HHsearch alignment for GI: 254780283 and conserved domain: COG0493
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].
Probab=100.00 E-value=2.5e-33 Score=213.18 Aligned_cols=292 Identities=24% Similarity=0.230 Sum_probs=196.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 7519999897779999999998699599996788-775687501007877477778978999866432320023222113
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 83 (321)
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y-----GIP~~kl---~k~i~d~~i~~l~~~Gv~~~~~~ 194 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY-----GIPDFKL---PKDILDRRLELLERSGVEFKLNV 194 (457)
T ss_pred CCEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEE-----CCCHHHC---CCHHHHHHHHHHHHCCCEEEECC
T ss_conf 767999888951555889998689879982666777447981-----4844646---42068999999987490999866
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCC-CCEEEEECCCCCCCEEECCC------------CCCCCCCCCCCCCEE
Q ss_conf 32011222222222222222210000147766-42024652774332021012------------111111111221000
Q gi|254780283|r 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGS-EVKWLRLESEKKFQGFGVSA------------CATCDGFFYKNKDVI 150 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~-~~~~~~ipG~~~~~~~~v~~------------~~~~d~~~~~~k~v~ 150 (321)
T Consensus 195 ~vG~~-------it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vv 266 (457)
T COG0493 195 RVGRD-------ITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVV 266 (457)
T ss_pred EECCC-------CCHHHH-HHHHCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf 77996-------789998-6532879993266788768988867777616879999999986035654467777898589
Q ss_pred EEECCCCCCCCEEEEECCC-CCCCCCCCCCC---CC-----CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 0102556543101210133-32223443433---22-----111121122355443322223112114864333444443
Q gi|254780283|r 151 VVGGGNTAAEEALHLAKIA-RRVTIVHRRSS---LR-----SEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSV 221 (321)
Q Consensus 151 ViGgG~~g~e~A~~L~~~~-~~Vtli~r~~~---l~-----~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~ 221 (321)
T Consensus 267 VIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~ 345 (457)
T COG0493 267 VIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRS-AGEEGVERLPFVQPKAFIGNEGGRVTGVKF 345 (457)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH-HHHCCCCCCCCCCCCEEEECCCCEEEECCC
T ss_conf 9899888899988887417539999235566566785444106788776-775477543156763586658980840112
Q ss_pred CC-----------EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HCCCCEECCCCEEEECCCCCCCCCCEEEECCC
Q ss_conf 33-----------14203210000011222211123223565677---42561806997990088855478982897012
Q gi|254780283|r 222 SG-----------VRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287 (321)
Q Consensus 222 ~~-----------v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~---~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv 287 (321)
T Consensus 346 ~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~ 425 (457)
T COG0493 346 GRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDA 425 (457)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEECCEE
T ss_conf 21244666555344577322685587545668866613667543211001235376785510322212468763657544
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688445678999979999999999997
Q gi|254780283|r 288 ADERYRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 288 ~~~~~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
T Consensus 426 ~~g-~~~vv~ai~eGr~aak~i~~~~l 451 (457)
T COG0493 426 VRG-AALVVWAIAEGREAAKAIDKELL 451 (457)
T ss_pred ECC-HHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 236-13414076403299987569988