALFEHKAGFYASPEYLDK 175 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 EP S+ EL HN + +G+ + + L + I ++ + + + Sbjct: 176 YGEPQSVDELTGHNTLIWGERPHREIT----LTNGKKIILSGNLATTNPEALFYAAKNAM 231 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + D ++KD L RI+ + TVY YP+ + K F +++ Sbjct: 232 ---GILISNDVMIKDELKAGTLKRILPRITADEATVYAYYPKLDYQHTRTKLFLDYL 285 >gi|152996162|ref|YP_001340997.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150837086|gb|ABR71062.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 298 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 145/291 (49%), Gaps = 12/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F V + SF+ AAEQL++S++ +S+ IS LE ++G++L YR R L+L+ G Sbjct: 7 EGIREFLAVVEAHSFSKAAEQLNISRARVSQIISRLEKDLGVQLLYRSTRSLSLSPAGET 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQI 124 +++ + +LE + Q + G++RI + L G+ +L L F+ P ++I Sbjct: 67 FYQLARQGVDQLEHAVLSAQNAHSSIGGQIRINSVGGLFGEEILAPILIRFMNENPKVEI 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + D+ D +R+ + +S+LI RKL + + A P Y + + S + Sbjct: 127 ELSFSSTREDLIESQYDLVVRM-GTLSNSNLIGRKLTSYTNYLVANPTYFDSMPKLNSPK 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243 +L H LI G + + + P+ + ++ C S +++ L G+GI+ Sbjct: 186 DLLDHTLIN-GSVKRWSFTHISSKEKYELPV-QGKLKC----SNGHVVKLATLEGTGISR 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P Y VK + L+ ++ D P+ V YP++ + ++KA +++ Sbjct: 240 QPSYYVKQDIQSGRLIVLLPDWQLPNSDVTLLYPQSRNISLRVKALVHYLM 290 >gi|90409204|ref|ZP_01217316.1| transcriptional regulator [Psychromonas sp. CNPT3] gi|90309692|gb|EAS37865.1| transcriptional regulator [Psychromonas sp. CNPT3] Length = 294 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 14/291 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR +F VA +GSF AAE+++ S S IS++I LE VG +L R R + LTE Sbjct: 2 DTLRSMALFVKVAETGSFKQAAEEMNYSNSLISKEIGKLEQMVGARLLQRSTRKIHLTEI 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + +QE +P G+L+I + LG L F L+P++ Sbjct: 62 GLGYLERCRKILSADQEAHDYVQEMQGQPKGRLKINAPMTLGITDLSLAFAAFTELHPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +D+ D R+ + + + + + +H P YL+N Sbjct: 122 ELDVDLSDEPVDLIAQGYDIGFRVSSTFIDVNYVGKPIASFSLHLVTTPKYLQNHGPIEC 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L +HN + K TV L+ N+ + + + G+ I Sbjct: 182 PEQLSEHNFYLYSLANSKNKLPIGGGITVK--------GNLKANNTIFLRDALLQGNAIG 233 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P ++ LV ++ D P Y YP KL F F+ Sbjct: 234 LFPSFVCAKEIKSGLLVELLVDYPLPKLNFYVLYPSRHYTPPKLAKFVEFM 284 >gi|86144613|ref|ZP_01062945.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222] gi|85837512|gb|EAQ55624.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222] Length = 309 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 1/181 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSFT AA + SS+S+QI LE ++G++L R R +LT G Sbjct: 5 NQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAGED 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T + + Q +P G LRI + I GQ LQ + +F+ YPD+QI Sbjct: 65 ILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQIV 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD+K +I D A R K ++ S+LI +K+ + A+ ++K EP + Q+ Sbjct: 125 LSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKEHGEPKTPQD 183 Query: 186 L 186 L Sbjct: 184 L 184 >gi|84385422|ref|ZP_00988454.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01] gi|84380019|gb|EAP96870.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01] Length = 309 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 1/181 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSFT AA + SS+S+QI LE ++G++L R R +LT G Sbjct: 5 NQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAGED 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T + + Q +P G LRI + I GQ LQ + +F+ YPD+QI Sbjct: 65 ILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQIV 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD+K +I D A R K ++ S+LI +K+ + A+ ++K EP + Q+ Sbjct: 125 LSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKQHGEPKTPQD 183 Query: 186 L 186 L Sbjct: 184 L 184 >gi|119387183|ref|YP_918238.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377778|gb|ABL72542.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 297 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 10/263 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR+F VAR+ S + A +L + S++ R+++ LE +G KLF + +G L + Sbjct: 1 MDWDDLRIFLAVARADSLSGAGRRLGIDASTVGRRVARLEGALGAKLFVKTPQGYALAPE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L V L + E +G+LRI LL +P + Sbjct: 61 GERLLPHAEAVEAALSGAE-EALSGPGDLTGQLRIGAPDGCANYLLPQVCARLSEAHPQL 119 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +IQ++ + ++S AD AI + +P Q+ L+ ++L +H A YL+ S Sbjct: 120 EIQIVALPRVFNLSKREADMAIAVSQP-QAGRLVVQRLTDYQLHLAAHEDYLRAHPPIRS 178 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L H +I + D+I + ++L + L NS MQ +G+G+ Sbjct: 179 REDLRGHRMIGYIADMI--FDRELDYLTETG-----AEWAALTSNSVSVQMQAIRVGAGL 231 Query: 242 ALLPDYIVKDNPNLVRIMEDVIT 264 ++ D+ + P + R++ D I+ Sbjct: 232 GIVHDFAIPFCPGVRRVLADQIS 254 >gi|126443540|ref|YP_001063714.1| LysR family transcriptional regulator [Burkholderia pseudomallei 668] gi|126223031|gb|ABN86536.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 668] Length = 322 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q ++ R ++ LE + + LF R + GL T+ Sbjct: 14 WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 73 Query: 65 KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L R +E +E+T L ++ G +RI+ + +G +L + +P Sbjct: 74 AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L L N+ D+ AD A+R+ +P Q + LI R + I + +A YL C P Sbjct: 130 ALTVELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARCGTP 188 Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 EL +H LI F I K F+ A L+ +S L+ + Sbjct: 189 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 237 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G+GI + K +P LVR++ ++ E L+ + + +A Sbjct: 238 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 288 >gi|78063311|ref|YP_373219.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971196|gb|ABB12575.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 300 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 138/293 (47%), Gaps = 19/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++++ + G+FT AA+ L L + ++++ + LE E+G++L R R +++T +G H Sbjct: 7 MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTAEGEAFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + P G+LRI + L + ++ L +F YP I++ L Sbjct: 67 ARCVQLLGSIDDAFASFPKQRAIPKGRLRIDIALALAKTVVIPALPDFQQRYPQIELVLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D+ + DC +R+ K ++ SS++ R + + M A+P Y+ P ++ +L Sbjct: 127 ASDQPADLIGEGIDCVVRVGK-LKDSSMVARTVGAVPMVTCASPAYVSRHGLPRTLDDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + F + + ++ + RP GE +S +S L+ +L G+A L Sbjct: 186 THRAVNFFTGSNRKLLEWTF-----RPHGE-TVSVKLASSLLTDNSEALLSCGLAGL--G 237 Query: 248 IVK----------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IV D+ L+ ++ V V YP + K++AF +++ Sbjct: 238 IVHGLRPALQPSIDSGQLIELLPGVPAEPKPVSVLYPNRAHLSDKVRAFIDWL 290 >gi|89069746|ref|ZP_01157082.1| transcriptional regulator, LysR family protein [Oceanicola granulosus HTCC2516] gi|89044692|gb|EAR50803.1| transcriptional regulator, LysR family protein [Oceanicola granulosus HTCC2516] Length = 292 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 11/298 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R I LE+ +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARKGTVSGAAEVLGVHHATVIRHIDSLESRLGVKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L V + ++ SG+L + T++ LL L +F +Q Sbjct: 63 QDLLTVAQTTDDQFTQLAGRIRGRGEGVSGEL-VVTSLATLSALLAPVLVDFQRENEGLQ 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ + A A+R P Q +++Q ++ + A+ Y+ +P S Sbjct: 122 VRYLTGSRLFRLEYGEAHVALRAGAAPEQPDNVVQ-PFLSQAIRMVASRDYIARRGKPES 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +++L +H+ + D + + W LA V R R+ + S++ G+GI Sbjct: 181 VEDLKQHDFVGL-DPLDSRVPFMRWLLAQVPR----ERV-VFRTMENQSVVDAIAAGAGI 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 L ++ + D +V ++ + ++ L T K++AF F+ +A+ W F Sbjct: 235 GFLCEWDI-DRERMVEVLPAMEEWQSRLWIVTHVDLHRTPKVQAFLKFLKERAKGWTF 291 >gi|330987281|gb|EGH85384.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 300 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 125/287 (43%), Gaps = 19/287 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF +A S S + AA +L LS +ISR+++ LE ++G++LF+R R ++LT +G Sbjct: 6 IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + L+ + SG LR+ GQ ++ L +L P + I L Sbjct: 66 PHAKTILEANEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPALSIDLT 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI+ D AIR+ I+ S+L+ R L +P YL +P ++EL Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCVSPDYLARHGKPALLEELR 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243 H I + W GEP Q NS ++ C G G+A+ Sbjct: 185 HHPCI--------ALHAMPWWPFTRN--GEPITIRAQGPFSANSVEAVRTACKQGMGLAM 234 Query: 244 LPDYIVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAF 286 L + V+ N + ED + +V P + +++ F Sbjct: 235 LTYWDVRQEINEGSLQQVDFEDAMPEQLSVTAVLPTRQRVPHRVRQF 281 >gi|312883144|ref|ZP_07742875.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369304|gb|EFP96825.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 299 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 101/187 (54%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L++S+S +SRQI+ LE ++ + L R R L LT+ G + + Sbjct: 10 IRSFVLIAQLGNFTKAAEALNVSRSHVSRQINSLEKQMQVTLLTRSTRSLKLTQAGKRFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ I + + + G +R+ +G+ ++ + F+L +P IQ+ L Sbjct: 70 LQCERAINGIDQALIAAVDDTKEVRGLIRVNCVGGYIGEKIISRYVAAFMLEHPQIQVHL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ID+ D D A R+ + ++ SS I +KL+ + + + A+P Y+ P EL Sbjct: 130 DFSSNRIDLIQDDFDIAFRMGE-LEDSSFIAKKLMDVDIVSLASPSYVHKYGNPQHPNEL 188 Query: 187 DKHNLIT 193 +H +T Sbjct: 189 AEHRCLT 195 >gi|190892732|ref|YP_001979274.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190698011|gb|ACE92096.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 301 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 123/280 (43%), Gaps = 6/280 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V + GS + AA +L L+Q +I R + LE +G +LF R GL T+ Sbjct: 7 WDFYRSFLTVLQHGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + +G +RI+ + + +L L +P++QI Sbjct: 67 ALKPYAETLAATTAALLRTASSQRERVAGTIRISASEVIAVEVLPAILGPLQDAHPELQI 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + D+ AD A+R+ +P Q +L+ R++ I + +A YL+ P S+ Sbjct: 127 ELSASDAIEDLVNREADIAVRMAEP-QQDALVVRRIGDIPLGFHAHRRYLERYGIPQSVA 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H LI F + L P+ + + +S L+ + G GI L Sbjct: 186 DLANHRLIGF-----DRQTAYVRLVMKRYPVPDGIKFAYRTDSNLAQLAAIRAGVGIGLC 240 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + ++NP+LV ++ D + E+LK++ + + Sbjct: 241 QIGLARENPDLVHLLADAFNIPLGTWVAMHESLKSSPRCR 280 >gi|330953396|gb|EGH53656.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae Cit 7] Length = 305 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 4/246 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + +P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ P ++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQYGTPRNLN 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 EL +H +I + ++A D E +C + VNS + C G G+ Sbjct: 183 ELAQHQVIEYFSTSTGKRYGLEFMA--DGMDVEHASACSIAVNSADGYVAACEAGFGLIQ 240 Query: 244 LPDYIV 249 +P Y V Sbjct: 241 VPRYHV 246 >gi|316932287|ref|YP_004107269.1| LysR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315600001|gb|ADU42536.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris DX-1] Length = 298 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 131/301 (43%), Gaps = 17/301 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +R F V GSF A +L + S++S+++ LE +G++L R R + +T + Sbjct: 7 LDLSAVRAFQSVVLEGSFAGGARRLGVPLSTVSKRVRDLEARLGLRLIERTTRKMRVTAE 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + + + +T + E+ P G LRIA LGQ L+ G +P+I Sbjct: 67 GEALANHATRLLAEADTLLRAMTETGTAPRGHLRIAAPNLLGQLLIGGVAALCRARFPEI 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLKNCREP 180 ++ + + D+ D D IR P++ SS I RKL++ + AAP + + P Sbjct: 127 TLEFVFTDAPPDLIEDRFDAVIRF-GPLEDSSQIARKLLSGAVRLVAAPGLNGIDRIAHP 185 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLG 238 + L + + P + + D EP IS S L+ + G Sbjct: 186 RDVANLPIIH------VSPPWSHAWMFQRESDEVTVRFEPAIS---FPSMLAARDAVIAG 236 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +G+ +LP + N LVR++ + P +Y Y T +L+AF + + R Sbjct: 237 AGLTMLPGILAAPEINAGRLVRLLPEWTGPEKAMYVVYGAPDSITPRLRAFLDILTENLR 296 Query: 296 D 296 D Sbjct: 297 D 297 >gi|90577391|ref|ZP_01233202.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] gi|90440477|gb|EAS65657.1| transcriptional regulator, LysR family protein [Vibrio angustum S14] Length = 305 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 12/296 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+V VA S T AA L + ++ S + +E +G+++F R R L L+ G + Sbjct: 4 EDLQVILKVAEFRSITAAATNLDIRTATASAAVKRVEAYLGVEIFVRSTRHLRLSSAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E LE ++ +QE G++RIA + DLG+NL+ L EFLL YP++ ++ Sbjct: 64 YLPQCEEALKMLEHAKVNMQEELGIIDGEIRIALSSDLGRNLVTPWLDEFLLQYPNVSLR 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +ID D D A+R P +L K+ + A+P YL P + Sbjct: 124 SSISDSNIDFYRDSVDMALRYGSPTD-QNLYGFKICDVPRVVCASPSYLAENNTPTHPSD 182 Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 L +HN + + D++ WL + + + ++ + N + ++CV G G+A Sbjct: 183 LLEHNALFYQLYDVLQN-----EWLFSNEETTHKVKLKGNRASNDGDLVRRWCVAGKGVA 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + + D+ ++ IM++ T ++ P T ++ R+ K + Sbjct: 238 IKSSLDMSDDLLAGRVLSIMQEYKTAPTELWLVCPSRQSVTPTVRLLRDLFRDKTK 293 >gi|16264224|ref|NP_437016.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|307316716|ref|ZP_07596159.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|15140349|emb|CAC48876.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|306897914|gb|EFN28657.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 298 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 10/296 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +RVF VA SFT AAE L L +S+I+ + LE +G++L R R + T G Sbjct: 4 FDAMRVFARVAERRSFTLAAEDLGLPRSTITDAVKQLEGRLGVRLLQRTTRVVRTTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + S PSG LRI ++ L LK FL YPDI++ Sbjct: 64 AYYHRCVRLIADLEDAEAVF--SGASPSGLLRIDVHGTQARHFLLPGLKVFLDRYPDIRL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +DI + DC +R + S LI RKL + +A+P YL P + Sbjct: 122 HISETHQPVDIVREGYDCIVRAGH-LADSPLIGRKLAELKRGTFASPEYLARFGTPHVPE 180 Query: 185 EL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L D H ++ + F + +A R + P + + ++ C G G+ Sbjct: 181 DLFDGHQMVGLLSSDTPSVAPFAFVVAGKARELTLPTVVTV-TGPETNVASACA-GLGLI 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +P Y V + LV ++ D V+ Y + + +L+ F ++I + R Sbjct: 239 QVPRYRVASELASGALVEVLTDFPPSPLPVHVLYSHTRQLSPRLRVFIDWITERYR 294 >gi|304395242|ref|ZP_07377126.1| transcriptional regulator, LysR family [Pantoea sp. aB] gi|304357495|gb|EFM21858.1| transcriptional regulator, LysR family [Pantoea sp. aB] Length = 292 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 1/190 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR++ V +G+FT AAEQL LS+ +SR+++ LE +G++L R+ R L++T+ G Sbjct: 4 EDLRIYVAVMHAGNFTAAAEQLMLSKQYVSRRMAALEASLGVRLLIRNTRKLSVTDAGLL 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + +++ ++ + E G RI + G + L + EFL +P +Q Q Sbjct: 64 FAQHAQRILDEIQEAELAVSEQQQALRGTFRINMPMSFGMSHLSPLIAEFLSHHPALQFQ 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ D+ + D AIR+ + S+LI R L + +P YL+ P + Sbjct: 124 IELADRYADVIGEGVDMAIRI-GTLADSTLIARPLGELKRVICCSPRYLERAGTPQQPEA 182 Query: 186 LDKHNLITFG 195 L +H + +G Sbjct: 183 LLQHACLRYG 192 >gi|300714966|ref|YP_003739769.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661] gi|299060802|emb|CAX57909.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 302 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 5/268 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F GSFT AA+ LHL+ S+IS+ ++ LE +G +LF R R L LT+ G + Sbjct: 13 FVASVEHGSFTAAADSLHLTSSAISKSVARLEARLGSRLFERTTRRLALTDAGQAFYETC 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + V +L + L P G+LRIA G+ + + EF P++QI L + Sbjct: 73 TRVLSELAEAESVLAAQRAIPVGRLRIAVPNTFGRMQVMPLINEFCQQNPEMQIALSFSD 132 Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ + D AIR+ P SL R L + A+P YL P S+Q L + Sbjct: 133 RFVDLFEEGVDIAIRIGGSPDFPPSLGYRFLGNERLIFCASPDYLAQHGVPDSLQALTER 192 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I + D + ++ + R I + + + + V G G+A + +++ Sbjct: 193 RAIVY-DRVDGSTSPWHIRSPDGRTITRTLPYRMALGDGEAQVAAVVAGLGVAQMATWLM 251 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYP 274 + + LVRI+ ++ ++ +P Sbjct: 252 EKELASGALVRILPELAVEGLPLFIVWP 279 >gi|218675955|ref|YP_002394774.1| Transcriptional regulator, AsnC family [Vibrio splendidus LGP32] gi|218324223|emb|CAV25484.1| Transcriptional regulator, AsnC family [Vibrio splendidus LGP32] Length = 309 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 1/181 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSFT AA + SS+S+QI LE ++G++L R R +LT G Sbjct: 5 NQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAGED 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T + + Q +P G LRI + I GQ LQ + +F+ YPD+QI Sbjct: 65 ILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQIV 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD+K +I D A R K ++ S+LI +K+ + A+ ++K EP + Q+ Sbjct: 125 LSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKEHGEPKTPQD 183 Query: 186 L 186 L Sbjct: 184 L 184 >gi|325528096|gb|EGD05303.1| LysR family regulatory protein [Burkholderia sp. TJI49] Length = 319 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 9/291 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + + G TLT Sbjct: 11 NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + +++ + ++ + SG +R+ +T G L L F +P Sbjct: 71 AEGQRLVAYADAMETTVQSARDQIANTGEALSGHVRVGSTEGFGCFFLAPQLARFRAAHP 130 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ + ++ AD AI L +P + + KL + YA YL N Sbjct: 131 QVTVDLLPVPHFVSLTKREADLAITLERP-ERGPYVCTKLCDYQLRLYATRDYLANHAPI 189 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 +L +H I++ D + E L ++R + P S L+ S ++ + G Sbjct: 190 TCTDDLAQHAFISYVDDLAFSSE----LLYLERAV--PGASAGLRTTSVIAQYFAALQGG 243 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A+LP ++ P LV ++ + + + E L+ ++ A +++ Sbjct: 244 GLAILPCFMAARQPALVPVLPGEVAVTRCFWLTCREDLRKLRRVTALWDYL 294 >gi|326404632|ref|YP_004284714.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325051494|dbj|BAJ81832.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 305 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 14/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF GS A + LS S + +S +E ++G++L R R L LT+ G Sbjct: 7 MSVFVAAVEEGSLVGAGRRFGLSPSMAGKHVSAIEDQLGVRLLQRSTRVLKLTDVGQAYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + E E Q + G LR+A G L + +L YP++ ++ Sbjct: 67 KRCKLILEDYEDANREAQRAHQTVRGVLRVAAPTTFGAIHLGPVVARYLAAYPEVTVETT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ M+ D AIR+ + ++ S L+ ++L HM AAP +L P ++++L Sbjct: 127 LSDRYVDLLMESIDVAIRIGR-LKDSDLVAQRLAPCHMVFCAAPSFLARHGVPKTVEQLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVLGSGIAL 243 + + F + + +W T+ P G + L VN+ ++ + G G+A Sbjct: 186 QAPRVAFTEAVSAG----DW--TLTDPSGRTHLIDGPLRLAVNNMQMLLAAALAGIGVAY 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 P ++ + + L +M T ++ YP + KL+ F Sbjct: 240 GPSFVFGESIASGTLQILMSQHKTSELAIHAIYPTKRHVSLKLRRF 285 >gi|323528951|ref|YP_004231103.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385953|gb|ADX58043.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 306 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 23/292 (7%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 VA +G F+ AA++L ++ SS++R + LE +G L R R ++LT+ G S+V Sbjct: 13 VADAGGFSKAAQRLGVATSSVTRLMDSLEASLGAALLTRTPRKVSLTDAGLAYVEQVSKV 72 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 L + +S P G LR++ + L +L FL +P + + + + ++ + Sbjct: 73 IDDLAEADESVFDSGAAPVGSLRVSVPSTYSRLCLAPHLAAFLAEHPRVVLDVAVGDQFV 132 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193 D+++D D AIR+ + ++L+ +KL + A+ YL+ P + +L H + Sbjct: 133 DLAVDRIDVAIRIGFAERDANLVVKKLADNPRYVVASHDYLQRSGTPRTPADLAGHECVR 192 Query: 194 F---GDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPDY 247 F G + + W T +R E R+ L N+ + + V G GIALLP + Sbjct: 193 FAYGGGYRARQI----W--TFERDGVEERVDVRGHLLSNNLDILFEAAVAGRGIALLPAW 246 Query: 248 IVKDNPNLVRIMEDVITPSF---------TVYFCYPEALKNTGKLKAFRNFI 290 V + R+M + SF VY Y + + K++AF F+ Sbjct: 247 QVAAEIHAGRLMR--LFESFDARPHSGDAVVYAAYLPNRRQSSKVRAFVQFL 296 >gi|227356652|ref|ZP_03841038.1| LysR family transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163160|gb|EEI48091.1| LysR family transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 297 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 41/314 (13%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D++R F V +GSFT AA+ L LS+S +S I LETE+ + L R+ R TLT Sbjct: 1 MQNQIDRIRSFIAVVDTGSFTQAAKYLRLSKSMVSIHIKALETELNVSLLNRNTRRFTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G L++ +V +LE T + + G LR+ +T + G++ + L +F+ L+P Sbjct: 61 ETGEILYQDFRQVLVQLEQTLDKARLGQQNLQGTLRLTSTAEFGEHYILPLLHQFMCLHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q I ++ D+ D AIRL ++ S+ RKL + +PH LK Sbjct: 121 QLKVQYIFNSSIDDLINHKLDLAIRL-GALKDSNYRYRKLADYTIKLVVSPHLLKKY--- 176 Query: 181 LSIQELD-------------KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227 IQE+ +H+ ++ D I + + +A + N+ Sbjct: 177 -PIQEIADLAAVPYLANSNLRHSKLSQQDKINQLFSQLHSMA------------LFETNT 223 Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDV-----ITPSFTVYFCYPEALKNTGK 282 ++ Q + G+ +LP++ ++ ++ + + S +V F + E + + Sbjct: 224 ISALKQMALKQMGMTILPEWYIQQEITQGELVSPIPELTLLNQSISVIFPHGEHMPRKTR 283 Query: 283 LKAFRNFI-FLKAR 295 L FI FLK R Sbjct: 284 L-----FIDFLKER 292 >gi|169634895|ref|YP_001708631.1| putative transcriptional regulator; transcriptional activator [Acinetobacter baumannii SDF] gi|169153687|emb|CAP02885.1| putative transcriptional regulator; transcriptional activator [Acinetobacter baumannii] Length = 300 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G LR+ + +++ + +F YPDI+I+ Sbjct: 66 FLIKARKILNELNAAEEELQKSDQGTAGLLRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + ++ A+P YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184 Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L++H+LI F + P + D + A S ++ +S ++ Q + G G Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IA L ++ I KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|160899980|ref|YP_001565562.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365564|gb|ABX37177.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 300 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 99/191 (51%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +RVF V + FT A ++L ++ S+ SR + LE+E+G +L R++RGL+LT+ G Sbjct: 4 WQAMRVFCGVVDAQGFTAAQDRLGMTHSTASRHVKWLESELGTQLLQRNSRGLSLTDAGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ +L+ + L + + +G LRI + +G L L EF +P++++ Sbjct: 64 SYYLSCVQLLEQLDAAEAALAQRRARVAGVLRITLPLAVGAIELGDWLPEFEQQFPELEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL+ ++ +D+ + D A+R+ + + S L R L + A+P YL Sbjct: 124 QLLCTDRLVDLVAEGVDAAVRISRQLPDSGLQARLLTHSPLVLVASPAYLMRQGVVQVPG 183 Query: 185 ELDKHNLITFG 195 +L +H + F Sbjct: 184 QLAEHRALAFA 194 >gi|89068516|ref|ZP_01155913.1| probable transcription regulator protein [Oceanicola granulosus HTCC2516] gi|89045935|gb|EAR51995.1| probable transcription regulator protein [Oceanicola granulosus HTCC2516] Length = 296 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 26/294 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F AR SF AAE+LH++ +++S QI LE ++G+ LF R R + T+ + Sbjct: 11 LRTFEAAARHESFKRAAEELHVTNAAVSHQIKTLEDKLGLSLFRRRGRAVQPTDAAKRFA 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + +E +ELQ + + SG LRIA T G ++ L F LYP+I+++ Sbjct: 71 GRLAQAFDTIEAATMELQGNPM--SGTLRIAVTPFYGNRIVLPRLSRFHALYPEIRVEPE 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-----AYAAPHYLKNCREPLS 182 + I+ + D A+R + L I MH AAP + PLS Sbjct: 129 MSETRINFAKTDLDGALRY------GTGNWPGLTAIAMHEDQLLPVAAPTVVSRRDLPLS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVLGS 239 E+ + +T G + ED +W A + +G ++ Q+ Y S ++ G Sbjct: 183 AAEIAQ---LTLGYI--DGQED-DWSAWFEM-MGYEGVASTQMIGYGSRARVVDLAFSGH 235 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+AL + + +LVR+ + ++ ++ YP+ +L AF ++ Sbjct: 236 GVALADRRLTAADVTAGHLVRLNDTPVSTGRGIWLVYPDTEFPDPRLMAFGDWF 289 >gi|115359776|ref|YP_776914.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285064|gb|ABI90580.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 302 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 19/254 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V GS T A L + S +SR I+ LET +G++L R R L+LTEQG Sbjct: 11 VEAFVTVIEKGSMTAGAVALGSTPSVLSRAITRLETRLGVQLLRRSTRRLSLTEQGRLYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + +Q +G +RI+ G L L++F +P+++++L Sbjct: 71 EQSRAAFLLIDDAERAIQGHGGTLTGHVRISVPTTYGHYRLPPLLRQFTQQHPEVRVELN 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D+ + D AIRL + + S L+ RKL + A+P Y+ P ++ +L Sbjct: 131 IANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVASPEYVARAGVPENVADLA 189 Query: 188 KHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H + F G + P +D +WL P + + L ++ G Sbjct: 190 HHLCLPFMLPSSGRIAPWVFRDDGQDIDWL---------PPSNVAVSDDVLGVVSMAQSG 240 Query: 239 SGIALLPDYIVKDN 252 +GI D+IV+D Sbjct: 241 AGICQTYDFIVQDR 254 >gi|260463108|ref|ZP_05811311.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259031229|gb|EEW32502.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 297 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/301 (26%), Positives = 137/301 (45%), Gaps = 22/301 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V SFT AA L L +S+ + I LE +G +L R R + T+ G Sbjct: 5 DTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + ++E + + + +P G LRI + L + L L EFL + I +Q Sbjct: 65 YYRRCLSILAEIEDAEAAFR--NAEPFGLLRIDASTLLTRTFLLPRLPEFLARHSRIDLQ 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC IR+ +P S +I R+L I A+P YL+ P S Sbjct: 123 IGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLAMIREMTCASPAYLERHGTPASPDA 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 LD H + F G+++P F + TV E R+ + N+ + LG Sbjct: 182 LDGHQAVGFVSSRTGEVLP-----FEF--TVGGKTREVRLPGRVAANNSDTAADLARLGL 234 Query: 240 GIALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLK 293 G+ P Y KD + L+ ++ D + YP+ + + +L+ F ++ IF + Sbjct: 235 GLIQAPRYRFEKDLADGTLIEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAE 294 Query: 294 A 294 A Sbjct: 295 A 295 >gi|255605119|ref|XP_002538342.1| HTH-type transcriptional activator aaeR, putative [Ricinus communis] gi|223512645|gb|EEF24040.1| HTH-type transcriptional activator aaeR, putative [Ricinus communis] Length = 192 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 4/193 (2%) Query: 1 MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 MSFD + V V GSF AE + ++ S +SR I LET +G++L R R + Sbjct: 1 MSFDGRILSGVSVLAAVVEGGSFVKGAELIGITDSGVSRAIGRLETRLGVRLLDRTTRSV 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLT++G + + + +E + + ++ G+L++ +L G L F Sbjct: 61 TLTDEGRRFYEEVKPHLNAIEDAAVVVSGAATAVRGRLKVDIDPFFLPLVLAGRLGGFCE 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 YPD+ I+ + D+ D D AIR +P + +SLI RKL+ + A+P YL+ Sbjct: 121 RYPDLSIEFVTREHVGDLVADGIDLAIRFGQP-RFASLIARKLIEAPILTVASPRYLERH 179 Query: 178 REPLSIQELDKHN 190 P ++L H Sbjct: 180 GRPAHPRDLSVHR 192 >gi|218675083|ref|ZP_03524752.1| LysR family transcriptional regulator [Rhizobium etli GR56] Length = 299 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 9/291 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ ++R F VA+ SFT AA +L LS+S++S +S LE +GI+L R R + T G Sbjct: 5 EFTEMRAFLEVAKERSFTRAAAKLGLSRSALSHTVSALEERLGIRLLSRTTRDVAPTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + KPSG +R+ D + + + L FL +PD+ Sbjct: 65 ERFMESIQPHFESITAGISAISALRDKPSGDIRVVCPDDAVELVFRPRLSAFLRDFPDVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++I+DN +I D +RL + + + R + A+P YL+ P Sbjct: 125 VEIIVDNGFTNIVERQFDAGVRLGEAVARDMVAVRIGPDVSYSVVASPDYLERHGPPSIP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 Q+L HN + +P + W D R+ L +++ + + G G+A Sbjct: 185 QDLTGHNCVNL--RLPTSGGLYAWEFERDGREFSVRVEGQLTLSNIAPAIDAALDGIGLA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +V + L +++ D P+F Y Y + +N AF F+ Sbjct: 243 YVPTDLVSQHVERGRLRQVLSD-WCPTFQGYHLYYPSRRNPS--PAFSAFV 290 >gi|167570164|ref|ZP_02363038.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis C6786] Length = 301 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 9/295 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE +G++L R R TLTE+G Sbjct: 5 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTREQTLTEEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H ++ ++E + +++ G LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVKILAEIEQAETLMRDKRGTVGGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDIDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAERGMPAHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ P+ W P+ + N + + + G+GIAL Sbjct: 184 ADLCAHRCIVMGEQ-PR----VEWRFDGPEPVAVEVSAAFLTNDGGAARTFALEGAGIAL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V + L R++ + + + ++ YP +++ F +++ + R Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGAELR 293 >gi|157368892|ref|YP_001476881.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157320656|gb|ABV39753.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 314 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 98/190 (51%), Gaps = 1/190 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + GSF+ AAE+L L ++++S + LE +G++L R R + +T +G+ + Sbjct: 7 MRIFTRIVELGSFSRAAERLQLPRATVSNALKRLEQRLGVRLLIRTTRQVQVTSEGTLYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ LE ++PSGK+RI L + ++ L +F YPD+ + L Sbjct: 67 QRCVQLLGALEEADTLFSHHKLQPSGKVRIDMPHSLAREIVIPALDDFYQRYPDLTLALG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R + + SL+ R++ + A+P YL P SI +L Sbjct: 127 ANDTHVDLLREGVDCVLRAWE-TEDDSLVARRIAMLPQLTCASPGYLAAFGVPQSIDQLQ 185 Query: 188 KHNLITFGDL 197 +H + + L Sbjct: 186 QHQAVGYFSL 195 >gi|313500574|gb|ADR61940.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 316 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD L+ F VAR+ + AA++L + +++SR+IS LE +G LF + G LT Sbjct: 10 ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + L ++ S V SG +R+ T G + L F+ YP Sbjct: 70 AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + ++ I +S AD I L +P + + KL + YA YL + Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDSHTPI 188 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L KH I++ D + E +LA + S + Y + +Q G G Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSE-LLYLANLIPNASAHLRSTSVIAQYTAALQ----GRG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ +P LV ++ + I + + E L+ ++ ++I Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293 >gi|319761568|ref|YP_004125505.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|317116129|gb|ADU98617.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] Length = 308 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 22/295 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD LR+F V R+ S AA ++ + S+I+R++ LE E+G +LF R G LT G Sbjct: 7 NWDNLRLFLAVVRAQSAQEAARRMEVDHSTITRRLHRLEKELGAQLFERTPAGHLLTPAG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQE----SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +L E ++E++ + + E S +G +R+ T G L +L F + Sbjct: 67 QRL----LEHVERMESSMVLVGEDIGGDSHMLTGHVRLGATEGFGSFFLAPHLSYFCDRH 122 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P IQ++L++ + I++S AD A+ + +P Q S + KL + YA+ YL+ Sbjct: 123 PGIQVELLIVPRFINLSQREADLAVNIERP-QRSGQVCSKLTDYRLRLYASRSYLQGQPP 181 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVL 237 +++L H + + + E +L ++ D P + + S + QY + Sbjct: 182 IRRLRDLAAHRFFGYVEELVFSQE-LRYLTSIMPDAP--------MSLRSTSVVAQYNAV 232 Query: 238 --GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A+LP ++ L ++ + T + P + +++A +++ Sbjct: 233 REGRGLAVLPCFMAAQCAELEPVLPHEVDVLRTFWLAAPADRRELARVRALWDYL 287 >gi|218553486|ref|YP_002386399.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|260854191|ref|YP_003228082.1| putative transcriptional regulator, LYSR-type [Escherichia coli O26:H11 str. 11368] gi|260867072|ref|YP_003233474.1| putative transcriptional regulator LYSR-type [Escherichia coli O111:H- str. 11128] gi|300823639|ref|ZP_07103766.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|300921066|ref|ZP_07137450.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|307311713|ref|ZP_07591353.1| transcriptional regulator, LysR family [Escherichia coli W] gi|331676688|ref|ZP_08377384.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] gi|218360254|emb|CAQ97804.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|257752840|dbj|BAI24342.1| putative transcriptional regulator, LYSR-type [Escherichia coli O26:H11 str. 11368] gi|257763428|dbj|BAI34923.1| putative transcriptional regulator LYSR-type [Escherichia coli O111:H- str. 11128] gi|300411917|gb|EFJ95227.1| LysR substrate binding domain protein [Escherichia coli MS 115-1] gi|300523839|gb|EFK44908.1| LysR substrate binding domain protein [Escherichia coli MS 119-7] gi|306908268|gb|EFN38767.1| transcriptional regulator, LysR family [Escherichia coli W] gi|315060185|gb|ADT74512.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|320202296|gb|EFW76867.1| Putative LysR-like transcriptional regulator [Escherichia coli EC4100B] gi|323157213|gb|EFZ43336.1| hypothetical protein ECEPECA14_1004 [Escherichia coli EPECa14] gi|323379258|gb|ADX51526.1| transcriptional regulator, LysR family [Escherichia coli KO11] gi|323947311|gb|EGB43319.1| LysR substrate binding domain-containing protein [Escherichia coli H120] gi|331075377|gb|EGI46675.1| putative transcriptional regulator LYSR-type [Escherichia coli H591] Length = 302 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ D T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|167589844|ref|ZP_02382232.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 324 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 25/297 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V +GSF+ A+++ +S S+++R++S +E +G+ L +R +TLTE GS H Sbjct: 16 MRAFVRVVETGSFSAVAKEMRVSTSTVARKVSAIEEALGVPLLHRSTHSVTLTEAGSIYH 75 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ T + E + +PSG L++ + G+ L + FL YP IQ+ + Sbjct: 76 ERAVTLIADLDDTLRVVAELNARPSGPLKLTAPVAFGRRHLAPLIAPFLAQYPTIQLDVR 135 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D+ D I + +L+ ++L A+P YL C P EL Sbjct: 136 LTDNHNDLVAGGFDLDIHEGENYL-DNLVAQRLSRNDSILCASPAYLDRCGRPAEPHELA 194 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242 HN + + + P+ D W VD + R S L + +S ++ G GIA Sbjct: 195 SHNCLRY--VHPEG--DPRW-ELVD---ADARHSILPAGNLVSDHSELLLDATRAGLGIA 246 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290 ++V+D L +V+ P + +Y Y +++ KL+ R F+ Sbjct: 247 EFEIWLVRD--LLASGQLEVVLPRYRLQNKLTGDFIYMAYLANRRSSAKLRVLREFL 301 >gi|330888402|gb|EGH21063.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 298 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +ET G +L +R R L LT G Sbjct: 8 RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L +L + +L YP + L++ Sbjct: 68 RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + ++I R L A+P YL P S QEL Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F P+ P L N + +++ V G+GI L P + Sbjct: 187 HNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ ++ D + ++ Y + L+ +F+ Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 287 >gi|329295761|ref|ZP_08253097.1| transcriptional regulator [Plautia stali symbiont] Length = 305 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 15/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GSFT AA QL LS SSIS+ ++ LE E+ +K R R L LTE G + Sbjct: 7 MSIFAKVVELGSFTAAARQLQLSVSSISQIVARLEDELQVKRLNRSTRSLGLTEAGKIYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ET+Q+ Q + K P G LRI + + QN+L E L YP + + Sbjct: 67 QGCRRMLA--ETSQVHEQLYAFKNTPIGILRIGCSTAMAQNVLSAMTSEMLHEYPGLSVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+ D+ + D IR+ + +Q S+L R+L + M AA YL P E Sbjct: 125 LMTGIPTPDLIANGLDVVIRVGE-LQDSNLFSRRLGAMPMVVCAAKSYLAQHGTPEKPAE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +D + + + E V R + R N +++++ G GIA +P Sbjct: 184 IDNFSWLEYSVRPDNTFELVAPEGLVTRLTPQGRFV---TNDSQTLIRWLKAGCGIAYVP 240 Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 V D N I D++ P + VY Y E K K++ N++ Sbjct: 241 LMWVIDEINAGEI--DILFPQYHSEPRPVYAVYTEKDKLPLKVQVCINYL 288 >gi|319787805|ref|YP_004147280.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466317|gb|ADV28049.1| transcriptional regulator, LysR family [Pseudoxanthomonas suwonensis 11-1] Length = 302 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/303 (24%), Positives = 134/303 (44%), Gaps = 33/303 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++ F VA +GSFT AA L L+++++++ + LE + ++L R R +TLT GS Sbjct: 5 DAMQAFVRVAETGSFTRAATDLGLARATVTQLVQQLEARLRVRLLDRTTRRVTLTADGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L+ + L + G+LR+ L + ++ L F +P+I++ Sbjct: 65 FLERALRLLADLDDAETGLPGQAAAARGRLRVDMPSPLARLVVVPALPAFHARHPEIELV 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ DC +R + + SL+ R+L + + YAAP YL+ P E Sbjct: 125 LGASDRVVDLMGANVDCVVRGGE-LADGSLVARRLARLALGVYAAPAYLERHGTPAHPGE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI--------------GEPRISCLQVNSYLSI 231 L+ + G F W A+ RP+ PR++ N+Y Sbjct: 184 LEGAAHRSVG---------FLW-ASSGRPLQPVLRRGTEQVQVRARPRLAVDDGNAY--- 230 Query: 232 MQYCVL-GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 Q VL G G+A +P Y+ + LV + D + + + +L+AF Sbjct: 231 -QAAVLAGLGVAWMPRYMADAHVARGELVELFADWRLAPMPLSLAWRPRPQVGARLRAFI 289 Query: 288 NFI 290 +++ Sbjct: 290 DWM 292 >gi|152988323|ref|YP_001348343.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PA7] gi|150963481|gb|ABR85506.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PA7] Length = 312 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 23/292 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F +A SFT AAE L LS+S +S Q+ LE ++GI+L R R +TLT++G Sbjct: 14 NHLYAFVAIAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + +L+ ++++ +PSG+LRI D + + F+ +P +Q++ Sbjct: 74 LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLS 182 ++ D++ D+ D A+R+ P + S L KL A A P YL R+P Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPEYLAGLPPLRQPCD 192 Query: 183 IQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 ++ E H ++ +NW T +R + L N+ L++ + + Sbjct: 193 LERCEWIGHTRLS---------TPWNW--TFERQRERATVQTRGRLLANNTLAVYRLVLD 241 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+G+++LP ++V LV ++ D P +Y YP A +++AF Sbjct: 242 GAGVSVLPSFLVARELARGRLVHLLPDWRLPQGGIYALYPSARYMPVRVRAF 293 >gi|26991352|ref|NP_746777.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24986415|gb|AAN70241.1|AE016663_9 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 316 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD L+ F VAR+ + AA++L + +++SR+IS LE +G LF + G LT Sbjct: 10 ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + L ++ S V SG +R+ T G + L F+ YP Sbjct: 70 AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I + ++ I +S AD I L +P + + KL + YA YL + Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDSHAPI 188 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L KH I++ D + E +LA + S + Y + +Q G G Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSE-LLYLANLIPNASAHLRSTSVIAQYTAALQ----GRG 243 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ +P LV ++ + I + + E L+ ++ ++I Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293 >gi|127514033|ref|YP_001095230.1| LysR family transcriptional regulator [Shewanella loihica PV-4] gi|126639328|gb|ABO24971.1| transcriptional regulator, LysR family [Shewanella loihica PV-4] Length = 293 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 1/182 (0%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA S F+ AA QL LS S +SRQ++ LE +G LF R R ++LT+ G +R Sbjct: 10 FIAVAESNGFSAAARQLGLSTSHVSRQVARLEVRLGCALFARTTRSVSLTQAGQGYYRQC 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + L E+ + ++ SG LR++ + + L +F +P + I++ ++ Sbjct: 70 QNLLVGLRQANEEVTQQQLQLSGTLRVSAAGAFAEQYIAPVLIDFARQHPALTIEMDFNS 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + ++ + D AIR ++ S L+ RKL M A A+P YL P + Q+L H+ Sbjct: 130 RMVNFVEEGIDFAIRF-GALKDSGLVARKLANRDMMAVASPQYLAEFGIPKTPQDLRLHS 188 Query: 191 LI 192 I Sbjct: 189 CI 190 >gi|116052199|ref|YP_788957.1| LysR family transcription regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115587420|gb|ABJ13435.1| possible LysR family transcription regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 309 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 134/288 (46%), Gaps = 10/288 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA +GSF+ AAE+LHL+ S++S+ I+ LE +G++LF R R L LT+ G+ +R Sbjct: 12 VFVCVAEAGSFSAAAERLHLTASAVSKAIARLEDRLGLRLFERTTRRLALTDAGTTFYRT 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S V LE +++ L + G++R+ G+ + + +F + + + Sbjct: 72 CSRVLGDLEESELALHAEHHQTGGRIRLDLPASYGRLHVLPVVLDFARRHALLVPHISFS 131 Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 + ID D +R+ P I +L R L + AAP YL EP ++EL Sbjct: 132 DDFIDPVSQGIDILVRIGGPDIWPETLGHRYLGAQRLVFCAAPAYLAAHGEPRDVEELAA 191 Query: 189 HNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H+ + +G L + ++R + RI+ + ++Q + GI LP Sbjct: 192 HDCVLYGQGDGLTTPWNFPGHQPGELERRVMPTRIA---IGDGEGVVQALLASHGIGQLP 248 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V ++ L ++ + + ++ + + +N K+ A + + Sbjct: 249 TWLVSRHLESGRLREVLPQLASDGLSINLAWQKRRENLPKVGALLDVL 296 >gi|330989338|gb|EGH87441.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 294 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +ET G +L +R R L LT G Sbjct: 4 RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L +L + +L YP + L++ Sbjct: 64 RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 123 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + ++I R L A+P YL P S QEL Sbjct: 124 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 182 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F P+ P L N + +++ V G+GI L P + Sbjct: 183 HNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 238 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ ++ D + ++ Y + L+ +F+ Sbjct: 239 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 283 >gi|323499170|ref|ZP_08104148.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315803|gb|EGA68836.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 299 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 18/288 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE +L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVEMGSFSKVAEINNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + SG ++++ G +L + EF +P + + Sbjct: 64 LTHGAKNVKQATLEAMDAVSGFGENISGHIKMSVPTISGDLILADAVAEFCNTHPGLSVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +P+ ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNAKPVKPED 182 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +HN + + E + N++ V ++ ++ + + G Sbjct: 183 LTQHNCLQYAYQTTGASEWEFKGKEGNYIVRVS--------GSFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA +P +V N LV + +++ +Y YP + K+K Sbjct: 235 GIAYVPRCLVYHDIRNGQLVDLFPELVGKRLGIYAVYPFTRQPPNKVK 282 >gi|209694777|ref|YP_002262705.1| HTH-type transcriptional regulator, LysR family [Aliivibrio salmonicida LFI1238] gi|208008728|emb|CAQ78918.1| HTH-type transcriptional regulator, LysR family [Aliivibrio salmonicida LFI1238] Length = 311 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 19/294 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +FY +A++GSFT AA+Q+ +S S +S+Q+ LE E+ +KL R R LTLT+ G + Sbjct: 7 QMVIFYALAKAGSFTAAAKQMGVSTSHVSKQLGILEAELNVKLVQRTTRSLTLTDAGQQF 66 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++Y + + + +G LR+ + G + + + YPD+Q+++ Sbjct: 67 YLYCEKMYSAMTEASAIMDNERDEVAGILRLGLSQSFGTMHIIPAIDKLRHQYPDLQVEV 126 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ D D + + + + QR L H A+P YL + P Q+L Sbjct: 127 RLFDHRADMLKDGLDLWVTNFEDLPEGYVAQR-LADSHFVLAASPDYLIDKAVPHHPQDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSG 240 +HN +T+ + + NW D G + C++V+ ++ + G G Sbjct: 186 TEHNCLTYQS---RHRDYSNW----DFSKGNEAL-CVKVSGNYCVDLAEAVRDAAISGWG 237 Query: 241 IALLPDYIVKDNPN---LVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A L Y++ + N L++++ D + +Y YP K+ A +F+ Sbjct: 238 VAYLASYLLTNEFNDGKLIQLLPDWKASQKMPIYAVYPSRKHLPRKISAVIDFL 291 >gi|146339421|ref|YP_001204469.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192227|emb|CAL76232.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 321 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA SF AA++L LS + S+ + LE + +L R +R + LTE G Sbjct: 9 IRVFCQVAELKSFAAAADRLSLSPAMASKHVMQLEQRLSTRLLNRTSRRVGLTEAGQVYF 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ + + +++V P G L+++ + L G L + +PD+ + L Sbjct: 69 DQVRPMLDQLDEAEAVVSKATVIPRGTLKVSAPVWFANPLFAGMLAAYHARHPDVVLDLD 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ + D A+R+ LI R L + M A+P YL P ++ +LD Sbjct: 129 LSGRLVNLVEEGFDLALRVSA-TPGDGLIARPLPPVLMQLVASPAYLAAAGRPATLADLD 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGIAL 243 H + + + + V GE + V N L + Q V G G+A+ Sbjct: 188 GHGFLKYAHYPVRTI-------MVPHADGEVALGFRDVLISGNETL-LHQAAVAGLGMAV 239 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP +++ D+ L ++ +++T + YP + K++ F +FI Sbjct: 240 LPRWLMADDLAAGRLEAVLPELLTIKAPLLAVYPSRKYLSAKVRTFIDFI 289 >gi|146307034|ref|YP_001187499.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575235|gb|ABP84767.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 290 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 120/269 (44%), Gaps = 13/269 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V ++ SF AAE L + S++SR+I+ LE +G++L R R + LTE G Sbjct: 5 NDMALFVEVIKANSFRGAAEALGIPNSTVSRRIAELERRIGLRLLNRTTRRIELTEGGRL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + E+ E PSG +R++ D G L L EF YP I+ Sbjct: 65 YFERCRRIVDEARLAHEEISELVDNPSGLIRLSMPTDFGVVYLAPLLAEFAERYPQIRFD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L K +D+ + D IR+ + S LI R L T+ +A+P YL P S Sbjct: 125 LDLTPKRLDLIREPVDLVIRI-GTLPDSQLIARPLGTLRRSLFASPAYLARYGMPASPAA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H + M D W L + I +N+ + + +LG G+A+L Sbjct: 184 LLQHQCLR--------MLDAPWVLHDTQQKISLAVQGRFLLNNIGMLRRLALLGQGVAML 235 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVY 270 D ++ ++ L R++ D VY Sbjct: 236 VDEMIGEDLAQGRLHRVLPDWKAEDLPVY 264 >gi|330974141|gb|EGH74207.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 304 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +E+ G +L +R R L LT G Sbjct: 16 RVFIAINDRGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLL 75 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L +L + +L YP L++ Sbjct: 76 RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSADLLI 135 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + ++I R L AAP YL P QEL Sbjct: 136 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGQCASVVCAAPAYLAVHGTPSRPQELSA 194 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F P+ P L N + +++ V G+GI+L P + Sbjct: 195 HNCLTY-SYFGKSLWEFT---RQQMPLSVPVGGNLSANDSVVLLEAAVAGAGISLQPVHS 250 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ +M + + ++ Y + L+ F +F+ Sbjct: 251 AAPLIASGKLIALMPEYQPRALGIHAIYTSRHHQSATLRTFLDFL 295 >gi|157371417|ref|YP_001479406.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323181|gb|ABV42278.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 307 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 11/296 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++ F VAR SF A ++L LS S++S I LE + ++LF R R + LT Sbjct: 1 MQPNFSDFASFIAVARYKSFREAGDELGLSPSAMSHSIKQLEQRLKVRLFNRTTRSVALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G L V+ + T E+ P G L+I T+ + L + F YP Sbjct: 61 EAGLTLFERLRPVFDEFNTILDEMNCFRDAPMGTLKINTSRLASRLFLLPIIAGFSRKYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI++++ D+K +DI D IRL ++ + I + A P YLK+ P Sbjct: 121 DIKVEITTDDKLVDIVRQEFDAGIRLNNRVEKDMITVPIGPKIKLVVVATPEYLKHHPAP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 EL H + F + +L + P G+ ++ + ++ S ++ + Sbjct: 181 THPCELIHHQSVIF-----RFQSGRPYLWEFENPSGKLEVAPVGNIMLDDMDSALEAVLC 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+G+ L VK+ + L ++++D + ++ YP +G L+AF +++ Sbjct: 236 GAGLGYLYYEQVKEHLQSGKLAKVLDDWLPERPSLQLYYPNRQYMSGPLRAFIDYM 291 >gi|187479575|ref|YP_787600.1| LysR family transcriptional regulator [Bordetella avium 197N] gi|115424162|emb|CAJ50715.1| LysR-family transcriptional regulator [Bordetella avium 197N] Length = 296 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 29/304 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + +F VA+ +F+HAAE L++ S++SR++S LE +G+KL R R + LT Sbjct: 1 MDIPLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERNIGMKLLNRSTRRIDLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + +LQ+ + P G+L+I+ L Q L ++ F YP Sbjct: 61 EAGMVYFERCRHIVEEARVAHEQLQDMAAHPKGRLKISMPTSLAQLFLPVVIRNFRDQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 DI+ L + ID + D +R +P SSLI +++V + YA+ YL E Sbjct: 121 DIECDFDLSLRPIDPISNPFDLVLRFGAQP--DSSLIAKQIVLMAQQLYASRAYLAQYGE 178 Query: 180 PLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P +L H + T G+ M L + D ++ +QVN L+ +L Sbjct: 179 PRVPSDLGHHECLRTTLGEPASYWM-----LHSGD------KVERVQVNGRLAANNLGML 227 Query: 238 GS----GIALLPDYIVK------DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAF 286 G G+ + P + LVR++ + +TP F + + K +AF Sbjct: 228 GRMAAHGMGITPLLVFDAMEQAVSESGLVRVLPEWSLTP--VPLFALLPSRRIPAKTRAF 285 Query: 287 RNFI 290 +FI Sbjct: 286 LDFI 289 >gi|15964529|ref|NP_384882.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307308477|ref|ZP_07588181.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307319040|ref|ZP_07598471.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|15073706|emb|CAC45348.1| Probable transcription regulator [Sinorhizobium meliloti 1021] gi|306895454|gb|EFN26209.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306901080|gb|EFN31688.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 298 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 9/237 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V +GS + A L S + IS++I LE +G +L R R ++LTE G + Sbjct: 7 LEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGARLLQRTTRQISLTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + S + G LRI+ G+ + +L F+ +PD+++ ++ Sbjct: 67 DRVLGILAGLEEAEAYASGRSSQVQGTLRISAPTSFGRMHIAPHLTGFMKDHPDLKLHIV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + DI + D AIR+ + + SSL+ RKL + AAP Y+ P I EL Sbjct: 127 LTDDFTDIVAEGFDLAIRIGE-LSDSSLVARKLAPVRRLLCAAPSYVARHGAPTEIGELA 185 Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 KH +P D NW L D + L NS I + + G+GIAL Sbjct: 186 KHI------CLPAHNND-NWKLEGPDGSLSYRPEGPLVTNSSEIIREAVIAGAGIAL 235 >gi|221196142|ref|ZP_03569189.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2M] gi|221202816|ref|ZP_03575835.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2] gi|221176750|gb|EEE09178.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2] gi|221182696|gb|EEE15096.1| LysR substrate binding domain protein [Burkholderia multivorans CGD2M] Length = 303 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AAEQL L + ++S + LE + ++L R R + LT +G+ + Sbjct: 7 MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTAEGTTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + +E+ P G +R+ + + L +F YPD+++ + Sbjct: 67 ERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPDLRVVVS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ D DCA+R+ + +SL+ R++ + A+ Y P + EL Sbjct: 127 TTDRFVDLVADGIDCAVRVGM-LSDTSLVARRIGEMAQLNCASRDYAARHGLPRTPDELP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W T D G+ S + VNS + + CV G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDWEYT-DMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLGMIQ 242 Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + ++ D LV ++ + P V +P +++ F +++ Sbjct: 243 APRDGLEPLLADG-TLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWL 292 >gi|241203794|ref|YP_002974890.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857684|gb|ACS55351.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 299 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 9/294 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + V V GS + A+ L +++SR++S LE + +L R R +TLTE G Sbjct: 5 DAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKVTLTEAGRS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E+ +++E + P G+L + I G+ + + +FL YPDI ++ Sbjct: 65 YVEAAREILNRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPDINLR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L ++ ++ D+ D A+R+ + S+LI +L I YA+P YL P + Sbjct: 125 LMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLTRHALPRHPGD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+ +TF + +W R + P S L VN+ + + V G GI + Sbjct: 184 LAGHDCVTFEGM----ASMLSWTFIEGRHDLTVPIRSRLAVNTAEAAVDAAVAGLGITRV 239 Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y LV ++ D P V+ YP KL+A +F + R Sbjct: 240 LSYQAARAEMAGLLVPLLADFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 293 >gi|254254929|ref|ZP_04948246.1| Transcriptional regulator [Burkholderia dolosa AUO158] gi|124899574|gb|EAY71417.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 297 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 128/296 (43%), Gaps = 23/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 12 NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S+V L + + VK L I+TT L L +F +PD ++ Sbjct: 72 YF---SDVQRALLAIA-DATDRLVKRRAALTISTTPSFASKWLIPRLAQFTDAHPDYDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIR KP L+ L + + A +P L P ++ Sbjct: 128 VIADPQLATFRHDGVDLAIRYGKPPFGKHLVAHPLFPLDVCAVCSPALLAAPASPRALAG 187 Query: 186 L----DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L D H DL P ++A + P+ L+ N + V G GI Sbjct: 188 LVLLHDAH------DLWPA------FVAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 AL D +V+ + L + E S Y YP ++ + A R++I +A Sbjct: 236 ALATDPLVERDIAAGRLCKPFEFAFPLSVGFYLVYPAERRDDDAIAAMRDWIVREA 291 >gi|327478897|gb|AEA82207.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 326 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 16/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F + +GS + AA QL +Q ++SR++ LE +G++L R + LT G + Sbjct: 13 DLLRTFIRIVDAGSLSAAATQLGTTQPTVSRRLQALERSLGLQLLNRSTHRMQLTGDGER 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +V + EL + P G LR+ GQN L L ++L YP++ ++ Sbjct: 73 CYGFARQVLESWGEMEAELLGARDDPRGTLRVQVPHAFGQNQLVAPLGKYLSRYPNVSVE 132 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +L ++ + + + DCAI++ I+ S++ +L + P L P + ++ Sbjct: 133 WVLHDRSPNFTAEGIDCAIQVGA-IEDPSVVAIRLGEVPRIVVTHPALLGEGPLPTTTEQ 191 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L + + +++ C D R +PR+S +S ++ + G G Sbjct: 192 LQRLPWLALRTYYTDEVVLTCQAD----GRSHRFAIQPRMS---TDSLYALRSAALAGLG 244 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++V + LV+++ VY YP A KL+ F I Sbjct: 245 ACVSSAWVVAQDIEEGRLVQLVPQWRAAPLPVYLIYPHARSYPAKLRLFAEII 297 >gi|198284575|ref|YP_002220896.1| LysR family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665299|ref|YP_002427245.1| transcriptional regulator, LysR family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249096|gb|ACH84689.1| transcriptional regulator, LysR family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517512|gb|ACK78098.1| transcriptional regulator, LysR family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 307 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 134/283 (47%), Gaps = 8/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A++G+F+ A +L S + +S+++ LE ++ ++LF R R + LT++G++ + Sbjct: 9 LTIFVHAAKAGNFSTAGRELGFSAAVVSKRLQRLEDQLSVRLFNRSTRKVGLTDEGAEYY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V LE + + S +P G LR+ G+ + + FL +PD+ + L Sbjct: 69 DYCIRVLSDLEEAESLITVGSRQPKGTLRVTVPAAFGRLHIAPLVPVFLRRHPDLHLCLH 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI + D A+R+ + ++ S+L+ R L A P Y+ P +L Sbjct: 129 LSDNVVDIIEERYDVAVRIGE-MKDSNLVARNLCVDKRLVVATPSYIAKYGAPEQPDDLI 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 KHN + F + F+ + R+S + N+ ++ + + GIAL P Sbjct: 188 KHNALLFAHSTTSNLWRFSDKFGKQHSV---RVSGNFETNNCDALREAILADIGIALRPT 244 Query: 247 Y-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + I +D + ++ ++ D + SF V YP K++ F Sbjct: 245 WDIWRDILSGRMIALLRDYVPYSFDVKVVYPSRRHLPSKVRVF 287 >gi|167584369|ref|ZP_02376757.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 290 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 15/287 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR SFT AAEQL ++Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 10 LQIFSTVARHRSFTRAAEQLCITQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +E + ++E ++L + L++ T + + + F +PD+ +Q+ Sbjct: 70 PVVNESFARIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124 Query: 128 LD-NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQE 185 D+D + + D AI + + + L + AP + PL+ I + Sbjct: 125 TAWQHDVDFATEPFDAAI-VYGTSPGADVCALPLFDERLTPVCAPGLRQTA--PLAEIGD 181 Query: 186 LDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H L+ T + D + TVD G P L + + ++ + V + L Sbjct: 182 LARHTLLHPTRDHRDWRAWLDHAGVRTVDADRG-PSFDTLDLATNAAMEGFGVAIGDVTL 240 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + L R + V+ +F YPE+ + K++AF ++I Sbjct: 241 VDDDVSAR--RLERPFDVVLETGARYFFVYPESAGSQQKIRAFSDWI 285 >gi|163742283|ref|ZP_02149671.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] gi|161384613|gb|EDQ08994.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis 2.10] Length = 324 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 3/208 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ D +R F V GS + A L +S + S +IS LE +G++LF R R LT T Sbjct: 1 MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG + V ++ + ++ + P G L +A + LG+ LL EFL YP Sbjct: 60 EQGRAFYDGAVAVLDAVDVAEAKVMHLTDTPRGTLFVAAPLGLGRRLLAPQTPEFLATYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I ++L L ++ +D++ + D A L +P + S+L RK+ AAP Y+ P Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPDYVARRGMP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL 208 L + + P E F WL Sbjct: 179 EDGAALLREDHDCLNLRYPGASE-FQWL 205 >gi|84683452|ref|ZP_01011355.1| transcriptional regulator, LysR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84668195|gb|EAQ14662.1| transcriptional regulator, LysR family protein [Rhodobacterales bacterium HTCC2654] Length = 288 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 9/293 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DWD LR + V R G+ + AA+ L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 3 DWDGLRTAFEVVRHGTVSGAAQALGVHHATVIRHIDALEARLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L G+L + T + L+ L EF +P + Sbjct: 63 EDLARVAQATDDQFAQLSARLSGQGSAVQGELVVTTLASFTRRLMP-VLAEFQAQHPSVT 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + A AIR P + + ++L T+ YAAP Y++ P Sbjct: 122 LVYRTGPRIFRLEYGEAHVAIRAGSPPKELDNVVQELATLKTALYAAPSYVERRGMPTEA 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H+ + D + W++ I R+ ++ LS+ + G G+ Sbjct: 182 -DLVTHDFVGADDEQTRA-PGLRWMSA---NIPRDRVVFRAIDD-LSLYEALRAGVGLGF 235 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 P + + P+LV+++ S ++ L T K++A + +D Sbjct: 236 SP--VAEAGPDLVQVLPPRDEWSAKLWLVTHVDLHRTAKVQALTQHLKASLKD 286 >gi|325277608|ref|ZP_08143191.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097260|gb|EGB95523.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 16/286 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F + F+ AA +L ++ SS++R + LE+ +G L R R ++LTE G++ + Sbjct: 7 MKMFVATVDAQGFSAAARRLGVAASSVTRLVDALESALGATLLNRSTRQVSLTEAGARYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ L+ + + +P G LR+ ++ G+ ++ +L FL +P +++ + Sbjct: 67 QRARGIFEALDEADASISDRGEEPVGVLRLCLPVEFGRRVIAPHLGPFLARHPALELDID 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ D +IRL P S ++ R L A+P YL L ++L Sbjct: 127 LSDRIDDLLDGRYDLSIRLGDPAPSDEMVCRPLGRFQRWLVASPGYLAERGPLLHPRQLL 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246 +H + F + W T + E +S ++ +++ L GSGIALL D Sbjct: 187 EHPCLRF----RYGQKARPWRLTCGQESLELDVSGPLRSANADMLRETALAGSGIALLAD 242 Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 ++V+++ R+ +PE N G N ++L Sbjct: 243 WLVREDVEGGRLQR-----------LFPEWQANPGTANDCINALYL 277 >gi|239501130|ref|ZP_04660440.1| LysR family transcriptional regulator [Acinetobacter baumannii AB900] Length = 298 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 103/193 (53%), Gaps = 11/193 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD + F VV GSF+ AA +L ++Q ++ +I LE ++G LF R GL TE Sbjct: 7 WDDQKFFLVVFEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLKPTE--- 63 Query: 65 KLHRVTSEVYHK-LETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLLY 119 H + EV + ++ ++ P +G +R++ + LG +L L +F LLY Sbjct: 64 --HALALEVPARAMQRASDYFMRTASAPLNVIAGSVRVSVSDFLGTMVLPQLLSKFRLLY 121 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P++ I+L L+N ++ AD AIR+ P+Q +L+ +K+ + + YA Y++ Sbjct: 122 PEVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKGN 180 Query: 180 PLSIQELDKHNLI 192 P +++L +H+LI Sbjct: 181 PTCLEDLRQHDLI 193 >gi|121592772|ref|YP_984668.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120604852|gb|ABM40592.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 312 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 28/289 (9%) Query: 6 DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F VA GS T AA+ ++ + + R++ LE +G+KL R R ++LT + Sbjct: 2 DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRISLTHE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + VK +G LR+ G+ + + F L+P++ Sbjct: 62 GSAFLEDCQRLLSDVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFHDLHPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L L ++ +D++ + DCA+R+ + SSL+ ++ A P YL+ P Sbjct: 122 TLSLNLSDRVVDLAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPTH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-------------RPIGEPRISCLQVNSYL 229 EL +H+ +T L + W V +P G S QV Sbjct: 181 PGELAQHDCLT---LSSDASQTRGWAFRVPVAGGGGATEVVHFKPGGPLDCSDGQV---- 233 Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 + +C+ G GIA + V+ LV ++E+ P +Y +P+ Sbjct: 234 -LHDWCLGGWGIAWRSTWEVESEIAAGRLVAVLEEFAAPPNGIYVVFPQ 281 >gi|22124100|ref|NP_667523.1| putative DNA-binding transcriptional regulator [Yersinia pestis KIM 10] gi|108809687|ref|YP_653603.1| putative DNA-binding transcriptional regulator [Yersinia pestis Antiqua] gi|108813649|ref|YP_649416.1| putative DNA-binding transcriptional regulator [Yersinia pestis Nepal516] gi|145597606|ref|YP_001161682.1| putative DNA-binding transcriptional regulator [Yersinia pestis Pestoides F] gi|153997380|ref|ZP_02022480.1| transcriptional regulator, LysR family [Yersinia pestis CA88-4125] gi|162419064|ref|YP_001605721.1| putative DNA-binding transcriptional regulator [Yersinia pestis Angola] gi|165928291|ref|ZP_02224123.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165937571|ref|ZP_02226134.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis str. IP275] gi|166011359|ref|ZP_02232257.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166212210|ref|ZP_02238245.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|167400511|ref|ZP_02306020.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420766|ref|ZP_02312519.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426753|ref|ZP_02318506.1| transcriptional activator AaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466813|ref|ZP_02331517.1| transcriptional activator AaeR [Yersinia pestis FV-1] gi|218930692|ref|YP_002348567.1| putative DNA-binding transcriptional regulator [Yersinia pestis CO92] gi|229836833|ref|ZP_04456998.1| transcriptional regulator, LysR family [Yersinia pestis Pestoides A] gi|229839268|ref|ZP_04459427.1| transcriptional regulator, LysR family [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899831|ref|ZP_04514972.1| transcriptional regulator, LysR family [Yersinia pestis biovar Orientalis str. India 195] gi|229904143|ref|ZP_04519254.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516] gi|270488577|ref|ZP_06205651.1| LysR substrate binding domain protein [Yersinia pestis KIM D27] gi|294505276|ref|YP_003569338.1| probable lysR-family transcriptional regulatory protein [Yersinia pestis Z176003] gi|21956850|gb|AAM83774.1|AE013617_10 putative transcriptional regulator LYSR-type [Yersinia pestis KIM 10] gi|108777297|gb|ABG19816.1| lysR-family transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108781600|gb|ABG15658.1| lysR-family transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115349303|emb|CAL22271.1| probable lysR-family transcriptional regulatory protein [Yersinia pestis CO92] gi|145209302|gb|ABP38709.1| lysR-family transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149289017|gb|EDM39097.1| transcriptional regulator, LysR family [Yersinia pestis CA88-4125] gi|162351879|gb|ABX85827.1| transcriptional activator AaeR [Yersinia pestis Angola] gi|165914676|gb|EDR33290.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis str. IP275] gi|165919679|gb|EDR37012.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165989743|gb|EDR42044.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166206956|gb|EDR51436.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|166961572|gb|EDR57593.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049879|gb|EDR61287.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054280|gb|EDR64101.1| transcriptional activator AaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678261|gb|EEO74366.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516] gi|229687323|gb|EEO79398.1| transcriptional regulator, LysR family [Yersinia pestis biovar Orientalis str. India 195] gi|229695634|gb|EEO85681.1| transcriptional regulator, LysR family [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705776|gb|EEO91785.1| transcriptional regulator, LysR family [Yersinia pestis Pestoides A] gi|262363339|gb|ACY60060.1| probable lysR-family transcriptional regulatory protein [Yersinia pestis D106004] gi|262367283|gb|ACY63840.1| probable lysR-family transcriptional regulatory protein [Yersinia pestis D182038] gi|270337081|gb|EFA47858.1| LysR substrate binding domain protein [Yersinia pestis KIM D27] gi|294355735|gb|ADE66076.1| probable lysR-family transcriptional regulatory protein [Yersinia pestis Z176003] gi|320017149|gb|ADW00721.1| transcriptional regulator, LysR family [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA +L S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L + L YP + + L Sbjct: 66 YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q+S L R+L + M AA YL P Sbjct: 126 VAGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYTP 240 >gi|187918980|ref|YP_001888011.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717418|gb|ACD18641.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 316 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 27/264 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + F +V RSGS T A +S++++SRQ+ LE E+G+ LF R ARG++ T Sbjct: 1 MQLDMRLVMAFSLVMRSGSLTQAEAISGVSKATLSRQLQVLEEELGVTLFNRRARGMSPT 60 Query: 61 EQGSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 E H ++ ++V +LE + +LQE G+L I + K F+ Sbjct: 61 EAARAFHTHCEQILADVSGRLEVAREQLQELGSGIGGELSIKADSEFSTTFAAHVTKLFM 120 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCA--------IRLRKPIQSSSLIQRKLVTIHMHAY 168 +P++++ L D++ DY CA I P L+ + L I Y Sbjct: 121 ARHPNVKLNL-------DVA-DYPGCAKAEEIDGYICAELP-DIPDLVGKLLGQISCGLY 171 Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--N 226 A+P YLK P++ +L H+ I +I + + L + +P + V N Sbjct: 172 ASPAYLKQKGTPVTPMDLTCHDSI----VIRSTSGNKDTLMLYSQGGSQPYLPKANVTTN 227 Query: 227 SYLSIMQYCVLGSGIALLPDYIVK 250 + + +C+ G GIALLPD+ V+ Sbjct: 228 DHWIMKTFCIDGFGIALLPDFFVQ 251 >gi|170722380|ref|YP_001750068.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169760383|gb|ACA73699.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 298 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 142/296 (47%), Gaps = 22/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +++F V GS+T AAE L++ + ++S+ I LE E+G++L +R R + T G + Sbjct: 5 EAMQMFVAVVEHGSYTKAAEALNVHRPALSKLIQNLEHELGVQLLHRTTRRVNTTPAGDE 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ +L T ++ + P GKLRI LGQ ++ L E + YP ++I Sbjct: 65 FYERSLKLLAELADT-LDWFSPARPPRGKLRIDMQTVLGQAVIIPRLPELMDRYPGLEIS 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + D+ DC++RL + SSL+ +++ + + AAP Y++ P ++ + Sbjct: 124 LATSDNLNDLIAQGIDCSVRLGD-LDDSSLVAKRIGEVALVTCAAPAYVQKYGLPGTLDD 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLGSGI 241 L H + F ++ + + W R G ++ +++ S + + C +GI Sbjct: 183 LQAHLAVNF--MVEQRRQIMPW-----RFRGNGKMISVKMRSAIVVDNAGALLCCALAGI 235 Query: 242 AL-------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L YI D+ LV ++ DV TV +P+ + ++ F ++ Sbjct: 236 GMVQGLRPALQRYI--DSGRLVEVLPDVPVEPKTVSVLFPDRRHLSPNVRVFVEWV 289 >gi|86750879|ref|YP_487375.1| LysR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573907|gb|ABD08464.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris HaA2] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 132/298 (44%), Gaps = 15/298 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + V V +GS + A +LH ++ISR++ LE +G++L R +RGLTLTE+G Sbjct: 4 FEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVRRTSRGLTLTEEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +LET + + G L + + G+ L +FL P+I + Sbjct: 64 AFVAASRRILEELETAERQAAGDYGALRGALHVTAPVAFGERHLLPIALDFLKQQPEINL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L ++ + ++ D A+R+ + S+LI ++ T+ A+P YL P Sbjct: 124 RLTLADQQVSLADAQIDVALRIGH-LADSALIGTRVGTVRRVLCASPDYLARRGVPRRPD 182 Query: 185 ELDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L H+ I+F + D A RP L VN+ + +Q + G G Sbjct: 183 DLAGHDGISFQGFATAPEWRYRRDSAAFAVDPRP-------KLAVNTTEAAIQSALAGVG 235 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 I + Y V D L ++ D V + A+ K+++F ++ + R Sbjct: 236 IIRVLSYQVSDQLRAGQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLR 293 >gi|15596509|ref|NP_250003.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100763|ref|ZP_01364681.1| hypothetical protein PaerPA_01001791 [Pseudomonas aeruginosa PACS2] gi|218892584|ref|YP_002441453.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234434|ref|ZP_04927757.1| hypothetical protein PACG_00283 [Pseudomonas aeruginosa C3719] gi|254239685|ref|ZP_04933007.1| hypothetical protein PA2G_00306 [Pseudomonas aeruginosa 2192] gi|9947249|gb|AAG04701.1|AE004560_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126166365|gb|EAZ51876.1| hypothetical protein PACG_00283 [Pseudomonas aeruginosa C3719] gi|126193063|gb|EAZ57126.1| hypothetical protein PA2G_00306 [Pseudomonas aeruginosa 2192] gi|218772812|emb|CAW28597.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 303 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 14/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ F V GS + AA+ L +++ +S + LE E+G+ L R R + LT+ G + Sbjct: 5 DRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V + + + + G LR+ TT + G L L+ F L+P +Q+Q Sbjct: 65 FYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + D+ + D AIRL + ++ S+ +L + + A A+P L EP Sbjct: 125 LSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDL 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239 L G + + W V P G PR L ++ ++ + + G Sbjct: 184 ESLERLQNLGH--SRLADSLPW--QVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LPD++V+ + L R++ D P V+ YP K++AF +F+ Sbjct: 240 GIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFL 293 >gi|269960280|ref|ZP_06174654.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3] gi|269834891|gb|EEZ88976.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3] Length = 336 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 95/189 (50%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 32 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 91 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ +YP++ I+ Sbjct: 92 FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDVYPNVSIK 151 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ A+P Y+ N ++ Sbjct: 152 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGANERILCASPEYVANNPVLTKPED 211 Query: 186 LDKHNLITF 194 L++HN + + Sbjct: 212 LNQHNCLCY 220 >gi|206562326|ref|YP_002233089.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198038366|emb|CAR54323.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 309 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%) Query: 23 AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 AA QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ Sbjct: 22 AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 +++E P+G+LRI + L F YP IQ+ +I++++ +D + D Sbjct: 82 QMRELRATPTGRLRIQMLPGFALDHFGKPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDI 141 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202 A ++ PI S SLI+R+L T+ AAP Y+ P ++L +H + + Sbjct: 142 AFQIFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN- 199 Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258 W T + E + ++ NS + +Y + G G+ LP + D LV I Sbjct: 200 ---RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPI 256 Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + YP + K+KA F+ Sbjct: 257 LTDYQLAPLSFAAVYPATQRQALKVKALVEFL 288 >gi|238763049|ref|ZP_04624016.1| transcriptional regulator [Yersinia kristensenii ATCC 33638] gi|238698807|gb|EEP91557.1| transcriptional regulator [Yersinia kristensenii ATCC 33638] Length = 310 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 12/297 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +GSF+ A QL +S S+ISR +S LE + +L R R L L+E G ++ Sbjct: 12 EMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEEV 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + + + +P G +RI+ +G+ ++ ++ EFL Y I ++L Sbjct: 72 FKRCNAMLCAANSVMEVSGQYNQEPEGLIRISVPKAVGRFVIHPHIFEFLRRYSKIDVEL 131 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ D D AIR+ S +I R+L+ I A P YL PL +L Sbjct: 132 RLDDRYVDLIDDNVDLAIRITDQ-PPSGMIGRQLMNIEHLLCATPEYLAAHGVPLHPHDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALLP 245 +H+ I G+ F + R + L +++Q+ +GS LP Sbjct: 191 VQHSCIYLGETPGDARWKFRQGTKTVTVAAKGRYAANHTGVRLDAVLQHMGIGS----LP 246 Query: 246 DYIVKDNPN---LVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + + +V+++ D + + S ++ YP KL+ F ++I + RD Sbjct: 247 YFTARTALQQGLVVQVLPDWRFISSYSGGLWLLYPPTRYLPPKLRVFIDYIVGRLRD 303 >gi|186471442|ref|YP_001862760.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197751|gb|ACC75714.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 308 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 13/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA+ SF AA +L ++ S+IS+ I LE +G LF R R + LTE G + Sbjct: 13 DGVEAFLTVAQHRSFRRAAAELGVTASAISQAIRVLEARIGAALFIRTTRSVGLTEAGER 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + +P+G LR++ + LL+ + F YP+++++ Sbjct: 73 FLSRAKPAFEELVAASEVARGLGQRPAGLLRLSVPRAVVPVLLEPLIASFCQAYPEVEVE 132 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + K IDI+ + D IRL + + + + +H+ +P Y P + Sbjct: 133 IDATEKLIDIAAEGFDAGIRLGQFVAADMVAVALTPPLHLVVVGSPDYFATRGRPQHPDD 192 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H + + G L P + ++ + P I+ N + +++ V G G+ Sbjct: 193 LRQHACLRWRRSGGALAPWSFNENG--EAIEIAVSGPFIA----NDFPTMLGAAVEGVGL 246 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 A LP I ++ L++++E V+ YP+ + KL+AF Sbjct: 247 AQLPGPIAREALRAKKLLQVLEPFAPVVPGVFLYYPDRRQIMPKLRAF 294 >gi|297579783|ref|ZP_06941710.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535429|gb|EFH74263.1| transcriptional regulator [Vibrio cholerae RC385] Length = 200 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 1/194 (0%) Query: 4 DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW + + V GSF AA +L+ + S++S++I LE +G++L R R +T TE Sbjct: 2 DWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ ++ ++ E + + P+G LRI T+ +G L L EFL YPDI Sbjct: 62 GALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++QLI + R + + S S L YA+P YL P + Sbjct: 122 RVQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVPQT 181 Query: 183 IQELDKHNLITFGD 196 +QEL +HN++ +G Sbjct: 182 LQELTEHNVLCWGS 195 >gi|317404306|gb|EFV84734.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 306 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 135/298 (45%), Gaps = 25/298 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +++VF +A SF+ AAE L + +++++ I +E +G +L R R + LT G Sbjct: 4 FQEMQVFVRIAERRSFSKAAEDLRIPRATVTNLIKRMEKRLGARLLERTTRQVRLTHDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + LE ++ P G LR+ L + + L FL YPD+ + Sbjct: 64 AYYRRCVRLLADLEEADGAFLNTA--PKGLLRVNMQGTLARVFVMPALPGFLERYPDLVL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L D++ +D+ + DC +R +Q SSL+ R++ + A+P YL EP ++ Sbjct: 122 HLGEDDRLVDLVREGVDCVLRA-GTLQDSSLVGRQIALMPQVTVASPAYLARYGEPATVD 180 Query: 185 ELDKHNLITF-----GDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +L+ H + + G +P ++ N LA RP S + VN + Sbjct: 181 DLEGHRAVDYVSSSTGRSVPLDFMVDGRNVLA---RP-----GSVVSVNGAELYASAALA 232 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPS-----FTVYFCYPEALKNTGKLKAFRNFI 290 G G+ +P Y V D+ R+ V+ P V YP+ + + +++ F ++ Sbjct: 233 GLGLIQVPRYRVADDLAAGRL--KVVLPGAPPAPMPVSVLYPQNRQVSARVRVFSQWL 288 >gi|168232288|ref|ZP_02657346.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472640|ref|ZP_03078624.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194459004|gb|EDX47843.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333397|gb|EDZ20161.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 321 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 126/259 (48%), Gaps = 10/259 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR+G F AA +L LS S IS++I+ LE + +LF+R+ R + LT +G Sbjct: 21 EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +++ L +G + I + G + L F++ YPDI ++ Sbjct: 81 ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D IR+ I + I R+L T +P YL+ +P S+ Sbjct: 141 LTLTDREVDLVEEGVDIEIRVGDDI-NELYIARQLATNRRILCTSPEYLERHGKPESVSA 199 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 L +H+ + +I + F NW+ T + R++ NS ++ + + G GI L Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255 Query: 244 LPDYIVK---DNPNLVRIM 259 ++ V + LVR++ Sbjct: 256 RSEWDVAQYIERGELVRVL 274 >gi|303250394|ref|ZP_07336592.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252252|ref|ZP_07534149.1| hypothetical protein appser6_7700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650720|gb|EFL80878.1| putative HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860174|gb|EFM92190.1| hypothetical protein appser6_7700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 298 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/288 (22%), Positives = 139/288 (48%), Gaps = 10/288 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+ +S + S+ I+ LE + ++L +R R +T TE G Sbjct: 5 NAINLFCRVIETQSFTQAAQLEQVSLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++L+ + + + GK+ I+ +D G + L +F+ YP+IQ+ Sbjct: 65 YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D +R+ ++ SS++ +++ + A+P YL P ++++ Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GTLEDSSIVAKRIARSELVLIASPDYLAKQGTPENLEQ 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + + + + + ++ + +P + N Y +++Q G GI LP Sbjct: 184 LTEHTCLIYEN-----HQQWQFMNGEQKVKIKPNAHVISNNGY-ALLQMTKAGQGIVNLP 237 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++VK+ NLV I+ S + YP + K+K F F+ Sbjct: 238 LFLVKEEISAGNLVEILPQYKQHSIDISVLYPHRRYLSPKVKVFIEFL 285 >gi|262276133|ref|ZP_06053942.1| transcriptional regulator LysR family [Grimontia hollisae CIP 101886] gi|262219941|gb|EEY71257.1| transcriptional regulator LysR family [Grimontia hollisae CIP 101886] Length = 299 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 8/273 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AAEQ +L+ S +S++++ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVELGSFSKAAEQNNLTNSVVSKRVARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + + +G ++++ G LL + EF P + + Sbjct: 64 LLHGAKNVKQATQEAVNSVIGFGENITGHIKMSVPTISGDLLLADAVAEFCSQNPGLTVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+NK +D+ D IR ++ SSLI R + A+P YL +P + + Sbjct: 124 MSLNNKFVDLIEGGYDLVIRTGY-LEDSSLIARHFLDSQWVVCASPEYLSRYGKPATPEA 182 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244 L HN + + E W + R+S ++ ++ + + G GIA + Sbjct: 183 LVDHNCLQYAYQTTGASE---WEFKASKGNYIVRVSGSFSTDNATALRKAALGGYGIAYV 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 P +V + NL+ I + + +Y YP Sbjct: 240 PRCLVYHDLLEGNLIDIFPEQVGKKLGIYAVYP 272 >gi|213156968|ref|YP_002319013.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|301346693|ref|ZP_07227434.1| transcriptional regulator, LysR family protein [Acinetobacter baumannii AB056] gi|301595406|ref|ZP_07240414.1| transcriptional regulator, LysR family protein [Acinetobacter baumannii AB059] gi|213056128|gb|ACJ41030.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] Length = 306 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 140/299 (46%), Gaps = 33/299 (11%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L++F + GSF+ AA+QL++ +++ S I LE+ + +L R R + + G Sbjct: 4 FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +++ +L+ + L+ +P G LR+ + ++ N+ +F LYPDI++ Sbjct: 64 AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPDIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R + + S+LI R L+ + A+P YL P + Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLIDMPQVICASPDYLNKHGTPEQPE 182 Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230 +L H + F ++ +DF +W+A D N LS Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDFFLKSWIAVNDAE-----------NYVLS 231 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +Q G+G+ +P Y V + N LV+++ + P +V YP+ + + +++ F Sbjct: 232 ALQ----GAGLIQVPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVF 286 >gi|167588085|ref|ZP_02380473.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 279 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 9/260 (3%) Query: 41 LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIAT 99 LE + +LF R R ++LT +G + L +++E S PSG LRI + Sbjct: 4 LEDRLDTRLFQRTTRSMSLTREGELFYENCRPGIDHLAQALDDMRELRSGPPSGHLRIGS 63 Query: 100 TIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK 159 T G+ ++ L++F L YPDI ++L+L+++ +D S D D A R + ++ S+++ R+ Sbjct: 64 TPGFGRKIIAPLLRDFHLQYPDITLELLLNDRPVDFSADRIDVAFRDGR-MEDSAIVARQ 122 Query: 160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR 219 L+ + M AAP Y P + EL +H I + E W VD + + Sbjct: 123 LIPMQMVVCAAPAYAHRYGLPRRVDELAQHRCINLRTASGRVKE---WEFKVDGLAQQAQ 179 Query: 220 ISCLQVNSYLSIMQYCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275 + + + ++ VL G GIA LP Y V D + LV + Y CY Sbjct: 180 PAAHHTFNDMDLVVRAVLDGLGIAQLPAYQVCDLLADGRLVSCLGQHAPDDGGHYLCYLS 239 Query: 276 ALKNTGKLKAFRNFIFLKAR 295 +++AF +++ + R Sbjct: 240 RKHLPTRIRAFIDYMIEQTR 259 >gi|113867589|ref|YP_726078.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113526365|emb|CAJ92710.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 315 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 136/293 (46%), Gaps = 11/293 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V GSF+ A+ + +S +SR+I+ LE ++G++L R R + +T G Sbjct: 3 DLNDLSLFAQVVEHGSFSAASRASGVPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + ++ + + ++++ +P G LR++ I + Q LL + F+ P ++ Sbjct: 63 ESFYERCRAMLNEAKAAREVIEQAREQPGGTLRVSCPIAIAQILLAPAIGHFMRANPAVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L N+ +D+ + D A+R+R+ ++ SSL R + A+P L + P + Sbjct: 123 IELETTNRRVDVIGEGFDLALRVRESMEDSSLAVRTFGESQLMLVASPALLDSIGRPRTP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSG 240 Q LD + G + + I EPR L ++ + + + G+G Sbjct: 183 QALD--GMPGVGQPPHDGKHVWTLRCKTNDSIQIAYEPR---LVTEDFVLLREAAIAGAG 237 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP +D + L ++ P T++ +P T + F +F+ Sbjct: 238 VAMLPRMYCRDALESGELELVLPQYDMPVGTLHAVFPSRKGVTPATRRFLDFL 290 >gi|13471870|ref|NP_103437.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022614|dbj|BAB49223.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 297 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 19/290 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R+F V SFT AA L L +S+ + I LE +G +L R R + T+ G Sbjct: 5 DTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R + ++E + + + +P G LRI + L + L L EFL Y I +Q Sbjct: 65 YYRRCLPILAEIEDAEAAFR--NAEPFGLLRIDASTLLTRTFLLPRLPEFLARYSRIDLQ 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC IR+ +P S +I R+L I A+P YL P S Sbjct: 123 IGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLGMIREMTCASPAYLSRHGTPASPDA 181 Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 LD H + F G+++P F + TV+ E R+ + N+ + LG Sbjct: 182 LDGHQAVGFVSSRTGEVLP-----FEF--TVNGKTREIRLPGRVAANNSDTAADLARLGL 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ P Y + + LV ++ D + YP+ + + +L+ F Sbjct: 235 GLIQAPRYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVF 284 >gi|238787250|ref|ZP_04631049.1| Glycine cleavage system transcriptional activator [Yersinia frederiksenii ATCC 33641] gi|238724512|gb|EEQ16153.1| Glycine cleavage system transcriptional activator [Yersinia frederiksenii ATCC 33641] Length = 305 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AA++L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + + L +L + AP L Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLL----------- 174 Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238 + +H L DL + +WLA R +G P+I+ Q + ++Q V G Sbjct: 175 MGEHGLKVPSDLAYHTLLHDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 233 Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIAL+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 234 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gi|284008533|emb|CBA75066.1| glycine cleavage system transcriptional activator (LysR-family transcriptional regulator) [Arsenophonus nasoniae] Length = 307 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 133/306 (43%), Gaps = 24/306 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AAE+L+++Q++IS QI GLE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTKAAEELYVTQAAISHQIKGLENFLGMKLFRRRNRSLLLTEEGLN 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ L +LQ + + G L ++ L L F YPDI ++ Sbjct: 69 YYLDIKEIFSSLREATRKLQ--AFRAKGALTVSLLPSFAIQWLVPRLSSFNHAYPDIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-Q 184 + + + D D D AI L +L ++ AP L R PL Q Sbjct: 127 IQAVDHEGDKMADDVDVAI-FYGYGNWPGLKTDRLYAEYLIPVCAPALLAG-RYPLKKPQ 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSG 240 +L H L L D+ A R + I ++ S ++Q + G G Sbjct: 185 DLVHHTL-----LHDSSRRDWQAYA---RQLSLQDIINVEQGPIFSHSAMVIQAAIHGQG 236 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA--- 294 IAL+ + + K D+ LV DV+ Y + GK+ AFR +I KA Sbjct: 237 IALINNVMTKNELDSGRLVCPFNDVLVSKKAFYLVCHDNQAELGKIAAFRQWILAKAASE 296 Query: 295 -RDWKF 299 W F Sbjct: 297 QEKWGF 302 >gi|283832805|ref|ZP_06352546.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] gi|291072493|gb|EFE10602.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC 29220] Length = 305 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 137/285 (48%), Gaps = 13/285 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AE+L +S + IS++++ LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ EL + P G LRI ++ G+ ++ L P ++++ Sbjct: 68 IYEWAQRILQDVDQMMDELSDVRQIPQGMLRIISSFGFGRRVVAPALSALAKECPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++++ +D+ + D IR+ I + +LI RKL T + A+P ++ P + + Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFVAQHGVPKQLND 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L TF L+ K + + + G I L N + Q+C+ G GIA Sbjct: 187 LS-----TFPCLVIKERDHPFGIWQMRNKEGAHSIKVTGPLSSNHGEVVHQWCLDGQGIA 241 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 L + V DN +L+ I+ + P+ ++ Y L + K++ Sbjct: 242 LRSWWDVCDNIASGHLMHILPEYYQPA-NIWAVYVSRLATSAKIR 285 >gi|221210883|ref|ZP_03583863.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221169839|gb|EEE02306.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 370 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 1/185 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + SFT AA L +S+++ +R + LE +G+ L R R L T +G + Sbjct: 47 MRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGEAYY 106 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + ++ ++ PSG LR+ + ++ L F +PD+ + L Sbjct: 107 RRCLRITADVDELEASIRRAARHPSGPLRVDLPGPVANAIVLPALGTFHARHPDLVLMLG 166 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ D DC++RL + + SS + R L + A+P YL C P ++ +LD Sbjct: 167 VSVRAADMVGDAVDCSVRLGE-LPDSSFVARPLGALERVTCASPAYLDRCGVPRTLDDLD 225 Query: 188 KHNLI 192 +H + Sbjct: 226 RHRAV 230 >gi|197284474|ref|YP_002150346.1| LysR family transcriptional regulator [Proteus mirabilis HI4320] gi|194681961|emb|CAR41382.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320] Length = 297 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 33/306 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D++R F V +GSFT AA+ L LS+S +S I LETE+ + L R+ R TLT Sbjct: 1 MQNQIDRIRSFIAVVDTGSFTQAAKYLRLSKSMVSIHIKALETELNVSLLNRNTRRFTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G L++ +V +LE T + + G LR+ +T + G++ + L +F+ L+P Sbjct: 61 ETGEILYQDFRQVLVQLEQTLDKARLGQQNLQGTLRLTSTAEFGEHYILPLLHQFMCLHP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q I ++ D+ D AIRL ++ S+ RKL + +PH LK Sbjct: 121 QLKVQYIFNSSIDDLINHKLDLAIRL-GALKDSNYRYRKLADYTIKLVVSPHLLKKY--- 176 Query: 181 LSIQELD-------------KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227 IQE+ +H+ ++ D I + + +A + N+ Sbjct: 177 -PIQEIADLAAVPYLANSNLRHSKLSQQDKINQLFSQLHSMA------------LFETNT 223 Query: 228 YLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 ++ Q + G+ +LP++ ++ LV + ++ + ++ +P K + Sbjct: 224 ISALKQMALKQMGMTILPEWYIQQEITQGELVSPIPELTLLNQSINVIFPHGEHMPRKTR 283 Query: 285 AFRNFI 290 F +F+ Sbjct: 284 LFIDFL 289 >gi|163738298|ref|ZP_02145713.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis BS107] gi|161388219|gb|EDQ12573.1| transcriptional regulator, LysR family protein [Phaeobacter gallaeciensis BS107] Length = 324 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 3/208 (1%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS+ D +R F V GS + A L +S + S +IS LE +G++LF R R LT T Sbjct: 1 MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQG + V ++ + ++ + P G L +A + LG+ LL EFL YP Sbjct: 60 EQGRAFYDGAVAVLDAVDVAEAKVMHLTDTPRGTLFVAAPLGLGRRLLAPQTPEFLATYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I ++L L ++ +D++ + D A L +P + S+L RK+ AAP Y+ P Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPDYVARRGMP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL 208 L + + P E F WL Sbjct: 179 EDGAALLREDHDCLNLRYPGASE-FQWL 205 >gi|83593549|ref|YP_427301.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576463|gb|ABC23014.