HHsearch alignment for GI: 254780283 and conserved domain: COG3634

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=100.00  E-value=0  Score=401.99  Aligned_cols=303  Identities=29%  Similarity=0.532  Sum_probs=279.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r    3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD   82 (321)
Q Consensus         3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~   82 (321)
T Consensus       209 k~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~a-erfGGQvldT~~IENfIsv~-~teGpkl~~ale~Hv~~Y~vDimn~  286 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-ERFGGQVLDTMGIENFISVP-ETEGPKLAAALEAHVKQYDVDVMNL  286 (520)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHH-HHHCCEECCCCCHHHEECCC-CCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             688349998688631678999986121110015-65188200000333300565-4546689999999876468245533


Q ss_pred             -EEEECCCC---CCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             -33201122---22222222222222100001477664202465277433202101211111111122100001025565
Q gi|254780283|r   83 -LVVSVDLD---RHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTA  158 (321)
Q Consensus        83 -~V~~i~~~---~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g  158 (321)
T Consensus       287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSG  366 (520)
T COG3634         287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSG  366 (520)
T ss_pred             HHHHCCEECCCCCCCEEEEECCCCEECCCEEEEECCCCHHCCCCCCHHHHHHCCEEECCCCCCCCCCCCEEEEECCCCCH
T ss_conf             43420201578886079995478351131699842764200899856887317826688899865179647998888612


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             43101210133322234434332211112112235544332222311211486433344444333142032100000112
Q gi|254780283|r  159 AEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERN  238 (321)
Q Consensus       159 ~e~A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~  238 (321)
T Consensus       367 vEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~------kV~Gl~Y~dr~sge~~~l~  440 (520)
T COG3634         367 VEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGD------KVTGLEYRDRVSGEEHHLE  440 (520)
T ss_pred             HHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCC------EECCEEEEECCCCCEEEEE
T ss_conf             8888767755551311210603215789999973279848982231468764775------0113277853678546787


Q ss_pred             CCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2221112322356567742561806997990088855478982897012688445678999979999999999997
Q gi|254780283|r  239 VDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLS  314 (321)
Q Consensus       239 ~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~  314 (321)
T Consensus       441 LeGvFVqIGL~PNT~WLkg~Vel~~rGEIi-vD~~g~T~vpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyLI  515 (520)
T COG3634         441 LEGVFVQIGLLPNTEWLKGAVELNRRGEII-VDARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLI  515 (520)
T ss_pred             EEEEEEEEECCCCHHHHHCHHHCCCCCCEE-EECCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHE
T ss_conf             401589970346816761511117676478-855787678723533753577410489982675133333314320