HHsearch alignment for GI: 254780283 and conserved domain: COG1252

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=98.70  E-value=3.4e-08  Score=66.46  Aligned_cols=95  Identities=27%  Similarity=0.407  Sum_probs=71.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHCC-------------CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             51999989777999999999869-------------95999967887756875010078774777789789998664323
Q gi|254780283|r    6 SKILIIGSGPAGYTAAIYAARAM-------------LKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQA   72 (321)
Q Consensus         6 ~dVvIIG~GpAGl~aA~~l~r~g-------------~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~   72 (321)
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~---IL--------p~~~-----~~l~~~a~~~L  219 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR---IL--------PMFP-----PKLSKYAERAL  219 (405)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH---HC--------CCCC-----HHHHHHHHHHH
T ss_conf             18999898823899999999999987653347865318999825712---13--------5888-----89999999999


Q ss_pred             HHCCCCCCCE-EEEECCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCEEE
Q ss_conf             2002322211-33201122222222222222-221000014776642024
Q gi|254780283|r   73 ENFGTKIIQD-LVVSVDLDRHPFLVETQSGD-LWHADAVVIATGSEVKWL  120 (321)
Q Consensus        73 ~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~-~~~a~~lIiAtG~~~~~~  120 (321)
T Consensus       220 ~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~  265 (405)
T COG1252         220 EKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPL  265 (405)
T ss_pred             HHCCCEEECCCCEEEECCCC----EEECCCCEEEECCEEEECCCCCCCHH
T ss_conf             98797898698148976991----79755883776277998577757866