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC 11170] Length = 308 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 122/291 (41%), Gaps = 39/291 (13%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR G FT AAE+L ++ +++S Q+ GLE +G+ LF R RGL LTE+G Sbjct: 9 NALRAFEAAARHGGFTRAAEELGVTPAAVSHQVKGLEDVLGLCLFRRLPRGLELTEEGQA 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S + +L L+E + +G+L ++ N L L +F P++ ++ Sbjct: 69 YLPDLSRGFDRLARAGERLREGGL--AGRLTVSVLPSFCANWLAPRLPDFQAACPEVHLR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ +N+ D + D D AIR + I L + + AP L + + Sbjct: 127 MLSENRFADFNRDGIDMAIRYGRGIY-PGLRAIPFLAEEVFPVCAPSLLNGALPLRGLAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----------------SCLQVNSY 228 L H L L ++D GEP + + Sbjct: 186 LRHHTL----------------LRSIDETAGEPWLYWRLWLAAEGIEGVAPDGGIGFTDG 229 Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 +++Q C+ G G+AL +V+D+ LVR + P+ YF A Sbjct: 230 SALVQACLAGVGVALGRTALVEDHLRTGRLVRPFAGLSRPADFSYFAVAPA 280 >gi|115359955|ref|YP_777093.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285243|gb|ABI90759.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 309 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%) Query: 23 AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 AA QL ++ S ++ +I LE V LF+R R + L+E G +R +EV ++ Sbjct: 22 AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 +++E P+G+LRI + L EF YP IQ+ +I++++ +D + D Sbjct: 82 QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDIIVNDRVVDPVEEGFDI 141 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202 A ++ PI S SLI+R+L + A+P YL P +EL +H + + Sbjct: 142 AFQIFPPI-SESLIERRLFVVRRLFCASPAYLDAHGAPQHPRELLQHTTALYSGYPSRN- 199 Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258 W T + E + ++ NS + +Y + G G+ LP + + LV I Sbjct: 200 ---RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPI 256 Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + YP + K+KA F+ Sbjct: 257 LTDFEIAPLSFAAVYPATQRQALKVKALVEFL 288 >gi|332715986|ref|YP_004443452.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325062671|gb|ADY66361.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 297 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/303 (23%), Positives = 145/303 (47%), Gaps = 38/303 (12%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE ++G L R R +LTE G Sbjct: 6 RIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIAT-----TIDLGQNLLQGNLKEFLLLYPD 121 +R S++ +++ ++E + GKLRI+ D+GQ+L+ +F P+ Sbjct: 66 YRTASDILKEIDNLADLVREKNADLKGKLRISVPRTFIDADVGQSLI-----DFAKENPE 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----- 176 + ++++ D++ +D+ + D AIR+ + ++ S LI RK+ ++A A ++ Sbjct: 121 LSLEIVADDRFVDLIEEGFDLAIRITR-LEDSGLIARKISDFRVYAVATADFVARHGPLN 179 Query: 177 -----CREPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230 R P I + HN + + + + + T+ PI +VNS + Sbjct: 180 GPQDFSRVPFIIDTNTRFHNTVRYLE-----ADGGSNSVTISGPI--------EVNSPQA 226 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 ++ G GIA++PD+I + + LV + +D I+ +Y YP K+++F Sbjct: 227 TLRAARAGLGIAMVPDFIARPFIQSGELVTLFDDYISKDRGIYAVYPHRRYLPAKVRSFV 286 Query: 288 NFI 290 +++ Sbjct: 287 DYL 289 >gi|298291216|ref|YP_003693155.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296927727|gb|ADH88536.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 287 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 13/244 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W L +F +AR G+ A +L +Q ++ R++ LE G+ LF R + G LT++ Sbjct: 4 LEWSDLPIFLAIAREGTLGAAGRRLGQTQPTMGRRLRALEAAAGVTLFQRTSDGFVLTDE 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + + Q +L S G LR++ + G LL L EF L+P + Sbjct: 64 GQAMYAHAIRMEDEALAMQRQLAGSDGGLEGLLRLSCSDWFGTTLLSPVLAEFASLHPKV 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ D + ++ AD +R+ P +I R+L+TI Y + P + Sbjct: 124 TVELLTDARVYSLARREADLVMRI-APFDEPEVIARRLMTIRYGLYTGSDRWR----PQA 178 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGI 241 H + D M D W+ + PR + + ++ I + CVLG+G+ Sbjct: 179 GDGAGCH--LVLMDTAFGGMPDVAWITRL-----LPRATVVSRSNSRDIQARLCVLGAGL 231 Query: 242 ALLP 245 A+LP Sbjct: 232 AVLP 235 >gi|170700881|ref|ZP_02891868.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170134199|gb|EDT02540.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 26/253 (10%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + D L +F VA SFT AAE L + + +S I LE +VG+ L +R R + LTE G Sbjct: 3 NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ +++ Q + + G+LR+ +L ++++ L + + +P+++ Sbjct: 63 RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L ++ +D+ + DC IRL PI +LI R L + M A+P YL P ++ Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPITDDTLIVRPLGKLRMTNAASPGYLARYGIPHTL 181 Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIM 232 +L H +T G P W + P G+ P S +QVN S+ Sbjct: 182 DDLRTQGHRMVHYTLTLGARHP------GW----EYPHGDGYASLPLPSAMQVN---SVQ 228 Query: 233 QYCVLG-SGIALL 244 Y G +GI L+ Sbjct: 229 TYHAAGLAGIGLI 241 >gi|167562974|ref|ZP_02355890.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 9/295 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LE +G++L R R TLTE+G Sbjct: 5 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTEEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H ++ ++E + +++ G LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVKILAEIEQAETLMRDKRGTVGGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDIDVAVRIGM-LADSSLIARELAPNYRVLGASPAYLAERGMPAHP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ P+ W P+ + N + + + G+GIAL Sbjct: 184 ADLCAHRCIVMGEQ-PR----VEWRFDGPEPVAVEVSAAFLTNDGGAARTFALEGAGIAL 238 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + V + L R++ + + + ++ YP +++ F +++ + R Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGAELR 293 >gi|186897033|ref|YP_001874145.1| putative DNA-binding transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|186700059|gb|ACC90688.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis PB1/+] Length = 303 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA +L S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI+ + + QN+L + L YP + + L Sbjct: 66 YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRISCSSTMAQNVLATMTADMLKAYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q+S L R+L + M AA YL P Sbjct: 126 VAGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|325275780|ref|ZP_08141652.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099085|gb|EGB97059.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 315 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA+ GSFT AA QL + +++SR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ + +GQ+ + + + +PD+ L Sbjct: 66 LMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D +I L + S + ++L + A+P Y+ P +L Sbjct: 126 TMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPAYIARHGLPHKPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 KH + ++ + WL D P G+ + S VN+ ++ G G+ Sbjct: 186 LKHACLR---MVSPVIPLEKWL--FDGPEGQEMVNITSSPFMVNTADAMKTAIRSGMGVG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y D + +LVR++ + +Y YP K+K + ++ Sbjct: 241 VLPIYSAIDGLRDGSLVRVLPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291 >gi|239818197|ref|YP_002947107.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239804774|gb|ACS21841.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 310 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 10/252 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V R GSF AA +L L +++SR+I LE ++G +L R R LTLT Sbjct: 2 LDLNDIAMFVQVVRHGSFAGAARRLGLPPNTVSRRIQQLEAQLGTRLMQRSTRRLTLTSA 61 Query: 63 GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G H R V +E Q L S +PSG +R+A T D + +FL +P Sbjct: 62 GQAFHERCAGPVDGLVEAGQ-ALITGSQQPSGLVRVAATADFFDFFPMEWVADFLAAHPL 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREP 180 +++ +L + D+ + D A R + S + RKL+ A+P Y+ P Sbjct: 121 VRVDFVLSDARADLIAEQIDIAFR-GGALPDSGYVGRKLLGARTDGMVASPAYIAARGAP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 ++Q+L H+ +T P W LA E +++ N+ ++ + + G Sbjct: 180 ATLQDLANHDCVTS----PHPSGRTLWRLAGPGGTEEEVQVAGRFSGNTAQALRKAALAG 235 Query: 239 SGIALLPDYIVK 250 GIALLP + + Sbjct: 236 LGIALLPPTMAR 247 >gi|171057516|ref|YP_001789865.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774961|gb|ACB33100.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 7/238 (2%) Query: 16 RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75 RS +FT AAE+L L++S++ + ++ LE +G KLF+R R + LT G + Sbjct: 17 RSRTFTDAAERLGLTKSAVGKTVARLEERLGFKLFHRTTRLMRLTADGEAYLSACTAAIE 76 Query: 76 KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135 ++ Q L + SG+L I + G+ +L L E +PD+ + L + D+ Sbjct: 77 EVAAAQAALSSRNQILSGRLHIDMPVAFGRRVLLPVLIEITRPHPDLSLTLTFTDATSDL 136 Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195 + D AIR SS L+ R+LVT A+P YL+ EP+++ ++ H I Sbjct: 137 LQEDVDLAIRFGALTDSSDLVARRLVTQERVICASPEYLRMHGEPMTLADVRAHRCIVGS 196 Query: 196 DLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251 P + + V+R P R+S + ++M + G GI LP +V++ Sbjct: 197 LKGPPLVWFVSDGGAVERFTPPATHRLSDGE-----AMMDAAIGGLGIVQLPISLVRE 249 >gi|170022733|ref|YP_001719238.1| putative DNA-binding transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169749267|gb|ACA66785.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis YPIII] Length = 303 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA +L S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L + L YP + + L Sbjct: 66 YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q+S L R+L + M AA YL P Sbjct: 126 VAGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|53722921|ref|YP_111906.1| LysR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76818848|ref|YP_336155.1| LysR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|134278498|ref|ZP_01765212.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|167820944|ref|ZP_02452624.1| transcriptional regulator lysR family protein [Burkholderia pseudomallei 91] gi|167829297|ref|ZP_02460768.1| transcriptional regulator lysR family protein [Burkholderia pseudomallei 9] gi|167916050|ref|ZP_02503141.1| transcriptional regulator lysR family protein [Burkholderia pseudomallei 112] gi|226195570|ref|ZP_03791157.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254185979|ref|ZP_04892497.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|254264934|ref|ZP_04955799.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] gi|52213335|emb|CAH39378.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|76583321|gb|ABA52795.1| transcriptional regulator lysR family [Burkholderia pseudomallei 1710b] gi|134250282|gb|EBA50362.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 305] gi|157933665|gb|EDO89335.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pasteur 52237] gi|225932055|gb|EEH28055.1| transcriptional regulator, LysR family [Burkholderia pseudomallei Pakistan 9] gi|254215936|gb|EET05321.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 1710a] Length = 315 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q ++ R ++ LE + + LF R + GL T+ Sbjct: 7 WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L R +E +E+T L ++ G +RI+ + +G +L + +P Sbjct: 67 AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + ++L L N+ D+ AD A+R+ +P Q + LI R + I + +A YL C P Sbjct: 123 ALTVELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARCGTP 181 Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 EL +H LI F I K F+ A L+ +S L+ + Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G+GI + K +P LVR++ ++ E L+ + + +A Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281 >gi|329298649|ref|ZP_08255985.1| LysR family transcriptional regulator [Plautia stali symbiont] Length = 291 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 21/296 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++LR + V +GS T AAEQL + S ISR +S LE+++ L +R R L LT Sbjct: 1 MKIILEELRAWVAVVDTGSITAAAEQLDQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G ++ +E + + + PSG+LR+ +++ + EF YP Sbjct: 61 EEGLIFLDHARQILASVEQAEEHIAQRRDMPSGRLRVNANTPFTLHVIVPLVAEFCARYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ++L D+ ID+ D AIR+ + ++ S+L R L +P YL+ P Sbjct: 121 QIQLELNTDDIVIDLLEQQTDIAIRIGE-LRDSTLRARVL--------GSPAYLEKAGAP 171 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRIS-CLQVNSYLSIMQYCVLG 238 S+++L H L+ F L D + + V + GE RI L +S ++ Q + G Sbjct: 172 QSVEDLLTHQLLGFSQL------DAHNVWPVWQREGEFLRIKPTLCASSGETLRQLALAG 225 Query: 239 SGIALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I L D++ +++ LV+++E D ++ Y + ++ F +F+ Sbjct: 226 QSIVRLSDFVSREDRASGRLVQVLENDTRELRLPIHAVYYRNQSLSSRITCFLDFL 281 >gi|52842592|ref|YP_096391.1| LysR family transcriptional regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629703|gb|AAU28444.1| transcriptional regulator, LysR family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 308 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 137/287 (47%), Gaps = 15/287 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F SF+ AA++L++S S +S+QI+ LE E+ + L R L +TE G +L+ Sbjct: 7 LKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLIVTESGHRLY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE ++ + +G +R+ T+ L +F+ YP I+I I Sbjct: 67 EKALDLFEQLEVVKVIATPDQFELNGIIRLYLTVTPAIPYLTSLSIQFMRKYPGIEIDFI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + ++ D AI ++ + L+ ++L +I + +A+P Y+ P +I EL Sbjct: 127 VGSDTKELYSSTFDLAISFDD-VKHAKLVCKRLFSIQRNVFASPDYITQYGLPQTIDELP 185 Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 KHN + T L K + FN + G + N+ + Q V G G+ L P Sbjct: 186 KHNCLINTLYGLQNKWV--FN--KKIIHVSGN-----FKSNNAGVLKQAAVAGLGLLLAP 236 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + V + N L++++ +P +Y YP+++ + K+ NF Sbjct: 237 YFSVYEEIKNEALIQVLPHKSSPDINLYAIYPKSIMDEQKINLLLNF 283 >gi|254249116|ref|ZP_04942436.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124875617|gb|EAY65607.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 296 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 128/300 (42%), Gaps = 23/300 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 12 NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + +L VK L I+TT L L +F +PD ++ Sbjct: 72 YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTEAHPDYDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSI 183 +I D + D D AIR KP L L + M A +P L P L+ Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDMCAVCSPSVLTAPASPRALAG 187 Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q L D H DL P+ +LA + P+ L+ N + V G GI Sbjct: 188 QVLLHDAH------DLWPE------FLAAMPAPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235 Query: 242 ALLPDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 AL + +V+ + R+ + D P S Y YP ++ + R ++ A D + Sbjct: 236 ALATEPLVERDIAAGRLCKPFDFAFPLSMGFYLVYPAERRDDDAIAVMRAWMIQAASDGR 295 >gi|33601756|ref|NP_889316.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33576193|emb|CAE33272.1| Putative LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 300 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 12/290 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+F + ++R F VAR SFT AAEQLH+SQ+ +S + LET++G +LF R R + LT Sbjct: 1 MNFSFRQMRAFLAVARHASFTKAAEQLHISQAGLSAMVRDLETQLGSRLFERTTRAVRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G L V L +L +LRI T + +++ LK F L P Sbjct: 61 PAGQSLLPVAQRAVQDLGAAVAQLGALGAGGRDRLRIGVTPLIACSVIPDVLKRFQALAP 120 Query: 121 DIQIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 ++++++ LD I ++ D ++ I+R+ V A A P R Sbjct: 121 QVRVEVMDLDRSLIAARVESGDLDAGFGAFFTRAAGIRRQTVFPARLALAVPRVEGERRR 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLG 238 + ++D+ LI D P L V+R +G + +V ++L +++ G Sbjct: 181 SVRWPQIDRDGLIALPDENP-----IQRL--VNRHLGVQGDAPARVVTHLETVLAMVEAG 233 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTV-YFCYPEALKNTG-KLKAF 286 G A++P + R+ + P V Y+C A + G ++ AF Sbjct: 234 LGQAVVPSFAAVARRRW-RVSLVPVAPRVAVDYYCIMRAGQGDGERIDAF 282 >gi|13476840|ref|NP_108409.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14027601|dbj|BAB53870.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 300 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 6/288 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF R SFT A +L ++Q+++S + GLE ++G KLF R R ++LTE G + H Sbjct: 16 VFEAAGRLSSFTAAGRELGMTQAAVSYAVRGLEEQLGAKLFQRRHRQVSLTEAGERFHAD 75 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 S + + +L+ + G + +A + G + L++F P I +++ Sbjct: 76 VSLGLSHIRKSAEDLRLQAT--GGHVTLAASTAFGSFWMMPRLQQFRDELPGIDLRIQTA 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++D+DI + A+R +P L + A YL P ++ EL H Sbjct: 134 DRDLDIIAEGIPLAVRGGEPRDWPDYHSLPLADEEIFPVAGTSYLAKFGMPRAVGELATH 193 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 LI + + W + +G+ L++N Y ++Q + G GIAL ++ Sbjct: 194 RLIHLEEPYREAASWDEWFQSAGGSLGDT-ARGLRINDYGLVIQGVMEGQGIALGWRHLA 252 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 + LV++ + V+ Y +P+ + + + R+++ +A Sbjct: 253 ERLLATGLLVQVTDHVLKTGKAFYIVWPKNRELSDNARKVRDWLAAQA 300 >gi|330816309|ref|YP_004360014.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327368702|gb|AEA60058.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 316 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 17/293 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTEQ 62 +WD LR F VAR + + AA +L + ++++R++ LE + LF + A G LT + Sbjct: 12 NWDDLRYFLAVARLQTASAAARRLGVDHTTVARRVRELEASLEAVLFEKSRAGGFVLTSE 71 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L E+ +++ + + + SG +RI +T G L L F +P+I Sbjct: 72 GQRLLAYADEIETAVQSASEQFKGGANLLSGHVRIGSTEGFGSFFLAPQLAHFARAHPEI 131 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L+ + +S AD AI L +P + + KL + Y YL+ R P+S Sbjct: 132 SIDLLPVPHFVSLSKREADIAILLERP-ERGQYVHTKLCDYRLQLYGTRDYLR--RHPVS 188 Query: 183 --IQELDKHNLITF-GDLI--PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 + EL +H + + DL+ P+ L ++R I + L S ++ + Sbjct: 189 PRLAELREHAFLNYVADLVFSPE-------LLYLERTIPGAGAN-LSTTSIVAQYHAALQ 240 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +A+LP ++ + LV + + + + C E ++N ++ A +F+ Sbjct: 241 GTALAILPCFMAAPDERLVPVFPGEVAITRHFWLCCREDIRNLRRISALWDFL 293 >gi|238758902|ref|ZP_04620074.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia aldovae ATCC 35236] gi|238702859|gb|EEP95404.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia aldovae ATCC 35236] Length = 303 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 24/291 (8%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68 VF + GS AA+ L +S++ ++R ++ +E G +L +R R L+LT G + L R Sbjct: 9 VFVAIVERGSMIAAADALAMSRAMVTRYLAEMERWAGARLLHRTTRKLSLTHAGEATLER 68 Query: 69 VTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 LE Q E E V SG LRI+ + LGQ+ L + ++L LYP + + L Sbjct: 69 CR----QMLEFAQDMAEGLEHDVL-SGLLRISCSQSLGQSALVIAVTDYLRLYPQVAVDL 123 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++N+ I++ + D A+R+ + +LI R L T H AAP YL P + +L Sbjct: 124 QMNNRAINLVEERIDLALRITNELD-PNLIARPLSTCHSVVCAAPAYLSRQGIPRTPPDL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 HN +T+ K + +F+ GE + L N + ++ + G+GI+ Sbjct: 183 AVHNCLTY-SYFGKSLWNFDLQ-------GEKSVVAVSGNLCANESVVLLNGALEGAGIS 234 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L P Y + +LVR++ D + +Y Y + L+ +F+ Sbjct: 235 LQPCYSAAPYIASGDLVRLLPDYQPQAMGIYGIYTSRRQMPAALRTMLDFL 285 >gi|212709363|ref|ZP_03317491.1| hypothetical protein PROVALCAL_00399 [Providencia alcalifaciens DSM 30120] gi|212688275|gb|EEB47803.1| hypothetical protein PROVALCAL_00399 [Providencia alcalifaciens DSM 30120] Length = 304 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/286 (23%), Positives = 141/286 (49%), Gaps = 8/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF + GS + AA++L +S++ ++R ++ +E G++L R R L+LT G ++ Sbjct: 7 VQVFITIVEQGSLSGAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTSAGEGVY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + +E + + +G +RI+ + + Q L + EFL +YP++ I + Sbjct: 67 QQSLQLNALSLSVPVEQKHDAKALAGLVRISCSQSIAQCALSLAISEFLQIYPNMMIDMQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + NK +++ + D AIR+ ++ +LI + L T H A+P +L+ P+ ++L Sbjct: 127 ISNKSVNLIEERIDLAIRITNQLE-PNLIAKPLSTCHSVICASPKFLQGKHLPIKPEDLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +T+ + M F + + R+S N + +M+ + G+GI++ P Y Sbjct: 186 LMECLTY-SFFGRSMWRFEKEGEESTVLVDGRLSA---NESVFLMEATLNGAGISMQPYY 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V + L++++ D +Y Y L+A +F+ Sbjct: 242 SVASYLQSGELIQLLPDYTPMPLGIYGVYTSRQHMPTPLRAVIDFL 287 >gi|32033547|ref|ZP_00133874.1| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208384|ref|YP_001053609.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae L20] gi|126097176|gb|ABN74004.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 294 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 94/191 (49%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR +FT AA +L +SQS++SR I LE+ +G++LF R R L+LT G Sbjct: 6 NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++L + + + KL+ L PSG++RI + +L L +F YP+IQ Sbjct: 66 NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI D DI + D +R + + R M +P+Y P + Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPNYFHTHGFPRTP 185 Query: 184 QELDKHNLITF 194 +L H + + Sbjct: 186 SDLAHHQCLNY 196 >gi|325527769|gb|EGD05043.1| putative HTH-type transcriptional regulator YcjZ [Burkholderia sp. TJI49] Length = 298 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 108/241 (44%), Gaps = 7/241 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +VA SFT AA +L +SQS++S+ I GLE + ++LF R R ++LTE G +L Sbjct: 9 LSAFVMVAEERSFTRAAARLGVSQSALSQTIRGLEARLDLRLFARTTRSVSLTEAGERLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ E+ E KP+G +R+ Q++LQ + FL +P I+I++ Sbjct: 69 NRVGPAMSEIDAGLEEIGELVGKPTGVVRLTADEFAVQSVLQPAIARFLPDHPGIRIEIT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D DI D +R + + + R I M AP YL P +L Sbjct: 129 TDYGLADIVDGRFDAGVRRGRLVAKDMIAVRIGPDIPMTVVCAPAYLDRHPAPKRPADLV 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H I +P E W+ T R E RI L S + + G G+A L Sbjct: 189 SHACINL--RLPTHGEFLPWIFT--RAGNEQRIKVDGPLVYTSIAPVRDAALAGLGLAYL 244 Query: 245 P 245 P Sbjct: 245 P 245 >gi|160897559|ref|YP_001563141.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363143|gb|ABX34756.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 305 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 8/293 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V + SFT A + +Q ++++QI+ +E + ++L R+ RG++LTE G+ Sbjct: 5 DAMHMFVRVVETSSFTKVAHEFATTQPTVTKQIAAMEARLKVRLLNRNTRGVSLTEAGAL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + +Q + G+LRI +++ G+ +L EF+ P +Q+ Sbjct: 65 YYEKCKTIVNDVAEADKVVQVRQTQVQGQLRIGSSVAFGRRVLIPLALEFMAHNPQVQVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ D+ + D A+RL K + SSL R L A+P YL+ P + Sbjct: 125 LSFEDRYTDLVANGIDVALRLGK-LADSSLGARTLGVNPWVLVASPTYLRKRGTPRRPSD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + + + + + + P+ L+ N+ +++ GIA LP Sbjct: 184 LKEHATLIYSSV--QGNDIWRLRNASGEPVSVAVTGRLRSNNLSALLAASRSHMGIAALP 241 Query: 246 DYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y+ D+ R++E + T P ++ YP K+++F FL+ R Sbjct: 242 RYVAHDSLEAGRVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQSF--IAFLQGR 292 >gi|116692884|ref|YP_838417.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116650884|gb|ABK11524.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 328 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 6/285 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +W++ R F V GS + AA L ++Q + R ++ LE G LF R GL T Sbjct: 31 IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 90 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E L + + G +RI+ + + +L L + +P Sbjct: 91 EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPLLAQLRRDHP 150 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+L+ ++ D+ AD A+R+ P Q +L+ R++ I + YA YL + P Sbjct: 151 GLVIELVPTDRIQDVLKREADIAVRMAPPAQ-DALVARRVGEIEVGLYARDDYLAHHGAP 209 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +I L H LI F + P F A P+ + L+ +S L+ + G G Sbjct: 210 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 264 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 I + K + LVR++ D + + E L+ + + +A Sbjct: 265 IGFCQSALAKRDARLVRVLPDALGMRLDTWVVMHEDLRTSPRSRA 309 >gi|296113235|ref|YP_003627173.1| LysR family transcriptional regulator [Moraxella catarrhalis RH4] gi|295920929|gb|ADG61280.1| LysR family transcriptional regulator [Moraxella catarrhalis RH4] gi|326560227|gb|EGE10615.1| LysR family transcriptional regulator [Moraxella catarrhalis 7169] gi|326562872|gb|EGE13159.1| LysR family transcriptional regulator [Moraxella catarrhalis 46P47B1] gi|326563686|gb|EGE13938.1| LysR family transcriptional regulator [Moraxella catarrhalis 103P14B1] gi|326565234|gb|EGE15419.1| LysR family transcriptional regulator [Moraxella catarrhalis 12P80B1] gi|326566455|gb|EGE16605.1| LysR family transcriptional regulator [Moraxella catarrhalis BC1] gi|326570262|gb|EGE20307.1| LysR family transcriptional regulator [Moraxella catarrhalis BC8] gi|326570999|gb|EGE21023.1| LysR family transcriptional regulator [Moraxella catarrhalis BC7] gi|326575806|gb|EGE25729.1| LysR family transcriptional regulator [Moraxella catarrhalis CO72] gi|326576887|gb|EGE26793.1| LysR family transcriptional regulator [Moraxella catarrhalis O35E] Length = 289 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 19/243 (7%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR VF V R GSF+ AA++L ++ S++S+QI LE ++G+ L +R R L+LTE Sbjct: 3 DNLRGMAVFSSVVRHGSFSGAAKELGITTSAVSQQIRSLENDLGVSLLHRSTRKLSLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ +++ E + + + + SG LRIATT +L + L L ++L+ + ++ Sbjct: 63 GESLYSSATQMVKAAEQGRDSVIQLKDELSGSLRIATTPELAKAYLLPALSDWLVEHDNL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + I+ ++D+ D D A+ L + Q + L T+ A+P Y+KN + + Sbjct: 123 SLN-IISRDNLDMIEDRVDVALLLSEQAQGIA-----LKTVEQMLIASPEYIKNHGDVEN 176 Query: 183 IQELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 ++ L H +I G+ + +E D N +V R+S + N++ + G Sbjct: 177 VKALATHTMIICGEKPSESIEFKDANGKQSV-------RVSSRIITNNHAIALNLAAEGY 229 Query: 240 GIA 242 GIA Sbjct: 230 GIA 232 >gi|261820739|ref|YP_003258845.1| LysR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604752|gb|ACX87238.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length = 300 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 129/267 (48%), Gaps = 14/267 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +GSF+ AA L++ Q ++SR ++ LE +G++L R R L LT +G + + Sbjct: 10 FKRTVETGSFSAAARDLNMGQPNVSRYVAALEEHLGVRLLQRTTRQLVLTPEGERYYADV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S + + ++ L + + +P+G LR+A + + L + FL YP + + L L + Sbjct: 70 SRILDAVAESESSLSDET-EPTGLLRVACPTAMAHSFLVPQIPAFLARYPGLSLDLQLSD 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDKH 189 + +D+ + A+ AIR+ P S+ ++ + + + Y A+ YL P + ++L H Sbjct: 129 RFVDLVEEGAELAIRIGHPTDSA--LRARRIGLFTRVYVASTDYLSRRGIPQTPEDLRDH 186 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 + I + L +++ T G +VNS +I + + G GIA P ++ Sbjct: 187 DCILYSLL--NTGNTWHFRDTEINVSGR-----FRVNSPQAIQEAVIAGLGIANGPAWLY 239 Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273 +D + L +++ D P + F Y Sbjct: 240 EDGLKSGRLCQVLCDYEAPPVPIQFLY 266 >gi|218679604|ref|ZP_03527501.1| LysR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 240 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 1/180 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L + +++++ I GLE + KL R R + +T G+ + Sbjct: 7 MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE L S PSG+LR+ ++ L +F YPDI+I L Sbjct: 67 ERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D + DCA+R P SLI R++ + M A+P Y++ P ++L+ Sbjct: 127 VGDRTVDYLAENVDCALRAGTP-ADQSLIARRVSEVEMITCASPSYIQKFGVPERPEDLE 185 >gi|170722261|ref|YP_001749949.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169760264|gb|ACA73580.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 305 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 11/269 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F + R SF A ++ +S S++S I GLET +G++L R R +TLT G +LH + Sbjct: 14 FLAIVRHQSFNRAGLEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHTLI 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S ++ L +P+G++R+ T D LL L F YPDI+I L + N Sbjct: 74 SGPIDEIGQAMEVLNRYRDEPTGRIRLNTLSDGADLLLGPVLPLFNDRYPDIEIDLTVTN 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ D IR + + QR I +YL+ EP Q+L KH Sbjct: 134 RLVDVIGGGHDAGIRYGGTVPEDMIAQRLSPDIRWVVAGTANYLQRFGEPKHPQDLLKHR 193 Query: 191 LITFGDLIPKCMEDFNWLATVDR-PIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYI 248 + L M D+ + ++ I P + + + +S++++ G+G+ P+ + Sbjct: 194 CLRI-RLGNDRMYDWEFEKNGEQLAIAVPGATTIDETRIGVSLIRH---GAGLMYAPEPV 249 Query: 249 VKD---NPNLVRIMED--VITPSFTVYFC 272 + + +LVR+++D + P F +Y+ Sbjct: 250 IAPLVASGDLVRVLDDWSSVAPGFHMYYS 278 >gi|21240813|ref|NP_640395.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21106081|gb|AAM34931.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 291 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 12/246 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L F +VA + A+ S++++SR+I+ LE ++G++L R ARGL LTE Sbjct: 1 MDLNALIDFALVAANQGLGKASRASGRSKATLSRRITELEEQLGVRLVERSARGLKLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L T ++ +E P G+LR+A+ + Q + +F YP+I Sbjct: 61 GQQLMARTEVPLSEVAEAMTAAREGLSTPRGRLRVASPVLFSQLAMGRIGADFCAAYPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++++ +++ +D+ + D AIR+ P SSL+ R + AAP S Sbjct: 121 TLEVVAEDRTVDLVEEQFDVAIRI-NPRPDSSLVGRCFAKDRLVVVAAP----------S 169 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 I + ++ + W+ R EP + +Q +S+L + + G G+A Sbjct: 170 IAMPSGDAMHPVPGVVMSSFQPTTWVLDDGRLALEP-VPRMQFSSFLMVRDAVIAGGGVA 228 Query: 243 LLPDYI 248 L+P I Sbjct: 229 LIPQSI 234 >gi|91223797|ref|ZP_01259061.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] gi|91191289|gb|EAS77554.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] Length = 292 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V GSF +AA +S + + + +S LE +G +L +R R +LTE G + Sbjct: 7 MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGRLYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +Q +P+G +++ + G+ ++ + +FL +PD+ ++L+ Sbjct: 67 QECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPDLNVELM 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN ID AD IR+ + + SSL+ RKL HM A+P YL+ S+ +L Sbjct: 127 LDNNLIDPYRSEADVIIRIGELV-DSSLVARKLGEYHMTYCASPSYLEQHAPIQSLDDLA 185 Query: 188 KHNLITF 194 H+ + F Sbjct: 186 HHHCLGF 192 >gi|256111989|ref|ZP_05452940.1| transcriptional regulator, LysR family protein [Brucella melitensis bv. 3 str. Ether] gi|265993440|ref|ZP_06105997.1| LysR family transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262764310|gb|EEZ10342.1| LysR family transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 261 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 121/245 (49%), Gaps = 3/245 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA ++ S++ +S+ + LE E+G +L R R +LTE G Sbjct: 6 RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ +++ Q + E+S G+++++ ++ +L +F L +P+I + + Sbjct: 66 YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 LD++ +D+ + D AIR+ + +Q SSLI ++L H AP + +P ++L Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 I D + ++++ + P +++NS ++ + G G +LP Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242 Query: 247 YIVKD 251 +I +D Sbjct: 243 FIAED 247 >gi|198245418|ref|YP_002214287.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939934|gb|ACH77267.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622032|gb|EGE28377.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 321 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 7/246 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L VF VAR+G F AA +L LS S IS++I+ LE + +LF+R+ R + LT +G Sbjct: 21 EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +V +++ L +G + I + G + L F++ YPDI ++ Sbjct: 81 ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++++D+ + D IR+ I + I R+L T A+P YL+ +P S+ Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243 L +H+ + +I + F NW+ T + R++ NS ++ + + G GI L Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255 Query: 244 LPDYIV 249 ++ V Sbjct: 256 RSEWDV 261 >gi|114561397|ref|YP_748910.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114332690|gb|ABI70072.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] Length = 293 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 11/264 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L + +V SG F+ AA+ L++ + +SR +S +E ++G+ + R R + LT++G + Sbjct: 6 DDLDILLMVVDSGGFSAAADALNIQVARVSRAVSKIEQQLGVTILNRTTRRVELTDEGRQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +L+ + EL P G+LR+ + L +K+F YPDI++ Sbjct: 66 FVESVRGGLQQLQRAEDELVRRGELPQGRLRVDAASPFVFHQLVPLMKDFRAAYPDIELA 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ K + S+L R L +H A+ YL P + + Sbjct: 126 LTSNEGYVDLLEKRTDVAIRIGK-LADSTLHARPLGKSALHIVASAEYLARRGVPQKVSD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ F + PK + +W L D + P IS ++ ++ Q + G+GIA L Sbjct: 185 LACHELLGFTE--PKILN--HWPLKGCD--VITPTIST---SNGETLRQLALAGNGIACL 235 Query: 245 PDYIVKDNPNLVRIMEDVITPSFT 268 +++ D+ R++ + + FT Sbjct: 236 SSFMINDDLAAGRLVPILQSEKFT 259 >gi|293396104|ref|ZP_06640385.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421602|gb|EFE94850.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 312 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 14/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V SG+F+ AA L L +S+++RQI LE ++ I L +R +R LTLTEQG + Sbjct: 22 MQTFIRVVESGAFSRAATLLDLPKSTVTRQIQALEQQLNITLLHRTSRRLTLTEQGRAYY 81 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L + + + PSG + ++ L + + +L +F YPDIQ+ L Sbjct: 82 QGAVQWLEQLRQFEGGVIGAGQAPSGVIHVSMPHTLAYHKVIPHLTDFYRRYPDIQLTLN 141 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N ID DC +R+ + + +LI R L T+ A+P YL+ P L Sbjct: 142 LANHAIDPIEAQVDCVVRI-GALMNDTLIARSLGTLERITCASPDYLQRHGTPTHPNALR 200 Query: 188 K-HNLITFGDLIPKCMEDF-NWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIA 242 + H +I + P+ + F + L D + G+ R + VN + + G G+ Sbjct: 201 RDHQMIHV--VSPQSGKPFIHQLLRQDERVTLDGDWRFA---VNDANAALHAARAGLGVV 255 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LV I+ D V+ +PE K++ F ++I Sbjct: 256 TTYHFLAEEALRRGELVPILPDWQCEPAAVHIAWPENRHLASKVRYFIDWI 306 >gi|269959905|ref|ZP_06174282.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835204|gb|EEZ89286.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 292 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 29/296 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +KL +F VA++ +F+ AAEQL +S+S +S QI LE+E+ L R R + LT +G Sbjct: 8 EKLMLFAEVAQTLNFSRAAEQLGISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGES 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ + L + S + G +R+ + +L F L+P+++ + Sbjct: 68 IFAQAEDLKRRVMEMEKSLSQQSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEFE 127 Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + +++ D A R R P + ++I L+ + A+P YL+ P ++ Sbjct: 128 ILSSYQAFNLTETSVDFAFRATRTPPE--NMIAHHLLNYYHWLVASPQYLQEEGTPETLA 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238 +L +H +T + W P+ + +Q +LS + + + G Sbjct: 186 DLKQHQCLT-------TLHQKEW------PL---KTGTVQTQGWLSSNENRLLKESALSG 229 Query: 239 SGIALLPDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L Y V+ +N LV+++ E+ VY YP+ + + K KAF F+ Sbjct: 230 NGIARLASYFVEQDVENGRLVQVLSEETDHQHNAVYLVYPQLIYQSAKTKAFIEFV 285 >gi|254463336|ref|ZP_05076752.1| transcriptional regulator, LysR family [Rhodobacterales bacterium HTCC2083] gi|206679925|gb|EDZ44412.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium HTCC2083] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 133/300 (44%), Gaps = 14/300 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ +WD LRVF VAR S + A ++L + +++ R+++ LE +G LF + G L+ Sbjct: 1 MAQNWDDLRVFLAVARGQSLSAAGKRLRIDPATVGRRVARLEQRMGTPLFAKSPLGYELS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLL 117 G++L + + L S+ +G +RI LL + Sbjct: 61 ASGARLLPLAEHAEQAMGAAGELLGTSNTHGNELNGSIRIGAPDGCANFLLPQVCARIVQ 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +PD+ +Q++ + +++S AD AI + P +Q KL +H A P YL+ Sbjct: 121 DHPDLDVQIVALPRVVNLSKREADMAITVSAPTAGRLTVQ-KLSDYKLHLAAVPQYLQRA 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 S ++L H +I + +P + ++ ++L +G R+ L NS Sbjct: 180 SALQSKEDLRHHRMIGY---VPDMIFDKELDYLGA----LGVERVP-LASNSVSVQFNAI 231 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 G+G+ ++ D+ + P L R++ D I+ + + Y + + +L F + R Sbjct: 232 RQGAGLGIVHDFALPSAPELKRVLTDEISLTRSFYLVRHSSDRRLQRLNRFAQALVAGVR 291 >gi|121604447|ref|YP_981776.1| LysR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593416|gb|ABM36855.1| transcriptional regulator, LysR family [Polaromonas naphthalenivorans CJ2] Length = 309 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 17/295 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F VA G F A L L +S +SR+++ LE+ +G++L R R L+LTE G Sbjct: 3 DLNDMLYFAEVAERGGFAAAGRALGLPKSRLSRRVAELESRLGVRLLQRTTRKLSLTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R S + + + V+P G LR+ + L Q+ L + +L L+P ++ Sbjct: 63 DIYLRHCSAMRDEALAAAEAVAHLQVEPRGMLRVTCPVTLAQSTLGYLIPRYLALFPLVK 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L + N+ +D+ + D A+R+R + S SL+ ++L H A+P L+ P + Sbjct: 123 LDLRVTNRVVDLVEEGIDIALRVRPTLDDSGSLVVKQLGATCGHLLASPEQLRRQGTPAT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVL-G 238 +++L + D + D + P G+ + Q V L ++ VL G Sbjct: 183 LEDLARL------DTVAMSATDGRSAWVLVGPDGQEFVFQHQPRYVADDLQTLKLAVLAG 236 Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +GI+ LP+++ + LV ++ + +P G++ A R+F+ Sbjct: 237 TGISFLPEFLSRAELQAQLLVPVLPGWAPKPGMAHAVFP---SRRGQIPAVRSFL 288 >gi|109898963|ref|YP_662218.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109701244|gb|ABG41164.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica T6c] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 28/301 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ ++ + F VA + F+ AA +L ++ S ISR+++ LE E+G+ L R R + LT Sbjct: 8 MNISFNGIIEFVAVAETHGFSAAARKLGVNVSHISRKVAALEKELGVSLLARSTRTVRLT 67 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G E+ + L+ + + V+ SG L+++ + + + L EF L+P Sbjct: 68 DAGQAYFARCQELVYGLQEANETVLDKQVELSGVLKVSAAGEFAEQHIAPLLIEFGQLHP 127 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I++ +++ ++ D D +IR P++ SSLI RKL + A A+ YL+ P Sbjct: 128 KLTIEMDFNSQMVNFVDDAFDFSIRY-GPMKDSSLIARKLTNRSLVAAASKRYLEVNGTP 186 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVL 237 EL H +C+ N D +P+ + + NS S++ C Sbjct: 187 AHPNELTSH----------QCLMTNNSTWFFDNQGKPLEVKLDARWRSNSVRSVVLACER 236 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G GIA LP D ++V I+ + Y A RNF+ KA Sbjct: 237 GLGIAYLPRSSFGDALKGGSVVPILAPFWNREIATWIVY-----------ANRNFLPAKA 285 Query: 295 R 295 R Sbjct: 286 R 286 >gi|94314490|ref|YP_587699.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358342|gb|ABF12430.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 332 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 23/296 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S DW +F V G FT AE + +SS S ++ LE ++G++LF R R + +T+ Sbjct: 3 SIDWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGVRLFERTTRRVRVTQ 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +L+ + ++ +L E S + SG +RIAT ++G L + L L+P Sbjct: 63 RGQQLYDRVAPLFGELREISAEAASVSEEVSGTIRIATPYEVGSQHLSPTVNRLLKLHPS 122 Query: 122 IQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +++QL + D D+ I Y + + SS +++V I YAAP ++ Sbjct: 123 LRVQLDVSWDQPDL-IRHGYDLAFVMTDTGLSDSSFASKRVVLIERAFYAAPSLIRERGL 181 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQ 233 P + Q+L T G+L +D W + T + EPRI C N+ + Sbjct: 182 PRTPQDL--QGWPTVGNL-----DDTRWEFLRDGVETFAMDV-EPRI-CTH-NAEVR-FN 230 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V G G+ L V++ LVR++ + VY P ++AF Sbjct: 231 AAVDGLGVTRLSPRFVREALVEGKLVRVLPGYASSPLKVYVLMPARKLMPASVRAF 286 >gi|157371949|ref|YP_001479938.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323713|gb|ABV42810.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 298 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 146/301 (48%), Gaps = 17/301 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + +L +F V +GSFT AA L +++ +S + LE+E+G+ L R R L LT+ Sbjct: 2 LNLQRLAIFVAVVDAGSFTAAAVALGQTKAVVSFNVKQLESELGVSLLVRSTRRLALTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + E +++ SG LRI TT + G ++ L F L+P + Sbjct: 62 GERFYQRCLRLLQDAENVLDDVRRDHHGLSGVLRITTTPEYGAQVVVPALAAFSQLHPRL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181 +IQ + + D+ + D AIRL + SS R L + + A+P YL R P+ Sbjct: 122 RIQHVSSSYHADLISERFDVAIRLGQLADSSHHAAR-LDSFAILPVASPAYL--ARHPVG 178 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 S+ +L + I L NW + T +R ++ + L +S +++ + + Sbjct: 179 SLAQLAQAQWIAHSRL----SSPLNWQVITPERQAVLFKVEDAATLMGDSAAALLAFALH 234 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G+G+ALLP+++V+ L ++ D P ++Y YP K++AF + FL+A Sbjct: 235 GAGVALLPEWLVRPAIAEGKLCSLLADHQFPIQSIYALYPNTRHVPEKVRAFID--FLRA 292 Query: 295 R 295 R Sbjct: 293 R 293 >gi|160896327|ref|YP_001561909.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361911|gb|ABX33524.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 336 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 119/293 (40%), Gaps = 22/293 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V R G + AAE LHL+QS++S+QI LE VG+ LF R + L LT G + Sbjct: 13 LRAFSTVVRFGGVSRAAEALHLTQSAVSKQIQELEKWVGVPLFERERKRLRLTPAGERYE 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + +LE +EL S G L +++ L L +F YP I + + Sbjct: 73 RAVRALLGQLEAATLELITSDDS-RGALHLSSLPTFAAKWLIPRLPQFQQRYPQITLHFV 131 Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 DCAI + L+ R++ I A P P + Sbjct: 132 PYVHSYQFDSPGLDCAILFGDGHWNGAHAHYLVGRQVALIAPPRGAGPE--ARITTPQDV 189 Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +T D + E N ++ + P Q + + +I++ + G GI Sbjct: 190 ARCTRLRHVTIPDAWARWSEAHGVNGISPLAGP---------QFDQFQTIIRAVMAGMGI 240 Query: 242 ALLPDYIVKDNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL+P +V D + E + + + CYP N G L FRN++ Sbjct: 241 ALVPRCLVHDEIAAGLVNEPLPQHGYQSALGYWLCYPADRANHGTLGIFRNWL 293 >gi|56461290|ref|YP_156571.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180300|gb|AAV83022.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR] Length = 308 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 1/162 (0%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 ++ D +R F +VA+ GSF AA L + S++SR+I+ LE ++ ++LF R A + LT Sbjct: 11 NYSLDDMRCFCMVAQYGSFKQAAVALQMPLSTLSRRIAKLEQDLALRLFNRDAHRVQLTF 70 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + +R ++ ++ +L+ LQ+ + G +RI+ I+ +L + F+ YPD Sbjct: 71 AGQRYYRRSAPIFDELDNVAACLQQDRNEAKGTIRISAPINFSVQVLVHHFNAFMRQYPD 130 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI 163 I++ L L N+ IDI + D A R+ ++ I R+L I Sbjct: 131 IELDLKLSNQTIDIDEEAMDLAFRIGHH-SATHWIGRQLTNI 171 >gi|319781078|ref|YP_004140554.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166966|gb|ADV10504.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 302 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 3/198 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ ++ F VA SGS + AA +L SQ ++ R I LE +G+ LF R G LTE Sbjct: 4 IDWNLIKSFVTVAESGSLSAAARKLSASQPTLGRHIGELEQALGVTLFRRGRHGYELTEA 63 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS L V + + S G +RIA + + +L + P I Sbjct: 64 GSTLLERGKAVSEQASAFSLLALGSVEAIEGTVRIAASEVVAAYVLPEMTMRLGIEEPGI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++++ N+ ++ AD AIR+ KP Q + L+ RK+ I + A AA YL PL Sbjct: 124 EVEIVASNQVENLLRRDADIAIRMVKPAQ-NELMARKVCDIELCACAAKSYLDRRGRPLK 182 Query: 183 IQELDKHNLITF--GDLI 198 +L H+L+ F GD I Sbjct: 183 PADLVDHDLVGFDRGDEI 200 >gi|221196150|ref|ZP_03569197.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] gi|221202824|ref|ZP_03575843.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221176758|gb|EEE09186.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gi|221182704|gb|EEE15104.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 309 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 31/295 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR GSFT AAEQL ++Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 29 LQIFSTVARHGSFTRAAEQLCVTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 88 Query: 68 RVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V +E + ++E ++++ Q + + L++ T + + + F +PD+ +Q Sbjct: 89 PVVNESFARIEDISSKLTRQRTDL----ALKVPTCV---MRWMLPRIMRFQGEHPDLHVQ 141 Query: 126 LILDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183 + + +D S + D AI + + ++ L + AP + PL ++ Sbjct: 142 ITTAWQHVVDFSSEPFDAAI-VYGTSPGAGVVALPLFGERLTPVCAPELRQTA--PLDAV 198 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA--------TVDRPIGEPRISCLQVNSYLSIMQYC 235 +L +H L+ + +W A TVD P P L + + ++ + Sbjct: 199 DDLARHTLLH------PTRDHRDWRAWLEHAGVRTVD-PERGPTFDTLDLATNAAMQGFG 251 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V + L+ D + L R + V+ +F YPE+ + K++AF ++I Sbjct: 252 VAIGDVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPESGGSQQKIRAFSDWI 304 >gi|254460625|ref|ZP_05074041.1| transcriptional regulator, LysR family [Rhodobacterales bacterium HTCC2083] gi|206677214|gb|EDZ41701.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium HTCC2083] Length = 298 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 133/275 (48%), Gaps = 15/275 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 +SFDW+ R F V +GS + AA L+ +Q ++ RQI+ E E+G+ LF R R L +T Sbjct: 6 ISFDWNHARAFLAVVETGSLSAAARVLNQTQPTLGRQITAFEEELGVTLFERVGRSLKIT 65 Query: 61 EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 + G+ L R ++ ++ T Q +++ G +RIA + +LL + + Sbjct: 66 QTGADLADHVRAMADAAGRM-TLMASGQSQAIE--GIVRIAASELFAAHLLPPIVAKLRS 122 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 + P I++ ++ N D+ AD A+R +P Q LI R + YA+ Y++ Sbjct: 123 IAPKIEVDIVAANTVSDLLQREADIAVRNVRPEQ-PDLIARLIHDSSGRFYASKGYIQKR 181 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P + Q+ H+ ++FG+ + +LA + + + NS ++ + Sbjct: 182 GRPRNYQDFKTHDFVSFGN----TDQMLEYLAMLGLELTADQFKVGSSNSLVA-WEMVKQ 236 Query: 238 GSGIALLPDYIVKDNPNLVRIMED---VITPSFTV 269 G GIA + + + +P+L ++ D V+ P++ V Sbjct: 237 GLGIAPMSVDVARASPDLEVLLPDSDPVMFPTWLV 271 >gi|51597840|ref|YP_072031.1| DNA-binding transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|51591122|emb|CAH22787.1| probable lysR-family transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] Length = 303 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 30/252 (11%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA +L S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L + L YP + + L Sbjct: 66 YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q+S L R+L + M AA YL P Sbjct: 126 VAGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233 P M +F+WL RP + P Q+ N ++++ Sbjct: 181 ------------PSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228 Query: 234 YCVLGSGIALLP 245 + G+GIA P Sbjct: 229 WLKAGAGIAYAP 240 >gi|270263110|ref|ZP_06191380.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042798|gb|EFA15892.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 121/251 (48%), Gaps = 11/251 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V GSF+ AE++ LS + I I LE +GI+L R R +LTE GS Sbjct: 5 ESMSVFVRVVERGSFSAVAEEMRLSGTMIGLHIKALEQHLGIRLLNRTTRRQSLTEFGSA 64 Query: 66 LHRVTSEVYHKLETTQ---IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 ++ ++ +E T+ + L +S P G+L++A + G + L FL +P++ Sbjct: 65 YYQRCRQILADIEDTESIALALHQS---PRGRLKVACPVSFGVHALSPVTARFLTAWPEM 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L+L +K +D++ + D I++ + +SL+ L A+P YL + P+ Sbjct: 122 TLDLVLSDKMLDMAEEGVDVMIKVGELEHVNSLVAHPLAAYQSVICASPDYLAHSGTPVH 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q+L +H + F + W L + I P + VN+ ++ + G GI Sbjct: 182 PQDLTEHRCLGFA----HPLAGSEWTLQQGGKLIKVPVNIVMAVNNGEALRSAALNGLGI 237 Query: 242 ALLPDYIVKDN 252 + P+ ++ ++ Sbjct: 238 LMQPEVLLAED 248 >gi|218510469|ref|ZP_03508347.1| regulatory protein, LysR:LysR, substrate-binding [Rhizobium etli Brasil 5] Length = 308 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F VAR SFT AA +L ++ S++S I LE +G++L R R + T+ G + Sbjct: 7 NDLQAFLAVARDQSFTKAAAKLGVTASALSHTIRQLEARLGVRLLARTTRNVAPTDAGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L R + ++ EL E KP+G +RI T D + +++ L FL +P+I+++ Sbjct: 67 LMRAIGPHFDEIAARVQELGELRDKPAGTIRITCTDDSIEMVIRPLLAGFLQQFPEIKLE 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +D ++ D D IRL + I + R + A+P Y ++ P++ + Sbjct: 127 FYVDYGFSNVVEDRFDAGIRLGEAISKDMIAVRIGPDWRLIVVASPGYFQHNAPPVTPHD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + H + + + W T + + L NS L ++ + G G+A + Sbjct: 187 ITNHACVNIRHRASGPI--YAWEFTENGKEFTVKGDGQLVFNSTLHVLNGAIDGIGLAYV 244 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVY-FCYPEALKNTGKLKAF 286 P+ + + LV+++ D P F+ Y YP + AF Sbjct: 245 PEQLAMPYIADGRLVQVLSD-YCPYFSGYHLYYPNKRHASPAFSAF 289 >gi|116695449|ref|YP_841025.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113529948|emb|CAJ96295.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 310 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 128/294 (43%), Gaps = 14/294 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F R GSFT AA +LHL+QS+ISRQ++ LE +G KLF R R L LT G + Sbjct: 20 NLVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLEDFLGRKLFIREPRALRLTVSGQRY 79 Query: 67 HRVTSEVYHKLETTQIELQES--SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +EV +L E E V+ L +A + + L L F +P+IQ+ Sbjct: 80 ----AEVVQRLLVGCAEATEDVMKVRSHTALTVACSSGVAVLWLTPRLASFREAHPEIQL 135 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L +++ +S D + + L R+L + AP YL N R L+ Sbjct: 136 RLTVNDSLASLSPAEFDIGMYYLREGPPPGLAARRLYGEEVFPVCAPGYL-NGRT-LAPA 193 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243 L L+ D + M WLA P R + L N Y ++Q + G GI L Sbjct: 194 ALANETLLMLDDGQRQWMSWQTWLANQGLPDATLR-NVLTSNQYPILLQLAMEGHGIVLG 252 Query: 244 ---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 + D +++ LVR E + Y +P +AFR+++ +A Sbjct: 253 WRHMIDACLREG-LLVRASEASASLGGGYYAVWPRDRMEPAAARAFRSWLVRQA 305 >gi|251790758|ref|YP_003005479.1| DNA-binding transcriptional activator GcvA [Dickeya zeae Ech1591] gi|247539379|gb|ACT08000.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 308 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 25/299 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AAE+L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E++ L +LQ S K G L ++ + L L F YP I ++ Sbjct: 69 YFLDIKEIFSALNEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNTEYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ + D D AI + L KL ++ AP L Sbjct: 127 IQAVDREEERLSDDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCAPQLLAG--------- 176 Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238 +H L T GDL+ + +WLA R +G +I+ Q + ++Q + G Sbjct: 177 --EHPLKTPGDLVWHTLLHDASRRDWLAYT-RQLGIAQINVQQGPIFSHSAMVLQAAIHG 233 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G+AL + + + + LV DV+ Y ++ GK+ AFR +I +A Sbjct: 234 QGVALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gi|261378797|ref|ZP_05983370.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC 14685] gi|269144776|gb|EEZ71194.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC 14685] Length = 296 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++++L F +A++ SF A + L +S S++S + LET + ++LF R R ++LTE G Sbjct: 3 NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLRLFNRTTRNVSLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L S +Y + L + PSG +RI + +L LK L YP I+ Sbjct: 63 QQLFDQLSPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVLYPKLKPILNQYPKIR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++++D++ DI + D +RL + + + M A+P YL P +I Sbjct: 123 LEIVVDDRWADIVKEGFDIGVRLGNKVAKEMIAVPISAPLKMVLVASPDYLAQHGSPKNI 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H LI L + + W + + P+ S +N++L +Q G GI Sbjct: 183 DDLQQHRLIGI-KLSAEHGTEMQWEFKYKKELITFTPK-SHFSINNHLR-LQAVSDGLGI 239 Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 A + V D N LV ++ + +Y YP ++ K + + +KA Sbjct: 240 AWVAHMSVADELNSGHLVELLPEYAMTYEPLYLYYPSRRGHSNVFKLIVDALKVKA 295 >gi|90414488|ref|ZP_01222463.1| Hypothetical transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90324396|gb|EAS40958.1| Hypothetical transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 17/290 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V SF+ AE +++S +S++IS LE ++G++L YR R LTLTE GS Sbjct: 5 DDLVLFTQVIEHASFSKVAELNKITKSVVSKRISKLENQLGVQLIYRTTRKLTLTEPGSI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + ++ ++ + S SG +R++ G+ LL L +F +P + ++ Sbjct: 65 LYHRSKDINQVAQSAFDAITGYSEALSGNIRVSVPTISGELLLAEALSDFCQKHPGLTVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +DN +D+ D IR ++ SSLI R + A+ YL+ P + + Sbjct: 125 MSMDNHFVDLVAQNYDLVIRTGY-LEDSSLIARHIFNSRWVICASTDYLEKNGIPETPKA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239 L HN + + + F+WL + L+VN S + + + + Sbjct: 184 LQHHNCLGYTQ---QSTGPFDWLFIRN----NTETYTLKVNGNFSSDNAVALRKATLANN 236 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIA LP +V D+ L+ ++ + +Y YP K + +++A Sbjct: 237 GIAYLPTCLVFDDLKSGKLIEVLPEHSGKVVGIYAVYPYTKKPSKRIQAL 286 >gi|17932867|emb|CAD19474.1| hypothetical protein [Enterobacter cloacae] Length = 295 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 148/292 (50%), Gaps = 15/292 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F VA +GSFT AAE + L+++ +S I LE E+G+ L R R LTLTE G H+ Sbjct: 9 MFIAVADTGSFTAAAEAMGLTKAVVSFHIRQLEEELGVTLLLRTTRRLTLTEAGKLFHQR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + E Q +++ + +G+LRI TT + G ++ L EF L+PD++++ + Sbjct: 69 SVMLLRDAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQLHPDLRVRHVSS 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDK 188 + D+ + D AIRL + S + + + A P +L N P+ S+++L + Sbjct: 129 SLHADLIAERFDVAIRL-GTLADSRYHAALMTSFTILPVATPGWLAN--HPVNSLEQLAE 185 Query: 189 HNLITFGDLIPKCMEDFNW-LATVD-RPIGEP--RISCLQVNSYLSIMQYCVLGSGIALL 244 + I + + W + VD +P+ R L +S ++M + + G G+ALL Sbjct: 186 ADWI----IHERLTSPLRWQVRGVDEQPVSFEIKRAPRLYADSAQALMAFALAGCGVALL 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 P+++V+ D LV ++ +Y YP+A K++ F +F+ ++ Sbjct: 242 PEWLVRNALDAGELVSLLPAYTFAQQGIYAVYPDARHVPAKVRTFIDFMRVR 293 >gi|66045459|ref|YP_235300.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63256166|gb|AAY37262.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 317 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +E+ G +L +R R L LT G Sbjct: 29 RVFIAINDRGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLL 88 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L +L + +L YP L++ Sbjct: 89 RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSADLLI 148 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + ++I R L AAP YL P QEL Sbjct: 149 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGQCASVVCAAPAYLAVHGTPSRPQELTA 207 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F P+ P L N + +++ V G+GI+L P + Sbjct: 208 HNCLTY-SYFGKSLWEFT---RQQMPLSVPVGGNLSANDSVVLLEAAVAGAGISLQPVHS 263 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ +M + + ++ Y + L+ F +F+ Sbjct: 264 AAPLIASGKLIALMPEYQPRALGIHAIYTSRHHQSATLRTFLDFL 308 >gi|113969435|ref|YP_733228.1| LysR family transcriptional regulator [Shewanella sp. MR-4] gi|113884119|gb|ABI38171.1| transcriptional regulator, LysR family [Shewanella sp. MR-4] Length = 307 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 14/280 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +VF + GS AAE L +S+S ++R ++ +E G +L +R R L+LT+ G + Sbjct: 5 EAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTDAGEQ 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + S +P G LRI+ + + LL ++ +L YP + Sbjct: 65 VLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQASVN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D AIR+ + +LI R+L AAP YL C ++ E Sbjct: 125 FHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLA-CHSAITHPE 182 Query: 186 -LDKHNLIT---FGDLIPKCMED-FNWLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236 L +HN +T FGD++ + + AT + +G+ P L N + ++ + Sbjct: 183 NLTRHNCLTYSYFGDVMWRFTQTPIAAKATSTQEVGQIFNIPVKGNLSANDSMVVLNATL 242 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 G GIA+ P + K D+ LV ++ + S VY Y Sbjct: 243 AGEGIAMQPLWAAKPHLDSGALVPLLREYKPQSLGVYGVY 282 >gi|294142515|ref|YP_003558493.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293328984|dbj|BAJ03715.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 138/301 (45%), Gaps = 23/301 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V+A GSFT AAE L S+S +S+Q+S LE+ +G+ L R R LTEQG Sbjct: 11 VKAFTVIAEQGSFTKAAEVLICSRSHLSKQLSHLESYLGVTLITRTTRAQRLTEQGLAFF 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +++ G ++I LG+ ++ G + +F+L YP I ++L Sbjct: 71 SRCKAALDSIDQAVDIAVDNAQNLQGSIKINCVGGYLGEEVVAGLINDFILKYPGISVEL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ +D D R+ + ++ S L+ RKL+ I A+P YL++ P + L Sbjct: 131 DFSSQRVDLLVDQFDLVFRMGE-LEDSGLVARKLMDISNLTLASPKYLQSRGYPQDPKSL 189 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239 H IT G + NW VD GE ++ + +N ++ + G+ Sbjct: 190 KTHQCIT-GSI-------NNWSFYHVDN--GEHKLD-VHINGVFRCKNGRAMKHSALAGN 238 Query: 240 GIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 GI LP Y V++ LV + ED Y Y + L+ F F +D Sbjct: 239 GIVRLPQLYCVEELNRGELVSVFEDWRVADTPFYLLYHKDKFQPAILREFVGFTAEHFKD 298 Query: 297 W 297 + Sbjct: 299 Y 299 >gi|326317491|ref|YP_004235163.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374327|gb|ADX46596.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 324 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 12/182 (6%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GSF A L +S S++ + ++ LE E+G++L R R + LTE+G + H + L Sbjct: 20 GSFVAAGRALGISASAVGKAVAKLEQELGVRLLQRSTRRIALTEEGRQFHERCRRILDDL 79 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 + + + +++ P G+LR++ I + +LL L EFL +P +++ + +++ +D+ Sbjct: 80 DDARAMVSQAAAAPRGRLRVSVPI-VAYHLLLPRLPEFLERHPQVELDIDFNDRIVDLIG 138 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-----AAPHYLKNCREPLSIQELDKHNLI 192 + D AIR S L +L+++ + Y A+P YL P ++ +L H+ I Sbjct: 139 EGVDIAIR------SGDLPDSRLMSLPLRHYRSLLCASPEYLARRGTPAAVGDLADHDGI 192 Query: 193 TF 194 F Sbjct: 193 AF 194 >gi|126667107|ref|ZP_01738082.1| putative transcriptional regulatory protein (LysR family) [Marinobacter sp. ELB17] gi|126628513|gb|EAZ99135.1| putative transcriptional regulatory protein (LysR family) [Marinobacter sp. ELB17] Length = 267 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 6/244 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA +GSF+ A+E + SS+SR+++ LE +G L R R + LTE G + Sbjct: 7 IRYFVKVAETGSFSRASEHFGVPPSSLSRRVADLEAHLGTSLLKRSTRVVKLTEIGQNYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +LE T + + +P G+LRI++ + G+ + + F YPDI + + Sbjct: 67 AEVCHILSQLEATDEAVGQYQSRPIGRLRISSMVGFGETIFLPLMDRFSARYPDITLDIT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + ++ D D AIR +I +L+ A A+P YLK P + +L Sbjct: 127 LTDSLSVLNRDDVDLAIR-GGFAPDERVIATRLMDNRFIAVASPTYLKRFGNPHNPGDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246 H + F P+ WL VD + + + NS + G GI LLP Sbjct: 186 NHKGLYF--RTPQGPTP--WLCEVDGRLQDVSAPAAAISNSGHWLRDKAERGEGILLLPR 241 Query: 247 YIVK 250 ++++ Sbjct: 242 WVLE 245 >gi|330005616|ref|ZP_08305294.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|328536182|gb|EGF62563.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 308 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F V R SFT AA +L ++ S++S + LET +G++L R +R + T+ G Sbjct: 13 DLADLNAFRTVERLRSFTQAAVELGITTSALSHSVRNLETRLGVRLLNRTSRTVAPTDAG 72 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S L R ++++ E+ +P G+LRI D + +L L +FL YPD++ Sbjct: 73 SNLARRLEIGFNEIGEALDEINLLRDRPVGRLRINVLADGARLILSKLLPKFLQTYPDVE 132 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D+K +DI D IR + + + + A A+P YL + P+ Sbjct: 133 VEVAVDDKMVDIVSAGFDAGIRFGGTVPEDFVAVKLGPELRWVAVASPRYLYRKQAPVIP 192 Query: 184 QELDKHNLI 192 ++L HN I Sbjct: 193 EDLKSHNCI 201 >gi|323498906|ref|ZP_08103889.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323316018|gb|EGA69046.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 299 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L R R L LT+ G + Sbjct: 10 IRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEKQMGVTLLMRTTRMLKLTDAGKTFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 + + + ++ + E G+L+I LG+ ++ +F+ L+P I I L Sbjct: 70 QQCEKALNDIDQALLTAVEDIEVLQGELKINCVGGYLGEEVIAQVASDFMRLHPQITINL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ D D A R+ K ++ + I RKL+ I M A+P YL ++L Sbjct: 130 DFSSHRVDLIEDEFDIAFRMGK-LEDAGFIARKLMNIEMGTLASPDYLARNESLSHPKQL 188 Query: 187 DKHNLIT 193 + H +T Sbjct: 189 NSHQCLT 195 >gi|300312373|ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075158|gb|ADJ64557.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 133/289 (46%), Gaps = 8/289 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR+F + RS AA++L + S++SR++ E +VG +LF R+ G LT Sbjct: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +V L EL + K SG++R+ T G +L ++ F P I Sbjct: 62 GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++ + +++S AD ++ + +P+ S + + KL + YA+ YL + Sbjct: 122 TVDMLPMPRFVNLSKHEADISVSIERPL-SGNYVVTKLSDYVLKLYASRDYLAQHPPIHT 180 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L +H+ I + DL+ E+ + TV + S ++ G + Sbjct: 181 MDDLAQHHFIGYIDDLV--FSEELRYKDTV----APDAFRAFRSTSVVAQYTAACAGRAL 234 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP ++ + + L ++ I + + + ++ ++ A +++ Sbjct: 235 AILPCFLAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYL 283 >gi|260769775|ref|ZP_05878708.1| transcriptional regulator [Vibrio furnissii CIP 102972] gi|260615113|gb|EEX40299.1| transcriptional regulator [Vibrio furnissii CIP 102972] Length = 297 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 21/298 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA +G+FT AA+ L LS+ ++R + +E + +L +R R ++LT G + Sbjct: 7 MRSFVEVANTGNFTKAADNLTLSRLQVTRHVQEIEDWLKQRLLHRTTRKVSLTAAGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + +I E S +G +RI+ I L Q+LL ++ F L+P + I ++ Sbjct: 67 TRCEQILDQTAELEIRALEQSQSLTGSIRISAPIGLAQHLLLDTVEAFTELHPQVTIDIL 126 Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ + D D A+R ++P SLI R+L+ + A+P YL+ + +L Sbjct: 127 ASDRLSQLVDDRVDVALRFTQQP--DESLIARRLIQVDTVVCASPQYLQTHDPIIEPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 +HN + + W D R+S + + I++ L G+ LP Sbjct: 185 SRHNCFVH-------LTNHTWDLVRDNQHFSVRVSGTVRANDMEILRSAALHHKGVVWLP 237 Query: 246 DYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + NP LV+++ D +PS ++ Y L + + R FI A W+ Sbjct: 238 CDLA--NPCLRRGELVKVLADYHSPSSHLWAVY---LSRSYQTPLVRQFIDFVAERWQ 290 >gi|83310370|ref|YP_420634.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945211|dbj|BAE50075.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 301 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 19/292 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F + GS AA +L S +I+R ++GLE +G++L R R L T+ G Sbjct: 5 DELAIFIAILEVGSLAGAARRLRRSPPAITRCLAGLEDRLGVRLVERTTRRLAPTDAG-- 62 Query: 66 LHRVTSEVYHKLETTQIELQESSV-KP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R + H L L+ + +P G+LR+ + G+ + + +FL YP I Sbjct: 63 -RRFAEQARHLLSGYNEALRSAGADEPLRGRLRVTAPVVFGRRHVTPIIVDFLRAYPQIS 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+ + + ++D+ + D A+R+ + S+L+ R++ + A+P Y+ PL++ Sbjct: 122 IEAVFSDNNLDLIEEELDVAVRI-GTLADSTLVARRVGEVESVLVASPGYIAAHGLPLAV 180 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242 EL +H++I F P +E +R + PR+ QV + L+ + G GIA Sbjct: 181 DELAEHDVI-FTSGRPVLVEWRLIEGGRERNVRLTPRLMVNQVEASLAAARA---GLGIA 236 Query: 243 LLPDYIVKDN---PNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y V D+ +LVR++ + P V+ P + +AF NF Sbjct: 237 RALSYQVVDDLAAGHLVRVLPGSGALQP---VHLVVPGGRHMAARTRAFLNF 285 >gi|254506708|ref|ZP_05118848.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16] gi|219550289|gb|EED27274.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16] Length = 296 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 30/301 (9%) Query: 6 DKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL +V VA++ SFT AE+L +S+ ++R + E +G +L R R ++LT Sbjct: 2 DKLTAAKVMLDVAQTESFTATAERLEMSRPMVTRYVEAAENWLGARLLQRTTRKVSLTSA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118 G +L + H +E Q + E S+ P+ G +R++ ++ G + L L+ F Sbjct: 62 GEQL---LPNLQHWVE--QAQQMEESLMPTQAITGYVRLSVSMSFGFSQLMPALQAFRQR 116 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 YP I++ + ++ +D+ + D AIR + +LI R + AAP YL C Sbjct: 117 YPGIKLDIDAQDRAVDMVAERIDLAIRTTNE-PNPALIGRPFSVCYSKLVAAPEYLA-CH 174 Query: 179 EPLS-IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ 233 +P++ Q+L +H + FG I W T + +SC + N ++ Sbjct: 175 DPITHPQDLTRHACLGYKNFGRQI--------WQLTQGEQQHDVEVSCDVTANEATVLLH 226 Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GI++ PDY+ + D LV ++ + + +Y YP + ++A +FI Sbjct: 227 GSLAGLGISMQPDYLAQEWIDQGKLVWVLPEWQLMTLQMYLLYPSRKHLSPPVRALIDFI 286 Query: 291 F 291 Sbjct: 287 I 287 >gi|254507907|ref|ZP_05120036.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16] gi|219549143|gb|EED26139.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16] Length = 299 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 18/288 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V GSF+ AE +L+ S +S++I+ LE E+G++L YR R LTLTE G Sbjct: 4 DDLILFSQVVEMGSFSKVAETNNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V + SG ++++ G +L + EF +P + + Sbjct: 64 LTHGAKNVKQATLEAMDAVSGFGENISGHIKMSVPTISGDLILADAVAEFCNTHPGLSVD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +D+ D IR ++ SSLI R ++ A+P Y+ +P+ ++ Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYVARNSKPVKPED 182 Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L +HN + + E + N++ V ++ ++ + + G Sbjct: 183 LTQHNCLQYAYQTTGASEWEFKGKEGNYIVRVS--------GSFSTDNATALRKAALGGH 234 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 GIA +P +V N LV + + + +Y YP + K+K Sbjct: 235 GIAYVPRCLVYHDIRNGQLVDLFPEQVGKRLGIYAVYPFTRQPPNKVK 282 >gi|326573295|gb|EGE23263.1| LysR family transcriptional regulator [Moraxella catarrhalis 101P30B1] Length = 287 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 19/243 (7%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D LR VF V R GSF+ AA++L ++ S++S+QI LE ++G+ L +R R L+LTE Sbjct: 3 DNLRGMAVFSSVVRHGSFSGAAKELGITTSAVSQQIRSLENDLGVSLLHRSTRKLSLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ +++ E + + + + SG LRIATT +L + L L ++L+ + ++ Sbjct: 63 GESLYSSATQMVKAAEQGRDSVIQLKDELSGSLRIATTPELAKAYLLPALSDWLVEHDNL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + I+ ++D+ D D A+ L + Q + L T+ A+P Y+KN + + Sbjct: 123 SLN-IISRDNLDMIEDRVDVALLLSEQAQGIA-----LKTVEQMLIASPEYIKNHGDVEN 176 Query: 183 IQELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239 ++ L H +I G+ + +E D N +V R+S + N++ + G Sbjct: 177 VKALATHTMIICGEKPSESIEFKDANGKQSV-------RVSSRIITNNHAIALNLAAEGY 229 Query: 240 GIA 242 GIA Sbjct: 230 GIA 232 >gi|227328279|ref|ZP_03832303.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 304 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 2/184 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V +GS AA +S +++S+ +S LET +G++L R R +TLTE G + Sbjct: 14 FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLISRTTRSMTLTENGKRYFEKV 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + H +E + S K G L IATT G+ ++ + F +PDI I+LI + Sbjct: 74 RHIPHDIELAS-QAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKASFPDIDIELISTD 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++++ ++ D +IR+ + + LI RK+ +I AA YL P + +EL +H Sbjct: 133 RNVNHRLEGVDVSIRIEAQL-NDQLIARKIASIPFIFCAAQTYLDRAGTPQTPEELSQHA 191 Query: 191 LITF 194 + F Sbjct: 192 CLVF 195 >gi|163801378|ref|ZP_02195277.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4] gi|159174867|gb|EDP59667.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4] Length = 309 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 2/190 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G+ Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGAL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T + L+ ++ + + SG L I D G+N+L L EF+ +YP++ I+ Sbjct: 65 FLDKTIQALATLQEGLDQISSARGELSGPLHITAPSDFGRNMLLNWLDEFIDIYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQ 184 L L + D+ D AIR +P S+L+ L + + A+P Y+ + E Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEP-ADSNLVTLALCSANERILCASPEYVADNPELTKPD 183 Query: 185 ELDKHNLITF 194 +L++HN + + Sbjct: 184 DLNQHNCLCY 193 >gi|311105892|ref|YP_003978745.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760581|gb|ADP16030.1| bacterial regulatory helix-turn-helix protein, LysR family protein 82 [Achromobacter xylosoxidans A8] Length = 307 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 113/251 (45%), Gaps = 29/251 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA++ SF+ AA L + +S++SRQ++ LE VG++L R R + LT+ G Sbjct: 7 MELFVEVAKTRSFSRAAVILGIPKSTLSRQVAELERSVGLRLLSRTTRKVELTDAGRLYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ELQ+ P+G LR+ D G + L + EF YPD+ L Sbjct: 67 ERCQRIVAEAQIAHEELQKLVDTPAGPLRVNMPADFGTDFLAESFMEFSRRYPDVTFFLD 126 Query: 128 LDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 L N D DIS++ + + SS I R L + H YA+ YL+ E Sbjct: 127 LANPDHAQRVFQTCDISIEIGE--------LPDSSQIARLLGMLPAHLYASREYLEKHGE 178 Query: 180 PLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQ 233 PL +L +H I F G + P W T R I + VN + Sbjct: 179 PLHPSDLTRHECIEFRAKGAGQVTP-------WPLTDGRQHIEFTPGNRFSVNGVAMARR 231 Query: 234 YCVLGSGIALL 244 +LG+GI +L Sbjct: 232 LAILGAGIVVL 242 >gi|254420470|ref|ZP_05034194.1| hypothetical protein BBAL3_2780 [Brevundimonas sp. BAL3] gi|196186647|gb|EDX81623.1| hypothetical protein BBAL3_2780 [Brevundimonas sp. BAL3] Length = 298 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 6/291 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 ++ +L F V SF AA +L +S S++SR I LE +G++L R R + TE G Sbjct: 5 EFAELTAFMAVFDDRSFRKAATRLGVSPSALSRTIRALEDRLGVRLLNRTTRSVAPTEAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +L++ E +P G +R+ + +L EF + YPDI+ Sbjct: 65 LALVDRMRPAMAELDSAVQEAGARQGQPRGLVRLNLPRIAARLILTPLFAEFFVAYPDIR 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L++D+ D+ D IR + + R + M A+P Y P + Sbjct: 125 FDLVIDDSLTDVVARGFDAGIRSGALVHQDMIALRLTPDLRMAVVASPDYFSRRPPPRTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H +T+ + + W+ D PI + + VN I+ + G G+A Sbjct: 185 RDLHDHVGVTY--RWSETGALYRWVFEGPDGPIEMDIKNRITVNETDLILAAALEGVGVA 242 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP+ + LVR++ED P + YP + L+AF +F+ Sbjct: 243 FLPESFIAPWLQTGELVRVLEDWCKPFPGFHLYYPSRRQMPEALRAFIDFV 293 >gi|94313208|ref|YP_586417.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357060|gb|ABF11148.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 288 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/291 (22%), Positives = 139/291 (47%), Gaps = 8/291 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD R+F + R + AA L + Q+++ R+++ LE +G LF R + G LT+ Sbjct: 1 MNWDDARIFVALYRERTLRAAARALDIDQATVGRRLAVLEHALGSTLFLRTSNGYELTQV 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G R + Q + +G+++++TT L Q + ++ +PD+ Sbjct: 61 GKLAIRAAEAMEQSAHDLVRHTQGMDKRLAGEVKLSTTDALAQEYVVPAIESLHAQHPDV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L ++++ AD A+R KP ++ L+ R+L + + +A+P Y++ EP+ Sbjct: 121 SVVLDTTTHVLNLAKREADIAVRTVKP-RNPDLLARRLASWDVGLFASPAYIRRHGEPVP 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + H+L+ + K + + P+ + RI+ ++N+ L++ G GI+ Sbjct: 180 GERFLGHDLVVYQPHFAKARAP----SFIGEPLTDGRIAA-RLNTNLTLRAALKAGLGIS 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292 +P + + LVRI D + + + V+ + L++T +++ + I L Sbjct: 235 EIP-VPMGERDGLVRIWPDRTSGAPYEVWLVTHQDLRHTARVRVTIDEIVL 284 >gi|194367167|ref|YP_002029777.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349971|gb|ACF53094.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 294 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 124/296 (41%), Gaps = 25/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SF A +L LS S++S I LE +G+ LF+R R + LTE G +L Sbjct: 9 LAAFAAVARHRSFRRAGAELALSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAGQRLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E+ + P+G LRI T L L FL +PDI+++L Sbjct: 69 ERLQPALGQVHDALEEMNQFRAAPAGLLRINATRAAVPTQLGPRLARFLHAHPDIRVELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCREPL 181 ++ +DI + D +RL + + +V + M AP YL+ P Sbjct: 129 ENDGLVDIVAEGYDAGVRLHE------FVPEDMVAVPMGPPLRGLIVGAPDYLRRHPAPR 182 Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++L H I F G L E +D P L + +++ + Sbjct: 183 HPRDLAAHECIRFRFASGHLYKWQFEREGQALEIDVP------GRLTLGEQGTVVSAVLD 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A + + + D+ +V ++ED P YP+ + L+AF + + Sbjct: 237 GIGLAYVLEDTARPYIDSGQMVAVLEDWSEPFAGFALYYPKQRQMPAALRAFVDML 292 >gi|90409716|ref|ZP_01217733.1| Hypothetical transcription regulator [Photobacterium profundum 3TCK] gi|90329069|gb|EAS45326.1| Hypothetical transcription regulator [Photobacterium profundum 3TCK] Length = 312 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 143/304 (47%), Gaps = 23/304 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +K+ F V ++GSF AAE+ +S ++ SR I LET + ++L R R L T+ G Sbjct: 16 NKIAFFCSVIQNGSFREAAEEWGISAAAASRWIKELETLMAVELIKRSTRQLVPTDAGEL 75 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ S + +++T E++ + + G + I++T L+ + E++ ++P + + Sbjct: 76 LYQRFSTLLPEIDTICSEVESMADEQRGVITISSTPLFASYYLREIIAEYMEMHPKVNFR 135 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS-----LIQRKLVTIHMHAYAAPHYLKNCREP 180 L ++ + D Y D IR + + + LI+R L++ ++A AAP YL C P Sbjct: 136 LFIEAGETDPL--YVDFIIRAKATNRETEEKDSLLIRRPLLSEPLYACAAPSYLARCGTP 193 Query: 181 LSIQELDKHNLITFGDLIPK-----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 + +EL H + L+ C++ N T+ L+ ++ + Sbjct: 194 VEPEELGDHRCLYASSLVGGNRWYFCLDGVNRAVTIS--------DALECDNSEILRDLA 245 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 + G+G+A LP +++ + L + D + F + + + + K F++++ Sbjct: 246 IRGAGVAYLPYSVIRGALADGRLKVFLTDFVASRFDINLYFRPRHPMSVRCKTFKDYMLR 305 Query: 293 KARD 296 + ++ Sbjct: 306 RTKE 309 >gi|71279969|ref|YP_268177.1| LysR family substrate binding transcriptional regulator [Colwellia psychrerythraea 34H] gi|71145709|gb|AAZ26182.1| substrate-binding transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 308 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 18/250 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V G+F+ AA++L ++ S++SRQIS LE +GIKL R R L LTE G Sbjct: 13 MAIFVTVIEQGNFSKAAKKLGVTPSAVSRQISRLEDALGIKLLQRTTRQLALTESGKLTF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + ++ SG LR++ L +L+ EFL YPDIQ+ L Sbjct: 73 DYCKQMVESADQAVNASRSATSTVSGLLRVSAPKSLANKVLRPLFVEFLKCYPDIQLHLK 132 Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ +D D D I + PI+ +L+ K+ + A+P +L++ P +L Sbjct: 133 VTDRILDPIHDGVDFLIHINDYPIE--ALVNIKIGRVEQVLCASPEFLQSHTPPTHPDDL 190 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYL---SIMQYCVL--GSG 240 + I G+ M D W R I E + + +QV SYL S M+ + G G Sbjct: 191 KYLSCICLGE----NMVDNRW-----RFINENQQTTVQVAGSYLLNHSDMRRDAIEQGFG 241 Query: 241 IALLPDYIVK 250 I LPDYI + Sbjct: 242 IGPLPDYIAQ 251 >gi|17548239|ref|NP_521579.1| transcriptional regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430485|emb|CAD17169.1| probable transcriptional regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 302 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 21/251 (8%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S WD +R F +AR GS + AA +L + ++++R+ LE +G++LF R RG LT Sbjct: 13 SLQWDDVRHFLALAREGSLSAAARRLGVEHTTVARRADALEQALGVRLFDRLPRGWRLTA 72 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLL 118 +G L +E ++E L + G +R++ L +++ NL Sbjct: 73 EGGAL----AEQAGRMEQEAAGLARIAAGAGNLRGTVRVSAPPTLASHVIAPNLATLRRR 128 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P I + L+ + ++ ++ AD A+RL +P S++L R L + YA P L Sbjct: 129 WPGIDLVLLGEKRNANLMAHEADLAVRLSRPT-SAALATRPLGDLGYGLYATPEVLTRPE 187 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 + I + D + + M WLA G R+ L+ + +I + + G Sbjct: 188 A--------EWEFIGYDDTL-RHMPQQRWLAAY---AGARRM-VLRCSDLAAIHRAALTG 234 Query: 239 SGIALLPDYIV 249 G+A LP ++V Sbjct: 235 LGVAALPHFLV 245 >gi|238754640|ref|ZP_04615993.1| HTH-type transcriptional activator aaeR [Yersinia ruckeri ATCC 29473] gi|238707099|gb|EEP99463.1| HTH-type transcriptional activator aaeR [Yersinia ruckeri ATCC 29473] Length = 303 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 17/202 (8%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G Sbjct: 6 RMSVFAKVVACGSFTAAARQLGISVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGRIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +++ +L + P+G LRI + + QN+L E L YP + + L Sbjct: 66 YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKAYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q S L R+L ++ M AA YL P Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GTLQDSGLFCRRLGSMPMVVCAAKSYLAQHGTPEK---- 180 Query: 187 DKHNLITFGDLIPKCMEDFNWL 208 P M +F+WL Sbjct: 181 ------------PSDMVNFSWL 190 >gi|300312018|ref|YP_003776110.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074803|gb|ADJ64202.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 2/189 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 ++ LRVF + R+GSF AA QL L+ S+ S + LE + +L YR +R ++ T Sbjct: 7 IEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLATQLLYRSSRAISPTAA 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS+L + + ++ +L S+ G+LRI D L++ + EF+ P + Sbjct: 67 GSELAARLEQGFEQIGAALSQLDSSAAGSLGELRINVFADAAHLLIEPAIPEFVRQCPKV 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPL 181 ++ +++D+K IDI + D IR + ++ L H A AAP YL PL Sbjct: 127 RLTIVVDDKPIDIVSEGYDAGIRYGHYV-PEGMVTAPLTRAHRWVAAAAPAYLDRHGRPL 185 Query: 182 SIQELDKHN 190 ++Q+L +H Sbjct: 186 TLQDLQQHT 194 >gi|94312980|ref|YP_586189.1| putative LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356832|gb|ABF10920.1| putative transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 300 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 133/285 (46%), Gaps = 13/285 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V +G FT AA +L +S S +SR I+ LET +G++L R R + T G+ + Sbjct: 7 MKTFVTVVDTGGFTPAARKLDVSLSVVSRVITELETHLGVRLLTRTTRLVRPTATGATYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E ++ + P GKL I ++ G+ + + E+L YP++ + + Sbjct: 67 ENCRRILAEIEEAELATTGAHAAPRGKLSITASVLFGRRFVTPIVVEYLRRYPEVDAECL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L +++++ + D +R+ P+ SSSL + + AAP YL P + +L Sbjct: 127 LIDRNVNFVEEGIDVGVRI-GPLPSSSLQAIPVGRVRRVVCAAPDYLARFGTPATPDDLA 185 Query: 188 KHNLI-TFG-DLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 H +I T G +P+ W D R++ L ++ S + V G G+A + Sbjct: 186 HHTVIQTTGISTLPE------WRFMRDGETAPTRLTPRLATSTNDSAIGAAVAGFGLAAV 239 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y + D + L ++++ P ++ + E K++AF Sbjct: 240 LSYQIADEVRDGKLRIVLDNFEQPPLPIHVIHREGRHAMHKVRAF 284 >gi|260899478|ref|ZP_05907873.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] gi|308109207|gb|EFO46747.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ4037] Length = 293 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F V + GSFT AA L L ++++SR+I LE +G +LF+R R L+LT +G Sbjct: 4 DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V L++ + S++ GK+++ + ++ LQ L EF YP +++ Sbjct: 64 YYQDLQKVLTLLDSANQQASNESIEVKGKIKLGLLPETYEH-LQPILFEFQDQYPQVELD 122 Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++N ID+ D A+ + S ++ RK++T+ A+P+YL+ P +++ Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H I F P D W +P++ N+ I VL GI+ + Sbjct: 182 ALSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 P +VK ++ LV+++ T + YP+ Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPQ 270 >gi|238762596|ref|ZP_04623566.1| LysR-family transcriptional regulator [Yersinia kristensenii ATCC 33638] gi|238699241|gb|EEP91988.1| LysR-family transcriptional regulator [Yersinia kristensenii ATCC 33638] Length = 306 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 1/193 (0%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D + LRVF VA GSF A+ L + S++SR IS LE + ++L R R + LT Sbjct: 4 NMDLNTLRVFTAVAEKGSFVGGAKALEMPTSNVSRCISQLEERLNLQLIERSTRHMKLTP 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L+ + LE T+ EL ++ G LRI ++G L + EF L +P+ Sbjct: 64 AGQLLYTRVKPLLESLEQTEAELTSQQIQIKGPLRICIPNEIGPALFGTLIAEFALQHPE 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+I + + ++ D D AI + R + S I R L T AAP L +P Sbjct: 124 IEISCVTNLSGLESLRDDLDLAIIITRGQLDDSDYIARHLATFPCSVVAAPAVLARFGKP 183 Query: 181 LSIQELDKHNLIT 193 I++ IT Sbjct: 184 TRIEQFATLPCIT 196 >gi|27367830|ref|NP_763357.1| transcriptional regulator [Vibrio vulnificus CMCP6] gi|37675958|ref|NP_936354.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|27359403|gb|AAO08347.1|AE016813_99 Transcriptional regulator [Vibrio vulnificus CMCP6] gi|37200498|dbj|BAC96324.1| transcriptional regulator [Vibrio vulnificus YJ016] Length = 303 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +V GSFT AA++L ++ S++S+ I+ LE + +KLF R R L +T+ G K++ Sbjct: 13 LASFILVVNEGSFTAAAKKLDVTPSALSKLITRLEQALQVKLFERTTRKLLITQAGQKVY 72 Query: 68 RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + IE+ S +P+G L +A ++LQ + FL YP+IQ++L Sbjct: 73 DQSIAMVNAAQQA-IEISASDHSEPAGALTVAAPEAFLNSVLQPFVVPFLQQYPNIQLKL 131 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +ID+ D D A +L KP +L+ ++L H+ A+P YL P E Sbjct: 132 RAADGEIDLFRDNIDVAFKLTDKP--DENLVLKELSKTHLVLCASPDYLAQRGMPTHPTE 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +H+ + + +D W D +S VN + G GI + Sbjct: 190 LTEHDCLYLAE----NDKDNLWSFFKDEAFYSVAVSGRYAVNHSQMRLNGVKQGLGIGIF 245 Query: 245 PDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290 D++++D +V++++D + S + YP+ +L+ F +FI Sbjct: 246 HDFVIRDALERGEVVKVLDDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFI 297 >gi|312961144|ref|ZP_07775649.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311284802|gb|EFQ63378.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 305 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 9/291 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AA+ L L ++S++ I LE +G++L R R + T G+ Sbjct: 4 FNAMRVFTRIVELGGFAKAADSLQLPRASVTVLIKQLEAHLGVQLLQRTTRQVNPTLDGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ LE T+ S P G L I +G+ L+ L F YP I++ Sbjct: 64 AYYQRCVQLLTDLEETEAVFSTSRRNPRGTLSIDMPSGIGRFLVIPALPTFTARYPQIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ L+++ +D+ + DC +R + SL+ R L + A+P YL+ P ++ Sbjct: 124 EIGLNDRPVDLIREGVDCVLRGGLAL-DESLVARPLAMMDQLTLASPDYLERMGTPATLD 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H+++ + + + LA R I R++ VNS + C G G+ Sbjct: 183 DLAGHSMVEYVSTVSGKRFGLEFQLAGELRAINLAKRVA---VNSSDGYLAACQAGYGLI 239 Query: 243 LLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y +++ LV ++ + P + YP + + +++ F +++ Sbjct: 240 QAPYYHAIQELAQGTLVEVLPQLAVPKMALTALYPPHRQLSQRVRVFVDWL 290 >gi|300698064|ref|YP_003748725.1| LysR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074788|emb|CBJ54353.1| putative transcription regulator, LysR family; putative ttuA activator [Ralstonia solanacearum CFBP2957] Length = 309 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/294 (22%), Positives = 140/294 (47%), Gaps = 16/294 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A +GS + AA L ++ ++S++++ +E +G+ L R R ++LT +G Sbjct: 10 ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ L ++ +PSG LR+ T+ G+ + + E++ YPD+ +QL Sbjct: 70 LERARRILGEIDDLDQLLTQAKGRPSGLLRVNATLGFGRMHIAPAISEYVRAYPDVDVQL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ D D +R +P + +I RK+ A+P YL+ P + EL Sbjct: 130 QLSADPPPLNEDLFDVCVRFGEP-PDARIIARKVAPNRRLLCASPAYLQQHGVPQTPAEL 188 Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239 +HN I I + + + W T + + R + V L+ + + + G Sbjct: 189 ARHNCIG----IRQGSDAYGVWRLTSGKG-AKARTETVHVRGNLTTNDGEIAVNWALEGH 243 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI + ++ ++ ++ LV+++ TP +Y Y + + + +++ F +++ Sbjct: 244 GIVMRAEWDIERYLNSGRLVQVLPHYATPEADIYAVYHQRHQLSSRIRLFVDYL 297 >gi|182679698|ref|YP_001833844.1| LysR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635581|gb|ACB96355.1| transcriptional regulator, LysR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 311 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 23/299 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA +GSF+ AA L L+Q ++SRQ+S LE + +L +R L LT +G ++ Sbjct: 7 LRTFLRVAETGSFSAAAVDLKLTQPAVSRQVSALEAHLDTRLLHRSTTALALTSEGERMI 66 Query: 68 RVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +V +E L ES+ + SG++R++ LG + L L +P + + Sbjct: 67 PMALKVIEAVEA----LGESAGQVGTASGEVRLSVPAPLGL-YMSDRLAALLDHHPQLSV 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+ + D+ D +RL I SSLI R++ A P YL+ P +++ Sbjct: 122 ELLFREEPSDLVGQGIDLEVRLGN-IADSSLICRRIGWTTAFLVATPAYLEKRGTPRALE 180 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243 +L H+ I + + + +WL + RI+ L VN+ +++ + + G+GIA+ Sbjct: 181 DLSHHDCICYK----RGGDSRSWLFSNGADEVAVRIAPRLIVNNAVAVHRAVLAGAGIAI 236 Query: 244 L------PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 L PD + L+ ++ D + YP +++A +++ R+ Sbjct: 237 LSHILAVPDI---ETGRLISLIPDFPPARLPITLAYPSRRNMPFRVRAVIDYLVAAMRE 292 >gi|222109829|ref|YP_002552093.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221729273|gb|ACM32093.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 336 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 14/242 (5%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R F VAR +F AAE+L L+QS++SRQI LE EVG+ LF RH R + LT G +L R Sbjct: 27 RAFLAVARHLNFRAAAEELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTSAGGQLQR 86 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + +++ +++++ + S + I T L ++EF PDI I++ Sbjct: 87 AVAPALERMDAAVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRDNPDIDIRIDA 144 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELD 187 + +D+ D A+R P ++ QR L + A+P +L N P+ + ++ Sbjct: 145 TDTIVDLETADVDLALRSSVPGTQAAGAQR-LFGEQLAVVASP-WLLNSMPPIRTPADVA 202 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGI 241 + LI GD M F W+ T R + LQ +L I+Q + G G+ Sbjct: 203 QFTLIEAGDA--HRMPYFEWI-TWRRWFELHALGRLQPKRWLYFNYAQQIVQAALAGQGL 259 Query: 242 AL 243 AL Sbjct: 260 AL 261 >gi|91226411|ref|ZP_01261210.1| substrate-binding transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] gi|91189225|gb|EAS75505.1| substrate-binding transcriptional regulator, LysR family protein [Vibrio alginolyticus 12G01] Length = 291 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 140/296 (47%), Gaps = 29/296 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +KL +F VA++ +F+ AAEQL +S+S +S QI LE+E+ L R R + LT +G Sbjct: 8 EKLMLFAEVAQTLNFSRAAEQLGISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGES 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ + L + S + G +R+ + +L F L+P+++ + Sbjct: 68 IFAQAEDLKRRVMEMEKSLSQRSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEFE 127 Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + +++ D A R R P + ++I L+ H A+P YL+ P ++ Sbjct: 128 ILSSYQAFNLTETSVDFAFRATRTPPE--NMIAHHLLDYHHWLVASPQYLQEEGTPETLD 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238 +L +H +T + W P+ + +Q +LS + + + G Sbjct: 186 DLQEHQCLT-------TLHQKEW------PL---KTGTVQTQGWLSSNENRLLKESALSG 229 Query: 239 SGIALLPDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L Y V+ ++ LV+++ E+ VY YP+ + + K +AF F+ Sbjct: 230 NGIARLASYFVEQDVEHGRLVQVLSEETDHQHNAVYLVYPQLISQSAKTRAFIEFV 285 >gi|254251650|ref|ZP_04944968.1| LysR [Burkholderia dolosa AUO158] gi|124894259|gb|EAY68139.1| LysR [Burkholderia dolosa AUO158] Length = 309 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 8/286 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R+F VA GSF AA L + ++++S + LET +G +L +R R + LT G+ Sbjct: 5 DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTADGTL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + + G+L + + + ++ L YP +Q+ Sbjct: 65 LVERGRRLLAEADELDRLFRRRGRDVVGRLNVDVPSRIARRVIAPALPALFRRYPKLQLA 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ + DCAIR+ + + SSL+ R L + A+P YL+ C P Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGHFELINCASPDYLRECGVPEHPDA 183 Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L + H I + P +W VD P S + VN+ + + C+ G G+ Sbjct: 184 LANGHRAIGYAS--PTTGRALDWEYCVDGARHALPLPSRVIVNNAETYIASCIAGMGLIQ 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +P + V D+ LV +M V YP + +L AF Sbjct: 242 IPRFDVAHLLDSGALVEVMPRYRAAPMDVSAVYPHRRHRSRRLNAF 287 >gi|157157918|ref|YP_001462100.1| LysR family transcriptional regulator [Escherichia coli E24377A] gi|193064642|ref|ZP_03045721.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|194428345|ref|ZP_03060886.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|260843150|ref|YP_003220928.1| putative transcriptional regulator, LYSR-type [Escherichia coli O103:H2 str. 12009] gi|300926539|ref|ZP_07142328.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|301325776|ref|ZP_07219224.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|157079948|gb|ABV19656.1| transcriptional regulator, LysR family [Escherichia coli E24377A] gi|192927699|gb|EDV82314.1| transcriptional regulator, LysR family [Escherichia coli E22] gi|194413560|gb|EDX29841.1| transcriptional regulator, LysR family [Escherichia coli B171] gi|257758297|dbj|BAI29794.1| putative transcriptional regulator, LYSR-type [Escherichia coli O103:H2 str. 12009] gi|300417456|gb|EFK00767.1| LysR substrate binding domain protein [Escherichia coli MS 182-1] gi|300847419|gb|EFK75179.1| LysR substrate binding domain protein [Escherichia coli MS 78-1] gi|323159526|gb|EFZ45506.1| hypothetical protein ECE128010_4142 [Escherichia coli E128010] Length = 302 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 20/299 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++G+GI L +K D L ++ED T YP + L+AF +++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERSGFQIYYPNRQYMSCGLRAFLDYV 288 >gi|149187187|ref|ZP_01865485.1| Transcriptional regulator [Vibrio shilonii AK1] gi|148838723|gb|EDL55662.1| Transcriptional regulator [Vibrio shilonii AK1] Length = 297 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F +VA G+FT AAE L++S+S +SRQI LE ++G+ L R R + LTE G Sbjct: 11 VRAFVLVANLGNFTKAAEALNVSRSHVSRQIQSLEKQMGVSLLIRTTRTMKLTEAGKAFL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + G ++I +G+ L+ L +FLL YP++ I+L Sbjct: 71 SSCDGALQSIDQAVHAAIDDVEEVRGSIKINCVGGYIGEELVANYLSQFLLNYPEVNIEL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D+ + D AIR+ + S+ I R L I M A+P YL + +EL Sbjct: 131 DFSSHRVDLLEEEFDLAIRM-GVLPDSNYIARHLTNIEMQTLASPDYLAKYPKLTHPKEL 189 Query: 187 DKHNLIT 193 +H IT Sbjct: 190 KQHKCIT 196 >gi|99082439|ref|YP_614593.1| LysR family transcriptional regulator [Ruegeria sp. TM1040] gi|99038719|gb|ABF65331.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040] Length = 292 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 8/295 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AA+ L + +++ R I +E +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L+ + SG+L + T++ +L L EF L+PD+ Sbjct: 63 LDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMAPMLAPALAEFQQLHPDLV 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ + ++ + A A+R P Q +++Q V + YA+ Y++ Sbjct: 122 IRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQ-PFVAQRLALYASREYVERHGMLKG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++ H I + + + WL + I I + + ++ Q G+GI Sbjct: 181 QDDMVNHRFIASDNENTRAPFE-RWLRST---IPAENI-VFRCSDAVAGHQAIRAGAGIG 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + + +P+LV +M+ S ++ L T K+++F F+ A+ W Sbjct: 236 FVSLWEAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKSW 290 >gi|329297747|ref|ZP_08255083.1| LysR family transcriptional regulator [Plautia stali symbiont] Length = 307 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L V+A GSFT AAE+L +S++++S++I LE G+ L +R R + LT G Sbjct: 10 WVHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEQMAGVALVHRTTRSVRLTSAGE 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 KL E + ++ + +++ + +RI+ + + L + +FL YP +++ Sbjct: 70 KLVDDLREPFARIAQSFFSVRDEAGPVRSLVRISAPVAFARQQLVPIIGDFLRDYPQVRL 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL L ++ + + + D AIR + + + + L A+P YL P + Q Sbjct: 130 QLNLSDRLVSLGSEGFDLAIRHSQQLPETH-VALPLCETRTLLVASPDYLTRHGMPHTPQ 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 L +HN + + P+ +E W L + D + +I N+ SI + G G Sbjct: 189 ALQQHNCLYY----PRALESPQWRFRLHSDDSETVQVKIQGNFATNNSESIRDAVLQGLG 244 Query: 241 IALLPDY 247 IA+LPD+ Sbjct: 245 IAMLPDF 251 >gi|298717563|ref|YP_003730205.