HHsearch alignment for GI: 254780283 and conserved domain: COG1635
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism].
Probab=94.14 E-value=0.0092 Score=34.74 Aligned_cols=165 Identities=22% Similarity=0.312 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC---------CCCCC----CCCCCC-----------------
Q ss_conf 221000010255654310121013332223443433221---------11121----122355-----------------
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS---------EKILQ----EKLFLQ----------------- 194 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~---------~~~~~----~~~~~~----------------- 194 (321)
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds 108 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS 108 (262)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCEECCCCEEEECH
T ss_conf 43267998768505789999986796499997301468763344333560444253899999819852445796698327
Q ss_pred -------------CCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEC-CCCC--C---CCCCCCCCCCCCCCCCCCCH-HH
Q ss_conf -------------443322223112114864333444443331420-3210--0---00011222211123223565-67
Q gi|254780283|r 195 -------------SNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLH-NKKE--G---NFFERNVDGIFIAIGYKPNT-KI 254 (321)
Q Consensus 195 -------------~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~-~~~~--g---~~~~i~~D~vi~a~G~~pn~-~~ 254 (321)
T Consensus 109 ~e~~skl~~~a~~aGaki~n~~~veDvi-----~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~ 183 (262)
T COG1635 109 AEFASKLAARALDAGAKIFNGVSVEDVI-----VRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSF 183 (262)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEE-----EECCCCEEEEEEECCHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHH
T ss_conf 9999999999873081024232477899-----81699468999825122205654275112478999678884289999
Q ss_pred HH-CC--CCEE---------CCCCEEEECCCCCCCCCCEEEECCCCC--CC---HHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 74-25--6180---------699799008885547898289701268--84---456789999-799999999999974
Q gi|254780283|r 255 FR-HQ--LKMT---------NTNYIWTMPDSTATSIPGIFAAGDVAD--ER---YRQAITAAA-MGCMAALEVEHYLSI 315 (321)
Q Consensus 255 ~~-~~--~~~~---------~~g~i~~~~~~~~Ts~p~Iya~GDv~~--~~---~~~~~~A~~-~G~~Aa~~i~~yl~~ 315 (321)
T Consensus 184 ~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~e-V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 184 LAKRIPELGIEVPGEKSMWAERGEDLVVENTGE-VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCEEEEHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHHHHHHHC
T ss_conf 998565434556887521366777898844354-058737611456764188656741355664409999999998603