HHsearch alignment for GI: 254780283 and conserved domain: PRK06263
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=99.64 E-value=8.5e-15 Score=104.98 Aligned_cols=113 Identities=27% Similarity=0.396 Sum_probs=69.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCEEEE----------EC------------------------
Q ss_conf 675199998977799999999986995999967887--756875----------01------------------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL--GGQLMI----------TE------------------------ 47 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~--GG~l~~----------~~------------------------ 47 (321)
T Consensus 6 i~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~~~sG~s~~a~gg~~a~~~~~Ds~e~~~~Dt~~~g~~l~d~~lv~ 84 (539)
T PRK06263 6 MITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (539)
T ss_pred EECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9649899995399999999998259-979997789899984788866771508999999999999998526888899999
Q ss_pred -----------CCCCC-----------------CC-------CCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCC
Q ss_conf -----------00787-----------------74-------7777897899986643232002322211-332011222
Q gi|254780283|r 48 -----------SIENY-----------------PG-------FATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDR 91 (321)
Q Consensus 48 -----------~i~n~-----------------~g-------~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~ 91 (321)
T Consensus 85 ~l~~~a~~~v~~L~~~G~~f~~~~~g~~~~~~~gg~s~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Ll~~~ 164 (539)
T PRK06263 85 ILVKEAPKRLKDLEKFGAVFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLLVDE 164 (539)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECC
T ss_conf 99999999999999839985127998673100478544432235776619999999999861697799515999999817
Q ss_pred -CC----CCCCCCCCC--CCCCCEECCCCCCCC
Q ss_conf -22----222222222--221000014776642
Q gi|254780283|r 92 -HP----FLVETQSGD--LWHADAVVIATGSEV 117 (321)
Q Consensus 92 -~~----~~v~~~~g~--~~~a~~lIiAtG~~~ 117 (321)
T Consensus 165 ~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 197 (539)
T PRK06263 165 LGKVFGAVFLDLRNGDIVPIYAKSTILATGGAG 197 (539)
T ss_pred CCEEEEEEEEECCCCEEEEEEECEEEECCCCCC
T ss_conf 996999999977898299996056998989876