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361752|gb|ADI78533.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea vagans C9-1] Length = 301 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 8/279 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++ F VA +GSF+ AA Q + QS++S+QI+ LE +G+ L +R R + LT Sbjct: 1 MQNKLTAIQTFIRVAEAGSFSAAARQNGMKQSAVSQQIAALEEVLGVVLLHRTTRKMALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 QG + +V +E + +L+ S G+L + +GQ L+ +L F +P Sbjct: 61 AQGLHYLQQVRQVLGAMEELEQQLRPGSQPLHGRLHVQLPTGIGQRLMP-HLIAFQQAHP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + L+++ D+ + D AIRL + + L R L T+ A+P ++ Sbjct: 120 ALRLNIALEDRLSDLVAEGVDVAIRLSES-PPAMLAARSLATVETVLVASPEWIARNGTL 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L +H I F + + L + I P S + N+ ++MQ G G Sbjct: 179 QTPDDLMRHPHIRFSGI---ATDAPLQLVSESMRISVPVESVFRSNNSDALMQALEAGLG 235 Query: 241 IA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEA 276 I LP + LVR++ D P +Y +P+A Sbjct: 236 IGGLQTLPGADALASGRLVRVLPDWRLPDRYLYAVFPDA 274 >gi|240137786|ref|YP_002962258.1| Transcriptional regulator, LysR family [Methylobacterium extorquens AM1] gi|240007755|gb|ACS38981.1| Transcriptional regulator, LysR family [Methylobacterium extorquens AM1] Length = 314 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 13/302 (4%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L ARS GS+T AA L +S S++S+ + LE +G+ LF R R LTLT + Sbjct: 7 DRLTGIIAFARSASLGSYTAAAHSLGISPSAVSKSVQRLEQRLGLSLFTRTTRALTLTPE 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G LH + H+ E + + +P+G L++ +G ++L L F YP + Sbjct: 67 GRDLHERALRLLHEAEEIEQAAVAARSEPAGTLKVTAPFPIGVHVLAPALPRFRERYPKL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L L ++ D+ + D AIR+ + + S LI R+L + +A+P YL+ P Sbjct: 127 SIDLRLGDRFADLIEEGIDVAIRVGE-LADSQLITRRLAPHWLCTFASPAYLERRGTPRH 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +H + F + W + R + + + + ++ V G GI Sbjct: 186 PDDLIQHECVNF--RFQSTGQALRWPFRIGGRTVEITPQAGITTDFSDAVAAIVVAGGGI 243 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKAR 295 + P Y+ LV ++ + + +PE+ +++ +KA F +F A Sbjct: 244 GISPTYVAAPYVARGVLVPVLREFAVERSAIVALWPESRRSSPNVKALLAFLEEVFPAAP 303 Query: 296 DW 297 W Sbjct: 304 GW 305 >gi|226305456|ref|YP_002765416.1| LysR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226184573|dbj|BAH32677.1| putative LysR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 304 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 26/255 (10%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D +LRV VA+ GS T AA+ L +Q SIS + LE+EVG+ LF R RGL LT+ Sbjct: 2 LDLIRLRVLVAVAQEGSVTAAADSLGYAQPSISHHLRQLESEVGVPLFQRAGRGLRLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ L R +E+ ++ E++ + +G++R+A +L+ + F YPD+ Sbjct: 62 GAVLVRRATEILGHVDAAVAEVETYAGLRAGRVRLAAFPSALASLIPQAMAAFTSQYPDV 121 Query: 123 QIQLI----------LDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170 I L+ L N D+D+++ +AD K + ++L+ L Sbjct: 122 SISLVDAEPPKALAMLRNNDVDVAVVFAHADTPDVGLKHVTLTTLLDDPL---------- 171 Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230 + + + R + E+ + T+ P C + L +R PRI + + Y++ Sbjct: 172 -YLITSARNADAANEITDYAGETWIAGCPSCRA--HLLTACNRAGFVPRIE-FETDDYVA 227 Query: 231 IMQYCVLGSGIALLP 245 + GSG++ LP Sbjct: 228 VQALVASGSGVSTLP 242 >gi|71278365|ref|YP_267683.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144105|gb|AAZ24578.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 298 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 15/302 (4%) Query: 1 MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M+ +++L+ VF V G+ + AA+ + LS++ +S I LE ++GIKL R R + Sbjct: 1 MNISFEQLKSMVVFAQVIEQGTLSGAAKHIGLSRAVVSYHIKKLEAQLGIKLLNRSTRTI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 + TE G + ++ + + +++ +P G L+I +++G + L EF Sbjct: 61 SATEAGLEYYQYCRVIAEQASAANRQIENLKHEPVGLLKITCPVNVGLQTIVPALNEFRT 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 +YP I++ ++L ++ ++I + D AIR P+ S L KL T+ +P Y + Sbjct: 121 IYPKIELDVMLTDEVVNIIKEGIDLAIR-GAPLADSGLQAAKLSTLSTCLCGSPAYFEKF 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P EL+KH + + L +E L R + N+ + + Sbjct: 180 GFPKHPTELNKHQWVLY-KLTAGSLE----LTKGSRSFSIEMKGTISTNNAAARTAFVEG 234 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---F 291 G G+ +P Y K L+ +++D VY +P + KL+ +F+ F Sbjct: 235 GHGLGRIPVYDAKPRIKAGQLLSVLDDYDMRDIHVYGVFPPGNAESKKLRLLIDFLKAYF 294 Query: 292 LK 293 LK Sbjct: 295 LK 296 >gi|52425744|ref|YP_088881.1| LysR protein [Mannheimia succiniciproducens MBEL55E] gi|52307796|gb|AAU38296.1| LysR protein [Mannheimia succiniciproducens MBEL55E] Length = 299 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/294 (22%), Positives = 139/294 (47%), Gaps = 14/294 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L F+ + GS AA +L ++ ++S + LE +G+ LF R R + LTE G Sbjct: 6 YGYLTYFHEIVIEGSIAGAARKLEVAPPAVSNALKLLERHLGLPLFTRTTRKMELTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L T ++ L++ +++ + KPSG +RI T+I +++ + EF YPDI++ Sbjct: 66 RLFESTKDMLRGLDSVMESVRDLTEKPSGLVRITTSIISYLLVIRPHFAEFCERYPDIRL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ +++ +DI + D +R ++ + + ++ L + + YA+ YL+ +P +++ Sbjct: 126 EISVNDGIVDIVKEGFDVGMRFGDRLEQNVVAKKLLDPVRLGLYASESYLRKYGKPETLE 185 Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 +L +H L +T P ++D P + N+ + G Sbjct: 186 DLSQHKLLGYRFVTANRTYPLTFNQDGREISIDMPY------SVLTNNLTVELDTVRQGV 239 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L + +V D N + +++ T +Y Y + + GK++A +F+ Sbjct: 240 ALGQLFEPVVNALHDRKNFIPVLDAHWTQYPALYLFYMQHSQKAGKVRALIDFL 293 >gi|54296319|ref|YP_122688.1| hypothetical protein lpp0348 [Legionella pneumophila str. Paris] gi|53750104|emb|CAH11496.1| hypothetical protein lpp0348 [Legionella pneumophila str. Paris] Length = 289 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 16/291 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D++ F V F AA + +S +++SRQI+ LE E+ +L R R L+LTE G+ Sbjct: 4 FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQITRLEAELKAELLVRTTRKLSLTEIGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + +L +I + S + G L + ++ L L EF+ L P +QI Sbjct: 64 RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123 Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + D++ + D + + P L+++++ T A+P YL P + Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAENGIPKT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 EL KH IT P + F N +P+ L +N ++ + +LG GI Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFKNNEQIYVKPV-------LWLNDSRALCECALLGMGI 233 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L +YIV + + L+ ++ + S +VY Y + K++ F +F Sbjct: 234 IKLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284 >gi|90423499|ref|YP_531869.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105513|gb|ABD87550.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 300 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 14/298 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA SFT AA QL LS ++S + LE + ++LF R R + LTE G +L Sbjct: 8 ELAAFVAVADHLSFTRAAHQLGLSLPTVSLTVKALEDRLDVRLFNRTTRSVALTEAGERL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + KP G LR+A + +L +K FL YP+I++ L Sbjct: 68 LAEIQPLLQGVDDAIESVNRYRDKPIGTLRLAVSRTFATRVLAQLIKPFLDEYPEIRLDL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +D+ +IDI D IR+ ++ + + A+P YL P+ ++L Sbjct: 128 EIDDTNIDIVRHRFDAGIRVGDMVERDMKVISVFDPFRLIVVASPVYLAGKPAPVRPEDL 187 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 HN I + +P W+ V+R + I+ L VN + +M + G G+A Sbjct: 188 RGHNCIRYR--LPHDGSIQRWI--VERSGRQTEIAVEGSLIVNDFDLMMGAALDGVGVAY 243 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 L + +++ + L+R++ +Y +P + L F FI ++W+ Sbjct: 244 LSEPLIQGALADRKLIRVLPGWGHTLQGIYLYHPSRRQVPMPLLVFLRFI----KEWR 297 >gi|152981649|ref|YP_001353360.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151281726|gb|ABR90136.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 316 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 15/289 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH--- 67 F ++ R+GS A + + +++ISRQI+ LE +G++LF R R + TE G+ + Sbjct: 10 FVLLMRNGSLGRAENEGGIPKTTISRQIAKLEEILGVQLFLRSTRRIAPTEAGTAFYAHC 69 Query: 68 -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R+ +++ L T Q ++Q S G L + T L + + L +L YP + L Sbjct: 70 ERIIADLNAGLATAQTDVQNLSEGLRGDLYLLTNNHLSTSFVSRVLGLYLDSYPGVTCHL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++I D DC + +P +L+ + L + YA+P YL+ P ++L Sbjct: 130 DLVGEEITSIPDNVDCYV-CSQPPNQPNLVAKLLGNLTYRLYASPEYLRRNGTPTRPEDL 188 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALL 244 ++H I ++ W L + D +PR + + N Y + + G GI LL Sbjct: 189 EQHPRI----VLTTSPRAGGWHLRSQDASFHSQPR-TIVTTNDYWVTKTFAIDGYGIVLL 243 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 PD+ + D L+ ++ D VY Y + KL+A + + Sbjct: 244 PDFFTRPEIDAGILIPLLPDWHADKVPVYCVYQQQRYMGRKLRALVDLM 292 >gi|327188133|gb|EGE55354.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 293 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 8/240 (3%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 +V GS + AAE+L +S++ SR I+ +E G +L +R R L+LT G ++ Sbjct: 8 KVLLKTVERGSASAAAEELGMSRAMASRYIAAMEDWSGTRLLHRTTRQLSLTSAGERVLD 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + ++ ++ E+ + P G LR+ L + L L +F LYP I++ L + Sbjct: 68 MCRDIT-RVADAVTEVANHAETPHGLLRVTAPAILAEAQLIPLLSDFADLYPRIKVDLQI 126 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ ID+ D D AIR+ + SLI ++L YA+P YL+ P ++LD+ Sbjct: 127 SDRAIDLVQDRIDLAIRIANRLD-PSLIAKRLGQCSSLLYASPQYLEKYGIPTGPEDLDR 185 Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H +T+ L W L + + I Q N +++ + + G GIA+LP + Sbjct: 186 HRCLTYTHL-----GGSEWSLRSSESQIVIAVEGTFQTNDAVALRRAALSGLGIAMLPRF 240 >gi|302878706|ref|YP_003847270.1| transcriptional regulator, LysR family [Gallionella capsiferriformans ES-2] gi|302581495|gb|ADL55506.1| transcriptional regulator, LysR family [Gallionella capsiferriformans ES-2] Length = 311 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 1/180 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 L F A SGSF+ AA +L L+ +ISR ++ LE +G++LF R RGL LTE G + Sbjct: 6 NLESFVRSAESGSFSAAARRLSLTPGAISRNVAYLERNLGVQLFQRSTRGLALTESGERF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ ++ ++ +P+G L+++ + G L + FL YP + Sbjct: 66 LQSVQGGLDSIQGAIADVMVNAGQPAGMLKVSAPLSFGMEFLLPLMPAFLERYPAVTTDW 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 DN+ +D D D A + + R+L +H+ A A P +L R P EL Sbjct: 126 HFDNRPVDFIADGYDAAFGAGFEL-PPGMKARELARVHLIAVATPAFLHGKRRPKDPSEL 184 >gi|167589223|ref|ZP_02381611.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 322 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + + G LT Sbjct: 11 NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEEAMGTLLFDKSRSGGFVLT 70 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + +++ ++ + SG +RI +T G L L +F +P Sbjct: 71 AEGQRLVAYADAMETTVQSACDQVANTGHALSGHVRIGSTEGFGCFFLAPQLAQFRAAHP 130 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ + ++ AD AI L +P + + KL + YA YL + Sbjct: 131 HVTVDLLPVPHFVSLTKREADLAITLERP-ERGPYVCTKLCDYQLRLYATRAYLASHPPI 189 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +L H I++ D + E V R + + + Y + +Q G G Sbjct: 190 AGVGDLAAHTFISYVDDLAFSSELLYLERAVPGAAAGLRTTSV-IAQYFAALQ----GGG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP +I P LV ++ D + + + E L+ ++ A +++ Sbjct: 245 LAILPCFIAAQQPALVPVLADEVVVTRCFWLTCREDLRKLRRVTALWDYL 294 >gi|56710248|dbj|BAD80971.1| LysR family of transcriptional regulator [uncultured bacterium] Length = 312 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 23/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF VA +GSFT AA+ L S + +SR ++ LE V +L R R L+LTE G + Sbjct: 5 NSLRVFVRVADAGSFTTAAQALDFSTAQVSRLVADLEQHVQARLLQRTTRRLSLTEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + E + + ++P+G+LR+ LG L+ + + LYPD+ ++ Sbjct: 65 FLLRARQILDDMAEATAEARGAHLEPNGRLRLHCLTGLGV-LMTPLIARYCELYPDVVVE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ D D D I + + S + + + I A+P Y+ P ++ Sbjct: 124 LTLSQRNPDPLEDGHDVVISIAHELADSQFVAQTVGCIFSMPCASPAYIARRGLPTRPEQ 183 Query: 186 LDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237 L++H + +GD W+ ++ GE + Q N +++ Sbjct: 184 LNEHCCLRMIDPLYGD---------EWVFRDEQ--GEHCVVPGKTFQSNVPEAMVNASEA 232 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI+LLP Y + L+R++ + VY YP K++ + +F+ Sbjct: 233 GMGISLLPFYTATRSLREGTLLRLLGNHRLRERNVYALYPSKRFLDAKVRTWVDFL 288 >gi|21244755|ref|NP_644337.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21110450|gb|AAM38873.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv. citri str. 306] Length = 304 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 6/284 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W+ R F V GS + AA L L+Q +I R ++ LE + + LF R GL T+ Sbjct: 4 TISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTD 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L + Q G +RI+ + +G +L L +P Sbjct: 64 AAQALRSHARAMADIAAALQRAASRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQ 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++L+L N+ D+ AD A+R+ +P Q L+ R++ + + +A P Y+ P Sbjct: 124 LRMELVLSNRVQDLLHRQADVAVRMIRP-QQDLLVARRVGKVAIGLHAHPDYVDRHGLPQ 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L +H L+ F P F A P EP L+ +S L+ + G GI Sbjct: 183 RPEDLAQHALVGFDTDTP-----FLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGI 237 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + P L+ ++ + + V+ + L+ + A Sbjct: 238 GFCQAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSA 281 >gi|332530437|ref|ZP_08406380.1| transcriptional regulator, LysR family protein [Hylemonella gracilis ATCC 19624] gi|332040097|gb|EGI76480.1| transcriptional regulator, LysR family protein [Hylemonella gracilis ATCC 19624] Length = 298 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 6/284 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W+ R F V + GS + AA +L L+Q ++ R IS LE +G+ LF R GL T+ Sbjct: 4 TIGWELYRTFLAVLQEGSQSGAARELGLAQPTVGRHISALEESLGVTLFTRSQTGLLPTD 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L ++ + + G +R++ + +G +L L +P Sbjct: 64 LALSLREDLEAMHSTAAALERNARGLGAGIRGAVRVSASEVMGVEVLPPILVALREQHPG 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++I+L+L NK D+ AD A+R+ P Q L+ ++ + + +A Y+ +P Sbjct: 124 LEIELVLSNKVQDLVRREADIAVRMTSP-QQDVLLATRVGEVPVGLFAHQSYIAAHGQPE 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + +L +H LI F P F A+ +P+ + + +S L+ G+GI Sbjct: 183 HMADLAQHTLIGFDQETP-----FIRAASERQPLWKRENFAWRCDSDLAQRALLRAGAGI 237 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + LVR++ D T + E L+ + +A Sbjct: 238 GACQVELARRESELVRVLADQFVFPLTTWVVMHEGLRANPRFRA 281 >gi|330967373|gb|EGH67633.1| transcriptional regulator, lysr family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 301 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 135/300 (45%), Gaps = 20/300 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF+ AA L +S S++S + GLE+ + ++LF R R + LTE G +L Sbjct: 8 ELTAFVAIAEQRSFSGAARMLGVSPSALSHSMRGLESRLELRLFNRTTRSVALTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + LE ++ PSG +R++ + + L++ + FL P I I+ Sbjct: 68 FRRVQPLLGDLECAVNDVTSERNTPSGLIRLSASESSFKLLIRHVMPRFLKDNPQIHIEC 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185 + D + +DI D D +RL + + R I A A+P YL P++ + Sbjct: 128 VADTRLVDIVADGFDAGVRLFDDVPRDMIAVRFGPDIRFAAVASPEYLSRHPAPVNTPHD 187 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H I F G L ++ A++D + P + +++ + + + G GI Sbjct: 188 LKAHRCIRFRFASGTLFRWDLDHLGRSASID--VDGP----MTMDNINLMAEAALAGIGI 241 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LP++ V ++ LV ++ D P +T YP L+ F + RDW Sbjct: 242 AWLPEHQVAEHLQAGRLVHLLPD-WGPRYTGACLYYPANRHPPMALRMFAEAL----RDW 296 >gi|221209845|ref|ZP_03582826.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gi|221170533|gb|EEE02999.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 290 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 27/293 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR GSFT AAEQL ++Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 10 LQIFSTVARHGSFTRAAEQLCVTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +E + ++E +L + L++ T + + + F +PD+ +Q+ Sbjct: 70 PVVNESFARIEDISSKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185 + +D S + D AI + + ++ L + AP + PL ++ + Sbjct: 125 TAWQHVVDFSSEPFDAAI-VYGTSPGAGVVALPLFGERLTPVCAPELRQTT--PLDAVDD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--------TVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L +H L+ + +W A TVD P P L + + ++ + V Sbjct: 182 LARHTLLH------PTRDHRDWRAWLEHAGVRTVD-PERGPTFDTLDLATNAAMQGFGVA 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ D + L R + V+ +F YPE+ + K++AF ++I Sbjct: 235 IGDVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPESGGSQQKIRAFSDWI 285 >gi|116053777|ref|YP_788212.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115588998|gb|ABJ15013.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 306 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 1/186 (0%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF V SGS T AAE+L +S++ +SR ++ LE VG +L +R R L+LT+ G++L Sbjct: 8 RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 E+ + Q Q P G LRI +++ Q L F+ YP I L + Sbjct: 68 QCREMLAVADAMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ +++ + D A+R+ + +LI R+L AAP YL+ P ++L Sbjct: 128 NSQVVNLVEERIDLALRIANQLD-PNLIARRLGECRSVICAAPDYLRGHGTPRRPEDLAL 186 Query: 189 HNLITF 194 HN +T+ Sbjct: 187 HNCLTY 192 >gi|307822701|ref|ZP_07652932.1| transcriptional regulator, LysR family [Methylobacter tundripaludum SV96] gi|307736305|gb|EFO07151.1| transcriptional regulator, LysR family [Methylobacter tundripaludum SV96] Length = 300 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 23/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +VF + G+FT A +++LS IS+ ++ LE +G+ L R R L++TE G Sbjct: 5 NNTQVFCRIVELGTFTAVAREMNLSAMMISKYMAQLEESLGVALLNRTTRQLSMTEAGKI 64 Query: 66 LHRVTSEV---YHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + + ++ + +LE T+Q+ LQ VK G L+I+ ID G + + + YP Sbjct: 65 YYYRSKQLLDDFSELEEYTSQLGLQ---VK--GTLKISAPIDFGGLYMVPAIDAYQRAYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 D++I + L N +++S D +I + + ++ RK+ + YA+P Y+ EP Sbjct: 120 DVKILMTLHNSQVNLSEGSFDLSILVTDTL-DLGVVARKIAQTRLCTYASPDYIAEHGEP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 +I EL H + + D K D+ W+ D E +I N+ ++ Q L Sbjct: 179 QTIAELSSHRCLHYMDTPHK---DY-WVFNDDGE--EVKIKANWHFASNNGRALCQAAAL 232 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI P+ V + L+ I+ PS +Y Y + KL F +F+ Sbjct: 233 GMGITQAPELSVMNYLEQGKLMEILPAFRIPSLEIYATYLQRRFLPAKLATFVDFL 288 >gi|239814060|ref|YP_002942970.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gi|239800637|gb|ACS17704.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 350 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 1/210 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 + D+LR+F VA SF+ AA+QL L+++ +S + LE +G +L R R + LTE Sbjct: 1 MNTDELRIFSRVAELASFSRAADQLGLTRARVSVAVQQLEERLGTRLLQRTTRSVRLTED 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++ + + E + + +G+LR+ + ++L+ L EFL +P + Sbjct: 61 GARFLDRCKDYLAEGEQLATMFRSHAGGLTGRLRVDLPNAIARDLVIPRLPEFLARHPAL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ +D+ + DC +R+ + S L+ R L + M A+P YL+ P + Sbjct: 121 EVGISTSDRRVDLVHEGFDCVLRVGM-LGDSELVARPLGALRMANAASPGYLRAHGTPRT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD 212 + +L +H ++ F + + +L D Sbjct: 180 LDDLAQHQVVHFAQTLSSSDAGWEYLDPAD 209 >gi|167577769|ref|ZP_02370643.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 300 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 135/290 (46%), Gaps = 9/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +++VF +A SF+ A++ L + +++++ + +E +G +L R R + LT+ G Sbjct: 4 FQEMQVFVRIAERQSFSRASDDLQIPRATVTNLMKRMEARLGTRLLERTTRTVRLTQDGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + LE + ++++ P G LR+ L + + L +FL YP I++ Sbjct: 64 AYYRRCVRLIADLEEAEGAFRDAA--PKGLLRVNLQGTLARYYVVPALPDFLARYPGIRL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SS++ R++ + A+P YL EP + Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPADLA 180 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + + + + TVD + E R+ + + V V G GI Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y + D + L ++ P V YP++ + + +++ F ++ Sbjct: 239 VPRYRIADELAHGRLKIVLAAYPPPPMPVSVLYPQSRQLSSRVRVFARWL 288 >gi|161520595|ref|YP_001584022.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353217|ref|YP_001948844.1| LysR family glycine cleavage system transcriptional activator [Burkholderia multivorans ATCC 17616] gi|160344645|gb|ABX17730.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189337239|dbj|BAG46308.1| LysR family glycine cleavage system transcriptional activator [Burkholderia multivorans ATCC 17616] Length = 290 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 27/293 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR GSFT AAEQL ++Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 10 LQIFSTVARHGSFTRAAEQLCVTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +E + ++E +L + L++ T + + + F +PD+ +Q+ Sbjct: 70 PVVNESFARIEDISSKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185 + +D S + D AI + + ++ L + AP + PL ++ + Sbjct: 125 TAWQHVVDFSSEPFDAAI-VYGTSPGAGVVALPLFGERLTPVCAPELRQTV--PLEAVDD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--------TVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L +H L+ + +W A TVD P P L + + ++ + V Sbjct: 182 LARHTLLH------PTRDHRDWRAWLEHAGVRTVD-PERGPTFDTLDLATNAAMQGFGVA 234 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ D + L R + V+ +F YPE+ + K++AF ++I Sbjct: 235 IGDVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPESGSSQQKIRAFSDWI 285 >gi|253689850|ref|YP_003019040.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756428|gb|ACT14504.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 302 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 12/291 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS AAE L +S++ ++R ++ +E G +L +R R L+LT+ G K Sbjct: 9 VFVTIIDRGSMIAAAETLDMSRAMVTRYLAEMEAWAGARLLHRTTRKLSLTDAGEKTLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 E+ +IE SG LR++ + L Q L + FL +P + I L ++ Sbjct: 69 CREMLALTADMRIEADTDDATLSGLLRLSCSQSLAQGALGMAITTFLRHHPRVAIDLQMN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +++ + D A+R+ + +LI R L A+P YL P + +L H Sbjct: 129 NRAVNLVEERIDLALRITNELD-PNLIARPLARCESVLCASPSYLNEHGIPRQLTDLSIH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N +T+ K + F+ D P L N L ++ + G+GIAL P Y V Sbjct: 188 NCLTY-TYFGKSLWHFS---RDDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYSV 243 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LV ++ + + +Y Y + L+ +F+ DW Sbjct: 244 TPYLATGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFLV----DW 290 >gi|83749620|ref|ZP_00946604.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|207738749|ref|YP_002257142.1| hypothetical protein RSIPO_03437 [Ralstonia solanacearum IPO1609] gi|83723727|gb|EAP70921.1| Transcriptional regulators, LysR family [Ralstonia solanacearum UW551] gi|206592117|emb|CAQ59023.1| hypothetical protein RSIPO_03437 [Ralstonia solanacearum IPO1609] Length = 316 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 2/174 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V GSF+ AA L + +S +SR+++ LE +G++L R R + +T+ G Sbjct: 3 DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 S + EV + E+ E + KPSG+LR++ + + L L +FLL P++ Sbjct: 63 SAFY-AQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 +++L + N+ +D+ + D A+R+R + S+L+ R A+P ++ Sbjct: 122 RLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPSFVAE 175 >gi|218672696|ref|ZP_03522365.1| probable transcriptional regulator protein, LysR family [Rhizobium etli GR56] Length = 302 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 17/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +RVF V SFT AAE L +S+++ + LE +G++L R R ++ T G Sbjct: 4 FDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +E + + +P G LR+ L ++ + +L FL YP+I+ Sbjct: 64 AYYQRCLSILADIEDAEGAF--AGARPKGLLRVDVHGTLARHFVLPSLPSFLDAYPEIEF 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R+ P S ++ R+L + A+P Y+ P Sbjct: 122 HMSEGDRLVDLVREGIDCVLRVGTP-GDSDMVARRLAMLDEITLASPAYIAAHGLPQHPD 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H ++ F G L+P +F V R I P + + VN+ S + +G Sbjct: 181 RLTGHRMVGFRSSSTGTLLPL---EFIVDGAV-RNITLP--ATVAVNAAESYVSAARMGL 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +P Y + + LVR++ED V YP + + +++ F N++ Sbjct: 235 GLIQIPRYHAEKDLTEGRLVRVLEDFPLTPTPVSLLYPRNRQLSPRVRVFINWL 288 >gi|319796589|ref|YP_004158229.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315599052|gb|ADU40118.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 306 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 135/293 (46%), Gaps = 14/293 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A GS + AA +L +S ++S++++ +E +G+ L R R ++LT +G Sbjct: 9 ELGFFSTLAACGSLSAAARELGISTPAVSKRLAQMEARIGVTLLNRTTRRMSLTPEGELY 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ L E+ +P G LR+ T+ G++ + + +F +P++++QL Sbjct: 69 VEHARGILGAIDDMAQLLGEAKAEPRGLLRVNATLGFGRSHVAALISKFARKHPEVEVQL 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ D D IR P + S +I R++ + A+P YL P +L Sbjct: 129 QLSVNPPPLTDDAFDVCIRFGAPPE-SRVIARRIASNRRLLCASPAYLARAGHPKVPNDL 187 Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSG 240 +H I I + E + W + R + L N + + + G G Sbjct: 188 TRHRCIG----IRQGDEAYGVWRLSSGRGAAQHTEAIKTRGALSTNDGEIAVNWALDGHG 243 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I + ++ + + LV+++ + TP +Y YP+ + + +++AF +FI Sbjct: 244 ILMRAEWDIARYLRSGRLVQVLANYRTPDADIYAVYPQRHQLSARVRAFVDFI 296 >gi|319790928|ref|YP_004152568.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593391|gb|ADU34457.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 324 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 1/186 (0%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA GSF+ AA+ L ++ S+ SRQ+ LE E+G++L R R L LTE G++ Sbjct: 16 FLRVAELGSFSAAADLLGMTPSAASRQVKRLEKEIGVQLLQRTTRQLRLTEPGAEAFARC 75 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 E+ + Q S KPSG +RI+ + +L ++ +FL YP++ +QLI+ + Sbjct: 76 RELVAVAQGAMDIAQRFSKKPSGLVRISAPKAFARRVLHPHILDFLRRYPEVDVQLIVQD 135 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++ID + D +RL L+ R+L+ + A+P YL+ + L H+ Sbjct: 136 RNIDPIREGVDLVVRLTTE-PPEGLVARQLMPVAHILCASPRYLEQHEAIAHPRGLVAHS 194 Query: 191 LITFGD 196 ++ G+ Sbjct: 195 CLSLGE 200 >gi|82544636|ref|YP_408583.1| transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|81246047|gb|ABB66755.1| putative transcriptional regulator LYSR-type [Shigella boydii Sb227] gi|320183877|gb|EFW58707.1| Putative LysR-like transcriptional regulator [Shigella flexneri CDC 796-83] gi|332093679|gb|EGI98737.1| hypothetical protein SB359474_2533 [Shigella boydii 3594-74] Length = 302 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 24/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LT Sbjct: 1 MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E GS L+ + +++ E+ + + P+G L+I + L L F YP Sbjct: 61 EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARVAARIFLMPLLVGFTREYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174 DI+++L D+ +DI D +RL S ++++ ++++ + A P Y Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 +P +L H + F P + F+W + I + ++ + ++ Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229 Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289 ++G+GI L +K D L ++ D T P F +Y YP + L+AF ++ Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287 Query: 290 I 290 + Sbjct: 288 V 288 >gi|191168818|ref|ZP_03030593.1| HTH-type transcriptional activator TtdR [Escherichia coli B7A] gi|190901147|gb|EDV60921.1| HTH-type transcriptional activator TtdR [Escherichia coli B7A] Length = 310 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEF-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|328545095|ref|YP_004305204.1| LysR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326414837|gb|ADZ71900.1| LysR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 16/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + A ++ LS + +S++I LE +G +L R R + +TE G + Sbjct: 1 MEIFARVVSAGSMSAAGREMALSPAVVSKRIRRLEDRLGTRLLQRTTRQIAMTEAGQGFY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S + G L++ G+ + L FL PD+ + L Sbjct: 61 ERVVAILASVEEAESFVTRGSAQARGTLKVTAPTSFGRLHIAPYLGRFLEDNPDLAVNLD 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +DI + D AIR+ + + SSL+ R+L +H AAP YL EP SI++L Sbjct: 121 LADDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPVHRILCAAPSYLSRYGEPRSIEDLQ 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 ++++ I +D W R I R ++ NS + + + G G+AL Sbjct: 180 ENHVC-----IAAAAQD-PWRLMGPRGIEIVRTGAPVRTNSSEVVREALLAGVGVALRST 233 Query: 247 YIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 + + P L ++ P + ++ YP K++ F +F+ Sbjct: 234 WDI--GPELRDGKLRIVLPQYRASKDVGLHAVYPSRRFLPAKVRVFIDFL 281 >gi|330809407|ref|YP_004353869.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377515|gb|AEA68865.1| putative transcriptional regulator, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 301 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 116/272 (42%), Gaps = 14/272 (5%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR GSFT AA L ++QS++S+ I+GLE + I+L R R ++ T G +L + Sbjct: 16 FVTVAREGSFTRAAGALGVTQSALSQAINGLEARLQIRLLTRTTRSVSPTVAGERLLQAI 75 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++E L E KP+G +RI + + L L E L YPD+ ++ + Sbjct: 76 GNRFDEIEAELDMLTEMRDKPAGTVRITCGDHVLRTTLLPKLTELLHDYPDVNVEFDVCY 135 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLI-----QRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 DI D D +RL I + ++ + AY A H + L Sbjct: 136 GFRDIVADRFDAGVRLGDTIDKDMVAVPIGPPLRMAVVASQAYFAAHAIPKAPRDLMSHR 195 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + T G L E V R G+ L N+ I+Q V G G+A LP Sbjct: 196 CINQRMQTSGGLYVWDFERRGKQVNV-RVDGQ-----LIFNTSTHIVQAAVAGLGVAYLP 249 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 + + LVR++ED P Y YP Sbjct: 250 EEEFEPYLQEGRLVRVLEDWCPPFSGYYLYYP 281 >gi|294626698|ref|ZP_06705293.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598946|gb|EFF43088.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 304 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 6/284 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + W+ R F V GS + AA L L+Q +I R ++ LE + + LF R GL T+ Sbjct: 4 TISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTD 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 L + Q + G +RI+ + +G +L L +P Sbjct: 64 AAQALRSHARAMADIAAALQRAVSRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQ 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++L+L N+ D+ AD A+R+ +P Q L+ R++ + + +A P Y P Sbjct: 124 LRMELVLSNRVQDLLHRQADVAVRMIRP-QQDLLVARRVGKVAIGLHAHPDYADRHGLPQ 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++L +H L+ F P F A P EP L+ +S L+ + G GI Sbjct: 183 RPEDLAQHALVGFDTDTP-----FLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGI 237 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + P L+ ++ + + V+ + L+ + A Sbjct: 238 GFCQAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSA 281 >gi|289662181|ref|ZP_06483762.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 325 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 139/292 (47%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F VA GSFT AA+ L L ++S+S + LE +G +L +R R + LT G+ Sbjct: 27 ESLRAFLRVAELGSFTRAAQTLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTGDGTA 86 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ ++ Q Q + G+LR+ + + ++ + L FL +P +Q++ Sbjct: 87 FYQRSRDLLDDMDELQSMFQRERSQLRGRLRVDMSAGIARHFVIPALPAFLAQHPQLQVE 146 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC +R+ ++ ++L+ R L + + A+ YL P + + Sbjct: 147 ISGTDRRVDVVREGFDCVLRVGT-LEDTNLVARPLGAFRIVSCASAQYLARRGTPHCLDD 205 Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H+L+ T G P E ++ A P+ P + VN+ + + G GI Sbjct: 206 LAQHDLVHYVPTLGQRSPG-FEYYDGQAYQLLPMRGP----VTVNNGDGYLAAALAGLGI 260 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + LV I+ ++ V Y + +++AF +++ Sbjct: 261 IQAPASPLRAHLHSGALVEILPNLAVEPMPVTLLYAQRRHLPQRVRAFMDWV 312 >gi|207724934|ref|YP_002255331.1| hypothetical protein RSMK03392 [Ralstonia solanacearum MolK2] gi|206590161|emb|CAQ37122.1| hypothetical protein RSMK03392 [Ralstonia solanacearum MolK2] Length = 316 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 2/174 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V GSF+ AA L + +S +SR+++ LE +G++L R R + +T+ G Sbjct: 3 DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 S + EV + E+ E + KPSG+LR++ + + L L +FLL P++ Sbjct: 63 SAFY-AQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPEV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 +++L + N+ +D+ + D A+R+R + S+L+ R A+P ++ Sbjct: 122 RLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPAFVAE 175 >gi|319795554|ref|YP_004157194.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598017|gb|ADU39083.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 323 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F V +GSF AA+ L +S++S+SR I LE+ +G +L R R + TE G + Sbjct: 7 MQAFVAVVEAGSFVGAADALGISKTSVSRLIVDLESHLGTRLLQRTTRRVRTTEAGERFF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + LE + E+ ++ P G LR++ + G L L + YPD+++++ Sbjct: 67 ARASLLLSDLEEAESEVTWRTLTPHGVLRVSVPLSFGPRYLAPLLPLYRNQYPDVELEVS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ D D AIR + + R L + + A+P Y+ P + L Sbjct: 127 STDHLVDLVDDGFDLAIRGAW-QHGETYVARHLAPLRIVICASPGYVAMHGAPPTPDALA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +T + E + + T D + P ++ +S ++ + G GI +P + Sbjct: 186 AHNCLT--KISGAVSETWTFSRTGDT-VAVPVRGSMRADSDDILLTAALAGEGIVAMPTF 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D+ +LV ++ D P T+ YP + K++ F F+ Sbjct: 243 MAGDDIAKGDLVPLLLDWQYPPATLMAVYPTRRYLSAKVRTFVEFM 288 >gi|331669916|ref|ZP_08370761.1| HTH-type transcriptional activator TtdR [Escherichia coli TA271] gi|331062829|gb|EGI34743.1| HTH-type transcriptional activator TtdR [Escherichia coli TA271] Length = 310 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ I++ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIELVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|260774001|ref|ZP_05882916.1| LysR-family transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260610962|gb|EEX36166.1| LysR-family transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 300 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 16/302 (5%) Query: 6 DKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL +VF VA + SFT A++L +S+ ++R I +E+ + +L R R ++LT Sbjct: 2 DKLTAAQVFLDVAITQSFTATADRLDISRPMVTRHIETMESWLQTRLLNRTTRKVSLTTA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + +L +S +GK+RIAT++ G L +K FL +P + Sbjct: 62 GEQCLEAIKLWVEQAQQLEHQLMDSQ-SLAGKIRIATSMSFGFAQLIPAVKPFLAKHPQV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I + + +K D+ + D AIR+ SLI R + AAP YL Sbjct: 121 EIDIDVQDKTADLIAERIDLAIRIAAD-PDPSLIGRPIAKCDSILVAAPSYLAAHPAITQ 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241 +L +H + + K E W T + +SC L N +++ V G GI Sbjct: 180 PSDLTQHACLGY-----KNFERHIWHLTKGETLQSVEVSCRLTANEATTLLHAAVHGMGI 234 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296 AL P Y+ +V ++ D + ++Y YP + ++A + + + + D Sbjct: 235 ALQPTYLTSGALAKGEVVSVLADWQPKTMSIYALYPSRRHLSPAVRALIDHLADYFASHD 294 Query: 297 WK 298 W+ Sbjct: 295 WQ 296 >gi|239994447|ref|ZP_04714971.1| LysR family substrate binding transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 305 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 34/299 (11%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F VA + +F AAE++ +S+ +S QI LE +G+KL R R ++LT +G + Sbjct: 8 ERLMLFSAVAETLNFGAAAEKMQISRGYLSEQIRELELALGVKLLQRSTRQVSLTNEGKQ 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLR--IATTID--LGQNLLQGNLKEFLLLYPD 121 ++ T K+ + +EL+++ V+ +L IA T LL F +PD Sbjct: 68 VYADT----QKINRSVVELEQNLVREQTQLEGIIAITAPNMFAHYLLSELCFSFSQQHPD 123 Query: 122 IQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + L + D++ + D A R P Q ++ + L T AAP YLK P Sbjct: 124 VSFHLDTSYQRHDLNRGHFDLAFRSTNNPPQ--DMVAKPLFTYSHTIVAAPQYLKQAGTP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +LD H D +D NWL R + L++N L+++Q+ + G G Sbjct: 182 KVLSDLDAHQCFCGPD------QD-NWLIKGKRTAVK---GWLKLNDNLALIQHVLEGRG 231 Query: 241 IALLPDYIVKDNPN---LVRIMEDV----------ITPSFTVYFCYPEALKNTGKLKAF 286 IA LP Y+ K + LV + E++ I + ++ +P+ + ++KAF Sbjct: 232 IARLPSYVAKKHSKAGELVALFEEIKLGSTPSEPPIKSTSQLFVVHPQRPHQSLRIKAF 290 >gi|206577630|ref|YP_002235946.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206566688|gb|ACI08464.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 304 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS + AA L++ +++SR I LE+ +G++L R R LTLT+ G + ++ Sbjct: 17 GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAARRILEEV 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + + +P G+L I+ G+ + + EF+ YP I+++L+L +++ D+ Sbjct: 77 ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPQIRVRLLLSDRNADLVS 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 D+ D A+R+ + SS++ +L T+ + A A P L EP ++L +I Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254 +P F D+ I P + L V + S LG G+A L Y D + Sbjct: 196 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253 Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L ++E+V V+ Y KL+ F +F Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288 >gi|206562386|ref|YP_002233149.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198038426|emb|CAR54384.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 296 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 128/300 (42%), Gaps = 23/300 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 12 NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + +L VK L I+TT L L +F +PD ++ Sbjct: 72 YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTDAHPDYDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSI 183 +I D + D D AIR KP L L + ++A +P L P L+ Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVYAVCSPSVLTAPASPRALAG 187 Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q L D H DL P+ +LA + P+ L+ N + V G GI Sbjct: 188 QVLLHDAH------DLWPE------FLAAMPEPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235 Query: 242 ALLPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 AL + +V+ + R+ + + S Y YP ++ + R ++ A D + Sbjct: 236 ALATEPLVERDIAAGRLCKPFVFAFPLSMGFYLVYPAERRDDDAIAVMRAWMIQAASDGR 295 >gi|159185644|ref|NP_357405.2| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140778|gb|AAK90190.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 297 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 145/303 (47%), Gaps = 38/303 (12%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F V + F+ AA + S++ +S+ + LE ++G L R R +LTE G Sbjct: 6 RIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTEAGHTY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIAT-----TIDLGQNLLQGNLKEFLLLYPD 121 +R S++ +++ ++E + GKLRI+ D+GQ+L+ +F P+ Sbjct: 66 YRTASDILKEIDNLADLVREKNADLKGKLRISVPRTFIDADIGQSLI-----DFAKENPE 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----- 176 + ++++ D++ +D+ + D AIR+ + ++ S LI RKL ++A A ++ Sbjct: 121 LVLEIVADDRFVDLIEEGFDLAIRITR-LEDSGLIARKLSDFRVYAVATADFVAKHGPLD 179 Query: 177 -----CREPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230 R P I + HN + + P N +A I P ++VNS + Sbjct: 180 GPQDFARVPFIIDTNTRFHNTVRY--FEPDGGS--NSVA-----ISGP----IEVNSPQA 226 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 ++ G GIA++PD+I + + LV + +D I+ +Y YP K+++F Sbjct: 227 TLRAARAGLGIAMVPDFIARPHIQSGELVTLFDDYISKDRGIYAVYPHRRYLPAKVRSFV 286 Query: 288 NFI 290 +++ Sbjct: 287 DYL 289 >gi|330889952|gb|EGH22613.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 302 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 132/279 (47%), Gaps = 9/279 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F + SGS + AA+ S +S+ R ++ LE+ +G++L R R + LT++G + R T Sbjct: 10 FVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDEGEEYLRWT 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + + L G LR+ ++ GQ + + FL + DI ++L L++ Sbjct: 70 RRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLSEHQDINVELNLND 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + + + + D A+R+ + S+++ R++ + + A+P YL+ + + L +H Sbjct: 130 QIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLDTPKSLPEHA 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 IT + + I PR+ C QV + CV G G+ L Y V Sbjct: 189 CITLASHGRQWYFRHQGKELIQDII--PRLVCNQVRAA---SLACVQGLGVTRLMHYQVA 243 Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 D + L+R++++ T + YP AL+ + ++KAF Sbjct: 244 DELADGRLIRVLDNFETADLPIQLVYPHALQLSPRVKAF 282 >gi|325522927|gb|EGD01373.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 331 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 1/185 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + SFT AA L +S+++ +R + LET +G+ L R R L T +G + Sbjct: 8 MRIFARIVEMNSFTRAALSLGISRATATRTVQDLETALGMPLLVRTTRALRTTPEGDAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + ++ ++ PSG LR+ + ++ L F +PD+ + L Sbjct: 68 RRCLRITADVDELEASIRRAARHPSGPLRVDLPGPVASAIVLPALGAFHARHPDLMLMLG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D+ D DC+++L + + SS + R L + A+P YL C P ++ EL Sbjct: 128 VSARAADMVGDAVDCSVQLGE-LPDSSFVARPLGALERVTCASPAYLDRCGTPRTLDELG 186 Query: 188 KHNLI 192 H + Sbjct: 187 THRAV 191 >gi|319944085|ref|ZP_08018364.1| regulatory protein [Lautropia mirabilis ATCC 51599] gi|319742662|gb|EFV95070.1| regulatory protein [Lautropia mirabilis ATCC 51599] Length = 322 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 130/304 (42%), Gaps = 22/304 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ +L F + GSF AA +L L S++S + LE ++G++L +R R + TE G Sbjct: 13 DFAELAAFAAIVEEGSFRGAAARLGLRPSTVSHSLRALEEKLGVQLLHRTTRSVAPTEAG 72 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L +E + P+G++R++ + +L L+ F+ +PDIQ Sbjct: 73 QALFARVGPALAGMENAIEAVNAHRDLPAGRIRLSMPRCVASQVLLPRLRAFMERFPDIQ 132 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + DN +DI D D IRLR+ I + + A+P +L P + Sbjct: 133 LDIAADNGFVDIVRDGFDAGIRLRESIPGDMVAVPVTPDLQTMVVASPDHLALHPAPRTP 192 Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGE--PRISCLQVNSYLSIMQYCVL-- 237 EL +H I F + + + ++ A R G+ P S QV + + C L Sbjct: 193 HELHRHRCIGFRQIGSGNVYRWEFMRAALPTREAGDTSPGSSAAQVPGLMELNLDCALVL 252 Query: 238 ------------GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282 G G+A D I + ++ L++++ D +P + + Y + T Sbjct: 253 DDPELMLDAAARGLGLAYAMDAICRPWLEDGRLMQVLAD-WSPRYPGFCLYYPNRRITAP 311 Query: 283 LKAF 286 L+A Sbjct: 312 LRAL 315 >gi|212711164|ref|ZP_03319292.1| hypothetical protein PROVALCAL_02236 [Providencia alcalifaciens DSM 30120] gi|212686332|gb|EEB45860.1| hypothetical protein PROVALCAL_02236 [Providencia alcalifaciens DSM 30120] Length = 297 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 140/308 (45%), Gaps = 29/308 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + ++ F V SGSFT AAE L LS+S +S I LE + + L R+ R + LT Sbjct: 1 MQKNLKQITSFLQVVDSGSFTKAAEVLGLSRSMVSIDIKQLEKSLNVSLLVRNTRNIALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + ++E Q + +G LR ++T + GQ + + EF YP Sbjct: 61 EVGKHFYDDFKRIQLQIEEAFERNQNLATNITGTLRFSSTNEFGQRYVLPLVPEFCRQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q ++ D+ + D AIRL +++SSL RKL ++ A +L E Sbjct: 121 QLRLQYSFNSSFDDLLAEKLDIAIRLGN-LKNSSLKSRKLGEYAIYLVATAEFL----EQ 175 Query: 181 LSIQELD--------KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228 ++ +D H L+ D L + E F + P+ S + NS Sbjct: 176 YQVENVDDLANIPWITHTLLNLQDSQYALQNRHGEKF------ELPLLN---SQYESNSA 226 Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 +I Q + G A+ P ++V+++ N L+R++ D+ P + YP K +A Sbjct: 227 ETIRQLALASLGAAICPAWLVEEDLNAHRLIRLLPDLELPKQNIQLLYPNTQNLPAKTRA 286 Query: 286 FRNFIFLK 293 F +F+ K Sbjct: 287 FIDFLVKK 294 >gi|209547057|ref|YP_002278975.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538301|gb|ACI58235.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 306 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 10/289 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD L++F +V R S T AA +L +S S++SR+++ LE VG L R GL LT Sbjct: 8 LDWDDLKLFLIVVRCKSVTGAARELKVSHSTVSRRLARLEYTVGGALVERTKDGLLLTPA 67 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G R E+ + + + ++ + G +R+AT + L L E YPD+ Sbjct: 68 GLVTMRRAEEIENGVNALRSDVSNRD-EIRGTVRLATMEGIATLYLSERLVELSDRYPDL 126 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+ + I ++ AD + KP +SL + + +A+ YL P Sbjct: 127 DLELVTSPQSIRVARREADLFLSFFKP-HGTSLDSQLIGRFKTGLFASRTYLDRNGVPSD 185 Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H + + G+L+ +E WL + + P+I NS +S M G+GI Sbjct: 186 AANLSDHRFVGYIGELVQ--LESVLWLEEL---VPAPKI-VFSSNSMISQMFAASAGAGI 239 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP++ + LV ++ D + ++ L +++A + F+ Sbjct: 240 VALPEFARSLDVGLVPVL-DGLRGEREIWLSAHHDLAYLPRVRAVKQFV 287 >gi|77460541|ref|YP_350048.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384544|gb|ABA76057.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V+ SFT A E L L +S++S Q+ LE +G +L R R + T+ G L+ Sbjct: 7 LRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQDGLALY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + ++ +G++RI L + L+ L EF+ +P++++++ Sbjct: 67 ERSKDLLSHMDEIENLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPNLELEIS 126 Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ + DC +R+ +P Q S++ R L M A+P YL+ P ++++L Sbjct: 127 STDRRVDLLAEGFDCVVRIGAQPDQ--SVVARHLGDFSMINCASPAYLERYGVPQTLEDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H L+ + ++ E F + V R P + VNS + C+ G G+ + Sbjct: 185 AQHRLVHYVGVLGSRSEGFVYEQDGQVHR---VPMPGSVTVNSTDAYESACLGGFGLIQV 241 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + D+ +V ++ P+ + Y +++ F +++ Sbjct: 242 PRTGMNTYLDSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWL 290 >gi|77359925|ref|YP_339500.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874836|emb|CAI86057.1| putative transcriptional regulator (LysR family) [Pseudoalteromonas haloplanktis TAC125] Length = 300 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F +V + SF AAE +S ++S++IS LE ++G++L YR R L+LTE GS L Sbjct: 6 ELTLFSLVVDAQSFNKAAEVAGISTPALSKKISRLEKDLGVQLLYRTTRKLSLTEAGSSL 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + +L + SG +++ G+ LL + +F YP++ + + Sbjct: 66 YQHAKSIELQLSDALNSVSAYRGAISGSIKMTVPTISGELLLAQVVGQFCEKYPNVNVDM 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L+N ID+ D AIR + SSLI + ++ AP+Y++ EP ++ +L Sbjct: 126 RLENDFIDLVDKRIDLAIR-TGVLADSSLIAKPIIKSRWVVCCAPNYIEKFGEPSNLDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +HN + + E W T + N+ ++ Q + G GI +P Sbjct: 185 SRHNCLAYTYQNKGARE---WRFTHQGEEVSIAIKGNFSANTAQALRQNALSGYGIVYVP 241 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V + LV I+ + VY YP K+K +I Sbjct: 242 RCCVYEYLLTGELVAILSEYQPRELGVYAVYPYTRHQPEKIKLLIEYI 289 >gi|330992734|ref|ZP_08316678.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter sp. SXCC-1] gi|329760212|gb|EGG76712.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter sp. SXCC-1] Length = 304 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 92/188 (48%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VAR SF AA++L LS S++S I LE + ++LF+R R + TE G++L Sbjct: 9 ELTAFLAVARHQSFRIAADELALSPSTLSHMIRALEERLELRLFHRTTRSVAPTEAGAQL 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + LE T + +PSG LRI + + LL+ + F+ YPD+ + L Sbjct: 69 VAQLAPILSSLEQTLATVGMLKARPSGTLRINASRHAARALLRDIMPFFVHRYPDVHVDL 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + + IDI + D IRL + + + R A A+P YL P + +L Sbjct: 129 VTNGRFIDIVAEGFDAGIRLAQAVPQDMIAVRFGADGRFVAVASPDYLATHGIPRTPDDL 188 Query: 187 DKHNLITF 194 H I F Sbjct: 189 LHHACIRF 196 >gi|170737849|ref|YP_001779109.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820037|gb|ACA94619.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 300 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 6/285 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +W++ R F V GS + AA L ++Q + R ++ LE G LF R GL T Sbjct: 3 IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E L + + G +RI+ + + +L L + +P Sbjct: 63 EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPLLAQLRRDHP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+L+ ++ D+ AD A+R+ P Q +L+ R++ I + YA YL + P Sbjct: 123 GLVIELVPTDRIQDVLKREADIAVRMAPPAQ-DALVARRVGEIEVGLYARDDYLAHHGAP 181 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +I L H LI F + P F A P+ + L+ +S L+ + G G Sbjct: 182 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 236 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 I + K + LVR++ D + + E L+ + + +A Sbjct: 237 IGFCQSALAKRDARLVRVLPDALGMRLDTWVVMHEDLRTSPRSRA 281 >gi|153837436|ref|ZP_01990103.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] gi|149749236|gb|EDM60021.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AQ3810] Length = 293 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 11/274 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L++F V + GSFT AA L L ++++SR+I LE +G +LF+R R L+LT +G Sbjct: 4 DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V L++ + S++ GK+++ + ++ LQ L EF YP +++ Sbjct: 64 YYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEH-LQPILFEFQDQYPQVELD 122 Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++N ID+ D A+ + S ++ RK++T+ A+P+YL+ P +++ Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H I F P D W +P++ N+ I VL GI+ + Sbjct: 182 ALSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 P +VK ++ LV+++ T + YP+ Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPQ 270 >gi|332305426|ref|YP_004433277.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172755|gb|AEE22009.1| transcriptional regulator, LysR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 301 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 25/302 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F VA GSFT AAE + LS+ ++R + +E + ++LF+R R ++LT QG + Sbjct: 7 LQSFVEVAHCGSFTKAAEIIGLSRLQVTRHVQDVEQWLNLRLFHRTTRKVSLTLQGEEAL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ + + + + G +R+AT I LGQNLL ++EF+ L+P QIQ++ Sbjct: 67 EFAKKILSSVADLESRAHSHNHELVGTIRVATPIGLGQNLLFDAVEEFVALHPKAQIQMV 126 Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPLSIQE 185 L + + + D A+R + +P Q LI R+L+ I A+P Y+ K + +++ Sbjct: 127 LSDGLSQLVEERVDIALRYIDQPHQ--QLIARRLMHIDSVLCASPDYIAKQVTQDSPLEQ 184 Query: 186 ---LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L HN + + W AT D + +Q N I++ + G Sbjct: 185 PSDLAAHNCLIHSS-------NHQWRIVSATSDEKVSVS--GNIQANEMGVILKAALRGL 235 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 G+A LP + + L +++ + P ++ Y L + R FI A+ Sbjct: 236 GVANLPCDLANQYLRSQVLTQVLPEYRAPGHNLWAVY---LSRDHQQNVVRAFIDFLAQR 292 Query: 297 WK 298 W+ Sbjct: 293 WQ 294 >gi|227325998|ref|ZP_03830022.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 302 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 8/284 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS AA+ L +S++ ++R ++ +ET G +L +R R L+LT+ G K Sbjct: 9 VFVTIIDRGSMIAAADTLDMSRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLAR 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 ++ ++E SG LRI + L Q L + FL +P + I L ++ Sbjct: 69 CRDMLALTADMRVEADTDDATLSGLLRIGCSQSLAQGALGMAITAFLRRHPRVAIDLQMN 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 N+ +++ + D A+R+ + +LI R L + A+P YL P + +L H Sbjct: 129 NRTVNLVEERIDLALRITNELD-PNLIARPLSSCESVLCASPSYLNEHGIPRQLTDLSIH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 N +T+ K + F+ D P L N L ++ + G+GIAL P Y V Sbjct: 188 NCLTY-TYFGKSLWHFS---RDDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYSV 243 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LV ++ + + +Y Y + L+ +F+ Sbjct: 244 APYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFL 287 >gi|254464242|ref|ZP_05077653.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] gi|206685150|gb|EDZ45632.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] Length = 292 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 8/297 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AA+ L + +++ R I +E +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + L+ SG+L + + L ++ LK+F ++P + Sbjct: 63 QDLLRVAQATDDQFSQLVGRLKGQGDDVSGELVVTSLASLAPMMVPA-LKQFQDMHPGLI 121 Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+ + + + A A+R P Q +++Q + + YAA Y Sbjct: 122 IRYLTGERLFRLEYGEAHVAVRAGNAPDQPDNVVQ-PFMKQQVGLYAAKTYADKYGLLKG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++++ H + D + WL + P C + + ++ G+GI Sbjct: 181 VEDIPNHRFVGQDDEGSRA-PFARWL-RANAPAEAIAFRCTDGATLKAAVRS---GAGIG 235 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 + + + P+LV +M ++ L T K++AF F+ + +DW+ Sbjct: 236 FMAAWEARQEPDLVEMMAPQEDWEGALWLVTHVDLHRTTKVQAFLKFLKEQVKDWQL 292 >gi|49083966|gb|AAT51162.1| PA0056 [synthetic construct] Length = 307 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 1/186 (0%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF V SGS T AAE+L +S++ +SR ++ LE VG +L +R R L+LT+ G++L Sbjct: 8 RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 E+ + Q Q P G LRI +++ Q L F+ YP I L + Sbjct: 68 QCREMLAVADAMQATGQTRRDNPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ +++ + D A+R+ + +LI R+L AAP YL+ P ++L Sbjct: 128 NSQVVNLVEERIDLALRIANQLD-PNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186 Query: 189 HNLITF 194 HN +T+ Sbjct: 187 HNCLTY 192 >gi|298487434|ref|ZP_07005480.1| LysR-family transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158053|gb|EFH99127.1| LysR-family transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 298 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 8/285 (2%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +ET G +L +R R L LT G Sbjct: 8 RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + + +P G LRIA + L +L + +L YP + L++ Sbjct: 68 RCQRLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 N+ +D+ + D AIR+ + ++I R L A+P YL P S QEL Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + +F P+ P L N + +++ V G+GI L P + Sbjct: 187 HNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ ++ D + ++ Y + L+ +F+ Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 287 >gi|222087319|ref|YP_002545856.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724767|gb|ACM27923.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 291 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 17/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V GSF+ AA+ +S + +QI +E +G +L +R R LTE G + Sbjct: 1 MAMFVRVVEHGSFSAAADAAGVSPTMAGKQIRAIEAHLGARLLHRTTRRQQLTEIGRLYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V ++ E +P G LRI + + G + L L ++L +YP + + ++ Sbjct: 61 ERCKQVLADVQLADASASELQAEPRGLLRIVSPVTFGSHRLMPALSDYLAMYPAVSVDVM 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 LDN D+S + + AIR+ + L+ R L A+ YL+ P+ ++L Sbjct: 121 LDNGVPDLSREGCELAIRI-GSVTEVDLVARPLQPYRRIMAASASYLERRGTPVHPRDLS 179 Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + D D W + V + L+V + + G+GI Sbjct: 180 AHDCLGLSYWRHRDQWHLFGPDGEWRSDVSGRLSADNGDALRVAA--------LNGAGIV 231 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 L P+ ++ D+ LV+++ + + +Y Y + T KL++ +F+ Sbjct: 232 LQPEVMLADDLARGRLVQVLPEWTPVASPMYLLYAVDRRPTAKLRSMIDFLL 283 >gi|221370125|ref|YP_002521221.1| Transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221163177|gb|ACM04148.1| Transcriptional regulator [Rhodobacter sphaeroides KD131] Length = 318 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 22/296 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R F VA GS + A + + QSS++R ++ LE VG+ L R R +TLTE+G + Sbjct: 20 DRMRTFVRVAERGSLSAVARDMRIGQSSVTRHLNELERAVGVALLSRTTRRVTLTEEGHR 79 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + E + + SG +R++ T LG + + F +P+I++ Sbjct: 80 YYLQAVQILRLVAEASDEARRAGAASSGLVRLSCTAALGVRHIGRLIHRFQDRHPEIEVD 139 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ID+ + D AIRL + S L R L A+P YL P + + Sbjct: 140 LGLTDERIDLVREGVDLAIRL-GTLGDSRLKLRPLGRSRRILVASPGYLDRRGRPQTPAD 198 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237 L++H I FN T++ P G R+ L+V+ L+ + Sbjct: 199 LERHEGIRM----------FNIAGSERLTLEGPDGTTRVVPFGGRLRVDHGLAAREAYRA 248 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ ++V D + L RI+ D PS + +++ F+ Sbjct: 249 GRGLGPAHLWLVDDLLTDGQLERILPDHALPSIPLSLLIAPERARIARIRLMVEFL 304 >gi|206580207|ref|YP_002237685.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206569265|gb|ACI11041.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 296 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 141/290 (48%), Gaps = 14/290 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F +AR GSF+ A + ++ SSI R+I LE + LF R RG+ LTE G Sbjct: 8 ENLSLFVEIARCGSFSAVARRHGVNPSSIMRKIDMLEAVMKAPLFTRSTRGIHLTEIGDA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V L + E+ + + +G LRI+ + + L EF YPD+ + Sbjct: 68 LFTRAVGVLEALNDMRDEIVSLNEEVTGTLRISCLPTFAKLHIFPWLPEFKSHYPDVDLV 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + S++ D A+R+ K +++SSL K+ A A+P Y++ P E Sbjct: 128 LDLTEQLEIPSIERLDAAVRIGK-LKNSSLYATKIAHQTWIACASPRYIEQYGFPSGPTE 186 Query: 186 LDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+++ + D P + +W +D GE R+ ++ N + ++++ + G GI L Sbjct: 187 LAGHHILDKYHD--PHSI---SWSRIIDTQGGEYRLY-MRCNDFEALLKAAISGLGIVFL 240 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEAL-KNTGKLKAFRNFI 290 P+++V + LV I +D ++F AL + T KL AF F+ Sbjct: 241 PNWVVGQDIKAGRLVNIFDDPQQKVDDIHFL--RALPRMTPKLAAFLQFL 288 >gi|89899718|ref|YP_522189.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344455|gb|ABD68658.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 306 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 7/277 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MSF D + VF VA SFT AA+ L L ++S+S + LE +G++L +R R + LT Sbjct: 1 MSF-LDHMLVFSRVAELLSFTQAADSLGLPKASVSNAVQQLENRLGVRLLHRTTRKVVLT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G + + ++ Q Q +SS G++R+ + + + + L + L + Sbjct: 60 HDGQSFYERCKDALSDMDELQTMFQLQSSNALKGRIRLDMSTVVARQAVLPRLPDLLQQH 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P +QI++ + +D+ + DC +R K + LI R + + M +P Y+ Sbjct: 120 PQLQIEISSTERRVDLVREGFDCVVRAGK-VTEPGLIARPVGDLRMANCVSPGYMARFGV 178 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 P S+++L KH L+ + + + F V I P + VN+ + C+ Sbjct: 179 PHSLEDLAKHTLVHYTATLGAKVSGFEC-TQVGEEIAIPMQGPITVNNAEAYQAACLASL 237 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 GI +P V++ LV ++ P + Y Sbjct: 238 GIIQVPFVGVRELIAQGQLVEVLTGWTAPPMPLSLVY 274 >gi|71282083|ref|YP_267547.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71147823|gb|AAZ28296.1| transcription regulator, LysR family [Colwellia psychrerythraea 34H] Length = 299 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 21/304 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++FDW+ +R F V A G+ + AA+ L L+Q ++SRQ+S LETE+ I LF R + L LT Sbjct: 6 VNFDWNHIRAFLVTAEEGTLSAAAKALGLTQPTLSRQVSALETELCITLFERVGQRLVLT 65 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ----NLLQGNLKEFL 116 G KL E + +E + S K+ + + G+ +L + + Sbjct: 66 SSGLKLL----EHARGMGDAALEFSLAVTGQSQKIEGSVIVSAGELTAAYMLPKIISKLR 121 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 P I I++++ N+ D+ AD AIR P Q + LI +K+ + Y P YL Sbjct: 122 REEPGIDIEVVVTNEASDLKRREADIAIRSFHPTQ-NDLIAKKIGEEVIWLYGTPEYLDQ 180 Query: 177 CREPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 S EL +I F + + + W + + S + L + Sbjct: 181 LPTIPSFSELKDIQIIGFDRSNSLTDVLNKQGW------QLSKKNFSLITSFQLLQ-LAL 233 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFL 292 C G G+ P+ + PNLVR E + P V+ + L+ + +++ +FI Sbjct: 234 CKEGQGVIFYPEQMGDQEPNLVRAYEH-LGPVMKLPVWLVCHQELRTSLRVRRVFDFIAT 292 Query: 293 KARD 296 + D Sbjct: 293 ELSD 296 >gi|254236795|ref|ZP_04930118.1| hypothetical protein PACG_02808 [Pseudomonas aeruginosa C3719] gi|126168726|gb|EAZ54237.1| hypothetical protein PACG_02808 [Pseudomonas aeruginosa C3719] Length = 317 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT A++QL+ + + +SR ++ LET + +L R R + LTE G + Sbjct: 6 NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+GKL++ + +GQ+ + + + Y D+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D AI + + S I +++ + A+P YL+ P EL Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H+ + L+ + WL D P G+ +S QVN ++ + G GI Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y ++ LVR++ V+ YP K+K + ++ Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVFALYPSRQYLDAKIKTWVEYL 291 >gi|311108411|ref|YP_003981264.1| HTH-type transcriptional activator TtdR [Achromobacter xylosoxidans A8] gi|310763100|gb|ADP18549.1| HTH-type transcriptional activator TtdR [Achromobacter xylosoxidans A8] Length = 301 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 142/307 (46%), Gaps = 23/307 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L++ + R+G + AA +L ++ +++S++++ +E +G++L R R L+LT +G Sbjct: 5 NELQLVVELVRAGGMSAAARELGVTPAAVSKRLAQIEARLGVRLVNRSTRRLSLTAEGEV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++E + P G L++ + G++ + + EF YP++ +Q Sbjct: 65 YLENARRILGEIEDLDQLIASRQDSPRGLLKVNAPLGFGRSYIAPAIAEFAQAYPEVSLQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D D D A+R + + LI RK+ A+P YLK P++ + Sbjct: 125 LQLTDSPADFVQDAFDVAVRF-GDLPDTRLIARKIAPNRRLVCASPGYLKTHGVPVTPHD 183 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238 L +H I ++ + + W T R R ++V LS + + + G Sbjct: 184 LARHQCI----VLRQNEAAYGLWRFTKGR-----RSETVKVRGNLSSNDGEVTLTWGLAG 234 Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FL 292 GI ++ + + LV+++ED P +Y +PE + K++ F +F+ F Sbjct: 235 LGILQRAEWDLARYLRSGRLVQVLEDYALPQADIYAVFPERHHLSAKVRVFVDFLVAYFR 294 Query: 293 KARDWKF 299 K D ++ Sbjct: 295 KGADSRW 301 >gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076707|gb|ADJ66106.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 14/295 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF V SGS + AAEQL LS+ +SR ++ LE VG +L +R R L+LT G++L Sbjct: 7 MQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGNELL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E + L P G LRI + Q L + E+ YP + + L+ Sbjct: 67 PRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPGVAVDLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +++ + D AIR+ ++ +LI R L A P YL P +++L Sbjct: 127 ALDRTVNLVEERIDLAIRMTNRLE-PNLIARPLGVCRSIICATPDYLARHGLPRKVEDLA 185 Query: 188 KHNLITFGDLIPKCMEDFN---------WLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 HN +T + + + F+ A+ +P + N ++Q + G Sbjct: 186 LHNCLTH-SYVGRSLWQFDPKKKKARSGRGASAAKPQSVAVGGSISANEVTVLLQAVLAG 244 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI +P Y V + LV+++ D +Y Y L+ +F+ Sbjct: 245 VGIGHMPAYTVAPLVASGQLVQLLPDYEPLQLGMYGVYASRKHMPATLRTMLDFL 299 >gi|323530033|ref|YP_004232185.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323387035|gb|ADX59125.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 307 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 124/284 (43%), Gaps = 8/284 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F + A GS T AAE+L LS ++ SR +S LE +G++L R R L LT+ G + Sbjct: 6 QMEFFVLTADLGSLTRAAERLGLSNAAASRMLSALEDRLGVRLVERTTRRLWLTDAGREY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 HR S + + E S +P G LR+ ++ + L F P++++ + Sbjct: 66 HRRCSALIAEAAEADAAAGELSARPRGVLRVTCSVSFALLHIAPWLPRFRERNPELRVHI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 N+ + D A+R R+ S ++ +KL A+P YL P + + L Sbjct: 126 EAANRYPNFIEAGIDVAVRTREHESDSGIMVQKLAQTRRVFAASPAYLARRGWPGTPEAL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245 H+L+ + + + + E RI+ L+ N I G GI + P Sbjct: 186 ASHDLLVYA----LAADPYLLHLRKGDEVREVRIAPVLESNEGQVICAAARAGMGILIQP 241 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 YIV+D+ LV ++ED P + Y K++ F Sbjct: 242 LYIVRDDIVAGRLVPVLEDWQLPPLIINLAYQSRRHQPAKIRVF 285 >gi|293392983|ref|ZP_06637300.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291424517|gb|EFE97729.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 314 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 100/190 (52%), Gaps = 1/190 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + GSF+ AAE+L L ++++S + LE +G++L R R + +T +G+ + Sbjct: 7 MRIFTRIVELGSFSRAAERLQLPRATVSNTLKRLEQRLGVRLLIRTTRQVNVTHEGTLYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ LE + ++PSGK+RI L + ++ L +F YP I + L Sbjct: 67 QRCIQLLGALEEADTLFSQQKLQPSGKVRIDMPHSLAREIVIPALGDFYQRYPQITLALG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R + + SLI R++ + A+P YL++ P SI +L Sbjct: 127 ANDSHVDLLREGVDCVLRAWE-TEDDSLIARQITAMPQLTCASPAYLQHYGVPQSIDDLH 185 Query: 188 KHNLITFGDL 197 H+ + + L Sbjct: 186 HHHAVGYFSL 195 >gi|170690406|ref|ZP_02881573.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170144841|gb|EDT13002.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 293 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 9/241 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D+L F+ V + F+ AA ++ SQS+IS+ ++ LE +G+ L R R +TLT+QG Sbjct: 4 FDELNAFFAVVEASGFSAAARRIGESQSAISKAVNALEKRLGVALLRRSTRKVTLTDQGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + +++ EL ++++ SG +RIA G+ + + L +P ++I Sbjct: 64 LYYDRMRPLVDEIQVADSELTSTTLEVSGLIRIAAPSTFGRLHVLPLIPGLLARHPGLRI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L + D+ D D AIR+ P++ + R++ + + Y + P + Sbjct: 124 DMVLSDAVRDMVEDRIDLAIRV-SPVEEPDSVVRRVAATSLVCAGSRRYFEQHGVPRTPA 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L HN + + ++ +W A P P L NS +I+ + G GI + Sbjct: 183 DLADHNCLVYREMT-------DWPFAGPQGPFNLPVRGNLSSNSVETILAGVLAGVGIGM 235 Query: 244 L 244 Sbjct: 236 F 236 >gi|163761430|ref|ZP_02168504.1| putative LysR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162281425|gb|EDQ31722.1| putative LysR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 310 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 25/295 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF VAR GSF+ AA++L ++Q+++S QI LE +G +LF R R + TE + Sbjct: 10 NALRVFEAVARHGSFSRAADELGMTQTAVSYQIKLLEGHIGDQLFLRQPRQIVNTETAER 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + L Q+++ S L I ++ + L NL F L +P I ++ Sbjct: 70 MLPSVVKAFDFLGEAMALAQQTA---SETLEIHSSPTFASHWLARNLGAFQLEHPGIAVR 126 Query: 126 LILDNKDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L+ +K D + D AD AIR P L+ R M + A + +P Sbjct: 127 LLRVSKITDFNRDPADVAIRWGVGPWPDLECQLLGR-FTYAPMLSPALAASIGGVNQPSD 185 Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLS---IMQYCVLG 238 + +L +I E + +W A + I P ++ + ++Y+ + G Sbjct: 186 LLKL---------PIIGAQQEAWQHWFAAMGEAI--PDLTSHKQHNYIEQDLSGNAALAG 234 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290 G+A+L D R++ TPS V+ YP + +NT K+KAFR +I Sbjct: 235 QGVAMLNHIYYPDELASGRLVAPFHTPSGDDVGVWLVYPHSRRNTPKIKAFREWI 289 >gi|157147653|ref|YP_001454972.1| hypothetical protein CKO_03456 [Citrobacter koseri ATCC BAA-895] gi|157084858|gb|ABV14536.1| hypothetical protein CKO_03456 [Citrobacter koseri ATCC BAA-895] Length = 308 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 141/296 (47%), Gaps = 26/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F + G + AA QL++S S++S+ ++ +E +G L R R +TLT+ G L Sbjct: 10 LEFFIKIVDCGGLSEAAAQLNVSPSAVSKSLAAMEDTLGTTLIKRTTRSITLTDAGQYLF 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ ++ + T P G+LRI +I G + L + ++ YPD+ + + Sbjct: 70 NRATKLLNEFDETLNTTSGYYHSPQGELRITCSIAFGYSRLVNLVDKYRTQYPDVNLYID 129 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L++ ++++ D A+R+ P Q+ ++ RKLV I A+P YL P EL Sbjct: 130 LNDNFVNLNETDFDIALRISTAPPQNYAM--RKLVPIRWAWCASPGYLAKKGMPQRRVEL 187 Query: 187 DKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 H+ + + L P K ++ L + + +Q NS L +++ + G+A L Sbjct: 188 VNHDCLVYPGLTPVLKVADEQERLHQLKLHMP------IQANSSLVLLKSVLEDQGVAYL 241 Query: 245 PDYIVKDNPNLVRIMEDVITP----------SFTVYFCYPEALKNTGKLKAFRNFI 290 P Y++ D+ I ++ ITP + +Y Y + + K+++F +F+ Sbjct: 242 PTYLIGDH-----IQKEEITPLMLDGTITCETHALYALYFPSKYSNPKVRSFIDFL 292 >gi|330822744|ref|YP_004386047.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308116|gb|AEB82531.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 312 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 10/285 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F+++ R GS + A +L L+ ++SR+++ LE +G++L R R +LT +G + Sbjct: 14 FHLLVRCGSLSATARELGLTTPAVSRRLALLEQRLGVQLLNRTTRRNSLTPEGEEYLVQA 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +E + L+ S +P G LR+ T+ G++ + + F YP +QIQ L Sbjct: 74 RRILADIEDVEHNLRRSMAEPLGLLRVNATLGFGRSHIAPVISRFCKTYPQVQIQFHLSV 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++ D D IR +P + +I RK+ AAP YL+ P +L +H Sbjct: 134 TPPPLTDDAFDVCIRFGEP-PDARVIARKVAANRRLLCAAPAYLERHGTPRVPADLARHQ 192 Query: 191 LITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDYI 248 I+ I + + W + R +++ V + I + + + G GI + ++ Sbjct: 193 CIS----IHHGQDAYGIWRLSAGRRTESVKVAETMVTNDGDIAVAWALDGHGILMRAEWD 248 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + L +++E TP +Y YP + ++ AF +F+ Sbjct: 249 IDKYLRSGRLRQVLEQYSTPPADIYAVYPSRHQKARRVTAFVDFL 293 >gi|188584192|ref|YP_001927637.1| LysR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347690|gb|ACB83102.1| transcriptional regulator, LysR family [Methylobacterium populi BJ001] Length = 302 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 137/292 (46%), Gaps = 10/292 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VA SG F AA L++S +++R ++ LE +G +L R R + LTE G++ Sbjct: 7 MRVFVRVAESGGFAGAARALNMSPPAVTRAVAALEAAIGARLLIRTTRSVKLTEAGARYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ +L + S+ P+G L + + G+ + + ++L + + ++ + Sbjct: 67 EDCRRIFSELAEAEAAAAGSTATPTGTLTLTAPVQFGRLYVLPVVTDYLTHHSAVAVRTL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +++ + D +R+ + S L ++ ++ AAP YL+ P + ++L Sbjct: 127 FLDRIVNMVEEGIDVGVRIGH-LADSGLTAVRVGSVRRVVCAAPRYLERHGMPTAPRDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H +I G P + ++ + + +PR++C V++ L+ V G GIA L Sbjct: 186 AHTVI--GSSNPGSLSEWRFGREQRTAVAVQPRLTCNTVDAALA---AAVEGWGIARLLS 240 Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 Y V + L ++E+ ++ PE + K++AF + + R Sbjct: 241 YQVAPALADGRLRLLLEEHEAAPVPIHVVSPEGRRAPAKVRAFVDLAATRLR 292 >gi|170736195|ref|YP_001777455.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818383|gb|ACA92965.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 334 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 1/185 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + SFT AA+ L +S+++ +R + LE +G+ L R R L T +G + Sbjct: 8 MRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEGDAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + ++ +++ PSG LR+ + ++ L EF +PD+++ L Sbjct: 68 RRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHPDLELTLA 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D D DC+IRL + SSL+ R+L ++ A+P YL P + ++L Sbjct: 128 VAGRAGDRIGDAIDCSIRL-GALPDSSLVARRLGSLERVTCASPAYLDRFGVPRTPEDLG 186 Query: 188 KHNLI 192 H + Sbjct: 187 AHRAV 191 >gi|26990279|ref|NP_745704.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24985229|gb|AAN69168.1|AE016550_10 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 301 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/259 (27%), Positives = 128/259 (49%), Gaps = 10/259 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F + F+ AA +L L+ SS++R + LE +G L R R ++LTE G++ + Sbjct: 7 MKMFVATVDAQGFSAAARRLGLATSSVTRLVDALEASLGATLLNRSTRQVSLTEAGARYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ L+ + + +P G LR++ ++ G+ ++ +L FL +P +++ + Sbjct: 67 QRARGIFEALDEADASIADRGEEPVGVLRLSLPVEFGRRVIAPHLGPFLAQHPALELDID 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186 L ++ D+ D +IRL P + L+ R+L A+P YL REPL QEL Sbjct: 127 LSDRLDDLLDGRYDLSIRLGDPSPNDELVCRRLGGFQRWLVASPAYLAG-REPLQHPQEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245 H + F + W T + E +S ++ +++ L GSGIALL Sbjct: 186 LDHACLRF----RYGQKARPWRLTCGQDSLELDVSGPLRSANADMLRETALAGSGIALLA 241 Query: 246 DYIVKDN---PNLVRIMED 261 D++V+++ L RI D Sbjct: 242 DWLVREDVLAGRLQRIFPD 260 >gi|33597090|ref|NP_884733.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33566541|emb|CAE37797.1| putative LysR-family transcriptional regulator [Bordetella parapertussis] Length = 306 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 29/296 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F V AR SFT AA++L ++Q ++S+Q+ LE VG++LF R +GL LTE G Sbjct: 11 LQAFEVAARHNSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAGRSYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E +EL + G L + + G L L F L PDI ++ + Sbjct: 71 KKIRAGLGQIEAATLELIAHQGR-GGTLHLTAMLTFGARWLIPRLAAFRRLRPDIHVEFL 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE---P 180 + D S D A+R + I S ++ R +V + C E P Sbjct: 130 PHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGRDVVPV-------------CSERLVP 176 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238 Q D +L+ + L+ W ++ + R + + + Y + Q G Sbjct: 177 GGCQ--DAADLLAY-PLLHHTSAMEGWREWFEQAGCDTRRSLEGARFDQYSLLSQAAAAG 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+AL+P +++D + L ++ I Y CYPE ++ L+AFR ++ Sbjct: 234 FGVALIPRCLIEDELRDGKLHVPIQLPIRARQGYYLCYPEQKASSPTLQAFRGWLM 289 >gi|87198895|ref|YP_496152.1| LysR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134576|gb|ABD25318.1| transcriptional regulator, LysR family [Novosphingobium aromaticivorans DSM 12444] Length = 295 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 32/288 (11%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS WD + VA +G+F A++L S S +SR ++ LE +G +LF+R R +++T Sbjct: 1 MSNRWDGIDEVVAVADTGTFVAGAKRLGTSTSHVSRAVARLEQSLGAQLFHRTTRAVSMT 60 Query: 61 EQGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 + G L R+ +E + ++LQ +P G+LRI LG+ + ++ ++ Sbjct: 61 DTGRMLVDQFRRLIAERDEAI--AMLDLQG---EPQGQLRITCPTALGERFVAPIVRAYV 115 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 YP + + L + N+ +++ + D AIR + S LI+ ++ T + AAP YL+ Sbjct: 116 QEYPKLSVDLDMSNRVVELVSEGYDLAIRT-GTLPDSRLIRTQIATRGIVTCAAPSYLEE 174 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLS 230 P ++ +L H + IP + W VD RP G R S + + Sbjct: 175 RGTPQTVDDLLGH------ECIPATSD--VWRYRVDGEQRTIRPRGRWRCS-----NGAA 221 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 + V G G+ LP + V LV ++++ ++ YP+ Sbjct: 222 VFDAAVAGMGLCQLPAFYVNRAIAAGQLVPVLDEFRPEDDPIWAVYPQ 269 >gi|290511746|ref|ZP_06551114.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] gi|289775536|gb|EFD83536.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 304 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS + AA L++ +++SR I LE+ +G++L R R LTLT+ G + ++ Sbjct: 17 GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAAQRILEEV 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + + +P G+L I+ G+ + + EF+ YP I+++L+L +++ D+ Sbjct: 77 ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPQIRVRLLLSDRNADLVS 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 D+ D A+R+ + SS++ +L T+ + A A P L EP ++L +I Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254 +P F D+ I P + L V + S LG G+A L Y D + Sbjct: 196 MPYRGWRFRAAERDDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253 Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L ++E+V V+ Y KL+ F +F Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288 >gi|326315288|ref|YP_004232960.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372124|gb|ADX44393.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 325 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 21/287 (7%) Query: 6 DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F VA GS T AA ++ + + R++ LE +G+KL R R ++LT + Sbjct: 2 DKLKAFESFVSVATRGSLTAAARAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + + +G LRI G+ + + F L+PD+ Sbjct: 62 GSAFLEDCQRLLADVAEAEASVSVGGARATGHLRITAPAGFGRRHVAPLVPLFRDLHPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L L ++ +D++ + DCA+R+ + SSL+ ++ A P YL+ P Sbjct: 122 RISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLERHGTPKH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPR-------ISCLQVNSYLSIM 232 EL +H + L + W + D P G P L + + Sbjct: 181 PSELARHACLM---LSSDASQTRGWAFRMPAAD-PGGAPGDVVHVKPTGPLDCSDGQVLH 236 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 +C+ G GIA + V+ LV ++ED P +Y +P A Sbjct: 237 DWCLGGWGIAWRSTWEVEAEIAAGRLVAVLEDFAAPPNGIYVVFPHA 283 >gi|161521561|ref|YP_001584988.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352271|ref|YP_001947898.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221210885|ref|ZP_03583865.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD1] gi|160345611|gb|ABX18696.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189336293|dbj|BAG45362.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221169841|gb|EEE02308.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD1] Length = 302 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 133/277 (48%), Gaps = 18/277 (6%) Query: 25 EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84 +L L+ +++S++++ +E G+ L R R + LT +G + +++ L Sbjct: 27 RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86 Query: 85 QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144 + +P G LR+ T+ G++ + + F+ YP++ +QL L ++ D D I Sbjct: 87 GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146 Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204 R +P + ++ R+L AAP YL P + EL +HN I I + E+ Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIG----IRQGDEN 201 Query: 205 FN-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NP 253 + W T R G R +++N L+ +++ + G GI + ++ ++D + Sbjct: 202 YGIWRLTTGR--GAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADG 259 Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LV +++D TPS +Y Y + + + +++AF +F+ Sbjct: 260 RLVVVLQDYETPSADIYAVYAQRHQMSTRIRAFVDFL 296 >gi|78063910|ref|YP_373818.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971795|gb|ABB13174.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 314 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 140/295 (47%), Gaps = 12/295 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + F V +GSF+ AA +L ++S +S +I LE + L R R L LT Sbjct: 1 MMNKFTDMSTFVAVVEAGSFSEAARRLGTTKSIVSTRIQKLERRLACALLKR-GRSLQLT 59 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + ++ +LE + E+ E+ SG L+++ + L L F +YP Sbjct: 60 DPGQRFFEQARQLLQELERIEGEVNEAGSSLSGNLKLSVPVTFVARYLAPLLSRFADMYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179 + + + D++ ++ + D AIRL P+ SSL+ R VT++ H A+P YL+ Sbjct: 120 ALCLDVEADDRLSNLQDGHFDAAIRL-GPLADSSLVARP-VTVNRHLICASPGYLERRGM 177 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 P+ +L +H+ + + + P M W ++ R+ ++ +S ++ + G Sbjct: 178 PVHPDDLPQHDGLLYLNREPHGM----WSLPLEYEKQSFRVRVRMRTDSGFQLLAGAIAG 233 Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+A+LP ++ + + LV ++ + V Y + ++ + K++A F+ Sbjct: 234 LGLAILPTFLASEALVSGELVSVLPEYAPSGGQVNVVYRKTVRTSPKIQALVRFL 288 >gi|217422023|ref|ZP_03453526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] gi|217394254|gb|EEC34273.1| transcriptional regulator, LysR family [Burkholderia pseudomallei 576] Length = 315 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 20/288 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA L L+Q ++ R ++ LE + + LF R + GL T+ Sbjct: 7 WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L R +E +E+T L ++ G +RI+ + +G +L + +P Sbjct: 67 AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+L L N+ D+ AD A+R+ +P Q + LI R + I + +A YL C P Sbjct: 123 ALTIELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARCGTP 181 Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 EL +H LI I + E F DR L+ +S L+ + Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAESFPGF---DRG-----AFALRTDSDLAQLALIRC 233 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 G+GI + K +P LVR++ ++ E L+ + + +A Sbjct: 234 GAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281 >gi|123443533|ref|YP_001007506.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090494|emb|CAL13363.1| LysR-family transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 298 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 18/289 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS AAE L +S++ ++R ++ +E G +L +R R L+LT G Sbjct: 9 VFVTIVERGSMIAAAEALEMSRAMVTRYLAEMEQWAGARLLHRTTRKLSLTHAGEA---T 65 Query: 70 TSEVYHKLETTQ----IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + H LE + IE QE+ + G LRI+ + LGQ+ + + ++L YP + + Sbjct: 66 LARCRHMLEFAKDMDLIEGQENE-ELRGLLRISCSQSLGQSAVAIAVTDYLRRYPQVAVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++N+ +++ + D A+R+ + +LI R L H AAP YL P + + Sbjct: 125 LQMNNRSVNLVEERIDLALRITNDLD-PNLIARPLSICHSVVCAAPSYLSAKGTPKTPPD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L HN +T+ K + F+ +G L N + ++ + G+GI L Sbjct: 184 LAVHNCLTY-SYFGKSLWHFDQQGVKSSVAVG----GNLSANESVVLLSGALEGAGITLQ 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y + L+R++ D + +Y Y + L++ +F+ Sbjct: 239 PSYSAAPYIASGELIRLLPDYQPQAMGIYGIYTSRRQMPATLRSMLDFL 287 >gi|121593060|ref|YP_984956.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120605140|gb|ABM40880.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 336 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 14/242 (5%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 R F VAR +F AAE+L L+QS++SRQI LE EVG+ LF RH R + LT G +L R Sbjct: 27 RAFLAVARHLNFRAAAEELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTSAGGQLQR 86 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + +++ +++++ + S + I T L ++EF PDI I++ Sbjct: 87 AVAPALERMDAAVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRDNPDIDIRIDA 144 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELD 187 + +D+ D A+R P ++ QR L + A+P +L N P+ + ++ Sbjct: 145 TDTIVDLETADVDLALRSSVPGTQAAGAQR-LFGEQLAVVASP-WLLNSMPPIRTPADVA 202 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGI 241 + LI GD M F W+ T R + LQ +L I+Q + G G+ Sbjct: 203 QFTLIEAGDA--HRMPYFEWI-TWRRWFELHGLGRLQPKRWLYFNYAQQIVQAALAGQGL 259 Query: 242 AL 243 AL Sbjct: 260 AL 261 >gi|107025529|ref|YP_623040.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|170737440|ref|YP_001778700.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894903|gb|ABF78067.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|169819628|gb|ACA94210.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 364 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 13/304 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + +F + R GSFT AA+ L +S + SR + LE +G+ L R R + LT Sbjct: 1 MEITLQAMSIFTYIVRVGSFTAAAKLLGISAGTASRLVRNLENHLGVTLLQRSTRCVRLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G++ V ++E + L + G+L + ++ +L + EF L +P Sbjct: 61 TEGAQYFEHCERVLGEIEEVKAHLAGARDVARGRLSVDIDQEIAHTVLP-LIPEFRLTFP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++++L + + DCAI + P+ SSL R++ + A+P YL P Sbjct: 120 EVELRLEIGGDPGGLVEHGIDCAIAV-GPLPDSSLRGRRIGDFNAVTVASPAYLSRRGVP 178 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 + +LD+H++I + + DF + VD GE + + V+ S +QY V Sbjct: 179 HELGDLDRHDIIHYSPRRFGPVRDFRY--CVDG--GEVSLKFPERISVSDARSAVQYAVE 234 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G GIA + +V + N LV ++ + S ++ Y + ++AF +++ ++ Sbjct: 235 GIGIAQVCGRMVVNEIANGRLVSLLAENRPTSLQIFALYVDQRYIPRSIRAFIDWLEIQL 294 Query: 295 RDWK 298 R W+ Sbjct: 295 R-WR 297 >gi|224825387|ref|ZP_03698492.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224602308|gb|EEG08486.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 301 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 10/292 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + + GS T A++L ++ ++SR++S LE +G++L R R L LT +G Sbjct: 3 DLSDLAFFTRLMQCGSLTATAQELGITPPAVSRRLSALEKRLGVRLLNRTTRTLALTHEG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L + EL S +P G LR+ T+ G+ + + F+ YP + Sbjct: 63 EHYLSQGQRILDDLAELERELTGSQSEPQGLLRVNATLGFGRRHVAPAVSAFVRTYPKTE 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL L ++ ++ D +IR +P + + L+ RK+V AAP YL + Sbjct: 123 VQLQLSDRMPALTGGAFDVSIRFGEPPE-ARLVARKIVANRRVLCAAPSYLDALAPVTAP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL ++ I ++ + E + W L R L N + + +C+ G GI Sbjct: 182 RELSRNACI----VVRENQEAYGIWQLHAGSRQETVKVGGALATNDGETAVNWCLEGHGI 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L + V + L +++ + ++ +P L + K++AF +F+ Sbjct: 238 LLRSLWDVAPYLQSGRLRQVLPEWQGAPADIWALFPPRLNLSAKVRAFVDFL 289 >gi|222832630|gb|EEE71107.1| predicted protein [Populus trichocarpa] Length = 249 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 11/242 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF + GSF AA+QL +S + ++R ++ LE+ +G +L R R L+LT+ G Sbjct: 6 SMRVFAKLVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + S++ +E + + S SG LR+ T + G +LL L+ F LYPD+ + Sbjct: 66 LQRCSQILEDVEEAESIVAARSQSLSGTLRLVTPVMFGLHLLPQILERFQQLYPDVVFDV 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ IDI + D + L S L+ R L++ + A+P YL+ + +L Sbjct: 126 QLSDRMIDIVEEGRDVGVMLSDLGLGSHLVARPLISAEVILCASPGYLREHPPLRNAHDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIA 242 H I +P + W T+ P GE R L N+ L+ Q + GIA Sbjct: 186 SNHRAIAMR--LPNA--EHEW--TLSGPEGEVTVPIRPGLLCSNAELA-HQAALTNMGIA 238 Query: 243 LL 244 +L Sbjct: 239 ML 240 >gi|116693290|ref|YP_838823.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116651290|gb|ABK11930.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 380 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 13/304 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + +F + R GSFT AA+ L +S + SR + LE +G+ L R R + LT Sbjct: 17 MEITLQAMSIFTYIVRVGSFTAAAKLLGISAGTASRLVRNLENHLGVTLLQRSTRCVRLT 76 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G++ V ++E + L + G+L + ++ +L + EF L +P Sbjct: 77 TEGAQYFEHCERVLGEIEEVKAHLAGARDVARGRLSVDIDQEIAHTVLP-LIPEFRLTFP 135 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++++L + + DCAI + P+ SSL R++ + A+P YL P Sbjct: 136 EVELRLEIGGDPGGLVEHGIDCAIAV-GPLPDSSLRGRRIGDFNAVTVASPAYLSRRGVP 194 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237 + +LD+H++I + + DF + VD GE + + V+ S +QY V Sbjct: 195 HELGDLDRHDIIHYSPRRFGPVRDFRY--CVDG--GEVSLKFPERISVSDARSAVQYAVE 250 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G GIA + +V + N LV ++ + S ++ Y + ++AF +++ ++ Sbjct: 251 GIGIAQVCGRMVVNEIANGRLVSLLAENRPTSLQIFALYVDQRYIPRSIRAFIDWLEIQL 310 Query: 295 RDWK 298 R W+ Sbjct: 311 R-WR 313 >gi|115359127|ref|YP_776265.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284415|gb|ABI89931.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 301 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 95/189 (50%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F V SGSF AAE+L +++S++ + I+ LE +G +L R R +LT+ G Sbjct: 6 DGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLTDDGQA 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +LE + +L + GKLR++ + G + + + + YP ++I Sbjct: 66 YYDRCVRALSELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVMPIVLDLARTYPHLRID 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ++ +D+ + D AIR+ S+SL R+L T + AAP YL P S+ + Sbjct: 126 VSITDRFVDLVEEGIDLAIRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGMPQSLDD 185 Query: 186 LDKHNLITF 194 L H I + Sbjct: 186 LRNHRTIAY 194 >gi|26988591|ref|NP_744016.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24983365|gb|AAN67480.1|AE016374_12 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 317 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 16/254 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F V +GSF+ AA + L+ S+++R+I LE+ VG +LF R + T G+ Sbjct: 8 DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + E S P G +RI G+ L + +FL+ YP + +Q Sbjct: 68 FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127 Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L + +D+ + D +R P+ + L+ L + A A+P YL + P Sbjct: 128 LRLIDSFVDLQGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237 EL H+ + + L P F W +V G+ R+ + N+ +++ + Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFSV---AGQTRLYRPARMRMAANNAETLLFGALA 239 Query: 238 GSGIALLPDYIVKD 251 G GIA LP +++ + Sbjct: 240 GLGIAHLPTWLISE 253 >gi|107029171|ref|YP_626266.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116687042|ref|YP_840289.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105898335|gb|ABF81293.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116652757|gb|ABK13396.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 301 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 17/281 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR GSF AA ++++SR+++ LE + ++LF R +RG+ LT++G L+ T Sbjct: 9 FNLVARHGSFGEAARVAARPKATLSRRVAELENSLSLRLFERGSRGVKLTQEGRALYERT 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L + + S +P G+LRI+ + Q + + F L YPD+++++ ++ Sbjct: 69 GALLAELADSASAIAAGSERPRGRLRISAPMLFSQFAMGRLVATFALRYPDVRLEVTTED 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D IR+ P SLI R ++ + A P + + Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDESLIGRVILRDRLVVVAKPGLARPG-----------GD 176 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN--SYLSIMQYCV-LGSGIALLPDY 247 + T + + D V P G RI V S LS+++ V LG G A LP Sbjct: 177 VPTPAPAVVRGANDTRTAWEVTGPAGTARIPVEPVARLSSLSMVRDTVRLGLGAACLPIS 236 Query: 248 IVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286 +V + ++ DV ++ YP + ++ AF Sbjct: 237 LVSRDLAAGTLVSWGDVPGSDIALWALYPSRRLLSARVSAF 277 >gi|116051562|ref|YP_789600.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115586783|gb|ABJ12798.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 306 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 2/191 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L+VF + SGS + AA QL +S + S + LE+E+ ++LF R R L LT +G Sbjct: 4 YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + LE + LQ + +G L+++ D G+NLL L EF YP + + Sbjct: 64 AFLQHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183 +L+L ++ D+ D AIR P SSL+ L + AAP YL EP Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAPA-DSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182 Query: 184 QELDKHNLITF 194 +L +HN + + Sbjct: 183 DDLREHNCLLY 193 >gi|326204107|ref|ZP_08193968.1| transcriptional regulator, LysR family [Clostridium papyrosolvens DSM 2782] gi|325985874|gb|EGD46709.1| transcriptional regulator, LysR family [Clostridium papyrosolvens DSM 2782] Length = 292 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 131/251 (52%), Gaps = 20/251 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++ ++FY A + SF+ AA +L+++QS++S+ + LE ++G+ LF+R +R + LT Sbjct: 1 MDINFELYKIFYQCAENKSFSEAARKLYITQSAVSQSVKNLEKQLGVTLFHRKSRNIQLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G L S+ Y+ L+T + +LQE +G++RI + + + + +K+F +YP Sbjct: 61 NEGELLFSYASQAYNFLKTAEEKLQEFEGLTAGEIRIGVSDSICKYFIMPYIKKFGQMYP 120 Query: 121 DIQIQLILDNKDIDISMDY-----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 +I +++I N+ +D D AI P+ +++ + A K Sbjct: 121 NIMVKVI--NRTTPQLLDVLKGGLIDIAISTL-PVNQDMFDAVSFISVQ-DIFVASDRFK 176 Query: 176 NCRE-PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSI 231 +E +++QEL+K+ L+ D + +VDR ++C +++ S + Sbjct: 177 ELKEREITLQELNKYPLVLL-------QSDSSTRKSVDRFFQSYGLTCSPEIELESLDLL 229 Query: 232 MQYCVLGSGIA 242 +++ +G+G+A Sbjct: 230 VEFAKIGTGVA 240 >gi|170696917|ref|ZP_02888013.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170138091|gb|EDT06323.