BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780282|ref|YP_003064695.1| putative transcription
regulator protein [Candidatus Liberibacter asiaticus str. psy62]
         (299 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 299

 Score =  622 bits (1604), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT
Sbjct: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP
Sbjct: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP
Sbjct: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG
Sbjct: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF
Sbjct: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299


>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 594

 Score = 31.2 bits (69), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 34/109 (31%)

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKP-------------------IQSSSLIQRK 159
           YP + + L +D + +D+++  A   IR R P                   I +SS++ +K
Sbjct: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340

Query: 160 LVT---------IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
           +++          H+  YA    L N +E L +QE    N ++  DL+P
Sbjct: 341 MISSFHQDNAPKTHLPKYAT--SLTNTQEKLFLQE----NRLSTNDLLP 383


>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 492

 Score = 25.0 bits (53), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  D  ++RVFY+   S  F   ++++H +          LE  +G  L           
Sbjct: 109 LDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNL----------- 157

Query: 61  EQGSKLHRVTSEVYHKLETTQIE--LQESSVKPSGKLRIATT 100
               ++H +T +++ + +  +I+  L + +V+     R A T
Sbjct: 158 SSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANT 199


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,504
Number of Sequences: 1233
Number of extensions: 7475
Number of successful extensions: 19
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 299
length of database: 328,796
effective HSP length: 73
effective length of query: 226
effective length of database: 238,787
effective search space: 53965862
effective search space used: 53965862
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 38 (19.2 bits)