BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] (299 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 622 bits (1604), Expect = e-180, Method: Compositional matrix adjust. Identities = 299/299 (100%), Positives = 299/299 (100%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT Sbjct: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 Query: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP Sbjct: 61 EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120 Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP Sbjct: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180 Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG Sbjct: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240 Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF Sbjct: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299 >gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 594 Score = 31.2 bits (69), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 34/109 (31%) Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKP-------------------IQSSSLIQRK 159 YP + + L +D + +D+++ A IR R P I +SS++ +K Sbjct: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340 Query: 160 LVT---------IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199 +++ H+ YA L N +E L +QE N ++ DL+P Sbjct: 341 MISSFHQDNAPKTHLPKYAT--SLTNTQEKLFLQE----NRLSTNDLLP 383 >gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 13/102 (12%) Query: 1 MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60 + D ++RVFY+ S F ++++H + LE +G L Sbjct: 109 LDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNL----------- 157 Query: 61 EQGSKLHRVTSEVYHKLETTQIE--LQESSVKPSGKLRIATT 100 ++H +T +++ + + +I+ L + +V+ R A T Sbjct: 158 SSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANT 199 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.410 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 185,504 Number of Sequences: 1233 Number of extensions: 7475 Number of successful extensions: 19 Number of sequences better than 100.0: 3 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 3 length of query: 299 length of database: 328,796 effective HSP length: 73 effective length of query: 226 effective length of database: 238,787 effective search space: 53965862 effective search space used: 53965862 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 38 (19.2 bits)