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 303 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 117/254 (46%), Gaps = 19/254 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V GS T A L + S +SR I+ LET +G++L R R L+LTEQG Sbjct: 11 VEAFVTVIEKGSMTAGAVALASTPSVLSRAITRLETRLGVQLLRRSTRRLSLTEQGRLYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + +Q +G +R++ G L L++F +P+++++L Sbjct: 71 EQSRAAFLLIDDAERAIQGHGGTLTGHVRLSVPTTYGHYRLPPLLRQFTQQHPEVRVELN 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+++D+ + D AIRL + + S L+ RKL + A+P Y+ P + +L Sbjct: 131 IANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVASPEYVARAGMPEGVADLA 189 Query: 188 KHNLITF-----GDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 H + F G + P +D +WL P + + L ++ G Sbjct: 190 HHLCLPFMLPSSGRIAPWVFRDGGQDIDWL---------PPSNVAVSDDVLGVVSMAQSG 240 Query: 239 SGIALLPDYIVKDN 252 +GI D+IV+D Sbjct: 241 AGICQTYDFIVQDR 254 >gi|107103412|ref|ZP_01367330.1| hypothetical protein PaerPA_01004482 [Pseudomonas aeruginosa PACS2] Length = 317 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA +GSFT A++QL+ + + +SR ++ LET + +L R R + LTE G + Sbjct: 6 NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+GKL++ + +GQ+ + + + Y D+ L Sbjct: 66 LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + N+ D+ + D AI + + S I +++ + A+P YL+ P EL Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242 H+ + L+ + WL D P G+ +S QVN ++ + G GI Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP Y ++ LVR++ V+ YP K+K + ++ Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVFALYPSRQYLDAKIKTWVEYL 291 >gi|26989254|ref|NP_744679.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24984100|gb|AAN68143.1|AE016446_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 299 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 10/258 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F VA++GS + AA L L+ S++SR ++ E +G +L R R LTLT +G Sbjct: 9 EMEIFAKVAQAGSLSAAARALGLTPSAVSRILARTEQRLGTRLLLRTTRALTLTPEGEAY 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R V + + + + V P G+LR++ + + + L F YP + + L Sbjct: 69 LRGARRVLADMLEVEEAITDQGV-PRGRLRVSAALGHARLTVVPLLAAFSARYPQVLVDL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ DI AD A+R + SSL R + A+P YL+ PL ++L Sbjct: 128 TLSDEVADILGGQADVALRFGH-LPDSSLSARAIGETGQVVVASPEYLQRYGTPLEPEDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN + F + M D W D ++ ++ +S ++ Q LG+G+A + Sbjct: 187 ARHNCLRFN--FRRAMPD--WPFHRDGHTFSLKVKGNIECSSGEALAQLARLGAGVARIG 242 Query: 246 DYIVKD---NPNLVRIME 260 + V D N LV ++E Sbjct: 243 TFTVADDLANGQLVPLLE 260 >gi|332561045|ref|ZP_08415363.1| LysR family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332274843|gb|EGJ20159.1| LysR family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 315 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 14/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++AR SF+ A+ L LS S++SR+++ LE +G++L R R ++LT +G + Sbjct: 6 LSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAYY 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + L + +P+G LRI T+ G+ L + F ++P +++QL+ Sbjct: 66 GAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQLL 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ + D IR P ++ R L AAP YL+ P S+ +L Sbjct: 126 LTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDLQ 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 +H+ I ++ + + ++ D IGE S L N + + + G GI Sbjct: 185 QHSCI----VLRQDHDAYDVWRFDD--IGEASPSAKVSGELSTNDGEIALAWVLDGQGIM 238 Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 L ++ + + +R++ + ++ YPE + K++ F + + RD Sbjct: 239 LRSEWDIAQHVREGRLRLLLPHYRQTANIHALYPERHNLSAKVRVFADHLAAHVRD 294 >gi|259415005|ref|ZP_05738928.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] gi|259349456|gb|EEW61203.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B] Length = 317 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 12/296 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +D D+L F V G+ T A +L+LS+S IS++IS LE E+G LF R+A +T T Sbjct: 15 MRYDLDQLETFLAVLELGTVTATAARLNLSKSVISKRISDLELELGTALFRRNAGRITPT 74 Query: 61 EQGSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 E + L T + + + G L I + G L L F Sbjct: 75 ESAQRFAERIRPALADLRTAAEAAAWGGAEQLRGTLSITAPMSFGTLHLSPILATFAARN 134 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P + +++ D++ ID++ D D A+R+ P++ S+L+ RKL A A+ +L Sbjct: 135 PGLSLRIEYDDRIIDLARDGVDLAVRI-GPLRDSALMVRKLCDDVSVACASSDFLNRHGR 193 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLG 238 P + Q+L I + L + W V R P + + VN+ ++ + Sbjct: 194 PETPQDLTGLPAIGYSHLPNSEL----WRFKVGRRDLRPAVKEIATVNNGEAMRDLAIAR 249 Query: 239 SGIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G A+LP +I + D L R++ D T + +P+ KL+ +F+ Sbjct: 250 LGFAMLPGFIALPAIADG-KLERVLPDAATRDMPISAVWPQVQPLPAKLRTLIDFL 304 >gi|163858300|ref|YP_001632598.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163262028|emb|CAP44330.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 290 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 15/284 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +WD LR F+ +A +GS + AA L + ++++R+I+ LE +G+ L R R TLT Sbjct: 1 MNWDDLRHFHTLATAGSLSAAARMLAVEHATVARRIAALEASLGMLLVDRRGRRWTLTAD 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + +++ H+ Q + + SG + ++ L L L E +P + Sbjct: 61 GERIAAIAAKMDHEARAVQRRADSARSELSGTVSVSAPPALAAQALTAPLVELQQRHPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I++I + + + AD AIRL +P + L KL + YA+P YL + Sbjct: 121 TIRIIGEARAASLDRAEADLAIRLSRP-EKGDLTIAKLGKVDFRLYASPAYLAHT----- 174 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241 E D + + G L + A ++R R+ S L I Q G+GI Sbjct: 175 -SEADWRFIGSDGPLAKAPQQ-----AALER-YAAGRVFAFYSGS-LDIQQAAARSGAGI 226 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 A LPD++ + LV + + S ++ LK +KA Sbjct: 227 AALPDFMGMTDAALVPVTPETRLVSRDIWLVVHTDLKRAAAVKA 270 >gi|218530021|ref|YP_002420837.1| LysR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218522324|gb|ACK82909.1| transcriptional regulator, LysR family [Methylobacterium chloromethanicum CM4] Length = 310 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 12/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F A +GSF+ A L LS S IS +I LE +G L R R + LTE G Sbjct: 5 ESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEAGRV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +E + ++ P G L++ + LG+ ++ + F +P+ + Sbjct: 65 FYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEADVH 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ + D A+RL + ++ SS RK+ I A+P YL P S + Sbjct: 125 LRLSDHLLDLVQEAVDVAVRLAQ-VRDSSFTLRKVADIERILCASPGYLAEHPAPESPAD 183 Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H L+ F E F W L D + P + + + ++ + G GI Sbjct: 184 LIDHACLLLRF-----PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGIV 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 L P + V + LV ++ T+ YP + K F Sbjct: 239 LKPVFEVAPYLADGRLVPVLPGAPPTPVTLGVVYPSRKMLPARAKTF 285 >gi|50086563|ref|YP_048073.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49532537|emb|CAG70251.1| putative transcriptional regulator; putative transcriptional activator [Acinetobacter sp. ADP1] Length = 302 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 15/264 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GS AAEQL + S +SR ++ LE ++ + L R R + LT++GS Sbjct: 6 EELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSL 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L + L +S SG +RI + ++L +++F+ LYP I+I+ Sbjct: 66 FLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D AIR + SSL R + ++ A+P YLK P QE Sbjct: 126 LNSNDQVIDLLQHKTDVAIRF-GALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L +H L+ F + +L T I + I+ ++ +S ++ Q + G GIA Sbjct: 185 LFQHQLVGFSKPV--------YLNTWPLKIEDEYITVHPQIKASSGETVRQLTLRGHGIA 236 Query: 243 LLPDYIVKDN---PNLVRIMEDVI 263 L +Y + + +L+ + ED I Sbjct: 237 RLSEYEIWQDLQAGSLIALFEDQI 260 >gi|148549059|ref|YP_001269161.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148513117|gb|ABQ79977.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 317 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 16/254 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F V +GSF+ AA + L+ S+++R+I LE+ VG +LF R + T G+ Sbjct: 8 DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + E S P G +RI G+ L + +FL+ YP + +Q Sbjct: 68 FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127 Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L + +D+ + D +R P+ + L+ L + A A+P YL + P Sbjct: 128 LRLIDSFVDLQGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237 EL H+ + + L P F W +V G+ R+ + N+ +++ + Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFSV---AGQTRLYRPARMRMAANNAETLLFGALA 239 Query: 238 GSGIALLPDYIVKD 251 G GIA LP +++ + Sbjct: 240 GLGIAHLPTWLISE 253 >gi|331658454|ref|ZP_08359409.1| LysR-family transcriptional regulatory protein [Escherichia coli TA206] gi|331054430|gb|EGI26446.1| LysR-family transcriptional regulatory protein [Escherichia coli TA206] Length = 197 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 10/200 (5%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 + F VVAR SFT AA +L +SQS++S + LE + I+L R R + TE G ++ Sbjct: 4 KFFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAGERIIA 63 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 +LE L + + PS +R++ ++L+ LK FL YP+I ++L++ Sbjct: 64 CLEPRIDELERELESLIQLNGAPSWNIRLSAGEHAARSLVWPKLKSFLREYPEINVELVV 123 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 DN +DI D IRL + + + R + M +P Y P + EL Sbjct: 124 DNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETPHELQN 183 Query: 189 HNLITFGDLIPKCMEDFNWL 208 H +C+ + W+ Sbjct: 184 H----------RCINNVTWI 193 >gi|254523510|ref|ZP_05135565.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14] gi|219721101|gb|EED39626.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14] Length = 294 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 25/296 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SF A +L LS S++S I LE +G+ LF+R R + LTE G +L Sbjct: 9 LAAFAAVARHRSFRRAGAELGLSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAGQRLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E+ + P+G LRI T L L FL +PD++++L Sbjct: 69 ERLQPALGQVHDALEEMNQFRAAPAGLLRINATRAAVATQLGPRLARFLRAHPDVRVELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCREPL 181 ++ +DI + D +RL + + +V + M +P YL+ P Sbjct: 129 ENDGLVDIVAEGYDAGVRLHE------FVPEDMVAVPMGPPLRGLIVGSPDYLRRHPAPQ 182 Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++L H I F G L E +D P L + +++ + Sbjct: 183 HPRDLAAHECIRFRFASGHLYKWQFERAGQALEIDVP------GRLTLGEQGTVVGAVLD 236 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A + + + D+ +V +++D P YP+ + G L+AF + + Sbjct: 237 GIGLAYVLEDTARPYIDSGQMVAVLKDWSEPFAGFALYYPKQRQMPGALRAFVDML 292 >gi|109898628|ref|YP_661883.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700909|gb|ABG40829.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica T6c] Length = 302 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 2/189 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F A+ GS + A ++ LS + +S + LE ++G+ LF R R L LT++G + Sbjct: 7 LRIFCETAQQGSLSACARKMDLSPAVVSASLKRLEADLGVLLFIRSTRNLRLTQKGEQFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + L+ ++ + SG ++++ DLG+NLL L EF+ L+ ++I+L Sbjct: 67 RHCIDALSILDEATTQMHSEDTELSGVIQLSAPSDLGRNLLLPWLDEFMTLHQKLEIRLQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186 L + D+ D A+R KP + S I + ++ A+P Y++ P ++QEL Sbjct: 127 LSDSPADLYSQPVDLALRYGKP-KDSGFIAIPVAANNVPVLCASPSYIEQFGSPNTLQEL 185 Query: 187 DKHNLITFG 195 +HN + G Sbjct: 186 TQHNCLCHG 194 >gi|56697065|ref|YP_167428.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678802|gb|AAV95468.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3] Length = 300 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 7/296 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M WD ++VF VAR S + A QL L +++ R+I+ LE+ LF + +G TLT Sbjct: 1 MEPHWDDMKVFLAVAREESLSGAGRQLKLDPATVGRRIARLESAYDTPLFAKSPQGYTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + + + L ++ +G++RI LL + P Sbjct: 61 AAGERLLSHGEQAEAAMRSASEALAGTTEGLTGQIRIGAPDGSANYLLPQVCAQISDENP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ IQ++ + I++S AD A+ + P L+Q K+ +H A+ YL+ Sbjct: 121 ELDIQILALPRIINLSRREADMAVTVSAPTAGHLLVQ-KITDYKLHMVASRRYLRGHPPI 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L H +I + IP + D D IG R++ L NS ++ GSG Sbjct: 180 ETLADLRGHRMIGY---IPDMIFDRELDYLND--IGIERVA-LASNSVSVQLRQAGHGSG 233 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 I + D+ + + NL RI+ D ++ + + Y + + + +L F + RD Sbjct: 234 ICVAHDFTLPFHGNLRRILTDQVSLTRSFYLVRHQGDQRSERLNRFAEALTRGIRD 289 >gi|330810350|ref|YP_004354812.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378458|gb|AEA69808.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 297 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 7/247 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF VA+ GS + AA L L+ S++SR I+ E +G +L R R +T T +G Sbjct: 9 EMSVFATVAQEGSLSAAARALGLTPSAVSRIIARTEQRLGTRLLLRTTRAITFTAEGEAF 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + + + + + V P G+LR++ + G+ + + F YP+I + L Sbjct: 69 LRGARRILADMAEVEEAIADQGV-PKGRLRVSAALGHGRLAIVPLVAAFSARYPNIVVDL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +DI AD A+R + S L R++ A+P YL+ P ++L Sbjct: 128 TLGDEVVDILGGQADVAVRFGH-LPDSPLTARRIGDTGQVVVASPDYLRRHGTPEEPEDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN + F + NW D ++S ++ +S ++ Q +G+GIA + Sbjct: 187 LRHNCLRFN----FRRAEPNWPFIRDGREFSLKVSGNIECSSGEALAQLARVGAGIARIG 242 Query: 246 DYIVKDN 252 ++ V ++ Sbjct: 243 EFTVSED 249 >gi|289662419|ref|ZP_06484000.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 310 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 21/274 (7%) Query: 27 LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86 L + +S +SR+IS LET++G++L R R +T+ G+ +HR + + + + + Sbjct: 3 LGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVGTSVHRHAQTMLAEAQAAREVVDR 62 Query: 87 SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146 S +P G +R++ + L Q L L +FL YP +++QL + N+ +D+ + D A+R+ Sbjct: 63 LSAEPRGLVRVSVPVSLAQIQLPKLLPQFLAKYPKVRLQLNISNRRVDVINEGYDIALRV 122 Query: 147 RKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205 R + SL+ R + A+P YL P EL H ++ + ++ Sbjct: 123 RSRLDDDGSLVMRSFGQVQELLVASPKYLDRTGRPKDPSELANHTTMSTSE------DEA 176 Query: 206 NWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGIALLPDYIVKDNPNLVRIM 259 + + P GE R LQ L+ + +L G GI +LP+ + + VR Sbjct: 177 HQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMARDGFGITMLPETVCAEA---VRSG 231 Query: 260 E-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290 E +V+ P +++ C+ G L A R FI Sbjct: 232 ELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 265 >gi|238894241|ref|YP_002918975.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238546557|dbj|BAH62908.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 293 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 126/250 (50%), Gaps = 15/250 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD R+F +AR+G+ + AA+++++ +++SR++ LE + + LF RH G LT+ Sbjct: 5 FHWDDARIFLAIARAGTLSGAADKMNMGIATLSRRLDRLEQALNVPLFSRHQSGYRLTDD 64 Query: 63 GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L R + Y L + + V +G +R+AT+ +L + + +LK L YP+ Sbjct: 65 GEALLARAEALEYAGLAFGEAAQLQGHV--AGVVRLATSDNLATHFILPSLKGLLDHYPE 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++++ + +++ AD AIR+ KP ++ L ++L T+ Y A L + L Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP-EAGHLTLKRLGTVGFGVYGAADCLVGA-DGL 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240 S+ E D +P W+ R G P C ++ N+ ++ + G G Sbjct: 181 SLSEADFVGWPETHQHLPAA----QWITRTLR--GRP---CKVEANTLVAQVSAVSAGLG 231 Query: 241 IALLPDYIVK 250 + +LP ++ + Sbjct: 232 LGVLPHFMAR 241 >gi|224823554|ref|ZP_03696663.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224604009|gb|EEG10183.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 308 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 17/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F A+ L + +S +SR+++GLE ++G++L R R L LTE G Sbjct: 3 DLNDLLFFAKVVEHGGFNAASRVLGIPKSRLSRRVAGLEEQLGVRLLQRTTRKLALTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + + + + + + G +R++ L + L L F+ +P ++ Sbjct: 63 ASFYDHCQAMLAEADAAEESVSRVTAEARGLIRVSCPELLAKTELGPLLPRFMQQHPQVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L N+ +D+ D D AIR+R I+ S+SL+ R+L A+P L+ P S Sbjct: 123 LLLEATNRRVDLIEDGIDVAIRVRSVIEDSASLVARRLGIARQVLVASPALLQQYGTPAS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLG 238 ++ + ++ P F L V I +PR L + + + + G Sbjct: 183 PADVARLPALSMN--WPDGRGHFALLDAVGHDYSVQIEQPR---LITDDLMVLTEAAEAG 237 Query: 239 SGIALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294 G+A LP + LVR++ D I P ++ +P G + A R FI FL A Sbjct: 238 LGVAQLPVQLCHAALAAGRLVRLLPDYIIPGGILHAVFP---SRRGLVPAVRAFIDFLAA 294 >gi|239820457|ref|YP_002947642.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] gi|239805310|gb|ACS22376.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 308 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 4/192 (2%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V GSFT AA+ L S ++++R ++ LE + +L R +R L+LTE Sbjct: 2 DRLRAYEVFVTVVARGSFTKAADALDTSPANVTRYVNELEAHLRTRLMNRTSRRLSLTEG 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + ++ T+ +S++P G+LRI + G +L +F+ YPD+ Sbjct: 62 GEALFDRAKSILEEVAETEALATTASLQPRGRLRINAPLSFGSLVLAPLWPKFMAKYPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +DI + D AIR+ + S + I R+L A+P YL P + Sbjct: 122 ELDIALIDRVVDIVEEGYDLAIRISR-TTSGNHIARRLGRSQNLVCASPGYLAAHGMPET 180 Query: 183 IQELDKHNLITF 194 +L +H + + Sbjct: 181 PADLSRHPCLGY 192 >gi|298486300|ref|ZP_07004363.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159307|gb|EFI00365.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 302 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 131/279 (46%), Gaps = 9/279 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F + SGS + AA+ S +S+ R ++ LE+ +G++L R R + LT++G + R T Sbjct: 10 FVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDEGEEYLRWT 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + + L G LR+ ++ GQ + + FL + +I ++L L++ Sbjct: 70 RRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLCEHQNINVELNLND 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + + + + D A+R+ + S+++ R++ + + A+P YL+ + + L +H Sbjct: 130 QIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLDTPKSLPEHA 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 IT + + I PR+ C QV + CV G G+ L Y V Sbjct: 189 CITLASHGRQWYFRHQGKELIQDII--PRLVCNQVRAA---SLACVQGLGVTRLMHYQVA 243 Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 D + L+R++ D T + YP AL+ + ++KAF Sbjct: 244 DELADGRLIRVLNDFETADLPIQLVYPHALQLSPRVKAF 282 >gi|257486092|ref|ZP_05640133.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010436|gb|EGH90492.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 294 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 10/286 (3%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF + GS AAE L +S++ ++R ++ +ET G +L +R R L LT G Sbjct: 4 RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 ++ + + +P G LRIA + L +L + +L YP + L++ Sbjct: 64 RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 123 Query: 129 DNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +D+ + D AIR+ +P ++I R L A+P YL P S QEL Sbjct: 124 GNEAVDLVSERIDLAIRITNQP--DPNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELA 181 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +T+ K + +F P+ P L N + +++ V G+GI L P + Sbjct: 182 AHNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVH 237 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ ++ D + ++ Y + L+ +F+ Sbjct: 238 SAAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 283 >gi|193078755|gb|ABO13827.2| putative transcription activator [Acinetobacter baumannii ATCC 17978] Length = 300 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/295 (25%), Positives = 145/295 (49%), Gaps = 10/295 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +R+ + +++ + +F YPDI+I+ Sbjct: 66 FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + ++ A+P YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L++H+LI F P + + + + +I + +S ++ Q + G GIA L Sbjct: 185 LEQHDLIGFTK--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHGIARLS 239 Query: 246 DY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 ++ I KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 240 EFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|170702944|ref|ZP_02893782.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170132146|gb|EDT00636.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 300 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++++ + G+FT AA+ L L + ++++ + LE E+GI+L R R +++T +G H Sbjct: 7 MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGIRLLNRSTRRVSVTAEGEAFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + V P G+LR+ + L + ++ L EF YP I++ L Sbjct: 67 ARCVQLLGSIDDAFASFPKQRVAPKGRLRLDIAVALAKTVVIPALPEFQQRYPQIELVLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D+ + DC +R+ ++ SS+I R + + M A+P Y+ P ++ +L Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMIARTVGAVPMVTCASPAYIVRHGLPRTLDDLR 185 Query: 188 KHNLITF 194 H + F Sbjct: 186 AHRAVNF 192 >gi|241203692|ref|YP_002974788.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857582|gb|ACS55249.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 300 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 14/298 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V G F+ AA +L++S + + + LE +G++L R R ++LTE G + Sbjct: 7 LTVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ +L+ S P G L++ T+ + + LL + EF+ LYP I + Sbjct: 67 ERSLQILAELDEADRTAGALSTTPRGTLKVYTSSAIVRFLLP-VVGEFMELYPSISLDFS 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D D +R P SSL+ RKL +P Y ++ P + E+ Sbjct: 126 VGERMVDMIEDGYDLVMRTVPP-PDSSLVARKLTPWRHMLVCSPVYFESHPMPKTPAEVA 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVL-GSGIALLP 245 HN + + P E W E +IS V++ ++++ L G GI L P Sbjct: 185 DHNCLQYA-YYPYGDE---WRFEDGEGKKESVKISGNVVSNSAEMLRFLTLTGRGIFLAP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 ++V D+ LV+IM D F + YP K++ F + + F + R W Sbjct: 241 SFVVFDDIAEGRLVKIMPDYRPIEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHRKW 298 >gi|309703491|emb|CBJ02831.1| LysR-family transcriptional regulator [Escherichia coli ETEC H10407] Length = 310 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + GSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHRGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|117617507|ref|YP_857071.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558914|gb|ABK35862.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 325 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 18/278 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F V +GSF+ AEQ L+ S +S++I LE E+G++L YR R LTL+E G Sbjct: 29 DDLILFAQVVEAGSFSKVAEQNSLTNSVVSKRIGRLEEELGVQLLYRTTRRLTLSEAGKA 88 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L++ V + K SG +R++ G+ LL + +F +P + ++ Sbjct: 89 LYQGAKNVKAAALDAFDAVAGFGEKVSGHVRMSVPTISGELLLADAVADFCQQHPGLTVE 148 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + LDN+ +++ + D IR + SSLI R ++ AAP Y++ P + Sbjct: 149 MSLDNRFVNLVEEGFDLVIRT-GYLDDSSLIARHILDSQWVICAAPAYVRRFGAPREPSD 207 Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L HN + + E+ N+L +V L+ + + G Sbjct: 208 LLTHNCLRYAYQSTGASEWAFKGEEGNYLLSVSGSFCTDNAGALR--------KAALGGR 259 Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 GI +P +V N LV + D + +Y YP Sbjct: 260 GIVYVPRCLVYHDLMNGELVDLFPDQVGKKLGIYAVYP 297 >gi|33597807|ref|NP_885450.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] gi|33574236|emb|CAE38568.1| probable LysR-family transcriptional regulator [Bordetella parapertussis] Length = 306 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 131/291 (45%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 DWD LR F VAR+ + AA +L + ++++R++ LE E+ LF + + G LTE Sbjct: 2 LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G +L ++ + T + L SG +RI T G +L +F YP Sbjct: 62 DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ + + +S AD AI + +P Q + KL + Y P YL Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L HN I + D + E +L V + ++ L+ S ++ + G + Sbjct: 181 ERADLAGHNFIGYVDEL-LFSERLRYLEDV---LPNSQV-VLRSTSVIAQYHAALQGQSL 235 Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP +I +P L ++ D I SF +Y C+ E L+ ++ A F+ Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAIMRSFWMY-CH-EDLRRLKRVSALWEFM 284 >gi|237800755|ref|ZP_04589216.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023613|gb|EGI03670.1| LysR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 303 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 136/301 (45%), Gaps = 33/301 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF VAR SF AA +L +S + +S+++ LE +G+ L +R R +++TE G + Sbjct: 7 DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQSMGVVLLHRSTRQVSITEDGER 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ E+ +PSG LR+ ++ G+ + L E YP + I+ Sbjct: 67 VYEWARGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLDIR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +D+ + D IR+ I + L R L T A+P YL+ PLS+ E Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLATNWRVLCASPAYLQQRGVPLSLGE 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSYLSI------MQ 233 L H+ + + DRP G ++V LS Q Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGSQGAETVKVTGSLSTNHGEIARQ 231 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289 +C+ G G+ L + V+ + R+++ + P + ++ + L ++ K++ F Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLIQ--VLPEYRQDADIWAVHTSPLMSSAKVRVTVEF 289 Query: 290 I 290 + Sbjct: 290 L 290 >gi|186471572|ref|YP_001862890.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197881|gb|ACC75844.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 297 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 128/268 (47%), Gaps = 8/268 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF +AR SFT AA +L +SQS++S I LE +G++L R R ++ TE G +L + Sbjct: 11 VFLAIAREKSFTRAAAKLGVSQSALSHTIRDLEARLGLRLLTRTTRSVSTTEAGEELFQA 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +++ + L + KP+G +RI T + ++ L++ L+ YPDI++++ +D Sbjct: 71 VAPRIEEIDASLAALSDFRDKPAGVIRITATDHPIETVIWPKLRKLLISYPDIKVEVTVD 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 +I + D +R + + R I M +P Y N P S ++L H Sbjct: 131 YGLSNIVEERYDIGVRFGDQVAKDMIAVRISPDIPMAIVGSPSYFANRNHPKSPEDLLNH 190 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248 IT K + + W + + R+ + N+ ++Q + G G+A +P+ Sbjct: 191 ECITLRMTTTKAL--YAWELKKGKRETQARVGGQVTFNTQPQMVQAALDGFGLAFVPEDA 248 Query: 249 VKDNPN---LVRIMED--VITPSFTVYF 271 V + N L +++D I P + Y+ Sbjct: 249 VVNYINKGQLQSVLKDWCPIWPGYHAYY 276 >gi|15595254|ref|NP_248746.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099048|ref|ZP_01362966.1| hypothetical protein PaerPA_01000057 [Pseudomonas aeruginosa PACS2] gi|218888801|ref|YP_002437665.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254237699|ref|ZP_04931022.1| hypothetical protein PACG_03787 [Pseudomonas aeruginosa C3719] gi|254243166|ref|ZP_04936488.1| hypothetical protein PA2G_03968 [Pseudomonas aeruginosa 2192] gi|296386539|ref|ZP_06876038.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313112392|ref|ZP_07798147.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9945879|gb|AAG03446.1|AE004445_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126169630|gb|EAZ55141.1| hypothetical protein PACG_03787 [Pseudomonas aeruginosa C3719] gi|126196544|gb|EAZ60607.1| hypothetical protein PA2G_03968 [Pseudomonas aeruginosa 2192] gi|218769024|emb|CAW24784.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310884649|gb|EFQ43243.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 306 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 1/186 (0%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF V SGS T AAE+L +S++ +SR ++ LE VG +L +R R L+LT+ G++L Sbjct: 8 RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 E+ + Q Q P G LRI +++ Q L F+ YP I L + Sbjct: 68 QCREMLAVADAMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ +++ + D A+R+ + +LI R+L AAP YL+ P ++L Sbjct: 128 NSQVVNLVEERIDLALRIANQLD-PNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186 Query: 189 HNLITF 194 HN +T+ Sbjct: 187 HNCLTY 192 >gi|289673146|ref|ZP_06494036.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae FF5] gi|330980789|gb|EGH78892.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 303 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 26/296 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+ LR F + + S + AA L + +++SR+I+ LE + +KL R R LT Sbjct: 23 ICFDWEDLRYFVMFSTVSSLSGAARILGVEHATVSRRIASLERSLNVKLVDRRKRLYELT 82 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G ++ + ++ + + + V ++ I+ + L L F ++P Sbjct: 83 DEGRRVAAIGRQIEAQTQAVGRLAVAAQVVQGVEVTISAPPSVAVEKLVPQLGAFRAMHP 142 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L+ D++ +S +D IR KP++ S ++ R++ T Y A YL+ R P Sbjct: 143 GIMLRLLGDHQYSSLSSCQSDLCIRFSKPVE-SGIVARRIGTASFSFYCARFYLEQ-RPP 200 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLATV--DRP-IGEPRISCLQVNSYLSIMQYC 235 ++ I + + + M D WL + DRP + E + LQ+ + + Sbjct: 201 ------QQYEFIAYDN---ELMSDSQNGWLRDIVGDRPFVLEAKTVELQIRAAET----- 246 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 G GIALLP + V+DN L R+ ++ P V+ E L+ ++A N++ Sbjct: 247 --GVGIALLPSFAVEDNDRLCRV--ELSAPLEVDVWLGVHEDLRAVASIQAAMNYV 298 >gi|258544946|ref|ZP_05705180.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC 15826] gi|258519866|gb|EEV88725.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC 15826] Length = 303 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 9/264 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF + GSF+ AA L+++ S+Q++ LE +G+ LF R+ R L LT++G Sbjct: 7 DDLAVFLQTVQCGSFSAAARALNVAPKVASKQVARLEAALGVALFTRNTRNLRLTDEGEA 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V L + EL + + G +R+ G+ + + +F YP + Sbjct: 67 LRDKARSVLDGLAEMR-ELAQGADGMRGMIRLTAPAPFGRKYVAAAVADFSRRYPQVGFS 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ++ D AIR+ + + S LI R++ A+P YL P S E Sbjct: 126 LCLSDEVCNLFAGNFDLAIRMGE-LADSRLIARRIAVNRRILVASPAYLAEYGCPQSPAE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +H + F P D +W R+S L +S + +C+ G GI+L Sbjct: 185 LSEHRCLRFA--YPGLAAD-SWTLRNGDAEAVVRVSPHLSSDSGEVLHAWCMAGLGISLR 241 Query: 245 PDYIVK---DNPNLVRIMEDVITP 265 + V +N +L R++ D TP Sbjct: 242 ETWDVCEALENGSLRRVLPDWQTP 265 >gi|238763992|ref|ZP_04624948.1| Glycine cleavage system transcriptional activator [Yersinia kristensenii ATCC 33638] gi|238697809|gb|EEP90570.1| Glycine cleavage system transcriptional activator [Yersinia kristensenii ATCC 33638] Length = 305 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 17/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AA++L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTKAADELLVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + + L +L + AP L + Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGDNGLKVPAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242 L H L+ +W+A R +G P+I+ Q + + ++Q V G GIA Sbjct: 186 LANHTLL-------HDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSVMVVQAAVHGQGIA 237 Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 L+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 238 LVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gi|184159955|ref|YP_001848294.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|213158760|ref|YP_002321182.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|260557799|ref|ZP_05830012.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|301345893|ref|ZP_07226634.1| transcriptional regulator, LysR family protein [Acinetobacter baumannii AB056] gi|301594538|ref|ZP_07239546.1| transcriptional regulator, LysR family protein [Acinetobacter baumannii AB059] gi|183211549|gb|ACC58947.1| Transcriptional regulator [Acinetobacter baumannii ACICU] gi|213057920|gb|ACJ42822.1| transcriptional regulator, LysR family [Acinetobacter baumannii AB0057] gi|260408590|gb|EEX01895.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 300 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +R+ + +++ + +F YPDI+I+ Sbjct: 66 FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + ++ A+P YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184 Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L++H+LI F + P + D + A S ++ +S ++ Q + G G Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IA L ++ I KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|212712113|ref|ZP_03320241.1| hypothetical protein PROVALCAL_03193 [Providencia alcalifaciens DSM 30120] gi|212685254|gb|EEB44782.1| hypothetical protein PROVALCAL_03193 [Providencia alcalifaciens DSM 30120] Length = 313 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 18/296 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AA++L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ L +LQ S K G L ++ + L L F +P I ++ Sbjct: 69 YYLDIKEIFSSLNEATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSGFNQAFPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + + L +L ++ +P L + + ++ Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTDRLYAEYLMPVCSPSLLTGGNQLKNPED 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241 L KH L+ +W A V + + I +Q S ++Q V G G+ Sbjct: 186 LAKHTLL-------HDSSRRDWQAYV-KQLDLQNIVNVQQGPIFSHSSMVIQAAVHGQGV 237 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 AL + + K D LV +V+ Y E+ + GK+ AFR +I +A Sbjct: 238 ALTNNVMAKNEIDAGRLVCPFSEVLVSKNAFYLVCQESQADLGKIAAFRQWILAQA 293 >gi|167622558|ref|YP_001672852.1| LysR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352580|gb|ABZ75193.1| transcriptional regulator, LysR family [Shewanella halifaxensis HAW-EB4] Length = 304 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V+A GSFT AAE+L S+S +S+Q++ LE +G+ L R R LTEQG + Sbjct: 10 VRAFTVIAEKGSFTIAAEKLGCSRSHLSKQLTQLERYLGVTLITRTTRAQRLTEQGRFFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 +E + + + GK+ I +G+ ++ + +F+ L+P+IQ+ L Sbjct: 70 ERCQHALDIMEQAVAKTVDDAHNLQGKININCVGGYIGEEIVNQLVNDFMTLHPNIQVHL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ +D D R+ + ++ S L+ RKL+ I A+P Y+ P +EL Sbjct: 130 DFSSQRVDLVLDEFDLVFRMGE-LEDSGLVARKLMDIANCTLASPRYIAKHGRPEHPKEL 188 Query: 187 DKHNLIT 193 H +T Sbjct: 189 KHHACVT 195 >gi|116253177|ref|YP_769015.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257825|emb|CAK08923.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 308 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 9/282 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V + GS + AA +L L+Q +I R + LE +G +LF R GL T+ Sbjct: 7 WDFYRSFLTVLQQGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + +G +R++ + + +L L YP++QI Sbjct: 67 ALKPYAETLAATTAALLRTASGQRERMAGTVRVSASEVIAVEVLPAILGPLQETYPELQI 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + D+ AD A+R+ +P Q ++L+ R++ I + +A YL+ P ++ Sbjct: 127 ELSASDMIEDLVNREADIAVRMAEP-QQAALVVRRIGDIPLGFHAHRRYLERHGLPQTLT 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243 +L H LI F ++ + P I+ + +S L+ + G GI L Sbjct: 186 DLTNHRLIGFD-------RQTAYVRMAMKRYAVPGINFSYRTDSNLAQLSAIRAGVGIGL 238 Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + NP+LV ++ D + E LK++ + +A Sbjct: 239 CQIGLARGNPDLVHVLPDAFAIPLGTWVAMHENLKSSPRYRA 280 >gi|116252416|ref|YP_768254.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257064|emb|CAK08158.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 295 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 3/257 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L+ A SGSF AA++L +S + + R+I LE E G+KL R R LTE G Sbjct: 3 DLLNLQTLIAAATSGSFAGAAKRLGISPAMVGRRIQALEQEYGVKLIERTTRTQRLTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 S+ + + +LE + + SG+LR++ LG L + E +P + Sbjct: 63 SRFLVKANRIIDELEELNDISRPDAEAMSGRLRLSAPTTLGIKRLAPVMAELAERHPALS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++L L ++++D+ + D AIR+ + ++ SSLI R++ + H A+P YL P Sbjct: 123 VELNLSDRNVDLVAEGYDLAIRIGE-LKPSSLIARRVGSYHFVCCASPAYLDRFAVPERP 181 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L I +L+P+ F +G +++++ ++ + G+G+ Sbjct: 182 EDLRLGRCILNLNLVPRDEWPFETEGRESFTVGVR--GNIEIDNGEALRMAALAGAGVIY 239 Query: 244 LPDYIVKDNPNLVRIME 260 +P +V D+ R++E Sbjct: 240 VPVDLVADDIADGRLVE 256 >gi|238783726|ref|ZP_04627746.1| Glycine cleavage system transcriptional activator [Yersinia bercovieri ATCC 43970] gi|238715439|gb|EEQ07431.1| Glycine cleavage system transcriptional activator [Yersinia bercovieri ATCC 43970] Length = 298 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AA++L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 2 NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 62 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 119 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + + L +L + AP L Sbjct: 120 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPGLL----------- 167 Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238 + +H L DL + +W+A R +G P+I+ Q + ++Q V G Sbjct: 168 MGEHGLKVPADLAYHTLLHDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 226 Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIAL+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 227 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 285 >gi|220924990|ref|YP_002500292.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949597|gb|ACL59989.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 305 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 18/289 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GSF+ A L LSQ+ +++ ++ LE +G +L +R R LTLTE G Sbjct: 8 MQVFVRVAALGSFSAAGRALRLSQTGVTKHVAALEERLGTRLLHRSTRRLTLTEAGRGYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + +V+P G LR+ + G + L +F +P ++I L Sbjct: 68 DACERILAEIDEAEAAAGAEAVEPRGTLRLNVPLSFGVREIAPALADFAAAHPGLRIDLG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D A+R+ + ++ SSL+ R L + AAP YL+ P +L Sbjct: 128 LNDRTVDLIEEGWDLAVRIGR-LRDSSLVARFLAPCRLLVCAAPAYLEAHGTPRRPDDLA 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244 HN + + W GE P L+ ++ +++ + G G+ Sbjct: 187 AHNCLGY-----TLASAEGWR------FGERAYPVSGNLRASNGDALLAAAIAGQGLIYQ 235 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P +IV + + LV + + ++ P + K++A +F+ Sbjct: 236 PTFIVSEALRDGRLVSLDLGAAPATLPIHALMPPGRRQPAKVRACVDFL 284 >gi|115360737|ref|YP_777874.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286065|gb|ABI91540.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] Length = 313 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AA++L ++ + SR ++ LET + +L R R + LT+ G + Sbjct: 7 MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + E ++ KPSG+L + T GQ + + + YP + ++L Sbjct: 67 DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L DI + D +++L + S L+ ++L +H A+P YLK P S+++L Sbjct: 127 LSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTPRSVRDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242 + H+ + + P D W +D P G E + QVN ++ G GI Sbjct: 187 EAHSCLQI--VTPIFPRD-RW--HLDGPDGRETFELPLPDFQVNIADALGAALRAGLGIG 241 Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + LVR++ + TVY Y K++ F +F+ Sbjct: 242 SLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292 >gi|73537322|ref|YP_297689.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gi|72120659|gb|AAZ62845.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] Length = 307 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 15/245 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A +GSF+ AA +L L+ +++S+ ++ LE +G++LF+R R LTLT G + Sbjct: 7 LESFVHSAETGSFSAAARRLGLTPAAVSKNVARLERHLGLRLFHRSTRRLTLTSGGEQFF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + L E + KP+G L++ + G+ L L EFL LYP I Sbjct: 67 SQVSNPFSALRDAFAGAAEDAGKPAGVLKVGMALAFGREYLVPLLGEFLALYPGIVPDWH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +N+ D+ D D AI + + ++ R+L H+ A A+P +++ + L Sbjct: 127 FENRPTDLIRDGFDAAIGGGIEL-TEGVVARELARTHVVAVASPAFMQG-------KALP 178 Query: 188 KH--NLITFGDLIPKCMEDFNWLA-TVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240 +H +L+ F ++ + A T+ +GE + L + ++ + G G Sbjct: 179 RHPSDLLAFDGIVRRSGATGRLRAWTLRNQVGEQAPAEHRARLIFDDPEAMAHAAMHGLG 238 Query: 241 IALLP 245 IALLP Sbjct: 239 IALLP 243 >gi|319945336|ref|ZP_08019598.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319741906|gb|EFV94331.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 312 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 13/273 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF A L +S++++SR ++ LE + +L R R L+LT +G + Sbjct: 7 MSTFVAVVEAGSFVKAMSVLGISKAAVSRHVAELEQHLETRLLQRTTRRLSLTAEGQRYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 EV ++ + E++ S + G+LRI G L FL P +Q+ ++ Sbjct: 67 ERCKEVLAAVQEAESEIRSRSGEAYGRLRICVPYSFGILHLAPLWSTFLSENPQVQLDIV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D A+R+ + S+LI R+L T + A P YL+ P +++L Sbjct: 127 LSDRMVDLVEEGYDMAVRI-GVLTDSALISRRLATTRLILCATPTYLERHGTPKVLKDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 H I + W + + P G + L N+ + ++ + GIAL Sbjct: 186 HHQAIVYS----YSARAGEW--SFEGPDGRETVQSETRLFANNGDTCLRVALDHQGIALQ 239 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 P++++ ++ LV+++ T +Y YP Sbjct: 240 PEFMIHEHLRRGELVQLLPQYNTGERNIYALYP 272 >gi|332160549|ref|YP_004297126.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606979|emb|CBY28477.1| lysr-family transcriptional regulator clustered with PA0057 [Yersinia enterocolitica subsp. palearctica Y11] gi|325664779|gb|ADZ41423.1| LysR family transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863539|emb|CBX73655.1| hypothetical protein YEW_CV11670 [Yersinia enterocolitica W22703] Length = 298 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 18/289 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF + GS AAE L +S++ ++R ++ +E G +L +R R L+LT G Sbjct: 9 VFVTIVERGSMIAAAETLEMSRAMVTRYLAEMEQWAGARLLHRTTRKLSLTHAGEA---T 65 Query: 70 TSEVYHKLETTQ----IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + H LE + IE QE+ + G LRI+ + LGQ+ + + ++L YP + + Sbjct: 66 LARCRHMLEFAKDMDLIEGQENE-ELRGLLRISCSQSLGQSAVAIAVTDYLRRYPQVAVD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++N+ +++ + D A+R+ + +LI R L H AAP YL P + + Sbjct: 125 LQMNNRSVNLVEERIDLALRITNDLD-PNLIARPLSICHSVVCAAPSYLSAKGTPKTPPD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L HN +T+ K + F+ +G L N + ++ + G+GI L Sbjct: 184 LAVHNCLTY-SYFGKSLWHFDQQGVKSSVAVG----GNLSANESVVLLSGALEGAGITLQ 238 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P Y + L+R++ D + +Y Y + L++ +F+ Sbjct: 239 PSYSAAPYIASGELIRLLPDYHPQAMGIYGIYTSRRQMPATLRSMLDFL 287 >gi|269966149|ref|ZP_06180239.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829296|gb|EEZ83540.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 291 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 140/296 (47%), Gaps = 29/296 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +KL +F VA++ +F+ AAEQL +S+S +S QI LE+E+ L R R + LT +G Sbjct: 8 EKLMLFAEVAQTLNFSRAAEQLSISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGES 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ + L + S + G +R+ + +L F L+P+++ + Sbjct: 68 IFAQAEDLKRRVMEMEKSLSQQSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEFE 127 Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + +++ D A R R P + ++I L+ H A+P YL+ P ++ Sbjct: 128 ILSSYQAFNLTETSVDFAFRATRTPPE--NMIAHHLLDYHHWLVASPQYLQEEGTPETLD 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238 +L +H +T + W P+ + +Q +LS + + + G Sbjct: 186 DLQEHQCLT-------TLHQKEW------PL---KTGTVQTQGWLSSNENRLLKESALSG 229 Query: 239 SGIALLPDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +GIA L Y V+ ++ LV+++ E+ VY YP+ + + K +AF F+ Sbjct: 230 NGIARLASYFVEQDVEHGRLVQVLSEETDHQHNAVYLVYPQLIYQSAKTRAFIEFV 285 >gi|120609112|ref|YP_968790.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120587576|gb|ABM31016.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 325 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 21/287 (7%) Query: 6 DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKL+ F VA GS T AA ++ + + R++ LE +G+KL R R ++LT + Sbjct: 2 DKLKAFESFVSVATRGSLTAAARAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 GS + + + + + +G LRI G+ + + F L+PD+ Sbjct: 62 GSAFLEDCQRLLADVAEAEASVSVGGARATGHLRITAPAGFGRRHVAPLVPLFRDLHPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +I L L ++ +D++ + DCA+R+ + SSL+ ++ A P YL+ P Sbjct: 122 RISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLERHGTPKH 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPR-------ISCLQVNSYLSIM 232 EL +H + L + W + D P G P L + + Sbjct: 181 PSELARHACLM---LSSDASQTRGWAFRMPAAD-PGGAPGDVVHVKPTGPLDCSDGQVLH 236 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276 +C+ G GIA + V+ LV ++ED P +Y +P A Sbjct: 237 DWCLGGWGIAWRSTWEVEAEIAAGRLVAVLEDFAAPPNGIYVVFPHA 283 >gi|320158100|ref|YP_004190478.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O] gi|319933412|gb|ADV88275.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O] Length = 303 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +V GSFT AA++L ++ S++S+ I+ LE + +KLF R R L +T+ G K++ Sbjct: 13 LASFILVVNEGSFTAAAKKLDVTPSALSKLITRLEQALQVKLFERTTRKLLITQAGQKVY 72 Query: 68 RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + IE+ S +P+G L +A ++LQ + FL YP+IQ++L Sbjct: 73 DQSIAMVNAAQQA-IEISASDHSEPAGALTVAAPEAFLNSVLQPFVVPFLQQYPNIQLKL 131 Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +ID+ D D A +L KP +L+ ++L H+ A+P YL P E Sbjct: 132 RAADGEIDLFRDNIDVAFKLTDKP--DENLVLKELSKTHLVLCASPDYLAQRGMPSHPTE 189 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L +H+ + + +D W D +S VN + G GI + Sbjct: 190 LTEHDCLYLAE----NDKDNLWSFFKDEAFYSVAVSGRYAVNHSQMRLNGVKQGLGIGIF 245 Query: 245 PDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290 D++++D +V++++D + S + YP+ +L+ F +FI Sbjct: 246 HDFVIRDALERGEVVKVLDDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFI 297 >gi|313499387|gb|ADR60753.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 299 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 10/258 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F VA++GS + AA L L+ S++SR ++ E +G +L R R LTLT +G Sbjct: 9 EMEIFAKVAQAGSLSAAARALGLTPSAVSRILARTEQRLGTRLLLRTTRALTLTPEGEAY 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R V + + + + V P G+LR++ + + + L F YP + + L Sbjct: 69 LRGARRVLADMLEVEEAITDQGV-PRGRLRVSAALGHARLTVVPLLAAFSARYPQVLVDL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ DI AD A+R + SSL R + A+P YL+ PL ++L Sbjct: 128 TLSDEVADILGGQADVALRFGH-LPDSSLSARAIGETGQVVVASPEYLQRHGTPLEPEDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +HN + F + M D W D ++ ++ +S ++ Q LG+G+A + Sbjct: 187 ARHNCLRFN--FRRAMPD--WPFHRDGHTFSLKVKGNIECSSGEALAQLARLGAGVARIG 242 Query: 246 DYIVKD---NPNLVRIME 260 + V D N LV ++E Sbjct: 243 TFTVADDLANGQLVPLLE 260 >gi|83859533|ref|ZP_00953053.1| transcriptional regulator, LysR family protein [Oceanicaulis alexandrii HTCC2633] gi|83851892|gb|EAP89746.1| transcriptional regulator, LysR family protein [Oceanicaulis alexandrii HTCC2633] Length = 296 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 1/187 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F VA SFT AAE+L ++ + S+QIS LE + +L R R + LT+ G Sbjct: 5 DALRLFAAVAELESFTRAAERLGMTAGAASKQISALEERMQARLLERTTRSVRLTDAGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + + + L +G LR++ +D G + L + F+ +P ++++ Sbjct: 65 LLERVGPWLSEYDAIENGLVAEQAAAAGILRVSAPVDFGSSRLIQPITAFMAQWPAVEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ +D+ + D +R+ + + SSLI R+L + A+P YL P + Sbjct: 125 LEFSDRMVDLVDEGFDLGVRIGQ-LTDSSLIARRLAPAPLKVLASPAYLNAAGAPEHPYD 183 Query: 186 LDKHNLI 192 L +H+ I Sbjct: 184 LARHDCI 190 >gi|330901197|gb|EGH32616.1| LysR family transcriptional regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 304 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 123/276 (44%), Gaps = 25/276 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR SF A ++ +S S++S + GLET +GI+L R R +TLT G +L + Sbjct: 14 FLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGIRLLNRTTRSVTLTAAGEELQGLI 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S + + L +P+G++R+ D + LL L F+ YPDI++ L + N Sbjct: 74 SSPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFVDRYPDIEVDLTVTN 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +DI D D IR + + + QR + AP YLK P +L +H Sbjct: 134 RMVDIIGDGHDAGIRFGGTVPADMIAQRLSPDVAWAVVGAPDYLKRFGIPKHPSDLYQHR 193 Query: 191 L--ITFGDLIPKCMEDFNWLAT-------VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I G+ ++W + +D P + ++ + + G G+ Sbjct: 194 CLRIRLGN-----ARIYHWQFSKEGQQLEIDAP------GAVTIDETRVGVAMAMRGVGL 242 Query: 242 ALLPDYIVK---DNPNLVRIMEDVI--TPSFTVYFC 272 +P ++V+ +L R++ED P F +Y+ Sbjct: 243 MYVPAWVVERQIAEGSLHRVLEDWTHHDPGFHIYYS 278 >gi|296115316|ref|ZP_06833955.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295978139|gb|EFG84878.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 308 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D++ + VF +G F AAE+L LS+S++++ I +E +G++LF R R LT Sbjct: 1 MRDDFEGISVFLKAVEAGGFARAAERLSLSRSAVAKTIGRIEKRLGVRLFQRTTRRHNLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++ Q L+ GKL + LG+ ++ L + + Y Sbjct: 61 EEGHIYYERCVRAREEVRVGQSVLEFGRFNVKGKLTVIMPTVLGRYCVEPFLLDLAIKYE 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 ++++ L + + ++ + D AIR R+P +S L RK+ AAP YL C Sbjct: 121 NLELDLRFSDLEHNLVTERFDLAIRNGLDREP--TSFLNVRKIAAQRQVLCAAPSYLLRC 178 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 S++++ H+ + + C+ F + + + P LQ ++ ++ + Sbjct: 179 GPVHSLEDIWHHDALIYWKNEQPCLWKFRDIGGTEFKL--PPKWRLQFDNQEAMADAALR 236 Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPE 275 G GIA LP +++ ++ N LV +++++ S +Y +P+ Sbjct: 237 GMGIACLPRWLIHNHLNEGRLVSLLDELPLASQDIYAVWPQ 277 >gi|268590611|ref|ZP_06124832.1| transcriptional regulator, LysR family [Providencia rettgeri DSM 1131] gi|291314003|gb|EFE54456.1| transcriptional regulator, LysR family [Providencia rettgeri DSM 1131] Length = 299 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 9/295 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + K+ F V SGSFT AA+ L LS+S +S I LE ++ + L R+ R + LT Sbjct: 1 MQRNLKKIISFLQVVDSGSFTKAADILGLSRSMVSVDIKQLEAQLNVSLLTRNTRNIALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + + ++++ + Q +G LR ++T + GQ + L EF LYP Sbjct: 61 EVGKHFYDDFKRIQNQIDEAFEKSQNLGTNIAGLLRFSSTSEFGQRFILPLLPEFCRLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++Q ++ D+ + D +IRL +++SSL +KL ++ + P +LK + P Sbjct: 121 KLRLQYSFNSSLDDLITEKLDLSIRLGN-LKNSSLKMKKLGEYEIYLVSTPEFLK--KYP 177 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + Q D N+ + + +L + + P I ++ +++ + VL S Sbjct: 178 IK-QLTDLANVPWINHALLNWQDPQYFLQNSKNEKYYLPLIKNQYESNSAAVIHHMVLAS 236 Query: 240 -GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+ P ++V D+ LV ++ + P + YP K +AF +F+ Sbjct: 237 LGIAICPAWMVDDDLQHERLVHVLPEYRLPKQNIQLLYPNTFVLPAKTRAFIDFL 291 >gi|221369388|ref|YP_002520484.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] gi|221162440|gb|ACM03411.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides KD131] Length = 315 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 14/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++AR SF+ A+ L LS S++SR+++ LE +G++L R R ++LT +G + Sbjct: 6 LSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAYY 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + L + +P+G LRI T+ G+ L + F ++P +++QL+ Sbjct: 66 GAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQLL 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ + D IR P ++ R L AAP YL+ P S+ +L Sbjct: 126 LTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDLQ 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 +H+ I ++ + + ++ D IGE S L N + + + G GI Sbjct: 185 QHSCI----VLRQDHDAYDVWRFDD--IGEASPSAKVSGELSTNDGEIALAWVLDGQGIM 238 Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 L ++ + + +R++ + ++ YPE + K++ F + + RD Sbjct: 239 LRSEWDIAQHVREGRLRLLLPHYRQTANIHAIYPERHNLSAKVRVFADHLAAHVRD 294 >gi|77457171|ref|YP_346676.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381174|gb|ABA72687.1| LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 293 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 12/291 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ F V +GS T AA+ L +++ +S + LE E+G+ L R+ R L LT+ G + Sbjct: 5 DRFDTFKAVVEAGSLTAAADTLGQTRAVVSFNLKRLEEELGVTLLTRNTRQLALTDAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +R L+ ++ ++E+ + S G LRI TT++ + L+ F P + Sbjct: 65 FYR---RCLRTLDEARLAVEEARSEHSQLKGTLRITTTVEFALAQVVPALEVFRQQQPQL 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I L + D+ + D AIRL + + S+L +L T + A AAP ++ + Sbjct: 122 NIHLSTSSTHADLISERFDLAIRLGRML-DSNLRAVQLSTFEVFAVAAPGLIERFAPVDT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + L+ + G + + D + +P +P + + ++ ++ + + G G+A Sbjct: 181 LAVLESMPTLGHGRVPEMTVSDPAGTEHIYQP--KPGTTAIVADNSATLRAFALTGQGVA 238 Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +LP ++++ D L R++ D VY YP+ K++AF +F+ Sbjct: 239 ILPQWLIQEDLDAGRLQRLLPDYRFAQQGVYALYPDTRHLPLKVRAFIDFM 289 >gi|315499060|ref|YP_004087864.1| transcriptional regulator, lysr family [Asticcacaulis excentricus CB 48] gi|315417072|gb|ADU13713.1| transcriptional regulator, LysR family [Asticcacaulis excentricus CB 48] Length = 298 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 18/290 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F AR GS T AA +L+L+QS++SRQI+ LE ++ ++LF+R + + LT G Sbjct: 14 LAAFEATARLGSVTAAARELNLTQSAVSRQIAALEAQLEVELFHRERQTVRLTAGGEAYA 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R E + + + L+ + G L++A G L L +FL IQ+ LI Sbjct: 74 REVREALKIISSASLSLRANPH--GGTLKLAILPTFGTRWLAPRLPDFLRNNSGIQVNLI 131 Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 D + D AI + P S+L++ ++V Y EP ++ Sbjct: 132 TRIGVFDFRSEGLDAAIHFGRPGWPGAESALLRPEVVIPACAPELKAQY--GFAEPADLR 189 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 + +L + P E NWL P + + + + ++ Q G G+ALL Sbjct: 190 QAPLLHLTS----RPDAWE--NWLEAHSAPSDH--VHGMLFDQFATLAQVARSGLGVALL 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 P ++ ++ + +LV +E ++ + +P N LKAFR+++ Sbjct: 242 PQFLAEEEFASGSLVPALEAPLSTGEAYHLVWPAERSNHPPLKAFRDWLL 291 >gi|158424634|ref|YP_001525926.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158331523|dbj|BAF89008.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 330 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 1/192 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++ DW+ R F V R+GS + AA +L L+Q ++ R+I LE +G LF R GL T Sbjct: 28 LASDWENQRAFLAVLRTGSLSAAARELGLAQPTVRRRIEALEQALGTPLFTRSPAGLLPT 87 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E L + Q + SG +RI + +G +L G ++ + +P Sbjct: 88 EAARTLGPHAEAMAAAAAAFQRAASGPRAEISGTVRITASDMIGTQVLPGLIEPLMARHP 147 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + +++ L N+ D+ AD A+R+ +P Q S+L+ R + + + +A P +++ P Sbjct: 148 RLTLEVHLSNRTQDLLRQEADIAVRMVRPTQ-SALVIRAIGIVRLGLFATPAFVERHGMP 206 Query: 181 LSIQELDKHNLI 192 + +L ++ LI Sbjct: 207 ERLSDLSRYPLI 218 >gi|119478548|ref|ZP_01618491.1| transcriptional regulator, LysR family protein [marine gamma proteobacterium HTCC2143] gi|119448452|gb|EAW29701.1| transcriptional regulator, LysR family protein [marine gamma proteobacterium HTCC2143] Length = 310 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 17/296 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + + +F V + S+T A++ + +S++SR+I+ LE + ++L R++R L+LT++ Sbjct: 2 LDINAMLLFARVVAAQSYTQASKDTGIPKSTLSRKIAQLEEHLDVRLLQRNSRSLSLTDE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + ++E ++ ++ + +G L++ + Q++ FL YP I Sbjct: 62 GRLVYEKALNILSEVEAVELSVESARQDVAGTLKVLFPVSFDQSIATSLCTGFLKKYPKI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + DID+ D A+ P+ SS+LI + L M A+P YL+ P S Sbjct: 122 ETIFQFSDSDIDLISQNFDIAVAF-GPLSSSNLIAKPLFQRDMVLVASPAYLEKQGTPTS 180 Query: 183 IQELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 I L H I G+ + P L T +P+ +C VNS ++ Q + Sbjct: 181 IAALADHQGILLGNSSSMPIWPLGTGTQKSLVTF-----QPK-AC--VNSAAAVKQLVMA 232 Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GIALL K LV+I+++ Y Y + + ++ F +++ Sbjct: 233 GLGIALLSASQCKLGLQQGTLVQILKEFPLEPLKAYGLYSSRHQLSPRISCFLDYV 288 >gi|77458830|ref|YP_348336.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382833|gb|ABA74346.1| LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 302 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 14/293 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V +G F A L + +S +SR+I+ LE +G +L R R L LT G Sbjct: 3 DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTAVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + R + + E + S +P G+LR+++ L +L + FL YP +Q Sbjct: 63 ERYLRHCQAMLLEAEMADETVASMSSEPRGRLRVSSPTGLAHEMLPVVISNFLGKYPQVQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ L N+ +D+ + D A+R+R+ + L+ R+L M A+P +++ L Sbjct: 123 LEVTLINRRVDLITEGIDVALRVREHGDEEPMLVTRRLRQAQMVVVASPSFVQG----LE 178 Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240 I D NL G L M L + + L ++ ++ + + CVL G G Sbjct: 179 INHPQDLKNLPVLGALEADRMVHVRLLDQHGKSCDLALEARLGIDDFI-VRKACVLAGQG 237 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LLP + +N LV+++ D P + YP G + A R +I Sbjct: 238 FTLLPMMYCETELNNGTLVQLLPDWSLPGGWLQAVYPH---RRGVMPAVRAWI 287 >gi|218675396|ref|ZP_03525065.1| probable transcriptional regulator protein, LysR family [Rhizobium etli GR56] Length = 304 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 20/291 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+ Sbjct: 15 LAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERSSRGVILTEAGTDYA 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + LQ + + + +L +A G L + F+ +P+I + Sbjct: 75 RAIAGALAEIRSA--SLQAMTKQHNDQLNLAILPTFGTRWLMPRIPRFVARHPEITLNFA 132 Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 D D D AI + +P +S+ L++ + + A+P +L++ L Sbjct: 133 TRIGVFDFDRDDIDMAIHIGQPDWPGAESTFLMEEMVAPV-----ASPSFLRS-HPILKA 186 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 ++L + L+ P F V+ G P ++ + ++ Q C+ G G+AL Sbjct: 187 EDLLRLPLLQMASR-PGAWSHFFESLQVN---GTPS-QAMRFEQFSNVAQACIAGLGLAL 241 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 +P +++ N LV+ + Y P + K+ + AFR ++ Sbjct: 242 MPLFLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVAAFRAWLL 292 >gi|254695312|ref|ZP_05157140.1| LysR family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261215682|ref|ZP_05929963.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260917289|gb|EEX84150.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 306 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G L R R + LTE G H Sbjct: 8 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQRTTRQIALTEAGQGYH 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 68 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + AAP YLK P +I++L Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ NS + + + G GIA + Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLSGLGIAQRSTW 240 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287 >gi|77465387|ref|YP_354890.1| LysR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463790|ref|YP_001044903.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|77389805|gb|ABA80989.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides 2.4.1] gi|126105601|gb|ABN78131.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides ATCC 17029] Length = 315 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 14/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++AR SF+ A+ L LS S++SR+++ LE +G++L R R ++LT +G + Sbjct: 6 LSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAYY 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + L + +P+G LRI T+ G+ L + F ++P +++QL+ Sbjct: 66 GAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQLL 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +++ + D IR P ++ R L AAP YL+ P S+ +L Sbjct: 126 LTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDLQ 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242 +H+ I ++ + + ++ D IGE S L N + + + G GI Sbjct: 185 QHSCI----VLRQDHDAYDVWRFDD--IGEASPSAKVSGELSTNDGEIALAWVLDGQGIM 238 Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 L ++ + + +R++ + ++ YPE + K++ F + + RD Sbjct: 239 LRSEWDIAQHVREGRLRLLLPHYRQTANIHAIYPERHNLSAKVRVFADHLAAHVRD 294 >gi|315123246|ref|YP_004065252.1| LysR family transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315017006|gb|ADT70343.1| LysR family transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 294 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 132/270 (48%), Gaps = 10/270 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F ++GS + AA L ++ S+IS+QI +E +VG+ LF R R LTLTE G + Sbjct: 9 LNIFVRTVQTGSMSKAAADLLMTTSAISQQIKQIELDVGLSLFNRSPRELTLTEAGELYY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ T +LQ PSG+L++A + G LL +K + + DI + L Sbjct: 69 QSCLQMLAVATATSEQLQHLQNCPSGQLKLAAPVGFGGGLLSEPVKHLISQFSDIDVHLT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D + + P++ S+LI R+L + + ++ + +++ +L Sbjct: 129 LSDEPIDMIRTGIDLVLAI-GPLEDSNLIARQLASWPLILCVHKNHALAQQPKITLDDLK 187 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN I + P +T + + RI+ +N+ +++Q+ + G A+LP+ Sbjct: 188 AHNRIAHIAVDPALTHLTRGESTT---LPKARIA---INNMQTVIQFVLDELGYAILPEP 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274 V++ L+ I D P + V+ P Sbjct: 242 EVRNFLATGELLEICTDWQLPHYDVFALTP 271 >gi|167564820|ref|ZP_02357736.1| transcriptional regulator, LysR family protein [Burkholderia oklahomensis EO147] Length = 304 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 132/294 (44%), Gaps = 14/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +GIKLF R RGL LT G Sbjct: 13 NALRTFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGIKLFERLPRGLALTADGLA 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 S+V L + + VK + I+TT L L F +PDI I+ Sbjct: 73 YF---SDVQRALNLIG-DATDRLVKRRSSVTISTTPSFASRWLIPRLASFGDEHPDIDIR 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D++ D D AIR KP L+ R L + ++A +P L + S ++ Sbjct: 129 VIADSQFATFRNDGVDLAIRYGKPPFGKGLVTRFLFPVDIYAVCSPSLLTSPGALASPRD 188 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P+ + +D P PR + S L+I + G G+AL+ Sbjct: 189 LAGHVLLHDAHDLWPEFLAAMPERVAID-PHRGPRFN----QSSLAI-DAAIAGHGVALV 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 D +V + L R+ + + S + YP + + ++ AR Sbjct: 243 SDQLVGRDIEAGRLCRLFDFALPLSVGYHIVYPNEPRRPNDIATMEAWLIRHAR 296 >gi|152994181|ref|YP_001339016.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835105|gb|ABR69081.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 301 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 2/188 (1%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F VA++GS + AA +L L+ S++SR ++ +E +G++L R R L LT +G Sbjct: 11 EMETFLTVAKTGSLSGAARELGLTPSAVSRMMTRIEKRLGVRLLVRSTRKLYLTSEGESY 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE T+ + + + PSG ++++T + + KEFL YP+I+I++ Sbjct: 71 ALAARRILKDLEETERAIADRA-SPSGLIKVSTPTAYSRLTMIPLYKEFLQRYPNIKIEV 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +K +++ + D AIR P+ S+L R+L A P+YL P + +L Sbjct: 130 EVSDKISNVADGHIDVAIRF-GPLPDSNLTARRLGETGRTIVATPNYLAQAGSPKTPADL 188 Query: 187 DKHNLITF 194 N + F Sbjct: 189 QHFNCLDF 196 >gi|77458589|ref|YP_348094.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382592|gb|ABA74105.1| putative LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 301 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 12/288 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F +V +GS T AA QL ++S +S++I+ LE +G + R R LTE G + Sbjct: 1 MQSFVMVVDTGSITEAARQLGTAKSMVSQRIAQLEKRLGSIVLER-GRQARLTEAGEVFY 59 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++E + + G LR+A + L L F + YP++++ + Sbjct: 60 RYCVRILSEVEEAEDAVLAFQSSLRGSLRLAAPMAFSIRYLTPILSSFAVRYPELRLDIE 119 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186 D++ +++ + D AIR+ + + SSL+ K +T + H A+P YL P + QEL Sbjct: 120 FDDRHVNLHEERYDAAIRIGE-LPDSSLVA-KTITANRHIICASPDYLAAHGTPQTPQEL 177 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 +H + + + P M W V+ + R+ C ++ N+ +M+ G G+A+LP Sbjct: 178 SEHFAMLYVNREPHGM----WTLPVNNALESFRVRCRMRTNNGHQLMEAAKAGMGLAILP 233 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + L ++ + Y + + + KL+A +F+ Sbjct: 234 TFLAAQAIVDGELQEVLAPYAPRGGNISAVYRRSQRASPKLQALTDFL 281 >gi|107026665|ref|YP_624176.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692145|ref|YP_837678.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896039|gb|ABF79203.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116650145|gb|ABK10785.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 319 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 7/290 (2%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60 + +WD LR F VAR+ + AA++L + ++++R+I LE +G LF + + G TLT Sbjct: 11 NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 +G +L + +++ ++ + SG +RI +T G L L F +P Sbjct: 71 AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + L+ +++ AD AI L +P + ++ KL + YA YL Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATHDYLATHPPI 189 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H I++ D + N L +DR + + L+ S ++ + + G G Sbjct: 190 TCTDDLARHAFISYVDDLAFS----NELLYLDRAV-PGATAGLRTTSVIAQVFAALQGGG 244 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ P LV ++ + + + + E L+ ++ A +++ Sbjct: 245 LAILPCFMAATQPALVPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYL 294 >gi|254503524|ref|ZP_05115675.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222439595|gb|EEE46274.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 305 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 10/297 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F V G+ + AA L +S + S +IS LE + ++LF R R L+ TEQG+ Sbjct: 5 ENIRTFLRVYELGNMSAAARDLRISSAVASSRISQLEEHLNVRLFQRTTRALSPTEQGNI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +R +++ +E + E+ + P G L +A I +GQ+L+ + F +P I I+ Sbjct: 65 FYRGATKIMEAVEEAEAEITNMTRSPRGTLFVAAPISMGQSLIAPAIPTFKADHPLIDIR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A L P + S+L RK+ A+P Y+ +P S + Sbjct: 125 LRLSDRKVDLTGEGLDAAFFLGVP-EDSNLKIRKIADCQRILCASPDYIAKTGQPASSAD 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 L P E F W ++ P G RI + + + + + G GI Sbjct: 184 LSTGKFDCLNMRYPGAPE-FQW--PLETPEGVKRIPVKGPFESDHGDVLTAWALEGHGIV 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 L P + V + + LV+++E + Y + K++ F +F+ +D Sbjct: 241 LKPVFEVAEHLKSGRLVQVLESAPPIPVQMACLYTHRRRQDPKVRLFIDFMVSHIQD 297 >gi|209548369|ref|YP_002280286.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534125|gb|ACI54060.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 306 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 1/197 (0%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + +D++R F VA G+ + A +L + QS+++R ++ LE VG+ L R R +TLT Sbjct: 4 VGLSFDRMRTFVRVAERGNLSMVARELDVGQSTVTRHLNKLEEAVGVPLLSRTTRRVTLT 63 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+GS+ + ++ +E E +++ P+G +R++ T LG + + EF +P Sbjct: 64 EEGSRYYTNCLQILRLVEQAAEEARDARQAPAGGVRLSCTAALGVMHVTRMIFEFQDRHP 123 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DI++ L L ++ ID+ + D A+RL P+ S++ + AP YL P Sbjct: 124 DIRVDLNLTDERIDLVREAVDVALRL-GPLADSAMKLHAIGESQRLLVGAPAYLSARGRP 182 Query: 181 LSIQELDKHNLITFGDL 197 +L ++ + ++ Sbjct: 183 QRPADLSRYETVVMSNV 199 >gi|153007799|ref|YP_001369014.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559687|gb|ABS13185.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 304 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 8/290 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V G+ + A S + S +I LE +G++LF R R LT TE G Sbjct: 5 DNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ + + E + P G +RI + G+ L+ + EF YPDI+++ Sbjct: 65 FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDKYPDIEVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + ++DI + D A +L +++S+L R ++ AAP YL+ P S E Sbjct: 125 LRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVICAAPAYLEKHGVPQSPDE 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L DKH+ + P E F L T + + + Q+ + G GI Sbjct: 184 LLGDKHDCLLL--RFPGSKEYFWSLQTAEGLRKFEVTGPFDSDDGDVLTQWALGGRGIIN 241 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + VK+ + LV I+E + YP K++ +F+ Sbjct: 242 KPLFEVKEYIRDGRLVPILESTPPAPIQLAAIYPHKRFQDPKVRLIIDFM 291 >gi|315500544|ref|YP_004089346.1| transcriptional regulator, LysR family [Asticcacaulis excentricus CB 48] gi|315418556|gb|ADU15195.1| transcriptional regulator, LysR family [Asticcacaulis excentricus CB 48] Length = 302 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 10/290 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + WD LR+ + R G+ + A + L LSQ ++ R++ ET G +LF R RGL T Sbjct: 14 NLSWDDLRLVLAIHREGTLSAAGKTLDLSQPTMGRRLEAAETAFGERLFQRTTRGLVATG 73 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + ++ L + SG +R++++ ++L + F+ +P Sbjct: 74 LGLAVAEHARAMEDEVLALSRRLSGAQQALSGIIRVSSSEWFFNHVLMPVFEGFMADHPQ 133 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+ ++D + +D+ AD R + ++ +QRKL I YA+ YL P Sbjct: 134 VVIEAVVDTRALDLDRREADLVFRFGGFTECNA-VQRKLTHIDYGLYASASYLNRHGLP- 191 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 E + H LI + + + D WL + P+ P + NS V G G+ Sbjct: 192 EAGEGENHQLILMDEALGH-LSDVIWLQRL-LPLARP---VFRSNSRDLQALAAVGGRGL 246 Query: 242 ALLPDYIVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 A+LP I + P LV + TP V+ Y LK +L+A +++ Sbjct: 247 AVLPTRIAR--PLGLVPVDLGEETPGREVFVGYHADLKPMARLRALIDYV 294 >gi|146338102|ref|YP_001203150.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190908|emb|CAL74913.1| Putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 300 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 30/286 (10%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR G F AA ++++SR+++ LE + I+L R R L LTE+G L T Sbjct: 13 FTLVARYGGFGRAARASGRPKATLSRRVAELEASLDIRLIERGGRALKLTEEGRALFERT 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L+ T + P G+LRI+ + Q + F L YP++++ + D+ Sbjct: 73 GALLTELDETVGAIASGGQTPRGRLRISAPLLFSQTAMGKLAASFALRYPEVRLDVTTDD 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQR-----KLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D+ + D IR+ P SLI R ++V + A A P + R Sbjct: 133 RTVDMVEEGYDLVIRV-NPAPDDSLIGRIFLRDRMVVVAHPALARPDDATSVR------- 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242 ++ D I +W V P G RIS L++ S + + G G A Sbjct: 185 ----AIVRSSDQI------TSW--AVTGPAGPARISVEPILRLTSLIMVRDAVRAGVGAA 232 Query: 243 LLPDYIVKDNPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286 LP + + R++ DV P ++ YP + ++ AF Sbjct: 233 CLPLSLASHDLAAGRLVHWADVDAPPVALWTLYPSRRLLSPRVSAF 278 >gi|194367725|ref|YP_002030335.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350529|gb|ACF53652.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 297 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 103/192 (53%), Gaps = 3/192 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +R F V +GSFT AA+ L +S+++ ++ + LE + ++L R R +++T G+ Sbjct: 4 FEAMRAFARVVETGSFTRAAQTLQISRTTATQLVQQLEAHLRLRLLNRTTRRVSVTADGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + +LE + L +++ +P G+LR+ + L L +F YP+IQ+ Sbjct: 64 AYYPRIARLLAELEEVEGGLGDAATQPRGRLRVDVPGPYARLRLVPALPDFQARYPEIQL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++++D+ D DC IR P +L+ R L + + +A+P Y++ P + Sbjct: 124 DIGVSDREVDVIADNVDCVIRGGTPA-DPALVARPLGALPIGFHASPGYVQRFGLPADPR 182 Query: 185 ELD--KHNLITF 194 L+ H+++ F Sbjct: 183 ALEGPDHHMVGF 194 >gi|73541604|ref|YP_296124.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gi|72119017|gb|AAZ61280.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] Length = 281 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 19/283 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + WD L + R+GS++ A +L ++ ++ R+I LE +G + R LT Sbjct: 5 TVSWDDLLTLSTLIRAGSYSACARELDITHATAIRRIRRLEEALGKPVATRSEGAFELTS 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ E++ + SG +RIA T LG + L L +PD Sbjct: 65 AGRSALTAARQMEQSAGRLLREIEGAGSGVSGVVRIAATAALGSHFLTPRLPGLYAAHPD 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L LD++ ++ +A AIRL +P + + QR + T+ Y + + PL Sbjct: 125 IVVRLELDDRVASLARRHAHLAIRLARPKEDDVVAQR-VGTVRFGLYGSASVPMDDSTPL 183 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L+ G IP+ W P+ R N+ L+I + G G Sbjct: 184 C-------ALLDEGYDIPEA----TW------PLHAKRRIAFHANNMLAICEGVRAGLGT 226 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 ALLP Y+ +++ L R++ +V ++ YP + + + Sbjct: 227 ALLPHYVAREDAGL-RLLHEVPEVMREIWLAYPTEFRGASRFR 268 >gi|26988583|ref|NP_744008.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] gi|24983357|gb|AAN67472.1|AE016374_4 transcriptional regulator, LysR family [Pseudomonas putida KT2440] Length = 312 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 20/297 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L F A GSF AA +L L+ +++ + ++ LE +G++LF R R LTLTE G Sbjct: 6 FSALECFIRSAEVGSFAEAARRLSLTPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + S+ + ++ L + +P+G LR++ G+ + L EFL YP I Sbjct: 66 RFLGEVSDSFRTIQYAVANLASAEGQPAGSLRVSMGTVFGRLYVLPLLGEFLRRYPAITP 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 DN+ +D+ D AI + ++ RKL H AAP YL+ Q Sbjct: 126 DWHFDNRQVDLIGQGFDAAIGGGFEL-PPGVVARKLTPAHRVLVAAPAYLQRHASIEDPQ 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM---QYCVL---G 238 L +H+ I P+ +W T +P LQ+ +++ C + G Sbjct: 185 ALQRHDGILVRS--PQTGRVRSWPLTSRWQAQQP----LQLRQAMTMSDSDAACAVAEQG 238 Query: 239 SGIAL--LP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIAL LP Y++ L+R++ D + + E GK +AF +F+ Sbjct: 239 LGIALVSLPFAVPYLLAG--RLLRVLPDWYVDDGHISLYFAEHKLLPGKTRAFIDFV 293 >gi|320656120|gb|EFX24032.1| transcriptional activator TtdR [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 310 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTHPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|283786511|ref|YP_003366376.1| glycine cleavage system transcriptional activator [Citrobacter rodentium ICC168] gi|282949965|emb|CBG89593.1| glycine cleavage system transcriptional activator [Citrobacter rodentium ICC168] Length = 305 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AAE+L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E++ +L +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNSAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++ D D D AI R P L KL ++ +P L + S Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239 ++L KH L L D+ T R +G I+ Q + ++Q + G Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234 Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIAL + + + R++ DV+ Y ++ GK+ AFR +I KA Sbjct: 235 GIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292 >gi|241764668|ref|ZP_04762681.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241365888|gb|EER60531.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 319 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/301 (22%), Positives = 136/301 (45%), Gaps = 26/301 (8%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F V G F A L + +S +SR++S LE ++G++L R R L+LT+ G Sbjct: 7 DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSELEAQLGVRLLQRTTRKLSLTDVG 66 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R + + + + +P G +R++ + L Q +L + EFL +P ++ Sbjct: 67 EAYLRHCQAMRESAQAAADTVAQVQTEPQGTVRLSCPVTLAQTVLAELMPEFLARWPRVR 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I++ + N+ ++ + D A+R+R + S S++ ++L A+P L P + Sbjct: 127 IEMQVSNRAVNPVEEGVDVALRVRPSLDDSGSMVVKRLDDATQILVASPDLLARQGTPRT 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISCLQVNSYLSIM 232 +++L + + I + + M R IGE PR + L++ Sbjct: 187 LEDLTRLDSIAMSAVDGRSML---------RLIGEGGREQTLHHHPRYVA---DDLLTLK 234 Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G+G+ LPDY+ ++ LV ++ P V+ +P + ++ F +F Sbjct: 235 FAALAGTGMCWLPDYMCQEEVRAGRLVHLLPGWAPPRGIVHAVFPSRRGLSPAVRRFLDF 294 Query: 290 I 290 + Sbjct: 295 L 295 >gi|218529953|ref|YP_002420769.1| LysR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218522256|gb|ACK82841.1| transcriptional regulator, LysR family [Methylobacterium chloromethanicum CM4] Length = 297 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 129/282 (45%), Gaps = 21/282 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VA+ G F AA ++++SR+++ LE + ++LF R AR L LTE+G LH T Sbjct: 9 FNLVAQHGGFGRAARAAGRPKATLSRRVAELEASLALRLFERGARILKLTEEGRALHERT 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L T + +P G+LRI+ + Q+ + F L +P++++++ ++ Sbjct: 69 KVLLMELSETAAAIATGGDRPRGRLRISAPVLFSQSAMAKLAVGFALKHPEVRLEVTTED 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D IR+ P SL+ R + + AAP ++ + Sbjct: 129 RAVDMVEEGYDLVIRV-NPDPDESLVGRIFLRDRLVVVAAPSMVRPTGD----------- 176 Query: 191 LITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQY---CVLGSGIALLPD 246 T +I ME +W + P G ++ V S S+M G+G LP Sbjct: 177 -ATAPAVIRGPMEGSMSW--NMKSPAGRSSVTAEPVLSLPSLMMVRDAVRAGAGAGRLPL 233 Query: 247 YIVKDNPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286 +V + R++ D+ P T++ YP + ++ AF Sbjct: 234 SLVSHDLAAGRLVLWGDLDRPEITLWTLYPSRRLLSARVSAF 275 >gi|103488617|ref|YP_618178.1| LysR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978694|gb|ABF54845.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis RB2256] Length = 308 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 122/292 (41%), Gaps = 13/292 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA SF+ AA L +S S+IS+ I LE VG LF R R + LT+ G Sbjct: 13 DGIEAFLRVAERRSFSAAAADLGVSPSAISQTIKALEARVGAPLFMRTTRSVGLTQAGEM 72 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + Y L + +P+G+LRI Q L + + F YP+I+++ Sbjct: 73 FFERAAPAYSGLADAYEAARNLGNRPAGRLRINLMRGAVQPLFEPIIAGFCETYPEIELE 132 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D+ D+S D +R+ + + + + R AP Y P + + Sbjct: 133 IYADDALSDLSAGGFDAGVRMGESLDADVVAVRLTGPFRFVVAGAPSYFARHGRPATPEA 192 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L +H + F G L+P E N D + P I VN + + + G + Sbjct: 193 LREHRCVRFRLATGALMPWTFEKGNR--EFDVAVTGPVI----VNDWSASLVAMRTGVAL 246 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + + D + ++ D + ++ YP + KL+AF +++ Sbjct: 247 GMMAEPMATAMVDAGEIELVLTDYAASTSGLFLYYPGRKQVMPKLRAFIDYV 298 >gi|330879634|gb|EGH13783.1| transcriptional regulator, lysr family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 301 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 136/300 (45%), Gaps = 20/300 (6%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF+ AA L +S S++S + GLE+ + ++LF R R + LTE G +L Sbjct: 8 ELTAFVAIAEQRSFSGAARMLGVSPSALSHSMRGLESRLELRLFNRTTRSVALTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R + LE ++ PSG +R++ + + L++ + FL P I I+ Sbjct: 68 FRRVQPLLGDLECAVNDVTSERNTPSGLIRLSASESSFKLLIRHVMPRFLKDNPQIHIEC 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185 + D++ +DI D D IRL + + R I A A+P YL P++ + Sbjct: 128 VADSRLVDIVADGFDAGIRLFDDVPRDMIAVRFGPDIRFAAVASPEYLSRHPAPVTTPHD 187 Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L H I F G L ++ A++D + P + +++ + + + G GI Sbjct: 188 LKAHRCIRFRFASGTLFRWDLDHQGRSASID--VDGP----MTMDNINLMAEAALAGIGI 241 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297 A LP++ V ++ LV ++ D P +T YP L+ F + RDW Sbjct: 242 AWLPEHQVAEHLQAGRLVHLLPD-WGPRYTGACLYYPANRHPPMALRMFAEAL----RDW 296 >gi|322514465|ref|ZP_08067505.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC 25976] gi|322119628|gb|EFX91696.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC 25976] Length = 298 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 138/290 (47%), Gaps = 14/290 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V + SFT AA+ +S + S+ I+ LE + ++L YR R +T TE G Sbjct: 5 NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLYRTTRKITPTEAGLF 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++L+ + + + GK+ I+ +D G + L +F+ YP+IQ+ Sbjct: 65 YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFIATYPNIQLN 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D +R+ ++ SS++ +++ + A+P YL P +++ Sbjct: 125 IEFSDRRVDVVAEGYDLVLRIGS-LEDSSIVAKRIAQSELILLASPEYLDKHGTPEILEQ 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +H+ + + + WL D+ I +P L N Y +++Q G GI Sbjct: 184 LAQHSCLLYEN-------HQQWLFVDNDQKIKFKPTPHILSNNGY-ALLQMAKAGQGIVN 235 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ KD+ NLV ++ S + YP + K+K F+ Sbjct: 236 LPLFLAKDDLTAGNLVEVLPQYKQNSIDISILYPHRRYLSPKVKVLIEFL 285 >gi|320325256|gb|EFW81323.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320327761|gb|EFW83769.1| LysR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 306 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 131/287 (45%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F+++A+ GS A +L ++ +IS+++S LE +G +L R R ++LT +G Sbjct: 7 LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGELYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ + + SS P G +R+ ++ G+ + L F YP++QIQL Sbjct: 67 SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+++ D IR + ++ RK+ + A+P YL+ P + EL Sbjct: 127 ISDHPLDLAIHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN I + P + F+ + C N + + + G GI L + Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + L ++ED VY YP+ L + +++ +F+ Sbjct: 243 WEIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFL 289 >gi|307729427|ref|YP_003906651.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583962|gb|ADN57360.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 323 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 21/286 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR S AA ++++SR+++ LE +G++LF R +RGL LT++G L+ T Sbjct: 9 FNLVARYESLGEAARATGRPKATLSRRVTELENSLGLRLFERGSRGLKLTQEGRALYERT 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L + + +P G+LRI+ Q + + F L YPD+++++ ++ Sbjct: 69 GALLSELTESAAAIASGGEQPRGRLRISAPALFSQIAMGKLVATFALKYPDVRLEVTTED 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK-NCREPLSIQELDKH 189 + +D+ + D IR+ P +LI R + + A P + + + + +H Sbjct: 129 RPVDMVEEGYDLVIRV-NPDPDENLIGRVFMRDRLVVVARPDMARPKGKSSVPVVVRAEH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246 + +W V P G+ RI+ V +S + + LG G A LP Sbjct: 188 ERVA------------SW--QVTGPRGQARIAVTPVACLSSLIMVRDTVRLGVGAARLPL 233 Query: 247 YIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V + R+ DV P ++ YP + ++ AF + I Sbjct: 234 SLVSHDIAAGRLAHWGDVEGPDIALWALYPSRRLLSARVSAFLDHI 279 >gi|260599888|ref|YP_003212459.1| putative transcriptional regulator [Cronobacter turicensis z3032] gi|260219065|emb|CBA34420.1| Putative transcriptional regulator [Cronobacter turicensis z3032] Length = 303 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 132/302 (43%), Gaps = 19/302 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M + + L F VAR GSFT AA QL ++QS++S+ I+GLE + ++L R R ++LT Sbjct: 1 MKRNLNDLFSFVTVAREGSFTRAAAQLGVTQSALSQAIAGLENRLKLRLLTRTTRRISLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +L + ++E L KP+GK+RI + LL L L YP Sbjct: 61 AAGERLLEAIGNRFDEIEAELDMLSALRDKPAGKVRITCDPHVLHALLLPKLTPILRDYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DIQ++ ++ DI D D +RL I + + M A A+P Y P Sbjct: 121 DIQMEFDANHGFRDIVADRFDAGVRLGGTIDKDMIAVPIGPPMRMAAAASPAYFAAHPVP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L HN I + + W D P+ L N+ I+ + G Sbjct: 181 QTPHDLVHHNCINL--RMTSAGGLYVWEFDDKDGPVNVRVDGQLIFNTSSHIVHAALDGL 238 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP-------------EALKNTGKL 283 GIA LP+ D+ NLVR++E P Y YP EALK TG Sbjct: 239 GIAFLPEGEFDDHFNAGNLVRVLETWCAPFPGYYLYYPSRKQPSPAFSMVVEALKETGSR 298 Query: 284 KA 285 KA Sbjct: 299 KA 300 >gi|167590163|ref|ZP_02382551.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 313 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 97/184 (52%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V SGSF AA ++ +++S++++ ++ LE +G++L R R L+LT++G + Sbjct: 11 FVEVVESGSFAAAALRIGVTRSAVAKIVARLERRLGVRLLQRTTRRLSLTDEGLVYYEQC 70 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 V +L T+ L +PSG+LRI+ + G+ + ++ + +P +++++ + Sbjct: 71 RRVLAELGETEAALDAGRREPSGRLRISAPVLFGRQCVAPVMRRLVERHPRLEVEMSFSD 130 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + D+ D D A+R+ + +++L+ R L M A+P YL P ++L H Sbjct: 131 RIADLVNDGFDVAVRVGPLVDTTALVCRPLGMQQMGICASPAYLAQHGRPAGFEDLASHV 190 Query: 191 LITF 194 I + Sbjct: 191 GIAY 194 >gi|330942143|gb|EGH44799.1| LysR family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 304 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 25/276 (9%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR SF A ++ +S S++S + GLET +GI+L R R +TLT G +L + Sbjct: 14 FLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGIRLLNRTTRSVTLTAAGEELQGLI 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S + + L +P+G++R+ D + LL L F+ YPDI++ L + N Sbjct: 74 SSPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFVDRYPDIEVDLTVTN 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +DI D D IR + + + QR + AP YLK P +L +H Sbjct: 134 RMVDIIGDGHDAGIRFGGTVPADMIAQRLSPDVAWAVVGAPDYLKRFGIPKHPSDLYQHR 193 Query: 191 L--ITFGDLIPKCMEDFNWLAT-------VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 I G+ ++W + +D P G I +V +++ G G+ Sbjct: 194 CLRIRLGN-----ARIYHWQFSKEGQQLEIDAP-GAVTIDETRVGVAMTMR-----GVGL 242 Query: 242 ALLPDYIVK---DNPNLVRIMEDVI--TPSFTVYFC 272 +P ++V+ +L R++ED P F +Y+ Sbjct: 243 MYVPAWVVERQIAEGSLHRVLEDWTHHEPGFHIYYS 278 >gi|294679149|ref|YP_003579759.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477965|gb|ADE87352.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB 1003] Length = 297 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 11/293 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VA SFT AA +L SQS++S + LE + ++L R R +++TE G +L Sbjct: 11 AFLAVAEERSFTRAAARLGTSQSAVSAVVRRLEERLDVRLLTRTTRSVSVTEAGQRLVDA 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +E L + +P G +R+ + + ++ + YP+++++++LD Sbjct: 71 LRPAFDGIEAELAALDDIRARPQGMIRLTASRHAAERIVMPVANRLMADYPEVRVEILLD 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +DI+ + D IRL + + + R + M +P Y P + Q+L H Sbjct: 131 QRFVDIAKEGFDAGIRLGESVDRDMIGVRISGDLQMVVAGSPAYFARHPAPQTPQDLTAH 190 Query: 190 NLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG-IALLPDY 247 N I +P + W D RP+ N + + G + L+ DY Sbjct: 191 NCINL--RLPTLGGLYAWEFEKDGRPLTVRVEGQFTTNDPELAVAAALEDRGLVCLMTDY 248 Query: 248 IVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + + LVR++ D P + YP + T AFR + + A W+ Sbjct: 249 LAPHLASGRLVRVLADWCPPFSGYHLYYPSRRQIT---PAFR--LLIDALRWR 296 >gi|262164996|ref|ZP_06032734.1| transcriptional regulator [Vibrio mimicus VM223] gi|262027376|gb|EEY46043.1| transcriptional regulator [Vibrio mimicus VM223] Length = 310 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA L L+ +++S I LE +V LF R R + LT +G Sbjct: 5 NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGEI 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T L+ ++ + + +G+L I+ DLG+NLL ++EF+ L+P++ ++ Sbjct: 65 FLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFIALHPNVTVK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ + D AIR KP S+ + + A+P YL L + Sbjct: 125 LELSDSLTDMYTNPVDIAIRYGKPADSNLVAMLLCDSNERVLCASPDYLATHPPILHPDD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241 L HN + F +I + + W+ + D GE +Q N + + + V G GI Sbjct: 185 LQHHNCLCF--MIADTLHN-KWILSRD---GETHSVVVQGNPTCNDSDVVHRLAVKGKGI 238 Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 A L D I +D + LVRI+ + + +Y + T ++AF+ +I K Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEYIRGKG 294 >gi|241766478|ref|ZP_04764347.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241363307|gb|EER58843.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 299 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 125/300 (41%), Gaps = 35/300 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VAR G + AAE LHL+QS++S+QI LET VG+ LF R + L LT G + Sbjct: 13 LRAFSTVARFGGVSRAAEALHLTQSAVSKQIKDLETWVGVPLFERTRKRLALTPAGERYE 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + V +LE +EL S G L +++ G L L +F L+P I + + Sbjct: 73 KAVQAVLLQLEAATLELITSD-DGGGALHLSSLPTFGAKWLIPRLPQFQRLHPQITLHFV 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D DC+I + + HA HYL L Sbjct: 132 PYVNGYDFEQPELDCSILFGEGHWPGA-----------HA----HYLTGNDVALIA---P 173 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP------------IGEPRISCLQVNSYLSIMQYC 235 + + + P + + L V P G ++ Q + + ++++ Sbjct: 174 RTRVADWPIHTPSDVAGYTLLRHVTVPAAWALWSETHGVTGLKLLAGPQFDQFQTMIRAV 233 Query: 236 VLGSGIALLPDYIVKD--NPNLVR--IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + G G+AL+P +V+D LVR + + +FCYPE L++FR ++ Sbjct: 234 MAGMGLALVPRCLVQDEITAGLVREPLPAGGYQSALGYWFCYPEGRNPLHPLQSFRQWLL 293 >gi|88800156|ref|ZP_01115725.1| putative transcriptional regulator [Reinekea sp. MED297] gi|88777137|gb|EAR08343.1| putative transcriptional regulator [Reinekea sp. MED297] Length = 305 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 1/191 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW + F V+AR+GS AA+ L +SQ ++SR + LE +G LF R RGLTLT G Sbjct: 5 DWQQWHFFTVIARTGSLNQAADALGVSQPTLSRHLQSLEARLGQNLFDRSTRGLTLTAFG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L ++ + + SG++R++ + Q L L F+ P + Sbjct: 65 ASLMEGCQQMEQTAQALERRASGQDQALSGRVRLSVNEMIAQYYLPNILPAFMDANPQLS 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ + N+ + AD A+R+ P Q LI R L I + YA+ YL P + Sbjct: 125 VEIEVTNRASSLDKRDADIAVRMFPPTQ-LDLIARHLYDIPLGFYASQGYLDRFGTPTTP 183 Query: 184 QELDKHNLITF 194 + L +H ++ + Sbjct: 184 EALLEHRIMGY 194 >gi|293392475|ref|ZP_06636795.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gi|291424877|gb|EFE98086.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 301 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 7/243 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +++F V SGS AA +L ++ S SR+++ LE E+G +L R R ++LT++G++ Sbjct: 6 VQLFLTVTESGSLAQAARRLGITPMSASRRLAALEQEMGKRLIQRTTRAISLTQEGAEFI 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E+ + +S SG LRI LG L L L P+++I L Sbjct: 66 PYARAIAEAEESAKALFLPNSKGASGLLRITAPSGLGNRTLLPLLPTLLANNPEMRIDLQ 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D A+R+ P++ SSLI RK+ A+P YL P SI +L Sbjct: 126 LSDEVVDIVGRGIDVAVRV-APLRDSSLIARKIADNPRILCASPDYLALHGSPRSINQLG 184 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H+ + + +P+ D + T G R SC V I C+ G G+A L + Sbjct: 185 QHHCLRLSN-VPQWSFDIDGQITGCSVDG--RFSCSNVE---GIRALCLQGVGLAQLSRW 238 Query: 248 IVK 250 VK Sbjct: 239 DVK 241 >gi|218509279|ref|ZP_03507157.1| probable transcriptional regulator protein, LysR family [Rhizobium etli Brasil 5] Length = 298 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 123/295 (41%), Gaps = 17/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A ++L ++Q+++S QI LE VG LF R R + LTE Sbjct: 7 FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---DGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ID + + D IR L L+ + +P ++ Sbjct: 124 AVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHWLMGLEFTPMLSPKLAESAGGIKE 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++L K +L GD+ K + + D RP Q+ S + G Sbjct: 183 PRDLLKFDLFDAGDVWWKQWFEAAGVTETDLDRRPRN-------QLGSQAVEADAAIAGH 235 Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A+L L R+ E + + YPE +N K+KAFRN+I Sbjct: 236 GVAILHPAFYTAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290 >gi|170701329|ref|ZP_02892293.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170133779|gb|EDT02143.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 290 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 21/290 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR SFT AAEQL L+Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 10 LQIFSTVARHRSFTRAAEQLCLTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V E + ++E ++L + L++ T + + + F +PD+ +Q+ Sbjct: 70 PVVDESFSRIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D S + D A+ + + + L + AP L+ ++ +L Sbjct: 125 TAWQHVVDFSTEPFDAAV-VYGTSPGAGVFALPLFDERLTPVCAPE-LRQVAPLDAVGDL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGIAL 243 +H L+ + +W A +D GE + + ++ ++ + G G+A+ Sbjct: 183 ARHTLLH------PTRDHRDWRAWLDH-AGERAVDAERGPTFDTLDLATNAAMQGFGVAI 235 Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +V D+ + L R + V+ +F YPE L + K++AF ++I Sbjct: 236 GDVTLVDDDVSARRLERPFDIVLETGARYFFVYPENLASQQKIRAFSDWI 285 >gi|78063595|ref|YP_373503.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971480|gb|ABB12859.