HHsearch alignment for GI: 254780283 and conserved domain: COG3634
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=401.99 Aligned_cols=303 Identities=29% Similarity=0.532 Sum_probs=279.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
T Consensus 209 k~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~a-erfGGQvldT~~IENfIsv~-~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-ERFGGQVLDTMGIENFISVP-ETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHH-HHHCCEECCCCCHHHEECCC-CCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 688349998688631678999986121110015-65188200000333300565-4546689999999876468245533
Q ss_pred -EEEECCCC---CCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf -33201122---22222222222222100001477664202465277433202101211111111122100001025565
Q gi|254780283|r 83 -LVVSVDLD---RHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTA 158 (321)
Q Consensus 83 -~V~~i~~~---~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g 158 (321)
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSG 366 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSG 366 (520)
T ss_pred HHHHCCEECCCCCCCEEEEECCCCEECCCEEEEECCCCHHCCCCCCHHHHHHCCEEECCCCCCCCCCCCEEEEECCCCCH
T ss_conf 43420201578886079995478351131699842764200899856887317826688899865179647998888612
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 43101210133322234434332211112112235544332222311211486433344444333142032100000112
Q gi|254780283|r 159 AEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERN 238 (321)
Q Consensus 159 ~e~A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~ 238 (321)
T Consensus 367 vEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~------kV~Gl~Y~dr~sge~~~l~ 440 (520)
T COG3634 367 VEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGD------KVTGLEYRDRVSGEEHHLE 440 (520)
T ss_pred HHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCC------EECCEEEEECCCCCEEEEE
T ss_conf 8888767755551311210603215789999973279848982231468764775------0113277853678546787
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2221112322356567742561806997990088855478982897012688445678999979999999999997
Q gi|254780283|r 239 VDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 239 ~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
T Consensus 441 LeGvFVqIGL~PNT~WLkg~Vel~~rGEIi-vD~~g~T~vpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyLI 515 (520)
T COG3634 441 LEGVFVQIGLLPNTEWLKGAVELNRRGEII-VDARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLI 515 (520)
T ss_pred EEEEEEEEECCCCHHHHHCHHHCCCCCCEE-EECCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHE
T ss_conf 401589970346816761511117676478-855787678723533753577410489982675133333314320