RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] (299 letters) >gnl|CDD|182990 PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional. Length = 297 Score = 108 bits (271), Expect = 2e-24 Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 33/298 (11%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F AR SFT AAE+L ++Q+++S QI LE +G+KLF R R L LTE+G + Sbjct: 11 LRAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRRNRSLLLTEEGQRYF 70 Query: 68 RVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 E++ +L E T+ +L+ S K + L ++ L L F +PDI ++L Sbjct: 71 LDIREIFDQLAEATR-KLRARSAKGA--LTVSLLPSFAIQWLVPRLSSFNEAHPDIDVRL 127 Query: 127 ILDNKDIDISMDYADCAIRL---RKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182 ++ D D D AIR P ++ L+ L+ + +P L + + Sbjct: 128 KAVDRLEDFLRDDVDVAIRYGRGNWPGLRVEKLLDEYLLPV-----CSPALLNGGKPLKT 182 Query: 183 IQELDKHNLITFGDLIPKCMEDF-NW-----LATVDRPIGEPRISCLQVNSYLSIMQYCV 236 ++L +H L+ ED+ W L ++ G P S +S +++ Q + Sbjct: 183 PEDLARHTLLHDDS-----REDWRAWFRAAGLDDLNVQQG-PIFS----HSSMAL-QAAI 231 Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291 G G+AL + + LV + V+ Y P++ K+ AFR ++ Sbjct: 232 HGQGVALGNRVLAQPEIEAGRLVCPFDTVLPSPNAFYLVCPDSQAELPKVAAFRQWLL 289 >gnl|CDD|132382 TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). Length = 279 Score = 99.4 bits (248), Expect = 9e-22 Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 15/254 (5%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+ F+ VAR GSFT AAE+L LSQ +++ Q+ LE G++LF+R+ R L LT+ G +L Sbjct: 1 QLKAFHAVARCGSFTRAAERLGLSQPTVTDQVRKLEERYGVELFHRNGRRLELTDAGHRL 60 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + ++ + + L+ES G LRIA T + + F YP I++ + Sbjct: 61 LPIVERLFQQEAEAEFLLRESGALREGSLRIAAT---APYYVLDLVARFRQRYPGIEVSV 117 Query: 127 ILDNKDIDIS--MDY-ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183 + N + Y D A+ L + L + A + RE +++ Sbjct: 118 RIGNSQEVLQALQSYRVDVAVSSEVV-DDPRLDRVVLGNDPLVAVVHRQHPLAERESVTL 176 Query: 184 QELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241 +EL L+ G + + E+ A V PR L++ S +I + + G G+ Sbjct: 177 EELAGQPLLMREPGSVTRQTTEEALAAAGV-----APR-PALEIGSREAIREAVLAGLGV 230 Query: 242 ALLPDYIVKDNPNL 255 +++ V +P L Sbjct: 231 SVVSAAEVGRDPRL 244 >gnl|CDD|132459 TIGR03418, chol_sulf_TF, putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate. Length = 291 Score = 94.8 bits (236), Expect = 2e-20 Identities = 81/301 (26%), Positives = 129/301 (42%), Gaps = 28/301 (9%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 LRVF AR SFT AA +L +Q ++S+Q+ LE E+G LF R RG+ LTE G Sbjct: 2 SLQALRVFESAARLASFTAAARELGSTQPAVSQQVKRLEEELGTPLFERGHRGIELTEDG 61 Query: 64 SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 +L V L+T + + + + L +AT L L F PD+ Sbjct: 62 QRLFEA---VRAGLDTIDLATAQLRARREHETLTLATDFAFATYWLMPRLHRFKRAMPDV 118 Query: 123 QIQLILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179 + L+ +D D D AI R P + + + VT +P L Sbjct: 119 DVSLVTSQDSLDPQRDDIDVAILFGDGRWPGGEAHRLFSEEVT----PVCSPALLAARAT 174 Query: 180 PLSIQELDKHNLITFGDLIPKCMED-FNWLA-----TVDRPIGEPRISCLQVNSYLSIMQ 233 PLS +L + L+ L P F+W ++RP P L N+Y ++Q Sbjct: 175 PLSAADLLRLPLL---HLEPTQPARWFDWAGWFDAHGLERP---PAPGGLTFNNYTLVIQ 228 Query: 234 YCVLGSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289 + G G+AL L D +++ LVR++++ + Y P + ++ FR++ Sbjct: 229 AAIGGQGVALGWAPLVDELLEAG-QLVRLIDEPVVTERGYYLVRPPRKRRGPAVRRFRDW 287 Query: 290 I 290 + Sbjct: 288 L 288 >gnl|CDD|182231 PRK10086, PRK10086, DNA-binding transcriptional regulator DsdC; Provisional. Length = 311 Score = 94.7 bits (236), Expect = 3e-20 Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 8/181 (4%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 KL F V AR SF AA++L L+ S++S +I+ LE E+GIKLF R R + LTE+G Sbjct: 18 KLHTFEVAARHQSFALAADELSLTPSAVSHRINQLEEELGIKLFVRSHRKVELTEEGK-- 75 Query: 67 HRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 RV + L+T E+ + + + SG L + + + Q L L +F YP I + Sbjct: 76 -RVFWALKSSLDTLNQEILDIKNQELSGTLTVYSRPSIAQCWLVPRLADFTRRYPSISLT 134 Query: 126 LILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 ++ N++++ D AI + L+ +++ + YA H L + L Sbjct: 135 ILTGNENVNFQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSPEYAERHALTGNPDNL 194 Query: 182 S 182 Sbjct: 195 R 195 >gnl|CDD|182085 PRK09801, PRK09801, transcriptional activator TtdR; Provisional. Length = 310 Score = 94.3 bits (234), Expect = 3e-20 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+V + SGSF+ AA L + + ++++I LE + L R ARG+ LTE G + + Sbjct: 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127 E+ + + ++ + +P G +RI + G++ + + E + YP++Q+ Sbjct: 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130 Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187 L ++ ID+ D D IR+ I I L AAP YL+ +P S+QEL Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189 Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246 +H+ + + + M W + ++S L NS ++Q+ + G GI L + Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246 Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290 + V ++ LV+++ + S ++ Y E L + KL+ F+ Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292 >gnl|CDD|182601 PRK10632, PRK10632, transcriptional regulator; Provisional. Length = 309 Score = 94.1 bits (234), Expect = 4e-20 Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 30/249 (12%) Query: 10 VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69 VF V GSFT AA QL +S SSIS+ +S LE E+ +KL R R + LTE G ++ Sbjct: 9 VFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYYQG 68 Query: 70 TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129 + H+++ +L + P G LRI + + QN+L G + L YP + + L+ Sbjct: 69 CRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLVTG 128 Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189 D+ D D IR+ +Q SSL R+L + M AA YL P Sbjct: 129 IPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQYGTPEK------- 180 Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQYCV 236 P + +WL RP E P ++ N +++++ Sbjct: 181 ---------PADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVTNDPQTLVRWLT 231 Query: 237 LGSGIALLP 245 G+GIA +P Sbjct: 232 AGAGIAYVP 240 >gnl|CDD|131091 TIGR02036, dsdC, D-serine deaminase transcriptional activator. This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including E. coli, Vibrio cholerae, and Colwellia psychrerythraea. Length = 302 Score = 81.1 bits (200), Expect = 3e-16 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 6/145 (4%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 SF K+ F V AR SF+ AAE+L L+ S+IS +I+ LE E+GI+LF R R + LT Sbjct: 7 SFQLSKMHTFEVAARHQSFSLAAEELSLTPSAISHRINQLEEELGIQLFVRSHRKVELTH 66 Query: 62 QGSKLHRVTSEVYHKL--ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119 +G +++ L E I+ QE SG L + + Q L + +F Y Sbjct: 67 EGKRIYWALKSSLDTLNQEILDIKNQEL----SGTLTLYSRPSFAQCWLVPRIGDFTRRY 122 Query: 120 PDIQIQLILDNKDIDISMDYADCAI 144 P I + ++ N++I+ D AI Sbjct: 123 PSISLTVLTGNENINFQGAGIDVAI 147 >gnl|CDD|184959 PRK14997, PRK14997, LysR family transcriptional regulator; Provisional. Length = 301 Score = 80.8 bits (199), Expect = 4e-16 Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 6/185 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 F W F V G F A L +S +SR+I+ LE +G++L R R +TE Sbjct: 7 FAW-----FVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEV 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 G + + + + Q + V+P G +++ + L + L +F+ YPD+ Sbjct: 62 GQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDV 121 Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181 +QL N+ +D+ + D AIR+R +P + S L+ R L +A+P + P Sbjct: 122 SLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPS 181 Query: 182 SIQEL 186 + EL Sbjct: 182 APAEL 186 >gnl|CDD|183051 PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional. Length = 296 Score = 78.8 bits (195), Expect = 2e-15 Identities = 75/274 (27%), Positives = 114/274 (41%), Gaps = 47/274 (17%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 +R F VA G+FT AAE LH+SQ ++S+QI LE +G++LF R R + LT+ G Sbjct: 6 IRYFLAVAEHGNFTRAAEALHVSQPTLSQQIRQLEESLGVQLFDRSGRTVRLTDAGEVYL 65 