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 318 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 1/183 (0%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A GSF A L ++ +++S+ ++GLE +G++L R R L LT++GS R Sbjct: 13 FVHAADGGSFAAAGRMLGITSAAVSKNVAGLEQALGVRLMNRTTRTLKLTDEGSVFLREA 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 L++ + + P G++RI+T+ G+ LQ L L YP + ++ D+ Sbjct: 73 RIALDALDSAVDSIVAQRLGPQGRVRISTSAAFGREHLQPVLPGLLARYPGLSVEADFDD 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ D D IR I S+L+ R + ++ A+P YL + P + +L H Sbjct: 133 RIVDVVRDGYDIVIRGGN-IHDSALVSRPIFRMNTVLVASPAYLASHGIPRAPDDLGAHR 191 Query: 191 LIT 193 LI Sbjct: 192 LIA 194 >gi|322509871|gb|ADX05325.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 300 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +R+ + +++ + +F YPDI+I+ Sbjct: 66 FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + ++ A+P YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVWKSRLYIVASPDYLALKGTPTQPEE 184 Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L++H+LI F + P + D + A S ++ +S ++ Q + G G Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IA L ++ I KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|193077075|gb|ABO11838.2| putative LysR-family transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 306 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 33/299 (11%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L++F + GSF+ AA+QL++ +++ S I LE + +L R R + + G Sbjct: 4 FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +++ +L+ + L+ +P G LR+ + ++ N+ +F LYPDI++ Sbjct: 64 AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R + + S+LI R LV + A+P YL P + Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPEQPE 182 Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230 +L H + F ++ +D+ +W+A D N LS Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDYFLKSWIAVNDAE-----------NYVLS 231 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +Q G+G+ +P Y V + N LV ++ + +P +V YP+ + + +++ F Sbjct: 232 ALQ----GAGLIQVPHYHVANELKNGRLVEVLSEWESPKMSVSALYPQHRQLSPRVRVF 286 >gi|170700819|ref|ZP_02891809.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170134267|gb|EDT02605.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 313 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AA++L ++ + SR ++ LET + +L R R + LT+ G + Sbjct: 7 MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + E ++ KPSG+L + T GQ + + + YP + ++L Sbjct: 67 DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L DI + D +++L + S L+ ++L +H A+P YLK P S+++L Sbjct: 127 LSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTPRSVRDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242 + H+ + + P D W +D P G E + QVN ++ G GI Sbjct: 187 EAHSCLQI--VTPIFPRD-RW--HLDGPDGRETFELPLPDFQVNIADALGAALRAGLGIG 241 Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + LVR++ + TVY Y K++ F +F+ Sbjct: 242 SLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292 >gi|165976329|ref|YP_001651922.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251233|ref|ZP_07337411.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253055|ref|ZP_07339206.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247898|ref|ZP_07529933.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252535|ref|ZP_07534431.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165876430|gb|ABY69478.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648087|gb|EFL78292.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649775|gb|EFL79953.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855589|gb|EFM87757.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860127|gb|EFM92144.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 294 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 93/191 (48%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR +FT AA +L +SQS++SR I LE+ +G++LF R R L+LT G Sbjct: 6 NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++L + + + KL+ L PSG++RI + +L L +F YP+IQ Sbjct: 66 NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI D DI + D +R + + R M +P Y P + Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185 Query: 184 QELDKHNLITF 194 +L H + + Sbjct: 186 SDLAHHQCLNY 196 >gi|163735608|ref|ZP_02143039.1| Transcriptional regulator [Roseobacter litoralis Och 149] gi|161391036|gb|EDQ15374.1| Transcriptional regulator [Roseobacter litoralis Och 149] Length = 292 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 40/290 (13%) Query: 6 DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR + A++ GSF AA +L LS S +S +S LE +G+ L YR R LTLT + Sbjct: 3 DRLRQMAIFAKTIDHGSFRGAARELRLSPSVVSHHVSQLEEILGVALIYRSTRKLTLTSE 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L T ++ +E ++L S+ PSG+LR+ L Q+ + F YP Sbjct: 63 GHRLLAATHKMLEAVEGELVDLSVSASAPSGELRVTIPSVLSQSNFTEQIAAFSRTYP-- 120 Query: 123 QIQLILDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+L LD D ++ D D AIR+ P ++ RKL ++ A+ YL Sbjct: 121 RIKLFLDFSDTRRALIDDGFDIAIRM-GPKAKNTATSRKLFSVERKLVASAEYLS----- 174 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV---DRPIGEPRISCLQ----------VNS 227 + G PK + ++WLA + P+ + +Q N Sbjct: 175 -----------LRPGPDDPKDLIGWDWLALTPAQNVPLEFGKSGGVQATIKPEAHIFAND 223 Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274 ++ + G+G+A++PD++ ++ ++ ++ D + V+ +P Sbjct: 224 AQALYRLARAGAGLAIVPDFLASEDVEAGSMSYVLPDWKLRAIDVFATWP 273 >gi|149201380|ref|ZP_01878355.1| transcriptional regulator, LysR family protein [Roseovarius sp. TM1035] gi|149145713|gb|EDM33739.1| transcriptional regulator, LysR family protein [Roseovarius sp. TM1035] Length = 293 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 16/299 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 3 NWDEVRTAYNVARIGTVSGAAEVLGVHHATVIRHIDALEERLGVKLFQRHARGYTPTEAG 62 Query: 64 SKLHRV---TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 L RV T + +++L +I+ Q + V SG+L + T++ +LL L F +YP Sbjct: 63 EDLLRVAQATDDQFNQL-AGRIKGQGNDV--SGEL-VVTSVGGLSHLLVPVLAAFQEMYP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 + ++ + ++ + A AIR P Q +++Q YA+ Y+ Sbjct: 119 ALVVRYLTGDRLFRLEYGEAHVAIRAGAVPDQPDNVVQ-PFFQQQFTLYASESYVARHGL 177 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++L H + D PK F WL D GE + + + + G Sbjct: 178 PKGPEDLPHHRFVGADD--PKTRAPFLRWLQ--DNVPGEAIV--FRSGDVHAQRNAILAG 231 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +GI + P L+++ + ++ L T K++AF N + +A W Sbjct: 232 AGIGFTSVLQAAEMPGLIQVTPPRPEWAAPLWLVTHMDLHRTTKVQAFLNHLKERAAAW 290 >gi|190890513|ref|YP_001977055.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] gi|190695792|gb|ACE89877.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 652] Length = 298 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 33/298 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V +GS + A L S + +S++I LE +G +L R R ++LTE G + Sbjct: 7 LEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + S + G L+++ G+ + +LK F+ +PD+ I L+ Sbjct: 67 DRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLAINLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ DI D AIR+ + + SSL+ R+L + A+P YL EP I +L Sbjct: 127 LTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRDIDDLK 185 Query: 188 KHNLITFGDLIPKCMEDFN---WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238 H +C+ N W T RP G L NS I + + G Sbjct: 186 HH----------RCLPAHNGDAWRLTGPEGALSLRPEG-----MLITNSSEVIREAVISG 230 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 GIAL + + + R+++ + P++ T+ YP K++ F +++ Sbjct: 231 LGIALRSTWDIGEELKAGRLLQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYL 286 >gi|170743839|ref|YP_001772494.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168198113|gb|ACA20060.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 299 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 8/267 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R V GS + AA L L+Q ++ RQI+ LE +G+ LF R GL TE G Sbjct: 6 WDHCRAALAVLEEGSLSGAARALGLTQPTVGRQIAALEAALGVVLFTRSPAGLLPTEAGL 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + + +G +RI + +G +L L +P + + Sbjct: 66 ALRPHAQALRAAAAALARTVTAAGEGVAGTVRITASEVVGGAVLPPILARLHEAHPALIL 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L ++ D+ AD A+R+ P Q +L+ RK+ T+ + +A YL P S+ Sbjct: 126 ELVLSDRVQDLLRRDADIAVRMTPPAQ-GALLARKVGTVRLGLHAHRRYLARRGAPASVA 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H+LI F D + D P+ R + + +S L+ + G GI + Sbjct: 185 ALAGHSLIGF-DAETAFLRDVR---IGGMPLDRSRFAW-RSDSALAQLAAVRAGFGIGVC 239 Query: 245 PDYIVKDNPNLVRIMEDVI--TPSFTV 269 + P+LV ++ ++ P+F V Sbjct: 240 QAGLAAREPDLVPVLPEIGWDLPTFVV 266 >gi|194365455|ref|YP_002028065.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348259|gb|ACF51382.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 305 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 117/260 (45%), Gaps = 20/260 (7%) Query: 3 FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 FD+ + VF V GSFT A L + S +SR ++ LE +G +L R R + LT+ Sbjct: 5 FDYLGDVEVFLAVVEHGSFTAGAVALSTTPSVLSRAVTRLEARLGRQLLQRTTRRVGLTD 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + L+ + ++ +G++R++ G L L F LYP Sbjct: 65 AGRLYLEQVRTAFGLLDDAERDVLAQDGALAGRVRLSVPTTYGHYRLPPVLARFAQLYPQ 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q++L + N+++D+ + D AIRL + + S L+ RKL + A P YL+ P Sbjct: 125 VQVELNITNRNVDLVAEGFDLAIRLGQ-LPDSGLVARKLEDAPLLLVATPDYLQRRGSPQ 183 Query: 182 SIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232 ++ +L +H + F G L P D +WL PR S + L ++ Sbjct: 184 TLDDLQQHLCLPFVMPRTGRLAPWIFRDDGRDVDWL---------PRSSIETSDDVLGVV 234 Query: 233 QYCVLGSGIALLPDYIVKDN 252 G GI ++IV++ Sbjct: 235 SLAEQGIGICQSYEFIVRER 254 >gi|121604246|ref|YP_981575.1| LysR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593215|gb|ABM36654.1| transcriptional regulator, LysR family [Polaromonas naphthalenivorans CJ2] Length = 300 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 16/293 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR + + GSF AA L +++S IS+ I+ LE + G LF R R + LT G+ Sbjct: 5 DALRALVLSKQCGSFAGAARALGVTRSQISKLIASLEADYGGALFARTTRSVALTSAGAT 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 LH E+ + + +G LR+ + GQ +L L FL L+P I+++ Sbjct: 65 LHSYALELLAIDAEAREAMAALQGMVAGPLRVNAPMSFGQLVLAPLLPGFLALHPQIELR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L+++ +D D +R+ + ++ SSL R+L + YAAP YL+ P S Q Sbjct: 125 VELNDRLLDPFEHGFDLTLRIAE-LEDSSLAARRLCGVPRAIYAAPGYLQAQGVPDSPQA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H + + + +G P S N+ +++ + G+G+ L Sbjct: 184 LKAHRCLNYAHTNTGHVWRLGRGGEKAHVAVGGPLCS----NNGEVLLEAAMAGAGLILQ 239 Query: 245 PDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + P L + E +P +Y YP + ++A +++ Sbjct: 240 PAFLAAGHLASGRLVPVLAQWQE---SPEIALYALYPATRRVPVAVRALIDYL 289 >gi|83951205|ref|ZP_00959938.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] gi|83839104|gb|EAP78400.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] Length = 293 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 16/300 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +WD++R Y VAR G+ + AAE+L + +++ R I LE +G+KLF RHARG T TE G Sbjct: 3 NWDEIRTAYHVARVGTVSGAAERLGVHHATVIRHIDALEERLGVKLFQRHARGYTATEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L RV + ++ SG L + T++ +LL L F YP++ Sbjct: 63 DDLLRVAQATDDQFSQLVGRIRGRGDGVSGDL-VVTSLGGLSHLLVPVLTRFREDYPEVV 121 Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ++ + A AIR P Q +++Q V + YA+ Y++ P Sbjct: 122 VRFLTGDRLFRLEYGEAHVAIRAGSVPDQPDNVVQ-PFVKQRVALYASRSYVERHGAPKD 180 Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + ++ H + D P F W+ R + + ++ + + G+GI Sbjct: 181 LADMANHFFVGADD--PNSRAPFMRWM----REHIPAENIVFRSGDFHALRRAIIEGAGI 234 Query: 242 ALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 + ++ ++V I+ +D +P + V L T K++AF + A++W+ Sbjct: 235 GFMFQLQARELDDMVEILPPQDDWTSPLWLVTHM---DLHRTTKVQAFLTVLKEAAKEWE 291 >gi|317053386|ref|YP_004119153.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gi|316953125|gb|ADU72597.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 299 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 25/261 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F AR S T AA +LH++ +ISRQI LE +G+KLF R R + LTE+G++ H Sbjct: 11 LRAFEAAARLSSMTLAAAELHVTHGAISRQIRKLEEHLGLKLFVRLTRQIILTEEGAQFH 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L T+ + P+ +RI+TT+ L L +F YPD IQL Sbjct: 71 HAVTRILGEL--TRESERLRRRSPARYIRISTTVSFATKWLAPRLSQFRQRYPDFDIQLD 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + ++D++ D AIR ++ +++ + +P Y D Sbjct: 129 VTDINVDLNDGQVDAAIRYGLG-HYRDVVSERILDETVTPVCSPGY------------RD 175 Query: 188 KHNLITFGDLIPKC--MEDF----NWLATVDRPIGEPRISCLQVNSY-LSIM--QYCVLG 238 HN +T + C + ++ NW A + GE C Q + L M + + G Sbjct: 176 THNGLTIIQELSGCVLLHEYRMLANWEAWFEMA-GEKNFRCHQGPLWTLGSMATEAAIRG 234 Query: 239 SGIALLPDYIVKDNPNLVRIM 259 G+AL +V D+ R++ Sbjct: 235 EGVALGRSVLVADDVAAGRLV 255 >gi|294675928|ref|YP_003576543.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294474748|gb|ADE84136.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB 1003] Length = 296 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 120/280 (42%), Gaps = 24/280 (8%) Query: 1 MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59 M F+ WD++R Y VAR G+ + AAE L + +++ R + LET +G KLF RH RG T Sbjct: 1 MRFENWDEIRTAYQVARMGTVSGAAEVLGVHHATVIRHVDALETRLGTKLFQRHPRGYTP 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 TE G +L V + + + + G+L I T++ L+ + E + + Sbjct: 61 TEAGQQLLAVGQATEDQFAQLAARIAGAGEEMRGEL-IITSLPALAALVMPAMAELMRAH 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 P + ++ I D + + A AIR +P + +++ +L YAAP Y++ Sbjct: 120 PALVLRYITDPRVFRLEYGEAHVAIRAGARPTEPDNVVS-QLGVNRTALYAAPEYIERHG 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMED----FNWLATVDRPIGE--PRISCLQVNSYLSIM 232 P +L H + P E F WLA G+ P N S Sbjct: 179 RPKGPNDLAGHRFVG-----PDSRESRAPFFRWLA------GQVPPEAMVFMANEMASQQ 227 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTV 269 G G+ LP + P LV + M D +P + V Sbjct: 228 AAIEAGLGLGFLPVLQGRAIPRLVEVVAPMTDWDSPFWLV 267 >gi|238796592|ref|ZP_04640099.1| Glycine cleavage system transcriptional activator [Yersinia mollaretii ATCC 43969] gi|238719570|gb|EEQ11379.1| Glycine cleavage system transcriptional activator [Yersinia mollaretii ATCC 43969] Length = 298 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AA++L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 2 NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 61 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 62 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 119 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + + L +L + AP L Sbjct: 120 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLL----------- 167 Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238 + +H L DL + +W+A R +G P+I+ Q + ++Q V G Sbjct: 168 MGEHGLKIPADLAYHTLLHDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 226 Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIAL+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 227 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 285 >gi|225686033|ref|YP_002734005.1| hypothetical protein BMEA_B0178 [Brucella melitensis ATCC 23457] gi|225642138|gb|ACO02051.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|326553651|gb|ADZ88290.1| transcriptional regulator [Brucella melitensis M5-90] Length = 306 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 8 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 68 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + A P YLK P +I++L Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTPQTIEDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ NS + + + G GIA + Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 240 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287 >gi|326387855|ref|ZP_08209461.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207901|gb|EGD58712.1| LysR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 310 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 137/311 (44%), Gaps = 46/311 (14%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA+ G FT AA + ++ +SR ++ LE +G++L R R ++LT+ G + + Sbjct: 9 FAAVAQHGGFTAAARATGIDKARLSRCVASLEENLGVRLLNRSTRSISLTDAGQRFYHGC 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 V + E +P+G +RI ++ L QN L L +L +P ++ +++++ Sbjct: 69 QAVLGSARAAMESIAELQKEPAGIVRIGCSVVLAQNYLAPILPHYLATHP--KVTVVVEH 126 Query: 131 KD-----IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM----------HAYAAPHYLK 175 D +D +D A + + + SSL+ R++ + H +A H Sbjct: 127 GDRWINPLDSDLDLA--LTTMVEALPGSSLVAREIGRVRRILVTGRTSAGHVFAPDHPDI 184 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLS 230 PL + D H+ + W T D R +PR L N Sbjct: 185 LAHLPLIARIEDMHD------------GEVRWALTTDDGRDARVAAQPR---LVTNDQNV 229 Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 + G+GIALLP+ +V D+ LV ++ + TP ++++ YP G L + R Sbjct: 230 QFEAAASGAGIALLPESVVASALDDGTLVHVLPEWSTPEYSLHLVYP---LPRGILPSVR 286 Query: 288 NFI-FLKARDW 297 +FI FL + W Sbjct: 287 SFIDFLASHLW 297 >gi|319778072|ref|YP_004134502.1| lysr substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171791|gb|ADV15328.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 301 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 18/296 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+ F AR GSFT AA++L ++Q ++S Q+ LE E+G++LF R + L++T G Sbjct: 9 NALKAFEAAARHGSFTRAADELSVTQGAVSHQVKALELELGVRLFDRERQKLSITRAGLS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V + + ++ +Q S +G L ++T+ D L L F +PDI ++ Sbjct: 69 YLEVVRDAFDRIALGTQRIQHLS--RAGALTVSTSPDFASKWLVNRLGRFAETHPDIDLR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +D + + D A+R + + R L + + A +P + REP + Sbjct: 127 VSATMHHVDFAREDVDLAVRHGDGNWAGHDVVR-LCSEQLFAVCSPKLHQRMREP---SD 182 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243 + K L+ D +D++ WL + + R+S V N ++ V G G+AL Sbjct: 183 VLKFPLLHLDD-----RKDWSEWLEAAG--VRDARLSHGPVLNRASMVIDAAVDGQGVAL 235 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + N LVR + S T + P+A K+ FR ++ +A D Sbjct: 236 ARTTLAAWDLINGRLVRPFATALRLSKTYWIVCPQATSMVPKIVTFREWLLAEAAD 291 >gi|217972392|ref|YP_002357143.1| LysR family transcriptional regulator [Shewanella baltica OS223] gi|217497527|gb|ACK45720.1| transcriptional regulator, LysR family [Shewanella baltica OS223] Length = 314 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 28/290 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +VF + GS AA L +S+S ++R +S +E G +L +R R L+LT G + Sbjct: 5 EAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTPAGEQ 64 Query: 66 L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + HR+ +L + +SV P G LRI+ + L +L ++++L YP Sbjct: 65 VLDYCHRLL-----ELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVRQYLASYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + + ++ +D+ + D AIR+ + +LI R+L AAP YL Sbjct: 120 QASVNIHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VN 226 + ++L +HN +T FGD++ + + P +P+++ Q N Sbjct: 179 VHPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQAQAPNSDPKLNQGQAFNVPVNGNFSAN 238 Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 + ++ + G GIA+ P + K D+ LV ++ + + S VY Y Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVY 288 >gi|152996028|ref|YP_001340863.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150836952|gb|ABR70928.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 315 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 143/287 (49%), Gaps = 24/287 (8%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D++ + FY+ A G +T A +++S +SR+++ LE +GI+L +R++R +LT+ Sbjct: 1 MDFNDIYYFYLTAEHGGYTAAERVSGITKSLLSRRVAQLEERLGIQLIHRNSRQFSLTDA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L+ + + ++ + PSG +R++ + L Q+ L EF+ +P + Sbjct: 61 GVQLYEGAINMVAEGQSAYESVALLQSVPSGVVRVSCPVLLAQHHFTFFLPEFMKSFPQV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + L + ++++ I + D +R R + Q + ++ +KL T M A+P ++K P Sbjct: 121 SVHLDVTDREVQILEERVDIVLRTRGDLAQEAGIVSKKLATSKMILVASPDFIKEYGMPT 180 Query: 182 SIQELDKHNLITFGDLIPKCMED---FNW-LATVDRPI----GEPRISCLQVNSYLSIMQ 233 +L K + T ++ K +D + W L D + PR+ CL N +L ++ Sbjct: 181 HPSQLTK--MPTLTEMAGK--QDGTLYQWELLGPDGAVCSVPHHPRLVCL--NRWLQ-LK 233 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEAL 277 V G G+ L+P+ + D+ NL+ ++ PS+T +A+ Sbjct: 234 SAVQGVGVGLIPEIVASDDLAKGNLLHVL-----PSWTTNVSIVQAV 275 >gi|325920459|ref|ZP_08182386.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] gi|325549039|gb|EGD19966.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] Length = 302 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F ARS +FT AAE L +S+S++ + I+ LE + ++LF+R R + LT G Sbjct: 8 NGLVTFVTAARSRTFTEAAESLGISRSAVGKAIARLEARLRVRLFHRTTRRIALTADGES 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + + L S P+G+LR+ G++++ L +PD+ Sbjct: 68 YFATCAAALEEIASAEAGLASQSSLPTGRLRVDMPSSFGRHVMLPILLRIGAAHPDLHYT 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID + + D IR S L+ RKL + A+P YL P +I E Sbjct: 128 LSFNDHLIDPAQEGIDLTIRFGGVESSGGLVARKLGRQRLVLCASPAYLAAHGTPRTINE 187 Query: 186 LDKH-----------------NLITFGDLIPKCMEDFN 206 L H + +T GD +P+ N Sbjct: 188 LQAHRSIVGFRNGQPVGWRFGDKVTAGDFVPQGTHQLN 225 >gi|251788572|ref|YP_003003293.1| LysR family transcriptional regulator [Dickeya zeae Ech1591] gi|247537193|gb|ACT05814.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591] Length = 306 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 7/295 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D++ + +F V RSGSF AA L + +++SR+I LE ++ +L R R LTLT Sbjct: 2 LDFNDVALFVQVVRSGSFAEAARSLGMPPNTVSRRIQQLEEQLDTRLLQRSTRKLTLTSV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + L EL +++PSG +R+A D + +FL +YP Sbjct: 62 GQTFYDRCAGAVDGLTDAGQELLTGNLEPSGLIRVAAAADFFDFFSVEWVADFLAMYPRT 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181 + +L + D+ D D AIR + + S I R+L+ A+P Y+ P Sbjct: 122 RFDFVLSDARADLIGDRVDVAIRAGR-LDDSGYISRQLLRAGYDGLVASPAYIAKHGMPN 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 ++Q+L K + ++FG + V+ I S N+ ++ + + G GI Sbjct: 181 TLQDLAKLDCVSFGHPSGFTTWRLAGASGVEEDI--QMSSRFSGNTIQALRKATLAGLGI 238 Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 ALLP I + LV ++ + ++ YP + AF F+ K Sbjct: 239 ALLPTVITTRDLHAGRLVPVLPQYKRQGYGLHVLYPSRRHLPLAVSAFIAFLVEK 293 >gi|170700785|ref|ZP_02891777.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|170134312|gb|EDT02648.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 301 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 97/194 (50%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ D + F V SGSF AAE+L +++S++ + I+ LE +G +L R R +LT Sbjct: 1 MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G + +LE + +L + GKLR++ + G + + + + YP Sbjct: 61 DDGQAYYDRCVRALSELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I + + ++ +D+ + D A+R+ S+SL R+L T + AAP YL P Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180 Query: 181 LSIQELDKHNLITF 194 S+ +L H I + Sbjct: 181 QSLDDLRNHRTIAY 194 >gi|168819846|ref|ZP_02831846.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343352|gb|EDZ30116.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087553|emb|CBY97317.1| probable RuBisCO transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 301 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 138/292 (47%), Gaps = 10/292 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ F ++A GS++ AA + +S+S +SR++S LE ++G+ L R R L LT+ Sbjct: 2 IDWNDYWYFALIAEEGSYSRAAIRAQVSKSVLSRRMSALEEQLGVHLIQRTTRRLALTKV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + ++ E + +Q P G LRI+ + + + L + EF+ +P Sbjct: 62 GEQFAQECQTLVNQSERARAVVQAVQEYPQGTLRISAPVFMAETWLGALINEFIARWPLA 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QL+ N+ +D+ + D A+ + + SSL +K+ T++ A+P +++ + Sbjct: 122 NVQLLAVNRPVDMIAEGIDIALSVSSGALPDSSLHYKKINTLYDILVASPQWVEQHPDLK 181 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +I +L H L M+ ++ L + I L N+ ++Q G+G+ Sbjct: 182 TIGDL--HRAPAMVRLADGRMQSWH-LINGSQEITLSLSPRLYSNNLRVLLQAVAGGNGV 238 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ALLP K+ N LV++ + +Y +P N G R F+ Sbjct: 239 ALLPFPACKEELQNGGLVQLFPEWSGQPRQIYALFP---ANKGMPAVARYFM 287 >gi|308049730|ref|YP_003913296.1| LysR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307631920|gb|ADN76222.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM 9799] Length = 303 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 21/289 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V SF+ AA + L S++SRQ++ LE+ G +L R R ++LT +G Sbjct: 7 IRTFVNVVAHQSFSAAAREQGLVTSAVSRQVAELESHYGCQLLTRSTRTMSLTAEGEYFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L+ ++ + K SG +RI + + Q LQ +L F+ YP++ + + Sbjct: 67 AEFKAILARLDQLELGAGDRRNKVSGLIRITSPLHSAQLSLQPSLSRFMAKYPEVSLSWL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ +++ + D AIR+ + + SSL+ R+ T+ + A+P YL P + L Sbjct: 127 LANRSVNLLEEGVDLAIRVGE-LPDSSLVARRFTTVAVVFVASPDYLARHGTPDHPRALV 185 Query: 188 KHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240 +H +C+ D + W + R+ + ++VN Q+ G G Sbjct: 186 QH----------RCLVDNSNPQLARWRYQEGGREHQIRVPATVEVNEGDLAGQFAADGHG 235 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 IA LP ++V+ LV I++ V YP N+ ++A Sbjct: 236 IAQLPQFMVQQYLAEGRLVPILQAYALTPQPVSLVYPANRTNSVAVQAL 284 >gi|307245822|ref|ZP_07527908.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254795|ref|ZP_07536622.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259236|ref|ZP_07540966.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853524|gb|EFM85743.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862321|gb|EFM94288.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866903|gb|EFM98761.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 294 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 93/191 (48%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR +FT AA +L +SQS++SR I LE+ +G++LF R R L+LT G Sbjct: 6 NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++L + + + KL+ L PSG++RI + +L L +F YP+IQ Sbjct: 66 NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI D DI + D +R + + R M +P Y P + Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185 Query: 184 QELDKHNLITF 194 +L H + + Sbjct: 186 SDLAHHQCLNY 196 >gi|163851170|ref|YP_001639213.1| carbonate dehydratase [Methylobacterium extorquens PA1] gi|163662775|gb|ABY30142.1| Carbonate dehydratase [Methylobacterium extorquens PA1] Length = 310 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 12/287 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R+F A +GSF+ A L LS S IS +I LE +G L R R + LTE G Sbjct: 5 ESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEAGRV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +E + ++ P G L++ + LG+ ++ + F +P+ + Sbjct: 65 FYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEADVH 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ + D A+RL + ++ SS RK+ I A+P YL P S + Sbjct: 125 LRLSDHLLDLVQEAVDVAVRLAQ-MRDSSFTLRKVADIERILCASPGYLAEHSAPESPAD 183 Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 L H L+ F E F W L D + P + + + ++ + G GI Sbjct: 184 LIDHACLLLRF-----PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGIV 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 L P + V + LV ++ T+ YP + K F Sbjct: 239 LKPVFEVAPYLADGRLVPVLPGTPPTPVTLGVVYPSRKMLPARAKTF 285 >gi|149920868|ref|ZP_01909330.1| transcriptional regulatory protein [Plesiocystis pacifica SIR-1] gi|149818267|gb|EDM77720.1| transcriptional regulatory protein [Plesiocystis pacifica SIR-1] Length = 290 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 13/248 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +F ++A +GSF AA QL +++S++ R++ LE+E+G++L R R L LTE G Sbjct: 3 DDRAIFAILAEAGSFAGAARQLGVARSTVMRRLDALESELGLRLVQRAGRRLVLTEAGRG 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V +LE + EL+ PSGKLR+ I L + F+ +P + + Sbjct: 63 YAEALRGVLRELERVENELRSEEATPSGKLRVWLPILGTSAALAPAVASFMDAHPAVVVH 122 Query: 126 LILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 L L + + D A+ R+ + + +L++ +++ + AY H L P Sbjct: 123 LELGRDVRHLELGAFDLALQFGFRINTELAARTLMRDRMILVASSAYVRAHGL-----PR 177 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 S++ L H + D+ K +W + P S ++VNS Q G+G+ Sbjct: 178 SVEALRHHRAVHARDVEGK---RIHWRDPSGARVPMPPAS-VEVNSVGFAFQLARAGAGV 233 Query: 242 ALLPDYIV 249 P + Sbjct: 234 VWAPSLLA 241 >gi|116251032|ref|YP_766870.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255680|emb|CAK06761.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 304 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 8/257 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF + GS + A+ +L +S + + + ++ LE +G +L R R +LT+ G Sbjct: 7 MQVFVTTVQEGSMSAASVKLGISPAMVGQHVAALEERLGTRLLNRTTRRQSLTDFGMSYV 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ T + + S KP G LRI G +L L + L PD+ + + Sbjct: 67 EQCRDILERVAITDQDAEASQTKPRGLLRITAPTTFGAEVLMPALHRYRKLAPDVTLDIT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++++DI + D AIR+ + + S LI R L M A+P YL+ P EL Sbjct: 127 LTDRNVDIVEEGFDIAIRIGE-LPDSRLIARHLAPYRMMICASPDYLERHGNPGHPSELS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I F P + D P+ + + VNS ++ G G+ + P Sbjct: 186 GHETIGF---TPAARSPWKLSKGKDEVEVVPK-TAITVNSGQAVRMAARAGLGVIMQPSI 241 Query: 248 IVKDNPN---LVRIMED 261 ++ + LVR+ D Sbjct: 242 LLTSDTQAGLLVRLFPD 258 >gi|325275279|ref|ZP_08141235.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099587|gb|EGB97477.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 302 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 135/287 (47%), Gaps = 7/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V+ SFT AAE L L +S++S Q+ LE +G +LF R R + T+ G+ L+ Sbjct: 7 LRTFVRVSEVNSFTLAAESLGLPRSTVSEQVRALERLLGTQLFNRTTRRVQATQDGALLY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + + +G+LR+ + + ++ L FL +P +Q++L Sbjct: 67 TRSKDLLSGMDEIESLFSADDAELAGRLRVDLPTMMARRVIIPALPRFLQRFPRLQVELS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + DC +R+ + ++ R + + M A+P YL P ++Q+L Sbjct: 127 CTDRQVDLLREGFDCVMRI-GALHDLDVVARPVGQLSMRNCASPAYLARHGVPRTLQDLA 185 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H L+ + +L +C F ++ +P + VN+ + C+ G G+ +P Sbjct: 186 GHQLVHYVRNLGGRC-AGFEYVQGGQVQY-QPMAGAVTVNNAEAYSAACLAGLGLIQVPA 243 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V ++ LV ++ P+ V Y +++AF ++ Sbjct: 244 VGVAEHLQRGELVALLPAWQAPAMPVSLLYARQRHVPRRVQAFMQWL 290 >gi|307546886|ref|YP_003899365.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581] gi|307218910|emb|CBV44180.1| transcriptional regulator, LysR family [Halomonas elongata DSM 2581] Length = 305 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 128/288 (44%), Gaps = 12/288 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA GS+T AAE L LS++ +SR + LE + +L R R L LTE G + Sbjct: 5 DAMTAFVRVAELGSYTRAAEALALSRTRVSRLVMELEEHLQARLLQRTTRRLHLTEVGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + LE + E+ G LR+ + G L + F++ +P++Q++ Sbjct: 65 YLAHAQGILQALEDARAEVGADVHAMHGHLRLNGPMSFGIRHLSPLVASFMVQHPELQVR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L+++ +D+ + D AIR+ + S+L+ R+L M A+P YL P +E Sbjct: 125 LDLNDRRVDLLEEGYDLAIRIGD-LPDSTLVARRLTHCRMVLCASPEYLATHGAPRRPEE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + H + + + D+ L I P L+ N+ + G GIA P Sbjct: 184 IAGHRCLRY---LGAYSGDWQ-LGGQQHDISGP----LESNNGDVLTPAAEAGLGIAHQP 235 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++V D+ LV I D V+ YP K+ F +F+ Sbjct: 236 SFLVADSIRAGRLVPIGTDWPPQILGVHGIYPARRHLPTKVARFLDFL 283 >gi|116695836|ref|YP_841412.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113530335|emb|CAJ96682.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 334 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 26/305 (8%) Query: 6 DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DK RV F V R+GSF AA + ++ + S+ + LE +G++L +R R L+LTE+ Sbjct: 27 DKARVLTLFLGVVRAGSFHRAAVEAGVTPQAASKAVRTLEDHLGVRLLHRTTRKLSLTEE 86 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G++L + + +L+ +++ S G +R+ LG +L ++ F YP I Sbjct: 87 GARLFELAAPGMRQLDEALEQVRSSKSDNDGLIRLTAPPSLGSRVLVPLVRGFREQYPRI 146 Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++L + D+ D R+ P Q +L+ R+L + + AAP YL EP Sbjct: 147 TFDVVLSDLFTDLVEAKIDVGFRVGTSPGQ--NLVARRLCDLPLVICAAPDYLARHGEPA 204 Query: 182 SIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYC 235 ++ +L +H F G ++P W VD + + + N + ++ Sbjct: 205 TLDDLLQHQCTGFRRPATGRMVP-------WELQVDGDLIYQEVPAVASFNDVETEVEAV 257 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290 G GI LP Y++ + +LV I P ++ +Y YP + +++ F +F+ Sbjct: 258 RAGMGIGQLPAYMI--HADLVSGRLKAILPGYSSSNVGMYMYYPHRSQMPVRVRRFIDFV 315 Query: 291 FLKAR 295 R Sbjct: 316 VEAGR 320 >gi|326410358|gb|ADZ67422.1| transcriptional regulator [Brucella melitensis M28] Length = 305 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 7 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 67 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + A P YLK P +I++L Sbjct: 127 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTPQTIEDLQ 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ NS + + + G GIA + Sbjct: 186 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 239 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 240 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 286 >gi|190150237|ref|YP_001968762.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263576|ref|ZP_07545191.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915368|gb|ACE61620.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871219|gb|EFN02948.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 294 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 93/191 (48%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR +FT AA +L +SQS++SR I LE+ +G++LF R R L+LT G Sbjct: 6 NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++L + + + KL+ L PSG++RI + +L L +F YP+IQ Sbjct: 66 NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI D DI + D +R + + R M +P Y P + Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185 Query: 184 QELDKHNLITF 194 +L H + + Sbjct: 186 SDLAHHQCLNY 196 >gi|307256964|ref|ZP_07538741.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864539|gb|EFM96445.1| LysR substrate binding domain protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 294 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 93/191 (48%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 +++ L F VAR +FT AA +L +SQS++SR I LE+ +G++LF R R L+LT G Sbjct: 6 NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++L + + + KL+ L PSG++RI + +L L +F YP+IQ Sbjct: 66 NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++LI D DI + D +R + + R M +P Y P + Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPKTP 185 Query: 184 QELDKHNLITF 194 +L H + + Sbjct: 186 SDLAHHQCLNY 196 >gi|270264868|ref|ZP_06193132.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041166|gb|EFA14266.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 302 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 10/285 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68 VF + GS AAE L +S++ ++R ++ +E G +L +R R L+LT+ G + L R Sbjct: 9 VFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLER 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + E +E E S + G LRI + LGQ L G + ++L +P + + L + Sbjct: 69 CRQMLALAGEIDLVE-GEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQM 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +N+ +++ + D A+R+ + +LI R L + A+P YL P Q+L Sbjct: 128 NNRAVNLVEERIDLALRITNELD-PNLIARPLSSCASVVCASPAYLAAHGTPRHPQDLAL 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 HN +T+ K + F+ V + L N + +M V G+GI++ P Y Sbjct: 187 HNCLTY-SYFGKSLWHFDSQG-VKSAVAVS--GNLSANESVVLMAGTVQGAGISMQPYYS 242 Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ +M D S +Y Y + L+ +F+ Sbjct: 243 AAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFL 287 >gi|170742631|ref|YP_001771286.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196905|gb|ACA18852.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 304 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 12/286 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF VA GSF A L LSQ+ +++ ++ LE +G +L +R R LTLTE G Sbjct: 8 MQVFVRVAGLGSFAAAGRSLGLSQTGVTKHVTALEERLGTRLLHRSTRRLTLTEAGRGYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + +++P+G LR+ + G + L F +P +Q+ L Sbjct: 68 EACERILAEITEAEAAARAEALEPTGTLRLNVPLSFGVREIAPALAAFTAAHPALQVDLG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D A+R+ ++ S+L+ R L + AAP YL P ++L Sbjct: 128 LSDRAVDLIEEGWDMAVRIGH-LRDSALVSRFLAPCRLLLCAAPDYLAARGRPRRPEDLG 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +HN + + L F A L+ ++ +++ V G G+ P + Sbjct: 187 RHNCLGY-TLASSGGWRFGGRAYAV-------TGNLRASNGDALVAAAVAGQGLIYQPSF 238 Query: 248 IVKDNPNLVRIME-DVITPS--FTVYFCYPEALKNTGKLKAFRNFI 290 IV D R++ D+ P ++ P + K++A F+ Sbjct: 239 IVGDALRAGRLVALDLGAPPSVLPIHALMPPGRRQPAKVRACVAFL 284 >gi|312881192|ref|ZP_07740990.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309371084|gb|EFP98538.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 289 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 15/261 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + F VA + F+ AA +L ++ S ISR++S LE ++G+ L R R + LTE G Sbjct: 4 FDGIPEFLAVAETQGFSSAARRLGVATSQISRRVSDLEAKLGVALVARTTRKVKLTEAGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ ++L+ K +G LR+ D + + L EF+ + ++++ Sbjct: 64 TYYEYCHDIVNQLDQANEIATAGQGKLNGTLRVTAAGDFTETHIVPALIEFVAQHSELEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ D + ID + D AIR + S+LI RKL A A+P YL+ P + Q Sbjct: 124 EINHDTRMIDFVEENYDFAIRF-GTLPDSNLIARKLSDHPYAAAASPEYLEKFGIPQTPQ 182 Query: 185 ELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL KH IT +N W + I ++ NS +++ C G GI Sbjct: 183 ELTKHQCIT---------TTYNRWTFQHNNEDINVSVKGKVKANSIKTLISACKSGLGIL 233 Query: 243 LLPDYIVKDN---PNLVRIME 260 LP + +N LV I+E Sbjct: 234 YLPQSTLAENFEAGQLVPILE 254 >gi|149188029|ref|ZP_01866324.1| Hypothetical transcription regulator [Vibrio shilonii AK1] gi|148838017|gb|EDL54959.1| Hypothetical transcription regulator [Vibrio shilonii AK1] Length = 304 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 12/299 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 DK+ F V R+GSF+ AA+Q +S S+ SR I+ LE VGI L R R + T+ G + Sbjct: 5 DKIVYFLHVVRTGSFSLAAKQYGISASAGSRWIAELEESVGISLLKRSTRKVVPTQAGLR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ S+V ++E E+Q S G +RIA+T ++ L + E+L +P + + Sbjct: 65 LYERFSQVNTEIEDIFTEIQNLSNDDRGVIRIASTPLFARDYLGKIVGEYLRYHPHVTFR 124 Query: 126 LILDNKDID--ISMDYADCAIRLRKPIQS--SSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ D+D +D+A A + Q S L++R L+ + +P Y++ EP+ Sbjct: 125 VMETAFDMDHVNEVDFAVRASAIYDGFQEKDSLLVKRSLLKHPLIVCCSPAYIEKYGEPM 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240 + ++L++HN + L+ W+ D + I+ ++V I + G G Sbjct: 185 TPEDLNRHNCLYASTLVGGN----KWVFERDGEMTAVDIAQTVEVEDSQFIKTVAINGGG 240 Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 I LP ++++ LV I+++ F Y + + F+ ++ + R+ Sbjct: 241 IGYLPLSLIEEELEQGVLVPILKEYTNSDFEFSLYYRPRRQMPVRCVNFKEYLIRRVRE 299 >gi|187479723|ref|YP_787748.1| LysR family transcriptional regulator [Bordetella avium 197N] gi|115424310|emb|CAJ50863.1| LysR-family transcriptional regulator [Bordetella avium 197N] Length = 312 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF VA SF+ AAE L L+ ++++ + LE +G+ L +R R L LTEQG K Sbjct: 7 MTVFVRVAECSSFSRAAESLDLANATVTACVRNLELSLGVTLIHRDTRRLHLTEQGEKYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ ++ +IE++ + G L + T I G L L F L +P I + Sbjct: 67 ERAREILRAVDDAEIEVRSQLGELRGPLVVETPISFGHAFLCPALHGFALRHPGISTMVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186 L N+ ++ D AIR+ + ++ + LI R + A P E P + Sbjct: 127 LTNQPHNLIEKAIDVAIRMDR-VEDAGLIARPIYEARYVVCATPEVAAGLPEHPADLNPQ 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244 D G L + WL T + +PR L NS +++ + G+G+ + Sbjct: 186 D-----CLGVLAEERRTSNPWLLTREEETVAVQPR-GTLHFNSNDAVVNAALHGAGVIHV 239 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D V + LV + + IT T Y A ++ K++AF +F+ Sbjct: 240 LDIFVLRAIEQGTLVPVYTNWITQCRTFYSVTTRARNDSAKVRAFTDFL 288 >gi|327191153|gb|EGE58197.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 33/298 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V +GS + A L S + +S++I LE +G +L R R ++LTE G + Sbjct: 7 LEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + S + G L+++ G+ + +LK F+ +PD+ I L+ Sbjct: 67 DRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLAINLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ DI D AIR+ + + SSL+ R+L + A+P YL EP +I +L Sbjct: 127 LTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRNIDDLK 185 Query: 188 KHNLITFGDLIPKCMEDFN---WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238 H +C+ N W T RP G L NS I + + G Sbjct: 186 HH----------RCLPAHNGDTWRLTGPEGALSLRPEG-----MLITNSSEVIREAVISG 230 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 GIAL + + + R+++ + P++ T+ YP K++ F +++ Sbjct: 231 LGIALRSTWDIGEELKAGRLVQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYL 286 >gi|186474178|ref|YP_001861520.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196510|gb|ACC74474.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 304 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 131/296 (44%), Gaps = 12/296 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V +GS + AA ++ L S +S++++ LE VG++L R R TLTE+G+ H Sbjct: 12 LLAFSRVVSAGSLSAAAREMDLPLSVVSKRLAHLEKSVGVRLIQRTTRRQTLTEEGALFH 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E + L + + SG LR+ LG+ + + +F L+P + +QL Sbjct: 72 ARVVRILDEIEQAEELLSQRRQEVSGLLRVTAPGQLGRQKIAPLIADFQRLHPQLTVQLD 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ D AIR + SSLI R L A+P YLK P +L Sbjct: 132 LTDAVVDLVEGGLDLAIRF-GSLADSSLIARALAPNFRVLCASPAYLKQHGTPKHPHDLT 190 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H I GD W D + + + N + + + +GIA+ + Sbjct: 191 THRCILIGD-----QRRGEWRFEGDESVAVRVDAAIVTNDGEAAHLFALADAGIAVKSIW 245 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297 V D+ L R++ + ++ YP + +++ F +++ L+A W Sbjct: 246 DVGDDILAGKLRRVLPQHSMSAAPLHAIYPHSQHLAPRVRVFVDYLRERLLQAWRW 301 >gi|78063840|ref|YP_373748.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971725|gb|ABB13104.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 331 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 9/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L V +A SGSF AA +L +Q ++SR I LE + KL +R +R + +T+ G L Sbjct: 12 LLVLAAIAESGSFGRAASRLGKTQPAVSRAIQRLEDRLRAKLVHRTSRHVEVTDAGHALL 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + +G LR+A + +L L +F+ +P + ++L Sbjct: 72 SKVLPLLQGIEEATAGASHQTSIVNGTLRVACDAVFARLVLAPELAQFMKDHPALHVKLE 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 N D+ D D AIR P S+LI R+L + + A+P YL+ P S Q+L Sbjct: 132 TRNDLPDLISDGFDLAIRFGPPT-VSTLICRRLYSPRVLTVASPSYLEQRGRPRSPQDLV 190 Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 D H I D P F+W D + ++ L V + + C+ G GIA + Sbjct: 191 DDGHECILAID--PATGRPFDWEFWRDSEKVKVAVNGKLMVTDAGTKIGACLAGYGIAQI 248 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D + + L ++ D +F +Y YP K++AF +F+ Sbjct: 249 IDLGIDTHLRAGTLEPVLTDWCDETFPLYVYYPSRNHVPAKVRAFIDFV 297 >gi|37526532|ref|NP_929876.1| hypothetical protein plu2641 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785963|emb|CAE15015.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 295 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF A + SFT A +QL +S S++S+ I LE +GI+LF+R R +TLT +G+ Sbjct: 7 LNVFVRAADARSFTVAGQQLGISSSAVSKAIVRLEERLGIRLFHRSTRTVTLTLEGTLFF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E + EL + PSGKL+I+ +G L F LYP+I++ + Sbjct: 67 ERCKRILDEVEAAETELSQMQKMPSGKLKISLP-SVGM-LFMPKFAAFTRLYPEIKLDIS 124 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ +D+ + D +R P + S L+ R L + +P Y P ++L Sbjct: 125 CSDRIVDVIEEGFDAVLRTGDP-RDSRLMSRMLGSYRQVIVGSPAYFAAAGFPEEPEDLV 183 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIALLP 245 H + + P + W D E + C V L Q C G GIA +P Sbjct: 184 SHPCLLY--RFPTNGKLNVWPLNRDGKKIELNLPCNMVTDSLE-PQVCFAEHGLGIACVP 240 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V +LV I++ S +P + + K++ F +F+ Sbjct: 241 NIAVYRQLKEGSLVTILDKYNESSTIFRILWPSSRHLSPKVRVFVDFM 288 >gi|329916431|ref|ZP_08276380.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gi|327544724|gb|EGF30148.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 308 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 131/280 (46%), Gaps = 16/280 (5%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS + AA + +QS++S+ I+ LE +G++L R L T QG + V + Sbjct: 17 GSMSAAARERGTTQSTVSKAITALEKRLGVRLLARSTTVLVPTTQGQLFYERAKRVLEEF 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 + + E + + +P+GKLR+ LGQ + ++ FL YP+++++L L+++ +D+ Sbjct: 77 DEAEAEARGMTERPAGKLRLNVPSALGQFYVADLVRTFLRTYPEVEVELTLNDRMVDLLE 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----CREPLSIQELDKHNLIT 193 + D A+RL + + + R + T + AAP YL+ E L+ Q+ + + Sbjct: 137 EGVDVALRLGGKLPPDA-VARYVGTSVRYLVAAPAYLQGRAIVTPEDLATQDYIRFAWLD 195 Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD-- 251 GD++ + L R + VN+ L I + G G+ L P ++ D Sbjct: 196 GGDMV-ELSNGVQKLTVATR-------ARFAVNNALLIRDALLAGDGVGLCPSWLASDSL 247 Query: 252 -NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LVR++ + PS + P + + F +F+ Sbjct: 248 ASGKLVRVLPEWSGPSQQLTLLTPSRRYQPLRARLFIDFM 287 >gi|170694876|ref|ZP_02886026.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170140236|gb|EDT08414.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 324 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 100/185 (54%), Gaps = 1/185 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++VF V SF+ AA+ L L +S++S + LE + ++L R R L+LT +G+ Sbjct: 4 FQSMQVFARVVELNSFSRAADALRLPRSTVSVVVRKLEAHLRVRLMQRTTRHLSLTPEGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +R + ++ ++ L + P G+L + LG+ ++ + +F +PD+++ Sbjct: 64 EYYRHCIRILAEIRESEEMLASARNGPRGRLSVQIATALGRIVVLPAIDDFHKRFPDLEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + LD++ I S + DC IR+ +P + +IQR+L + + +P YL EP ++ Sbjct: 124 MIGLDDRPIHPSDENLDCTIRMGEP-EDPGVIQRRLCDLEIVTAGSPDYLVRYGEPQRVE 182 Query: 185 ELDKH 189 ++ +H Sbjct: 183 DIPQH 187 >gi|153009501|ref|YP_001370716.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561389|gb|ABS14887.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC 49188] Length = 304 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 24/297 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SF+ AAE+L L+Q ++SRQI+ LE ++G LF R +R + L++ G Sbjct: 15 LAAFDAVARHESFSAAAEELSLTQGAVSRQIATLEEQLGTALFDRTSRNVVLSDAGRVYL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + LQ S L +A G L + F+ YPDI + Sbjct: 75 KAVGPALASIRAA--SLQVMSHMRGTTLNLAFLPTFGTRWLIPRIPRFVAKYPDIILNFA 132 Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPL 181 D + D AI + +P S L+ + + +P +L+ P Sbjct: 133 TRIGQFDFDREGLDAAIHIGQPDWPNADSVFLMDETVAPV-----CSPAFLQQNPVHVPA 187 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + L N+ + P + +W ++D I P ++ + ++ Q C+ G G+ Sbjct: 188 DLLPLPLFNMAS----RPGAWD--HWFKSLD--IAAPVSPGMRFEQFSNVSQACIAGLGV 239 Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 AL+P ++++ D+ LV + + YF P+A +T + AFR+++ + + Sbjct: 240 ALMPLFLIRAEIDSGQLVVACPHTVKSPSSYYFVTPKARSSTPAVSAFRDWLLAEVK 296 >gi|167644458|ref|YP_001682121.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167346888|gb|ABZ69623.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 311 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 4/204 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ L +F + +G FT A L +S S++S +I +E +G++L R R + TE G Sbjct: 6 WNDLAIFAAIVEAGGFTRAGLGLGVSASALSHRIRAMEARMGVRLLNRTTRSVAPTEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L ++E I L +P+G++R+ +++ L YP++ + Sbjct: 66 RLLASLRPAMAEVEAALITLDADRARPTGRVRVTAHRSAAFDIVLPRLGGLADAYPEVTV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183 +L++D+ +DI D IR R P ++ +L + + A+P YL++ P + Sbjct: 126 ELVVDDGLVDIVRRGFDAGIR-RLPSLEQDMVSVRLDDGVPLAIVASPEYLRSFGVPDTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW 207 Q+L +H + + +P + W Sbjct: 185 QDLQRHRCLNY--RLPTAGSLYRW 206 >gi|323175477|gb|EFZ61072.1| hypothetical protein ECOK1180_5761 [Escherichia coli 1180] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 24/292 (8%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F+ VAR+ SF A ++L LS S+IS I LE + I+LF R R ++LTE GS L+ Sbjct: 6 TFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNLYER 65 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + +++ E+ + + P+G L+I + L L F YPDI+++L D Sbjct: 66 LRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYPDIKVELTTD 125 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNCREPLSI 183 + +DI D +RL S ++++ ++++ + A P Y +P Sbjct: 126 DSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYFARYGKPRHP 179 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H + F P + F+W + I + ++ + ++ ++G+GI Sbjct: 180 HDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEAVLMGAGIGY 234 Query: 244 LPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290 L +K D L ++ D T P F +Y YP + L+AF +++ Sbjct: 235 LLYEQIKEYLDTGRLECVLGDWSTERPGFQIY--YPNRQYMSCGLRAFLDYV 284 >gi|254477949|ref|ZP_05091334.1| transcriptional regulator, LysR family [Ruegeria sp. R11] gi|214028534|gb|EEB69370.1| transcriptional regulator, LysR family [Ruegeria sp. R11] Length = 281 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 27/247 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 R F AR+ SFT AAE++ L+QS++S+Q+ LE +G+ LF R RGL LT+ G KL Sbjct: 11 FRSFEAAARTLSFTAAAEEIGLTQSAVSQQVKSLEMRLGVDLFVRRTRGLALTDAGRKL- 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 EV LE + +G L +AT++ + Q ++ NL F P+I++++ Sbjct: 70 --LPEVGSALEMLSGAAARFDIGAAGDLLTVATSVSIAQWVIAPNLAAFKTQNPEIRLRI 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSI 183 + D AD IR Q + QR L+ H+ A +P+ +C PL Sbjct: 128 LSAIWPDDFHASRADVQIRFGSEKQVGAGSQR-LLPDHLIAVKSPNLETDFGSC--PLIE 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 + T+G+ + P+ EP + ++Y +Q V G+G+AL Sbjct: 185 TVGTSNGWATWGE--------------ANGPVQEPTVFA---DTYGMALQLAVHGNGVAL 227 Query: 244 LPDYIVK 250 + + + K Sbjct: 228 VSELVAK 234 >gi|152969742|ref|YP_001334851.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954591|gb|ABR76621.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 260 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 115/233 (49%), Gaps = 12/233 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F WD R+F +AR+G+ + AA+++++ +++SR++ LE + + LF RH G LT+ Sbjct: 5 FHWDDARIFLAIARAGTLSGAADKMNMGIATVSRRLDRLEQALNVPLFSRHQSGYRLTDD 64 Query: 63 GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L R + Y L + + V +G +R+AT+ +L + + +LK L YP+ Sbjct: 65 GEALLARAEALEYAGLAFGEAAQLQGHV--AGVVRLATSDNLATHFILPSLKGLLDHYPE 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++++++ + +++ AD AIR+ KP ++ L ++L T+ Y A L + L Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP-EAGHLTLKRLGTVGFGVYGAADCLAGA-DGL 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 S+ E D + + L C A P R+ + S+ QY Sbjct: 181 SLSEAD---FVGWRKLTSTCRPPNGSRA----PCAAGRVKSKPIRSWPRFPQY 226 >gi|238787282|ref|ZP_04631081.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia frederiksenii ATCC 33641] gi|238724544|gb|EEQ16185.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia frederiksenii ATCC 33641] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 130/286 (45%), Gaps = 12/286 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68 VF + GS AA+ L +S++ ++R ++ +E G +L +R R L+LT G + L R Sbjct: 9 VFVAIVERGSMIAAADALEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLER 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + +E QE + G LRI+ + LGQ+ L + +L YP + + L + Sbjct: 69 CRRMLEFAQDMDLVEGQEDG-ELRGLLRISCSQSLGQSALAIAVAGYLHRYPQVAVDLQM 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +N+ +++ + D A+R+ + +LI R L T H AAP YL P +L Sbjct: 128 NNRTVNLVEERIDLALRITNDLD-PNLIARPLATCHSVVCAAPSYLSAKGTPKDPHDLAV 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +T+ K + F+ +G L N + ++ + G+GI L P Y Sbjct: 187 HNCLTY-SYFGKSLWHFDQQGVKSSVAVG----GNLSANESVVLLSGALEGAGITLQPSY 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LV+++ D S +Y Y + L+ +++ Sbjct: 242 SAAPYIASGQLVKLLPDYQPQSMGIYGIYTSRRQMPATLRTMLDYL 287 >gi|206563628|ref|YP_002234391.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198039668|emb|CAR55637.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 290 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 23/291 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR SFT AAEQL ++Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 10 LQIFSTVARHRSFTRAAEQLCITQGAVSRQIQTLEAHYGFPLFRRHAKGLTLTAEGEQLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V E + ++E ++L + L++ T + + + F +PD+ +Q+ Sbjct: 70 PVVDESFARIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + +D S + D AI + ++ L + AP L+ ++ +L Sbjct: 125 TTWQHVVDFSSEPFDAAI-VYGTSPGPGVVALPLFDERLTPVCAPE-LRQASPLGAVGDL 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYCVLGS 239 H L+ + +W A +D P P L + + ++ + V Sbjct: 183 AHHTLLH------PTRDHRDWRAWLDHAGERGVDPARGPTFDTLDLATNAAMQGFGVAIG 236 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + L+ D + L R + V+ +F YPE L + K++AF ++I Sbjct: 237 DVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPENLGSQQKIRAFSDWI 285 >gi|241518559|ref|YP_002979187.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862972|gb|ACS60636.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 315 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 139/301 (46%), Gaps = 22/301 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M+ DWD +R F VAR GS AA QL ++ ++I R+I+ LET + +LF + G LT Sbjct: 1 MTIDWDDVRYFLAVARHGSVRAAAAQLDVNHTTILRRIAQLETRLHSQLFEKLPAGYRLT 60 Query: 61 EQGSKLHRVTS--EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 E G ++ + E L +++ ++ +V+ G LR+ L +LL + +F Sbjct: 61 EAGEQVQELAEQMEASSNLLVSRVSGRDQAVR--GPLRVTMAPTLATHLLMPDFADFGRQ 118 Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +P+I++++ ++ +++ AD A+R+ + R + ++H P Sbjct: 119 HPEIEMEIHSSLENANLTNREADVALRV--------VFNRNSLPQNLHGVKGPDLSVGVY 170 Query: 179 EPLSIQELDKHNLITFGDL--IPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQY 234 +S L T GD+ I K +E A D G P L+ ++L M+ Sbjct: 171 --MSRDLLAAWKAGTSGDIRWISKNIEGVPEWAHGDVIEVTGAP-FRVLEDAAHLEAMR- 226 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 LG GI+ LP ++ P VR+ + P T++ + T +++ F FI + Sbjct: 227 --LGLGISALPSFVGDAEPLFVRVPGTRLGPHGTLWVLTQGEARKTKRVRLFTEFISERL 284 Query: 295 R 295 R Sbjct: 285 R 285 >gi|83716781|ref|YP_439353.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|167615896|ref|ZP_02384531.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] gi|257142473|ref|ZP_05590735.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650606|gb|ABC34670.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 300 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 135/290 (46%), Gaps = 9/290 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +++VF +A SF+ A++ L + +++++ + +E +G +L R R + LT+ G Sbjct: 4 FQEMQVFVRIAERQSFSRASDDLQIPRATVTNLMKRMEARLGTRLLERTTRTVRLTQDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +R + LE + ++++ P G LR+ L + + L +FL YP I++ Sbjct: 64 AYYRRCVRLIADLEEAEGAFRDAA--PKGLLRVNLQGTLARYYVVPALPDFLARYPGIRL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ +D+ + DC +R +Q SS++ R++ + A+P YL EP + Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPADLA 180 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243 L H + + + + TVD + E R+ + + V V G GI Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P Y + D + L ++ P V YP++ + + +++ F ++ Sbjct: 239 VPRYRIADELAHGCLKIVLAAYPPPPMPVSVLYPQSRQLSSRVRVFARWL 288 >gi|118764440|emb|CAL80819.1| LysR-type regulator [[Polyangium] brachysporum] Length = 337 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 127/289 (43%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V G+ T AAE L LS +++SR ++GLE ++G++L R R + LT G Sbjct: 7 MHVFTKVVDLGALTKAAESLGLSSAAVSRTVAGLEAQLGVRLLQRTTRSVALTPAGGVYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ + +P GKLR+ + L L F+ YPD+ I ++ Sbjct: 67 ERARRILREVDAADATVAALVAEPKGKLRVLAPSSFVVHQLARQLPVFVARYPDVSIDVV 126 Query: 128 LDNKDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + D++ Y D +I++ I ++ R L +H AAP YL+ C Sbjct: 127 AGDCDLEADSAY-DVSIQVAGVGGSILRDDVVARPLAQVHCLPCAAPGYLERCGPVEHPT 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L + + + F + F A V EPR + L+ + S+ + GIA L Sbjct: 186 DLLQRDCLVFATSGMPPVWRFEGAADVVEI--EPR-AALRSDHGESLYAAALAELGIATL 242 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++V D +LVR++ T+Y P +AF F+ Sbjct: 243 PTFMVHDALQRNSLVRVLPQWRIAPQTIYAVLPTYRYIPASTRAFVQFL 291 >gi|330892117|gb|EGH24778.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 306 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F+++A+ GS A +L ++ +IS+++S LE +G +L R R ++LT +G Sbjct: 7 LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGELYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ + + SS P G +R+ ++ G+ + L F YP++QIQL Sbjct: 67 SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D IR + ++ RK+ + A+P YL+ P + EL Sbjct: 127 ISDHPLDLATHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN I + P + F+ + C N + + + G GI L + Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242 Query: 247 YIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + R ++ED VY YP+ L + +++ +F+ Sbjct: 243 WDIARSVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFL 289 >gi|312960758|ref|ZP_07775263.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gi|311284416|gb|EFQ62992.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 319 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 132/292 (45%), Gaps = 13/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F V R +FT AA++LH++QS++S Q+ LE G++LF R R L LT G+ L Sbjct: 28 LRAFEVATRHPTFTAAAQELHVTQSAVSHQLRHLEALWGLQLFER-GRALRLTAAGATLA 86 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E + LE T +L+E K +L ++TT L L +P++ + L Sbjct: 87 PIVREFFMSLEATLGDLREQ--KGRVRLSVSTTYSFALKWLLPRLPSLSRQHPELLVSLD 144 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + I S AD AIRL K L L + A+P L+ P S EL Sbjct: 145 TTDAVIHFSDAQADVAIRLGKG-NYPGLYSEFLFGEQVFPVASPELLQRVGTPGSPTELL 203 Query: 188 KHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + L+ +L PK F + P+ E ++ ++ +LG G+AL+ Sbjct: 204 RLPLLIRDGAELAPKWEVWFEAVGLAFSPLRE----SVRFGDTNMTVEAALLGQGVALVR 259 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 V++ + LVR+ + YF P+ +++ + FR ++ +A Sbjct: 260 SGHVENEISDGRLVRLFDVQFQSPLAYYFVCPKGIESQPHIARFRRWLVGEA 311 >gi|188592136|ref|YP_001796734.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG 19424] gi|170938510|emb|CAP63497.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 295 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 120/274 (43%), Gaps = 7/274 (2%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + + L F VAR GSFT AA L ++QS++S+ + GLE + I+L R R ++ T G Sbjct: 5 NLNDLLAFVTVAREGSFTRAAASLGVTQSALSQAVRGLEERLRIRLLTRTTRSVSPTAAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + ++E L KP+G +RI ++ +L L L YPDI+ Sbjct: 65 ERLMQAIGHRFDEIEAELDALTALRDKPAGTVRITCGDNVLHTILLPRLTPLLQEYPDIK 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ ++ DI D D +RL I + + M A+P Y P + Sbjct: 125 LEFDVNYGFRDIVADRFDAGVRLGNTIDKDMIAVPIGPPLRMAVVASPAYFAAHPPPKTP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 ++L H I +P + W R + L N+ + + G GI Sbjct: 185 KDLMAHRCIN--QRMPTSGGLYVWDFERRGRQVNVRVDGPLIFNTTQPQVDAALAGLGIT 242 Query: 243 LLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCY 273 LLP D ++ + LVR++ED P F Y Y Sbjct: 243 LLPEDELMPHIEAGRLVRVLED-WCPKFNGYHLY 275 >gi|89902383|ref|YP_524854.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347120|gb|ABD71323.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 291 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 14/289 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KLHR 68 VF V +GSF+ AA QL L+ S++SRQ++ LE + ++L R R L LTE GS R Sbjct: 3 VFARVVDAGSFSGAARQLGLTPSAVSRQVARLEGVLRVRLLERTTRKLRLTEAGSAAFTR 62 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + V E + +S+ P G +R++ G+ ++ + FL YP++ +QLI+ Sbjct: 63 CQALVAAAREVMALSDSQSAT-PRGLVRVSMPKAFGRQVVHPLMPAFLARYPEVDVQLII 121 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 ++ +D+ + D AIR+ + L R L +I A+ YL P ++L + Sbjct: 122 TDRTVDLFEESIDLAIRITD-VPPPGLAGRPLTSIRHLVCASSQYLAAHGTPAHPRDLVQ 180 Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDY 247 H+ + G+ D +W R+S V ++ + + GIA LP++ Sbjct: 181 HSCLYLGE----DERDRHWRFQRGAEEATVRVSGRYVANHSEVRLDGARQHLGIASLPEF 236 Query: 248 IVKD---NPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ +LV +++D + T + YP KL+ + +F+ Sbjct: 237 TAREALAKADLVTVLDDWEHKTDYAGTAWLLYPPNRFLAVKLRVWIDFL 285 >gi|78065829|ref|YP_368598.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77966574|gb|ABB07954.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 324 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 133/302 (44%), Gaps = 17/302 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L VF A SF A+ +L ++ S+IS I LE +G++LF R R ++LT+ G Sbjct: 11 DLFSLNVFLAAATHLSFRAASIELDVTPSAISHSIKSLEQRLGVRLFNRTTRSVSLTDAG 70 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + + PSG +RI + + +L+ L FL YP + Sbjct: 71 ERLVDKLRPAISSVAEAMLAVDGMRDTPSGTVRINASEGAIRLVLKPVLARFLRDYPQVH 130 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + ++ D + DI D IRL + + + R + A A+P Y P Sbjct: 131 LDIVTDGRLGDIVAGGFDAGIRLAEAVPQDMIAVRVSDPVRFAAVASPAYFAAHGRPDVP 190 Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 Q+L++H I F G + E + TV+ + P L + ++ + G Sbjct: 191 QDLERHACIRFRFDSGAIYRWEFERRGVVETVN--VSGP----LTLTDQPLMVDAAIDGI 244 Query: 240 GIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIA +PD++V D + L R++ D + P +Y YP +G L+A + + + + Sbjct: 245 GIAFVPDHLVHDALADGRLERVLADWCPVMPGLCLY--YPGHRHVSGGLRALIDRVRIPS 302 Query: 295 RD 296 D Sbjct: 303 PD 304 >gi|54303261|ref|YP_133254.1| LysR family transcriptional regulator [Photobacterium profundum SS9] gi|46916691|emb|CAG23454.1| hypothetical transcription regulator LysR family [Photobacterium profundum SS9] Length = 314 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 14/176 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F AR GSFT AAE LH++ +IS+QIS LE E+ LF RH+RG+ LT++G++L+ Sbjct: 5 LATFETAARFGSFTQAAEHLHITTGAISQQISHLEQELSFVLFERHSRGIHLTDEGNQLY 64 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126 RV ++ + ++Q++ G++ + T L L +F YPDI+I Sbjct: 65 RVVNQSLADIRDVINQIQKAH-HADGEIHLKLTPSFAFKWLVPRLHDFYTQYPDIKIHTF 123 Query: 127 ----ILDNKD--IDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175 ++D+ D D+++DY I+ R Q S L+ KL+ + +P Y+K Sbjct: 124 AEGALVDHNDTNFDLAIDYGQTPYIQTRNKSQISLLMAEKLLPV-----MSPDYMK 174 >gi|209551865|ref|YP_002283782.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537621|gb|ACI57556.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/311 (25%), Positives = 134/311 (43%), Gaps = 30/311 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF VA + +F A E+L +++S++S+ + LE +G+ L R R ++LT Sbjct: 1 MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119 E G ++ ++E +PSG LRI T + ++ L G L F+ Sbjct: 61 EAGEVFFEAVGPSVRRVRDAMQTVREMQARPSGLLRI-TVSSIAESFLSGTLLAGFMQAC 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM------HAYAAPHY 173 P+I++ + + + + DI D +RL +I++ +V I + +A A+P Y Sbjct: 120 PEIKLDITITDDEFDIVEAGFDAGVRL------GEVIEQDMVAISVSERQRQYAVASPAY 173 Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYL 229 L+ P EL H I + D P + W T DR + N Sbjct: 174 LERRGRPRHPGELQGHACIGWRPRPDTAP-----YRWEFTENDRDFDVSVDPAVTTNDMG 228 Query: 230 SIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +++ G+GI Y+ + LV ++ED P Y YP + KL+ Sbjct: 229 MMIRMACAGAGITFGMVETFQSYV--ERGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLR 286 Query: 285 AFRNFIFLKAR 295 A + I AR Sbjct: 287 ALVDHIRTSAR 297 >gi|168820867|ref|ZP_02832867.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342398|gb|EDZ29162.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 307 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++A + SFT AA QLH+S S++S+ + LE E+G+KL R R + LTE G Sbjct: 9 LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++S P G LR+ LLQ NL F+ YPDI++ + Sbjct: 69 ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR +Q + + A+P YL PL QEL Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + + ++ R P + L VN + G+G+ + + Sbjct: 189 NHRCLCHRFTRESGLYRWEFVRGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 V + + L ++E+ + + Y YP KL+ F ++ KA Sbjct: 248 DVHEDLQDGQLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297 >gi|17545871|ref|NP_519273.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428166|emb|CAD14854.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 297 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 24/284 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V +GS T AAEQL + S +SR + LE ++ L R R L LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G+ + ++ + + +P+G+LR+ + +++ + +F YP Sbjct: 61 DEGTAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++L ++ ID+ + D AIR+ ++ S+L R+L T + A+P YLK P Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GALRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-----RIS-CLQVNSYLSIMQY 234 ++ L H L+ F + P+ + +W P+ P RI+ L+ +S ++ Q Sbjct: 180 RTVDALRHHALLGF--VQPESLN--HW------PLRGPHGDRLRITPTLKASSGETLRQL 229 Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMEDVIT----PSFTVYF 271 + G+GI L D++ + +LV+++ + P VY+ Sbjct: 230 ALQGAGIVCLADFMTARDRRAGDLVQVLPEATVEIQQPIHAVYY 273 >gi|213969852|ref|ZP_03397986.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|213925400|gb|EEB58961.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 302 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 22/293 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 +FDW+ LR F A S + AA++ + +++SR+I+ LE + +KL R R LT+ Sbjct: 23 TFDWEDLRYFLTFAAVKSLSGAAKKSGVEHATVSRRIASLEKSLNVKLVDRRKRLYELTD 82 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G KL + + + E + P+ ++ I+ + L L F ++P Sbjct: 83 DGRKLAVIGRRIEEQAEAIGRLAVAAQDAPATEVTISAPSSVAIEKLVPQLGAFRAMHPG 142 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ D++ +S +D IR +P++ + ++ R++ T Y + YL+ Sbjct: 143 IVLRLLGDHQYSSLSSCQSDLCIRFSRPVE-NGIVARRIGTASFSFYCSSFYLE------ 195 Query: 182 SIQELDKH-NLITFGDLIPKCMEDFNWLATVD-RP-IGEPRISCLQVNSYLSIMQYCVLG 238 Q L H I + + ++ A V RP + E + LQ+ + + G Sbjct: 196 --QRLAVHYEFIGYDSEVMTASQNAELKAIVGARPFVLEAKTVELQIRAAEA-------G 246 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLPD+ V+ NP L R+ ++ P V+ E L++ ++A N++ Sbjct: 247 VGIALLPDFAVEQNPRLCRL--ELSRPLEVDVWLGVHEDLRSVASIQAAMNYV 297 >gi|170695597|ref|ZP_02886741.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170139584|gb|EDT07768.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 320 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 137/291 (47%), Gaps = 22/291 (7%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F ++A+ S + AA L LS + ++++ +E +G++L R R ++LT +G R Sbjct: 14 FILLAKLRSLSGAARALDLSPPAATKRLGVIEQRLGVRLVNRTTRSVSLTPEGETYLRYA 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S++ ++ + + + P G LRI T+ G+ + + EF +P +++Q + + Sbjct: 74 SQIVGQVREMEEAISGAKRDPQGLLRINATLGFGRTTIAPLVSEFAKRFPAVEVQFEVTD 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ D AIR + + S L R++++ A+P YL+ P + +L +H Sbjct: 134 RPVDLVEGAFDMAIRFGE-LPDSRLSARRIMSNRRFLCASPKYLEKYGTPERVDDLAEHR 192 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIAL- 243 I I + +D V R I I ++V LS ++++ + G GI + Sbjct: 193 CI-----IHRQNDD---AYGVWRYIVNDHIEAIKVKGALSSNDGDIVLRWALDGHGILIR 244 Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L Y+ NLV + + + PS ++ YP T + +AF +F+ Sbjct: 245 SEWDLAKYVQSGRLNLV--LPNTVLPSADLFVYYPRQKNQTVRARAFIDFL 293 >gi|254248947|ref|ZP_04942267.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124875448|gb|EAY65438.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 350 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 1/185 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + SFT AA+ L +S+++ +R + LE +G+ L R R L T +G + Sbjct: 24 MRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEGDAYY 83 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + ++ +++ PSG LR+ + ++ L EF +PD+++ L Sbjct: 84 RRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHPDLELTLA 143 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D D DC+IRL + SSL+ R+L ++ A+P YL P + +L Sbjct: 144 VAGRAGDRIGDAIDCSIRL-GALPDSSLVARRLGSLERVTCASPAYLDRFGVPRTPDDLG 202 Query: 188 KHNLI 192 H + Sbjct: 203 AHRAV 207 >gi|54293278|ref|YP_125693.1| hypothetical protein lpl0326 [Legionella pneumophila str. Lens] gi|53753110|emb|CAH14557.1| hypothetical protein lpl0326 [Legionella pneumophila str. Lens] Length = 287 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 14/290 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D++ F V F AA + +S +++SRQI+ LE E+ +L R R L+LT+ G+ Sbjct: 4 FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + +L +I + S + G L + ++ L L EF+ L P +QI Sbjct: 64 RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123 Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + D++ + D + + P + L+++++ T A+P YL P S Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGPPE---LVRKRVSTTRYVLCASPDYLAKNGIPES 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL KH IT P + F ++ EP L +N ++ + +LG GI Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFK---DNEQIYVEP---VLWLNDSRALCECALLGMGII 234 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L +YIV + + L+ ++ + S +VY Y + K++ F +F Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284 >gi|323519879|gb|ADX94260.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] Length = 300 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 145/300 (48%), Gaps = 20/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +R+ + +++ + +F YPDI+I+ Sbjct: 66 FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + ++ A+P YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184 Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L++H+LI F + P + D + A S ++ +S ++ Q + G G Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IA L ++ I KD L+ + ED I + ++ Y + +++ F F+ + +D Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQNIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|265999210|ref|ZP_05465375.2| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|263092670|gb|EEZ16886.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] Length = 325 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 27 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 86 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 87 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + A P YLK P +I++L Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTPQTIEDLQ 205 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ NS + + + G GIA + Sbjct: 206 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306 >gi|188532592|ref|YP_001906389.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188027634|emb|CAO95484.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 300 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 136/283 (48%), Gaps = 21/283 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++LR + V SGS T AA+QL+ + S ISR + LE+++ L +R R + L+ Sbjct: 1 MKITLEELRAWVTVVDSGSITAAADQLNQTTSGISRALGRLESKLQTTLLHRTTRRIALS 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G + ++ +E + ++ PSG+LR+ + + + EF +P Sbjct: 61 EEGQIFLQHARQIIRSVEAAEEQIARRREIPSGRLRVNAATPFMLHAIVPLIPEFSRRFP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 IQ++L D ID+ D AIR+ + ++ S+L R L + + A+P YL EP Sbjct: 121 LIQLELTSDEVVIDLLEQQTDIAIRIGE-LRDSTLHARALGSSRLRLMASPDYLAEYGEP 179 Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFN----WLATVDRPIGEPRISCLQVNSYLSIMQYC 235 ++ E L H L+ F +L E N W + + +P IS +S ++ Q Sbjct: 180 HNVAELLANHRLLGFCNL-----EQHNIWPLWHSEKELLHIKPTISA---SSGETLRQLA 231 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYF 271 V G GI + D++ + + LV ++E ++ P VY+ Sbjct: 232 VNGMGIVRISDFLSRADLASGRLVPVLESQTHEMRHPIHAVYY 274 >gi|167032448|ref|YP_001667679.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gi|166858936|gb|ABY97343.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 317 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 16/254 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F V +GSF+ AA + L+ S+++R+I LE+ VG +LF R + T G+ Sbjct: 8 DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +L + E S P G +RI G+ L + +FL+ YP + +Q Sbjct: 68 FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127 Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L L + +D+ + D +R P+ + L+ L + A A+P YL + P Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237 EL H+ + + L P F W +V G+ R+ + N+ +++ + Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFSV---AGQTRLYRPARMRMAANNAETLLFGALA 239 Query: 238 GSGIALLPDYIVKD 251 G GIA LP +++ + Sbjct: 240 GLGIAHLPTWLISE 253 >gi|89899887|ref|YP_522358.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344624|gb|ABD68827.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 320 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 10/251 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +LR F VAR +F AA+ L L+QS++SRQI LE EVG+ LF RH R + LT G++L Sbjct: 17 QLRAFEAVARHLNFRAAADDLSLTQSAVSRQIQALEDEVGVGLFLRHTRAVELTSAGAQL 76 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R S ++++ ++ S+ + S + I+T L L+ F +PDI I+ Sbjct: 77 LRAVSPSLERMDSAVRLIRRSAGRKS--VAISTWASFASMWLIPRLEAFQSEHPDIDIR- 133 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQR-KLVTIHMHAYAAPHYLKNCREPLSIQE 185 +D D+ + +D D + LR + SS +L + A+P LK+ ++ Sbjct: 134 -IDATDVSVDLDTTDIDLALRYTLPSSVPSNAVRLFGEQLTPVASPWLLKSGHPLKRGED 192 Query: 186 LDKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 L LI D L + + WL D EP+ L N I+Q + G G+ Sbjct: 193 LAHFALIEASDANRTLHLEWLTWRRWLDEHDFKKLEPK-RWLYFNYAHQIVQAALTGQGV 251 Query: 242 ALLPDYIVKDN 252 AL V D+ Sbjct: 252 ALARTPQVADS 262 >gi|238792768|ref|ZP_04636399.1| Glycine cleavage system transcriptional activator [Yersinia intermedia ATCC 29909] gi|238727876|gb|EEQ19399.1| Glycine cleavage system transcriptional activator [Yersinia intermedia ATCC 29909] Length = 305 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 131/299 (43%), Gaps = 25/299 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AA++L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + + L +L + AP L Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPTILTG--------- 176 Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238 +H L DL + +W+A R +G P+I+ Q + ++Q V G Sbjct: 177 --EHGLKVPADLANHTLLHDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 233 Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 GIAL+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 234 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gi|332532582|ref|ZP_08408459.1| putative transcriptional regulator, LysR family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038003|gb|EGI74451.1| putative transcriptional regulator, LysR family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 295 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 117/257 (45%), Gaps = 13/257 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L F V GSF+ AA L + +SR +S LE + L R R L LTE+G Sbjct: 8 EDLETFITVVDCGSFSGAANLLDQQVAKVSRAVSRLENTLQCTLLNRTTRRLELTEEGHT 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E + L T + ++ PSGKLRI + L + EF YP I + Sbjct: 68 FIKYAREGLNTLYTGEEAIKLLKHAPSGKLRIDAASPFVLHQLTPLIGEFAKQYPHITLD 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + ID+ D AIR+ ++ S+L RKL + + A+P Y+KN I + Sbjct: 128 ITSHDSIIDLLEHKTDLAIRI-GDLKDSNLHARKLGSSQLRIVASPEYIKNNATITQIDD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGIAL 243 L H +I F D PK W P+ P + L +S ++ Q C+ G+AL Sbjct: 187 LQNHKIIGFSD-SPKLN---TW------PLVRPALFTFSLSASSGETVRQLCIANQGVAL 236 Query: 244 LPDYIVKDNPNLVRIME 260 L +++ ++ +++E Sbjct: 237 LSHFMIGNDLKTGKLVE 253 >gi|299068455|emb|CBJ39678.1| putative transcriptional regulator, LysR family [Ralstonia solanacearum CMR15] Length = 289 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 17/248 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 WD +R F +AR GS + AA +L + ++++R+ LE +G++LF R RG LT + Sbjct: 1 MQWDDVRHFLALAREGSLSAAARRLGVEHTTVARRADALEQALGVRLFDRLPRGWRLTAE 60 Query: 63 GSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L + + + +I S++ G +R++ L +++ NL +P Sbjct: 61 GGALAEQAGRMEQEAASLARIAAGAGSLR--GTVRVSAPPTLASHVIAPNLAALRRRWPG 118 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + L+ + ++ ++ AD A+RL +P S++L R L + YA P L Sbjct: 119 IDLVLLGEKRNANLMAHEADLAVRLSRPT-SAALATRPLGDLGYGLYATPEVLARPEA-- 175 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + I + D + + M WLA G R+ L+ + ++ + + G G+ Sbjct: 176 ------EWEFIGYDDTL-RHMPQQRWLAAY---AGARRM-VLRCSDLAAVHRAALTGLGV 224 Query: 242 ALLPDYIV 249 A LP ++V Sbjct: 225 AALPHFLV 232 >gi|218516764|ref|ZP_03513604.1| probable transcriptional regulator protein, LysR family [Rhizobium etli 8C-3] Length = 297 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 33/298 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V +GS + A L S + +S++I LE +G +L R R ++LTE G + Sbjct: 6 LEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + S + G L+++ G+ + +LK F+ +PD+ I L+ Sbjct: 66 DRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLAINLV 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ DI D AIR+ + + SSL+ R+L + A+P YL EP I +L Sbjct: 126 LTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRDIDDLK 184 Query: 188 KHNLITFGDLIPKCMEDFN---WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238 H +C+ N W T RP G L NS I + + G Sbjct: 185 HH----------RCLPAHNGDAWRLTGPEGALSLRPEG-----MLITNSSEVIREAVISG 229 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 GIAL + + + R+++ + P++ T+ YP K++ F +++ Sbjct: 230 LGIALRSTWDIGEELKAGRLVQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYL 285 >gi|206559558|ref|YP_002230319.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035596|emb|CAR51482.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 301 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 20/297 (6%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F + +SG + A LH S +SR+++ LE +G++L R +R LT++G L+ Sbjct: 9 LFRAIVQSGGISAGAFALHSSPPVVSRRLAALERRLGVRLAQRSSRRFKLTDEGLLLYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ + E+ G LRI D G++ + L +F + + QL+ Sbjct: 69 CCSILDQIRDAEAEVASRGGAARGLLRIGAPADFGRHHIAPLLADFTSRHSGLYTQLLPS 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +++ +D D +R P +I RKLV+ AAP YL P+ EL H Sbjct: 129 DAGLEVGVDPCDVILRFGLP-NDLGVIARKLVSTASVLCAAPAYLAKHGAPMQPAELGDH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIAL 243 N + ++ + L V E ++V+ LS ++Q+ + G GI+ Sbjct: 188 NCLR--------LQGRHRLNDVWHFDNEGTRQDVRVDGTLSSTSGEVLLQWALAGEGISQ 239 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295 + V + N LVR++ + P+ +Y Y +++ F ++I L+AR Sbjct: 240 EAYWDVAEHIANGRLVRVLPEYTCPALDLYAIYASGSPIPPRIRLFVDYIDHVLRAR 296 >gi|157372495|ref|YP_001480484.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157324259|gb|ABV43356.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 22/283 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F V SGS T AAEQL + S ISR +S LE ++ L R R L LT Sbjct: 1 MKITLEELLAFTTVVDSGSITAAAEQLGQTTSGISRALSRLEKKLDTTLMRRTTRRLELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G E+ + +E + ++ + P+G+LR+ ++++ + F YP Sbjct: 61 EEGQSFLGHAREIINSVENAEEQMALRRLIPAGRLRVNAAAPFMEHVIVPLVAGFRQSYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+++L DN ID+ D AIR+ ++ S++ R L + A+P YL P Sbjct: 121 QIELELNTDNLIIDLLEKRTDIAIRI-GALRDSTIHARLLGASRLRILASPDYLARYGTP 179 Query: 181 LSIQELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 S++ L H+L+ F +L P + A P IS +S ++ Q Sbjct: 180 ASVEALRDHSLLGFTQPESLNLWPLRYQQAQHFAIT------PTISA---SSGETLRQLA 230 Query: 236 VLGSGIALLPDYIVKDNP---NLVRIME----DVITPSFTVYF 271 + G GI L D++ +D+ LV ++E DV P VY+ Sbjct: 231 LRGEGIVQLADFMTRDDQRSGRLVPLLEQDTLDVRQPINAVYY 273 >gi|320084383|emb|CBY94176.1| Uncharacterized HTH-type transcriptional regulator ycaN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 313 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++A + SFT AA QLH+S S++S+ + LE E+G+KL R R + LTE G Sbjct: 15 LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++S P G LR+ LLQ NL F+ YPDI++ + Sbjct: 75 ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR +Q + + A+P YL PL QEL Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 194 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + + ++ R P + L VN + G+G+ + + Sbjct: 195 NHRCLCHRFTRESGLYRWEFVRGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 253 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 V + + L ++E+ + + Y YP KL+ F ++ KA Sbjct: 254 DVHEDLQDGQLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303 >gi|319793586|ref|YP_004155226.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596049|gb|ADU37115.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 311 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 4/187 (2%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V GSFT AA+ L S ++++R ++ LE + +L R +R L+LTE Sbjct: 2 DRLRAYEVFVTVVARGSFTKAADALDTSPANVTRYVNELEAHLRTRLINRTSRRLSLTEG 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + ++ T+ +S++P G+LRI + G +L +F+ YPD+ Sbjct: 62 GEALFDRAKSILEEVAETEALATTASLQPRGRLRINAPLSFGSLVLAPLWPKFMAKYPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + L ++ +DI + D AIR+ + S + I R+L A+P YL + P Sbjct: 122 ELDIALIDRVVDIVEEGYDLAIRISR-TSSGNHIARRLGRSQNLVCASPDYLSSHGMPQV 180 Query: 183 IQELDKH 189 +L +H Sbjct: 181 PADLSRH 187 >gi|78063497|ref|YP_373405.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971382|gb|ABB12761.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 310 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 125/289 (43%), Gaps = 17/289 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 12 NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + +L VK L I+TT L L +F +PD ++ Sbjct: 72 YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTDAHPDYDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +I D + D D AIR KP L L + + A +P L P S + Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVCAVCSPALLA---APASPRA 184 Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ DL P+ +LA + P+ L+ N + V G GIAL Sbjct: 185 LAGHVLLHDAHDLWPE------FLAAMPEPVDLDPHKGLRFNQTSLAIDAAVAGQGIALA 238 Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 D +V+ + R+ + D P S Y YP ++ + R ++ Sbjct: 239 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIVVMREWM 287 >gi|330979517|gb|EGH78120.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 294 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 9/278 (3%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-RVTSE 72 +A GSFT A + + ++R I LE + ++LF R R + LT +G + + RV + Sbjct: 2 LAELGSFTKVAGATQVGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFYERVKNN 61 Query: 73 VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132 + ETT + + S G+LRI Q +LK F +PDI++ L + ++ Sbjct: 62 LADLAETTSMFDRNGSTL-RGRLRIDIPAAFSQRSFMESLKGFTRAFPDIELALGVTDRT 120 Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192 +D+ + DCA+R+ + + SSL+ R++ M AAP YL+ P ++ EL H + Sbjct: 121 VDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLDELAGHCGV 179 Query: 193 TFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251 +F L + W +++ P + VN + +Q + G GI P V+ Sbjct: 180 SF--LSGQSNRPLPWHFSLNGDDFALPPRGGITVNESNAYVQCGLAGFGILQAPGIAVES 237 Query: 252 ---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + LV ++E V YP +++AF Sbjct: 238 FLASGELVEVLEKFRPLPRPVSVLYPSRTHLAPQVQAF 275 >gi|319760839|ref|YP_004124776.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gi|317115400|gb|ADU97888.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] Length = 312 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 10/285 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F+++ R GS + A +L L+ ++SR+++ LE +G++L R R +LT +G + Sbjct: 14 FHLLVRCGSLSATARELGLTTPAVSRKLALLEQRLGVQLLNRTTRRNSLTPEGEEYLVQA 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +E + L+ S +P G LR+ T+ G++ + + F YP +QIQ L Sbjct: 74 RRILADIEDVEHSLRRSMAEPLGLLRVNATLGFGRSHIAPVISRFCKTYPQVQIQFHLSV 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++ D D IR +P + +I RK+ AAP YL+ P +L +H Sbjct: 134 TPPPLTDDAFDVCIRFGEP-PDARVIARKVAANRRLLCAAPAYLERHGTPRVPADLVRHQ 192 Query: 191 LITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDYI 248 I+ I + + W + R +++ V + I + + + G GI + ++ Sbjct: 193 CIS----IHHGQDAYGIWRLSAGRRTESVKVAETMVTNDGDIAVAWALDGHGILMRAEWD 248 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + L +++E TP +Y YP + ++ AF +F+ Sbjct: 249 IDKYLHSGRLRQVLEQYSTPPADIYAVYPSRHQKARRVTAFVDFL 293 >gi|262043623|ref|ZP_06016732.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038961|gb|EEW40123.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 313 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AAE+L +S + +S+++S LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ EL + P G LRI ++ G+ ++ L L YP ++++ Sbjct: 68 IYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D IR+ I + +LI R+L H A+P +L P + + Sbjct: 128 FDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHASPKQLSD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LAA---------LP-CLV----IKERDHPFGVWQLHSKEGQHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V++N +LV+++ D P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 291 >gi|260466672|ref|ZP_05812859.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259029535|gb|EEW30824.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 301 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 17/299 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63 + + +F A SGS + AA L +++SR++S LE + +L R R LTLT+ G Sbjct: 5 EAMSLFVAAAESGSLSAAARHLGTPLATVSRKVSELERHLKTRLLNRSTRRLTLTDAGHA 64 Query: 64 --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 + R+ +V T E P+G+L I +I G+ + + FL YP Sbjct: 65 YLAACRRILEDVGDAERTAGGEYS----APTGELIITASIVFGRLHVLPVVTAFLAAYPQ 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I+L L ++ ++ D+ D AIR+ + + S ++ ++ +I A A+P YL P Sbjct: 121 VDIRLTLGDRIAQLAEDHIDLAIRIGR-LPDSRMVATRVGSIRHVACASPAYLAEHGAPK 179 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240 + ++L+ H+ ITF L W VD+ + P S L+VN+ + + G G Sbjct: 180 TPKDLETHSCITFEGLGSLA----TWTFAVDKSDVPVPVRSRLRVNTAEAAIDAATAGVG 235 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + + Y IV + L ++ED + V + + KL+AF +F + R+ Sbjct: 236 MTRVLSYQIVAAVRSGALQPVLEDFEPEPWPVNLVHAGQGRLPVKLRAFLDFAGPRLRE 294 >gi|238028095|ref|YP_002912326.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gi|237877289|gb|ACR29622.1| Transcriptional regulator, LysR family protein [Burkholderia glumae BGR1] Length = 327 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 23/300 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + + + L F V G F+ A L +S+S +SR+++ LE +G++L R R L LTE Sbjct: 5 AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G ++ + + + +Q+ P G +R++ + L Q ++ L EFL +P+ Sbjct: 65 AGQLFYQHCQAMLAEAQAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLHRFPE 124 Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++ + + N+ ID+ D D A+R+R +P ++++++ R L +P L P Sbjct: 125 VRVLVRVTNQVIDLFEDSIDVALRVRSEPPENANIVVRPLWRTEQMLVGSPSLLSQNAPP 184 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233 L+ +L + + P D + T+ P G EPR L ++I + Sbjct: 185 LAPGDLGRFETLD----TPSG--DGRHVFTLIAPDGTRHQHEHEPR---LVTADLMTIRE 235 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G GIA LP+ + + L +M P +Y + + G A R+F+ Sbjct: 236 AVLDGVGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRSFV 292 >gi|169794243|ref|YP_001712036.1| putative transcriptional regulator; transcriptional activator [Acinetobacter baumannii AYE] gi|215481801|ref|YP_002323983.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter baumannii AB307-0294] gi|239502768|ref|ZP_04662078.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter baumannii AB900] gi|301509960|ref|ZP_07235197.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter baumannii AB058] gi|332850321|ref|ZP_08432655.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332871571|ref|ZP_08440065.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169147170|emb|CAM85029.1| putative transcriptional regulator; transcriptional activator [Acinetobacter baumannii AYE] gi|213988055|gb|ACJ58354.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter baumannii AB307-0294] gi|332730779|gb|EGJ62089.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332731425|gb|EGJ62717.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 300 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 145/300 (48%), Gaps = 20/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +R+ + +++ + +F YPDI+I+ Sbjct: 66 FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + ++ A+P YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184 Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L+ H+LI F + P + D + A S ++ +S ++ Q + G G Sbjct: 185 LEHHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IA L ++ I KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|241207243|ref|YP_002978339.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861133|gb|ACS58800.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 30/306 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF VA + +F A E+L +++S++S+ + LE VG+ L R R ++LT Sbjct: 1 MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRVGVALVQRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119 E G ++ ++E +PSG LRI T + +N L G L F+ Sbjct: 61 EAGEVFFEAVRPSVRQVNDAMQTVREMQARPSGLLRI-TVSSIAENFLSGTLLAGFMEAC 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHY 173 PDI++ + + + + DI D +RL +I++ ++ I + A A+ Y Sbjct: 120 PDIKLDITITDDEFDIVEAGFDAGVRL------GEVIEQDMIAISVSEEQRQCAAASRSY 173 Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYL 229 L P +EL H I + D P + W T DR + N Sbjct: 174 LDRRGHPRHPRELQNHACIGWRPRPDTAP-----YRWEFTENDRDFDVSVDPTVTTNDMG 228 Query: 230 SIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +++ G+GI YI D LV ++ED P Y YP + KL+ Sbjct: 229 MMIRMACAGAGITFGMAETFQSYI--DRGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLR 286 Query: 285 AFRNFI 290 A +++ Sbjct: 287 ALVDYV 292 >gi|148977078|ref|ZP_01813718.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] gi|145963547|gb|EDK28809.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] Length = 192 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 1/186 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ + F VA F+ AA+QL S S +SRQ+S LE VG+ L R R ++LTE G Sbjct: 4 FEGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTESGH 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++ L+ ++ + SG LR++ +N + L EF +PD+ I Sbjct: 64 TYYQQCKDLVIGLQQANEQVASQQTQLSGTLRVSAAGAFAENHVAAALMEFAKSHPDLTI 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + K ++ D D AIR + + S L+ RKLV M A A+ Y+ P + Sbjct: 124 EMNFNTKMVNFIEDGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASKAYIDQYGAPTHPE 182 Query: 185 ELDKHN 190 +L +H+ Sbjct: 183 QLKQHS 188 >gi|323529971|ref|YP_004232123.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386973|gb|ADX59063.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 297 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 11/289 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F VA SFT AA +L SQS++S LET +G++L R R + LT G Sbjct: 5 DLIDLNAFVAVAEERSFTRAAARLLTSQSALSHTSRRLETRLGVRLLTRTTRSVALTPAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + ++ T + P G LRI T ++L ++EF+ YPDI Sbjct: 65 ETFLQGLKPAFEAIDLTLGTVGSLRESPRGTLRITTPRHAAVSVLWPVVQEFVRDYPDIH 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ +D D++ D D IRL + + + + + + + A P Y+ P Sbjct: 125 VEVNIDAAFRDLADDRFDAGIRLGELVAPNMVAVKIGPALRLAIVATPGYVAQRGIPTHP 184 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 +L +H I F +P + W R + R+ L + I+ V G G+A Sbjct: 185 HQLAQHACINF--RLPGSGALYAWQFKKGRQEMKVRVEGPLTFDDPDMILAAAVDGQGVA 242 Query: 243 -LLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 L+ D+ +++D LVR++ED + +F+ Y Y KN AFR Sbjct: 243 CLIEDHAAPMIRDG-RLVRLLEDWCS-AFSGYHLYYPTRKNNS--AAFR 287 >gi|241206800|ref|YP_002977896.