HHsearch alignment for GI: 254780283 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=98.70 E-value=3.4e-08 Score=66.46 Aligned_cols=95 Identities=27% Similarity=0.407 Sum_probs=71.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC-------------CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 51999989777999999999869-------------95999967887756875010078774777789789998664323
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM-------------LKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQA 72 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g-------------~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~ 72 (321)
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~---IL--------p~~~-----~~l~~~a~~~L 219 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR---IL--------PMFP-----PKLSKYAERAL 219 (405)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH---HC--------CCCC-----HHHHHHHHHHH
T ss_conf 18999898823899999999999987653347865318999825712---13--------5888-----89999999999
Q ss_pred HHCCCCCCCE-EEEECCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCEEE
Q ss_conf 2002322211-33201122222222222222-221000014776642024
Q gi|254780283|r 73 ENFGTKIIQD-LVVSVDLDRHPFLVETQSGD-LWHADAVVIATGSEVKWL 120 (321)
Q Consensus 73 ~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~-~~~a~~lIiAtG~~~~~~ 120 (321)
T Consensus 220 ~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 220 EKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPL 265 (405)
T ss_pred HHCCCEEECCCCEEEECCCC----EEECCCCEEEECCEEEECCCCCCCHH
T ss_conf 98797898698148976991----79755883776277998577757866