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI--- 124 R LE + + + + G LR+A T L+ + F YP I + Sbjct: 66 RYARRALQDLEAGRRAIHDVADLSRGSLRLAMTPTFTAYLIGPLIDAFHARYPGITLTIR 125 Query: 125 ---------QLILDNKDIDISMDYADCAIRLRKP-IQSSSLI--QRKLVTIHMHAYAAPH 172 L D D+ I+ P I++ L LV H AA Sbjct: 126 EMSQERIEALLADDELDVGIAFAPV------HSPEIEAQPLFTETLALVVGRHHPLAA-- 177 Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGE----PRISCLQV 225 R+ L++ EL L+ +F AT +DR PR++ ++ Sbjct: 178 ----RRKALTLDELADEPLVLLSA-------EF---ATREQIDRYFRRHGVTPRVA-IEA 222 Query: 226 NSYLSIMQYCVLGSGIA-LLPDYIVKDNPNLVRI 258 NS +S + V +A LLP I +++ L I Sbjct: 223 NS-ISAVLEIVRRGRLATLLPAAIAREHDGLCAI 255 >gnl|CDD|183679 PRK12682, PRK12682, transcriptional regulator CysB-like protein; Reviewed. Length = 309 Score = 76.2 bits (188), Expect = 1e-14 Identities = 66/265 (24%), Positives = 110/265 (41%), Gaps = 22/265 (8%) Query: 21 THAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQGSKLHRVTSEVYHKLET 79 T AA+ LH SQ +S+ I LE E+GI++F RH + L LTE G + V + ++ Sbjct: 20 TEAAKALHTSQPGVSKAIIELEEELGIEIFIRHGKRLKGLTEPGKAVLDVIERILREVGN 79 Query: 80 TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM-- 137 + + S + SG L IATT + +L + F YP + + L + D M Sbjct: 80 IKRIGDDFSNQDSGTLTIATTHTQARYVLPRVVAAFRKRYPKVNLSLHQGSPDEIARMVI 139 Query: 138 -DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLKNCREPLSIQELDKHNLITF 194 AD I L HA P H L E +++++L ++ LIT+ Sbjct: 140 SGEADIGIATESLADDPDLATLPCYDWQ-HAVIVPPDHPLA-QEERITLEDLAEYPLITY 197 Query: 195 GDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250 F + +DR +P I ++S + I Y LG G+ ++ + + Sbjct: 198 H-------PGFTGRSRIDRAFAAAGLQPDIVLEAIDSDV-IKTYVRLGLGVGIVAEMAYR 249 Query: 251 D--NPNLVRIMEDVITPSFTVYFCY 273 + +LV + + T + Sbjct: 250 PDRDGDLVALPAGHLFGPNTAWVAL 274 >gnl|CDD|185048 PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional. Length = 310 Score = 68.1 bits (167), Expect = 3e-12 Identities = 72/287 (25%), Positives = 119/287 (41%), Gaps = 57/287 (19%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 ++ D D LR F VA +F AA + +QS++S+Q+ LE VG +LF RH R LT Sbjct: 9 INLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLT 68 Query: 61 EQG-------SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLK 113 E G K+ R E L + ++ G L I + D +L L Sbjct: 69 EHGIQLLGYARKILRFNDEACSSLMYSNLQ---------GVLTIGASDDTADTILPFLLN 119 Query: 114 EFLLLYP----DIQIQL------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI 163 +YP D++++ +L+++++D+ A+ +P +L R T Sbjct: 120 RVSSVYPKLALDVRVKRNAFMMEMLESQEVDL-------AVTTHRPSSFPALNLR---TS 169 Query: 164 HMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN--W-LATVDRPIGEPRI 220 Y A Y+ EP+ + LD+ + F D+ + W +A V + R Sbjct: 170 PTLWYCAAEYVLQKGEPIPLVLLDEPS--PFRDMALATLNAAGIPWRIAYVASTLSAVRA 227 Query: 221 SCLQVNSYLSIM---------QYCVLGS--GIALLPD--YIVKDNPN 254 + V + L + VLG G+ LPD Y++ +PN Sbjct: 228 A---VKAGLGVTARPVEMMSPDLRVLGESEGLPPLPDTEYLLCRDPN 271 >gnl|CDD|182137 PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional. Length = 296 Score = 67.5 bits (165), Expect = 4e-12 Identities = 70/293 (23%), Positives = 114/293 (38%), Gaps = 54/293 (18%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 LR F VA +FT AAE+LH +Q S+S+QI LE VG+ L R R + LT G Sbjct: 6 LRYFVAVAEELNFTKAAEKLHTAQPSLSQQIKDLENCVGVPLLVRDKRKVALTAAG---- 61 Query: 68 RVTSEVYHKLETTQIELQESS---------VKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 EV+ L+ + L+++ V+ +L I NLL L F L Sbjct: 62 ----EVF--LQDARAILEQAEKAKLRARKIVQEDRQLTIGFVPSAEVNLLPKVLPMFRLR 115 Query: 119 YPDIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168 +PD I+L+ L ++D+ +R P+ S I + Sbjct: 116 HPDTLIELVSLITTQQEEKLRRGELDVGF--------MRHPVYSDE-IDYLELLDEPLVV 166 Query: 169 AAP--HYLKNCREPLSIQELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISC 222 P H L + + ++ +LD N I+ + + ++ + I Sbjct: 167 VLPVDHPLAHE-KEITAAQLDGVNFISTDPAYSGSLAPIIKAWFAQHNSQPNI------- 218 Query: 223 LQV-NSYLSIMQYCVLGSGIALLPDYIVKDNP-NLVRIMEDVITPSFTVYFCY 273 +QV + L M +G G ++P Y+ N +V PS + + Sbjct: 219 VQVATNILVTMNLVGMGLGCTIIPGYMNNFNTGQVVFRPLAGNVPSIALLMAW 271 >gnl|CDD|182237 PRK10094, PRK10094, DNA-binding transcriptional activator AllS; Provisional. Length = 308 Score = 67.1 bits (164), Expect = 5e-12 Identities = 34/84 (40%), Positives = 48/84 (57%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 FD + LR F VA +GSF+ AAE+L + ++IS +I LE G+ LF+R R +TLT Sbjct: 2 FDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFFRTTRSVTLTAA 61 Query: 63 GSKLHRVTSEVYHKLETTQIELQE 86 G L + LE+ ELQ+ Sbjct: 62 GEHLLSQARDWLSWLESMPSELQQ 85 >gnl|CDD|183681 PRK12684, PRK12684, transcriptional regulator CysB-like protein; Reviewed. Length = 313 Score = 65.0 bits (159), Expect = 2e-11 Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 19/199 (9%) Query: 8 LRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQGSK 65 LR R + T AA+ L+ SQ +S+ I LE E+G+++F RH + L LTE G Sbjct: 6 LRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEDELGVEIFTRHGKRLRGLTEPGRI 65 Query: 66 LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + + ++E + +E + + G L IATT + L +KEF YP +++ Sbjct: 66 ILASVERILQEVENLKRVGKEFAAQDQGNLTIATTHTQARYALPAAIKEFKKRYPKVRLS 125 Query: 126 LILDN-KDID--ISMDYADCAIRLRKPIQSSSLI-------QRKLVTIHMHAYAAPHYLK 175 ++ + I + AD AI L+ +V H Sbjct: 126 ILQGSPTQIAEMVLHGQADLAIATEAIADYKELVSLPCYQWNHCVVVPPDHPLLE----- 180 Query: 176 NCREPLSIQELDKHNLITF 194 R+PL++++L ++ LIT+ Sbjct: 181 --RKPLTLEDLAQYPLITY 197 >gnl|CDD|182077 PRK09791, PRK09791, putative DNA-binding transcriptional regulator; Provisional. Length = 302 Score = 64.8 bits (158), Expect = 2e-11 Identities = 30/121 (24%), Positives = 70/121 (57%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 ++R F VAR GS A+ L++SQ ++++ I LE + +LF+R ++G+TLT+ G Sbjct: 9 QIRAFVEVARQGSIRGASRMLNMSQPALTKSIQELEEGLAAQLFFRRSKGVTLTDAGESF 68 Query: 67 HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 ++ S + +L Q ++++ + +G++ I + ++L+ + F +P +++++ Sbjct: 69 YQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASIARSLMPAVISRFHQQHPQVKVRI 128 Query: 127 I 127 + Sbjct: 129 M 129 >gnl|CDD|183288 PRK11716, PRK11716, DNA-binding transcriptional regulator IlvY; Provisional. Length = 269 Score = 63.3 bits (155), Expect = 8e-11 Identities = 31/99 (31%), Positives = 51/99 (51%) Query: 28 HLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQES 87 H+S S++SRQI LE E+G LF R R +TLTE G +L + + + + L + Sbjct: 2 HVSPSTLSRQIQRLEEELGQPLFVRDNRSVTLTEAGEELRPFAQQTLLQWQQLRHTLDQQ 61 Query: 88 SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 SG+L + ++ + L L F +P ++I+L Sbjct: 62 GPSLSGELSLFCSVTAAYSHLPPILDRFRAEHPLVEIKL 100 >gnl|CDD|182768 PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional. Length = 290 Score = 62.8 bits (153), Expect = 9e-11 Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 13/185 (7%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L VF V +SGS T A+ L LSQS++S ++ LE ++G++LF R + L + E G L Sbjct: 7 QLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGRLL 66 Query: 67 H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125 + R + + +E Q+ ++ +G LRI + +G +L + + YP + ++ Sbjct: 67 YPRALALLEQAVEIEQLFRED-----NGALRIYASSTIGNYILPAMIARYRRDYPQLPLE 121 Query: 126 LILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAP-HYLKNCREPL 181 L + N D+ D + + P S LI + + +AAP L R P+ Sbjct: 122 LSVGNSQ-DVINAVLDFRVDIGLIEGPCHSPELISEPWLEDELVVFAAPDSPL--ARGPV 178 Query: 182 SIQEL 186 ++++L Sbjct: 179 TLEQL 183 >gnl|CDD|183676 PRK12679, cbl, transcriptional regulator Cbl; Reviewed. Length = 316 Score = 62.9 bits (153), Expect = 1e-10 Identities = 85/324 (26%), Positives = 133/324 (41%), Gaps = 62/324 (19%) Query: 1 MSFDWDKLRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLT 58 M+F +L++ AR + T A L SQS +SR I LE E+GI++F R R L Sbjct: 1 MNFQ--QLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFIRRGKRLLG 58 Query: 59 LTEQGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114 +TE G L R+ +E + + ++ SG L IATT + L +K Sbjct: 59 MTEPGKALLVIAERILNEASNVRRLADLFTNDT----SGVLTIATTHTQARYSLPEVIKA 114 Query: 115 FLLLYPDIQIQLILDNKDIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171 F L+P+++++LI ++ AD I + L+ H H+ P Sbjct: 115 FRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWH-HSLLVP 173 Query: 172 --HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCL 223 H L PL+++ + K LIT+ I G RI L Sbjct: 174 HDHPLTQ-ITPLTLESIAKWPLITYRQGI----------------TGRSRIDDAFARKGL 216 Query: 224 QVNSYLS------IMQYCVLGSGIALLPDYIVKDNP--NLVRIMEDVITPSFTVYFCYPE 275 + LS I Y LG GI L+ + + NL+R+ + + TV+ Sbjct: 217 LADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEESNLIRLDTRHLFDANTVWL---- 272 Query: 276 ALKNTGKLKAFRNFIFLKARDWKF 299 LK G+L+ RN++ W+F Sbjct: 273 GLKR-GQLQ--RNYV------WRF 287 >gnl|CDD|182391 PRK10341, PRK10341, DNA-binding transcriptional activator TdcA; Provisional. Length = 312 Score = 63.0 bits (153), Expect = 1e-10 Identities = 31/119 (26%), Positives = 58/119 (48%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L VF V RSGS AA++L L+Q ++S+ I+ +E G++L R G+TLT G L Sbjct: 12 LVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELIVRKNTGVTLTPAGQVLL 71 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126 + + +++ E+ S + + +G + + +F ++P Q+ + Sbjct: 72 SRSESITREMKNMVNEINGMSSEAVVDVSFGFPSLIGFTFMSDMINKFKEVFPKAQVSM 130 >gnl|CDD|183680 PRK12683, PRK12683, transcriptional regulator CysB-like protein; Reviewed. Length = 309 Score = 62.4 bits (152), Expect = 1e-10 Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 29/210 (13%) Query: 1 MSFDWDKLRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT- 58 M+F +LR+ R + T A L+ SQS +S+QI LE E+G+++F R + LT Sbjct: 1 MNFQ--QLRIIREAVRQNFNLTEVANALYTSQSGVSKQIKDLEDELGVEIFIRRGKRLTG 58 Query: 59 LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118 LTE G +L ++ + E + ++ + + SG L +ATT + L +++F + Sbjct: 59 LTEPGKELLQIVERMLLDAENLRRLAEQFADRDSGHLTVATTHTQARYALPKVVRQFKEV 118 Query: 119 YPDIQI-----------QLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH 166 +P + + +++L+ + DI I+ + D + L+ + H H Sbjct: 119 FPKVHLALRQGSPQEIAEMLLNGEADIGIATEALD---------REPDLVSFPYYSWH-H 168 Query: 167 AYAAP--HYLKNCREPLSIQELDKHNLITF 194 P H L RE L+++ + ++ +IT+ Sbjct: 169 VVVVPKGHPLTG-RENLTLEAIAEYPIITY 197 >gnl|CDD|162852 TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. Length = 300 Score = 60.5 bits (147), Expect = 5e-10 Identities = 25/56 (44%), Positives = 34/56 (60%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 L+ F VAR GS AAE LH++Q ++S+ + LE +G LF R RG+ LT G Sbjct: 8 LQCFVEVARQGSVKRAAEALHITQPAVSKTLRELEEILGTPLFERDRRGIRLTRYG 63 >gnl|CDD|182183 PRK09986, PRK09986, DNA-binding transcriptional activator XapR; Provisional. Length = 294 Score = 60.1 bits (146), Expect = 6e-10 Identities = 69/266 (25%), Positives = 106/266 (39%), Gaps = 53/266 (19%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL- 66 LR F VA F AA +L++SQ +S I LE ++G LF RH+R + LT G L Sbjct: 12 LRYFLAVAEELHFGRAAARLNISQPPLSIHIKELEDQLGTPLFIRHSRSVVLTHAGKILM 71 Query: 67 ---HRVTSEVYHKL---------ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114 R+ L E +IE+ G+LR A ++ Sbjct: 72 EESRRLLDNAEQSLARVEQIGRGEAGRIEIGIVGTALWGRLRPA-------------MRH 118 Query: 115 FLLLYPDIQIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH 164 FL P+++ L L+ +++D + R+ + R+L Sbjct: 119 FLKENPNVEWLLRELSPSMQMAALERRELDAGIW------RMADLEPNPGFTSRRL-HES 171 Query: 165 MHAYAAP--HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIG-EPRI 220 A A P H L R + ++ L IT +P D+ +L V + G P+I Sbjct: 172 AFAVAVPEEHPLA-SRSSVPLKALRNEYFIT----LPFVHSDWGKFLQRVCQQAGFSPQI 226 Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPD 246 QVN +++ +G GI LLPD Sbjct: 227 I-RQVNEPQTVLAMVSMGIGITLLPD 251 >gnl|CDD|183678 PRK12681, cysB, transcriptional regulator CysB; Reviewed. Length = 324 Score = 58.0 bits (141), Expect = 3e-09 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%) Query: 21 THAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQGSKLHRVTSEVYHKLET 79 + AE L+ SQ IS+Q+ LE E+GI++F R + LT +T G ++ R+ E+ K+E+ Sbjct: 20 SATAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGEEIIRIAREILSKVES 79 Query: 80 TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122 + E + G L IATT + L +K F+ YP + Sbjct: 80 IKSVAGEHTWPDKGSLYIATTHTQARYALPPVIKGFIERYPRV 122 >gnl|CDD|182948 PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional. Length = 300 Score = 57.3 bits (139), Expect = 4e-09 Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 L V VAR+GSF+ AA++LH S++S + LE + + LF R R + LT G Sbjct: 7 LEVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAG 62 >gnl|CDD|163206 TIGR03298, argP, transcriptional regulator, ArgP family. ArgP used to be known as IciA. ArgP is a positive regulator of argK. It is a negative autoregulator in presence of arginine. It competes with DnaA for oriC iteron (13-mer) binding. It activates dnaA and nrd transcription. It has been demonstrated to be part of the pho regulon (PubMed:10589831). ArgP mutants convey canavanine (an L-arginine structural homolog) sensitivity (PubMed: 15150242). Length = 292 Score = 55.7 bits (135), Expect = 2e-08 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+ +L V GSF AA L ++ S++S++I LE +G L R + TE Sbjct: 1 LDYRQLAALAAVVEEGSFERAAAALSVTPSAVSQRIKALEERLGQPLLVR-TQPCRATEA 59 Query: 63 GSKL 66 G +L Sbjct: 60 GQRL 63 >gnl|CDD|182228 PRK10082, PRK10082, cell density-dependent motility repressor; Provisional. Length = 303 Score = 55.1 bits (132), Expect = 2e-08 Identities = 32/98 (32%), Positives = 50/98 (51%) Query: 11 FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70 F + + +F+ AA ++SQ + SR+I LE +G++LF R L L+EQG H Sbjct: 19 FLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQI 78 Query: 71 SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLL 108 + +LE+ EL+ S K++IA L LL Sbjct: 79 RHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLL 116 >gnl|CDD|182899 PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional. Length = 309 Score = 54.2 bits (131), Expect = 4e-08 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTL 59 + + +F+ V +GS T AA LH SQ ++SR+++ E +G+KLF R RG L Sbjct: 2 AAVSLRHIEIFHAVMTAGSLTEAARLLHTSQPTVSRELARFEKVIGLKLFER-VRGRLHP 60 Query: 60 TEQGSKLHRVTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLL 117 T QG +L Y+ L+ +I S++ G+L IA Q+LL G + FL Sbjct: 61 TVQGLRLFEEVQRSYYGLD--RIVSAAESLREFRQGQLSIACLPVFSQSLLPGLCQPFLA 118 Query: 118 LYPDIQIQLI 127 YPD+ + ++ Sbjct: 119 RYPDVSLNIV 128 >gnl|CDD|183989 PRK13348, PRK13348, chromosome replication initiation inhibitor protein; Provisional. Length = 294 Score = 53.8 bits (130), Expect = 5e-08 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+ +L V +GSF AA +LH++ S++S++I LE +G L R R T Sbjct: 2 LDYKQLEALAAVVETGSFERAARRLHVTPSAVSQRIKALEESLGQPLLVR-GRPCRPTPA 60 Query: 63 GSKLHRVTSEVYHKLETTQIELQES 87 G +L R H Q+ L E+ Sbjct: 61 GQRLLR------H---LRQVALLEA 76 >gnl|CDD|185319 PRK15421, PRK15421, DNA-binding transcriptional regulator MetR; Provisional. Length = 317 Score = 53.9 bits (129), Expect = 6e-08 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67 L+ + GS AA LH +QS++S Q S LE +G +LF R ++ L T QG L Sbjct: 7 LKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTPQGEILL 66 Query: 68 RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ ++V ++ LQ + +LRIA L L+ F +P +++ Sbjct: 67 QLANQVLPQISQA---LQACNEPQQTRLRIAIECHSCIQWLTPALENFHKNWPQVEM 120 >gnl|CDD|179604 PRK03601, PRK03601, transcriptional regulator HdfR; Provisional. Length = 275 Score = 53.9 bits (130), Expect = 6e-08 Identities = 26/63 (41%), Positives = 40/63 (63%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L+ F V+R+ F AAE L+L+QS++S +I LE ++G+ LF RH + LT G Sbjct: 2 DTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTAAG 61 Query: 64 SKL 66 +L Sbjct: 62 ERL 64 >gnl|CDD|183045 PRK11233, PRK11233, nitrogen assimilation transcriptional regulator; Provisional. Length = 305 Score = 52.4 bits (126), Expect = 1e-07 Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 +L+ F + GS T AAE LH++Q ++S+Q++ LE E+ +L R RG+T TE G L Sbjct: 5 RLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTEAGKIL 64 Query: 67 HR 68 + Sbjct: 65 YT 66 >gnl|CDD|179616 PRK03635, PRK03635, chromosome replication initiation inhibitor protein; Validated. Length = 294 Score = 51.7 bits (125), Expect = 2e-07 Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 4/101 (3%) Query: 3 FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62 D+ +L V R GSF AA++LH++QS++S++I LE VG L R + TE Sbjct: 2 LDYKQLEALAAVVREGSFERAAQKLHITQSAVSQRIKALEERVGQVLLVR-TQPCRPTEA 60 Query: 63 GSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTID 102 G +L R +V LE EL P L IA D Sbjct: 61 GQRLLRHARQVRL-LEAELLGELPALDGTPL-TLSIAVNAD 99 >gnl|CDD|182938 PRK11062, nhaR, transcriptional activator NhaR; Provisional. Length = 296 Score = 47.7 bits (114), Expect = 4e-06 Identities = 25/56 (44%), Positives = 32/56 (57%) Query: 8 LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 L F++V + GS AAE L L+ +I+ QI LE + KLF R RGL TE G Sbjct: 9 LYYFWMVCKEGSVVGAAEALFLTPQTITGQIKALEERLQGKLFKRKGRGLEPTELG 64 >gnl|CDD|185155 PRK15243, PRK15243, transcriptional regulator SpvR; Provisional. Length = 297 Score = 45.0 bits (106), Expect = 2e-05 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 7 KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 KL++F + +GSF+ A L+++++ +SR IS LE E+ +LF R L TE Sbjct: 8 KLKIFITLMETGSFSIATSVLYITRTPLSRVISDLERELKQRLFIRKNGTLIPTE----- 62 Query: 67 HRVTSEVYHKLETTQIELQ--ESSVKPSGKLR 96 +Y K+++ I L E + P+GK + Sbjct: 63 --FAQTIYRKVKSHYIFLHALEQEIGPTGKTK 92 >gnl|CDD|182999 PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional. Length = 305 Score = 44.3 bits (105), Expect = 4e-05 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 10/61 (16%) Query: 20 FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-------GLTLTEQGSKLHRVTSE 72 F AA+ H+SQ ++S QI LE E+G+ L R +R GL L +Q V E Sbjct: 18 FRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGLLLVDQAR---TVLRE 74 Query: 73 V 73 V Sbjct: 75 V 75 >gnl|CDD|183677 PRK12680, PRK12680, transcriptional regulator CysB-like protein; Reviewed. Length = 327 Score = 37.3 bits (86), Expect = 0.004 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 12/143 (8%) Query: 7 KLRVFYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL-TLTEQGS 64 +LR +A + + T AA ++H +Q +S+Q+ LE E+G LF R R L ++T G Sbjct: 5 QLRYLVAIADAELNITLAAARVHATQPGLSKQLKQLEDELGFLLFVRKGRSLESVTPAGV 64 Query: 65 KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124 ++ V + + + G+L + TT + +L + + YP + + Sbjct: 65 EVIERARAVLSEANNIRTYAANQRRESQGQLTLTTTHTQARFVLPPAVAQIKQAYPQVSV 124 Query: 125 QL----------ILDNKDIDISM 137 L +L D DI++ Sbjct: 125 HLQQAAESAALDLLGQGDADIAI 147 >gnl|CDD|181918 PRK09508, leuO, leucine transcriptional activator; Reviewed. Length = 314 Score = 32.3 bits (74), Expect = 0.17 Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 2 SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61 D + L VF V + + T AA L +SQ ++S ++ L+ +LF R+ RG+ T Sbjct: 21 MVDLNLLTVFDAVMQEQNITRAAHNLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTA 80 Query: 62 QGSKL 66 + +L Sbjct: 81 RARQL 85 >gnl|CDD|183359 PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional. Length = 319 Score = 31.7 bits (73), Expect = 0.26 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 14/72 (19%) Query: 24 AEQLHLSQSSISRQISGLETEVGIKLF------YRHARGLTL-----TEQGSKLHRVTSE 72 E+L +S+++I + I LE E G+ +F YR A L L RV Sbjct: 25 GEELGISRAAIWKHIQTLE-EWGLDIFSVKGKGYRLAEPLDLLDPERISSQLPPGRV--T 81 Query: 73 VYHKLETTQIEL 84 V +++T L Sbjct: 82 VLPVIDSTNQYL 93 >gnl|CDD|183159 PRK11482, PRK11482, putative DNA-binding transcriptional regulator; Provisional. Length = 317 Score = 30.5 bits (69), Expect = 0.60 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 4 DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63 D + L +F V +AA+ L+L+ S+IS+ I L LF R +G+T T Sbjct: 30 DLNLLTIFEAVYVHKGIVNAAKILNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAYA 89 Query: 64 SKLHRVTSE 72 + LH S+ Sbjct: 90 THLHEYISQ 98 >gnl|CDD|163099 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. Length = 498 Score = 30.0 bits (68), Expect = 0.74 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 25/114 (21%) Query: 34 ISRQISGLETEVG-----IKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE-- 86 I QI E ++ +K F + G L +Q + SE +LE ++EL E Sbjct: 166 IDEQIKTYEKKLEAAENRLKAF-KQENGGILPDQEGDYYSEISEAQEELEAARLELNEAI 224 Query: 87 -------------SSVKPSGKLRIATTIDLGQNLLQGNLKEFLL----LYPDIQ 123 V +G + +D L+ L L +PD+ Sbjct: 225 AQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVI 278 >gnl|CDD|180478 PRK06224, PRK06224, citrate synthase; Provisional. Length = 263 Score = 28.3 bits (64), Expect = 2.6 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 1 MSFDWDKLRVFYVVARS-GSFTHAAEQL 27 + F R +V++R+ G H E+L Sbjct: 209 LGFPPALARGLFVISRAAGLVAHVWEEL 236 >gnl|CDD|162837 TIGR02395, rpoN_sigma, RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations. Length = 429 Score = 28.0 bits (63), Expect = 3.1 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Query: 21 THAAEQLHLSQSSISRQISG--LETEVGI 47 AE+L L +S+ISR I+ L+T G+ Sbjct: 322 REVAEELGLHESTISRAINNKYLQTPRGV 350 >gnl|CDD|152978 pfam12544, LAM_C, Lysine-2,3-aminomutase. This domain family is found in bacteria, archaea and eukaryotes, and is typically between 111 and 127 amino acids in length. The family is found in association with pfam04055. LAM catalyses the interconversion of L-alpha-lysine and L-beta-lysine, which proceeds by migration of the amino group from C2 to C3 concomitant with cross-migration of the 3-pro-R hydrogen of L-alpha-lysine to the 2-pro-R position of L-beta-lysine. Length = 127 Score = 27.7 bits (62), Expect = 3.7 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 9/40 (22%) Query: 238 GSGIALLPDYIVKDNPNLV--RIMEDVITPSFTVYFCYPE 275 G IAL P+Y++ +P+ V R E VIT YPE Sbjct: 24 GGKIALQPNYLISQSPDKVVLRNFEGVIT-------TYPE 56 >gnl|CDD|128802 smart00529, HTH_DTXR, Helix-turn-helix diphteria tox regulatory element. iron dependent repressor. Length = 96 Score = 27.2 bits (61), Expect = 5.6 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Query: 24 AEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66 AE+L++S ++++ + LE + ++ Y RG+TLTE+G +L Sbjct: 6 AERLNVSPPTVTQMLKKLEKDGLVE--YEPYRGITLTEKGRRL 46 >gnl|CDD|162596 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research. Length = 375 Score = 27.0 bits (60), Expect = 5.9 Identities = 5/21 (23%), Positives = 14/21 (66%) Query: 82 IELQESSVKPSGKLRIATTID 102 ++E+ +KP+G + + + +D Sbjct: 118 KAIREAGIKPNGNIILQSVVD 138 >gnl|CDD|115045 pfam06363, Picorna_P3A, Picornaviridae P3A protein. This family consists of the P3A protein of picornaviridae. P3A has been identified as a genome-linked protein (VPg) and is involved in replication. Length = 100 Score = 26.8 bits (59), Expect = 6.4 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 13/60 (21%) Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT-------------GKLKAFRNFI 290 + +Y+ + L+ ME I P +V+ C+ L + GK+K+ NF+ Sbjct: 6 IDEYLNIEMSTLIEQMEAFIEPRPSVFKCFASKLPHKPKTASRKVKAWVKGKMKSMLNFV 65 >gnl|CDD|182720 PRK10775, PRK10775, cell division protein FtsQ; Provisional. Length = 276 Score = 27.0 bits (60), Expect = 6.8 Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 99 TTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134 ++LG+ L F+ LYP +Q Q D K I Sbjct: 207 IRLELGRGDTMKRLARFIELYPVLQQQAQTDGKRIS 242 >gnl|CDD|162841 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. Length = 825 Score = 26.6 bits (59), Expect = 7.9 Identities = 9/19 (47%), Positives = 11/19 (57%) Query: 50 FYRHARGLTLTEQGSKLHR 68 FYR+ R L+L E G R Sbjct: 470 FYRYNRLLSLNEVGGDPGR 488 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.138 0.410 Gapped Lambda K H 0.267 0.0662 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,775,577 Number of extensions: 295028 Number of successful extensions: 548 Number of sequences better than 10.0: 1 Number of HSP's gapped: 531 Number of HSP's successfully gapped: 55 Length of query: 299 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 206 Effective length of database: 3,984,929 Effective search space: 820895374 Effective search space used: 820895374 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (25.9 bits)