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860690|gb|ACS58357.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 300 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 16/292 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R + + LT G Sbjct: 14 LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMLLTLAGDGYA 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R E ++ + + L+ + G L +A G L L FL+ P + I L+ Sbjct: 74 REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLVANPGVTINLV 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPLSIQE 185 D +D D AI P + + L++ +P +LK + P + Sbjct: 132 TRLSPFDFRLDSIDAAIHFGHPHWPGAELA-LLMSERTVPACSPDFLKRYAIKAPEDLLA 190 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 +L T P E W A + + + + + + Q + G G+ALLP Sbjct: 191 APLLHLTT----RPDAWE--QWFA--GNGVSFENVHGMLFDQFATAAQAAIAGLGVALLP 242 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 +++++ +LV ++ + Y +P + L AFR++I +A Sbjct: 243 TFLMQEEIRRGDLVAAVDREMESRERYYLAFPPERADYAPLAAFRDWIIAEA 294 >gi|146291222|ref|YP_001181646.1| LysR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145562912|gb|ABP73847.1| transcriptional regulator, LysR family [Shewanella putrefaciens CN-32] Length = 320 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/272 (24%), Positives = 126/272 (46%), Gaps = 9/272 (3%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F VA+ GSFT AA+ L ++ S++S+ I LET +G KL +R R ++LT G Sbjct: 20 EIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 79 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 L+ Q L PSG++R+ + G+ + L YP +++ + Sbjct: 80 LIDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 139 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +++ D+ D D A+R+ + + L+ R+L A+P Y P S ++L Sbjct: 140 TFNDRATDLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFGRLGTPQSKEDL 199 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL--QVNSYLSIMQYCVLGSGIALL 244 +H I L + WL + I E + ++ +I+ + G G+A + Sbjct: 200 SQHQCIVGWPL----GQQHRWLLKNEDGITEAHDIPVRHEIADCEAILAATLAGVGLAQV 255 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273 P ++V+D LV +++D+ + ++ + Sbjct: 256 PIWLVEDYLKTGELVSVLDDLASDDTPIHLIW 287 >gi|307609093|emb|CBW98533.1| hypothetical protein LPW_03631 [Legionella pneumophila 130b] Length = 287 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 14/290 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D++ F V F AA + +S +++SRQI+ LE E+ +L R R L+LT+ G+ Sbjct: 4 FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + +L +I + S + G L + ++ L L EF+ L P +QI Sbjct: 64 RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123 Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L + D++ + D + + P + L+++++ T A+P YL P S Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGPPE---LVRKRVSTTRYVLCASPDYLAKNGIPKS 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 EL KH IT P + F ++ EP L +N ++ + +LG GI Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFK---DNEQIYVEP---VLWLNDSRALCECALLGMGII 234 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L +YIV + + L+ ++ + S +VY Y + K++ F +F Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284 >gi|307295586|ref|ZP_07575422.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] gi|306878625|gb|EFN09845.1| transcriptional regulator, LysR family [Sphingobium chlorophenolicum L-1] Length = 319 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 21/291 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF AR +FT AA++L ++Q+++S Q+ LE +GI LF R R + LT++G ++ Sbjct: 23 VRVFEAAARLENFTAAAQELGMTQAAVSYQVKLLEERLGISLFQRAGRKVALTDRGREIA 82 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V S + ++ L + S L I+ L + F + +P + +++ Sbjct: 83 TVVSRAFDQMREGFAALTQDH---STVLTISCMNSFAHLWLAPRIGTFQMRHPGLAVRID 139 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYL-KNCREPLSIQE 185 N+ +D + D D A+R + I ++ KL+T + A +P +L KN P++ Sbjct: 140 ATNRVVDFARDGVDVAVRGGEGIWPG--VEAKLLTHNRIAPVCSPGWLAKNG--PIA--- 192 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 D H L L P + W A V G+ + ++S + + G G+A++ Sbjct: 193 -DAHALHAMPRLSPDDLWWHEWFAGVGVEADGKGLRPAIALDSQAMEGRAAMAGQGVAIV 251 Query: 245 PDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290 ++ K ++E V PS+ + + YP +N K+KAFR++I Sbjct: 252 NPFLWKAEMEAGLLVEAV--PSYVRERASYWVAYPPHARNAPKVKAFRDWI 300 >gi|270260903|ref|ZP_06189176.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044387|gb|EFA17478.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 296 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 15/294 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V GSF AA+++ +S + + + I LE + L R R LTE G + Sbjct: 9 VFVRVVEKGSFVAAADEMAISPTMVGKHIRYLEQRLNAPLLNRTTRRQGLTEAGRVFYER 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + + PSG LRI+ + G +L L EFL +PD++ +++L Sbjct: 69 CRRLLADADAAEASARALLSSPSGLLRISAPVTFGNRVLTPILTEFLQQHPDVEAEVVLS 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + + A R+ P+ L+ R L M A+P YL P ++L +H Sbjct: 129 DRKVDLIEERYEAAFRI-GPVADDGLVARALPDYRMTLAASPGYLTQHGVPTRPEQLSEH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + F D N + GE P L+++S + + + G GIAL Sbjct: 188 SCFGFSQW------DGNHFWRLQGAQGEISVPVRPRLRMDSGEGVRRAALAGFGIALHAA 241 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 ++ ++ LVR++ D ++ Y + + KL+AF AR W Sbjct: 242 MLLDEDIAAGRLVRVLPDYSPLPRPMHLVYLPERRQSPKLEAF--IALTVARLW 293 >gi|260553874|ref|ZP_05826142.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260404994|gb|EEW98496.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 300 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELIAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLIERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +R+ + +++ + +F YPDI+I+ Sbjct: 66 FLTKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFREYYPDIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + ++ A+P YL P +E Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184 Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L +H+LI T+ + P + D + A + ++ +S ++ Q + G G Sbjct: 185 LKQHDLIGFTRPTYINSWPIKIGDEYFFAQAN----------IKASSGETVRQLTIRGHG 234 Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IA L ++ I KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294 >gi|170700036|ref|ZP_02891060.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|172062405|ref|YP_001810056.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170135051|gb|EDT03355.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gi|171994922|gb|ACB65840.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 309 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%) Query: 23 AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82 AA QL ++ S ++ +I LE V LF+R R + L++ G +R +EV ++ Sbjct: 22 AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSDVGETFYRECAEVVGRVNELTD 81 Query: 83 ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142 +++E P+G+LRI + L EF YP IQ+ +I++++ +D + D Sbjct: 82 QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDIIVNDRVVDPVEEGFDI 141 Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202 A ++ PI S SLI+R+L + A+P YL P +EL +H + + Sbjct: 142 AFQIFPPI-SESLIERRLFVVRRLFCASPAYLDAHGAPQHPRELLQHTTALYSGYPSRN- 199 Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258 W T + E + ++ NS + +Y + G G+ LP + + LV I Sbjct: 200 ---RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPI 256 Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + D + YP + K+KA F+ Sbjct: 257 LTDFQIAPLSFAAVYPATQRQALKVKALVEFL 288 >gi|85060105|ref|YP_455807.1| transcriptional regulator [Sodalis glossinidius str. 'morsitans'] gi|84780625|dbj|BAE75402.1| transcriptional regulator [Sodalis glossinidius str. 'morsitans'] Length = 307 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F V SFT A L L +S+++ I LE +G L +R R +T T+ G L+ Sbjct: 7 LQSFVWVVELASFTQAGNTLGLPKSTVAEHIQTLEGVLGACLLHRTTRRVTPTQDGLVLY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +V +E ++ P G+LR+ + + L EFL +P IQ+++ Sbjct: 67 DRARDVLASMEELDGLFRQQGPVPDGRLRVDMPTAFARLEVFPRLGEFLQAHPAIQVEIS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D+ DC +R+ + + +L+ R+L + M YA+P YL+ P++ +LD Sbjct: 127 CTDRRGDVVRKGFDCVVRIGQ-LNDDNLVARRLGKLRMINYASPAYLRAYGVPVTPADLD 185 Query: 188 KHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +H LI + ++ E F + + + P+ R++ ++Y + C+ G GI Sbjct: 186 RHVLIDYVQVLGSQSEGFVYQQHGRMVSRQMPV---RVTVNNADAYEAA---CLNGLGII 239 Query: 243 LLP--DYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P YI + + LV I+ + P + Y ++K F +++ Sbjct: 240 QVPVARYIGLFTSGQLVEILPYYLPPPMDITLLYAHRRHLPPRVKVFIDWL 290 >gi|330811022|ref|YP_004355484.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379130|gb|AEA70480.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 332 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 5/191 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ +F V +GSF+ AA Q S S+ISR IS LE + +L R R L L++ G ++ Sbjct: 12 EMAIFVKVVETGSFSEAARQSGSSPSAISRSISRLEKALATRLLQRTTRKLRLSDGGEEV 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + E+ + + + + G++R++ +G+ ++ ++ EFL YP + ++L Sbjct: 72 FKRCQEMVAAARSVMEISGQFTQEAEGRIRVSVPKAVGRFVIHPHMPEFLRRYPKVDVEL 131 Query: 127 ILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+++ +D+ D+ D AIR+ + P+ L+ R+L+TI A P YL P Sbjct: 132 FLEDRQVDLIDDHVDLAIRITDQPPV---GLVGRQLLTIDHLLCATPQYLAEHGTPTHPH 188 Query: 185 ELDKHNLITFG 195 +L +H+ I G Sbjct: 189 DLLEHSCIYLG 199 >gi|288961046|ref|YP_003451385.1| transcriptional regulator [Azospirillum sp. B510] gi|288913354|dbj|BAI74841.1| transcriptional regulator [Azospirillum sp. B510] Length = 310 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/305 (26%), Positives = 132/305 (43%), Gaps = 30/305 (9%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR VF +A SG AA L LS + +S ++ LE +GI L R +G +LT Sbjct: 2 DKLRAMEVFVQIADSGGIRSAASMLRLSPAMVSMHLAQLERTLGIPLIQRSPKGSSLTTD 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + +L +S G+L I +G ++ L EF+ YP+I Sbjct: 62 GQSYLDHCRTILEQISGAEAQLSGTSGLRRGRLSIDMPATVGNCIVLPILPEFMAQYPNI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + D+S + D IR+ PI + LI R L + AAP YL + EP + Sbjct: 122 TFDISYSARAFDLSDEGYDIMIRV-GPIADTGLIARPLGFCQLATAAAPSYLAHHGEPQA 180 Query: 183 IQELDKHNLITF-----GDLIP-KCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSI 231 I++LD H +I G ++P + + D + ++ GEPRI Sbjct: 181 IEDLDTHRVINIRSSRSGRIVPWQFVRDGQTMFRELPGSLLFNDGEPRIHA--------- 231 Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 +LG G+ P Y + N L RI+E + Y ++ + AF + Sbjct: 232 ---ALLGLGLVQAPVYQLSGLLANGRLCRILERFDARMPQISLLYSPQRRSQQLVHAFID 288 Query: 289 FIFLK 293 F+ + Sbjct: 289 FLLAR 293 >gi|222084573|ref|YP_002543102.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722021|gb|ACM25177.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 32/302 (10%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD +R F VAR GS AAE L + S++ R+I+ LE +G ++F + G LT Sbjct: 2 IDWDDIRYFLAVARGGSVRAAAEGLGVYHSTVLRRIAQLEERLGAQMFEKLPSGYRLTAA 61 Query: 63 GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G ++ + +E+ H+LE T++ ++ SV+ G LR+ L +LL +L +F L+ Sbjct: 62 GEEVLELANEMEASSHQLE-TRVFGRDQSVR--GLLRVTLAPTLATHLLMPDLADFAHLH 118 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 PDI++ ++ + +++ AD AIR+ + RK + +++H P Sbjct: 119 PDIEMDIVSSGELANLTNREADVAIRV--------VYDRKTLPLNLHGLKGPELFSGV-- 168 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSYLSIMQ 233 + + L + P + W+ I GE R + + + Q Sbjct: 169 -----YMSRDRLAAWHSGAP---DPVRWIVISIHGIPDWASEGEVRTTGVPFRTTDGEAQ 220 Query: 234 YCVL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + G G+ LP ++ +P LVR+ + T++ + T +++ F F+F Sbjct: 221 IVAVRQGLGMTTLPCFVGDADPLLVRVPGTDLHMHGTLWLLTQGETRKTKRVRLFTEFVF 280 Query: 292 LK 293 + Sbjct: 281 RR 282 >gi|170750230|ref|YP_001756490.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656752|gb|ACB25807.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 290 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 16/287 (5%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DWD R VA G T A+ +L ++ S+ R+++ LE +G +LF R G T Sbjct: 1 MELDWDDFRFVKAVADRGGLTAASAELGINHSTAFRRLAALEARLGTRLFERLRTGYVPT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + + + PSG+LR+ LL L F YP Sbjct: 61 AAGQAMVDAAGRIETDVTRFARAVAGQGETPSGELRVTAPAGFAAELLMPMLASFAERYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +I+I+LIL +++S AD AIR+ R+P S +L+ R+L Y R Sbjct: 121 EIRIELILAEATLNLSRRDADVAIRISREP--SETLVGRRLALTAWAVYG--------RA 170 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 + +L + I+ G L+ P R L++N+ + G Sbjct: 171 DRAYGDLAREAWISPGPLV--AGGSLTRFVEARAPSDRVR---LRINAVPGLEAAVEAGL 225 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GI LP + NP L R+ ++ L++ +++AF Sbjct: 226 GIGPLPCFTADVNPALRRLSGPHPELGADLWILTHPDLRHAARVRAF 272 >gi|197247928|ref|YP_002145124.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211631|gb|ACH49028.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 307 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++A + SFT AA QLH+S S++S+ + LE E+G+KL R R + LTE G Sbjct: 9 LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++S P G LR+ LLQ NL F+ YPDI++ + Sbjct: 69 ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR +Q + + A+P YL PL QEL Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + + ++ R P + L VN + G+G+ + + Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 V + + L ++E+ + + Y YP KL+ F ++ KA Sbjct: 248 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297 >gi|124267309|ref|YP_001021313.1| LysR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260084|gb|ABM95078.1| transcriptional regulator, LysR family [Methylibium petroleiphilum PM1] Length = 293 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 1/185 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++VF + GS + A QL+LS S+IS+ +S LE+ +G++L R R L+LTE G + Sbjct: 1 MQVFVESVKRGSLSAAGRQLNLSPSAISKLLSRLESRLGVRLINRTTRSLSLTEGGERYF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + E+ +E+ + L +P+G LRI +T ++ L + EF YP + ++L Sbjct: 61 KRCLEILTDIESAEDSLTSFVREPTGTLRINSTQGFAKHQLLEFMAEFQGRYPRLTLELQ 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ + D AIRL + ++ +SL+ RKL A+P YL P +L Sbjct: 121 ITGQAVDLIDEGVDLAIRLGE-LRDTSLVGRKLGESQRLVCASPQYLNARGRPTRPSDLL 179 Query: 188 KHNLI 192 H+ + Sbjct: 180 DHDCL 184 >gi|254467513|ref|ZP_05080923.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] gi|206684514|gb|EDZ44997.1| transcriptional regulator, LysR family [Rhodobacterales bacterium Y4I] Length = 295 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 21/291 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-S 64 D +R F VA SFT A Q+ +S S+ ++ LE ++G +L R R +TLT+ G + Sbjct: 5 DCMRTFAAVAAQSSFTGGARQMGISTKLASKYVARLEEQLGAQLLNRTTRKVTLTDTGRA 64 Query: 65 KLHRVTS--EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 L R + + +LE ++L++ + +G +RI LG L L F +P + Sbjct: 65 YLERCLPLLDQFDELEDV-VQLRQQEL--AGPVRITAPTGLGSRELVEALHPFQQAHPKV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L+L ++ + I + D A+R ++ S+L+ RKL ++ A+P YL EP Sbjct: 122 TVELVLSDRHLPILEEGVDLAVRF-GALKDSTLVARKLCSMRRVVVASPEYLAAHGEPAG 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239 + L N + L+ + W R G I+ + NS ++ G Sbjct: 181 PEALAARNCL----LLTSAPQPEAW--AFGRGSGARTITVGGSFRANSPRAVAHMAAHGL 234 Query: 240 GIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GIA P Y ++D L + E T T+Y YP + T +++A Sbjct: 235 GIARCPHYTALPFLRDG-RLQVLFEKQETDPVTLYAVYPPSRHLTARIRAL 284 >gi|116250064|ref|YP_765902.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254712|emb|CAK05786.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 297 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 30/306 (9%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D + + VF VA + +F A E+L +++S++S+ + LE VG+ L R R ++LT Sbjct: 1 MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRVGVALVQRTTRSVSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119 E G +++ ++E +PSG LRI T + +N L G L F+ Sbjct: 61 EAGEVFFDAVRPSVRQVKDAMQTVREMQARPSGLLRI-TVSSIAENFLSGTLLAGFMEAC 119 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHY 173 PDI++ + + + + DI D +RL +I++ ++ I + A A+ Y Sbjct: 120 PDIKLDITITDDEFDIVEAGFDAGVRL------GEVIEQDMIAISVSEEQRQCAAASRSY 173 Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYL 229 L+ P EL KH I + D P + W T DR + N Sbjct: 174 LERRGHPRHPGELQKHACIGWRPRPDTAP-----YRWEFTENDRDFDVSVDPTVTTNDMG 228 Query: 230 SIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 +++ G+GI YI + LV ++ED P Y YP + KL+ Sbjct: 229 MMIRMACAGAGITFGMVETFQPYI--ERGELVPLLEDFCPPFAGFYLYYPRRQRQPLKLR 286 Query: 285 AFRNFI 290 A +++ Sbjct: 287 ALVDYV 292 >gi|50085610|ref|YP_047120.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1] gi|49531586|emb|CAG69298.1| putative transcriptional regulator (LysR family) [Acinetobacter sp. ADP1] Length = 288 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 133/263 (50%), Gaps = 18/263 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD ++VF VAR+G+ T AAE+L+L +++SR++ LE ++ + LF RH G LT +G Sbjct: 3 WDDVKVFLAVARTGTLTTAAEKLNLGIATVSRRLERLEQDMAMTLFTRHQTGYQLTLEGE 62 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L +E + + E ++ + G +R+A + +L L+ +L+ +P+++I Sbjct: 63 AL-LSNAEAFENAALSLTESGQNHAQAQGLVRLAVSENLANGLIIPSLQSLFSRHPELRI 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ AD AIR +P +L ++L T+ YAA Y+K IQ Sbjct: 122 EINSGVQLTNLHRRDADLAIRTIQP-DVGNLTIKRLGTLRFGLYAATSYMK------FIQ 174 Query: 185 ELDKH----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + D H + + + D + + +W+ R + ++ NS + + G G Sbjct: 175 DHDLHPDQCHYVGWAD-THQHLSLAHWMKDFTR----NQNFKIETNSLSTQIDAVKSGLG 229 Query: 241 IALLPDYIVKDNPNLVRIMEDVI 263 I LLPD+I + LV+I ++ + Sbjct: 230 IGLLPDFIA-NQLGLVQINDNTL 251 >gi|238764778|ref|ZP_04625720.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia kristensenii ATCC 33638] gi|238696976|gb|EEP89751.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia kristensenii ATCC 33638] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 12/286 (4%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68 VF + GS AAE L++S++ ++R ++ +E G +L +R R L+LT G S L R Sbjct: 9 VFVAIVERGSMIAAAEALNMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGESTLTR 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 + + +E QE+ + G LRI+ + LGQ+ + + ++L +P + + L + Sbjct: 69 CRHMLEFAKDMDLVEGQEND-ELRGLLRISCSQSLGQSAVAIAVTDYLRRHPQVAVDLQM 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 DN+ +++ + D A+R+ + +LI R L H AAP YL P S +L Sbjct: 128 DNRTVNLVEERIDLALRITNDLD-PNLIARPLSICHSVVCAAPSYLSAKGIPKSPPDLAV 186 Query: 189 HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +T+ K + F+ +G L N + ++ + G+GI L P Y Sbjct: 187 HNCLTY-SYFGKSLWHFDHQGIKSSVAVG----GNLSANESVVLLSGALDGAGITLQPSY 241 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L+R++ D + +Y Y + L++ +F+ Sbjct: 242 SAAPYIARGELIRLLPDYQPQAMGIYGIYTSRRQMPATLRSMLDFL 287 >gi|218682783|ref|ZP_03530384.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CIAT 894] Length = 298 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 126/295 (42%), Gaps = 17/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A +L ++Q+++S QI LE VG LF R R + LTE Sbjct: 7 FPLNALRVFEAAARLGSFTKAGGELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIVLTET 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ ID + + D IR L+ +L+ + +P ++ Sbjct: 124 AVRFQATADIIDFTREQIDVGIRWGDG-NWPGLVLHRLMGLEFTPMLSPKLAESAGGIKE 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++L K +L GD+ K + + D RP + ++ ++ ++ G Sbjct: 183 PRDLLKFDLFDAGDIWWKQWFEAAGVTETDLDRRPRNQLGSQAVEADAAMA-------GH 235 Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A+L L R+ E + + YP+ +N K+KAFRN+I Sbjct: 236 GVAILNPAFYAGEIALGRLYQPFELTRSDGKAYWLVYPDNRRNVPKIKAFRNWIL 290 >gi|319791750|ref|YP_004153390.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594213|gb|ADU35279.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 327 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 145/299 (48%), Gaps = 21/299 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VAR +F AAE++ L+QS++SRQI LE EVG+ LF RH R + LT G++L Sbjct: 18 LRAFEAVARHLNFRAAAEEMALTQSAVSRQIQSLEEEVGVSLFLRHTRAVELTSAGAQLL 77 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +++ ++++S+ + S + + T L L+ F P+I I+ Sbjct: 78 LSVQQSLPRIDMAVRQIRQSAGRKS--VSLTTFASFASMWLIPRLEAFQRDNPEIDIR-- 133 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 +D D+ + ++ AD I LR P ++ +L ++ A+P +K+ + +++ Sbjct: 134 IDASDVAVDLEVADVDIALRYGPREAMPPTAVRLFGENLTPVASPWLIKSSPPIKTPEDI 193 Query: 187 DKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 + LI GD +E W + ++R +P+ L N ++Q + G G+ Sbjct: 194 TRFTLIEAGDAHRTHLEWLTWRRWFEVNGLER--AQPK-RWLYFNYAYQMVQAALTGQGV 250 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP---EALKNTGKLKAFRNFIFLKA 294 L ++ + N +LV ++ S Y+ AL+ ++KAF +++ L+A Sbjct: 251 VLARSSLIAESLANGDLVEVLPQHRMDSPMSYWLIAGPRNALRP--EIKAFWDWLLLQA 307 >gi|238896749|ref|YP_002921494.1| putative DNA-binding transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238549076|dbj|BAH65427.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 309 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 37/302 (12%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R L LTE G Sbjct: 6 RMSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ + + + +L + P G LRI + + QN+L + L YP + + L Sbjct: 66 YQGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D+ D D IR+ +Q SSL R+L ++ M AA YL P +L Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP------IGEPRISC-------LQVNSYLSIMQ 233 H WL RP I IS N +++++ Sbjct: 185 AGH----------------AWLEYSVRPDNEFVIIAPEGISTRLTPQGRFVTNDPMTLVR 228 Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRN 288 + G GIA +P + N R +++ PS+ VY Y E K K++ N Sbjct: 229 WLTAGVGIAYVPLMWAIEEIN--RGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCIN 286 Query: 289 FI 290 ++ Sbjct: 287 YL 288 >gi|172065035|ref|YP_001815747.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997277|gb|ACB68194.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 313 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F VA GSFT AA++L ++ + SR ++ LET + +L R R + LT+ G + Sbjct: 7 MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + E ++ KPSG+L + T GQ + + + YP + ++L Sbjct: 67 DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126 Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L DI + D +++L + S L+ ++L +H A+P YLK P S+++L Sbjct: 127 LSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTPHSVRDL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242 + H+ + + P D W +D P G E + QVN ++ G GI Sbjct: 187 EAHSCLQI--VTPIFPRD-RW--HLDGPDGRETFELPLPDFQVNIADALGAALRAGLGIG 241 Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP + LVR++ + TVY Y K++ F +F+ Sbjct: 242 SLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292 >gi|73539022|ref|YP_299389.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gi|72122359|gb|AAZ64545.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] Length = 312 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 131/283 (46%), Gaps = 21/283 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + +W +F V G FT AE + +SS S ++ LE+++G++LF R R + +TE Sbjct: 3 TIEWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLESQLGVRLFERTTRRVRVTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G +L+ + ++ +L E S + SG LRI+T ++G L L + L+P Sbjct: 63 RGQRLYDRVAPLFAELHEINAEAASVSDEVSGVLRISTPYEVGSQHLSDGLSRLMRLHPR 122 Query: 122 IQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +++ + + D D+ I Y + +Q +S +++V I YAAP +++ Sbjct: 123 LRVHVDVSWDQPDL-IRHGYDLAFVMTNTRLQDTSFASKRVVLIERGFYAAPALIRDRGL 181 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQY 234 P + Q+L T G+ +D W D R EPRI C N+ L ++ Sbjct: 182 PRTPQDL--AGWPTLGN-----ADDHFWEFLRDDIETARLDVEPRI-CTH-NAELR-LKA 231 Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274 + G G+A L V+D LVR++ + VY P Sbjct: 232 AIDGLGVARLSPRFVQDQIQQGQLVRVLPAYSSSPLKVYVLMP 274 >gi|13473281|ref|NP_104848.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14024029|dbj|BAB50634.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 302 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 137/294 (46%), Gaps = 18/294 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW+ ++ F VA +GS + AA +L SQ ++ R I LE +G+ LF R G LTE Sbjct: 4 IDWNLIKSFVTVAETGSLSAAARKLSASQPTLGRHIGELEQALGVTLFRRGRSGYALTEA 63 Query: 63 GSKL---HRVTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116 G+ L + SE + +L +E E G +RIA + + +L Sbjct: 64 GATLFERGKAVSEQASAFSRLALGSVEAIE------GTVRIAASEVVAAYVLPDMTARLG 117 Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176 + P I+++++ N+ ++ AD AIR+ KP Q + L+ RK+ I + A AA YL Sbjct: 118 VEEPGIEVEIVASNQVENLLRRDADIAIRMVKPAQ-NELVARKVCDIELCACAAISYLDR 176 Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 P+ +L H LI F D + + F P+ + ++ + + + Sbjct: 177 RGRPVGPADLVDHPLIGF-DRSDEMIRGFTQFGI---PVTRSSFR-FRADNQVVLWEAVR 231 Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+GI L + + +P + +++ + PS V+ ++++ +++ +F+ Sbjct: 232 AGNGIGLGQEPLADRDPLVEKVLPGLPLPSLPVWLAMHRDVRSSVRIRRVADFL 285 >gi|99078453|ref|YP_611711.1| LysR family transcriptional regulator [Ruegeria sp. TM1040] gi|99035591|gb|ABF62449.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040] Length = 304 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 135/293 (46%), Gaps = 14/293 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F V G+ + AA + +S + S +IS LE + ++LF R R L TEQG Sbjct: 5 NNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEEHLKVRLFQRTTRLLHPTEQGQL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ +E + ++ + P G L +A + LGQ L+ + +F YP I I+ Sbjct: 65 FYHGAVKILEAVEEAEADISNVTQTPRGTLYVAAPLGLGQRLIAPAVPQFNAAYPLINIR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ +D++ + D A L P + S+L RK+ AAP YLK P S E Sbjct: 125 LRLSDRKLDLAAEGLDAAFFLGLP-EDSNLKIRKITDCPRVLCAAPAYLKARGTPTSSAE 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 L D H+ + +L +F W + P G R++ + + + Q+ + G G Sbjct: 184 LKTDAHDCL---NLRYPGAPEFQW--PLHGPDGLRRVAVTGPFESDHGDVLTQWALDGHG 238 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 I L P + + + + LV ++ D + + Y K++ F +F+ Sbjct: 239 IILKPVFEISEHLASGRLVPVLPDEPPATIQMACLYMHRRHQDPKVRLFLDFM 291 >gi|325293551|ref|YP_004279415.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3] gi|325061404|gb|ADY65095.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3] Length = 373 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 4/283 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V R GS + AA +L ++Q + R I LE +G LF R GL TE Sbjct: 68 WDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIGALEEAIGFPLFIRSPHGLMPTEAAL 127 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + K G +RI+ + +G +L + ++P ++I Sbjct: 128 ALRPYAENLAATAAALMRAASGEVGKIEGTVRISASDIIGVEMLPPIIAAMQEIHPRLEI 187 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L + D+ AD AIR+ +P Q +++ R + + +A YL P +++ Sbjct: 188 ELSLSDTLEDLLRREADIAIRMTEP-QQDAIVMRYIGNFRLGFHATRDYLARAGIPKNME 246 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIA 242 EL+ H +I F P + ++D I + ++ + ++ Q ++ +GI Sbjct: 247 ELNNHRMIGFDRKTPFIRAAIQRMRSLDPEIPDIEEISFEIRADSNLAQLAMIRASAGIG 306 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285 + + + +P LV+++ P + E LK + + +A Sbjct: 307 VCQIGLARKDPRLVQVLPKTDIP-LHAWVAMHENLKTSPRCRA 348 >gi|317403819|gb|EFV84296.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 307 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA++ SF+ AA L + +S++SRQ++ LE VG++L R R + LT+ G Sbjct: 7 MELFVEVAKTHSFSRAAAALGVPKSTLSRQVAELERSVGLRLLSRTTRKVELTDAGRLYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ELQ+ PSG LR+ D G + L + EF YPD+ L Sbjct: 67 ERCQRIVAEAQIAHEELQKLVDTPSGPLRVNMPADFGTDFLAESFMEFSRRYPDVTFFLD 126 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L N D +D +I + + + S+ I R L + H YA+ YL+ EP +L Sbjct: 127 LANPDHAQRVFQTSDISIEIGE-LPDSTQIARLLGMLPAHLYASREYLEKHGEPKHPSDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +H I F W L + D+ I + VN + +LG+GI +L Sbjct: 186 TRHECIEF--RAEGAGRVTRWPLNSGDQHIQFTPGNRFSVNGVAMARRLAMLGAGITVL 242 >gi|299768287|ref|YP_003730313.1| transcriptional regulator, LysR family protein [Acinetobacter sp. DR1] gi|298698375|gb|ADI88940.1| transcriptional regulator, LysR family protein [Acinetobacter sp. DR1] Length = 300 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 20/300 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L F + +GSF AAE L + S +SR ++ LE ++ + L R R L LT++G + Sbjct: 6 EELVAFIAIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ ++L + ELQ+S +G +RI + +++ + +F YP+I+I+ Sbjct: 66 FLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYPNIEIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L +++ ID+ D A R + + SSL + + + A+P YL P ++ Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPEYLAIKGTPTQPEQ 184 Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 L++HNLI F + P + D + A + ++ +S ++ Q + G G Sbjct: 185 LEQHNLIGFTRPAYINSWPIKVGDEYFFAQAN----------IKASSGETVRQLTIRGHG 234 Query: 241 IALLPDYIV-KD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296 IA L ++ V KD L+ + ED I + +++ Y + +++ F F+ + +D Sbjct: 235 IARLSEFEVWKDIQEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLVEQLKD 294 >gi|288935805|ref|YP_003439864.1| LysR family transcriptional regulator [Klebsiella variicola At-22] gi|288890514|gb|ADC58832.1| transcriptional regulator, LysR family [Klebsiella variicola At-22] Length = 301 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D ++++ V + SF AAE L +S++SR + LE +G +L R R L++T +G + Sbjct: 5 DAMQLYVTVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++ + S +P+G+ ++ L ++ + + EFL YPD+++ Sbjct: 65 YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + DI + DC IR + S++L+ R L A+P +L P I + Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQGIDD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H + G L + +WL +++ R+ L V+ + +Q V G G+ + Sbjct: 185 LHQHRAV--GYLNHRTGRTIDWLFSLNDGDCAIRMQETLVVDDTDAYIQAGVQGLGLIRV 242 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 Y+ + + LV +E + + YP+ ++AF ++ Sbjct: 243 ASYLAQPYLQSGALVACLEQAAS-DLPLSLVYPQNRYLPPAVRAFYDW 289 >gi|326388086|ref|ZP_08209689.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207252|gb|EGD58066.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 302 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/267 (24%), Positives = 121/267 (45%), Gaps = 4/267 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF + R GS + A L +S + ++ + LE +G L R R L+LT+ G+ Sbjct: 8 IEVFVLAMRLGSLSAAGRSLGMSAAMAAKHLGQLEERLGTTLVNRTTRRLSLTQAGADYL 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L + E S G LR+ G + EF + +P + I+L Sbjct: 68 DRAERILAELREAENEASARSQVIEGLLRVNAPASFGVMHISSLAAEFGVRHPGVTIELG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L+++ +D+ + D AIR+ + + SSL RKL +H+ AAP YL+ P S+++L Sbjct: 128 LNDRYVDLLEERWDVAIRIGQ-LADSSLKARKLAAVHLALCAAPSYLEQHGTPRSVEDLK 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 HN +++ + + W D + + N+ ++++ G GI P + Sbjct: 187 HHNCLSY--TLSSRLGGNTWGFGRDGSVRVAIKGSMLANNGEALVKAACTGQGIVYGPRF 244 Query: 248 IVKDNPNLVRIME-DVITPSFTVYFCY 273 I + N ++E ++ P+ + Y Sbjct: 245 IAAEALNSGELVEFELDIPAMDMGAVY 271 >gi|307729898|ref|YP_003907122.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584433|gb|ADN57831.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 294 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 133/288 (46%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS T AAE+ +S + + + I LE+ +G +L R R +LTE G + + Sbjct: 7 MEIFVAVVEAGSLTAAAERFEISSAMVGKHIRSLESRLGTRLLTRTTRRQSLTEIGRQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + + P G L++ + G + + ++L +P++ ++L Sbjct: 67 EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFSPAMIDYLSAWPEVTLELD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ D+ + D A+R+ + SS + R L M A A+P YL P + +L Sbjct: 127 LSNRITDLVEEGFDAAVRIGH-LADSSFVARPLKPYRMRACASPAYLARAGIPRTPADLV 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPD 246 H + F +P E W + P R + N+ ++ + G G+ L P+ Sbjct: 186 HHECLGF---LPWGREG-TWRLGGEGAAQSPLRAGRFRANNGQALKVAALRGFGLVLQPE 241 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++ ++ LV ++ED + V+ YP + T KL +F +F+ Sbjct: 242 ALLAREIESGELVPVLEDHLPQGAPVHLVYPRDRRATPKLTSFIDFVM 289 >gi|264680812|ref|YP_003280722.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262211328|gb|ACY35426.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 303 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 13/255 (5%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D ++L F V G F A L L +S +SR+++ LE +G +L R R +TE G Sbjct: 5 DLNELYYFAQVVEHGGFAPAGRALGLPKSKLSRRVALLEERLGAQLLLRSTRSFAVTEVG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ + + E + + +P GK+R++ + L + + L EF+ LYP ++ Sbjct: 65 KRYYQHCRAMLTEAEAAEESVALVHSEPCGKVRMSCPVALLASRVGRMLGEFMRLYPRVE 124 Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +Q+ N+ +D+ + D A+R+R P+Q S L+ R L AAP L+ +P Sbjct: 125 LQVDETNRRVDVVGEGLDLALRVRPPPLQDSDLVLRTLADRRQCLVAAPELLQRLGQPGG 184 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 +L + G + E W+ A +PR L S L++ +L Sbjct: 185 PMDLSAWPSLDMGGV----QETHRWVLHGPDAVRAEVRHQPR---LVTQSMLALRDAALL 237 Query: 238 GSGIALLPDYIVKDN 252 G+G+ LP V+++ Sbjct: 238 GAGVVQLPSMFVREH 252 >gi|209885928|ref|YP_002289785.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] gi|209874124|gb|ACI93920.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] Length = 304 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/301 (23%), Positives = 141/301 (46%), Gaps = 20/301 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +RVF V G+ T AA +L+ S +++R I+ LE +VG +L +R R + ++E G + Sbjct: 5 DAIRVFIAVLDEGNLTKAALRLNRSPVAVTRAIAFLEADVGTELLHRTTRSVRVSEAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V + + LE + P G L I + G +L+ + +FL YP ++I+ Sbjct: 65 YAVVCRRILNDLEEANLAAAGLHSSPRGVLTITAPVLFGTRILRSVIDDFLEKYPALRIR 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 +L ++ ++++ + D A+R+ + S LI K+ ++ A+P YLK + + Sbjct: 125 YLLVDRQVNLAEEGIDVALRIGH-LPDSGLIATKIGSVRRVIAASPSYLKGRPAIRTPSD 183 Query: 186 LDKHNLITFGDL--------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 L HN I+ +L PK + + +PR+S VN+ S+++ Sbjct: 184 LAAHNCISNFELGHGEVWTFPPKPGTKAHRNVRL-----KPRLS---VNTIESLVRSAAD 235 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G G+ + Y +++ L +++ V+ P+ K++AF +++ + Sbjct: 236 GRGVVRVLSYQIEEEVRKGKLQILLKSAEPDPLPVHLVVPDGRAELSKVRAFIDYVAPRL 295 Query: 295 R 295 R Sbjct: 296 R 296 >gi|162449193|ref|YP_001611561.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159775|emb|CAN91080.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 312 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 2/205 (0%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD LR F VAR G+ + AA L ++Q ++ R+++ E +G +LF R G L+ Sbjct: 2 LDWDDLRYFLAVARHGNLSAAARVLKVTQPTVGRRVAAFERRLGARLFQRSPSGFALSAA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + G LRI + L +L L FL +P I Sbjct: 62 GESVLGHAERMEQDALAAERAAAGRDAGLRGHLRITASEWLATRVLGPLLVPFLARHPAI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + LI D + + + AD A+R + + QR++ I YA+ YL + P Sbjct: 122 SVDLIADARWLSLPRREADIALRA-AAFEHHEVFQREVARIGFGLYASEAYLADHGPPDW 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW 207 ++ + H L+T D P + D +W Sbjct: 181 GRQCEGHTLVTMND-EPPAIADLSW 204 >gi|94313019|ref|YP_586228.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356871|gb|ABF10959.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 305 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 21/297 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + LR+F V GSFT AA L S +SR+I LE +G++L R +R L+LTE G Sbjct: 6 DLNDLRLFAEVVDRGSFTAAARSLGQQTSKLSRRIRALEEALGVRLLNRTSRSLSLTETG 65 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H+ V + + + ++ +P G +RI+ + L + + + ++ P +Q Sbjct: 66 RRFHQHCLAVVAEARAAKEIVDQTRSQPQGTVRISCPVALLSSGVAETISRYVHDNPQVQ 125 Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + + N+ +D+ + D AIR+R P++ + L R+L A+P + P S Sbjct: 126 VLVDATNRRVDVIEEGLDFAIRVRPAPLEDTDLAVRQLGLSTFVLVASPELARLHAPPAS 185 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236 I+ L I E + W VD E PR++ + S+ + Sbjct: 186 IESLQDWPTIAMA----SNNERYVW-NLVDAGGKEQAFAHRPRLAT---DDIASLRIAAM 237 Query: 237 LGSGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A+LP ++I +D + L+ ++ ++ + S V+ +P G + A R+ + Sbjct: 238 FGVGVAMLPREFIEEDLQSGRLLHLLPELASTSGLVHAIFP---TRRGMVPAVRHLL 291 >gi|332288246|ref|YP_004419098.1| putative DNA-binding transcriptional regulator [Gallibacterium anatis UMN179] gi|330431142|gb|AEC16201.1| putative DNA-binding transcriptional regulator [Gallibacterium anatis UMN179] Length = 297 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 13/296 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S + +L++F+ +A+ GS AA +L ++ S+S+ + LE + + LF+R R + LTE Sbjct: 3 STTYHQLQIFHAIAQEGSINAAARKLGITSPSVSQALKLLEQSMDMPLFWRSTRRVQLTE 62 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G++L T + +L++ + PSG +RI + + +LQ +L EF YP Sbjct: 63 AGARLLTQTEPLMRELDSRLEQFLGEEHAPSGLVRITLSRFAYRLILQDHLAEFHRRYPH 122 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----C 177 I + + + + +D+ D IR I + + ++ L Y + YLK Sbjct: 123 ICLDIAVYDGTVDLVAQGFDLGIRFGDKIDENMVARQLLPAFQEGLYVSDGYLKQYGTPS 182 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 RE L L + IT G ++P +E +V+ P I C N +I Sbjct: 183 RENLHQHRLIGYRFITTGQILPLILEQGGESVSVEMPTP---IIC---NDIDTIADGVRA 236 Query: 238 GSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI L I + D + + ++ D VY YP+A + ++ A +F+ Sbjct: 237 GLGIGRLFTPIHQRLSDKNDFIPVLTDYWRNYPPVYLYYPQASQKIKRVAAVIDFL 292 >gi|264676690|ref|YP_003276596.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262207202|gb|ACY31300.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 326 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 19/253 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VAR +F AA++L L+QS++SRQI LE EVGI LF RH+R + LT G++L Sbjct: 22 LRAFLAVARHLNFRAAADELALTQSAVSRQIQSLEDEVGIPLFLRHSRAVELTGAGAQLL 81 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ T +++++ + S + I T L L+ F YPDI I++ Sbjct: 82 HAVQPALESIDATVRQIRQTVGRKS--VAITTWASFAAMWLIPRLEAFQRAYPDIDIRID 139 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + +D+ D AIR + +S L +LV + A+P L++ S Sbjct: 140 TGDAVVDLETTDVDLAIRYSAGVSDASAKALFGEELVLV-----ASPALLRSGPAVHSPA 194 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238 + ++ LI GD+ M WL + R LQ +L I+Q + G Sbjct: 195 DAARYTLIETGDV--HRMPQLEWL-SWQRWFAANGCDQLQPPRWLYFNYAHQIVQAALAG 251 Query: 239 SGIALLPDYIVKD 251 G+A+ +V D Sbjct: 252 QGLAIARLPLVAD 264 >gi|260461073|ref|ZP_05809322.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] gi|259033107|gb|EEW34369.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 301 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 17/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VAR SFT AAE+L ++Q+++S QI LE VG LF R R + LTE G +L Sbjct: 18 IRVFEAVARHLSFTKAAEELAMTQAAVSYQIKVLEERVGAPLFLRRPRQIALTEAGQRLA 77 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 SE + L + + G L + T + N L +L F + +P + ++L Sbjct: 78 PAVSEAFAILGQAYAAARGGA---DGVLCVTTVLTFASNWLAHHLGSFQIAHPSLAVRLE 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSIQ 184 ++ D + + D AIR + L KL+ +P + REP + Sbjct: 135 TSSRLTDFAREDVDLAIR-SGGGKWPGLEAYKLLDADFTPMLSPKLAASIGGVREPADLL 193 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L ++ GD+ + F + + S + +Y + + G G+A+L Sbjct: 194 RL---PILDPGDIW--WTQWFEAAGVHSHDLAKRPGSSMGAQAYEA--NAAIAGHGVAIL 246 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + K + L++ + V + YPEA +N K++AFR+++ Sbjct: 247 TRALFKAELADGRLIQPFDLVGDDGHAYWLVYPEARRNVPKIRAFRDWLL 296 >gi|169796296|ref|YP_001714089.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE] gi|215483754|ref|YP_002325979.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB307-0294] gi|301511457|ref|ZP_07236694.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB058] gi|332851623|ref|ZP_08433572.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332866512|ref|ZP_08437054.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] gi|169149223|emb|CAM87105.1| putative transcriptional regulator (LysR family) [Acinetobacter baumannii AYE] gi|213988425|gb|ACJ58724.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB307-0294] gi|332729851|gb|EGJ61185.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013150] gi|332734591|gb|EGJ65700.1| LysR substrate binding domain protein [Acinetobacter baumannii 6013113] Length = 306 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/299 (23%), Positives = 140/299 (46%), Gaps = 33/299 (11%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L++F + GSF+ AA+QL++ +++ S I LE+ + +L R R + + G Sbjct: 4 FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +++ +L+ + L+ +P G LR+ + ++ N+ +F LYPDI++ Sbjct: 64 AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPDIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R + + S+LI R L+ + A+P YL P + Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLIDMPQVICASPDYLNKHGTPEQPE 182 Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230 +L H + F ++ +D+ +W+A D N LS Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDYFLKSWIAVNDAE-----------NYVLS 231 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +Q G+G+ +P Y V + N LV+++ + P +V YP+ + + +++ F Sbjct: 232 ALQ----GAGLIQVPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVF 286 >gi|186473865|ref|YP_001861207.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196197|gb|ACC74161.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 332 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 22/297 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +RVF V +GSFT AA+ L+ + ++SR +S LE + +L R R L LT G + Sbjct: 6 NMRVFVRVVEAGSFTGAAQSLNTTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + ++ + E + +P+G LR+ + +GQ+ + + + LYP++ ++L Sbjct: 66 LKRCQLILADIDNAEEEASGAHERPAGVLRMHSFASIGQHYVLPAISRYRALYPEVAVEL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + D+ AD A+ + +S L+ L T A+P Y+ P ++ Sbjct: 126 TLSQQLPDLFEGSADVAVVGASTLPNSDLVSLLLGTTFSILCASPAYIHAHDAP---KKP 182 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243 L W T++ P G ++ +QVN S++ G GI + Sbjct: 183 TDLLHHDCLLLKTPAFPTSEW--TLEGPNGNEVLNVNGPVQVNIAESLIVAIREGMGIGI 240 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 LP Y D +LVR++ + VY YP R FI K R W Sbjct: 241 LPLYAAIDGLRTGSLVRVLPEYTLQKMNVYALYPS-----------RKFIDAKTRTW 286 >gi|332284339|ref|YP_004416250.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] gi|330428292|gb|AEC19626.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 307 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 1/172 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F + +GSFT A+E L +S++SR+++ LE E+G +L R R L LTE G + Sbjct: 9 NDLILFAYIVEAGSFTGASEHTGLPKSTLSRRLTDLENELGERLLQRSTRRLVLTEFGER 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + E Q + P G LRI+ + + L EF YPD++++ Sbjct: 69 ILEYARRLQEETEAASALAQHRQMTPQGTLRISLPPEFYELSFVKVLVEFSQQYPDVRLE 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKN 176 L L + +D+ + D AIR + S+L+ R++ T+ YA+P YL N Sbjct: 129 LDLSPRRVDLVAERFDVAIRAATQLPDDSTLVARRITTLQNSLYASPGYLHN 180 >gi|259414963|ref|ZP_05738886.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B] gi|259349414|gb|EEW61161.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B] Length = 306 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 123/254 (48%), Gaps = 2/254 (0%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V SG+FT AAE L + +S++S + LE +G++L R R + T++G + Sbjct: 6 QMNVFIQVVESGNFTRAAEALGVPRSTVSSTVQALEDRLGVQLLQRTTRVVRPTQEGLQF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + + + ++ SG+LRI + + L+ +L++F YP + +++ Sbjct: 66 ADTARGLVDAMAQAEGQFRQRPDAISGRLRIDMPSRIARRLVIPHLQDFRAQYPAVTLEI 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ ID+ + D +RL +Q S LI RK+ + M A YL P + +L Sbjct: 126 SATDRMIDLMSEGIDAVVRL-AVLQDSELICRKIGDVPMLTCAGAGYLAEFGVPETPADL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 H+L+ + +P +++ L R I S L V++ + + G G+ +P Sbjct: 185 ADHHLVNYALRMPAVSSEWDGLED-GREIAVAMQSHLCVDNAECYIAGALHGHGLIQVPV 243 Query: 247 YIVKDNPNLVRIME 260 Y V D+ R++E Sbjct: 244 YDVADDIAAGRLVE 257 >gi|190574618|ref|YP_001972463.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012540|emb|CAQ46168.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 313 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 141/298 (47%), Gaps = 24/298 (8%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +R F + SFT A+E L L +++++ I LE +G++L +R R + T +G Sbjct: 4 FTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALEQRLGVRLLHRTTRLVVPTPEGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + ++ + +++ P G LRI LG++LL +L EFL YP+I++ Sbjct: 64 AFYGRCLRLIADMDDAEAAFRDAP--PRGPLRIEVHGTLGRHLLFPHLPEFLQRYPEIEL 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + D A+R+ + S L R+L + AAP Y++ P +I+ Sbjct: 122 DVSEGDRYVDLLREGVDAALRVGT-LADSDLAARRLTMLREVTVAAPGYVQAHGLPDTIE 180 Query: 185 ELDK-HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 L++ H ++ + G LIP + L V P + ++V+ + + + G Sbjct: 181 SLEQGHQMVGYRSTATGQLIPLEFQQAGQLRYV------PLQARVRVSGADAFLGAALAG 234 Query: 239 SGIALLPDYIVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GI P Y + +P + R + E TPS + YP + +L+ F +++ Sbjct: 235 LGIIQAPRY--RMDPYIARGQLVELLPETPPTPS-PLSLVYPRNRTPSPRLRVFIDWV 289 >gi|152994971|ref|YP_001339806.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835895|gb|ABR69871.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1] Length = 317 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 134/279 (48%), Gaps = 27/279 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F VA+ SFT AA++L +S+S+IS+QI LE +G +L R+ RG+ LT G L Sbjct: 23 LLIFVEVAKKRSFTAAAKKLGMSKSAISQQIKRLEESIGHQLLIRNTRGVVLTSAGDTLL 82 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +L T +EL +PSG +++ L + ++ LK+ L +P + +++ Sbjct: 83 ARSELWSEQLSMTLMELDGEKAQPSGHFKVSVPPFLEKGIVVPVLKQLCLEFPKLTPEVL 142 Query: 128 LDNK-------DIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 + K ++D ++ D DC R + S + A+P Y+K Sbjct: 143 VTEKWQDLIEHNLDAAIFGGDIKDCGYRALSVGRVSEVF-----------CASPMYIKQY 191 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 S ++L H I K ++ F+ T +R I C +VN+ S ++ + Sbjct: 192 GAIESTEQLSSHRFIATAWHREK-LQLFDNKQTNERLISVTH--CAKVNTLTSALEAVLS 248 Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCY 273 GIALLP+++ + + N LVR++ ++ + YF + Sbjct: 249 DMGIALLPEFLAQTHLNKERLVRVLPEIRGREWHFYFLH 287 >gi|241205691|ref|YP_002976787.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859581|gb|ACS57248.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 299 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 7/293 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V + GS + AA +L L+Q +I R + LE +G +LF R GL T+ Sbjct: 7 WDFYRSFLTVLQQGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAAL 66 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + +G +R++ + + +L L YP++QI Sbjct: 67 ALKPYAETLAATAAALLRTASGQREHVAGTVRVSASEVIAVEVLPAILGPLQETYPELQI 126 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + D+ AD A+R+ +P Q ++L+ R++ I + +A YL+ P ++ Sbjct: 127 ELSASDMIEDLMNREADIAVRMAEP-QQAALVVRRIGDIPLGFHAHRRYLERHGIPQTLA 185 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H LI F A D + +S L+ + G GI L Sbjct: 186 DLTNHRLIGFDRQTAYVRMAMKRYAVPDIKF------SYRTDSNLAQLSAIRAGVGIGLC 239 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 + + NP+LV ++ D + E+LK + + +A + + +D+ Sbjct: 240 QIGLARGNPDLVHVLPDAFAIPLGTWVAMHESLKTSPRCRATFDALVKGLQDY 292 >gi|227112604|ref|ZP_03826260.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 305 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 10/295 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + GSF+ AAE+L L ++++S I LE +G++L R R + +T++G + Sbjct: 11 MRVFVRIVELGSFSRAAERLTLPRATVSNTIKQLEARLGVRLLQRTTRQVQITDEGRVYY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++E + +P GK+R+ L + ++ L EF YP + + L Sbjct: 71 ERCLQLLAEIEEIDTLFTQQKQQPVGKVRVDMPHSLAREIVVPALGEFYARYPQVTLMLS 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ I++ + DC +R + +L R L ++ A+ YL P S+ +L Sbjct: 131 ANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQITCASADYLARFGVPRSLDDLS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + L + +++ D I LQVN + + G GI P Sbjct: 190 GHQMVGYFSLRTEHRYPLEFMSG-DECITRMLPGALQVNGTDAYIASARAGLGIIQAPRR 248 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 ++ ++ LV I+ ++ P+ +Y Y G+ A R +F++ D F Sbjct: 249 GLRPFLESGELVEILPEMPPPAMPLYVMY-----APGRFLAPRIRVFIEWLDELF 298 >gi|209694745|ref|YP_002262673.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio salmonicida LFI1238] gi|208008696|emb|CAQ78884.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio salmonicida LFI1238] Length = 300 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 15/292 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F V +G T AAEQL+L++S++S+++S LE ++GIKL R R +LTE G Sbjct: 5 ESMHIFTKVVEAGGITKAAEQLNLAKSAVSKRLSELEQQLGIKLINRTTRTSSLTEAGQS 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + + +G +++A + G L L +F +P +++ Sbjct: 65 YFIKCKLILEEVNDLNCHVSAIHQELNGTIKLAVPLTFGVMHLVPALDDFAKAHPKLKLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D AIR+ + SS+L + + IH A+P YL P + Sbjct: 125 IDFSDRKVDLVEEGIDLAIRIGN-LTSSTLQAKAIAPIHHVLCASPAYLAEHGNPSTPDA 183 Query: 186 LDKHNLITFGDLIPKCME---DFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI 241 L H L+ + +E + N TV P+ C+ N +L M V G GI Sbjct: 184 LKSHQLLRYRQQPLSGVELRDNKNQAMTV--PM---ETHCIANNGDFLKAM--AVSGHGI 236 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +IV + L+ IM D S Y YPE K++ +F+ Sbjct: 237 IFMPTFIVWEELAKGTLLPIMNDYHFNSVHAYALYPETRYLPQKVRKLIDFL 288 >gi|190575828|ref|YP_001973673.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190013750|emb|CAQ47385.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 294 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 126/300 (42%), Gaps = 33/300 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR SF A +L LS S++S I LE +G+ LF+R R + LTE G +L Sbjct: 9 LAAFAAVARHRSFRRAGAELALSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAGQRLL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ E+ + P+G LRI T L L FL +PD++++L Sbjct: 69 ERLQPALGQVNDALEEMNQFRAAPAGLLRINATRAAVPTQLGPRLARFLHAHPDVRVELT 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCREPL 181 ++ +DI + D +RL + + +V + M +P YL+ P Sbjct: 129 ENDGLVDIVAEGYDAGVRLHE------FVPEDMVAVPMGPPLRGLIVGSPDYLRRRPAPQ 182 Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 ++L H I F G L E +D P L + ++++ + Sbjct: 183 HPRDLATHECIRFRFASGHLYKWQFERGGQALEIDVP------GRLTLCEQGTVVRAVLD 236 Query: 238 GSGIALLPDYIVKDNP-------NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A Y+++D +V ++ED P YP+ + G L+AF + + Sbjct: 237 GIGLA----YVLEDTARPYIESGQMVAVLEDWSEPFAGFALYYPKQRQMPGALRAFVDML 292 >gi|123443501|ref|YP_001007474.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160578|ref|YP_004297155.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122090462|emb|CAL13330.1| glycine cleavage system transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606946|emb|CBY28444.1| glycine cleavage system transcriptional activator GcvA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664808|gb|ADZ41452.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860872|emb|CBX71155.1| glycine cleavage system transcriptional activator [Yersinia enterocolitica W22703] Length = 305 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 17/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AA++L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + + L +L + AP L + Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGENGLKVPAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242 L H L+ +W+A R +G P+I+ Q + ++Q V G GIA Sbjct: 186 LANHTLL-------HDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIA 237 Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 L+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 238 LVNNVMAQSEIEAGRLVCPFSDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gi|66046304|ref|YP_236145.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] gi|63257011|gb|AAY38107.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas syringae pv. syringae B728a] Length = 303 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 26/296 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+ LR F + + S + AA L + +++SR+I+ LE + +KL R R LT Sbjct: 23 ICFDWEDLRYFVMFSTVSSLSGAARMLGVEHATVSRRIASLEKSLNVKLVDRRKRLYELT 82 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G ++ + ++ + + + V ++ I+ + L L F ++P Sbjct: 83 DEGRRVAAIGRQIEAQTQAVGRLAVAAQVVQGVEVTISAPPSVAVEKLVPQLGAFRAMHP 142 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L+ D++ +S +D IR +P++ S ++ R++ T Y A YL+ R P Sbjct: 143 GIVLRLLGDHQYSSLSSCQSDLCIRFSRPVE-SGIVARRIGTASFSFYCARFYLEQ-RPP 200 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLATV--DRP-IGEPRISCLQVNSYLSIMQYC 235 + + I + + + M D WL + DRP + E + LQ+ + + Sbjct: 201 ------EHYEFIAYDN---ELMSDSQNGWLRDIVGDRPFVLEAKTVELQIRAAET----- 246 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 G GIALLP + V+DN L R+ ++ P V+ E L+ ++A N++ Sbjct: 247 --GVGIALLPSFAVEDNNRLCRV--ELSAPLEVDVWLGVHEDLRAVASIQAAMNYV 298 >gi|330502482|ref|YP_004379351.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328916768|gb|AEB57599.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 297 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 7/244 (2%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF VA GS + AA L L+ S++SR I+ E +G +L R R +T T +G R Sbjct: 12 VFATVAEQGSLSAAARALGLTPSAVSRIIARTEQRLGTRLLLRTTRAITFTAEGEAYLRG 71 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + + + V P G+LR++ + G+ + + F YP+I + L L Sbjct: 72 ARRILADMAEVEEAIADQGV-PRGRLRVSAALGHGRMTIVPLVAAFSARYPNITVDLSLG 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +DI AD A+R + S L RK+ A+P YL+ P ++L +H Sbjct: 131 DEVVDILGGQADVAVRFGH-LPDSPLTARKVGETGQVVVASPDYLQRHGTPQQPEDLLQH 189 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248 N + F + NW D ++ ++ +S ++ Q+ +G+GIA + ++ Sbjct: 190 NCLRFN----FRRAEPNWPFVRDGQAFSLKVCGNIECSSGEALAQFARVGAGIARIGEFT 245 Query: 249 VKDN 252 V ++ Sbjct: 246 VAED 249 >gi|237654299|ref|YP_002890613.1| LysR family transcriptional regulator [Thauera sp. MZ1T] gi|237625546|gb|ACR02236.1| transcriptional regulator, LysR family [Thauera sp. MZ1T] Length = 309 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 12/287 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V GS AA L +++ +S+Q++ LE +G LF R R L LT G R Sbjct: 10 FVRVVEGGSMAAAARTLGCTRAQVSKQVAELERRLGAALFERSTRRLVLTPAGEVFLRHA 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +++++I ++ +PSG LR++ T+ G++ + L P ++I+L+L + Sbjct: 70 ARALEAVDSSEIAVRNLGERPSGTLRVSATLAFGRHFVAPLLPVVTAANPGLEIELVLTD 129 Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 + +D+ D D A+R+ +P + + + R L+ + AA Y++ P EL +H Sbjct: 130 RLVDLVDDRIDLALRMTARPPEDA--VARHLLRLRWVLCAASAYVERHGSPREPAELAQH 187 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249 I + + +A P S ++ +S + + G GIA+LP Y+ Sbjct: 188 ACIGHPAI---GAAPWGLVAAAGAPARVAVRSRVRFDSLDCTLDTVLAGHGIAILPAYLC 244 Query: 250 KD--NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290 + +R + D P+F +Y CY K++ F + + Sbjct: 245 EPALQAGSLRTVLDGWEPAFDAGRDLYACYTPGRVGVSKVRVFMDAL 291 >gi|167719855|ref|ZP_02403091.1| transcriptional regulator, LysR family protein [Burkholderia pseudomallei DM98] Length = 276 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 13/276 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D L F + +GS + AA +L LS S +S++++ LET +G++L R R TLT++G Sbjct: 5 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + H + ++E + ++E SG LRI +LG+ + + F +P + Sbjct: 65 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +Q+ L + +D+ D A+R+ + SSLI R+L + A+P YL P Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +L H I G+ W P + N + + G+GIAL Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238 Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYP 274 + V P+L R++ + + + ++ YP Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYP 272 >gi|158333823|ref|YP_001514995.1| LysR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304064|gb|ABW25681.1| transcriptional regulator, LysR family [Acaryochloris marina MBIC11017] Length = 306 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 18/295 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D + F V +G F A+ ++ LS+S +++ + LE +G++L R R + T+ G Sbjct: 4 FDSMYAFTQVVDAGGFAAASRKMGLSRSQVNKLVINLEDSLGVQLLQRTTRKVVPTKTGL 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + + + + + +P G LRI + G L L +FL + ++++ Sbjct: 64 AFYERCQAILADVAEAEESITQYQTQPKGILRINAPMSFGTEYLAPLLPDFLTQHSELKV 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L+++ ID + D +IR+ +SSLI L AAP YL+ P Sbjct: 124 ELVLNDRFIDPIEEGFDISIRISAQPIASSLIVHTLCPAPRVLCAAPDYLEQHGIPRHPD 183 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVLG 238 +L H+ + +G P +W G +I +QV N+ + Q + G Sbjct: 184 QLKHHSCLHYGYSEPL----HHWQLK-----GPDQIHRIQVQGAICSNNGEVLRQATLKG 234 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIALLP ++V ++ L ++ + +P V+ YP + + K++ F F+ Sbjct: 235 LGIALLPIFLVGEDLKGERLQVVLSNYDSPGIAVHILYPVSKHLSAKVQLFTAFL 289 >gi|148974083|ref|ZP_01811616.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] gi|145965780|gb|EDK31028.1| transcriptional regulator, LysR family protein [Vibrionales bacterium SWAT-3] Length = 309 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 1/181 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L +F V + GSFT AA + SS+S+QI LE ++G++L R R +LT G Sbjct: 5 NQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAGED 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + T + + Q +P G LRI + I GQ LQ + +F+ YPD+QI Sbjct: 65 ILAQTYVLKDTISQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQIV 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L LD+K +I D A R K ++ S+LI +K+ + A+ ++K +P + Q+ Sbjct: 125 LSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKQHGKPKTPQD 183 Query: 186 L 186 L Sbjct: 184 L 184 >gi|126737613|ref|ZP_01753343.1| Transcriptional regulator [Roseobacter sp. SK209-2-6] gi|126721006|gb|EBA17710.1| Transcriptional regulator [Roseobacter sp. SK209-2-6] Length = 296 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 21/293 (7%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D ++ +F A GSF AA +L LS S +S IS LE+++G+ L YR R L+LT +G Sbjct: 4 DLRQIAIFAKTADLGSFRKAAAELRLSPSVVSHHISQLESKLGVALLYRTTRRLSLTGEG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + E+ LQ+++ +P G +R+ L + L + + +P + Sbjct: 64 ERLLQAGRTMLEAAESGLNALQQTAAEPQGMIRVTIPSVLSPSPLAERISGYCRQFPRVV 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + L ++ D+ D+ D AIR+ P + + +R L + A+ Y+ + L+ Sbjct: 124 LDLEFSDERRDLIADHFDVAIRM-GPGRKRAANRRSLFSARRLLVASSTYMAGQDQILAP 182 Query: 184 QELDKHNLITFGD-------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236 ++L++ I F L + ED ++ + VN ++ Q Sbjct: 183 KDLERLEGIDFAPARLLNSRLRKEGAEDTSFKLKTQ----------ITVNDAQALYQLAR 232 Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 GSG+A +P+++ ++ + ++ D S V+ +P + G +++F Sbjct: 233 TGSGVAAVPEFLATEDLASGKICHLLPDWELDSLEVFAEWPASAPRGGIVRSF 285 >gi|170736254|ref|YP_001777514.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818442|gb|ACA93024.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 300 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/293 (22%), Positives = 133/293 (45%), Gaps = 19/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++++ + G+FT AA+ L L + ++++ + LE E+G++L R R +++T +G H Sbjct: 7 MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTAEGEAFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + P G+LRI + L + ++ L +F YP I++ L Sbjct: 67 ARCVQLLAGIDDAFASFPKQRAVPKGRLRIDIALALAKTIVIPALPDFQQRYPQIELVLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D+ + DC +R+ ++ SS++ R + + M A+P Y+ P ++ +L Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMVARTVGAVSMATCASPAYIARHGLPRTLDDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGI-- 241 H + F + W RP GE S L ++ +++ + G GI Sbjct: 186 THRAVNF--FTGRNRRVLEW---TFRPHGETVAVKLASSLLTDNSEALLSCGLAGLGIVH 240 Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL P D+ L+ ++ V V YP K++AF +++ Sbjct: 241 ALRPALQPSI---DSGQLIELLPGVPAVPKPVSVLYPNRAHLPDKVRAFIDWL 290 >gi|157372091|ref|YP_001480080.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gi|157323855|gb|ABV42952.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 316 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 12/263 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L V+A GSFT AAE+L +S++++S++I +ET G+ L R R + LT+ G Sbjct: 10 WTHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKEIETLAGVPLVQRTTRSVRLTDAGL 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + + +++ + + +S+ G +R+ + + L + FL P++++ Sbjct: 70 RLVEELRQPFAQIKQSFSGICDSAGPLRGSVRVTAPVAFARQQLVPRITGFLRANPEVRL 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL + ++ + ++ + D AIR + + + R L A A+ Y+K P+S Sbjct: 130 QLEVSDRLVSLTSEGFDLAIRHSDNLPDTHVAWR-LCQTETLAVASADYVKRHGMPVSPA 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP-------IGEPRISCLQVNSYLSIMQYCVL 237 +L +H + + P+ E +W R I P N+ SI Sbjct: 189 DLQRHQCLYY----PRSSESPSWSFVAKRAAEGKTEKIRVPVSGPFATNNSESIRDAAAE 244 Query: 238 GSGIALLPDYIVKDNPNLVRIME 260 G GIALLPD+ + R++E Sbjct: 245 GLGIALLPDFSAQQALADGRLIE 267 >gi|307304356|ref|ZP_07584107.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gi|307322401|ref|ZP_07601759.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306891961|gb|EFN22789.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] gi|306902558|gb|EFN33152.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 264 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 7/230 (3%) Query: 29 LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88 + S++SR++S LE +G++L +R R + LTE G + + + + +L Sbjct: 1 MPNSTLSRRVSELEKAIGLRLLHRTTRKIELTEAGQLYYERSKRIVDEARLAHEQLGAML 60 Query: 89 VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148 +PSG LR++ +DL L + EF YP I + L + +D+ + D AIR+ K Sbjct: 61 NQPSGVLRVSLPVDLATFYLTPIIGEFARHYPGITFEFDLTPRRVDLVAEPFDVAIRIGK 120 Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208 ++ S LI R + H YA+P Y++ EP + EL +H I G L + Sbjct: 121 -LEDSGLITRLIGRHSRHLYASPGYIEASGEPATPAELAEHECI--GMLRSPIWSLHQGI 177 Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRI 258 VD + +NS I V GIALLP+ IV ++ R+ Sbjct: 178 NKVDVAVR----GRFTLNSVGMIRALAVNHQGIALLPEKIVAEDVAFGRL 223 >gi|300691543|ref|YP_003752538.1| transcription regulator protein, lys-R family [Ralstonia solanacearum PSI07] gi|299078603|emb|CBJ51260.1| putative transcription regulator protein, Lys-R family [Ralstonia solanacearum PSI07] Length = 318 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 9/287 (3%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 DW+ F VA GSFT AA++L L +SS+S +S LE ++G++LF R R L LT+ G Sbjct: 5 DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L R ++ +L + + P+G LRIA + L + E + + ++ Sbjct: 65 EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQLAEVVLEVMREHAGLR 124 Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I++ + + +D ++ Y R+P+ S ++ +++ + AP L+ PL Sbjct: 125 IEVDVAPRQVDPLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVVAPALLETL-GPL- 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + LI + L ++ + A P+ P ++ ++ +Q V G G+A Sbjct: 183 ---IHPDQLIDWPCLGLSSESEWQFRAPGGEPLNLPLDFRMRTSNSELRLQAAVAGLGVA 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + ++ L ++ D +P VY +P K+K F Sbjct: 240 RITSAFAEELIATGALREVLTDFQSPPMRVYAVFPGRRLMPAKVKVF 286 >gi|270264879|ref|ZP_06193143.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041177|gb|EFA14277.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 314 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 14/264 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W L V+A GSFT AAE+L +S++++S++I +E G+ L R R + LT+ G Sbjct: 10 WTHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKEIEMLAGVPLVQRTTRSVRLTDAGL 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L + + +++ + + +SS G +R+ + + L + FL P++++ Sbjct: 70 RLVEELRQPFAQIKQSFSGICDSSGPLRGSIRVTAPVAFARQQLVPRITGFLRANPEVRV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 QL + ++ + ++ + D AIR + + + R L A A+ Y+K P S Sbjct: 130 QLEVSDRLVSLTTEGFDLAIRHSDSLPDTHVAWR-LCPTETLAVASADYIKRHGMPSSPA 188 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--------NSYLSIMQYCV 236 EL +H + + P+ E W + V R E ++ ++V N+ SI Sbjct: 189 ELQRHQCLYY----PRGSEQPGW-SFVARHSTEGKVDQVRVPVSGPFATNNSESIRDAAA 243 Query: 237 LGSGIALLPDYIVKDNPNLVRIME 260 G GIALLPD+ + R++E Sbjct: 244 EGLGIALLPDFSAQQALADGRLIE 267 >gi|152969572|ref|YP_001334681.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330010187|ref|ZP_08306702.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|150954421|gb|ABR76451.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328534603|gb|EGF61180.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 313 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AAE+L +S + +S+++S LE + + L +R R +T+TE+G + Sbjct: 8 NDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGER 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ EL + P G LRI ++ G+ ++ L L YP ++++ Sbjct: 68 IYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D IR+ I + +LI R+L H A+P +L P + + Sbjct: 128 FDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHAPPKQLSD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 187 LAA---------LP-CLV----IKERDHPFGVWQLHSKEGQHAIKVTGPLSSNHGEIVHQ 232 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V++N +LV+++ D P+ V+ Y L + K++ F+ Sbjct: 233 WCLDGQGIALRSWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 291 >gi|186473956|ref|YP_001861298.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196288|gb|ACC74252.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 308 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/287 (22%), Positives = 128/287 (44%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F V +GSF+ AA +L + Q ++S+ I+ LE + +L R RGLT T+ G + + Sbjct: 7 METFVAVVEAGSFSAAARRLQIGQPAVSKSIAQLEEHLNARLLLRSTRGLTPTDAGQRFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ++ESS SG+LR + + + L FL +P + ++++ Sbjct: 67 EHACLAIEEADRAEHSVRESSEGLSGRLRAGAPVTFARLHVIPALGAFLDQHPKLDVEIV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D++ ID+ + D A+R+ + + S + R++V+ Y + P + +L Sbjct: 127 MDDRPIDLLEEGIDVALRMGR-LDDSGMTARRVVSGRRLVVGTKKYFERHGVPRTPADLS 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246 +H I + D D +S S M+ VL G+A+ + Sbjct: 186 QHQAIVHA---MRSGGDSWAFGHADGTEAAVTVSSRVRVSAAEGMRAAVLAHMGLAVASE 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ + ++ ++ D P V+ +P T K +AF +FI Sbjct: 243 WMFAPELADGSVQAVLSDWTLPGVDVWAVFPSGRMATTKARAFVSFI 289 >gi|299529506|ref|ZP_07042943.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gi|298722369|gb|EFI63289.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 326 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 19/253 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VAR +F AA++L L+QS++SRQI LE EVGI LF RH+R + LT G++L Sbjct: 22 LRAFLAVARHLNFRAAADELALTQSAVSRQIQSLEDEVGIPLFLRHSRAVELTGAGAQLL 81 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ T +++++ + S + I T L L+ F YPDI I++ Sbjct: 82 HAVQPALESIDATVRQIRQTVGRKS--VAITTWASFAAMWLIPRLEAFQRAYPDIDIRID 139 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + +D+ D AIR + +S L +LV + A+P L++ S Sbjct: 140 TGDAVVDLETTDVDLAIRYSAGVADASAKALFGEELVLV-----ASPALLRSGPAVHSPA 194 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238 + ++ LI GD+ M WL + R LQ +L I+Q + G Sbjct: 195 DAARYTLIETGDV--HRMPQLEWL-SWQRWFAANGCDQLQPPRWLYFNYAHQIVQAALAG 251 Query: 239 SGIALLPDYIVKD 251 G+A+ +V D Sbjct: 252 QGLAIARLPLVAD 264 >gi|153832285|ref|ZP_01984952.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] gi|148871596|gb|EDL70451.1| transcriptional regulator, LysR family [Vibrio harveyi HY01] Length = 309 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 94/189 (49%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L +F AR GSF+ AA + ++ ++IS I LE ++G LF R R L LT +G Sbjct: 5 NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 T++ L+ ++ + + SG+L I D G+N+L + EF+ LYP++ I+ Sbjct: 65 FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIELYPNVSIK 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + D+ D AIR +P S+ ++ A+P Y+ + E ++ Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGANERILCASPEYVASNPELTKPED 184 Query: 186 LDKHNLITF 194 L HN + + Sbjct: 185 LHLHNCLCY 193 >gi|187930371|ref|YP_001900858.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gi|187727261|gb|ACD28426.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 306 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 12/279 (4%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS + AA+ + +S+ IS+ + LE + +L R R L+LTE G+ + E + Sbjct: 17 GSLSAAADAMGISRGVISKALVRLEARLQTRLLQRTTRRLSLTEAGAAFFEKSREGLALV 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 + + + + G LR++ LL L F YP +QI L ++++ D+ Sbjct: 77 DAAEQAVSALRDEARGTLRVSAPASFAVTLLAPLLGAFQARYPAVQIDLDMNDRYADLVA 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 D AIR+ ++ SSL+ R+L Y AP Y P S ++L HN + + + Sbjct: 137 GRIDVAIRI-GMLEDSSLVARRLANCAHAIYGAPSYFSKNGIPRSPEDLRDHNCLVYANY 195 Query: 198 IPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN-- 252 ++W+ A R + S L NS L + + G G++L P Y+V+D+ Sbjct: 196 DGP----YDWVLTDADGQRHVAHVTGSMLANNS-LVLREAARSGLGVSLGPAYLVRDDIA 250 Query: 253 -PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L ++ D ++ + + + K++AF +F+ Sbjct: 251 AGRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFL 289 >gi|160876413|ref|YP_001555729.1| LysR family transcriptional regulator [Shewanella baltica OS195] gi|160861935|gb|ABX50469.1| transcriptional regulator, LysR family [Shewanella baltica OS195] gi|315268603|gb|ADT95456.1| transcriptional regulator, LysR family [Shewanella baltica OS678] Length = 314 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 28/290 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +VF + GS AA L +S+S ++R +S +E G +L +R R L+LT G + Sbjct: 5 EAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTPAGEQ 64 Query: 66 L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + HR+ +L + +SV P G LRI+ + L +L ++++L YP Sbjct: 65 VLDYCHRLL-----ELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVRQYLASYP 119 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + + + ++ +D+ + D AIR+ + +LI R+L AAP YL Sbjct: 120 QASVNIHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178 Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VN 226 + ++L +HN +T FGD++ + + P +P+++ Q N Sbjct: 179 VHPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQAQAPNSDPKLNQGQAFNVPVNGNFSAN 238 Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273 + ++ + G GIA+ P + K D+ LV ++ + + S VY Y Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVY 288 >gi|28901542|ref|NP_801197.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308094877|ref|ZP_05892735.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308095078|ref|ZP_05903243.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308125488|ref|ZP_05775963.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] gi|28810089|dbj|BAC63030.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308089493|gb|EFO39188.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus Peru-466] gi|308091979|gb|EFO41674.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus AN-5034] gi|308111959|gb|EFO49499.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus K5030] Length = 318 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 15/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F GSF AA+ S++S+ I LE+++GI+LF R R + LTE + Sbjct: 7 LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAVRRYA 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V +L + L+ + SG L+I + G+ ++ LKEF YP I I + Sbjct: 67 NTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ +DI D +IR +Q S LI R+L I + YL P + Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPSGPDAFN 185 Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ + F G L+P M + + + + P + + VN S+ + C G G+ Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGTSEYN-----PERNFI-VNDGESMAELCAEGLGLT 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +P +I +D LV I + VY Y +++ F +FI Sbjct: 240 QIPHFIARDWLKVGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290 >gi|83950473|ref|ZP_00959206.1| hypothetical protein ISM_05225 [Roseovarius nubinhibens ISM] gi|83838372|gb|EAP77668.1| hypothetical protein ISM_05225 [Roseovarius nubinhibens ISM] Length = 301 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 19/301 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D D LR+F A + + A L L+ + S +++ LE +G +L +R R ++L+ + Sbjct: 1 MDTDALRLFVRAADLLNISAAGRDLGLAPAVASARLAKLEAALGAELLHRTTRKVSLSLE 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G+ E+ + E + L ++ +G LR A Q + L EFL YP + Sbjct: 61 GADFLPFAREILAQEEAARAALGSGGLQAAGTLRFAAPSSFAQLYIVPLLPEFLDQYPGV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ L L + D D A+R P+Q SSL RKL AAP Y+ P + Sbjct: 121 RLDLRLSDSPFDAIEGSFDLALR-NSPLQDSSLKGRKLAEDRRILCAAPSYIATHGAPAT 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQV--NSYLSIMQYCV 236 ++L H LI F D P+ + + + G+ P +S QV + LS V Sbjct: 180 PEDLADHRLIAFRDQGPRPL--------LHKDGGQSSYHPALSKGQVIIDDGLSQKLLTV 231 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 G+GI+L + V + L R++ D + ++ YP + + K++ F +F+ Sbjct: 232 QGAGISLNSLWSVHAELGSGALTRVLPDYELDDQAKLWLVYPSSHVLSPKVRVFMDFLIG 291 Query: 293 K 293 K Sbjct: 292 K 292 >gi|158422935|ref|YP_001524227.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329824|dbj|BAF87309.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 305 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 108/253 (42%), Gaps = 19/253 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F V R+GSF+ AA + ++ S+I RQI LE ++G+ LF R R LTLT+ G +LH Sbjct: 9 LATFVDVVRAGSFSGAARRRAVTPSAIVRQIDALERDLGVSLFIRSTRALTLTDAGQRLH 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L T E+ +G LRIA G+ + + +P + ++L Sbjct: 69 ERAVRHLDDLADTHAEIAAFEGSVTGTLRIACFPTFGKRYVLPVVVGLQAKHPALLVELD 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + D + D IR+ + S+LI KL + A+P YL P S +L Sbjct: 129 LTERLADPVAERLDVVIRM-GALTDSTLIATKLAPLARLLVASPAYLARAGTPTSAADLS 187 Query: 188 KHNLIT---FGDLIP-----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 H LI DL+ C F TV L+ + + + G Sbjct: 188 SHRLIDKLHGADLLGWRDVLGCPAGFGGNGTV----------ALRSDDFEAQRAAAEAGL 237 Query: 240 GIALLPDYIVKDN 252 GIA L ++V + Sbjct: 238 GIAFLSSWVVGPD 250 >gi|107026998|ref|YP_624509.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691805|ref|YP_837338.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896372|gb|ABF79536.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gi|116649805|gb|ABK10445.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 334 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 1/185 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + SFT AA+ L +S+++ +R + LE +G+ L R R L T +G + Sbjct: 8 MRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEGDAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + ++ +++ PSG LR+ + ++ L EF +PD+++ L Sbjct: 68 RRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHPDLELTLA 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D D DC+IRL + SSL+ R+L ++ A+P YL P + +L Sbjct: 128 VAGRAGDRIGDAIDCSIRL-GALPDSSLVARRLGSLERVTCASPAYLDRFGVPRTPDDLG 186 Query: 188 KHNLI 192 H + Sbjct: 187 AHRAV 191 >gi|194289613|ref|YP_002005520.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223448|emb|CAQ69453.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 315 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/297 (22%), Positives = 137/297 (46%), Gaps = 19/297 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V GSF+ A+ + +S +SR+I+ LE ++G++L R R + +T G Sbjct: 3 DLNDLSLFAQVVEHGSFSAASRATGVPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + ++ E + ++++ +P G LR++ I + Q LL + F+ P ++ Sbjct: 63 ESFYERCRAMLNEAEAAREVIEQAREQPGGTLRVSCPIAIAQILLAPAIGHFMRANPAVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I+L N+ +D+ + D A+R+R+ ++ SSL R + A+P L + P + Sbjct: 123 IELETTNRRVDVIGEGFDLALRVREVMEDSSLAVRTFGESELMLVASPSLLDSIGRPRTP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCV 236 Q LD + + D + T+ G +PR L + + + + + Sbjct: 183 QALDGMPGVG------QQPHDGKHVWTLRCKTGDSIQIAYDPR---LVTDEFALLREAAI 233 Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+A+LP + ++ L ++ P T++ +P T + F +F+ Sbjct: 234 AGVGVAMLPRMFCREALESGELELVLPQYDMPVGTLHAVFPSRKGVTPATRRFLDFL 290 >gi|209543915|ref|YP_002276144.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531592|gb|ACI51529.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 298 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 1/186 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D D++R+ + R GS + AA L L+ S +S +++ LE +G +L R R TLTE G Sbjct: 3 DADEMRIVVEIVRQGSLSAAARHLGLAPSVVSDRLARLEQRLGTRLLVRTTRRQTLTEAG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + + + + ++E+ P G LRI + G+ L + F+ +PDI+ Sbjct: 63 RIYLDEATAILAATDAMETRVRETVNAPGGMLRITAPMPFGRVRLAPFVAGFISRHPDIR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 I L L+++ +DI + D AIR P+ ++L R+L+ A+P YL P + Sbjct: 123 IHLTLEDRMVDIVGEGYDIAIRA-APVVDTALTGRRLMESRRVLVASPAYLSRHGRPETP 181 Query: 184 QELDKH 189 +L +H Sbjct: 182 ADLARH 187 >gi|209551358|ref|YP_002283275.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537114|gb|ACI57049.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 300 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 16/288 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R + + LT G Sbjct: 14 LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMRLTPAGDSYA 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R E ++ + + L+ + G L +A G L L FL P + I L+ Sbjct: 74 REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLAANPGVTINLV 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSIQE 185 D +D D AI P + + L++ +P +LK P + Sbjct: 132 TRLSPFDFRLDSIDAAIHFGHPHWPGAELA-FLMSERTVPACSPDFLKRYTISGPQDLLS 190 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 + +L T P E W A + + + + + + Q + G GIALLP Sbjct: 191 VPLLHLTT----RPDAWE--QWFA--GNGVSFESVHGMLFDQFATAAQAAIAGLGIALLP 242 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +++++ +LV ++ + Y +P + L AFR++I Sbjct: 243 TFLMQEELRRGDLVAAVDREMESRERYYLAFPPERADYAPLAAFRDWI 290 >gi|94312803|ref|YP_586012.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356655|gb|ABF10743.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] Length = 307 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 12/290 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F A +GSF+ AA +L L+ ++IS+ ++ LE +G++LF R R LTLT G + Sbjct: 7 LESFIQSAETGSFSAAARRLGLTPAAISKNVARLENHLGLRLFQRSTRRLTLTMGGEQFL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + S+ + L + KP+G LR++ + G+ L L EFL YP I Sbjct: 67 QQVSDPFSTLRDAFASAAQEDGKPAGVLRVSMGVAFGREYLVPLLGEFLARYPGIVPDWH 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +N+ +D+ D AI + + ++ R+L ++ A+P Y+K+ P +L Sbjct: 127 FENRTVDLIAGGFDAAIGGGIEL-TEGVVARELARTYVVVAASPAYMKDRAMPRHPSDLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL----SIMQYCVLGSGIAL 243 + I + +N + IGE ++ ++ L ++ + G GIAL Sbjct: 186 GFDGIVRRSASTGRLRHWN----LRNQIGEQALAEMRTRVILDDPEAMAHAAMSGLGIAL 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LP ++ LVR++ + + YP K + F +FI Sbjct: 242 LPMPHAAPWLESGALVRLLPGWYADNGPIVLYYPNRKLLPPKTRVFIDFI 291 >gi|325919076|ref|ZP_08181136.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325550460|gb|EGD21254.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 297 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 17/291 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ L F VA SF AA +L L+ SS+S IS LE +G++L +R R ++LTE G Sbjct: 6 FNDLAAFTSVAVHRSFRRAATELGLAPSSLSHLISALERNLGVRLLHRTTRSVSLTEAGE 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 +L+ +E EL P+G +RI + + LLQ + E L YP + + Sbjct: 66 RLYAKLVPALQDVEQALSELDAFRSGPTGTVRINAPEVVVRLLLQQVVPEVLARYPALSV 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 L+ + + +DI D IRL + + + A AAP YL+ P + + Sbjct: 126 DLVSEGRLVDIVAAGFDAGIRLSESVPQDMIAVPFGGQTRFIAVAAPAYLQRAGSPDTPE 185 Query: 185 ELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L +H I G L E +D P L ++ L + + G G Sbjct: 186 DLHRHACIRHRMPSGRLYRWEFERRGQEVVIDVP------GRLTLDQILMMSEAAEAGLG 239 Query: 241 IALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286 IA +P++ LVR++E P +Y YP + L+AF Sbjct: 240 IAYVPEHAAMPALARGTLVRVLEQWCPAIPGLVLY--YPGHRQIPPGLRAF 288 >gi|300691178|ref|YP_003752173.1| transcriptional regulator (lysR family) [Ralstonia solanacearum PSI07] gi|299078238|emb|CBJ50885.1| putative transcriptional regulator (LysR family) [Ralstonia solanacearum PSI07] Length = 310 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 15/299 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F ++AR GS AA +L L+ + ++++S +E+ +G++L R R ++LT +G Sbjct: 8 ELEFFTLIARHGSLAAAARELDLTPPAATKRLSQMESRLGVRLVNRTTRSISLTNEGETY 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + L + + S +P G LR+ T+ G+ + + EF Y +++QL Sbjct: 68 LAYAQRILADLREMESVVASSGSEPRGLLRVNATLGFGRTTIAPLVSEFAKRYAQVEVQL 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ D AIR + L R++++ A+P YL+ P S+ +L Sbjct: 128 EVTDRPIDLVESGVDLAIRF-GTLPDKRLSARRIMSNRRFLCASPVYLEKFGTPKSLSDL 186 Query: 187 DKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243 H I I + +D + W D +++ L N ++ + + G GI + Sbjct: 187 HHHRCI-----IHRQNDDTHAIWRFEHDGHHESVKVAGALSSNDGDIVLGWALDGHGILI 241 Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARD 296 ++ + ++ L ++ PS ++ YP+ T + +AF +F+ F + RD Sbjct: 242 RSEWDLAKYLESGRLRVVLPQFKLPSADLFVYYPQRRNQTARARAFIDFLVEKFQRLRD 300 >gi|227328971|ref|ZP_03832995.1| transcriptional regulator protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 214 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 89/191 (46%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ VF VA GSFT AA +L LSQS++S + LE + +L R R L+LT+ G Sbjct: 5 DFSDFAVFIAVAEEGSFTRAAAKLGLSQSALSYTVRMLEQRLETRLLSRTTRSLSLTDAG 64 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +L + + L KP+G +RI T + +L L FL YPDI Sbjct: 65 ERLLHALKPAFEHINHEIAALSSRQGKPAGTIRITTFRHAARTVLLPALTPFLHDYPDIV 124 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ ++ DI D IRL + +Q + R I M + Y + P + Sbjct: 125 VEISVNEGLTDIVAGRFDAGIRLGEQVQKDMIAVRISPDIRMAVVGSASYFAARKVPNTP 184 Query: 184 QELDKHNLITF 194 +EL +H +++ Sbjct: 185 RELSEHRCVSY 195 >gi|332999820|gb|EGK19404.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-272] gi|333015688|gb|EGK35027.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-227] Length = 310 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVVLTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P +QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQLLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gi|239503567|ref|ZP_04662877.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter baumannii AB900] Length = 306 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 33/299 (11%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L++F + GSF+ AA+QL++ +++ S I LE + +L R R + + G Sbjct: 4 FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSLDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + +++ +L+ + L+ +P G LR+ + ++ N+ +F LYPDI++ Sbjct: 64 AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R + + S+LI R LV + A+P YL P + Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPEQPE 182 Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230 +L H + F ++ +D+ +W+A D N LS Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDYFLKSWIAVNDAE-----------NYVLS 231 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 +Q G+G+ +P Y V + N LV+++ + P +V YP+ + + +++ F Sbjct: 232 ALQ----GAGLIQVPHYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVF 286 >gi|116695872|ref|YP_841448.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113530371|emb|CAJ96718.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 309 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 128/286 (44%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA + SF AA QL ++ S +S ++ LE + LF+R R + L+E G + Sbjct: 7 IEAFVRVADTLSFAEAARQLGVTNSVVSHRVQQLEKYINAPLFHRSTRHVRLSEVGETYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R ++V L ++++ P+G+LRI L F YPDI++ ++ Sbjct: 67 RQCADVVANLADLTDQMRDLRATPAGRLRIQVLPGFAIGHFADILAGFSQQYPDIELDVV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++++ ID + D A ++ P Q+ SLI R+L T+ AP +++ +P +L Sbjct: 127 VNDRVIDPIEEGFDVAFQIFAP-QNDSLIARRLFTLRRIFCVAPEFIERWGKPERPADLI 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 + + + F+ A PR ++ NS + Y V G+ + LP Sbjct: 186 CSKVALYSAYPTRNKWTFSRDAESVEIDLAPR---MRTNSVHLLRDYAVSGAAVVCLPTL 242 Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ LV ++ D SF YP + K++ +++ Sbjct: 243 VASEDLLAGRLVPVLHDYALSSFEFAAVYPATQRQALKVRVLVDYL 288 >gi|116691600|ref|YP_837133.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649600|gb|ABK10240.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 296 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 128/300 (42%), Gaps = 23/300 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 12 NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + +L VK L I+TT L L +F +PD ++ Sbjct: 72 YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTEAHPDYDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSI 183 +I D + D D AIR KP L L + + A +P L P L+ Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVCAVCSPSVLSPPAAPRALAG 187 Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q L D H DL P+ +LA + P+ L+ N + V G GI Sbjct: 188 QVLLHDAH------DLWPE------FLAAMPAPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235 Query: 242 ALLPDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 AL + +V+ + R+ + D P S Y YP ++ + R ++ A D + Sbjct: 236 ALATEPLVERDIAAGRLCKPFDFAFPLSMGFYLVYPAERRDDDAIAVMREWMIQAASDGR 295 >gi|257487827|ref|ZP_05641868.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 230 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 97/190 (51%), Gaps = 1/190 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 ++ +RVF + G F AAE LH+ ++S++ I LE +G++L R R ++ T G Sbjct: 4 FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + L+ + + P G LR+ + LG+ ++ L EF YP I++ Sbjct: 64 AYYQRCVSLLADLDDAEASFSAAGAVPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + +L+ R L ++ A+ YL+ PL++ Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPLNLP 182 Query: 185 ELDKHNLITF 194 +L +H +I + Sbjct: 183 DLAQHQVIEY 192 >gi|254503624|ref|ZP_05115775.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222439695|gb|EEE46374.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 305 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 10/295 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF V GS T L ++ + S++I LE +G +LF R R LT TE G Sbjct: 5 ESLRVFTRVVELGSITAGGRDLRMTPAVASKRIKELEKHLGARLFNRTTRSLTPTEVGKV 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + S P G LRI + G+ ++ + +F+ +P ++ Sbjct: 65 FYEHAVKALESINDAEAAVASFSDMPRGVLRITAPLGAGRRIISPLVPKFVEQFPATEVH 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L ++ +DI D D A + P + S+L RK+ AAP YL+ P S + Sbjct: 125 MRLSDRKVDIMSDGLDVAFFIGTP-EDSNLKLRKIADCPRVLCAAPGYLEKHGTPQSPDD 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L +HN + P E + L T D P V+ + + + G GI Sbjct: 184 LLTCEHNCLLL--RYPHSPEYYWVLETKDGPRKLQVSGKFDVDHSDVLTDWAISGYGIVN 241 Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFIFLKA 294 P + V ++ +LV I+ D P T++ C YP K++ F +F+ A Sbjct: 242 KPRFDVAEHLRKGDLVEILIDTPPPP-TIFGCLYPHRRLQDPKIRHFVDFVIKHA 295 >gi|154251278|ref|YP_001412102.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155228|gb|ABS62445.1| transcriptional regulator, LysR family [Parvibaculum lavamentivorans DS-1] Length = 309 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 1/190 (0%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W+ R F V R GS + AA QL L+Q ++ R + LE +G+ LF R GL TE Sbjct: 8 WELYRSFLAVVREGSLSGAARQLGLTQPTVGRHVDALEEALGVGLFTRSQGGLAPTEAAL 67 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + E + + + G +RI + +G +L L F +P I I Sbjct: 68 SLVPHAEAMSMAAEALRRAASGEAEEDRGTVRITASEMIGTEVLPSILAAFCEKHPRIAI 127 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L+L N+ D+ AD AIR+ +P Q +SL+ +K TI + +A + ++ P S++ Sbjct: 128 ELVLSNRTDDLIRRDADIAIRMVRPTQ-TSLVAKKCGTIGLGLHAHKNLIQRFGMPQSVE 186 Query: 185 ELDKHNLITF 194 +L ++ +I F Sbjct: 187 DLTQYPIIGF 196 >gi|307129411|ref|YP_003881427.1| putative transcription regulator protein [Dickeya dadantii 3937] gi|306526940|gb|ADM96870.1| Probable transcription regulator protein [Dickeya dadantii 3937] Length = 300 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/272 (23%), Positives = 127/272 (46%), Gaps = 5/272 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF + + SF+ AAE+L L ++++S+ + LE +G++L R R + +T++G + Sbjct: 7 MRVFVRIVEAESFSRAAEKLGLPRATVSQTLKRLELRLGVRLLQRTTRQVQVTDEGMLYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++E T +PSG++RI L + ++ +L EF YP I + L Sbjct: 67 QRCVQLLAEIEETDALFSRQRQQPSGRVRIDMPHSLARQVVIPSLPEFYRRYPQISLVLS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ I++ + DC +R + + SL+ R L ++ A+ Y P +++ L Sbjct: 127 ANDSAINVMREGVDCVLRAWQ-VDDDSLVARSLPSLPQVTCASAAYCAEFGVPDTLEALM 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H ++ + L ++ + I S +++N + + C G GI P Y Sbjct: 186 SHRMVGYFSLRTSHRYPLEFMQQ-GQIITRTLPSLVEINGADAYIAACQAGMGIIQAPRY 244 Query: 248 ---IVKDNPNLVRIMEDVITPSFTVYFCYPEA 276 + + LV I+ + P +Y YP Sbjct: 245 GLVPLLSSGELVEILPQLPPPDMPLYVMYPSG 276 >gi|167550666|ref|ZP_02344423.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|198242490|ref|YP_002214090.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937006|gb|ACH74339.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205324381|gb|EDZ12220.1| transcriptional regulator, LysR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 307 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++A + SFT AA QLH+S S++S+ + LE E+G+KL R R + LTE G Sbjct: 9 LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++S P G LR+ LLQ NL F+ YPDI++ + Sbjct: 69 ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR +Q + + A+P YL PL QEL Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + + ++ R P + L VN + G+G+ + + Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 V + + L ++E+ + + Y YP KL+ F ++ KA Sbjct: 248 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297 >gi|145598966|ref|YP_001163042.1| DNA-binding transcriptional activator GcvA [Yersinia pestis Pestoides F] gi|145210662|gb|ABP40069.1| glycine cleavage system transcriptional activator [Yersinia pestis Pestoides F] Length = 305 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 128/295 (43%), Gaps = 17/295 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F AR SFT AAE+L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + E++ + +LQ S K G L ++ L L F YP I ++ Sbjct: 69 YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + +++ D D D AI + S L L + AP L + Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWSGLRTECLYAEFLLPVCAPSLLTGENGLKVPSD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242 L H L+ +WLA R +G P+I+ Q + ++Q V G GIA Sbjct: 186 LANHTLL-------HDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIA 237 Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 L+ + + + R++ DV+ Y ++ GK+ AFR +I +A Sbjct: 238 LVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gi|152986508|ref|YP_001345452.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961666|gb|ABR83691.