RPSBLAST alignment of GI: 254780282 and protein with PDBid: 3hhg

>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B} Length = 306

 Score =  182 bits (462), Expect = 1e-46
 Identities = 74/294 (25%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G L + + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R    +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAG-ELDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKISPHFT--ASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L D++V +      L+ ++ +  +  +      Y        +L+ F +F+
Sbjct: 236 IVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFL 289