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 306 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 1/186 (0%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 RVF V SGS T AAE+L +S++ +SR ++ LE VG +L +R R L+LT+ G++L Sbjct: 8 RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128 E+ ++ Q Q P G LRI +++ Q L F+ +P I L + Sbjct: 68 QCREMLAVADSMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERFPGTAIDLQV 127 Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188 +++ I++ + D A+R+ + +LI R+L AAP YL+ P ++L Sbjct: 128 NSQVINLVEERIDLALRITNQLD-PNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186 Query: 189 HNLITF 194 HN +T+ Sbjct: 187 HNCLTY 192 >gi|28870375|ref|NP_792994.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853622|gb|AAO56689.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 302 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 18/291 (6%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 SFDW+ LR F A S + AA++ + +++SR+I+ LE + +KL R R LT+ Sbjct: 23 SFDWEDLRYFLTFAAVKSLSGAAKKSGVEHATVSRRIASLEKSLNVKLVDRRKRLYELTD 82 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G KL + + + E + P+ ++ I+ + L L F ++P Sbjct: 83 DGRKLAVIGRRIEEQAEAIGRLAVAAQDAPATEVTISAPSSVAIEKLVPQLGAFRAMHPG 142 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I ++L+ D++ +S +D IR +P++ + ++ R++ T Y + YL+ Sbjct: 143 IVLRLLGDHQYSSLSSCQSDLCIRFSRPVE-NGIVARRIGTASFSFYCSNFYLE------ 195 Query: 182 SIQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Q L +H I + + ++ + R I R L+ + ++ G G Sbjct: 196 --QRLAEHYEFIGYDSEVMTASQN-----VLLRTIVGARPFVLEAKTVELQIRAAEAGVG 248 Query: 241 IALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 IALLPD+ V+ NP L R+ ++ P V+ E L++ ++A N++ Sbjct: 249 IALLPDFAVEQNPRLCRL--ELSRPLEVDVWLGVHEDLRSVASIQAAMNYV 297 >gi|332678600|gb|AEE87729.1| Transcriptional regulator [Francisella cf. novicida Fx1] Length = 296 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62 ++D + +F + G+FT A+QL++SQS++SR+I LE + KL R++RG + +T + Sbjct: 2 NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ S + + T + +S + G LR+ NL+ L F YP++ Sbjct: 62 GQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ +D+ D D AI +KP ++ I + L+ YA+ Y++ P + Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKAKNKLYASKKYIQEKGVPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221 I+EL+ H+++ F D KC + +D E IS Sbjct: 181 IKELENHSIVGFIDN-DKCQNALVGFSELDNSSLEVNIS 218 >gi|260549546|ref|ZP_05823764.1| LysR-family transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407339|gb|EEX00814.1| LysR-family transcriptional regulator [Acinetobacter sp. RUH2624] Length = 303 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 1/193 (0%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D++ L+VF V SF A++ L + S++SR IS LE ++ ++L R R + LT+ Sbjct: 4 ALDFNTLKVFIAVVEKESFVGASKLLEMPTSNVSRCISQLEEKLDLQLIERSTRHMKLTQ 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L+ + LE T+ EL ++ G LRI ++G LL + EF YPD Sbjct: 64 AGQLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIAEFACQYPD 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I + + + D D AI + R + +S I R LVTI AAP ++ P Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIISRGQMDNSDYIARHLVTIPCTIVAAPSLIQRYGTP 183 Query: 181 LSIQELDKHNLIT 193 I++ ++ IT Sbjct: 184 TRIEQFEELPCIT 196 >gi|62178706|ref|YP_215123.1| lysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205351478|ref|YP_002225279.1| lysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855652|ref|YP_002242303.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224581982|ref|YP_002635780.1| LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126339|gb|AAX64042.1| putative lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205271259|emb|CAR36047.1| putative lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707455|emb|CAR31729.1| putative lysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466509|gb|ACN44339.1| putative LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713159|gb|EFZ04730.1| lysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326626505|gb|EGE32848.1| lysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 313 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F ++A + SFT AA QLH+S S++S+ + LE E+G+KL R R + LTE G Sbjct: 15 LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++S P G LR+ LLQ NL F+ YPDI++ + Sbjct: 75 ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +++ +D+ + D IR +Q + + A+P YL PL QEL Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 194 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + + ++ R P + L VN + G+G+ + + Sbjct: 195 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 253 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 V + + L ++E+ + + Y YP KL+ F ++ KA Sbjct: 254 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303 >gi|330503049|ref|YP_004379918.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917335|gb|AEB58166.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 316 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 135/309 (43%), Gaps = 38/309 (12%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A +GSF AA +L LS +++ + ++ LE+ +G++LF R R LTLTE G + Sbjct: 10 FVRTAEAGSFAEAARRLGLSPAAVGKNVARLESSLGVRLFLRSTRRLTLTEAGERFLAEV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S ++ L S +P+G L+++ + G++ + +L +FL YP I DN Sbjct: 70 SGGLANIQGAVANLASSQGQPAGTLKVSMGVAFGRDYILPHLTDFLARYPAITPDWHFDN 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ D AI + + I R+L H AAP YL ++L +H+ Sbjct: 130 RAVDLIGGGFDAAIGGGFELPPGA-IARQLAPAHRVLLAAPVYLAKHAPITRPEDLTQHD 188 Query: 191 LITFGDLIPKCMEDFNW-LATVD-----------RPIGEPRISC--------LQVNSYLS 230 I P+ +W L T D + +P +C + + S + Sbjct: 189 GILIRS--PQTGRVRSWPLRTRDDQQATLELKQRMTMNDPEAACHAALQGLGITLVSTVH 246 Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + Y GS +LPD+ V T S ++YF + L K + F +FI Sbjct: 247 ALPYLQRGSMQWVLPDWYVD-------------TGSLSLYFSAQKLLP--AKTRVFIDFI 291 Query: 291 FLKARDWKF 299 + R+ ++ Sbjct: 292 VERFREHRW 300 >gi|149927560|ref|ZP_01915813.1| LysR-family transcriptional regulator [Limnobacter sp. MED105] gi|149823614|gb|EDM82842.1| LysR-family transcriptional regulator [Limnobacter sp. MED105] Length = 304 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 13/296 (4%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D + L F V F+ AA L + +S ISR+I+ LE + +L YR R L +TE Sbjct: 1 MDLNDLYYFAKVVEHQGFSAAARALGIPKSKISRRIAELEKRLNTQLLYRSTRKLHITEI 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G ++ + + E+ Q ++ + +P G +R+ I L + L EFL+ +P + Sbjct: 61 GKTYYQHCKAMLIEAESAQEVIEHNHAEPRGLIRMTCPIALLHAHIGDMLAEFLVKHPQV 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + + N+ +D+ + D AIR+R P+ SS L+ + L + A+P + P Sbjct: 121 TVHMEASNRRVDVVAEGVDLAIRVRPLPLDSSDLVLKVLSDRGLCLVASPCLINKMGAPK 180 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237 ++L + G + F W T GE P L +++ + Sbjct: 181 HPKDLIHWPSLGLGQTQGQVQTAFEWCLT--HASGERIVIPHSPRLVTTDMVALRASAMA 238 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G G+ LP+ +V N LV+++ D ++ +P G L A R I Sbjct: 239 GVGVVQLPNLMVPKQVANGELVKLLPDWSPRREIIHVVFP---SRRGMLPAVRALI 291 >gi|221067396|ref|ZP_03543501.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gi|220712419|gb|EED67787.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 308 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 142/302 (47%), Gaps = 27/302 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA SG F+ AA +L ++ SS++R I GLE +G L R R +TLT+ G+ Sbjct: 7 LRAFLDVAESGGFSKAARRLGVATSSVTRLIDGLEESLGTALLTRTTRRVTLTDAGAAYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S V LE + ++ + G LR++ + L ++ FL P + + L+ Sbjct: 67 EQVSRVLSDLEEADGSVSDTGTEAVGPLRVSLPATFARLCLAPHIASFLRENPRVSLDLV 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L + +D+ + D A+R+ P LI R L + A+ YL+ PL +EL Sbjct: 127 LSDAYVDLVSERIDVAVRIGTPALQPQLIVRNLAEHRRYVVASHAYLQRHGTPLIPEELS 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLS-----IMQYCVL-G 238 KH +CM F++ R R LQ V L+ I++ VL G Sbjct: 187 KH----------ECMR-FSYQPGPQRWSFRHRDGQLQHVEVQGRLAVNNSDILREAVLDG 235 Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV-ITP---SFTVYFCYPEALKNTGKLKAFRNFIF 291 GI+LL +++++++ L R+ ED I P S VY Y + + K++ F +F+ Sbjct: 236 GGISLLAEWLIREDVRVGRLRRLFEDYEINPQEHSVCVYAAYLPNRRYSKKVQVFLDFLQ 295 Query: 292 LK 293 ++ Sbjct: 296 MQ 297 >gi|120612464|ref|YP_972142.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590928|gb|ABM34368.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 314 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 126/261 (48%), Gaps = 8/261 (3%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + ++ GSFT AA +L +S+S++S ++S LE G+ L R R + LT+ G Sbjct: 10 WSHVHWLGILDAEGSFTGAAHRLGVSKSAVSHRVSELEQAAGVALVRRTTRTVRLTDAGR 69 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L T E + +E + +++ + +P+G LR+ + G+ + + FL YP +++ Sbjct: 70 HLVDSTRESFASIERSFANIRDLAQEPNGVLRVTVPVAFGRQHIVPRIPGFLRQYPQVRV 129 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L L + +S+D D AIR + + + + L A+ YL+ C P + Sbjct: 130 ELELSDGIRSLSLDGFDLAIRHVESVPDTH-VAWPLCPTETVLVASRAYLEACGVPGTPH 188 Query: 185 ELDKHNLITF--GDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L +HN + + G +P E A R + P N+ ++ + G+GI Sbjct: 189 DLARHNCLHYLRGASVPSWSFERTGHRADAPR-LSIPIAGTFAANNSEALRTLAIAGAGI 247 Query: 242 ALLPDYIVK---DNPNLVRIM 259 A+LPD+ V N LVR++ Sbjct: 248 AMLPDFSVSGEIGNGELVRVL 268 >gi|212637013|ref|YP_002313538.1| LysR family transcriptional regulator [Shewanella piezotolerans WP3] gi|212558497|gb|ACJ30951.1| Transcriptional regulator, LysR family [Shewanella piezotolerans WP3] Length = 302 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 13/292 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F +VA SFT A+ +L++ S++S+ +S LE+ +L YR R + LT +G Sbjct: 15 MRSFVIVAERESFTEASRELNIVASAVSKHVSDLESHFSSQLLYRTTRAMHLTSEGEYYL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ ++++ + E + +G L I+ N EF+ +PD++I + Sbjct: 75 EQFKEIIARIDSLENIASERLQQVAGNLTISAPQGSAALGYLHNTSEFIKRHPDVRISWL 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 N+ +++ + D +IR+ + + S+LI R+ +I +H A+P Y+K P +EL Sbjct: 135 FLNRFVNMVEEGVDLSIRIGE-LADSNLIARQYTSIKVHFVASPDYIKLHGLPKHPKELS 193 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244 +H + L + W + E I+ +Q N ++ G GIA L Sbjct: 194 QHQCV----LDSSNRQPGRW--RYNEAAKESTITVKGYVQANDGEVAARFAADGHGIAYL 247 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 P ++++ D+ L I+ED V +P L+A F+ K Sbjct: 248 PSFLMQQYLDSGELCPILEDYEFDETPVSLVFPANRLMNPALRALIEFLIEK 299 >gi|330969845|gb|EGH69911.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 303 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 26/296 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FDW+ LR F + + S + AA L + +++SR+I+ LE + +KL R R LT Sbjct: 23 ICFDWEDLRYFVMFSTVSSLSGAARMLGVEHATVSRRIASLEKSLNVKLVDRRKRLYELT 82 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G ++ + ++ + + + V ++ I+ + L L F ++P Sbjct: 83 DEGRRVAAIGRQIEAQTQAVGRLAVAAQVVQGVEVTISAPPSVAVEKLVPQLGAFRAMHP 142 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L+ D++ +S +D IR +P++ S ++ R++ T Y A YL+ R P Sbjct: 143 GIVLRLLGDHQYSSLSSCQSDLCIRFSRPVE-SGIVARRIGTASFSFYCARFYLEQ-RPP 200 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLATV--DRP-IGEPRISCLQVNSYLSIMQYC 235 + + I + + + M D WL + DRP + E + LQ+ + + Sbjct: 201 ------EHYEFIAYDN---ELMSDSQNGWLRDIVGDRPFVLEAKTVELQIRAAET----- 246 Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290 G GIALLP + V+DN L R+ ++ P V+ E L+ ++A N++ Sbjct: 247 --GVGIALLPSFAVEDNNRLCRV--ELSAPLEVDVWLGVHEDLRAVASIQAAMNYV 298 >gi|289624194|ref|ZP_06457148.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647243|ref|ZP_06478586.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298486161|ref|ZP_07004224.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159168|gb|EFI00226.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868084|gb|EGH02793.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330985532|gb|EGH83635.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 306 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F+++A+ GS A +L ++ +IS+++S LE +G +L R R ++LT +G Sbjct: 7 LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGELYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ + + SS P G +R+ ++ G+ + L F YP++QIQL Sbjct: 67 SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D IR + ++ RK+ + A+P YL+ P + EL Sbjct: 127 ISDHPLDLATHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN I + P + F+ + C N + + + G GI L + Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + L ++ED VY YP+ L + +++ +F+ Sbjct: 243 WDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFL 289 >gi|313202357|ref|YP_004041015.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gi|312441673|gb|ADQ85779.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 315 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 4/194 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A+ GS + AA L +S + S + LE+E+G+ LF R R L LT +G +L Sbjct: 15 LELFITTAQYGSLSAAARSLEISPAVASAALKRLESELGVLLFVRTTRSLRLTAEGERLL 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++L EL G+L ++ DLG+N++ L EF +PD+ +++ Sbjct: 75 ARSQPLINELRDLADELVAGHSLIRGELSLSLPSDLGRNVILPWLDEFQQQHPDLHLRVQ 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186 L ++ D+ + D AIR +P SS + LVT + AAP YL P S EL Sbjct: 135 LSDRIADVMREPVDVAIRYGQPPDSSQ-VALPLVTDNRRVLCAAPQYLTTHSTPSSPAEL 193 Query: 187 DKHNLITF--GDLI 198 +HN + F GD + Sbjct: 194 SRHNCLCFRVGDAL 207 >gi|71734169|ref|YP_273972.1| LysR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554722|gb|AAZ33933.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 302 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 30/296 (10%) Query: 6 DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+L+ AR SGS + AA+ S +S+ R ++ LE+ +G++L R R + LT++ Sbjct: 2 DRLKAMANFARIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + R T + + + L G LR+ ++ GQ + + FL + DI Sbjct: 62 GEEYLRWTRRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLSEHQDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++L L+++ + + + D A+R+ + S+++ R++ + + A+P YL+ + Sbjct: 122 NVELNLNDQIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLDT 180 Query: 183 IQELDKHNLIT---------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 + L +H IT F + ++D PR+ C QV + Sbjct: 181 PKSLPEHACITLASHGRQWYFRHQGKELIQDIT-----------PRLVCNQVRAA---SL 226 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 C+ G G+ L Y V D + L+R++ + T + YP AL+ + ++KAF Sbjct: 227 ACIQGLGVTRLIHYQVADELADGRLIRVLNNFETADLPIQLVYPHALQLSPRVKAF 282 >gi|126464318|ref|YP_001045431.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126106129|gb|ABN78659.1| transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] Length = 307 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 127/282 (45%), Gaps = 23/282 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D++R F VA GS + A + + QSS++R ++ LE VG+ L R R +TLTE+G + Sbjct: 9 DRMRTFVRVAERGSLSAVARDMRIGQSSVTRHLNELERAVGVALLSRTTRRVTLTEEGHR 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ + E + + SG +R++ T LG + + F +P+I++ Sbjct: 69 YYLQAVQILRLVAEASDEARRAGAASSGLVRLSCTAALGVRHIGRLIHRFQDRHPEIEVD 128 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ ID+ + D AIRL + S L R L A+P YL P + + Sbjct: 129 LGLTDERIDLVREGVDLAIRL-GTLGDSRLKLRSLGRSRRILVASPGYLDRRGRPQTPAD 187 Query: 186 LDKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237 L++H I FN T++ P G R+ L+V+ L+ + Sbjct: 188 LERHEGIRM----------FNIAGSERLTLEGPDGTTRVVPFGGRLRVDHGLAAREAYRA 237 Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTV-YFCYPE 275 G G+ ++V D + L RI+ D PS + PE Sbjct: 238 GRGLGPAHLWLVDDLLTDGQLERILPDHALPSVPLSLLIAPE 279 >gi|170751151|ref|YP_001757411.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657673|gb|ACB26728.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 286 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 121/281 (43%), Gaps = 31/281 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 +W +R+F +ARSG+ AA L S ++ R++ LE +G LF R A GL LTE+ Sbjct: 1 MEWSDVRIFLAIARSGTLGGAARSLQTSHPTVGRRLRALEQAIGHTLFQRTADGLVLTEE 60 Query: 63 GSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + ++ + L QE ++K G LRI++ G +L L +F YP Sbjct: 61 GHGIIALAEQMEEGALAMERRLAGQEQNLK--GSLRISSADWFGAYVLPPILADFSRAYP 118 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-----PHYLK 175 + ++++ + +++ AD A R+ P ++ ++QR+L + Y A P Y Sbjct: 119 HVDVEILTGTRLFNLAQREADLAFRI-VPFNTADVVQRRLFRLEYGVYIAEESPDPRYGD 177 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV---DRPIGEPRISCLQVNSYLSIM 232 L E + D WL RP+ L+ N+ Sbjct: 178 GTGFRLITHETSTGHF-----------PDIAWLIETFPNARPV-------LRSNNRNVQG 219 Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273 + C G GIA+LP + P + R+ P+ ++ Y Sbjct: 220 RMCRQGVGIAVLPRVVGTQIPGIRRLDLPTQPPARDIWVGY 260 >gi|325168821|ref|YP_004280611.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064544|gb|ADY68233.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 296 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/299 (20%), Positives = 133/299 (44%), Gaps = 18/299 (6%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W +R+F VA + SF A Q+H+S +++R ++ LE +G +LF R R + +TE G+ Sbjct: 4 WQAMRIFVKVAETESFADTARQMHMSAPAVTRSVAALEDIIGARLFVRTTRSVKMTEAGA 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + ++ + + S P+G L + ++ GQ + + FL +P ++ Sbjct: 64 RYFEDCRKILSDIAEAEAAAGGSYATPTGTLSVTASVMFGQMYVLPVVTGFLDAFPTMKA 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + + ++ ++I + D A+R+ + S L K+ ++ +P Y P + Sbjct: 124 RTLFIDRPVNIVDEGIDVAVRIGH-LPDSGLSAIKVGSVRRVVCGSPAYFDRHGIPTTPS 182 Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H + T P+ ++ T+D + LQ N+ + + G G+ Sbjct: 183 DLRDHRIAASTSAWASPEWRFSDDFRVTID--------AALQCNTNEAAITSAREGWGLT 234 Query: 243 LLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296 + +Y + P+L+ ++ + P ++ +PE K++AF + + R+ Sbjct: 235 RVLNYQI--GPDLMAGDLQIVLSEFEEPPLPIHIMHPEGRNAPAKVRAFVDMAVARLRE 291 >gi|255318048|ref|ZP_05359293.1| LysR substrate binding domain protein [Acinetobacter radioresistens SK82] gi|255304871|gb|EET84043.1| LysR substrate binding domain protein [Acinetobacter radioresistens SK82] Length = 302 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 23/283 (8%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M +++L+VF + SGS A+EQL S +SR + LE+++ + L R R L+LT Sbjct: 1 MKSTFEELQVFVSIVDSGSIVKASEQLGQLTSGLSRILQRLESKLNVTLLERTTRKLSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G ++ ++L + L +S + SGK+RI + +++ +++F+ YP Sbjct: 61 QEGQLFLERARKIINELNDAEELLLKSDHEVSGKIRIDSATPFVLHVIAPLMQKFMQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I+I+L ++ ID+ D AIR + + SSL R L ++ A+P YL+ P Sbjct: 121 YIEIELNSHDQIIDLLEHRTDVAIRFGQ-LNDSSLHARLLTQSRLYIVASPAYLEQYGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYC 235 + EL +H LI F PK + + N T PI + ++ ++ Q Sbjct: 180 QTAGELLQHQLIGFSS--PKHLNTWPLKLGNEYFTATAPI--------RASNGETVRQLA 229 Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYF 271 +L GI L +++V + LV + ED I P VY+ Sbjct: 230 LLHHGITCLSEFLVGQDLAQNRLVALFEDQIELHYQPIHAVYY 272 >gi|171315644|ref|ZP_02904878.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gi|171099176|gb|EDT43949.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 290 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 23/291 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F VAR SFT AAEQL L+Q ++SRQI LE G LF RHA+GLTLT +G +L Sbjct: 10 LQIFSTVARHRSFTRAAEQLCLTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V E + +++ ++L + L++ T + + + F +PD+ +Q+ Sbjct: 70 PVVDESFARIDDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185 + +D S + D A+ + + + L + AP + PL ++ + Sbjct: 125 TAWQHVVDFSTEPFDAAV-VYGTSPGAGVFALPLFDERLTPVCAPELRQAV--PLDAVGD 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGIA 242 L +H L+ + +W A +D GE + + ++ ++ + G G+A Sbjct: 182 LARHTLLH------PTRDHRDWRAWLDH-AGERAVDAERGPTFDTLDLATNAAMQGFGVA 234 Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + +V D+ + L R + V+ +F YPE L + K++AF ++I Sbjct: 235 IGDVTLVDDDVSARRLERPFDTVLETGARYFFVYPENLGSQQKIRAFSDWI 285 >gi|109897454|ref|YP_660709.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699735|gb|ABG39655.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica T6c] Length = 298 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 6/246 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +R F VAR SFT A+QL +S S+ I LE + LF+R R +TLTE G Sbjct: 5 EGMRTFIAVARQKSFTSGAKQLGISTKLASKYIGQLEKKHDALLFHRTTRSVTLTETGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + +Q SG +R+ G L L FL +PDI ++ Sbjct: 65 YFERCVPLLEQFDELEDVIQHRQSALSGTIRLTAPTAFGSTKLVDALAPFLKQHPDISVE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ + I + D AIR +Q S+LI +KL+ + + +A+P YL P Sbjct: 125 LSLSDQRVAIIDEGVDVAIRFGD-LQDSTLIAKKLMNMRVVVFASPEYLAQKGAPSHPNA 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L H+ + L ++ NW + + NS ++ Q G GI + Sbjct: 184 LATHHCL----LQKSQVDPLNWKFKENGLTFNVNVHGVFASNSPRAVTQMAAQGLGIGMG 239 Query: 245 PDYIVK 250 P Y+ + Sbjct: 240 PIYVTE 245 >gi|329997062|ref|ZP_08302689.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|328539177|gb|EGF65208.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 327 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS + AA L++ +++SR I LE+ +G++L R R LTLT+ G + ++ Sbjct: 40 GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAARRILEEV 99 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + + +P G+L I+ G+ + + EF+ YP I+++L+L +++ D+ Sbjct: 100 ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRVRLLLSDRNADLVS 159 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 D+ D A+R+ + SS++ +L T+ + A A P L EP ++L +I Sbjct: 160 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 218 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254 +P F D+ I P + L V + S LG G+A L Y D + Sbjct: 219 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 276 Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L ++E+V V+ Y KL+ F +F Sbjct: 277 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 311 >gi|89072268|ref|ZP_01158847.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] gi|89051800|gb|EAR57252.1| transcriptional regulator, LysR family protein [Photobacterium sp. SKA34] Length = 305 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 12/296 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L+V VA S T AA L + ++ S + +E +G+++F R R L L+ G + Sbjct: 4 EDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAYLGVEIFVRSTRHLRLSSAGER 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E LE ++ +QE G++RIA + DLG+NL+ L EFLL YP++ ++ Sbjct: 64 YLPQCEEALKMLEHAKVNMQEELGIIDGEIRIALSSDLGRNLVTPWLDEFLLQYPNVSLR 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + + +ID D D A+R P ++ K+ + A+P YL P + Sbjct: 124 SSISDSNIDFYRDSVDMALRYGSPTD-QNVYGFKICDVPRVVCASPSYLAEHNIPTHPSD 182 Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242 L +HN + + D++ WL + + + ++ + N + ++CV G G+A Sbjct: 183 LLEHNALFYQLYDVLQN-----EWLFSNEETTHKVKLKGNRASNDGDLVRRWCVAGKGVA 237 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 + + D+ +V +M++ T ++ P T ++ R+ K + Sbjct: 238 IKSSLDMSDDLLAERVVSMMQEYKTTPTELWLVCPSRQSVTPTVRLLRDLFRNKTK 293 >gi|330962472|gb|EGH62732.1| LysR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 315 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 11/291 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61 +WD L+ F VAR+ + AA++L + +++SR+I+ LET +G LF + G +T Sbjct: 11 LNWDDLKFFLEVARTRKVSSAAKRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 +G L + L ++ SSV SG +R+ T G + L FL YP Sbjct: 71 EGQHLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLGSYPS 130 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 I + ++ I +S AD I L +P + + KL + YA YL + Sbjct: 131 ISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQEYLDSHAPIQ 189 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239 +L +H I++ D + E +L+ + P + Q+ S I QY + G Sbjct: 190 RKADLSEHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242 Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +A+LP ++ +P LV ++ED + + + E L+ ++ ++I Sbjct: 243 ALAILPCFLATQDPRLVPVLEDEVNITRQFWMYCREDLRKLKRITVLWDYI 293 >gi|330821642|ref|YP_004350504.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373637|gb|AEA64992.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 332 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 24/274 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR F AR SFT A ++L+++QS++SRQ+ LE + I+LF+RH R LTLTE+G Sbjct: 14 DFLRGFECAARHLSFTKAGQELNVTQSAVSRQVKALEERLQIELFHRHIRALTLTEEGRS 73 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ + +E L E + + + ++TT+ L L F + +PDI ++ Sbjct: 74 LYGTIAMALSDIEHAIDALSEGVAQRA--ISLSTTVSFAALWLIPRLGSFRMQHPDIDVR 131 Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + ++ D+ D A+R P + L + ++V + A+ + R P Sbjct: 132 VSATSEIEDLRRKRLDFAVRYIGPNMLVPDARVLFRERVVAVCSPGLASAQGMA-IRTP- 189 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRI---SCLQVNSYLSIMQYCV 236 +L +H L+ D ++ W A T+ + +G PR+ L + Y ++Q V Sbjct: 190 --ADLGRHVLLHMHD----ARGEWPWYAWDTLLKALGVPRMKPAGGLTFSQYDQLVQAAV 243 Query: 237 LGSGIAL----LPDYIVKDNPNLVRIMEDVITPS 266 G GIA+ L D +++ L+ + D PS Sbjct: 244 DGHGIAIGRRPLIDGLIRQG-RLIELFGDCTVPS 276 >gi|152981643|ref|YP_001352264.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151281720|gb|ABR90130.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 321 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 129/283 (45%), Gaps = 8/283 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++ F + +GS + AAEQL SQ ++SR++ LE +G++L R + LTE G + Sbjct: 15 MQTFVRIVEAGSLSAAAEQLKTSQPTVSRRLQALERSLGLRLLQRSTHVMKLTEDGERCF 74 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + +L+ + +P G LR+ GQ L L ++L YP + ++ + Sbjct: 75 ARAKELLDNWKAMEADLRGTQDEPEGTLRVLVPHAFGQEHLIAPLADYLGRYPRVSVEWM 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D + DCAI++ + + S++ KL + A+P +K L++ EL Sbjct: 135 LHDRHPDFIAEGIDCAIQVGV-VVNPSVVAIKLFDVPRIIVASPQLVKAHASSLTVDELH 193 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 + F + + + +PR+S +S ++ G G ++ Sbjct: 194 TLPWLAFRTFYREEVVLTRQSDGAEHAFSIQPRMST---DSLYALRTAVATGLGAGIVSG 250 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 ++V D+ L+ ++ D P VY YP A +L+ F Sbjct: 251 WLVADDIAQGRLLHLVPDWRAPPLPVYLVYPHARYYPARLRLF 293 >gi|120608988|ref|YP_968666.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120587452|gb|ABM30892.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 298 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 82/309 (26%), Positives = 140/309 (45%), Gaps = 31/309 (10%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L+ F V +GS T AA QL + S +SR ++ LE ++ L R R + LT Sbjct: 1 MKTTLEELQAFAAVVDAGSVTAAAAQLEQTASGVSRALARLEKKLDTTLLRRTTRRIGLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E+G T + L+ + + +P+G+LR+ +++ + F YP Sbjct: 61 EEGQAFLTRTRAILAALDEAEEHMAARRGQPAGRLRVNAATPFMLHVVAPLVPAFRDAYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 I ++L D ++ID+ D AIR+ ++ S+L R L + + A+P Y+ P Sbjct: 121 QIALELDTDERNIDLLERRTDVAIRI-GALRDSTLHARPLGSSRLRVLASPAYVATHGRP 179 Query: 181 LSIQELDKHNLITFG-----DLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234 S L +H L+ F +L P + W AT D + +S ++ Q Sbjct: 180 KSAAALAQHTLLGFTQPEALNLWPLRGPHGDAWAATPD----------IAASSGETLRQL 229 Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFR 287 + G+GIA L D++ ++ +LV+++ DV P VY+ +NT Sbjct: 230 ALQGTGIACLADFMTARDRERGDLVQLLARDTADVRQPISAVYY------RNTQLASRIA 283 Query: 288 NFI-FLKAR 295 F+ FL AR Sbjct: 284 CFLDFLAAR 292 >gi|49083952|gb|AAT51161.1| PA0181 [synthetic construct] Length = 311 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 10/187 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F A +GSF AA +L L+ + + + ++ LE+ +G++LF R R LTLTE G Sbjct: 6 NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG--- 62 Query: 67 HRVTSEVYHKLETTQIELQE-SSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R EV LE Q L SSV +PSG L+++ + G++ + L EFL YPDI Sbjct: 63 ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180 DN+ +D+ + D AI + ++ R L H+ A+P YL++ R P Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFEL-PPGVVARNLTPGHLILLASPTYLRDKPPIRHP 181 Query: 181 LSIQELD 187 + D Sbjct: 182 GDLGGFD 188 >gi|300310059|ref|YP_003774151.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072844|gb|ADJ62243.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 114/264 (43%), Gaps = 18/264 (6%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M DW+ LR F +GSF+ AA L ++ ++I R++ LE + LF R A + LT Sbjct: 1 MHADWESLRSFAAFVDAGSFSGAARVLGVTHATIGRRLQQLEQTLAAPLFIRRADDIELT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G + + + L ++ GKLR+A T +G L L L +P Sbjct: 61 RLGESVLAAARAMQDQTRQLARTLAGEDLRMEGKLRLACTDAMGTLFLAPRLPSLLQQWP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + I+L + ++ + ++ AD A+R +P Q LI R+L + + + R Sbjct: 121 ALDIELAMGHQTLSLARREADLALRFARP-QDGELIARRLGVVRFYLCGTADQVAAWR-- 177 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 + +I + D +P E WLA G P L+ S ++ G G Sbjct: 178 ---HQRGSAPVIGYDDSVPDIPET-RWLAA--HADGNP--VRLRSASLVAQCMAARAGVG 229 Query: 241 IALLPDYI-------VKDNPNLVR 257 +ALLP Y+ V+ P LVR Sbjct: 230 LALLPSYLLAPELQTVESTPQLVR 253 >gi|296161939|ref|ZP_06844739.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gi|295887815|gb|EFG67633.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 313 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 125/291 (42%), Gaps = 16/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF GSF AA + LS + + +S LE E+ +L +R R L LT+ G + Sbjct: 7 LGVFVAAVEEGSFAAAARRFGLSAAMAGKHVSALEAELNAQLLHRTTRRLRLTDTGQTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + E +S G LRIA + G L ++ +P + ++++ Sbjct: 67 ERCKRILEAFDEAKREASDSQGTARGVLRIAAPVTFGAMHLGEVAARYMEDHPHVNVEVL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D AIR+ K ++ L+ R+L M A+P YLK P +L Sbjct: 127 LGDRYVDLIDAGVDVAIRIGK-LEDPGLVTRRLAPCRMVVCASPAYLKRHGTPRKPDDLL 185 Query: 188 KHNLITFGDLIPK---CMEDF-NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 + + F + + + D N +D P C + N+ ++ + G+GI Sbjct: 186 RAQRLAFSEAVSAGDWTLHDRQNRAHVIDGP-------CRMTANNTQMLLASAIAGAGIV 238 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + LV ++ T+ YP A + K++ F +++ Sbjct: 239 YGPTFVFGAHIRSGELVALLPAYRAADLTIQAVYPSARRIPLKVRRFVDYL 289 >gi|222084977|ref|YP_002543506.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722425|gb|ACM25581.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 298 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 15/289 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V +GS + A L S + IS++I LE +G +L R R ++LTE G + Sbjct: 7 LEIFASVVATGSMSLAGRALGFSPAVISKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + LE + + S + G L+I+ G+ + +LK F+ +PD+ I LI Sbjct: 67 DRVLAILAGLEEAEAYIAGRSAQMQGTLKISAPTSFGRLHIAPHLKTFMQSHPDLAINLI 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ DI D AIR+ + + SSL+ R+L + A+P Y+ P +I +L Sbjct: 127 LTDEFTDIVGGGYDLAIRIAE-LTDSSLVARRLAPVRRLLCASPAYVATHGMPENIDDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H + + P ++ T RP G L NS I + + G GIAL + Sbjct: 186 RHICLPAHNHDPWRLDGPKGALTF-RPEG-----MLITNSSEVIREAVIAGLGIALRSTW 239 Query: 248 IVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290 + R+++ + P++ T+ YP K++ F +F+ Sbjct: 240 DIGPELKDGRLVQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRVFIDFL 286 >gi|254245613|ref|ZP_04938934.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gi|124870389|gb|EAY62105.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 431 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 1/193 (0%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ L F + +GS + AA +L LS S +S++++ LE+ +G++L +R R TLT+ G Sbjct: 46 DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 105 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 ++ H + ++E + +++ SG LR+ +LG+ + + F +P + Sbjct: 106 AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLVAAFQQRHPQLT 165 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +QL+L + +D+ D A+R+ + S++I R+L H A+P YL P Sbjct: 166 VQLMLTDAVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 224 Query: 184 QELDKHNLITFGD 196 EL H I GD Sbjct: 225 AELRAHRCIVMGD 237 >gi|270262695|ref|ZP_06190966.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043379|gb|EFA16472.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 302 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 118/247 (47%), Gaps = 3/247 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + VF V GSF+ AE++ LS + + I LE +GI+L R R +LT+ GS Sbjct: 5 ESMSVFVRVVERGSFSAVAEEMRLSGTMVGLHIKALEKHLGIRLLNRTTRRQSLTDFGSA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + +E T+ P G+L++ + G + L FL +P++ + Sbjct: 65 YYQSCRRILADIEDTESVALALHQSPRGRLKVGCPVSFGVHALSPATARFLTNWPEMTLD 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L +K +D++ + D I++ + +SL+ R L A+P YL+ P+ +E Sbjct: 125 LVLSDKTMDMAEEGLDVMIKVGELEHVNSLVARPLAAYRSVICASPAYLERAGTPVHPEE 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L +H + F P +++ L + I P + VN+ ++ + G GI + P Sbjct: 185 LIEHRCLGFAH--PLAGSEWS-LQQGGKLIKVPVNIVMAVNNGEALRSAALNGLGILMQP 241 Query: 246 DYIVKDN 252 + ++ ++ Sbjct: 242 EVLLAED 248 >gi|241205836|ref|YP_002976932.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859726|gb|ACS57393.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 298 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 121/295 (41%), Gaps = 17/295 (5%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A +L ++Q+++S QI LE VG LF R R + LT+ Sbjct: 7 FPLNALRVFEAAARLGSFTKAGNELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTDT 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ + ID + D IR L +L+ + +P + Sbjct: 124 AVRFQASSDIIDFGREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAETAGGIKE 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++L K +L GD+ K + + D RP Q+ S + G Sbjct: 183 PRDLLKFDLFDAGDIWWKQWFEAAGITETDLDRRPRN-------QLGSQAVEADAAIAGH 235 Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G+A+L L R+ E + + YPE +N K+KAFRN+I Sbjct: 236 GVAILHPAFYTAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290 >gi|224824895|ref|ZP_03698001.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gi|224602566|gb|EEG08743.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 317 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 5/195 (2%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A+SGSF AA L +S +++S+ ++ LE +G++L R R L LT +G Sbjct: 13 FVQAAQSGSFAAAARSLGISSAAVSKNVASLEQGLGVRLMNRTTRSLKLTAEGLAFLEQA 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 L+ + V P+G++RI+T+ G++ + L L +P + +++ D+ Sbjct: 73 RIALDALDAAVDTVAAQRVVPAGRVRISTSAAFGRDQVMPALPGLLERHPALSVEVDFDD 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D A+R + + S+L+ R + ++M A+P YL P + Q+L +H Sbjct: 133 RRVDLVQEGYDLAVRGGQ-LVDSALVSRLICRLNMVLIASPAYLARYGVPRTPQDLPQHR 191 Query: 191 LIT----FGDLIPKC 201 LI G L P C Sbjct: 192 LIARRFLGGRLSPWC 206 >gi|170695190|ref|ZP_02886337.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gi|170139810|gb|EDT07991.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 294 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS T AAE+ +S + + + I LET +G +L R R +LTE G + + Sbjct: 7 MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLGTRLLTRTTRRQSLTEIGRQYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ + + + P G L++ + G + + ++L +PD+ ++L Sbjct: 67 EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFSSAMTDYLSAWPDVTLELD 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N+ D+ + D A+R+ + SS + R L M A A+P YL P + +L Sbjct: 127 LSNRMRDLVEEGFDAAVRIGH-LPDSSFVARPLKPYRMRACASPAYLARAGIPRTPADLA 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + F + + + P+ R + N+ ++ + G G+ L P+ Sbjct: 186 HHECLGFLHWGREGTWRLGGESATENPL---RAGRFRANNGQALKVAALRGFGLVLQPEA 242 Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 ++ ++ LV ++E+ + V+ YP + T KL +F +F+ Sbjct: 243 LLAREIESGELVSVLEEHLPQGAPVHLVYPRDRRATPKLTSFIDFV 288 >gi|34497625|ref|NP_901840.1| LysR family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34103481|gb|AAQ59843.1| probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472] Length = 306 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 129/281 (45%), Gaps = 10/281 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V ++G+ + AA++L +S +++SR+++ LE +GI+L R R +T +G Sbjct: 10 FMEVVKAGTLSGAAQELGVSTAAVSRRLANLEVRLGIRLLNRTTRRAAVTYEGELYLAEG 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 ++ +LE + L + P G LR+ T G+ + + +F+ L+PD+ +QL L + Sbjct: 70 KKILGELEELEQRLASAHSVPKGLLRVNATFGFGRQFIAPAIADFVELHPDVDVQLSLSD 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +++ D D IR + + L RK+ A+P YL+ P S +L +H Sbjct: 130 RPVNLIEDGFDVCIRF-GDLPDARLTSRKIACNRRLLCASPGYLERFGIPASPMDLQRHR 188 Query: 191 LITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248 I +I + E + W ++ + N + + + G GI L ++ Sbjct: 189 CI----VIRESDETYGAWHLYSGAAQANVKVRGTVSTNDGEVAVDWALRGLGILLRSEWN 244 Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 V + L ++ D P ++ YP + K++AF Sbjct: 245 VAPYLRSGRLREVLGDWRFPPADIHAVYPMKSNLSAKVRAF 285 >gi|220908328|ref|YP_002483639.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864939|gb|ACL45278.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7425] Length = 293 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 134/297 (45%), Gaps = 34/297 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F GSF+ A +L +Q +IS+QI+ LE + ++L R R ++LT++G + + Sbjct: 8 LKSFVRTVEMGSFSAVARELGTTQPTISKQIAALEAYLDVQLLVRSTRKVSLTDEGLRFY 67 Query: 68 RVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 V L ESSV PSG+LRI ++ GQ + LK FL YP IQ Sbjct: 68 EHCQFVLAALSEA-----ESSVGKRQNPSGRLRINCSVAFGQMQVLPRLKRFLDRYPQIQ 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQ----RKLVTIHMHAYAAPHYLKNCRE 179 I L + + ID+ + D AIR+ + + S + Q + VT+ AA YL+ + Sbjct: 123 IDLTMADHFIDLVEEGMDLAIRIGRFVDPSLMAQPIGVSRFVTV-----AAVDYLEKFGQ 177 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236 P +L +HN I + + + G+ ++ LQVN+ +++ + + Sbjct: 178 PQVPTDLLQHNCIVYTRQSTGNVWQY----------GDTSVTVQGNLQVNNSIALREAVL 227 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G GI P + + ++ ++ D + Y KLK F +F+ Sbjct: 228 AGIGIGTSPIWAFSEELQKRSVKLVLADYEPEPLPIQVVYRRGRFQAAKLKCFIDFL 284 >gi|49084716|gb|AAT51225.1| PA1312 [synthetic construct] Length = 304 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 14/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ F V G + AA+ L +++ +S + LE E+G+ L R R + LT+ G + Sbjct: 5 DRFETFRAVVDCGPLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAGER 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V + + + + G LR+ TT + G L L+ F L+P +Q+Q Sbjct: 65 FYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + D+ + D AIRL + ++ S+ +L + + A A+P L EP Sbjct: 125 LSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDL 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239 L G + + W V P G PR L ++ ++ + + G Sbjct: 184 ESLERLQNLGH--SRLADSLPW--QVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LPD++V+ + L R++ D P V+ YP K++AF +F+ Sbjct: 240 GIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFL 293 >gi|238894052|ref|YP_002918786.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238546368|dbj|BAH62719.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 320 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 31/300 (10%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF +VAR F AAE+L +S + +S+++S LE + + L +R R +T+TE+G + Sbjct: 15 NDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGER 74 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ + ++ EL + P G LRI ++ G+ ++ L L YP ++++ Sbjct: 75 IYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELR 134 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + D IR+ I + +LI R+L H A+P +L P + + Sbjct: 135 FDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHAPPKQLSD 193 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233 L +P C+ + D P G ++ ++V LS + Q Sbjct: 194 LAA---------LP-CLV----IKERDHPFGVWQLHSKEGQHAIKVTGPLSSNHGEIVHQ 239 Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +C+ G GIAL + V++N +LV+++ D P+ V+ Y L + K++ F+ Sbjct: 240 WCLDGQGIALRSWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 298 >gi|294340728|emb|CAZ89120.1| putative Bacterial regulatory protein, LysR [Thiomonas sp. 3As] Length = 302 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 11/256 (4%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA SGSF+ AA QL + S++SRQ+S LE +G++L R R L LT G Sbjct: 16 FLRVAESGSFSAAARQLGTTPSAVSRQVSRLEKHLGVQLILRTTRQLRLTAAGDAARVRC 75 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 E+ Q+ + P G + I+ +++L L +FL +P +Q+QLI + Sbjct: 76 GELVAAAHAVMQVPQQIAGTPKGSICISAPKAFARHVLHPLLLQFLAQWPQVQLQLIATD 135 Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++D + D IR+ R P + R+L+ + AAP YL +L H Sbjct: 136 HEVDPFREGVDLMIRVTRHPPE--GFAARELMQVEQVLCAAPAYLAAHPAITHPSDLAVH 193 Query: 190 NLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248 + + G D +C F T + + + R + VN ++ ++G G+ LPDY+ Sbjct: 194 SCLPLGEDAHDRCWR-FRQGDTETKVVVQGRYA---VNHSALRLEAMLVGLGLCTLPDYV 249 Query: 249 VK---DNPNLVRIMED 261 + +N + V+++ D Sbjct: 250 ARHALENRSAVQVLPD 265 >gi|260430606|ref|ZP_05784579.1| transcriptional regulator, LysR family [Citreicella sp. SE45] gi|260418635|gb|EEX11892.1| transcriptional regulator, LysR family [Citreicella sp. SE45] Length = 305 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 3/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LRVF V GS T L L+ + S++I LE+ +G++LF R R +T TE G + Sbjct: 7 LRVFVRVVELGSITSGGRDLRLTPAVASKRIKELESRLGVRLFNRTTRSITPTEVGGVFY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 V L+ + + S P G LR+ + +G+ ++ + EF YP++Q+Q+ Sbjct: 67 EQAKAVLASLDEAEAVVANFSETPRGALRVTAPLGIGRRIIAPLVPEFTERYPEVQVQMR 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186 L ++ +D+ + D A L P + S+L R + AAP YL+ P S ++L Sbjct: 127 LSDRLVDMVGERLDVAFFLGVP-RDSNLKLRHICDCPGVLCAAPGYLERHGTPASPEDLL 185 Query: 187 -DKHNLI 192 KHN + Sbjct: 186 GGKHNCL 192 >gi|186472859|ref|YP_001860201.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195191|gb|ACC73155.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 308 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 8/240 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LR+F +A +GSF+ AA + +S S+++ + LE EVG +L R R L T +G + Sbjct: 5 DALRLFVEIAEAGSFSAAARKSTVSTSTVTLALQKLEEEVGARLIMRTTRRLAFTHEGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 V + + L+E +G +R+ + D G+ + L +F+ LYP +Q+ Sbjct: 65 FLDDARRVLADWDAAILSLREDG-PLNGPIRLTASTDFGRTRVVPLLDKFMSLYPQVQVS 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+L + +D+ + D A+R P+ L R L+T AAP Y + + + Sbjct: 124 LLLTDGVVDLVDQHLDLALR-HGPLIDPRLKARLLLTGPRVVCAAPSYWAAHGKAMHPSQ 182 Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIAL 243 L HN + ++ + F NW VD R+S +V S S++ ++ V G G+ L Sbjct: 183 LSSHNCL----ILARPDAPFTNWPFVVDGKQIAVRVSGNRVASDGSVLREWAVNGYGVIL 238 >gi|113868110|ref|YP_726599.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113526886|emb|CAJ93231.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 307 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/297 (22%), Positives = 140/297 (47%), Gaps = 16/297 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F VA +GS + AA L ++ +++S++++ +E +G+ L R R ++LT +G Sbjct: 11 ELGFFTSVATAGSLSAAARDLGITTAAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVY 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +++ L S +PSG LR+ T+ G+ + + E++ YP++ +QL Sbjct: 71 LEHARRILSEIDDLDQILTRSKGRPSGLLRVNATLGFGRMHVAPVISEYVATYPEVDVQL 130 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ D D +R +P + ++ RKL A+P YL++ P + +L Sbjct: 131 QLSADPPPLTEDAFDVCVRFGQP-PDARIVARKLAPNRRLLCASPKYLRSHGTPHTPADL 189 Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239 +HN I I + + + W T + + R + V L+ + + + G Sbjct: 190 RQHNCIG----IRQGSDAYGVWRLTSGKGT-KARTESVHVRGNLTTNDGEIAVNWALQGH 244 Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI + ++ ++ + LV+++ TP +Y Y + + + +++ F F+ + Sbjct: 245 GILMRAEWDIERFLRSGRLVQVLPQYATPEADIYAVYQQRHQLSSRIRLFVEFLAAR 301 >gi|107099170|ref|ZP_01363088.1| hypothetical protein PaerPA_01000180 [Pseudomonas aeruginosa PACS2] gi|218888926|ref|YP_002437790.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254237581|ref|ZP_04930904.1| hypothetical protein PACG_03662 [Pseudomonas aeruginosa C3719] gi|296386668|ref|ZP_06876167.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313112244|ref|ZP_07798017.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gi|126169512|gb|EAZ55023.1| hypothetical protein PACG_03662 [Pseudomonas aeruginosa C3719] gi|218769149|emb|CAW24909.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310884519|gb|EFQ43113.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] Length = 310 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 10/187 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F A +GSF AA +L L+ + + + ++ LE+ +G++LF R R LTLTE G Sbjct: 6 NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG--- 62 Query: 67 HRVTSEVYHKLETTQIELQE-SSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R EV LE Q L SSV +PSG L+++ + G++ + L EFL YPDI Sbjct: 63 ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180 DN+ +D+ + D AI + ++ R L H+ A+P YL++ R P Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFEL-PPGVVARNLTPGHLILLASPAYLRDKPPIRHP 181 Query: 181 LSIQELD 187 + D Sbjct: 182 GDLGGFD 188 >gi|293605825|ref|ZP_06688197.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292815783|gb|EFF74892.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 292 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 7/288 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++L++F V +GSFT AA+ L +++ +S + LE E+G+ L R R L LT G Sbjct: 5 NRLQMFVAVVDAGSFTAAADSLGTTKAVVSFNVKQLEQELGVALLTRSTRRLALTPAGEG 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H S + H + + + SG LR+ ++D G ++ L F L+P +++ Sbjct: 65 FHASCSRLLHDADAAVDQARSGQTALSGSLRVTASVDYGNRIVVPALAAFARLHPALRVA 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + D+ + D AIR+ + SS ++ + A+P L P S Sbjct: 125 YQASSAQADLIGERLDVAIRV-GALADSSHRATRIGEFKLLLVASPALLAEHGTPRS--- 180 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 LD + + P + + + R Q ++ +++ + G G+A LP Sbjct: 181 LDALAALPWLANRPGRSDHWRLTDSKGREHALRVAPVAQADTASALLAFAESGCGVAALP 240 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 D+++++ L R++ P V YP+ + K++ F +F+ Sbjct: 241 DWLLEEPLARGALQRVLPSYALPRQPVCAVYPDTRHVSAKVRRFIDFL 288 >gi|91781381|ref|YP_556588.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91694041|gb|ABE37238.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 322 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 16/291 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF GSF AA + LS + + +S LE E+ +L R R L+LT+ G + Sbjct: 7 LGVFVAAVEEGSFAAAARRFGLSAAMAGKHVSALEAELNARLLQRTTRRLSLTDTGQTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + E +S G LR+A G L + +L +P + ++++ Sbjct: 67 ERCKRILEAFDEARREASDSQGTARGVLRVAAPATFGAMHLGEVVARYLEDHPHVNVEVL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ D AIR+ + +++ L+ R+L M A+P YLK P +L Sbjct: 127 LGDRYLDLIEAGVDVAIRIGR-LENPGLVTRRLALCRMVVCASPAYLKRHGTPRKPDDLM 185 Query: 188 KHNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242 + F + + + N +D P C + N+ ++ + G+GI Sbjct: 186 HAQRLVFSEAVSAGDWTLRDGKNRAHVIDGP-------CRMTANNTQMLLASALAGAGIV 238 Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P ++ + LV ++ D T+ YP A + K++ F +++ Sbjct: 239 YGPTFVFGAHIRRGELVALLPDYRPADLTIQAVYPSARRIPLKVRRFVDYL 289 >gi|167841234|ref|ZP_02467918.1| probable transcriptional regulator [Burkholderia thailandensis MSMB43] Length = 214 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 3/200 (1%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F +GSFT AA ++ +S+S++ + ++ LE ++G++LF R R L LT +GS + Sbjct: 14 AFVHAVSAGSFTAAAARMGVSKSAVGKSVAKLEAQLGVRLFDRTTRSLGLTAEGSLYYAS 73 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 +++ +L Q L + SG LR++ + G+ + L + +P +++ L Sbjct: 74 CAKILDELAHAQSALAHRRQQASGPLRVSLPVSFGRRWVLPVLLDVAERHPLLRLDLSFT 133 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 ++ +D+ + D A+R+ P S+SL R L A+P Y P + ++L +H Sbjct: 134 DRPVDLVDEGIDLAVRIGDPGDSASLACRGLGRQRSVPCASPAYFARRGRPRTPEQLREH 193 Query: 190 NLITF---GDLIPKCMEDFN 206 + I F G + P + D N Sbjct: 194 DCIVFARGGRVAPWLLADDN 213 >gi|116253315|ref|YP_769153.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257963|emb|CAK09061.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 298 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 123/298 (41%), Gaps = 23/298 (7%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F + LRVF AR GSFT A ++L ++Q+++S QI LE VG LF R R + LT+ Sbjct: 7 FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTDT 66 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G +L +E + L ++S G L I++T L L F L +P I Sbjct: 67 GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCRE 179 ++ + ID + + D IR L +L+ + +P + RE Sbjct: 124 AVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAEAAGGIRE 182 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCV 236 P + D L GD+ K + + D RP Q+ S + Sbjct: 183 PRDLLNFD---LFDAGDIWWKQWFEAAGVTETDLDRRPRN-------QLGSQAVEADAAI 232 Query: 237 LGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+A+L L R+ E + + YPE +N K+KAFRN+I Sbjct: 233 AGHGVAILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290 >gi|270262500|ref|ZP_06190771.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043184|gb|EFA16277.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 299 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 9/257 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L +F V + GS A +L S +I+R I+ LE G +L R R L TE G + Sbjct: 5 DELAIFVAVIQHGSLAAAGRKLRRSAPAITRAIASLEQRFGTRLVERTTRRLAPTEAGLR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + H ++ ++ +S + SG LR+ + + G+ + + FL YP +QI+ Sbjct: 65 LAERARLLLHDYDSAVLDTADSQL--SGMLRVTSPVQFGRKHVAPLVMAFLDRYPQMQIE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++L+++++D+ + D A+R+ Q SS + R+L + A+P YL +P + Sbjct: 123 MVLNDRNLDLIDEGLDVAVRIGHQ-QDSSRVARRLGQVSRVTVASPAYLARRGKPQHPAQ 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L H+ I F +R PR+ +V + L ++ G GIA L Sbjct: 182 LTDHDTIVGTQRASLREWRFGPQENGERVRLTPRLLINEVETQLLAVRA---GKGIARLL 238 Query: 246 DYIVKDN---PNLVRIM 259 Y V D+ LVR++ Sbjct: 239 SYQVADDLAAGTLVRLL 255 >gi|262274008|ref|ZP_06051820.1| transcriptional regulator LysR family [Grimontia hollisae CIP 101886] gi|262221818|gb|EEY73131.1| transcriptional regulator LysR family [Grimontia hollisae CIP 101886] Length = 298 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 140/294 (47%), Gaps = 13/294 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 + ++ V VA FT AAE L +S+S +S+QI LE +G++L R+ R + LTE G Sbjct: 4 NLQQMVVLATVAHEQHFTRAAEYLGISKSQVSKQIRFLEARLGVQLVQRNTRSVALTEAG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + ++ ++ + + + SG+LR+ G + L F +P+++ Sbjct: 64 KQYAAFGHQIVETMQNAEAVVAGFRNEVSGRLRVGIAQSFGNAQITQLLSSFQAQFPELE 123 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ L + ++ + DC + + + + S ++ RKL A+P Y++ P Sbjct: 124 LEVHLFDHCPNLVENGFDCWLVIHE-VPSEGMVTRKLGDCQFKLVASPSYIEKNGTPKHP 182 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240 +L +HN IT+ ++ + + D W + R E ++ ++N+ ++++ G G Sbjct: 183 SDLREHNCITYQNV--QHIYD-QW--SFQRDGSEQSVTVRGSYRINNAPAVLEAAKSGVG 237 Query: 241 IALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 IA + Y++ D N L +M+D T VY YP K++ F +F+ Sbjct: 238 IAYIATYLLNDEIKNGELNVLMKDWKPTMKLPVYAVYPRREYLAPKVRHFVSFL 291 >gi|157374363|ref|YP_001472963.1| carbonate dehydratase [Shewanella sediminis HAW-EB3] gi|157316737|gb|ABV35835.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3] Length = 313 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L R R L+LTE G Sbjct: 6 EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ E+ E + + G L++ + G + L EF+ +P++++Q Sbjct: 66 LYTQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMTTHPELELQ 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L + +D+ + D + + + + ++ R L+ A+P Y+K +P ++ Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPEYIKLHGQPDRPEQ 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + + + E W E +S +V++ ++ V G G+ L Sbjct: 185 LVDHNCLVYQG---EWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241 Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+++D LV +++D +T + YP K+ AF +FI Sbjct: 242 ASYLLEDEVAKGTLVPLLQDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291 >gi|307942029|ref|ZP_07657381.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307774819|gb|EFO34028.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 223 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 3/200 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR+F V+A GS AA + LS +++S +++ LE+ G+ LF R R ++LTE+G Sbjct: 4 NNLRLFLVIAEKGSLVAAARETGLSTTTVSERLASLESHYGVVLFNRTTRSISLTEEGRV 63 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L V ++ ++ + SG +R++ IDLG+ L+ + F L P + I+ Sbjct: 64 LLEGAKTVLSEVSDLDARIRHGAETLSGPIRMSAPIDLGRGLISEVISSFTLKNPAVSIE 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + +D+ D A+R + +SL R L AA YL+ P + ++ Sbjct: 124 LSLSDGYVDLVGQGFDLAVRFGN-VTDTSLRVRSLGHFQRRVCAATAYLEQHGVPQTPED 182 Query: 186 LDKHN--LITFGDLIPKCME 203 L HN ++ FG + E Sbjct: 183 LANHNCLVMRFGGTLDNIWE 202 >gi|298489044|ref|ZP_07007067.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156542|gb|EFH97639.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 300 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 21/300 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF+ AA L +S S++S + GLE + ++LF R R + LTE G +L Sbjct: 8 ELTAFVAIAEQRSFSGAARLLGVSPSALSHSMRGLEARLELRLFNRTTRSVALTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + LE ++ PSG +R++ + + L++ + +FL P I I+ Sbjct: 68 FLRVQPLLGDLECAVNDVTSERNTPSGSIRLSASESSFKLLIRHVMPKFLEDNPQIHIEC 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 I D++ +DI D D IRL + + R + A A+P YL P + +L Sbjct: 128 IADSRLVDIVADGFDAGIRLFDDVPRDMIAIRFGPDVRFAAVASPDYLDIHPAPKAPHDL 187 Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H I F G L + A++D + P + +++ + + + G GIA Sbjct: 188 KAHRCIRFRFASGTLFRWDLGHLGRTASID--VDGP----MTMDNINLMTEAALAGIGIA 241 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYF---C--YPEALKNTGKLKAFRNFIFLKARDW 297 LP++ V+++ R++ + P + Y+ C YP L+ F + RDW Sbjct: 242 WLPEHQVEEHLKDGRLVH--LLPEWGPYYPGACLYYPANRHPPMALRMFAEAV----RDW 295 >gi|257487616|ref|ZP_05641657.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013099|gb|EGH93155.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 306 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F+++A+ GS A +L ++ +IS+++S LE +G +L R R ++LT +G Sbjct: 7 LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEVRLGTRLVNRTTRSMSLTAEGELYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ + + SS P G +R+ ++ G+ + L F YP++QIQL Sbjct: 67 SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D IR + ++ RK+ + A+P YL+ P + EL Sbjct: 127 ISDHPLDLATHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 HN I + P + F+ + C N + + + G GI L + Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + L ++ED VY YP+ L + +++ +F+ Sbjct: 243 WDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFL 289 >gi|218670649|ref|ZP_03520320.1| probable transcriptional regulator protein, LysR family [Rhizobium etli GR56] Length = 261 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 95/180 (52%), Gaps = 1/180 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +G+FT AA+ L + +++++ I GLE + KL R R + +T G+ + Sbjct: 10 MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ +LE L S PSG+LR+ + ++ L +F YPDI++ L Sbjct: 70 ERAAQLISELEELDGSLSNSQSLPSGRLRVEMSGAFADAIVVPALCDFYQRYPDIRLDLG 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D ++ DCA+R P SLI R++ + + A+P Y++ P ++L+ Sbjct: 130 VSDRTVDYLVENVDCALRAGTPAD-QSLIARRVSEMELITCASPSYIQKFGMPERPEDLE 188 >gi|91794151|ref|YP_563802.1| LysR, substrate-binding [Shewanella denitrificans OS217] gi|91716153|gb|ABE56079.1| LysR, substrate-binding [Shewanella denitrificans OS217] Length = 294 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 5/192 (2%) Query: 4 DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW + F ++ GSF+ AA +S S++S++I LE ++G+ LF R R + LTE Sbjct: 2 DWLTATKSFNLLVEHGSFSQAAAVAEISPSAMSKRIDWLEKQLGLSLFVRTTRQVNLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + ++ + E E Q+ + +PSG LR+A +G +L ++ FL+LYP++ Sbjct: 62 GFDFLSRSKDLVGQFEDMISETQQFANRPSGTLRVAANSVVGSAILMPCIEAFLVLYPEV 121 Query: 123 QIQL-ILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 + L IL + D+ D C R SS+ KL + YAAPHYL N Sbjct: 122 TLHLDILPFGEFPDLDHDLVLC--RKFDNFNSSAHRGTKLYNYRVGLYAAPHYLANNPAI 179 Query: 181 LSIQELDKHNLI 192 + ++ +H ++ Sbjct: 180 TQLADVSEHKMV 191 >gi|170751077|ref|YP_001757337.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657599|gb|ACB26654.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 288 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/303 (25%), Positives = 138/303 (45%), Gaps = 36/303 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D D LR F VA +G + A+ +L++++S +SR++ LE EVG +L R RG LTE Sbjct: 1 MDVDDLRTFVEVADAGGVSAASRRLNMAKSIVSRRLLRLEAEVGTQLLARTTRGAALTEA 60 Query: 63 GSKLH----RVTSEVYHKLETTQIELQESSVKPSGK----LRIATTIDLGQNLLQGNLKE 114 G+ RV +EV LE +V P G LR+A G + E Sbjct: 61 GTTFREHAARVCAEVDAALE---------AVSPGGALRGLLRVAVPSTFGPTHFAPAIAE 111 Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174 +P ++I ++ +D+ + DC IR+ + S+L+ R++ + + +A+P Y+ Sbjct: 112 LTRRHPQLRINCRYSDRYVDLVTEGFDCGIRVGY-LPDSNLVARRIGSFSVRLFASPDYV 170 Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS 230 P + +++ +H + E + + A RP G + +S ++ Sbjct: 171 ATHGAPETPEDVPRHPAVMI------ATETWTFSAGGKPFPVRPTGR-----FKADSAIA 219 Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287 I + G+GIA LPD I + L+ +M PS ++ P ++ K++A Sbjct: 220 IAEATAAGAGIAALPDVIAEPYVAAGTLIPVMPRYALPSIGMFVVRPPGQHSSRKVQALT 279 Query: 288 NFI 290 + + Sbjct: 280 DLL 282 >gi|90410584|ref|ZP_01218600.1| hypothetical transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] gi|90328825|gb|EAS45109.1| hypothetical transcriptional regulator, LysR family protein [Photobacterium profundum 3TCK] Length = 314 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 136/283 (48%), Gaps = 21/283 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A G+ T AA QL +S ++ S + LE ++GI+LF R R L +T +G + Sbjct: 6 LELFVRTADIGNITAAAVQLDISPAAASAALKRLEKQLGIELFIRSTRQLRITAEGERFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + + E + +G++R++ + DLG+NL+ L E + P + QL Sbjct: 66 LHCRQALSSLDDAKASITEMKGEIAGEVRLSVSSDLGRNLILPWLDEVMDNNPKLSFQLS 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D MD D A+R +P + S++I KL T+ A+P Y+ P ++L Sbjct: 126 IGDSLADFYMDKVDVALRYGQP-EDSTMIAFKLATVDRVICASPGYIATYGSPKKPEDLL 184 Query: 188 KHNLITFG---------DLIPKCMEDFNWLATVDRPI---GEPRISCLQV-NSYLSIMQY 234 +HN + + +LI K N ++ D I + ++S ++ N + ++ Sbjct: 185 QHNCLLYQLGSKTYNQWELISK--NSGNTISNTDDSIKSRSKIKVSSNRMCNDGDIVKRW 242 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277 V G GIAL + + N R++E + P Y+ P +L Sbjct: 243 AVAGKGIALKSRLDLSHDLNAGRVIE--LMPD---YYVEPTSL 280 >gi|78063769|ref|YP_373677.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971654|gb|ABB13033.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 305 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/266 (24%), Positives = 126/266 (47%), Gaps = 10/266 (3%) Query: 25 EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84 E+LH+++S++ + ++ LE +G+ LF R R +LT++G+ + +++ + L Sbjct: 25 EKLHITRSAVGKSVARLEERLGVVLFQRTTRSQSLTDEGALFYDHCLRAMEQIQAGEALL 84 Query: 85 QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144 + + G+LR++ G + L E +P++ + L ++ +D+ + D A+ Sbjct: 85 ETGKWQMKGRLRVSMPTLFGHLCVAPILIELAKAHPELDLDLSFSDRSVDLVEERFDLAV 144 Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204 R+ SS L+ R L M A+P YL C EP + +EL++H + + + + Sbjct: 145 RVGTLPNSSELVARPLGEHRMAFCASPAYLSRCGEPTTYEELERHKALAYT----RFGQV 200 Query: 205 FNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259 W VD R +P + L + ++M V GIA LP ++V+D L ++ Sbjct: 201 HRWRVFVDGQRVELQPAVRLLS-DDLSALMDAAVADLGIAWLPYWLVRDALRGGVLRELL 259 Query: 260 EDVITPSFTVYFCYPEALKNTGKLKA 285 D F + +P L K++A Sbjct: 260 PDRPGVIFPIQAVWPYTLHLPLKVRA 285 >gi|253686893|ref|YP_003016083.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753471|gb|ACT11547.1| transcriptional regulator, LysR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 300 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 2/184 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V +GS AA +S +++S+ +S LET +G++L R R +TLTE G + Sbjct: 10 FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLLSRTTRSMTLTENGKRYFEKV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + H +E + S K G L IATT G+ ++ + F +PDI I+LI + Sbjct: 70 RHIPHDIELAS-QAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKESFPDIDIELISTD 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++++ ++ D +IR+ + + LI RK+ ++ AA YL P + +EL +H Sbjct: 129 RNVNHRLEGVDVSIRIEAQL-NDQLIARKIASLPFIFCAAQAYLDRAGTPQTPEELSQHA 187 Query: 191 LITF 194 + F Sbjct: 188 CLVF 191 >gi|218674327|ref|ZP_03523996.1| LysR family transcriptional regulator [Rhizobium etli GR56] Length = 288 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 19/260 (7%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + DWD LR F +A+SG+ AA+QL + ++ISR+IS LE +G KL R R ++LT+ Sbjct: 8 NIDWDDLRHFLALAQSGTLLGAAKQLGVEHATISRRISSLEGRLGRKLVDRRGRRISLTQ 67 Query: 62 QGSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 G ++ R + V ++T IE + S + G +RI+ L LL + + Sbjct: 68 DGEQVARYAALV--AVQTAAIEQLGRSSPTELRGHVRISAPPALSSVLLAKPIAAVRRNH 125 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 P ++I L+ + + ++ AD A+R+ +P I KL H YA+ YL E Sbjct: 126 PGVEITLVGEKRLASLNRREADIAVRMSRPEDGDYSIV-KLGETSFHLYASKTYL----E 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 + Q+ I + D + + + RPI R S L+ + G Sbjct: 181 TVPPQDW---TFIGYDDTMNASPQQSRLIELAAGRPIAV-RSSVLEFQA-----AAASFG 231 Query: 239 SGIALLPDYIVKDNPNLVRI 258 +G+ +LPD++ ++ L RI Sbjct: 232 AGVVMLPDFVALESSGLRRI 251 >gi|78063703|ref|YP_373611.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971588|gb|ABB12967.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 305 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 92/188 (48%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F +A SF+ AA L +S S++S + LE +G++LF R R + LTE G +L Sbjct: 8 ELTTFITIAEQRSFSGAARILGVSPSALSHAVRHLEARLGVRLFNRTTRSVALTEAGEQL 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 LE + + +PSG++RI+ + + L++ L F+ YPDI ++ Sbjct: 68 LLRVRPAVVDLEDALNDAATARNRPSGQIRISASEAAARPLIRHVLPAFVARYPDIHVEF 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + D++ IDI D IR+ + + + + TI A A+P YL P Q+L Sbjct: 128 VTDSRLIDIVEHGFDAGIRVHEDVPRDMIAVKFGDTIRFVAVASPDYLSRHALPARPQDL 187 Query: 187 DKHNLITF 194 H I + Sbjct: 188 VDHRCIRY 195 >gi|330010623|ref|ZP_08306849.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|328534448|gb|EGF61043.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 310 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 115/264 (43%), Gaps = 10/264 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D+ L++F V + SF+ A + +S S ISR I LE +G +LFYR+ R + TE Sbjct: 6 SVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G E+ + Q LQ+ + P G +RI + GQ + L E +P Sbjct: 66 AGRFFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q L+L + ID D D R+ + + R + + A+P Y+ P Sbjct: 126 LQFDLMLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 S + L +H + +G WL + + P + N+ +++ + G Sbjct: 185 SPEALHQHRTLVYG----GSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGV 240 Query: 240 GIALLPDYIVKD---NPNLVRIME 260 GI L PD++V N LV +M+ Sbjct: 241 GIVLFPDWMVSGALHNGTLVTLMD 264 >gi|295699371|ref|YP_003607264.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438584|gb|ADG17753.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 318 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 98/182 (53%), Gaps = 1/182 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F + + SFT AAE L++ +++ + + LE +G L R R L++T +G+ + Sbjct: 8 MRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTALLVRTTRRLSITPEGAAYY 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +++ ++ + ++ S+ +G+LRI + ++ +L EF LYP++ + + Sbjct: 68 ERCAQILADIDEMEASIRNSTDNLTGRLRIEMPSAVASAIVLPSLDEFHTLYPNLDLAIG 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + N+ +D+ + DC+I+L + + S+L+ R+L T+ A+P YL P + EL Sbjct: 128 VSNRTVDMVSEAIDCSIQLGE-LPDSNLVARQLGTLDQVTCASPGYLARHGSPADLDELR 186 Query: 188 KH 189 H Sbjct: 187 AH 188 >gi|254503124|ref|ZP_05115275.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] gi|222439195|gb|EEE45874.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11] Length = 306 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 1/188 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F VA++ S T A L L ++++R++ LE ++G +L +R AR LT +G Sbjct: 3 DDIALFVHVAQARSLTGAGAALSLPAATVTRRLQRLEDKLGHQLVHRSARKFGLTSEGEA 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + E T L + SG L +A ++ LQ F+ +P I++ Sbjct: 63 YFQAFAGIVEQAEVTARNLSAEMHELSGPLVVAAPTNISVGALQPMWTAFMRRHPGIRLD 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L N +ID+ D D A+R+ P Q L Q+K+ +I AAP YL+ P + Sbjct: 123 LRLSNFNIDLLEDRIDLALRI-GPQQDQRLYQKKMGSISTAVMAAPSYLEGGNMPEGPND 181 Query: 186 LDKHNLIT 193 L++H +I Sbjct: 182 LERHAIIA 189 >gi|15595379|ref|NP_248871.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|254243290|ref|ZP_04936612.1| hypothetical protein PA2G_04098 [Pseudomonas aeruginosa 2192] gi|9946015|gb|AAG03571.1|AE004456_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126196668|gb|EAZ60731.1| hypothetical protein PA2G_04098 [Pseudomonas aeruginosa 2192] Length = 310 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 10/187 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ F A +GSF AA +L L+ + + + ++ LE+ +G++LF R R LTLTE G Sbjct: 6 NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG--- 62 Query: 67 HRVTSEVYHKLETTQIELQE-SSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R EV LE Q L SSV +PSG L+++ + G++ + L EFL YPDI Sbjct: 63 ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180 DN+ +D+ + D AI + ++ R L H+ A+P YL++ R P Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFEL-PPGVVARNLTPGHLILLASPTYLRDKPPIRHP 181 Query: 181 LSIQELD 187 + D Sbjct: 182 GDLGGFD 188 >gi|322835119|ref|YP_004215146.1| LysR family transcriptional regulator [Rahnella sp. Y9602] gi|321170320|gb|ADW76019.1| transcriptional regulator, LysR family [Rahnella sp. Y9602] Length = 295 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 25/299 (8%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DKLR VF V +G+F+ AAE+L +S + + I LE + +L R R +LT+ Sbjct: 2 DKLRNIEVFISVVETGNFSTAAEKLGISAVMVGKHIQQLEKYLNARLLQRTTRKQSLTDA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + V +++ T+ ++ P+G LRI+ + LG +++ L +L + + Sbjct: 62 GEVFYENGKRVLEQMKFTESAMESLQSVPTGLLRISAPVSLGSSVVAPMLARYLQKHSKV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++LIL N +D+ + D AIR+ + I L+ + L M A+ YL+ P + Sbjct: 122 NVELILSNARVDLIAEGFDAAIRIGE-IGDDRLVAKPLNPYEMVICASADYLQRFGTPAT 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235 ++L H C+ W LA +R ++ V++ ++ Sbjct: 181 PEDLKTH----------PCLVHTVWNQSEGWHLANAERTTSAWPVNSRYVSNDGHALRAA 230 Query: 236 VL-GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 L G+G+ L P ++ ++ L+ ++E I V+ Y + KL + NF+ Sbjct: 231 ALEGTGLLLQPKVLLAEDIASGKLIPVLESFIPKPRAVHLVYLPDFRPRAKLTSLINFM 289 >gi|294138913|ref|YP_003554891.1| LysR family transcriptional regulator [Shewanella violacea DSS12] gi|293325382|dbj|BAJ00113.1| transcriptional regulator, LysR family [Shewanella violacea DSS12] Length = 297 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 8/288 (2%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++ VF V GS T AAE+L +S+S +S+ + LE +L R R + LT+ G Sbjct: 8 RMLVFANVVEQGSLTAAAEELGISRSMVSQHLKKLELRCETQLIQRTTRKMGLTQDGQNF 67 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +E+ + + + +++ G +RI + G++ L ++ EF LYP I+I + Sbjct: 68 YYYCAELLQLAKQAENSTRPDNIELHGNIRILAPVCFGEHDLLQHMGEFHRLYPKIRISI 127 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L++ +D+ + D AI+ + + KL + A+P YL+ PL L Sbjct: 128 QLEDSPMDLKDNKIDIAIQTGARM-DPRIDAIKLAQFDEYLVASPEYLEQHGSPLHPDML 186 Query: 187 DKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 H ++ + +PK + N + P +C NS L +M G GI +LP Sbjct: 187 QMHLWVLQASNQLPKRYQIQNSYGDNFKLNINPSTTC---NSNLGVMSLVKQGLGIGILP 243 Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+ + + +LV I+ D +Y +P K++AF +FI Sbjct: 244 SYLAQPQIASKHLVHILSDYHLQEGLIYATHPFNDVIPPKVQAFIDFI 291 >gi|254821142|ref|ZP_05226143.1| Regulatory protein, LysR:LysR, substrate-binding [Mycobacterium intracellulare ATCC 13950] Length = 310 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 138/292 (47%), Gaps = 11/292 (3%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + FD D L VF V S + AA L + +S++SR++S LE ++GIKL ++ LT+T Sbjct: 9 LPFDLDALLVFGKVVECRSLSKAAALLGMPKSTVSRKLSKLEADLGIKLLRKNTHQLTVT 68 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 + G K++ + + + ++ S ++P G+LR+A + +G + +FL YP Sbjct: 69 DLGEKIYSHGVNILAEANGVRALVEGSKLEPQGELRVAIPVFVGIDYASRVGAKFLKQYP 128 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++ + L + + D D P+Q S+LI RK+ ++ + A+P +++ EP Sbjct: 129 QSRLDIRLVDNVVHPVHDGFDVVFG-TGPLQDSTLIARKVFSLELFLCASPEFIRELPEP 187 Query: 181 LSI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 ++ +LD I G + + R P + + N++ QY + G Sbjct: 188 ITAPTQLDTVPFIDCG--VSEGPRRLTVAKNKRRHELSPTVRA-RANNFQVCKQYILNGL 244 Query: 240 GIALLPDYIV-----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 G+ +P I+ +D ++V ++ + VY +P L + + AF Sbjct: 245 GVGAMPSQIIVTSELRDG-SIVPVLPEWRLEQLDVYMIHPFQLSFSTLISAF 295 >gi|325168409|ref|YP_004280199.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064132|gb|ADY67821.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 304 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 15/265 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LR F VA +GSF+ AA L+Q ++SRQ+S LE +LF+R L+LT +G ++ Sbjct: 6 ALRTFLRVAETGSFSAAALDCGLTQPAVSRQVSSLEEHYSTRLFHRSTNALSLTVEGEQM 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +V +E SGK+RI+ LG + L FL P + + + Sbjct: 66 ISMAQKVIDAVEALGEAAFADGAVASGKVRISLPAALGL-YISDRLPAFLASCPGLSVDI 124 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + + D+ + D +RL + + SSLI R++ A P Y++ P + E+ Sbjct: 125 VFCEQSSDLIGEGIDLEVRLGE-VSDSSLICRRIGWTAAFLVATPSYIQRRGTPGHLLEI 183 Query: 187 DKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 H+ I + + E +W A ++R PR + N+ ++ + + G G+A Sbjct: 184 PDHDCICYN----RGGEGRSWSFLNGADIERVKVTPR---MIFNNTGAVHRAALAGGGLA 236 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF 267 +L +V D+ R+++ + P+F Sbjct: 237 VLSHILVGDDIAAGRLVK--VMPAF 259 >gi|254712036|ref|ZP_05173847.1| LysR family transcriptional regulator [Brucella ceti M644/93/1] gi|254715105|ref|ZP_05176916.1| LysR family transcriptional regulator [Brucella ceti M13/05/1] gi|261216813|ref|ZP_05931094.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261319680|ref|ZP_05958877.1| transcriptional regulator [Brucella ceti M644/93/1] gi|260921902|gb|EEX88470.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261292370|gb|EEX95866.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 306 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F V +GS + AA L LS + +S+++ LE +G +L R R + LTE G H Sbjct: 8 MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + +E + + S G L+I+ G+ + L F+ D+ + + Sbjct: 68 ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHITPYLVPFMRANADLTVNMQ 127 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +DI D D AIR+ + + S+L+ R+L + AAP YLK P +I++L Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H + + P +E V RP G LQ S + + + G GIA + Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTKSSEIVREAVLAGLGIAQRSTW 240 Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V LV+++ D + + ++ YP K++ F +++ Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287 >gi|212709072|ref|ZP_03317200.1| hypothetical protein PROVALCAL_00105 [Providencia alcalifaciens DSM 30120] gi|212687984|gb|EEB47512.1| hypothetical protein PROVALCAL_00105 [Providencia alcalifaciens DSM 30120] Length = 314 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 138/289 (47%), Gaps = 16/289 (5%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + +RVF VAR SF+ AAE L +S + IS++I LE +G LF+R+AR + LT +G Sbjct: 8 EDIRVFVTVARLMSFSQAAELLLVSPAYISKRIKLLEENLGQTLFFRNARAIQLTPEGKI 67 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + R + + +LE Q ELQ + G+LRI+ + G L + YP + I Sbjct: 68 VLRSSELLLEELERMQGELQACRDEIRGELRISCSTGFGSTYLNPFILALRADYPILGID 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ IDI + D I + I S I R+L + A+P Y++ +P QE Sbjct: 128 LTLTDRSIDIISENIDLDICIGGTI-SDQFIARRLARNNRVLCASPAYIQKYGQPSLPQE 186 Query: 186 LD-KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L+ KH+ I + + W L + S L VN+ Q+C+ G GI L Sbjct: 187 LEQKHSCIAIKE---RNQAPAIWKLEHQQESMTITPNSKLMVNNGEVAKQWCLSGEGILL 243 Query: 244 ------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 LP+ + LVR++ + V+ Y +L+N+ L+ F Sbjct: 244 RSLWSVLPEL---QSGKLVRVLPQWHQGA-DVFAVYSRSLRNSASLRVF 288 >gi|33600934|ref|NP_888494.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33568534|emb|CAE32446.1| putative LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 306 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 29/296 (9%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F V AR SFT AA++L ++Q ++S+Q+ LE VG++LF R +GL LTE G Sbjct: 11 LQAFEVAARHNSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAGRSYL 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++E +EL + G L + G L L F L PDI ++ + Sbjct: 71 KKIRAGLGQIEAATLELIAHQGR-GGTLHLTAMPTFGARWLIPRLAAFRRLRPDIHVEFL 129 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE---P 180 + D S D A+R + I S ++ R +V + C E P Sbjct: 130 PHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGRDVVPV-------------CSERLVP 176 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238 Q D +L+ + L+ W ++ + R + + + Y + Q G Sbjct: 177 GGCQ--DAADLLAY-PLLHHTSAMEGWREWFEQAGCDTRRSLEGARFDQYSLLSQAAAAG 233 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIF 291 G+AL+P +++D ++ + P Y CYPE ++ L+AFR ++ Sbjct: 234 FGVALIPRCLIEDELRDGKLHVPIQLPIRARQGYYLCYPEQKASSPTLQAFRGWLM 289 >gi|313106300|ref|ZP_07792544.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310879046|gb|EFQ37640.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 303 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 14/294 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ F V GS + AA+ L +++ +S + LE E+G+ L R R + LT+ G Sbjct: 5 DRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAGEC 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ +V + + + + G LR+ TT + G L L+ F L+P +Q+Q Sbjct: 65 FYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQ 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + D+ + D AIRL + ++ S+ +L + + A A+P L EP Sbjct: 125 LSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDL 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239 L G + + W V P G PR L ++ ++ + + G Sbjct: 184 ESLERLQNLGH--SRLADSLPW--QVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGL 239 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 GIA+LPD++V+ + L R++ D P V+ YP K++AF +F+ Sbjct: 240 GIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFL 293 >gi|294665290|ref|ZP_06730583.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604926|gb|EFF48284.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 304 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 7/289 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + +F V GS T A L LS + S+++ LE E+G++L +R R L T +G + Sbjct: 5 DDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQR 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L + L+ +L+ES+ G LR+ + G+ + L EF +P ++I Sbjct: 65 LAERGRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRIS 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ P++ S L+ R++ A+P YL+ P + E Sbjct: 125 AHLSDDLVDLVKQGFDLAIRI-GPLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPDE 183 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244 L +H + + +D L T D + R+ S + N + V G GIA+ Sbjct: 184 LAQHAGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAVH 241 Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + D + LV++M D P+ + P +++AF +F+ Sbjct: 242 SYWHIADELRSGRLVQVMPDYPPPASQISAVMPARRLQPPRVRAFVDFL 290 >gi|283784873|ref|YP_003364738.1| LysR family transcriptional regulator [Citrobacter rodentium ICC168] gi|282948327|emb|CBG87912.1| putative LysR-family transcriptional regulator [Citrobacter rodentium ICC168] Length = 316 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 10/284 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F + +GS + AA QL+ +Q++ISR++ LET +G+KL R + LT+ G + + Sbjct: 18 MRTFVRIVEAGSLSAAARQLNTTQATISRRLQSLETMLGVKLVLRTTHAMKLTDDGERGY 77 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + L P G LR+ GQ L L FL YP++ ++ + Sbjct: 78 QHAKRIIDAWLALEDGLNVVEDDPVGTLRVRAPHAFGQQQLLSPLLSFLARYPNLSVEWM 137 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L++K +D D DCAIR+ + ++ + L + A P L S ++L Sbjct: 138 LNDKTVDFLRDNIDCAIRVGAEVDPAT-VSVLLAEVPRSVVATPELLARHPRISSPEQLS 196 Query: 188 KHNLITFGDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 I + + V PI PR+S +S + G G+A++ Sbjct: 197 TLPWIALNTFYQHSVSLSHRHSREAVSLPIA-PRLST---DSIYVARNAALAGLGVAIVS 252 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 + V ++ LV ++ D V+ YP A +L+ F Sbjct: 253 SWTVAEDIAAGRLVELVADWQAAPLPVHLVYPWARYYPTRLRRF 296 >gi|206576879|ref|YP_002238101.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] gi|206565937|gb|ACI07713.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342] Length = 288 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/275 (23%), Positives = 128/275 (46%), Gaps = 17/275 (6%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DW L F+ +AR GS + AA +L + +++ R+I+ LE+ +G++L R R TLT Sbjct: 1 MDWQDLHFFFALARCGSLSAAARELGVDHATVGRRIAALESSLGLRLTERLPRRTTLTGH 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + E+Y + +I+ + +P+ + I+ + + +L+ + F +P I Sbjct: 61 GRIIASGADEMYRIADRIRIQARSLCAEPAVPINISASPAVAAHLIAPAIAGFTRKHPGI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L + + ++ AD A+RL +P L+ R++ T+ YA+ + Sbjct: 121 TLSLSGVSHHVLLNKSEADIAVRLERP-DDPDLMTRRIGTMRFGLYASQFW--------- 170 Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 QE+ + + + D + WL + + R + + ++ Q G GI Sbjct: 171 -QEIPQEDWVFIAYDSTLAHVTQQQWLES----LLNGRRVIFRASDLMAQQQAARKGLGI 225 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPE 275 LP ++ ++ LVR+ E++ +P ++ YPE Sbjct: 226 VTLPCFMGDNDSELVRLPENLPSPVRNIWLVAYPE 260 >gi|36958597|gb|AAQ87065.1| possible transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 307 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 24/301 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LR F VA +GSF+ AA L L+Q ++SRQ+S LE + +L +R + LT +G ++ Sbjct: 10 ALRTFLRVAETGSFSAAAVDLDLTQPAVSRQVSALEAHLNTRLLHRTTSAVALTAEGEQV 69 Query: 67 ----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 RV V ETT E +SV SGK+R+ LG + L L +P + Sbjct: 70 IPMALRVVEAVDALGETTCAE--GASV--SGKVRLTLPAPLGL-YVSDRLTGLLANHPGL 124 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++I + D+ + D +RL P+ SSL+ R+L AP YL+ P + Sbjct: 125 SVEMIFREEPSDLVGEGLDLEVRL-GPVADSSLVCRRLGWTTAFLVGAPSYLRERVAPET 183 Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +L H I + GD D +V RI+ L N+ +++ + + G Sbjct: 184 PNDLRAHECICYSRAGDARTWSFSDGADEVSV-------RIAPRLIANNAVAVHRATLAG 236 Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 SG+A+L +V + LV +M D + YP +++ +F+ R Sbjct: 237 SGLAVLSHILVCPDIEAGRLVNVMPDFPPTRLPINVVYPSRRNMPPRVRVALDFLVEAVR 296 Query: 296 D 296 + Sbjct: 297 E 297 >gi|71281959|ref|YP_269996.1| LysR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71147699|gb|AAZ28172.1| transcriptional regulator, LysR family [Colwellia psychrerythraea 34H] Length = 316 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 102/174 (58%), Gaps = 1/174 (0%) Query: 14 VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73 V+ GSF +E ++++S+IS+QI LE E+G+ L R R L+LT GS++ ++ Sbjct: 13 VSELGSFVKVSELRNVNRSAISKQIGKLEKELGVHLLNRTTRSLSLTAAGSEMVNQAKQL 72 Query: 74 YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133 L ++ + +P G+L+I+++ G+ +Q + +F YPDI+I+L+L+++ + Sbjct: 73 RDLLNNSKRLAENYHSEPRGELKISSSTLFGRQYVQQAVLKFQAQYPDIRIELLLEDRIV 132 Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ + D R+ +P + S+LI +++ + AAP +++ +P +I +L+ Sbjct: 133 DLVGEGFDIGFRIGEP-KESNLIAKQIAQNRLLIVAAPSFIEKHGKPTTIPKLE 185 >gi|213966912|ref|ZP_03395062.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] gi|301381595|ref|ZP_07230013.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato Max13] gi|302059651|ref|ZP_07251192.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato K40] gi|302131902|ref|ZP_07257892.1| transcriptional regulator, LysR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928234|gb|EEB61779.1| transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato T1] Length = 304 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 87/179 (48%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +AR SF A ++ +S S++S + GLET +G++L R R +TLT G +L + Sbjct: 14 FLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGVRLLNRTTRSVTLTAAGEELQGLI 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 S + + L +P+G++R+ D + LL L F+ YPDI++ L + N Sbjct: 74 SAPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFIDRYPDIEVDLTVTN 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 K +DI D D IR + + QR + AP YL+ P ++L +H Sbjct: 134 KMVDIIGDGHDAGIRFGGTVPEDMIAQRLSPDVAWAVVGAPAYLQRFGTPKHPEDLHQH 192 >gi|78065057|ref|YP_367826.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77965802|gb|ABB07182.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 306 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 11/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V SF+ AA +L ++ SS++R+I LET++GI+L +R L TE G L+ Sbjct: 9 LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L Q +L +PSG LR+ G+ L L F+ +P +Q+ L+ Sbjct: 69 GRATRMLAELRGLQEDLHSQHAEPSGLLRVDCPAPFGRRHLMAALAAFMQRHPALQVDLV 128 Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L + +D+ D A+R+ P++ + + L A+ YL EP S Sbjct: 129 LTDSMVDLQGARLGSDVDLAVRI-GPLEDTRFVATVLAPQRRVLCASAAYLARRGEPESP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H+ + + P F V +PR + N ++++ + G G+A Sbjct: 188 DALAGHDCLAWHGAPPPGAWRFGERRHVP---AQPR---FRSNHSEALLEAAIDGLGLAH 241 Query: 244 LPDYIVKD 251 LP ++ D Sbjct: 242 LPTWLAGD 249 >gi|146343678|ref|YP_001208726.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196484|emb|CAL80511.1| putative transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS278] Length = 312 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 24/304 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V +GSFT AA L + +SS++RQI+ LE ++G+ L R R L LT+ G Sbjct: 7 VRVFLEVVSAGSFTTAARTLKIPKSSVARQIARLEDDIGVMLLARTTRTLELTDHGRTFL 66 Query: 68 RVTSEVYHK-LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + +E + + ++ SG L + + G+ L +L F +P+I++ L Sbjct: 67 PYARRLLDDGIEASNV-IRSHRDGASGLLTVTASSTFGRMFLAPHLSTFRKQHPNIRVDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + I + AD AIRL PI +L + + AAP Y+K +L Sbjct: 126 KLTATKLVIGVGQADIAIRL-GPIVDPNLGVQSFGRMEFCLVAAPAYMKGRPSVTKPMDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240 +H LI +L P ++ L + ++ C++ + I C+ G Sbjct: 185 ARHELI---ELRPPASDNQLELHK------DGKLQCVRCVPAMVIDDPDTAKVVCLTAGG 235 Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294 IA +P ++V + + LVRI+ D + Y + + + +++A+ F+ + Sbjct: 236 IATVPTFLVANEIRDATLVRILPDWTLAPAPISVVYAKQIAPSLRVRAYLEFLASTIGQT 295 Query: 295 RDWK 298 R W+ Sbjct: 296 RPWE 299 >gi|238894854|ref|YP_002919588.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547170|dbj|BAH63521.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 310 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 115/264 (43%), Gaps = 10/264 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 S D+ L++F V + SF+ A + +S S ISR I LE +G +LFYR+ R + TE Sbjct: 6 SVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G E+ + Q LQ+ + P G +RI + GQ + L E +P Sbjct: 66 AGRLFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +Q L L + ID D D R+ + + R + + A+P Y+ P Sbjct: 126 LQFDLTLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 S + L +H + +G WL + + P + N+ +++ + G Sbjct: 185 SPEALHQHRTLVYG----GSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGM 240 Query: 240 GIALLPDYIVKD---NPNLVRIME 260 GI L PD++V + N LV +M+ Sbjct: 241 GIVLFPDWMVSEALHNGTLVTLMD 264 >gi|241206048|ref|YP_002977144.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859938|gb|ACS57605.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 302 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 17/294 (5%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D +RVF V SFT AAE L +S+++ + GLE +G++L R R ++ T G Sbjct: 4 FDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKGLEARLGVRLLQRTTRHVSPTLDGE 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ + +E + + KP G LR+ L ++ + +L FL YP+I+ Sbjct: 64 AYYQRCLSILADIEGAEGAF--AGAKPKGLLRVDVHGTLARHFVLPSLPSFLETYPEIEF 121 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 + ++ +D+ + DC +R+ P S ++ R++ + A+P Y+ P Sbjct: 122 YMSEGDRLVDLVREGIDCVLRVGTP-GDSDMVARRVAMLDEVTLASPDYIATRGLPQHPH 180 Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239 L H ++ F G L+P +F TV R + P + + VN+ S + +G Sbjct: 181 RLAGHRMVGFRSSSTGTLLPL---EFIVDGTV-RNVTIP--ATVAVNAAESYISAARMGL 234 Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 G+ +P Y + + L+ +++D V YP + + +++ F +++ Sbjct: 235 GMIQIPRYHAEKDLAEGTLIHVLQDFPLTPTPVSLLYPRNRQLSPRVRVFIDWL 288 >gi|121606585|ref|YP_983914.1| LysR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595554|gb|ABM38993.1| transcriptional regulator, LysR family [Polaromonas naphthalenivorans CJ2] Length = 321 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 28/293 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L F V GS T AA ++ + + R++ LE +G+KL R R +TLT +GS Sbjct: 6 QLESFVSVVARGSLTAAALAEGVAPAIMGRRLDALEERLGVKLLVRTTRRITLTHEGSAF 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + L + + VK SG LRI G+ + + +F + D+ I L Sbjct: 66 LEDCQRLLADLANAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVAKFREQHADVTITL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ +D++ + DCA+R+ + SSL+ +L A P YL+ P EL Sbjct: 126 NLGDRVVDLAGEGFDCAVRV-GDLPDSSLVSVRLADNRRLCVATPRYLQLHGTPRHPGEL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCL---QVNSYLSIMQ--------- 233 K + +T L + + W V R G R L QV+ I+ Sbjct: 185 AKFDCLT---LSSEASQTRGWAFRVPRNAQGRQREGVLADAQVDGDSEIIHLKPGGPLDC 241 Query: 234 --------YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275 +C+ G GIA + V+ LV ++ED P+ +Y +P+ Sbjct: 242 SDGQVLHDWCLAGYGIAWRSTWEVESEIAAGRLVAVLEDFAAPANGIYAVFPQ 294 >gi|121594680|ref|YP_986576.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gi|120606760|gb|ABM42500.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 317 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 20/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F VA G F A L + +S +SR+++ LE +G++L R R L+LTE G Sbjct: 3 DLNDMLYFAEVAERGGFAAAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRTLSLTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R + + Q + + +P G +R+ + L Q ++ + +FL +P ++ Sbjct: 63 EAYLRHCQAMLDSAQAAQDTVDQVQTEPRGTVRVTCPVTLAQTVVAELMPQFLQRHPQVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ + N+ +++ + D A+R+R ++ S S++ ++L + + A+P L+ P S Sbjct: 123 LEMQVTNRVVNVVEEGVDVALRVRPTLEDSGSMVVKRLDEVRLLLVASPEQLRRQGTPTS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235 +++L D + D + P G PR + L++ Sbjct: 183 LRDL------ALLDTLAMSAADGRASLRLIGPEGREETVHFTPRYVA---DDLLTLKFAA 233 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+G+ +PDY+ LV ++ P V+ + + +++F +F+ Sbjct: 234 LAGTGLCWMPDYMCMSELQEGRLVHLLPQWTQPRSVVHAVFASRRGLSPAVRSFLDFL 291 >gi|119946957|ref|YP_944637.1| transcriptional regulator, substrate-binding, LysR family protein [Psychromonas ingrahamii 37] gi|119865561|gb|ABM05038.1| transcriptional regulator, substrate-binding, LysR family protein [Psychromonas ingrahamii 37] Length = 306 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 9/250 (3%) Query: 1 MSFDWDKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57 M +++L+ V AR GS + AA+ + LS++ +S I LET + IKL R R + Sbjct: 1 MDISFEQLKSMIVFARVVEQGSLSAAAKHIGLSRAVVSYHIKKLETHLAIKLLNRSTRSI 60 Query: 58 TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117 TLTE GS+ ++ + + +++ +P G L+I ++LG ++ L F Sbjct: 61 TLTEAGSQYYQRCRVIAEQASAAHQQIENLKNEPEGLLKITCPVNLGLQIIVPALNAFRK 120 Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177 LYP I + L L ++ +++ + D A+R P+ S L KL ++ AP Y K Sbjct: 121 LYPKIDLDLKLTDEVVNVIKEGIDLAVR-GAPLPDSGLQASKLFSLSTCLCGAPAYFKKH 179 Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237 P S +L H + + L +E L+ +R + N+ + + Sbjct: 180 GYPTSPAQLTAHEWVIY-KLTSSTIE----LSKGNRSFSIKVKGGISTNNAAARTAFVEG 234 Query: 238 GSGIALLPDY 247 G G+ +P Y Sbjct: 235 GHGLGRIPTY 244 >gi|170720415|ref|YP_001748103.1| LysR family transcriptional regulator [Pseudomonas putida W619] gi|169758418|gb|ACA71734.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 305 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/287 (21%), Positives = 133/287 (46%), Gaps = 8/287 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F+++A+ GS A +L ++ ++S++++ LE +G++L R R ++LT +G Sbjct: 7 LGFFHLLAKQGSLAATARELGVTPPAVSKRLAALEARLGVRLVNRTTRSMSLTAEGELYV 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +++ + + +P G +R+ ++ G+ + L +F YPDI++QL Sbjct: 67 AHAARILAQVDEVEQLIGRHRAEPKGLIRVNASLGFGRRYIGPALADFYARYPDIEVQLE 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D++ D IR + +S RK+ + A+P YL+ P + +L Sbjct: 127 ISDHPLDLASHGFDLGIRF-GTLPDASFHARKIASNRRLLCASPLYLEKHGAPTKLSDLA 185 Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +HN I + P + F + +SC N + + + G GI L + Sbjct: 186 RHNCIFLRQNESPYGVWTFTNGGRTQNIKVQGALSC---NDGEVALNWALQGHGILLRAE 242 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + + L ++ED VY YP+ L + +++ +F+ Sbjct: 243 WDIARYVRSGRLRLLLEDQTPTRADVYAVYPQQLHLSARVRRLIDFL 289 >gi|170725685|ref|YP_001759711.1| LysR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169811032|gb|ACA85616.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC 51908] Length = 313 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 138/290 (47%), Gaps = 9/290 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + + +F VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L R R L+LTE G Sbjct: 6 EPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 L+ E+ + + + G L++ + G + L EF+ +P++++Q Sbjct: 66 LYTQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMTTHPELELQ 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + L + +D+ + D + + + + ++ R L+ A+P Y++ +P ++ Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPDYIEKHGQPDRPEQ 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244 L HN + + + E W E +S +V++ ++ V G G+ L Sbjct: 185 LVDHNCLVYQG---EWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241 Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290 Y+++D LV ++ED +T + YP K+ AF +FI Sbjct: 242 ASYLLEDEIAKGTLVPLLEDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291 >gi|187478146|ref|YP_786170.1| LysR family transcriptional regulator [Bordetella avium 197N] gi|115422732|emb|CAJ49260.1| LysR-family transcriptional regulator [Bordetella avium 197N] Length = 303 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 121/269 (44%), Gaps = 13/269 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F VA++ +F+ AA+ L + +S++SRQ+S LE VG++L R R + LT G Sbjct: 1 MELFVEVAKTRNFSRAADNLGIPKSTLSRQVSELERAVGLQLLSRTTRKVELTAAGQLYF 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + ELQ+ PSG LR+ D G + + EF YP++ L Sbjct: 61 DRCQRIVTEAQAAHEELQKLLETPSGPLRVNLPADFGTEFMAESFVEFSRRYPEVDFYLD 120 Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + + + D A+++ + + S+ I R L + YA+P YL PL +L Sbjct: 121 LASPEHAERVFRSCDVALQIGE-LPDSTQIARLLGMLPAGLYASPDYLDRHGRPLHPDDL 179 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241 KH + F + W T G+ + VNS + LG+GI Sbjct: 180 AKHECLEF--RVGHAGRVTRWPLTN----GQQQFEITPGRRYSVNSVSMLRSLARLGAGI 233 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVY 270 A+L +D +L +++ D F VY Sbjct: 234 AILAARHCEDGESLEKVLPDWHAGPFPVY 262 >gi|330811280|ref|YP_004355742.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379388|gb|AEA70738.1| Putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 293 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 133/281 (47%), Gaps = 7/281 (2%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 DWD L+VF VA+S + T A L +S S++SR+I+ LE +G LF + G LTE Sbjct: 1 MDWDDLKVFIFVAKSNNVTEAGISLKVSTSTVSRKIAALEESLGTVLFSKKTSGYFLTEA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L + E + + + ++ + + +G++RI +G +L+ L F +P+I Sbjct: 61 GRALLPLALETEERFKLIERQMSQPGDRMAGQVRIDCPELMGTHLIIPQLAVFHDQHPEI 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I ++ ++D IRLR+P ++ + R++ T+ + + Y P Sbjct: 121 SFDFINSAVSSKLTQSHSDIIIRLRRP-ENGNFTMRRVGTLKQGLFCSQAYADANGLPAE 179 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H+LI + + + M WL + G+ R+ ++V++ + ++ GIA Sbjct: 180 PADLKHHSLIGWTEEM-SYMPLAQWL---NEMAGDQRL-WMRVSNLNAQLKAVEANLGIA 234 Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283 LP Y V L +++ + S ++ +A + ++ Sbjct: 235 ALPIY-VGHQSGLCQVLANRRARSSEIWLLRNQATQGVSRV 274 >gi|330808821|ref|YP_004353283.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376929|gb|AEA68279.1| putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 301 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 88/184 (47%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VAR SF+ A ++ +S S++S I GLE +G++L R R +TLT G +L + Sbjct: 14 FLAVARHSSFSRAGVEVGISASALSHAIKGLEARLGVRLLNRTTRSVTLTAAGEELLALI 73 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 SE K++ L + +P+G++R+ D LL L F YPDI++++ N Sbjct: 74 SEPVDKIDQAIELLNKFRDEPTGRIRLNVFSDAALLLLAPVLSTFAHRYPDIEVEVSTTN 133 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 +DI D IR + + Q + P YL C PL ++L +H+ Sbjct: 134 SMVDIVEGGFDAGIRYGATVPEGMIAQSLSPPVRWVVVGTPDYLDRCGMPLHPEDLKQHS 193 Query: 191 LITF 194 + F Sbjct: 194 CLRF 197 >gi|293606621|ref|ZP_06688977.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] gi|292815006|gb|EFF74131.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] Length = 315 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 12/263 (4%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR +F ++++ SF+ A Q +S +S+SR I+ E E+ +KL R R + LTE Sbjct: 2 DRLRAMELFLSISKTESFSETARQFGVSATSVSRMITEFENELNVKLLLRSTRQVVLTEA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + + E P G LR+ + + G +L + F YPDI Sbjct: 62 GQEYAQQLESILWNINEAHRNITEIRAAPKGILRVHSRMMFGLGVLPPLVAAFRQQYPDI 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 I+L+L D+ + D R+ P++ + L +R L A+P YL P Sbjct: 122 HIELVLSEAKTDLRRNNFDIDFRISPPVE-AGLKRRILFKSERFLVASPAYLAKHAAPAK 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241 ++ +H+ + + L+P + + W I E I V N+ +++++ +LG GI Sbjct: 181 PGDIAQHDCLAY--LLPG--DQYCWRFKQGEAIEEVLIKPRHVTNNGVALLELALLGEGI 236 Query: 242 ALLPDYIVKDN---PNLVRIMED 261 ALL DY V ++ LVR+ D Sbjct: 237 ALLDDYTVHNDISRGTLVRLFPD 259 >gi|289627720|ref|ZP_06460674.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649504|ref|ZP_06480847.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866270|gb|EGH00979.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 302 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 130/279 (46%), Gaps = 9/279 (3%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F + SGS + AA+ S +S+ R ++ LE+ +G++L R R + LT++G + R T Sbjct: 10 FVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDEGEEYLRWT 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + + L G LR+ ++ GQ + + FL + +I ++L L++ Sbjct: 70 RRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLCEHQNINVELNLND 129 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + + + + D A+R+ + S+++ R+ + + A+P YL+ + + L +H Sbjct: 130 QIVPLLDERLDLALRIGH-LPDSAMVARRTGATRLVSCASPGYLRTAPLLDTPKSLPEHA 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 IT + + I PR+ C QV + CV G G+ L Y V Sbjct: 189 CITLASHGRQWYFRHQGKELIQDII--PRLVCNQVRAA---SLACVQGLGVTRLMHYQVA 243 Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 D + L+R++ D T + YP AL+ + ++KAF Sbjct: 244 DELADGRLIRVLTDFETADLPIQLVYPHALQLSPRVKAF 282 >gi|294012147|ref|YP_003545607.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292675477|dbj|BAI96995.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 302 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 122/264 (46%), Gaps = 13/264 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D+D +F + G A +L +S + +S+++ LE +G +L +R R L LT Sbjct: 1 MDPDYD---LFATIVDEGGMAAAGRRLSISPAMVSKRLVRLEERLGTRLIHRTTRRLALT 57 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 G +LH + LE + + +S + +G LR++ G+ + L FL +P Sbjct: 58 PAGERLHEDLRAIMAALEEAERRVSGASAEAAGTLRVSAPTSFGRMHVAPYLGRFLEAHP 117 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +++++ L + D+ AD AIR+ S L +L T AAP YL P Sbjct: 118 KVRLRIDLSDDYADLLATRADLAIRITAD-PGSGLAAHRLATNRRVLCAAPDYLARFGVP 176 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++ +L +H L+ +P + ATV+ G+ S ++ NS + + + G G Sbjct: 177 ETVPDLRRHRLLAADGQLPWRLIGPKGAATVE---GD---SHVRTNSSEMVRELALSGVG 230 Query: 241 IALLPDYIVKD---NPNLVRIMED 261 IAL + + D N+ ++M D Sbjct: 231 IALRSLWDISDALERGNVRQVMPD 254 >gi|238792503|ref|ZP_04636136.1| transcriptional regulator [Yersinia intermedia ATCC 29909] gi|238728138|gb|EEQ19659.1| transcriptional regulator [Yersinia intermedia ATCC 29909] Length = 317 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 3/192 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 ++ VF V +GSF+ A QL +S S+ISR +S LE + +L +R R L L+E G + Sbjct: 11 SEMAVFVKVVETGSFSVVARQLGVSPSAISRSVSRLEKALATRLLHRTTRKLRLSESGEE 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + + + + + +P G +RI+ +G+ ++ ++ EFL + I +Q Sbjct: 71 VFKRCHMMLNAANSVMEVSGQYNQEPEGLIRISVPKAVGRFVVHPHIPEFLRRHSKIDVQ 130 Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 LILD++ +D+ + D +IR+ +P +I R+L+TI A P YL PL Sbjct: 131 LILDDRYVDLIEENVDLSIRITDQP--PPGMIGRQLMTIEHLLCATPEYLSIHGVPLHPH 188 Query: 185 ELDKHNLITFGD 196 +L H+ I G+ Sbjct: 189 DLAHHSCIYLGE 200 >gi|167576744|ref|ZP_02369618.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 300 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 132/298 (44%), Gaps = 22/298 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63 + LR F V AR +F AA ++ ++Q ++++Q+ LE +G++LF R RGL LT G Sbjct: 9 NALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGLA 68 Query: 64 --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 + + R + + T ++ + SSV I+TT L L F +PD Sbjct: 69 YFADVRRALNLIGDA--TDRLAKRRSSVT------ISTTPSFASRWLIPRLASFGDEHPD 120 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 + I++I D++ D D AIR KP L+ R L + +HA +P L Sbjct: 121 VDIRVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSGARA 180 Query: 182 SIQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 ++L L+ DL P+ + A VD P PR + S L+I + G G Sbjct: 181 RARDLAGQVLLHDAHDLWPEFLAALPERAAVD-PAKGPRFN----QSSLAI-DAAIAGHG 234 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 +AL D +V + L R+ + + S Y YP + + ++ +AR Sbjct: 235 VALASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEAWLIREAR 292 >gi|152972539|ref|YP_001337685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957388|gb|ABR79418.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 304 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS + AA L++ +++SR I LE+ +G++L R R LTLT+ G + ++ Sbjct: 17 GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAARRILEEV 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + + +P G+L I+ G+ + + EF+ YP I+++L+L +++ D+ Sbjct: 77 ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRVRLLLSDRNADLVS 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 D+ D A+R+ + SS++ +L T+ + A A P L EP ++L +I Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254 +P F D+ I P + L V + S LG G+A L Y D + Sbjct: 196 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253 Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L ++E+V V+ Y KL+ F +F Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288 >gi|144897675|emb|CAM74539.1| transcriptional regulator, LysR family [Magnetospirillum gryphiswaldense MSR-1] Length = 302 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 137/304 (45%), Gaps = 21/304 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L F V G F+ A L L +S +SR+++ LE +G++L R +R LTE G Sbjct: 3 DLNDLYYFTQVVEHGGFSAAGRALGLPKSKLSRRVAQLEDGLGVRLLQRSSRRFALTEFG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 +R + + E + +Q S +P G +R++ + L Q+ + + FL +P ++ Sbjct: 63 QAYYRHCRAMVIEAEAAEEAVQHSQAEPQGLIRLSCPVALAQSKVGPIIARFLADHPRVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + L N+ +D+ + D AIR+R P++ S LI + L + AP L P S Sbjct: 123 VHLEATNRRVDVIEEGFDLAIRVRMPPLEDSGLIIKVLERHQGYLVGAPDLLDRLGRPQS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVL 237 +L L + G + + + +W G +PR L + +++ Sbjct: 183 PDQLSA--LPSLG--MTRAGDRHSWQLVDAAGEGIEVAHQPR---LVTDDMVALRHAARA 235 Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293 G GI LP +V ++ ++E ++T P ++ YP G + A R F+ Sbjct: 236 GIGIVQLPSLMVAEDLR-AGVLEKILTAWTPPRGLIHAVYP---SRRGLVPAVRLFLDAL 291 Query: 294 ARDW 297 A DW Sbjct: 292 AADW 295 >gi|187918865|ref|YP_001887896.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717303|gb|ACD18526.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 303 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 10/292 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + +F + A SFT AA ++ +++SR ++ LE +G++LF R R + LT+ G + Sbjct: 13 IELFCLAAELESFTEAANAASVTPAAVSRTVARLEERLGVRLFVRTTRQIRLTDAGRRYF 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 +L + E P+G LRI+ G + L EF YP + ++ Sbjct: 73 EQCRLALAQLAEAEREATGQQTAPTGVLRISMPTPYGHYRVLPLLAEFRQRYPGVTVETH 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L N++ID + D AIR P S LI R + + A+P YL+ + + +L Sbjct: 133 LSNRNIDFGEEGFDLAIRGAAP-GDSGLIARTIEDAELVVVASPAYLRGAAKLKTPDDLV 191 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS--YLSIMQYCVLGSGIALLP 245 H+ + + +P + WL V+ + E S +S L+ G+GI Sbjct: 192 HHDCVQYA--LPSTGRNLPWLFKVEDEVVETMTSGGYTSSGDVLAGATLARHGAGIFQTY 249 Query: 246 DYIVKDNPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIFLK 293 +IV+ + +++++ P S YP A + ++++F +F+ K Sbjct: 250 RFIVEKD-IAAGTLKELLIPYGGCSRPFVLLYPHARHLSSRVRSFVDFLMEK 300 >gi|167644427|ref|YP_001682090.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167346857|gb|ABZ69592.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 310 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/297 (22%), Positives = 137/297 (46%), Gaps = 21/297 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + L++F VA SFT AA+ L + + +S + LE +VG L +R R + LTE G Sbjct: 5 EALQIFARVAEMASFTKAAKSLGIHKGRVSTAVRQLEADVGAGLLHRTTRAVQLTEDGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ E + GKLR+ +L ++ L + +F+ +P+++++ Sbjct: 65 FYTRARDLLADAEDLRSMFASEHTSLRGKLRVDLPTELARSTLIPAIPQFMAAHPELELE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 + ++ +D+ + DC +R+ P+ +LI R + + M A+P YL P ++++ Sbjct: 125 ISSTDRRVDLVQEGFDCVVRI-GPVVDETLIARPIGALRMVNAASPAYLARRGTPRTLED 183 Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCVLG 238 L H ++ + + + F W + P G+ S L VNS + + G Sbjct: 184 LVSQGHAIVHYTPTL--GAKPFGW----EYPDGDDYSSLALPGALSVNSVQTYHAAGLAG 237 Query: 239 -----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 +G+A + Y ++ +V+I+ D+ V+F + +++A ++I Sbjct: 238 VGLVQAGLAAMSPYF--ESGEMVQILPDLPPEPLQVWFVVAHRRNMSRRVRALMSWI 292 >gi|91782924|ref|YP_558130.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686878|gb|ABE30078.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 301 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 5/191 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 +++ VF VA++GSFT AAE++ S+S++ + + LE +G +LF R R + LTE G Sbjct: 10 NEIAVFVAVAQTGSFTRAAEEIGSSKSNVGKAVQRLEARLGSQLFQRTTRAVRLTEDGET 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQG--NLKEFLLLYPDIQ 123 E L + +L +P+G+++I G+ LL L+E YP + Sbjct: 70 YLLAAQEALESLREAEQQLASRRAEPAGRVKIDLPAGFGRLLLPSFIQLREK---YPKLT 126 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 +++ L ++ D + D +R+ S RKL + + YA+P YL + ++ Sbjct: 127 VEMALTDRMSDPVGEGWDIVVRIGALPDDSEFTVRKLCDLRLGLYASPEYLARRGDVKTL 186 Query: 184 QELDKHNLITF 194 EL H+ I F Sbjct: 187 AELTDHDAIVF 197 >gi|332993483|gb|AEF03538.1| LysR family transcriptional regulator [Alteromonas sp. SN2] Length = 300 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 125/286 (43%), Gaps = 7/286 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF A+ GSF AAEQL +S +++R I+ LE ++ +LF+R R + LTE G + Sbjct: 7 MSVFAEAAKLGSFVSAAEQLSMSAPAVTRAIATLEAQLNTRLFHRTTRRIRLTEAGIQYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ++ + + P G L + + G+ + + +FL +P++ + Sbjct: 67 NDVQRILADIAQSEAAIAGVQLLPKGTLSVTAPVLFGELYITPIIAQFLRDFPEVNVHGY 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + +D+ D AIR+ KP + S L + + A+P YL N + ++L Sbjct: 127 MYDNIVDLLDTKIDVAIRISKP-KDSGLYATTVGYVRKVTVASPDYLANAPNLKTPEDLK 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 H L+ D + +F +PR C Q S +S + G GI L Y Sbjct: 186 HHTLLYPSDFKEPPVWNFKRNGKTVAIRLQPRFECNQNRSTISAAKS---GLGITRLMSY 242 Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 V D LV ++++ + E N K+K F ++ Sbjct: 243 QVADAIEKGELVSVLDEFNDEKLPIQVVSLEGRHNLEKVKKFVEYV 288 >gi|254374695|ref|ZP_04990176.1| transcriptional regulator [Francisella novicida GA99-3548] gi|151572414|gb|EDN38068.1| transcriptional regulator [Francisella novicida GA99-3548] Length = 296 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62 ++D + +F + G+FT A+QL++SQS++SR+I LE + KL R++RG + +T + Sbjct: 2 NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ S + + T + +S + G LR+ NL+ L F YP++ Sbjct: 62 GQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ +D+ D D AI +KP ++ I + L+ YA+ Y++ P + Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKSKNKLYASKKYIQEKGVPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221 I+EL+ H+++ F D KC + +D E IS Sbjct: 181 IKELENHSIVGFIDN-DKCQNALVGFSELDNSSLEVNIS 218 >gi|56708345|ref|YP_170241.1| LysR transcriptional regulator family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670816|ref|YP_667373.1| LysR transcriptional regulator family protein [Francisella tularensis subsp. tularensis FSC198] gi|134301616|ref|YP_001121584.1| transcriptional regulator, LysR family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|208779950|ref|ZP_03247294.1| pseudin antimicrobial peptide family protein, putative [Francisella novicida FTG] gi|224457469|ref|ZP_03665942.1| transcriptional regulator, LysR family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370966|ref|ZP_04986970.1| LysR transcriptional regulator family protein [Francisella tularensis subsp. tularensis FSC033] gi|254373238|ref|ZP_04988727.1| LysR transcriptional regulator family protein [Francisella tularensis subsp. novicida GA99-3549] gi|254875167|ref|ZP_05247877.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|56604837|emb|CAG45918.1| LysR transcriptional regulator family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321149|emb|CAL09301.1| LysR transcriptional regulator family protein [Francisella tularensis subsp. tularensis FSC198] gi|134049393|gb|ABO46464.1| transcriptional regulator, LysR family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151569208|gb|EDN34862.1| LysR transcriptional regulator family protein [Francisella tularensis subsp. tularensis FSC033] gi|151570965|gb|EDN36619.1| LysR transcriptional regulator family protein [Francisella novicida GA99-3549] gi|208744405|gb|EDZ90705.1| pseudin antimicrobial peptide family protein, putative [Francisella novicida FTG] gi|254841166|gb|EET19602.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|282159582|gb|ADA78973.1| transcriptional regulator, LysR family protein [Francisella tularensis subsp. tularensis NE061598] Length = 296 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62 ++D + +F + G+FT A+QL++SQS++SR+I LE + KL R++RG + +T + Sbjct: 2 NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ S + + T + +S + G LR+ NL+ L F YP++ Sbjct: 62 GQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ +D+ D D AI +KP ++ I + L+ YA+ Y++ P + Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKSKNKLYASKKYIQEKGVPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221 I+EL+ H+++ F D KC + +D E IS Sbjct: 181 IKELENHSIVGFIDN-DKCQNALVGFSELDNSSLEVNIS 218 >gi|291562442|emb|CBL41258.1| transcriptional regulator, LysR family [butyrate-producing bacterium SS3/4] Length = 298 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 147/298 (49%), Gaps = 32/298 (10%) Query: 9 RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68 ++FY VAR G+ + AA++L++SQ +IS+ IS LE +GIKLF R++RG+ LT +G+ L + Sbjct: 9 KIFYEVARCGNISRAAKELYISQPAISKAISKLEESLGIKLFSRNSRGVQLTREGAILFQ 68 Query: 69 VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL-- 126 + + + + EL+ G L+I + L + +L LK F+ YP + I + Sbjct: 69 HVNTAFDSIGRGERELKRIHDFHIGNLKIGVSNTLCKYVLLPYLKGFIGKYPHVNIAIES 128 Query: 127 --------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 +LD + IDI + + +P L + ++ I P YL+N Sbjct: 129 QSTYQTLDMLDARKIDIGL--------VAEPKSKKGLHFQPVMEISDAFVCTPAYLEN-- 178 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYC 235 L ++E + ++ G+++ + + VD + + +I L+ ++++ Sbjct: 179 --LHLREGNDTDIFKTGNIMLLNRSNMSR-KHVDAYLADNQIEINQILETTDMELLIEFS 235 Query: 236 VLGSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNF 289 +G GI ++ D++ D N L+ I D+ P + F C+P+ + +T L+ F F Sbjct: 236 RIGLGIGCVIKDFVEDDLKNGTLIEIPLDIPIPKRVIGFCCHPQDMPDT--LREFMEF 291 >gi|222106718|ref|YP_002547509.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gi|221737897|gb|ACM38793.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 299 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 22/292 (7%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F AR+GS T AA +L L+QS++SRQI LE ++G++LF+R + + LT G+ Sbjct: 14 LSAFEAAARTGSVTAAARELSLTQSAVSRQIKALEEQLGVELFHRERQTIRLTAGGNIYA 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + + T + L+ + G L +A G L L FL +P I I L+ Sbjct: 74 REIRDALRIISTASLTLKANPF--GGTLNLAILPTFGTRWLAPRLPGFLSRHPGITINLV 131 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCR--EPLS 182 D ++ D AI Q + SL++ + V +P R PL Sbjct: 132 TKLSYFDFRLEPVDAAIHFGLADWQGAEMSLLRSETVI----PACSPELRDTYRFQTPLD 187 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +++ +L T D + WLA+ D + ++ + + + + Q + G G+A Sbjct: 188 LRQAPLLHLTTRPDAWER------WLASND--VQSDQVRGMLFDQFATAAQAAMAGLGVA 239 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 LLP++++++ + LV+ ++ + + Y +P + L+AFR++I Sbjct: 240 LLPEFLIEEEMASGRLVKAIDRPMQSTEAYYLVWPNERGSHPPLQAFRDWIL 291 >gi|163792702|ref|ZP_02186679.1| Transcriptional Regulator, LysR family protein [alpha proteobacterium BAL199] gi|159182407|gb|EDP66916.1| Transcriptional Regulator, LysR family protein [alpha proteobacterium BAL199] Length = 302 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 19/277 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR+F V +G+ T A L +S ++ S+++ LE ++ ++L R R ++ TE G L+ Sbjct: 7 LRLFIRVVDTGNITSAGRSLGMSSTAASKRLQDLEADLRVRLLDRTTRSVSATEAGRHLY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S + L+ + + +P+G LR+ G + L F YPD++I L Sbjct: 67 ERVSVLLDDLDGALRQAGDMQSRPAGVLRVTARRSFGMLHVLPALPSFRETYPDVEIDLT 126 Query: 128 LDNKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + ++I+ D IRL +P++ SL+ +L + A+P Y P+ +L Sbjct: 127 L-TEIVEIAPTRGVDLVIRLGEPVE-KSLVAHRLASAERVMCASPAYFAKFPPPVGPDDL 184 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245 D+H + + + E W+ E ++ L+ NS ++ + G G+ALLP Sbjct: 185 DRHACLGYR----RDFEPSVWVFETASGRKEVTVAGPLRSNSGEALRAALLDGIGLALLP 240 Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKN 279 ++V + LVR + D+ CYPE + Sbjct: 241 RWMVAGDLRAGTLVRCLGDIP--------CYPEGYRE 269 >gi|148549065|ref|YP_001269167.1| LysR family transcriptional regulator [Pseudomonas putida F1] gi|148513123|gb|ABQ79983.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 312 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/306 (25%), Positives = 128/306 (41%), Gaps = 38/306 (12%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + L F A GSF AA +L L+ +++ + ++ LE +G++LF R R LTLTE G Sbjct: 6 FSALECFIRSAEVGSFAEAARRLSLTPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAGQ 65 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + S+ + ++ L + +P+G LR++ G+ + L EFL YP I Sbjct: 66 RFLGEVSDSFRTIQYAVANLASAEGQPAGSLRVSMGTVFGRLYVLPLLGEFLRRYPAITP 125 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 DN+ +D+ D AI + ++ RKL H AAP YL+ Q Sbjct: 126 DWHFDNRQVDLIGQGFDAAIGGGFEL-PPGVVARKLTPAHRVLVAAPAYLQRHAPIEDPQ 184 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT----VDRPI--------GEPRISCLQVNSYLSI- 231 L +H+ I P+ +W T +P+ + +C L I Sbjct: 185 ALQRHDGILVRS--PQTGRVRSWPLTSRWQAQQPLQLRQAMTMSDSDAACAVAEQALGIA 242 Query: 232 -------MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284 + Y + G + +LPD+ V D ++YF + L GK + Sbjct: 243 LVSLPFAVPYLLAGRLLRVLPDWYVDDG-------------HISLYFAEHKLLP--GKTR 287 Query: 285 AFRNFI 290 AF +F+ Sbjct: 288 AFIDFV 293 >gi|324005614|gb|EGB74833.1| LysR substrate binding domain protein [Escherichia coli MS 57-2] Length = 305 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SFT AAE+L ++Q+++S QI LE +G+KLF R R L LTE+G Sbjct: 9 NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E++ +L +LQ S K G L ++ + L L F YP I ++ Sbjct: 69 YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126 Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + ++ D D D AI R P L KL ++ +P L + + Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKTLKT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239 ++L KH L L D+ T R +G I+ Q + ++Q + G Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234 Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G+AL + + + R++ DV+ Y ++ GK+ AFR +I KA Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292 >gi|114799488|ref|YP_758751.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739662|gb|ABI77787.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC 15444] Length = 299 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 27/298 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L VF +VA +F AA++L +++S++S+ I LE +GI L R R ++LTE G Sbjct: 4 DLNALSVFALVAEERNFRAAADRLGVTRSAVSQTIRKLEETLGIALVQRTTRSVSLTEAG 63 Query: 64 SKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPD 121 +L+ + L +EL S S +P G+LR+A + + ++ L G L F +P Sbjct: 64 ERLYVEAAPALGDLRRA-VELTGSLSGRPQGQLRLAVS-SIAEHFLGGALLSTFAKAHPG 121 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSS------SLIQRKLVTIHMHAYAAPHYLK 175 IQ+ +++ +++ DI + D A+RL + I+ S QR+L A AP YL Sbjct: 122 IQMDVLVTDEEFDIVAEGYDAAVRLGEVIEQDMIAVPVSAEQRQL------AVGAPSYLA 175 Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIM 232 P ++L H + + PK + W +R E +S + N ++ Sbjct: 176 EAGAPAHPRDLVHHRCVGWRS-APK-QAPYRW-EFAERDGREFSVSVSPEITTNDMALMI 232 Query: 233 QYCVLGSGIALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG-KLKAF 286 + V G+GI + + LV ++ED P F+ ++ Y + +N KL+A Sbjct: 233 KLAVAGAGITFGMEESFWPAMKRGELVAVLED-FCPHFSGFYLYYPSRRNLAPKLRAL 289 >gi|330950994|gb|EGH51254.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7] Length = 315 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +R F VA++GSFT AA L + +++SR +S LE + +L R R + LTE G + Sbjct: 6 NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ +E + E ++ +P+G+L++ + +GQ+ + + + +PD+ L Sbjct: 66 LLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRSHPDVAFDL 125 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 + ++ D+ + D +I L + S + ++L + A+P Y+K +L Sbjct: 126 TMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242 H + L+ WL D P G+ + S L VNS ++ G GI Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGIG 240 Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297 +LP Y + N LVR++ D + +Y YP R ++ K R W Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287 >gi|163761395|ref|ZP_02168469.1| putative LysR transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162281390|gb|EDQ31687.1| putative LysR transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 302 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/299 (22%), Positives = 135/299 (45%), Gaps = 10/299 (3%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 ++ ++L F V +GSFT AA++L ++++ +S QI+ LE E+ L R+ R ++ TE Sbjct: 4 GYNLNRLAYFAAVVETGSFTRAADRLKVTKAVVSSQITQLEQEIQATLLIRNTRKVSPTE 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G + + + + + EL + + P+G LR+ D G ++ + F YP Sbjct: 64 AGEAFYARCATILAEADEAFEELSQMTAVPAGTLRLTAPNDYGTAIVTPVVAAFRRQYPF 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ L D+ D AIR+ + S+L RK+ + Y+ Sbjct: 124 CKVDFHLGESRSDLMTGELDLAIRVGW-LTDSALQARKIGSFRQVLVGGSDYVSGLPAIA 182 Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +L + ++ + M F T + + L ++S ++++ G+G+ Sbjct: 183 HPDDLRTADFVSNALMTDPDMWRFT--NTKGNEVTVRMENTLSIDSTPALLEAVKAGAGL 240 Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKAR 295 A+LPDY+V+D ++ +I P ++ +Y YP + K+ AF + + L + Sbjct: 241 AVLPDYLVQDQLQTGKL--QIILPGWSLRDGGIYTVYPPSRFRPAKVTAFVSMLMLAEK 297 >gi|156933460|ref|YP_001437376.1| hypothetical protein ESA_01278 [Cronobacter sakazakii ATCC BAA-894] gi|156531714|gb|ABU76540.1| hypothetical protein ESA_01278 [Cronobacter sakazakii ATCC BAA-894] Length = 303 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 138/303 (45%), Gaps = 24/303 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L VF V SF+ AA LHL+ ++S+QI+ LE +G LF R+ R L +T +G Sbjct: 7 DDLAVFVHVVECRSFSAAARALHLAPKTVSKQIARLEQALGATLFERNTRNLRITHEGRA 66 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + LE Q +S G +R+ + G+ + +++F L+P + Sbjct: 67 IAERAKVALGVLEEMQEVATGASRDLRGIIRLTAPMPFGRKYVAPAIQDFCRLHPGVTFD 126 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L ++ D+ D D AIR+ + + S L+ ++ A+P YLK +P Q+ Sbjct: 127 LRLSDQMQDLYSDDLDLAIRMGE-LADSRLVALRVADNRRILAASPDYLKAHGQPAHPQD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-------SCLQVNSYLSIMQYCVLG 238 L +HN + F P + W P+ + R+ L +S + +C+ G Sbjct: 186 LAQHNCLVFA--YPGLQQSI-W------PLRKGRMEKAVAVGGTLCSDSGDVLHAWCLAG 236 Query: 239 SGIALLPDYIVKD---NPNLVRIM-EDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293 GI+L + + + + L+R++ E TPS ++ E + +L F +F+ + Sbjct: 237 MGISLRETWDIHEELRDGRLIRVLPEWEATPSRISIVRARREPIAR--RLTVFSDFLLER 294 Query: 294 ARD 296 RD Sbjct: 295 WRD 297 >gi|114563680|ref|YP_751193.1| transcriptional regulator, LysR family protein [Shewanella frigidimarina NCIMB 400] gi|114334973|gb|ABI72355.1| transcriptional regulator, LysR family [Shewanella frigidimarina NCIMB 400] Length = 299 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 10/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F + +GS T +A+QL ++ ++S + LE ++ ++LF R R L +T +G + Sbjct: 6 LHLFIRIVETGSITESAKQLSITPPAVSSALRRLEKQLDVQLFIRTTRQLRITPEGEQFL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E L QI + K SG LR++ + DLG+N++ + E +P + I L Sbjct: 66 FHCREALESLAQGQIAAHQIQGKISGNLRLSISSDLGRNIVLPWMMELTKQHPTLSIDLN 125 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D +D D A+R KP + S+++ + T+ A+ YL EPL +EL Sbjct: 126 IGDSLSDFFLDNVDIALRYGKP-EDSTMVSFLIATMDRITCASADYLSKWGEPLHPEELR 184 Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIALLP 245 HN + L K FN W + + ++ +++ I+ ++ + G GIA Sbjct: 185 THNCL----LHKKKGYLFNQWEYSNQSGNHKIKVDSNNISNDTDIVRRWAIFGQGIAYRA 240 Query: 246 DY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + ++ D + LV+I+ D +P ++ P + T + A R + Sbjct: 241 EIDVLADLRSGKLVQILSDYQSPPVELHLICPSRKQVTPAVLALRELL 288 >gi|161520586|ref|YP_001584013.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353226|ref|YP_001948853.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344636|gb|ABX17721.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] gi|189337248|dbj|BAG46317.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 303 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 132/291 (45%), Gaps = 13/291 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+ VA GSFT AAEQL L + ++S + LE + ++L R R + LT +G+ + Sbjct: 7 MRILARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTVEGTTYY 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + L+ + +E+ P G +R+ + + L +F YPD+++ + Sbjct: 67 ERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPDLRVVIS 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + ++ +D+ D DCA+R+ + +SL+ R++ + A+ Y P + EL Sbjct: 127 MTDRFVDLVADGIDCAVRV-GTLSDTSLVARRIGEMAQLNCASRDYAARHGLPRTPDELP 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243 H + G + + +W T D G+ S + VNS + + CV G G+ Sbjct: 186 DH--VAVGYFSSRTGRELDWEYT-DMDTGDVHSVKMRSIVSVNSSQAYLACCVAGLGMIQ 242 Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 P + ++ D LV ++ + P V +P +++ F +++ Sbjct: 243 APRDGLEPLLADG-TLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWL 292 >gi|170736398|ref|YP_001777658.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818586|gb|ACA93168.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 296 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 128/300 (42%), Gaps = 23/300 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F V AR +F AA+++ ++Q ++++Q+ LE +G+KLF R RGL LT G+ Sbjct: 12 NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 H + +L VK L I+TT L L +F +PD ++ Sbjct: 72 YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTEAHPDYDVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSI 183 +I D + D D AIR KP L L + + A +P L P L+ Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVCAVCSPSLLTAPAAPRALAG 187 Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 Q L D H DL P+ +LA + P+ L+ N + V G GI Sbjct: 188 QVLLHDAH------DLWPE------FLAAMPAPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235 Query: 242 ALLPDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298 AL + +V+ + R+ + D P S Y YP ++ + R ++ A D + Sbjct: 236 ALATEPLVERDIAAGRLCKPFDFAFPLSMGFYLVYPAERRDDDAIAVMRAWMIQAASDGR 295 >gi|77459139|ref|YP_348645.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383142|gb|ABA74655.1| LysR family transcription regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 299 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F A SGS + AA L L+ ++ S + LET +GI+LF R R + LTE+G + Sbjct: 7 LEIFVRTADSGSISAAARALELTPAAASIALKRLETRLGIRLFARSTRSMRLTEEGRRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L + L++ + SG L++A D G+N+L L +F +P IQ+QL+ Sbjct: 67 ESVRLALATLAEGEQALKQQTEGLSGVLQLAAPSDFGRNVLLPWLDDFKREHPHIQLQLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186 L+++ D+ + D A+R P S+L+ ++ H A A+P Y++ P + EL Sbjct: 127 LNDRHADLFRETVDVALRFGVP-SDSTLVALPILPEHRRVACASPAYIERHGTPQNPAEL 185 Query: 187 DKHNLITF 194 +H + + Sbjct: 186 SEHGALLY 193 >gi|239820117|ref|YP_002947302.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] gi|239804970|gb|ACS22036.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 295 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 2/187 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L F +GSF+ AA L S S++S+ ++ LE G++LF R R L+LT++G+ + Sbjct: 10 LVAFASAVEAGSFSAAARTLGTSPSAVSKSVARLEQRFGVRLFQRSTRVLSLTQEGAAYY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + L+ ++ + + G LRI DLG+ LL+ + FL +P++++++ Sbjct: 70 ERIAPLLRALDQAGDAMRPAGIA-QGVLRITAPGDLGRILLEPVIGRFLPRHPELKLEMS 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ +D+ + D AIR + + S L R+L + + A+P YL P SI+ L Sbjct: 129 LADRHVDLIREGYDIAIRAGQ-VADSDLTARRLADLPLVLVASPVYLARRGTPDSIEALH 187 Query: 188 KHNLITF 194 H + + Sbjct: 188 SHAHVRY 194 >gi|209519846|ref|ZP_03268630.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gi|209499722|gb|EDZ99793.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 318 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 143/289 (49%), Gaps = 13/289 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L++F +AR GSF A+ ++ LS S +S++I+ LE +G+KLF R R +++T G Sbjct: 18 LQLFCHIARRGSFVAASTEMGLSPSHVSKRIAMLEAGLGVKLFQRTTRRVSVTSDGEAAL 77 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ ++ + + SG LRI+T++ LG+ + L +P+++I L Sbjct: 78 QWAQKILDDVQGMADAFADRRTELSGLLRISTSLRLGRKHVSPILAMLRERHPNLEIWLE 137 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ D+ + D +R+ + +Q LI ++V A+P YL+ P+ + +L Sbjct: 138 LLDRRADVVGENFDIDVRVGE-VQEPHLIAHRMVESARILCASPAYLEQHGAPVELNDLT 196 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLS--IMQYCVLGSGIALL 244 H+ + F + +D + + P GE + V S LS ++Q+ G GI ++ Sbjct: 197 SHDCLLF-----RGRDDRFGVWRLSGPDGEKSVKVTGTVASNLSDIVVQWAKDGYGIVMV 251 Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LVR++ D S V+ E L ++ +++ F+ Sbjct: 252 SIWDVAESLRAGELVRVLPD-YQQSADVWAVTAERLSSSARIQVCIEFL 299 >gi|194365773|ref|YP_002028383.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348577|gb|ACF51700.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 343 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 17/295 (5%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SK 65 F VA GSF AA++L + +S++SR + LE+++G++LF R R TLT +G Sbjct: 29 AFIAVAAEGSFARAADRLGIGRSAVSRSVQKLESQLGVRLFLRTTRSTTLTREGELFLEG 88 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + + LE + +L+E P G LRI+ + G+ ++ L F YP + ++ Sbjct: 89 CNPGVNCILQALEEMR-DLREG--PPRGHLRISASHGFGRRVIAPLLAAFRAEYPQVSVE 145 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L+LD + D++ D D A R ++ S +I ++LV + + A+P Y++ P S+ Sbjct: 146 LLLDEQAPDLAGDRIDVAFR-DGLLEDSQVIAKQLVPMQLVVCASPAYVRAQGLPSSVDA 204 Query: 186 LDKHNLITFGDLIPKC-MEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H I G +P M+ + + + D + P + L N +Q + G GIA Sbjct: 205 LSTHACI--GRRLPGGRMQPWEFRVDGTDVHLQPP--AALVFNDADLALQAVIDGLGIAQ 260 Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 LP Y V++ +V +E Y CY + +++AF +F + R Sbjct: 261 LPSYQVREALWAGRVVTCLERYAPLDRGHYLCYLSRRQLPKRVRAFIDFSTQRVR 315 >gi|118497885|ref|YP_898935.1| LysR family transcriptional regulator [Francisella tularensis subsp. novicida U112] gi|194323859|ref|ZP_03057635.1| pseudin antimicrobial peptide family protein, putative [Francisella tularensis subsp. novicida FTE] gi|118423791|gb|ABK90181.1| transcriptional regulator, LysR family [Francisella novicida U112] gi|194322223|gb|EDX19705.1| pseudin antimicrobial peptide family protein, putative [Francisella tularensis subsp. novicida FTE] Length = 296 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62 ++D + +F + G+FT A+QL++SQS++SR+I LE + KL R++RG + +T + Sbjct: 2 NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTE 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G L+ S + + T + +S + G LR+ NL+ L F YP++ Sbjct: 62 GQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 Q+ +D+ D D AI +KP ++ I + L+ YA+ Y++ P + Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKSKNKLYASKKYIQEKGVPET 180 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221 I+EL+ H+++ F D KC + +D E IS Sbjct: 181 IKELENHSIVGFIDN-DKCQNALVGFSELDNTSLEVNIS 218 >gi|319780290|ref|YP_004139766.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166178|gb|ADV09716.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 301 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 17/290 (5%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF VAR SFT AAE+L ++Q+++S QI LE VG LF R R + LTE G +L Sbjct: 18 IRVFEAVARHLSFTKAAEELAMTQAAVSYQIKVLEERVGAPLFLRRPRQIALTEAGQRLA 77 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 SE + L + + G L + T + N L +L F + +P + ++L Sbjct: 78 PAVSEAFAILGQAYAAARGGA---DGLLCVTTVLTFASNWLAHHLGSFQIAHPSLAVRLE 134 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSIQ 184 ++ D + + D AIR + L KL+ +P + REP + Sbjct: 135 TSSRLTDFAREDVDLAIR-SGGGKWPGLEAYKLLDADFTPMLSPKLAASIGGVREPADLL 193 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L ++ GD+ + F + + S + +Y + + G G+A+L Sbjct: 194 RLP---ILDPGDIW--WTQWFEAAGVHSHDLAKRPGSSMGAQAYEA--NAAIAGHGVAIL 246 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 + K L++ + V + YPEA +N K++AFR+++ Sbjct: 247 TRALFKAELAGGRLIQPFDLVGDDGHAFWLVYPEARRNVPKIRAFRDWLL 296 >gi|163857341|ref|YP_001631639.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163261069|emb|CAP43371.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 309 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 134/309 (43%), Gaps = 33/309 (10%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA++ +F AA L + +S++SRQ++ LE +G++L R R + LTE G Sbjct: 7 MEFFVEVAKTCNFGRAAANLGMPKSTVSRQVAELERSLGLQLLSRTTRKVELTEAGRLYF 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + ELQ+ PSG LR+ D G + L EF YP++ L Sbjct: 67 ERCQRIVADAQIAHEELQKLVEMPSGPLRVNMPADFGTDFLAEAFMEFSQRYPEVTFYLD 126 Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L + + + C I + + S+ I R L + + YA+P YLK P +L Sbjct: 127 LASPE-HAGRVFQRCDISIEIGALPDSTQIARLLGRLSAYLYASPDYLKRHGTPQHPSDL 185 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR-PI--GEPRISC-----LQVNSYLSIMQYCVLG 238 H +C+E A V R P+ G+ RI VNS + LG Sbjct: 186 TSH----------ECLEFRADNARVTRWPLSRGDERIEVTPGNRFSVNSVAMVRSLASLG 235 Query: 239 SGIALL-PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT----GKLKAFRNFI 290 +GIA+L P V+ + L R++ + F VY A+ +T K + F F+ Sbjct: 236 AGIAILAPAQSVRQDVEQRRLQRVLPEWQAGPFPVY-----AVTDTRLLPAKTRIFIEFL 290 Query: 291 FLKARDWKF 299 + RD K Sbjct: 291 MERLRDGKL 299 >gi|116695673|ref|YP_841249.1| LysR family transcriptional regulator [Ralstonia eutropha H16] gi|113530172|emb|CAJ96519.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 322 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 32/296 (10%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F VA+ G F+ AA QL ++ S ++R+I+ LE E+ + L R+ R L LT G Sbjct: 10 FVAVAQRGGFSAAARQLGVTASILTRRIASLEQELRVPLLVRNTRKLALTPAGEAYFVRC 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI--- 127 E+ +E + EL+ + P G+L + + + + + L EF+ YP I +++ Sbjct: 70 REILSSMEEAEQELERACDDPVGRLHVQLPLIVARLHVVPRLSEFVEQYPGINLKITQAD 129 Query: 128 -----LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 L + +DI++ D + S L+ R L A P YL P Sbjct: 130 GLQHDLIGRGLDIAVWGGD--------LPDSRLVARPLTRNLRVTCATPEYLDRYGRPER 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL--------SIMQY 234 I++L HN +T DL +WL P GE R++ ++ N +++ Sbjct: 182 IEDLASHNCLT-ADLF---HGGRSWL--FQTPEGE-RLAPVKGNLAFDNSDNYREAVLAG 234 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 LG G ++L D V+ L +++ + T+Y YP A K+KAF F+ Sbjct: 235 LGLGQGPSILFDVDVRVG-RLEQVLTGYVARGQTLYAVYPPAQGRNAKVKAFVEFL 289 >gi|311104359|ref|YP_003977212.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310759048|gb|ADP14497.1| bacterial regulatory helix-turn-helix protein, LysR family protein 36 [Achromobacter xylosoxidans A8] Length = 321 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 10/247 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 W + V+A +GS+T AA +L +S++S+S++I LE G+ L R R + LTE G Sbjct: 11 WSHIHCLGVLADTGSYTAAARRLQISKASVSQRIVELEQAAGVPLVRRTTRSVGLTEAGQ 70 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L T+ + ++E +++ S P G L + + LG+ ++ + EFL +PD++I Sbjct: 71 SLVDQTAAAFLRIEEGFSAVRDLSEGPRGVLSVTAPVALGRQVIAPLIPEFLKRFPDVRI 130 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ----SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 QL L + ++ + D AIR + +S + + + V + A P YL P Sbjct: 131 QLELSDHLASLATEGFDLAIRHVAGVPDTHVASVICETRSVLV-----ATPEYLARNGTP 185 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 +L HN + + F D+ + P N+ + + G Sbjct: 186 KIPMDLAAHNCLHYLRRSGSATWSFESRDG-DKRVAVPVRGSFTANNSEVLREVAAGSLG 244 Query: 241 IALLPDY 247 IALLPD+ Sbjct: 245 IALLPDF 251 >gi|291615863|ref|YP_003518605.1| PtxR [Pantoea ananatis LMG 20103] gi|291150893|gb|ADD75477.1| PtxR [Pantoea ananatis LMG 20103] Length = 289 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 8/244 (3%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 +F V SFT AA L +S+S ISR+I+GLE +GI+L R R +TLTE G + Sbjct: 3 LFARVVELKSFTEAARVLGVSKSHISREIAGLEQRLGIRLLQRTTRRMTLTELGQAYYPF 62 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + ++ + +Q++ P+G +R+ + G + L FL + I + L L Sbjct: 63 CVRMLDEMHRAEDFVQQAHQNPAGNVRLQAPVTYGCQCIVPLLNRFLRGHLHINVDLSLT 122 Query: 130 NKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + + D D AI +R P Q + R L IH YAAP YL + L Sbjct: 123 DNNDETLGDGVDIAIVIRAHAPRQGNF---RVLSDIHWGLYAAPDYLAQHPAISHPRLLP 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247 +H+L+ F P + R + R S + N+ +++++ + G+GIA LP Y Sbjct: 180 RHDLLMFHG--PAHTAALPFRRDKLRLAVDVR-SRFRANNSMALLKAALAGNGIAYLPSY 236 Query: 248 IVKD 251 +V++ Sbjct: 237 MVQE 240 >gi|206558762|ref|YP_002229522.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198034799|emb|CAR50667.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 318 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 11/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V SF+ AA +L ++ SS++R+I LET++GI+L +R L TE G L+ Sbjct: 21 LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 80 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L Q +L +P G LR+ G+ L L F+ YP +Q+ L+ Sbjct: 81 GRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDLV 140 Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L + +D+ D A+R+ P++ + + L A+ YL EP S Sbjct: 141 LTDSMVDLQGARLGSDVDLAVRI-GPLEDTRFVATVLAPQRRVLCASAAYLARRGEPASP 199 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H+ + + P F V +PR + N ++++ + G G+A Sbjct: 200 DALAGHDCLAWHGAPPPGAWRFGERRHVP---AQPR---FRSNHSEALLEAAIDGLGLAH 253 Query: 244 LPDYIVKD 251 LP ++ D Sbjct: 254 LPTWLAAD 261 >gi|183599131|ref|ZP_02960624.1| hypothetical protein PROSTU_02585 [Providencia stuartii ATCC 25827] gi|188021356|gb|EDU59396.1| hypothetical protein PROSTU_02585 [Providencia stuartii ATCC 25827] Length = 294 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 2/138 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F AR GSF AA++LH++ S+ISRQI LE ++GI+LF R R + LT G KL+ Sbjct: 10 LRFFDAAARHGSFVKAADELHVTHSAISRQIRLLEEQIGIELFERRNRAVFLTLAGKKLY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + TSE++ +L+ T EL SV S + I+ + L L +F +P I + LI Sbjct: 70 QTTSEIFAQLDKTLAEL--GSVVDSNVVSISCEPTIAMKWLIPRLTQFYQQFPHITVHLI 127 Query: 128 LDNKDIDISMDYADCAIR 145 ID + D A R Sbjct: 128 AAGGPIDFTKAGVDLAFR 145 >gi|330815659|ref|YP_004359364.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327368052|gb|AEA59408.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 301 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 135/286 (47%), Gaps = 19/286 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +GSF+ AA L L Q ++SR ++ LE + ++L +R R L+LT +G + + Sbjct: 10 FARAVETGSFSAAARDLGLGQPNVSRHVAALEAHLRVRLLHRSTRRLSLTPEGERYYAEV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++ ++ L++ + PSG LR+A L + + FL YP + ++L + + Sbjct: 70 RRILDAVDESESSLRD-ELAPSGSLRVACPTALAHAFVMPQVPAFLERYPGLSLELQIQD 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +++ + A+ AIR+ ++ S+L R++ A+ YL P + L +H+ Sbjct: 129 RYVNLLDEGAELAIRIGH-LEDSALRARRIGRFARVCVASRDYLARHGAPATPAALREHD 187 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249 I + L + F GE +S L+VNS ++ + + G GIA P ++ Sbjct: 188 CIVYTLLASQAAWQFR--------DGEVAVSGRLRVNSPQAVQEAVLAGVGIAHGPRWLF 239 Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292 + + L ++++ P ++ Y +L + R +F+ Sbjct: 240 EAGLADGRLQLLLDEHAAPPVPIHLLY-----AANRLLSRRAIVFM 280 >gi|16326468|gb|AAL17790.1|AF361470_11 putative positive transcriptional regulator [Rhizobium leguminosarum bv. trifolii] Length = 299 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 14/292 (4%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D+ LR F + A +F A +L ++ ++++R I+ LE ++G++LF R R ++LT G Sbjct: 3 DYKLLRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEEDLGVQLFVRTTRQVSLTTDG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 + L+ + +L + G+LRI+ GQ +L L F YP I Sbjct: 63 AIFAAQIQPAVQALDNARKDLMNTHKADHGRLRISAPTWFGQQVLPPILSAFRERYPKIS 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 ++ L + ++I D D AIR+ I RK+ +H AAP + C Sbjct: 123 FEISLADGLVNIIDDDYDLAIRISAAPSDKFTIWRKISVVHRILVAAPGS-RFC------ 175 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSG 240 ++ N + D + + T+ G IS + NS + G+G Sbjct: 176 -DMKHPNELIPDDCLAYSGDSKRETWTLSDGSGSATISAGRAVSANSGEVLASMAADGAG 234 Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 +A+LP + V ++ L +++D P + YP ++ +F F Sbjct: 235 VAMLPKFHVAEHLRTGRLAHVLQDWSPPDLWLTLYYPPYQALPPRIASFSKF 286 >gi|56696827|ref|YP_167189.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678564|gb|AAV95230.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3] Length = 303 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 29/300 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LR + R GS + AE+L L+QS++SRQ+ LE ++G++L R + L+LT Sbjct: 13 SLRALEALDRLGSASAVAEELALTQSAVSRQLQTLEGQMGVELIRRDRKRLSLTPAAQDY 72 Query: 67 HRVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 E +++ + LQ V P+ G + +A G L L EF L+PDI I Sbjct: 73 VTEIREALNRIAQASLRLQ---VAPAGGTVNLAILPTFGMRWLMPRLPEFSRLHPDITIN 129 Query: 126 LILDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + + + + + D A+ +P + L+ R + + AP L + P S Sbjct: 130 MTTRLRPFNFASEPFDAALHFGEPDWPGTDRLLLRAERVLPV---CAPGLLPHG-APKSP 185 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVL 237 +L + L+ P+ +D W A + ++C + + + +I Q + Sbjct: 186 ADLLRLPLLHI-QTRPRAWQD--WFAQMG-------VTCPETLPGTLYDQFATIGQAALH 235 Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294 G G+ALLP+Y+V+ + LV D + Y +P A N L+AFR+++ +A Sbjct: 236 GLGVALLPNYVVEQDLATGRLVAAYPDAVETLGAYYLVWPRARGNDPSLRAFRHWLAAQA 295 >gi|77456947|ref|YP_346452.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77380950|gb|ABA72463.1| LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 303 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 7/248 (2%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L++F V GS + AAEQ+ + S++SR +S LE ++ L R R + LTE+G Sbjct: 6 DELQIFVCVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLTEEGKY 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + +++ + L PSG+LRI + + + EF LYPDIQ++ Sbjct: 66 FFEQAKLILDQMDQLEERLSSRQQTPSGRLRINAASPFMLHAIVPYIDEFRRLYPDIQLE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L ++ ID+ D AIR+ + S+L R L + A+P YL+ P + + Sbjct: 126 LNSNDLIIDLLEQSTDVAIRI-GTLADSTLHARSLGCSPLLIVASPAYLEKHGAPREVAD 184 Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L +H L+ F E N W P + +S ++ + G GIA L Sbjct: 185 LSEHTLLGFTQ-----NEGLNQWPLRYVHGDRWPITPAISASSGETVRHLALEGQGIACL 239 Query: 245 PDYIVKDN 252 ++ D+ Sbjct: 240 SHFMTIDD 247 >gi|254242265|ref|ZP_04935587.1| hypothetical protein PA2G_03003 [Pseudomonas aeruginosa 2192] gi|126195643|gb|EAZ59706.1| hypothetical protein PA2G_03003 [Pseudomonas aeruginosa 2192] Length = 306 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 2/191 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L+VF + SGS + AA QL +S + S + LE+E+ ++LF R R L LT +G Sbjct: 4 YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 LE + LQ + +G L+++ D G+NLL L EF YP + + Sbjct: 64 AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183 +L+L ++ D+ D AIR P SSL+ L + AAP YL EP Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAPA-DSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182 Query: 184 QELDKHNLITF 194 +L +HN + + Sbjct: 183 DDLREHNCLLY 193 >gi|311103551|ref|YP_003976404.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758240|gb|ADP13689.1| bacterial regulatory helix-turn-helix protein, LysR family protein 9 [Achromobacter xylosoxidans A8] Length = 305 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 115/245 (46%), Gaps = 21/245 (8%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D +R F V R S T AA+ LH++QS++SRQI LE +G+ L R R ++ T +G++ Sbjct: 12 DLVRGFVAVGRRMSITLAAQDLHVTQSAVSRQIRALEAHLGVPLLVRGFRSVSFTSEGAQ 71 Query: 66 LHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 L R+ +L T Q+ E + + TTI + L L +F YP I Sbjct: 72 LFRMADVWLSQLGDLTEQLRAPERRT----PVTVTTTIGVASLWLLPRLGDFQAAYPHID 127 Query: 124 IQLILDNKDIDISMDYADCAIR--LRK--PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 +++ DN+ IDI + D AIR LR P ++ L +V + A P Sbjct: 128 VRVAADNRLIDIDRESVDIAIRYSLRDGVPDSAAWLFGEAVVPV-----AHPSLKARL-- 180 Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLG 238 L +EL +H L+ F D ++ WL R +G P L+ N Y I+ + G Sbjct: 181 -LDAEELQRHVLLEFDDPTRPWLQWSEWLNA--RGLGRAPARGMLRFNQYDQIVHAALAG 237 Query: 239 SGIAL 243 GIAL Sbjct: 238 HGIAL 242 >gi|227820037|ref|YP_002824008.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339036|gb|ACP23255.1| putative transcriptional regulatory protein, LysR family [Sinorhizobium fredii NGR234] Length = 303 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 24/301 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 LR F VA +GSF+ AA L L+Q ++SRQ+S LE + +L +R + LT +G ++ Sbjct: 6 ALRTFLRVAETGSFSAAAVDLDLTQPAVSRQVSALEAHLNTRLLHRTTSAVALTAEGEQV 65 Query: 67 ----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 RV V ETT E +SV SGK+R+ LG + L L +P + Sbjct: 66 IPMALRVVEAVDALGETTCAE--GASV--SGKVRLTLPAPLGL-YVSDRLTGLLANHPGL 120 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++I + D+ + D +RL P+ SSL+ R+L AP YL+ P + Sbjct: 121 SVEMIFREEPSDLVGEGLDLEVRL-GPVADSSLVCRRLGWTTAFLVGAPSYLRERVAPET 179 Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238 +L H I + GD D +V RI+ L N+ +++ + + G Sbjct: 180 PNDLRAHECICYSRAGDARTWSFSDGADEVSV-------RIAPRLIANNAVAVHRATLAG 232 Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295 SG+A+L +V + LV +M D + YP +++ +F+ R Sbjct: 233 SGLAVLSHILVCPDIEAGRLVNVMPDFPPTRLPINVVYPSRRNMPPRVRVALDFLVEAVR 292 Query: 296 D 296 + Sbjct: 293 E 293 >gi|227115332|ref|ZP_03828988.1| LysR family transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 300 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 2/184 (1%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F V +GS AA +S +++S+ +S LET +G++L R R +TLTE G + Sbjct: 10 FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLISRTTRSMTLTENGKRYFEKV 69 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + H +E + S K G L IATT G+ ++ + F +PDI I+LI + Sbjct: 70 RHIPHDIELAS-QAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKESFPDIDIELISTD 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 ++++ ++ D +IR+ + + LI RK+ ++ AA YL P + +EL +H Sbjct: 129 RNVNHRLEGVDVSIRIEAQL-NDQLIARKIASLPFIFCAAQAYLDRAGTPQTPEELSQHA 187 Query: 191 LITF 194 + F Sbjct: 188 CLVF 191 >gi|197104632|ref|YP_002130009.1| transcriptional regulator,LysR family [Phenylobacterium zucineum HLK1] gi|196478052|gb|ACG77580.1| transcriptional regulator,LysR family [Phenylobacterium zucineum HLK1] Length = 308 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 97/187 (51%), Gaps = 2/187 (1%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+L F VA + SFT A +L +S + +S+ ++ LE +G +L R R ++LT+ G Sbjct: 5 DELAAFVAVADARSFTQGARKLGVSSAQVSKLVARLENRLGARLLNRTTRDVSLTDTGQA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 ++ E + +++ S PSG+L+++ + G+N L L +F + + Sbjct: 65 YLERARDLLDGFEALETSVKDQS-GPSGRLKVSAPVSFGRNQLTPALLDFAAGCSAVSLD 123 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 ++ ++ +++ + D A+R+ + SSL+ R+L + + A+P YL P ++ + Sbjct: 124 VVFSDRMVNLVEEGFDVAVRIGH-LSDSSLVARRLAAVRLVTCASPDYLARAGTPTTLAD 182 Query: 186 LDKHNLI 192 L +H + Sbjct: 183 LARHEAV 189 >gi|78063249|ref|YP_373157.1| LysR family transcriptional regulator [Burkholderia sp. 383] gi|77971134|gb|ABB12513.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 372 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 100/201 (49%), Gaps = 1/201 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R+F + SFT AA+ L +S+++ +R + LET +G+ L R R L T +G + Sbjct: 13 MRIFTRIVEMNSFTRAAQALGISRATATRTVQELETALGMPLLVRTTRALRATPEGDAYY 72 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 R + ++ + ++ +++ PSG LR+ + ++ L F +PD+ + L Sbjct: 73 RRCVRITADVDELEASIRGAALHPSGPLRVELPAAVADTIVLPALGAFHARHPDLVLTLG 132 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + + D D DC++RL + + SSL+ R+L + A+P YL P ++ +L Sbjct: 133 VSGRAADRVGDAIDCSVRLGE-LPDSSLVARRLGMLERVTCASPAYLDRHGVPRTLDDLA 191 Query: 188 KHNLITFGDLIPKCMEDFNWL 208 H ++ + + + ++L Sbjct: 192 MHRAVSLSSVPGQRTAELDFL 212 >gi|260777550|ref|ZP_05886444.1| transcriptional regulators LysR family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607216|gb|EEX33490.1| transcriptional regulators LysR family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 299 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 81/308 (26%), Positives = 153/308 (49%), Gaps = 23/308 (7%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M D +++VF + SGS T AA++L +S+S +S + GLE +G+KL R R +LT Sbjct: 1 MKSDLHRMQVFAQIVESGSITKAADKLDVSKSVLSHHLQGLEQHLGVKLLTRTTRRQSLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 E G + ++ E+ + + E+++S+ +G + + + L +L+ ++ EF+ + Sbjct: 61 EAGQRYYQRCLEMKKLMSLAEEEVRDSNTGLAGTVTVTSPHTLMTHLIGPSMCEFVKNHS 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCR 178 I+ +L+ ++ +++ Y D +I + + SSS K+ + ++P YL N Sbjct: 121 GIEPRLLANDMRLNLIDKYIDLSITVGELPDSSSRAT-KIGELEQVLCSSPEYLTKNNIT 179 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRI-----SCLQVNSYLSI 231 P++ EL + D I E N V+R +G+ I S +S +I Sbjct: 180 LPVTSTELIDY------DYIANQWEGIN----VERKFSVGKQSITYRFHSTRLGDSVPTI 229 Query: 232 MQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288 + G GIA LP V+D+ L+RI D ++ +V+ + L+ +++AF + Sbjct: 230 RMMTLSGLGIACLPILAVEDDLKEGRLIRITADGMSLKASVWAVHNYGLQMPARIRAFID 289 Query: 289 FIFLKARD 296 F+ KA+D Sbjct: 290 FVKEKAKD 297 >gi|241764188|ref|ZP_04762222.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gi|241366465|gb|EER60969.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 297 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 85/185 (45%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 F VAR SFT AA QL +SQS++S I LE +G++L R R ++ TE G +L + Sbjct: 11 AFLAVARERSFTRAAAQLGVSQSALSHTIRALEARLGLRLLTRTTRSVSPTEAGERLIQR 70 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + + + + +E KP+G +RI + +L L + YPD++I++ ++ Sbjct: 71 VAPRFEAITDELVAFEELRDKPAGTVRITASDFAANTILWPKLSKLQQKYPDVKIEVAIE 130 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 DI + D +R I R I M AP YL+ P + +L H Sbjct: 131 PGLTDIVAERFDAGVRFGDQISKDMTAVRISPDIRMVIVGAPSYLEGHPAPKTPSDLTDH 190 Query: 190 NLITF 194 I Sbjct: 191 ECINM 195 >gi|238897139|ref|YP_002921885.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238549467|dbj|BAH65818.1| putative LysR-family transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 304 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%) Query: 18 GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77 GS + AA L++ +++SR I LE+ +G++L R R LTLT+ G + ++ Sbjct: 17 GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAARRILEEV 76 Query: 78 ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137 E + + +P G+L I+ G+ + + EF+ YP I+++L+L +++ D+ Sbjct: 77 ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRVRLLLSDRNADLVS 136 Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197 D+ D A+R+ + SS++ +L T+ + A A P L EP ++L +I Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195 Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254 +P F D+ I P + L V + S LG G+A L Y D + Sbjct: 196 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253 Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 L ++E+V V+ Y KL+ F +F Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288 >gi|17545353|ref|NP_518755.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17427645|emb|CAD14164.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 318 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 1/183 (0%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F A +GSF A L +S +++S+ ++GLE + ++L R R L LTE+G+ R Sbjct: 13 FVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQLTEEGAVFLRQA 72 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 L+ + +P+G++RI+T+ GQ L L L YP + + + D+ Sbjct: 73 RLALEALDVAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLARYPGLSVLVDFDD 132 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ D D A+R ++ S+L+ R + ++ A+P YL + P I++L +H Sbjct: 133 RIVDLVRDGYDLALR-GGHMRDSALVSRPVCRLNKILVASPGYLAHHAVPRMIEDLPQHK 191 Query: 191 LIT 193 L+ Sbjct: 192 LVA 194 >gi|121606876|ref|YP_984205.1| LysR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595845|gb|ABM39284.1| transcriptional regulator, LysR family [Polaromonas naphthalenivorans CJ2] Length = 298 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/293 (20%), Positives = 137/293 (46%), Gaps = 13/293 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + +R+F + GSFT AA+ L L +++++ + LE +G +L +R R ++ ++ G Sbjct: 4 FHAMRLFTRIVELGSFTKAADDLQLPRATVTHAVQQLEKRLGTRLLHRTTRQVSASQDGQ 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 + + LE + S+ +P GKLR+ L ++ + + +F YP I++ Sbjct: 64 AYYERCRRLLADLEEAETAFANSAAQPKGKLRVDLQGTLAKHFVLPVIADFFARYPGIEL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++ + ++ +D+ + DC +R + + SS++ R++ + A+ YL P +++ Sbjct: 124 EIGMGDRFVDLVREGVDCVLRAGE-LSDSSMVARRVARLRQVTCASRDYLARHGTPDTVE 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSG 240 L H + F L P+ + ++ + + +++ ++Y++ C G Sbjct: 183 ALRGHQAVNF--LSPQDGRPLPFEFLINGAVRSLQLQGQVAVSDADAYVAC---CAAHLG 237 Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + LP Y V D+ V ++ V YP+ + + +++ F +++ Sbjct: 238 LIQLPRYHVAARLDSGCFVEVLAPWRPAPMPVSVLYPQHRQLSPRVRVFVDWL 290 >gi|227820574|ref|YP_002824545.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339573|gb|ACP23792.1| transcriptional regulator, LysR family [Sinorhizobium fredii NGR234] Length = 311 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 132/289 (45%), Gaps = 10/289 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF R +FT AA +L ++Q+++S I GLE ++G+ LF+R R + LTE G + H Sbjct: 14 LVVFEAAGRHQNFTRAASELGMTQAAVSYAIRGLEDQLGVPLFHRVHRAVELTEAGERFH 73 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 S ++ + E++ + + + +A + + L + P+I +++ Sbjct: 74 ADVSVGLARIRKSAEEIRAKGRETN--VTLAASTAFASMWMLPRLNQLREDLPEIDLRIQ 131 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 +D+D+ + +R P L ++A A P Y++ P S +L Sbjct: 132 TSVRDLDLDEEPIPLGVRGGDPSHWPRYHAALLADEVVNAVATPAYIEAHGLPRSPADLL 191 Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 KHNLI + + + + W A+ + P R L +N Y+ ++Q + G GIAL Sbjct: 192 KHNLIHLEEPVRRACDWAEWFASAGLSSPAQGKR---LAINDYILVIQAVLAGEGIALGW 248 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++++ + LV + V+ Y +P + + + + R+++ Sbjct: 249 EHLIARQVQSGALVPVGGHVLRTGQAFYVVWPRSRELNAQARRIRDWLI 297 >gi|170731818|ref|YP_001763765.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169815060|gb|ACA89643.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 306 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 11/248 (4%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L +F V SF+ AA +L ++ SS++R+I LET++GI+L +R L TE G L+ Sbjct: 9 LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + +L Q +L +P G LR+ G+ L L F+ YP +Q+ L+ Sbjct: 69 GRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDLV 128 Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 L + +D+ D A+R+ P++ + + L A+ YL EP S Sbjct: 129 LTDSMVDLQGARLGSDVDLAVRI-GPLEDTRFVATVLAPQRRVLCASAAYLARRGEPASP 187 Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 L H+ + + P F V +PR + N ++++ + G G+A Sbjct: 188 DALAGHDCLAWHGAPPPGAWRFGERRHVP---AQPRF---RSNHSEALLEAAIDGLGLAH 241 Query: 244 LPDYIVKD 251 LP ++ D Sbjct: 242 LPTWLAAD 249 >gi|86358592|ref|YP_470484.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282694|gb|ABC91757.1| probable transcriptional regulator protein, LysR family [Rhizobium etli CFN 42] Length = 316 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/302 (23%), Positives = 128/302 (42%), Gaps = 14/302 (4%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 WD R F V + GS + AA +L L+Q +I R + LE +G++LF R GL T+ Sbjct: 11 WDFYRSFLTVLQRGSLSAAARELGLTQPTIGRHVDALEQAIGVELFIRSPNGLVPTDAAQ 70 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 L + + +G +R++ + + +L L YP++ I Sbjct: 71 ALKPYAETLAATAAALLRTASGERERVAGTVRLSASEVVAVEVLPRILGPLQEAYPELHI 130 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 +L + D+ AD A+R+ +P Q +LI R + I + +A YL+ P ++ Sbjct: 131 ELSASDAIEDLVNREADIAVRMAEP-QQDALIVRCIGDIPIAFHAHRRYLERHGIPQTMA 189 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 +L H LI F + + P E + +S L+ + G GI L Sbjct: 190 DLVNHRLIGFDR-----QTAYVRMVMKRYPAPEGIKFSYRTDSNLAQLSAIRAGVGIGLC 244 Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK--------LKAFRNFIFLKARD 296 + ++NP+LV ++ D + E+L+ + + +K R+++ AR Sbjct: 245 QIGLARENPDLVHVLPDAFEIPLGTWVVMHESLRTSPRCRVTFDALVKGLRDYVIPPARK 304 Query: 297 WK 298 K Sbjct: 305 RK 306 >gi|83594697|ref|YP_428449.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577611|gb|ABC24162.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC 11170] Length = 307 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 135/299 (45%), Gaps = 19/299 (6%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LR F A+ SFT AAE L ++Q+++S QI GLE +G+ LF R + + +TE G Sbjct: 9 NALRAFTAAAKRLSFTQAAEDLGVTQAAVSHQIRGLEDWLGVALFRRRNKQVVMTEAGQV 68 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ L + + +G L I+T L L F+ PDI+++ Sbjct: 69 YALAIGQALDEIAEATAALVRNDPR-AGMLTISTMPSFAIKWLVQRLGGFINANPDIEVR 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ + + D AIR+ + + L L+ + +P ++ R + Sbjct: 128 LHTTRELVNFATEGIDVAIRMTREV-GDDLHADLLLEEELFPVCSPALMRGIRPLRQPSD 186 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVLGSGIA 242 L +H L+ D+ +W++ +D P G + + YL +Q C+ G+ Sbjct: 187 LSQHLLLQ--DV------GISWVSWLD-PAGALDVRPARGPGYLDSALAIQACIESQGVM 237 Query: 243 LLPDYIVKDNPNLVRIMEDVI--TPSFTVYF--CYPEALKNTGKLKAFRNFIFLKARDW 297 L +V+D+ R++E PS Y+ C P L G ++AFR +I +A W Sbjct: 238 LGRTVMVEDDLKAGRLVEPFTLRVPSPMKYWLVCPPGHLARPG-VRAFREWILAEASKW 295 >gi|309780695|ref|ZP_07675436.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308920377|gb|EFP66033.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 302 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 19/281 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR GSF AA ++++SR++S LE + ++LF R +RGL LT++G L+ T Sbjct: 12 FNLVARHGSFGEAARATGRPKATLSRRVSELEGSLELRLFERGSRGLKLTQEGQALYERT 71 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + ++ T + S +P G+LRI+ + Q + + F L YP++Q+++ ++ Sbjct: 72 GTLLAEIAETAAAIASGSERPRGRLRISAPMLFSQVAMGKLVATFALKYPEVQLEVTTED 131 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D IR+ P SLI R + + A P EL++ + Sbjct: 132 RGVDMIEEGYDLVIRV-NPDPDESLIGRVFLRDRLVVVATP-------------ELERPS 177 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPDY 247 + + + V P G RI+ V +S + + LG G A LP Sbjct: 178 GKAVVPAVLRGAGTGSAAWDVTGPDGTSRIAIRPVAHLSSLIMVRDTVRLGVGAACLPVS 237 Query: 248 IVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286 +V + ++ DV +P ++ YP + ++ AF Sbjct: 238 LVAHDLEAGTLVHWGDVDSPDIALWALYPSRRLLSARVSAF 278 >gi|239831215|ref|ZP_04679544.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823482|gb|EEQ95050.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 344 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 132/300 (44%), Gaps = 28/300 (9%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D LRVF V G+ + A S + S +I LE +G++LF R R LT TE G Sbjct: 45 DNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV 104 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++ + + E + P G +RI + G+ L+ + EF YPDI+++ Sbjct: 105 FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDKYPDIEVR 164 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L + ++DI + D A +L +++S+L R ++ AAP YL+ P S E Sbjct: 165 LRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVICAAPAYLEKHGVPQSPDE 223 Query: 186 L--DKHN--LITFGD--------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233 L DKH+ L+ F P+ + F D G+ + Q Sbjct: 224 LLGDKHDCLLLRFPGSKEYYWSLQTPEGLRKFEVTGPYDSDDGD------------VLTQ 271 Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + + G GI P + VK+ + LV I+E+ + YP K++ +F+ Sbjct: 272 WALGGRGIINKPLFEVKEYIRDGRLVPILENTPPAPIQLAAIYPHKRFQDPKVRLIIDFM 331 >gi|206562544|ref|YP_002233307.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gi|198038584|emb|CAR54543.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 300 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 19/293 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 ++++ + G+FT AA+ L L + ++++ + LE E+G++L R R +++T +G H Sbjct: 7 MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTAEGEAFH 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 ++ ++ + P G+LRI + L + ++ L +F YP I++ L Sbjct: 67 ARCVQLLGSIDDAFASFPKQRAVPKGRLRIDVALALAKTVVIPALPDFQQRYPQIELVLG 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 ++ D+ + DC +R+ ++ SS++ R + + M A+P Y+ P ++ +L Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMVARTVGAVPMATCASPAYIARHGLPRTLDDLR 185 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGI-- 241 H I F + W RP G+ S L ++ +++ + G GI Sbjct: 186 MHRAINF--FTGRNRRVLEW---TFRPHGDTVAVKLASSLLTDNSEALLSCGLAGLGIVH 240 Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 AL P D+ LV ++ V V YP K++AF +++ Sbjct: 241 ALRPALQPSI---DSGQLVELLPGVPAVPKPVSVLYPNRAHLPDKVRAFIDWL 290 >gi|167647992|ref|YP_001685655.1| LysR family transcriptional regulator [Caulobacter sp. K31] gi|167350422|gb|ABZ73157.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 297 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 29/286 (10%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR G AA ++++SR+++ LE +G++LF R R L LT++G LH T Sbjct: 9 FNLVARHGGVGRAARTAGRPKATLSRRVAELEASLGLRLFERGGRALKLTQEGRALHERT 68 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + + +L+ T + P G+LRI+ + Q + EF L +P++++++ ++ Sbjct: 69 AALLTELDETAANIASGGSTPRGRLRISAPLLFSQTAMGRLAAEFALKFPEVRLEVTTED 128 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D IR+ P +L+ R + + A+P + Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDETLVGRAFLRDRLVVVASPDLARP-------------- 173 Query: 191 LITFGDLIPKCMEDFN-----WLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242 T G +P + W TV G I L ++S + + G G Sbjct: 174 --TDGSAVPAVVRGSATGPEVW--TVANATGRSTILVDPVLSLSSMIMVRDAVRAGCGAG 229 Query: 243 LLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286 LP +V + R+ DV P ++ YP + ++ AF Sbjct: 230 RLPVSLVSHDLAAGRLEHWGDVDGPEIALWTLYPSRRLLSARVSAF 275 >gi|50084417|ref|YP_045927.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49530393|emb|CAG68105.1| putative transcriptional regulator (LysR family) [Acinetobacter sp. ADP1] Length = 309 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 127/272 (46%), Gaps = 9/272 (3%) Query: 6 DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+LR VF V SF+ AA L ++ S++S+QI LE E+ + L +R R L+LTE Sbjct: 3 DQLRAMGVFACVVEKSSFSGAARNLGITTSAVSQQIRSLEQEMDVTLLHRSTRKLSLTEA 62 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G E+ E +I + E G LRIATT +LG + L ++ + + Sbjct: 63 GQAFFHSCQEMLAAAERGKIRINELRDDLIGDLRIATTPELGALHVVPALSHWMSAHRGL 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 + D++ ID+ D AIR+ I SL +V + A+P YL N P+S Sbjct: 123 SVHFEADHRYIDLIEGRIDIAIRMSPRIDDQSLNAIPMVRVDQILVASPSYL-NQSAPIS 181 Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 E L H+LI + F L+T + E + + LQ N+ C G G+ Sbjct: 182 RPEDLMNHDLIPVNLMSGYQHLSFQHLSTGESIDIEMK-NRLQTNNVFIAKSLCQHGHGV 240 Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270 A + V+ N +LV ++ + P+FT+Y Sbjct: 241 ARILYLDVQKELINGSLVEVLPEWNLPAFTLY 272 >gi|298294286|ref|YP_003696225.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296930797|gb|ADH91606.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 310 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 4/194 (2%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MS W ++ VF VA GS + AA +L+LSQ S+SR + GLE +G L R R ++LT Sbjct: 1 MSDRWQEMTVFVRVAEGGSLSRAARELNLSQPSVSRIVGGLEARLGTTLLLRTTRSISLT 60 Query: 61 EQGS-KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 E G+ L R + E Q S+ G +R+A + G + L FL + Sbjct: 61 EAGALYLERARYLLAEMEEAEQATRGVDSLH--GVVRLAMPVLYGARAVIPALAPFLSRH 118 Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178 PD+++++I+ + ++ +D D +IRL P+ S+ RKL + AAP YL + Sbjct: 119 PDLRVEIIMTDARQNLVVDGVDVSIRLGVGPLDDSTFGARKLAQVERLVVAAPAYLSSRG 178 Query: 179 EPLSIQELDKHNLI 192 EP + EL H+ I Sbjct: 179 EPATPAELAGHDCI 192 >gi|238562991|ref|ZP_00439552.2| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] gi|238521530|gb|EEP84981.1| transcriptional regulator, LysR family [Burkholderia mallei GB8 horse 4] Length = 293 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 125/281 (44%), Gaps = 13/281 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D+ VF V +GSFT AA L+ +++++S + LE E+G+ L R R + LTE G + Sbjct: 11 DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + V + E + + G LR+ +T++ ++ L EF+ +P ++++ Sbjct: 71 FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 130 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178 L D+ D D AIRL + Q L R + T + A+P H + Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190 Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238 P ++ L + + + D + V RP +P + + + Q G Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 247 Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEA 276 G+ALLP+++V+D+ +++ + F VY YP A Sbjct: 248 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSA 288 >gi|167841448|ref|ZP_02468132.1| transcriptional regulator, LysR family, putative [Burkholderia thailandensis MSMB43] Length = 301 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 9/288 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKL 66 L F AR G+FT AAE+L+++Q ++S+Q+ LE+ +G++LF R A+ L LT G + Sbjct: 12 LVFFDAAARHGNFTRAAEELNVTQGAVSKQVVKLESFLGMQLFVRDAKALHLTRAGQAYA 71 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 R+ + E T ++E S + IA L + +F YP++ I++ Sbjct: 72 DRIHDMLTSCAEATAFVMKEPSPH---SITIACASGTAGMFLTPIIADFSREYPNVAIRI 128 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +++ D + + + + +++ +HAY AP YL R +S QEL Sbjct: 129 LVREGVFNLNTAEFDIGVYYIRDVPPPGMSGVRIIEEEVHAYCAPGYLG--RRRVSPQEL 186 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 L+ + + M +W D I + NSY ++Q + G G+ L + Sbjct: 187 TSATLLVAEEQQRQWMSWRDWFHLCDSEIAYKPSRTITANSYPVLLQLALRGHGVLLGWN 246 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 ++ ++ +LV + + +P+ ++T + FR ++ Sbjct: 247 QMITPLVESSDLVLASDASASFGGAYQLVWPDDRRDTAAVAHFREWLL 294 >gi|186471054|ref|YP_001862372.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197363|gb|ACC75326.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 297 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 13/254 (5%) Query: 26 QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85 QL++ +SR+I+ LE ++G++LF+R R LTLT +G + + E+ Sbjct: 24 QLNVVPMQVSRRIAALEEDLGVRLFHRTTRSLTLTAEGEAFVPYARAMVAAEAGARAEVS 83 Query: 86 ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145 SS SG LR+ GQ+++ L L P++++ L L ++ +DI D AIR Sbjct: 84 PSSGTASGILRLTAPSGFGQSVVLPMLPGLLEANPELRLDLDLSDRQVDIVGQGLDLAIR 143 Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205 + P++ S L+ RK+ A+P YLK P + ELD+H I + Sbjct: 144 I-APLEDSELVARKIAPNPRLICASPEYLKKHGRPSTSAELDQHRCIRLDSV-------G 195 Query: 206 NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV---KDNPNLVRI-ME 260 +W V + RI + S + V G G+A+L + V + +LV++ +E Sbjct: 196 SWPLVVGGKLIRKRIEGYVTTTSVEAARTAAVQGLGLAMLTSWDVFRQLADHSLVQVQLE 255 Query: 261 DVITPSFTVYFCYP 274 D +V+ P Sbjct: 256 DAAMEDLSVWAVIP 269 >gi|15598761|ref|NP_252255.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107103078|ref|ZP_01366996.1| hypothetical protein PaerPA_01004147 [Pseudomonas aeruginosa PACS2] gi|218890208|ref|YP_002439072.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|296387931|ref|ZP_06877406.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313108916|ref|ZP_07794894.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9949718|gb|AAG06953.1|AE004777_6 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218770431|emb|CAW26196.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310881396|gb|EFQ39990.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 306 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 2/191 (1%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 +D L+VF + SGS + AA QL +S + S + LE+E+ ++LF R R L LT +G Sbjct: 4 YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 LE + LQ + +G L+++ D G+NLL L EF YP + + Sbjct: 64 AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183 +L+L ++ D+ D AIR P SSL+ L + AAP YL EP Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAPA-DSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182 Query: 184 QELDKHNLITF 194 +L +HN + + Sbjct: 183 DDLREHNCLLY 193 >gi|119775523|ref|YP_928263.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B] gi|119768023|gb|ABM00594.1| transcriptional regulator, LysR family [Shewanella amazonensis SB2B] Length = 293 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 9/254 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L + V G F+ AAE L + + +SR +S +E ++G+ + R R + LT++G + Sbjct: 6 DDLEILLTVVDCGGFSAAAELLDIQVARVSRAVSKVENQLGVSILNRTTRRIELTDEGRQ 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 +++ + ++ P+G+LR+ + L +K F +YPDI+I+ Sbjct: 66 FVESVRGGLLQIQRAEEDIITRGEVPAGRLRVDAASPFVFHQLVPLIKPFNQMYPDIRIE 125 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D+ D AIR+ P+ S+L R L ++ AAP YL P + Sbjct: 126 LTSNEGFVDLLEKRTDVAIRI-GPMSDSTLHARPLGRSRLYIVAAPEYLAQRGIPRKTAD 184 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L+ H+ I F P+ + ++ V EP L ++ ++ Q + G+GIA L Sbjct: 185 LEHHDTIGFS--APRSLNEWPLKGFVGL---EP---ALTSSNGETVRQLALSGNGIACLS 236 Query: 246 DYIVKDNPNLVRIM 259 ++V + R+M Sbjct: 237 GFMVNKDIEEGRLM 250 >gi|299770824|ref|YP_003732850.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] gi|298700912|gb|ADI91477.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] Length = 303 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 1/193 (0%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 + D++ L+VF V SF A++ L + S++SR IS LE ++ ++L R R + LT+ Sbjct: 4 ALDFNTLKVFIAVVERESFVGASKILEMPTSNVSRCISQLEEKLDLQLIERSTRHMKLTQ 63 Query: 62 QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121 G L+ + LE T+ EL ++ G LRI ++G LL + +F YPD Sbjct: 64 AGQLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIADFACQYPD 123 Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 ++I + + + D D AI + R + +S I R LVTI AAP ++ P Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIITRGQMDNSDYIARHLVTIPCTIVAAPSLIQRYDTP 183 Query: 181 LSIQELDKHNLIT 193 IQ+ ++ IT Sbjct: 184 THIQQFEELPCIT 196 >gi|222110715|ref|YP_002552979.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730159|gb|ACM32979.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 317 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 20/298 (6%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + + F VA G F A L + +S +SR+++ LE +G++L R R L+LTE G Sbjct: 3 DLNDMLYFAEVAERGGFAAAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRTLSLTEVG 62 Query: 64 SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123 R + + Q + + +P G +R+ + L Q ++ + +FL +P ++ Sbjct: 63 EAYLRHCQAMRDSAQAAQDTVDQVQTEPRGTVRVTCPVTLAQTVVAELMPQFLQRHPQVR 122 Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++ + N+ +++ + D A+R+R ++ S S++ ++L + + A+P L+ P S Sbjct: 123 LEMQVTNRVVNVVEEGVDVALRVRPTLEDSGSMVVKRLDEVRLLLVASPEQLRRQGTPTS 182 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235 +++L D + D + P G PR + L++ Sbjct: 183 LRDL------ALLDTLAMSAADGRASLRLIGPEGREETVHFTPRYVA---DDLLTLKFAA 233 Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + G+G+ +PDY+ LV ++ P V+ + + +++F +F+ Sbjct: 234 LAGTGLCWMPDYMCMSELQEGRLVHLLPQWTQPRSVVHAVFASRRGLSPAVRSFLDFL 291 >gi|319796268|ref|YP_004157908.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gi|315598731|gb|ADU39797.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 296 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 124/285 (43%), Gaps = 8/285 (2%) Query: 5 WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64 + ++ F +A GS T AAE L S ++ R ++ LE +G++LF+R R L+LTE+G Sbjct: 4 FKAMQTFVQIADQGSMTRAAESLGTSLPAVVRSLAALEAHLGVRLFHRTTRRLSLTEEGR 63 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 EV + L + +P+G+L I + G + + F+ Y ++ Sbjct: 64 HYLPSAREVLLAADAADRALNAEAREPAGQLTITAPVLFGHMYVAPAITRFMKRYDKVRC 123 Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184 ++L ++ +++ + D IR+ P++ SSL+ + L TI +P YL P + Sbjct: 124 SVLLYDRAVNLLEENIDVGIRI-SPLEDSSLVAQTLGTIRRVVAVSPDYLARHGTPQHPR 182 Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 EL+ + G + F+ + I + L+ N ++ C G G + Sbjct: 183 ELNGAPCVR-GRIDAPPQWQFH---EAGKTISVTPSNRLEFNHLAPAVEACAAGMGFGIF 238 Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286 Y V L ++ED P V YP A + +AF Sbjct: 239 FSYQVLPYVAQGRLAIVLEDFEPPPRPVSVIYPNARLLPARTRAF 283 >gi|298291731|ref|YP_003693670.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gi|296928242|gb|ADH89051.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 297 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 1/187 (0%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D + F VA GS T AA L S SI+R ++ LE VG++L R R LT+ G Sbjct: 5 DDIEAFLAVAEKGSQTAAARHLRRSLQSINRSLAALERSVGVELVRRTTRHSHLTDAGRA 64 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + ++ ++E ++ +PSG LRIA + + + F+ +P ++I+ Sbjct: 65 FYERVKPALAEINDARLEAAKARGEPSGLLRIAAPVFFAPAYVVPAIAAFMERHPGVEIE 124 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + ++ +++ D D A+R+R+ + SSL+ R+L + + A+ +P Y P + Sbjct: 125 LKVSDRMVNLLEDGIDVAVRIRE-MADSSLMTRRLGELRVVAFGSPDYFARHGRPQHPDD 183 Query: 186 LDKHNLI 192 L +H + Sbjct: 184 LVRHECV 190 >gi|294648659|ref|ZP_06726121.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|292825449|gb|EFF84190.1| LysR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 300 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/272 (27%), Positives = 134/272 (49%), Gaps = 13/272 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 M ++L F + +GSF AAE+L + S +SR +S LE+++ + L R R L LT Sbjct: 1 MKSSIEELLAFITIVDTGSFVAAAERLGQTASGLSRSLSRLESKLDVTLLERTTRKLKLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 ++G + ++ + L + L S SG +R+ + + +++ ++ F YP Sbjct: 61 QEGQQFLNHARKILNDLNAAEEALLRSDQDTSGIIRVDSAVPFILHVIAPLMQLFHQRYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 +I+I+L +++ ID+ D A R + + SSL + + ++ A+P YL P Sbjct: 121 NIEIELNSNDQVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCQSRLYLVASPAYLTQRGTP 179 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLG 238 Q+L H++I F + + W VD GE + S ++ +S ++ Q C+ G Sbjct: 180 QHSQQLAMHDVIGF----TRPLYINKWPIKVD---GEYFVAQSSIKASSGETVRQLCLRG 232 Query: 239 SGIALLPDY-IVKD--NPNLVRIMEDVITPSF 267 GIA L ++ I KD LV + ED I S+ Sbjct: 233 LGIARLSEFEIWKDLEEGRLVALFEDQIEHSY 264 >gi|270260953|ref|ZP_06189226.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044437|gb|EFA17528.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 303 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 2/188 (1%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF GSF+ AA L ++ ++ S + LE +G++L R R L LTE+G + Sbjct: 7 LDVFVRTVDGGSFSEAARALDITPAAASIAVKRLEQRLGVRLLVRSTRSLRLTEEGRRYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 L + ++E SG L+I+ D G+NLL G L EF L +P IQ+QL+ Sbjct: 67 DSARLALGALAEGEQAIREKHQGLSGVLQISAPSDFGRNLLLGWLDEFKLQHPHIQLQLL 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186 ++++ D+ + D A+R + + SSL+ ++ H A+P YL+ P + EL Sbjct: 127 INDRQADLFREPVDIALRFGQ-LADSSLVALPILPQHRRLICASPAYLQRYGVPQTPAEL 185 Query: 187 DKHNLITF 194 +H ++ + Sbjct: 186 AQHGILIY 193 >gi|269960021|ref|ZP_06174398.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835320|gb|EEZ89402.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 293 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 21/294 (7%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L + V G F+ AAE L + + +SR +S LE ++G+ L R R + LT++G + Sbjct: 6 DDLEILLTVVDCGGFSAAAEALDVQVARVSRSVSRLEQQLGVSLLNRTTRRVELTDEGRR 65 Query: 66 L--HRVTSEVY-HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 H T+ Y + E + L E+ P G LR+ + L +K F YP I Sbjct: 66 FVEHVRTAMQYIQQAEECILSLGET---PQGTLRVDAASPFVFHQLVDLIKPFREAYPQI 122 Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 +++L + +D+ D AIR+ K + S+L R L ++ A+P YLK+ P Sbjct: 123 ELELTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARALGKSELYLVASPDYLKHRGIPQK 181 Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 +L H++I F + PK + N L P EP + L N +I Q + G+GIA Sbjct: 182 PTDLAHHDIIGFTE--PKIL---NKLPLKGAPEIEP--TLLSSNGE-TIRQLALAGNGIA 233 Query: 243 LLPDYIVK---DNPNLVRIME-DVITPSF--TVYFCYPEALKNTGKLKAFRNFI 290 L ++V+ + LV I+E D IT + + Y ++ + ++ AF +FI Sbjct: 234 CLSGFMVRKDMEEGRLVPILESDKITNTGREQINAVYYKSSSVSLRISAFLDFI 287 >gi|212637277|ref|YP_002313802.1| Substrate-binding transcriptional regulator, LysR family [Shewanella piezotolerans WP3] gi|212558761|gb|ACJ31215.1| Substrate-binding transcriptional regulator, LysR family [Shewanella piezotolerans WP3] Length = 299 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 9/286 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F V+A GSFT AAE+L S+S +S+Q++ LET +G+ L R R LT+QG + Sbjct: 10 VRAFTVIAEQGSFTLAAEKLGCSRSHLSKQLTQLETYLGVTLITRTTRAQRLTDQGEFFY 69 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126 +E + +++ G + I +G+ ++ + +F+ +P+I I L Sbjct: 70 ERCQHALDVMEQAVAKTVDNAQNLQGNININCVGGYIGEEIVTRLVNDFISAHPNISINL 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 ++ +D+ +D+ D R+ + ++ S L+ RKL+ I AAP YL+ P + L Sbjct: 130 DFSSQRVDLVLDHFDLVFRMGE-LEDSGLVARKLMDITNCTLAAPTYLEQKGIPSHPKAL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246 +H+ I G + F A + + + + + G GI LP+ Sbjct: 189 HEHSCI-IGSI---NHWSFQHKADAQQKAEVAITGKFRCKNGRVMKSSALAGHGIVRLPE 244 Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 D LV + + + P+ +Y Y + +L+ F F Sbjct: 245 LYCADELRRGELVHVFDQWLIPATPLYLLYSKDKFQPARLREFIAF 290 >gi|167579536|ref|ZP_02372410.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 304 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 95/196 (48%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +RVF V SF AA QL +S ++++R I LE + ++L R R L+LTE G + Sbjct: 7 MRVFTRVVDLASFNLAARQLGMSAAAVTRSIGMLEAHLNMRLLNRTTRSLSLTEAGREYL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + KL+ + L +++ P G LRIA+++ + L L + +L+P + + Sbjct: 67 DGCRAIIDKLDEIESNLVQATRDPRGTLRIASSMSFAASGLGPLLAAYRILHPRVAFDVT 126 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 + +D+ D + + SS+L+ R L TI A+P YL P + EL Sbjct: 127 TFDTHVDMVEGAYDVCFSDDRHLASSTLVSRALTTIREVTVASPAYLARHGTPHNPAELG 186 Query: 188 KHNLITFGDLIPKCME 203 +H+L+ D + E Sbjct: 187 EHSLLAISDGTARSWE 202 >gi|152972165|ref|YP_001337311.1| putative DNA-binding transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329997570|ref|ZP_08302842.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] gi|150957014|gb|ABR79044.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538989|gb|EGF65039.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3] Length = 303 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 128/301 (42%), Gaps = 37/301 (12%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R L LTE G + Sbjct: 1 MSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +L + P G LRI + + QN+L + L YP + + L+ Sbjct: 61 QGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L ++ M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADLA 179 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP------IGEPRISC-------LQVNSYLSIMQY 234 H WL RP I IS N ++++++ Sbjct: 180 GH----------------AWLEYSVRPDNEFVIIAPEGISTRLTPQGRFVTNDPMTLVRW 223 Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNF 289 G GIA +P + N R +++ PS+ VY Y E K K++ N+ Sbjct: 224 LTAGVGIAYVPLMWAIEEIN--RGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCINY 281 Query: 290 I 290 + Sbjct: 282 L 282 >gi|300693936|ref|YP_003749909.1| transcriptional regulator, lysr family [Ralstonia solanacearum PSI07] gi|299075973|emb|CBJ35285.1| Transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 305 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 8/220 (3%) Query: 27 LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86 L ++ +++S+ ++GLE +G++L R R L+LTE+G+ R L+T + Sbjct: 16 LGVTSAAVSKNVAGLERALGVRLMNRTTRTLSLTEEGAAFLRQARVALEALDTAIDSIAA 75 Query: 87 SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146 PSG++RI+T+ G+ L L L YP + +++ D++ +D+ + D AIR Sbjct: 76 QRAAPSGRVRISTSWAFGREQLMPALPGLLARYPGLSVEVDFDDRIVDLVREGYDLAIR- 134 Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT----FGDLIPKCM 202 I S+L+ R + +++ A+P YL P EL H LIT G L P Sbjct: 135 GGSIPDSALVSRPIFRLNLVVVASPDYLARHGIPRVPAELRLHRLITRRFLGGRLAPWGF 194 Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242 + + T P + L +++ +++Q G G+A Sbjct: 195 REEDGSITTFDPADS---AVLTLSAPEAVVQAACDGVGVA 231 >gi|239503659|ref|ZP_04662969.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|193077051|gb|ABO11810.2| putative transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 301 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 134/261 (51%), Gaps = 14/261 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L +F V GSF+ A +++ S++S+ IS LE +G++L R R LT +G + Sbjct: 11 ELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + L+ + + + + P G++RI T+ + L + F Y +I+++ Sbjct: 71 YEQGIQILNGLDELEQSVTANHI-PKGRIRIHTSFSYWTHFLLPCISLFNQRYQEIELEA 129 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186 L ++ I++ D AIR P++SS+L+ R L + + +P Y++ P EL Sbjct: 130 HLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTYKQYVCSPLYIEKYGCPEHPDEL 188 Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243 +H L+ + ++ WL AT + + ++ L+VN +I+Q + G+GIA Sbjct: 189 HEHQLLD----VSYQRQNKTWLFKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQ 242 Query: 244 LPDYIVKD---NPNLVRIMED 261 L ++ +++ LV+I+ED Sbjct: 243 LNEFQIRNALQQKQLVKILED 263 >gi|167835260|ref|ZP_02462143.1| glycine cleavage system transcriptional activator [Burkholderia thailandensis MSMB43] Length = 320 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 12/289 (4%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 + LRVF AR SF+ AA +L ++ ++S Q+ LE E+G++LF RH + L LTE G + Sbjct: 10 NALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVRLFVRHGKRLALTEAGGR 69 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + L E++ S +L ++T + + F+ +P+I ++ Sbjct: 70 YAQQVRAALTLLADATREIRASDR--DKRLVVSTLSSFAARWITPRIGPFIERHPEIDLE 127 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L + +D + D D AIR + ++ L+ AP L P + + Sbjct: 128 LRASDSLVDFTRDDVDVAIRFGYGVYPGLYVE-PLLDETFFPVCAP-TLNGGVLPETPAD 185 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 L ++ L+ D + + D L T + EP+ L +S +++Q + G GIAL+ Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240 Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291 + RI+ D+ PS + +F P +L T +++AFR ++ Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLL 289 >gi|254250545|ref|ZP_04943864.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] gi|124879679|gb|EAY67035.1| regulatory protein, LysR [Burkholderia cenocepacia PC184] Length = 313 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 129/281 (45%), Gaps = 17/281 (6%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F +VAR GSF AA ++++SR+++ LE + ++LF R +RG+ LT++G L+ T Sbjct: 21 FNLVARHGSFGEAARVADRPKATLSRRVAELENSLSLRLFERGSRGVKLTQEGRALYERT 80 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130 + +L + + S +P G+LRI+ + Q + + F L YPD+++++ ++ Sbjct: 81 GALLAELADSASAIAAGSERPRGRLRISAPMLFSQFAMGRLVATFALQYPDVRLEVTTED 140 Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190 + +D+ + D IR+ P SLI R ++ + A P + + Sbjct: 141 RPVDMIDEGYDLVIRV-NPDPDESLIGRVILRDRLVVVAKPGLARPG-----------GD 188 Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN--SYLSIMQYCV-LGSGIALLPDY 247 T + + D V P G RI V S LS+++ V LG G A LP Sbjct: 189 APTPAPAVVRGANDMRAAWEVMGPDGTARIPVEPVARLSSLSMVRDTVRLGLGAACLPIS 248 Query: 248 IVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286 +V + ++ DV ++ YP + ++ AF Sbjct: 249 LVSRDLAAGTLVSWGDVPASDIALWALYPSRRLLSARVSAF 289 >gi|309779713|ref|ZP_07674471.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gi|308921512|gb|EFP67151.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 306 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 10/274 (3%) Query: 6 DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65 D L +F + GS AA +L ++++R++ LET +G +L R AR L T +G Sbjct: 3 DDLALFVSIVDHGSLQAAARHANLPPATLTRRLQKLETALGCQLLLRSARSLKPTPEGQL 62 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + L T L + + G LR+ ++L + LL F+ +P+I+++ Sbjct: 63 YYEQCRPLLTALAQTTATLDDDLNQVKGTLRVLAPLNLSRGLLAPAYASFMAAWPEIRLE 122 Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185 L L N++ D+ AD AIR+ + L QR+L I M A+P Y+ P E Sbjct: 123 LSLSNRNEDVWRHGADLAIRVGQ-QDDPKLRQRRLGVIGMVLVASPAYVAEHGAPTHPHE 181 Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244 L H L+ L + T++ +P G ++ +++ L+ G G+ Sbjct: 182 LQAHRLLVSSPLSTWRFTSPDGEETIELQPHGRCDLNDIELGVTLAET-----GLGLLYC 236 Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275 P + + LVR++ D TP +Y +P+ Sbjct: 237 PRTLCHQALEAGRLVRLLPDWRTPQRPIYAVWPQ 270 >gi|262042799|ref|ZP_06015952.1| HTH-type transcriptional activator AaeR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039866|gb|EEW40984.1| HTH-type transcriptional activator AaeR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 303 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 1/187 (0%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + VF V GSFT AA QL +S SSIS+ ++ LE E+ +KL R R L LTE G + Sbjct: 1 MSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIYY 60 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + + + + +L + P G LRI + + QN+L + L YP + + L+ Sbjct: 61 QGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNLV 120 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 D+ D D IR+ +Q SSL R+L ++ M AA YL P +L Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADLA 179 Query: 188 KHNLITF 194 H + + Sbjct: 180 GHAWLEY 186 >gi|56461591|ref|YP_156872.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180601|gb|AAV83323.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR] Length = 285 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 132/272 (48%), Gaps = 23/272 (8%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ F S + AA +LH++ S+IS+Q+ LE + GI LF+R+ R L+LTE G + Sbjct: 9 LKAFTRTVELNSMSAAANELHMTVSAISQQLQRLENDNGISLFHRNTRSLSLTEAGQVFY 68 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 + ++ Q + + +P G+++I + G LL LK+ + ++ QL Sbjct: 69 QSCLDMLAIAAKNQERWDQLTNQPQGQIKIIAPVGFGGGLLSEPLKQLQHEFANVSFQLH 128 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSIQEL 186 + ++ ID+ AD AIR+ P+ S+L R L HM AA H Sbjct: 129 MTDEPIDLITAGADLAIRI-GPLADSTLYARHLADWHMVPCIAAEH------------PA 175 Query: 187 DKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245 ++++ +F DL C + L D P +P++ +N+ +++Q + G G ALLP Sbjct: 176 AENSIKSFDDLPEGCFIGHIPSLPNKDFP--KPKV---LLNNMQTVVQLTLDGVGYALLP 230 Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274 +K ++ L+R++ + ++V+ P Sbjct: 231 QPEIKHYIESGRLLRLLPEWEGSPYSVHAVLP 262 >gi|16263531|ref|NP_436324.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021] gi|14524232|gb|AAK65736.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 369 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 17/263 (6%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 + F VA GS T A L + S +SR I+ LE +G +L R R L LT++G Sbjct: 62 VEAFITVAEKGSMTEGAVTLSTTPSVLSRAITRLEARLGAQLMRRTTRRLRLTDEGRAYL 121 Query: 68 RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + +Q + +G +RI+ G L L F ++P++Q++L Sbjct: 122 EQARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHYRLPAMLDRFTQIHPEVQVEL 181 Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN